Citrus Sinensis ID: 005656

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-----
Protein Sequence
MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEILFKPSESTKEDTESLKVGNKTKPDIPVSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKARKLLEVQSAVWQKIDKMFQSARCVVSFLSNSQL
Secondary Structure (PSIPRED)
ccccEEEEEEccccccEEEEEEccccEEEEEccccEEEccccccccccEEEEEEcccccEEEEEEccccEEEEEcccccccccccEEccccccccEEEEEcccccEEEEEcccccEEEEEcccccccEEEccccccEEcEEEccccccEEEccEEEEEEEEEEEccccEEEEEEccccEEEEEEccccccccEEEcccccccccEEEEEEcccccEEEEEEccccEEEEEccccccccccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEcccEEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEEccccEEEEEcccEEcccccccEEccccccEEEEEccccccccccccccccccccccccccccccccccccccccccEEEEEcccHHHHHHHcccHHHHHHccccccccccccccccccccccccccEEcccccccccccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHcccccccEEEccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEEcccccccEEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEccccccccEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEccccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEccccccEEEEEEcccccEEEEEcccccEEEEEEEEEEEcccccEEEEEEcccccEEEEEEcccccccEEccccccccccEEEcccccEEEEccccccEEEEEEcccccHHHHHHHcHHHHHHccccccccccccccccEcccccccccccccccccccccccccHHHcHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHccccccEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MRGAVTALafssdgqpllasgassgvISIWNLEKRRLQSVIREAHDNAIISLHffanepvlmsasadnSIKMWIfdttdgdprllrfrsghsapplcIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEelklkpviafdcaeirerdwcnvvtCHMDTAQAYVWRLQNfvlgehilrpcpenptavkactisacgnfaVLGTAGGWIERFnlqsgisrgsyldmsersnyahngeVVGVACDSTNTLMIsagyhgdikvwdfkgrdlksrWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFeghtdritdfcfsedgkwllssgmdgslRIWDVILARQIDAIHVDVSItalslspnmdVLATAHVDQNGVYLWVNRcmfsgdsnidsyasgkeivsvkmpsvssvegcqdenssqpdvhrtdrvpkdsfglptfkqqipdlvtlsllpksqwqSLINLDIIKarnkpieppkkpekapfflpsvpslsgeilfkpsestkedteslkvgnktkpdipvSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIidhddhqeldkrpeyLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKARKLLEVQSAVWQKIDKMFQSARCVVSFLSNSQL
Flexible Loop (DISEMBL)
MRGAVTALafssdgqpllASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIqdqqsrelsqrhvakrarklkmkeeelklkpviafdcaeirERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKfeghtdritdfcFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEgcqdenssqpdvhrtdrvPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEILFKpsestkedteslkvgnktkpdiPVSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKARKLLEVQSAVWQKIDKMFQSARCVVSFLSNSQL
Low Complexity Region (SEG)
MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARklkmkeeelklkPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNkpieppkkpekAPFFLPSVPSLSGEILFKPSESTKEDTESLKVGNKTKPDIPVSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKARKLLEVQSAVWQKIDKMFQSARCVVSFLSNSQL
Disordered region (IsUnstruct)
**********************SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ*************************LKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYA****************************************GLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKA**********************************************************IQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKARKLLEVQSAVWQKIDKMFQSARCVVSFL*****
Disordered Region (DISOPRED)
MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPK********KQQIPDLVTLSLLPKSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSL*********************************FIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHD*HQ*LDKRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKARKLLEVQS**WQKIDKMFQSARCVVSFLSNSQL
Disordered Region (DISEMBL)
MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSV**********************RTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEILFKPS***********VGNKTKPDIPVSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKARKLLEVQSAVWQKIDKMFQSARCVVSFLSNSQL
Disordered Region (DISPRO)
*RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEILFK**********SLKVGNK**PDIPVSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKARKLLEVQSAVWQKIDKMFQSARCVVSFLSNSQL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEILFKPSESTKEDTESLKVGNKTKPDIPVSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKARKLLEVQSAVWQKIDKMFQSARCVVSFLSNSQL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	685	2.2.26 [Sep-21-2011]
O14053	902	Uncharacterized WD repeat	yes	no	0.916	0.696	0.362	1e-120
Q8NI36	951	WD repeat-containing prot	yes	no	0.953	0.686	0.335	1e-104
Q06078	939	U3 small nucleolar RNA-as	yes	no	0.905	0.660	0.318	8e-89
Q8YV57	1683	Uncharacterized WD repeat	yes	no	0.556	0.226	0.245	1e-18
Q8YTC2	1258	Uncharacterized WD repeat	no	no	0.522	0.284	0.230	5e-15
Q7ZUV2	694	Katanin p80 WD40 repeat-c	no	no	0.224	0.221	0.267	2e-11
F6ZT52	470	POC1 centriolar protein h	no	no	0.426	0.621	0.210	3e-11
Q9USN3	777	Probable U3 small nucleol	no	no	0.217	0.191	0.296	3e-11
Q8BHD1	476	POC1 centriolar protein h	no	no	0.446	0.642	0.220	7e-11
Q5ZME8	513	WD40 repeat-containing pr	no	no	0.232	0.309	0.251	8e-11

>sp|O14053|YC47_SCHPO Uncharacterized WD repeat-containing protein C1672.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1672.07 PE=4 SV=1

 Score =  432 bits (1110), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 244/673 (36%), Positives = 370/673 (54%), Gaps = 45/673 (6%)

Query: 3   GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLM 62
           G V + +F +DG P+LAS    G +S W+L KRR+Q+V   AH  ++  + F   +P+L+
Sbjct: 246 GQVLSCSFRTDGTPILASSNPIGDLSFWDLSKRRIQNVTYNAHFGSLPKIQFLNGQPILV 305

Query: 63  SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHIL-SAGQDRAFRLFSV 121
           +A  DNS+K WIFD+ DG PR+LR R+GH  PP  ++FY    H L SA  DR+ R  S+
Sbjct: 306 TAGPDNSLKEWIFDSMDGAPRILRSRNGHYEPPSFVKFYGKSVHFLISAATDRSLRAVSL 365

Query: 122 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY 181
            QD QS ELSQ  V  +A+KL ++ EELKL  + A   +  RE+ W NV+T H + + A 
Sbjct: 366 YQDSQSTELSQGSVISKAKKLNVRPEELKLPEITALSSSNTREKYWDNVLTAHKNDSSAR 425

Query: 182 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYL 241
            W  ++  LG+H+L P  +  T+V++  +S CGNF ++G++ G ++ +N+QSGI R S+ 
Sbjct: 426 TWNWKSKTLGQHVL-PTSDG-TSVRSVCVSCCGNFGLIGSSKGVVDVYNMQSGIKRKSFG 483

Query: 242 DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVY 301
             S          V  V  D+ N ++++A   G +K WDF   +L    +VG S+   +Y
Sbjct: 484 QSS-----LSGKPVTAVMLDNVNRILVTASLDGILKFWDFNKGNLIDSLDVGSSITHAIY 538

Query: 302 HRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRI 361
              + L+A   DD  IR+ DV   ++VR+  GH++R+T F FS+ G+WL+++ +DG++R 
Sbjct: 539 QHSSDLVAVACDDFGIRIVDVQTRKIVRELWGHSNRLTSFDFSDTGRWLVTASLDGTIRT 598

Query: 362 WDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYAS 421
           WD+     ID+I      T+L+ +P  D LAT HVDQ G+ LW N  MF   S       
Sbjct: 599 WDLPTGHLIDSISTPSVCTSLTFAPTGDYLATTHVDQVGISLWTNLSMFKHVST--KALR 656

Query: 422 GKEIVSVKMPSVSS------VEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTL 475
             ++V V  PSVS       VE   +  S+  D        ++     T  Q  P+L TL
Sbjct: 657 LDDVVEVSAPSVSGEKGISVVEAALNVESNAED--------EEDISYRTMDQLDPNLQTL 708

Query: 476 SLLPKSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEILFKPSESTKEDTE 535
           S LP++QWQ+LINL+ IKARN P E PK PEKAPFFLPS+   S   + K   +T+    
Sbjct: 709 SKLPRTQWQTLINLEAIKARNAPKEVPKVPEKAPFFLPSLKDQSEATVPKQPIATEISKP 768

Query: 536 SLKVGNKTKPDIPVSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDH 595
           +     K    +  ++F  LLH   +     AF +Y+KSL P+ +D+E+R          
Sbjct: 769 TAVASIK----VSGTEFSTLLHGNDD----DAFFEYLKSLGPAKIDLEIR---------- 810

Query: 596 QELDKRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKARKL 655
             LD  P Y    L ++ +   +S R +FE +QA + +F K H + +  H   +D     
Sbjct: 811 -SLDAYPPYEEFILFINIMTRRLSKRRDFELVQACMSVFTKSHEDVLLMHDTPEDTVPVF 869

Query: 656 LEVQSAVWQKIDK 668
             +++  W+ + K
Sbjct: 870 ESLKA--WESVHK 880

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q8NI36|WDR36_HUMAN WD repeat-containing protein 36 OS=Homo sapiens GN=WDR36 PE=1 SV=1

 Score =  378 bits (971), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 232/692 (33%), Positives = 372/692 (53%), Gaps = 39/692 (5%)

Query: 3   GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLM 62
           G +T+++F +DG P++A+G+  G I +W+LE ++L + +R AH  AI  L F   EP+L+
Sbjct: 290 GPITSISFRTDGHPVMAAGSPCGHIGLWDLEDKKLINQMRNAHSTAIAGLTFLHREPLLV 349

Query: 63  SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSV 121
           +  ADN++++WIFD   G+ RLLRFR GHSAP   IR+Y  NG+ ILSA QD   + FS 
Sbjct: 350 TNGADNALRIWIFDGPTGEGRLLRFRMGHSAPLTNIRYYGQNGQQILSASQDGTLQSFST 409

Query: 122 IQDQQSRELSQRHVAKRARKLKMKEEEL--KLKPVIAFDCAEIRERDWCNVVTCHMDTAQ 179
           + ++ ++ L    + K+  K K  +  +  +L P+  F   E RE DW  ++ CH     
Sbjct: 410 VHEKFNKSLGHGLINKKRVKRKGLQNTMSVRLPPITKFAAEEARESDWDGIIACHQGKLS 469

Query: 180 AYVWRLQNFVLGEHILRP--CPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR 237
              W  Q   +G + L+P    ++     A  I++CGNFAV+G + G ++ +N+QSGI R
Sbjct: 470 CSTWNYQKSTIGAYFLKPKELKKDDITATAVDITSCGNFAVIGLSSGTVDVYNMQSGIHR 529

Query: 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLV 297
           GS+       + AH G V GVA D  N L ++ G  G +K W+FK + L     +  S  
Sbjct: 530 GSF-----GKDQAHKGSVRGVAVDGLNQLTVTTGSEGLLKFWNFKNKILIHSVSLSSSPN 584

Query: 298 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG 357
            ++ HR +G+L    DD  I + D+   ++VR+F GH  +I D  FS DG+WL+S+ MD 
Sbjct: 585 IMLLHRDSGILGLALDDFSISVLDIETRKIVREFSGHQGQINDMAFSPDGRWLISAAMDC 644

Query: 358 SLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNID 417
           S+R WD+     ID   +D +   +S+SP  D LAT+HVD  G+YLW N  ++       
Sbjct: 645 SIRTWDLPSGCLIDCFLLDSAPLNVSMSPTGDFLATSHVDHLGIYLWSNISLY------- 697

Query: 418 SYASGKEIVSVKMPSVSSVEG---CQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVT 474
           S  S + + +  +PS+  + G    QD   S+  V  +D + +  +  P  +Q    LVT
Sbjct: 698 SVVSLRPLPADYVPSIVMLPGTCQTQDVEVSEETVEPSDELIE--YDSP--EQLNEQLVT 753

Query: 475 LSLLPKSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEILFKPSESTKEDT 534
           LSLLP+S+W++L+NLD+IK +NKP EPPK P+ APFF+P++P L          +  + +
Sbjct: 754 LSLLPESRWKNLLNLDVIKKKNKPKEPPKVPKSAPFFIPTIPGLVPRYAAPEQNNDPQQS 813

Query: 535 ESLKVGNKTKPDIPVSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDD 594
           + + +G   +     S F   L        +    + +K   PS ++ ELR L     D 
Sbjct: 814 KVVNLGVLAQK----SDFCLKLEEGLVNNKYDTALNLLKESGPSGIETELRSL---SPDC 866

Query: 595 HQELDKRPEYLS-IELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKAR 653
              ++    +L  I ++LD        + +FE  QA + LFLK+H + +     L ++  
Sbjct: 867 GGSIEVMQSFLKMIGMMLDR-------KRDFELAQAYLALFLKLHLKMLPSEPVLLEEIT 919

Query: 654 KLLEVQSAVWQKIDKMFQSARCVVSFLSNSQL 685
            L       W  +  +F  + C++++L ++ L
Sbjct: 920 NLSSQVEENWTHLQSLFNQSMCILNYLKSALL 951

Involved in T-cell activation and highly co-regulated with IL2.

Homo sapiens (taxid: 9606)

>sp|Q06078|UTP21_YEAST U3 small nucleolar RNA-associated protein 21 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UTP21 PE=1 SV=1

 Score =  328 bits (841), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 220/690 (31%), Positives = 347/690 (50%), Gaps = 70/690 (10%)

Query: 5   VTALAFSSDGQPLLASGASSGVISIWNLEKRR----LQSVIREAHDNAIISLHFFANEPV 60
           +++L+F +DG   L+ G SSG +  ++L++R     L+++ RE++   +    F   +P+
Sbjct: 251 ISSLSFRTDGSSHLSVGTSSGDLIFYDLDRRSRIHVLKNIHRESY-GGVTQATFLNGQPI 309

Query: 61  LMSASADNSIKMWIFDTT----DGD-----PRLLRFRSGHSAPPLCIRFYANGRH-ILSA 110
           ++++  DNS+K ++FD +     GD     PR LR R GHS PP  I F  +  H +LSA
Sbjct: 310 IVTSGGDNSLKEYVFDPSLSQGSGDVVVQPPRYLRSRGGHSQPPSYIAFADSQSHFMLSA 369

Query: 111 GQDRAFRLFSVIQDQQSRELSQR-HVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCN 169
            +DR+   FS+ +D QS+E+SQR H  +   ++     + K   ++A      R  +W N
Sbjct: 370 SKDRSLWSFSLRKDAQSQEMSQRLHKKQDGGRVGGSTIKSKFPEIVALAIENARIGEWEN 429

Query: 170 VVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERF 229
           ++T H D   A  W ++N  +G        +    VK+  +S CGNF  +G++ G I  +
Sbjct: 430 IITAHKDEKFARTWDMRNKRVGRWTFDTTDDG--FVKSVAMSQCGNFGFIGSSNGSITIY 487

Query: 230 NLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSR 289
           N+QSGI R  Y          H   V G++ D  N  M+S G  G +  +DF    L  +
Sbjct: 488 NMQSGILRKKY--------KLHKRAVTGISLDGMNRKMVSCGLDGIVGFYDFNKSTLLGK 539

Query: 290 WEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKW 349
            ++   +  +VYHR + L A   DDL I + D V  R+VR+  GH++RIT F FS +G+W
Sbjct: 540 LKLDAPITAMVYHRSSDLFALALDDLSIVVIDAVTQRVVRQLWGHSNRITAFDFSPEGRW 599

Query: 350 LLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCM 409
           ++S+ +D ++R WD+     ID I VD   T +  SPN D+LAT HV  NG+ +W NR  
Sbjct: 600 IVSASLDSTIRTWDLPTGGCIDGIIVDNVATNVKFSPNGDLLATTHVTGNGICIWTNRAQ 659

Query: 410 FSGDS--NIDSYASGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQ 467
           F   S   ID      E   + +PS +SV G     S   + +  + +    F   T  +
Sbjct: 660 FKTVSTRTIDE----SEFARMALPS-TSVRGNDSMLSGALESNGGEDLNDIDFNTYTSLE 714

Query: 468 QI-PDLVTLSLLPKSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEILF-- 524
           QI  +L+TLS+ P+S+  +L++LD+I+ R+KP E PKK EK PFFL     LSGE +   
Sbjct: 715 QIDKELLTLSIGPRSKMNTLLHLDVIRKRSKPKEAPKKSEKLPFFL----QLSGEKVGDE 770

Query: 525 ----------KPSESTKEDTESLKV------GNKTKPDIPV---SQFIQLLHSCAEMKNF 565
                      P E  + D E+ K        NK K    +   S F + L   ++ K++
Sbjct: 771 ASVREGIAHETPEEIHRRDQEAQKKLDAEEQMNKFKVTGRLGFESHFTKQLREGSQSKDY 830

Query: 566 SAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEISCRNNFE 625
           S+    + + SP+ +D+E+R L   +  D            I   +D L   +    NFE
Sbjct: 831 SSLLATLINFSPAAVDLEIRSLNSFEPFDE-----------IVWFIDALTQGLKSNKNFE 879

Query: 626 FIQAVIRLFLKIHGETVRCHTKLQDKARKL 655
             +  + L  K HG+ +  + K QD A  L
Sbjct: 880 LYETFMSLLFKAHGDVIHANNKNQDIASAL 909

Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1

 Score = 95.5 bits (236), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 107/436 (24%), Positives = 189/436 (43%), Gaps = 55/436 (12%)

Query: 4    AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS 63
            AV +++FS DGQ + ASG S   I +W      L   I   H+  + +++F  +   L S
Sbjct: 1115 AVYSVSFSPDGQTI-ASGGSDKTIKLWQTSDGTLLKTI-TGHEQTVNNVYFSPDGKNLAS 1172

Query: 64   ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 123
            AS+D+SIK+W  DTT G  +LL   +GHSA  + +RF  +G+ I +  +D+  +L+    
Sbjct: 1173 ASSDHSIKLW--DTTSG--QLLMTLTGHSAGVITVRFSPDGQTIAAGSEDKTVKLW---- 1224

Query: 124  DQQSRELSQRHVAKRARKLKMKEE---ELKLKP---VIAFDCAEIRERDW-------CNV 170
                     R   K  + L   ++    L   P    +A   A+   + W          
Sbjct: 1225 --------HRQDGKLLKTLNGHQDWVNSLSFSPDGKTLASASADKTIKLWRIADGKLVKT 1276

Query: 171  VTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG-WIERF 229
            +  H D+    VW +     G+ I     +N   +K             G +GG +   F
Sbjct: 1277 LKGHNDS----VWDVNFSSDGKAIASASRDN--TIKLWNRHGIELETFTGHSGGVYAVNF 1330

Query: 230  NLQSGISRGSYLDMSER----------SNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW 279
               S I   + LD + R             A N  V  V+     +++ +AG  G+I++W
Sbjct: 1331 LPDSNIIASASLDNTIRLWQRPLISPLEVLAGNSGVYAVSFLHDGSIIATAGADGNIQLW 1390

Query: 280  DFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRIT 339
              +   L        ++  I +     L+A+   D  ++++ V   + ++   GH + + 
Sbjct: 1391 HSQDGSLLKTLPGNKAIYGISFTPQGDLIASANADKTVKIWRVRDGKALKTLIGHDNEVN 1450

Query: 340  DFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI--HVDVSITALSLSPNMDVLATAHVD 397
               FS DGK L S+  D ++++W+V   +    +  H D  +  +S SP+  ++A+A  D
Sbjct: 1451 KVNFSPDGKTLASASRDNTVKLWNVSDGKFKKTLKGHTD-EVFWVSFSPDGKIIASASAD 1509

Query: 398  QNGVYLWVNRCMFSGD 413
            +  + LW +   FSG+
Sbjct: 1510 KT-IRLWDS---FSGN 1521

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score = 83.6 bits (205), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 93/403 (23%), Positives = 166/403 (41%), Gaps = 45/403 (11%)

Query: 5    VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA 64
            V  + FS DG+ L + GA   V  +W++        +   H++ + S+ F  +   L SA
Sbjct: 687  VRFVVFSPDGEILASCGADENV-KLWSVRDGVCIKTL-TGHEHEVFSVAFHPDGETLASA 744

Query: 65   SADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQD 124
            S D +IK+W  D  DG    L+  +GH+    C+ F  +G  + S+  D   +L+ V Q 
Sbjct: 745  SGDKTIKLW--DIQDGT--CLQTLTGHTDWVRCVAFSPDGNTLASSAADHTIKLWDVSQG 800

Query: 125  QQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR 184
            +  R L       R+       + L      A    +   + W                 
Sbjct: 801  KCLRTLKSHTGWVRSVAFSADGQTL------ASGSGDRTIKIW----------------- 837

Query: 185  LQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMS 244
              N+  GE  L+    +  +V +   S      V G+    I+ ++ Q+ I         
Sbjct: 838  --NYHTGE-CLKTYIGHTNSVYSIAYSPDSKILVSGSGDRTIKLWDCQTHICI------- 887

Query: 245  ERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK-GRDLKSRWEVGCSLVKIVYHR 303
             ++ + H  EV  VA       +        +++W+ + G+ LK+ +      + + +  
Sbjct: 888  -KTLHGHTNEVCSVAFSPDGQTLACVSLDQSVRLWNCRTGQCLKAWYGNTDWALPVAFSP 946

Query: 304  VNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 363
               +LA+ ++D  ++L+D    + +   EGHTD I    FS D + L S+  D S+R+W+
Sbjct: 947  DRQILASGSNDKTVKLWDWQTGKYISSLEGHTDFIYGIAFSPDSQTLASASTDSSVRLWN 1006

Query: 364  VILAR--QIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLW 404
            +   +  QI   H D  + A+   P   ++AT   D   V LW
Sbjct: 1007 ISTGQCFQILLEHTDW-VYAVVFHPQGKIIATGSADCT-VKLW 1047

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q7ZUV2|KTNB1_DANRE Katanin p80 WD40 repeat-containing subunit B1 OS=Danio rerio GN=katnb1 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 79/157 (50%), Gaps = 3/157 (1%)

Query: 250 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG-RDLKSRWEVGCSLVKIVYHRVNGLL 308
            H   V  +  +S+   +++    G +++WD +  + L++      S+  + +H +   L
Sbjct: 61  GHTSAVGCIQFNSSEERVVAGSLSGSLRLWDLEAAKILRTLMGHKASISSLDFHPMGEYL 120

Query: 309 ATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR 368
           A+ + D  I+L+DV     V +++GHT  +    FS DGKWL S+  D ++++WD+I  +
Sbjct: 121 ASGSVDSNIKLWDVRRKGCVFRYKGHTQAVRCLAFSPDGKWLASASDDSTVKLWDLIAGK 180

Query: 369 QIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLW 404
            I       S +  +   PN  +LA+   D+  V LW
Sbjct: 181 MITEFTSHTSAVNVVQFHPNEYLLASGSADRT-VKLW 216

Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.

Danio rerio (taxid: 7955)

>sp|F6ZT52|POC1B_XENTR POC1 centriolar protein homolog B OS=Xenopus tropicalis GN=poc1b PE=2 SV=1

 Score = 70.9 bits (172), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 126/332 (37%), Gaps = 40/332 (12%)

Query: 32  LEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGH 91
           LE   LQ   +  H +A+  + F  +   L S+SAD  + +W F       R  ++  GH
Sbjct: 5   LEDPALQRHFK-GHKDAVTYVDFSPDGKQLASSSADACVMIWNFKPQS---RAYKY-PGH 59

Query: 92  SAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL 151
                C++F  +G  + S+ +DR  RL+                   A  +K +   LK 
Sbjct: 60  KEAVTCVQFSPSGHLVASSSKDRTVRLW-------------------APNIKGESSVLKA 100

Query: 152 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS 211
              +   C      D    +T   D      W L      +  L    E+   V+    S
Sbjct: 101 HTAVV-RCVNFSS-DGHTFITA-SDDKSIKAWNLHR----QRFLYSLTEHTNWVRCARFS 153

Query: 212 ACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG 271
             G      +    +  +++ + +   +++D    SNY        V  +   T + SAG
Sbjct: 154 PDGRLIASCSDDKTVRIWDITNRLCINTFVDYKGHSNY--------VDFNPMGTCVASAG 205

Query: 272 YHGDIKVWDFKGRDLKSRWEVGCSLVK-IVYHRVNGLLATVADDLVIRLFDVVALRMVRK 330
               +KVWD +   L   ++V  + V  + +H     L T ++D  +++ D++  R++  
Sbjct: 206 VDSTVKVWDIRTNKLLQHYQVHNAGVNSLSFHPSGNYLLTASNDGTVKILDLLEGRLIYT 265

Query: 331 FEGHTDRITDFCFSEDGKWLLSSGMDGSLRIW 362
             GH   +    FS+ G    S   D  + +W
Sbjct: 266 LHGHQGPVLSVAFSKSGDQFASGATDAQVLVW 297

Involved in early steps of centriole duplication, as well as in the later steps of centriole length control. Required for ciliogenesis.

Xenopus tropicalis (taxid: 8364)

>sp|Q9USN3|UTP13_SCHPO Probable U3 small nucleolar RNA-associated protein 13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=utp13 PE=3 SV=3

 Score = 70.9 bits (172), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 77/155 (49%), Gaps = 6/155 (3%)

Query: 246 RSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIV---YH 302
           +S  AH   V+ +  D TNTL+ + G  G +KVWD  G  +   +     ++  +    H
Sbjct: 97  KSMKAHETPVITMTIDPTNTLLATGGAEGLVKVWDIAGAYVTHSFRGHGGVISALCFGKH 156

Query: 303 RVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIW 362
           +   +LA+ ADD  +RL+D+ + R +  FEGH+  I    F   G +LLS   D ++++W
Sbjct: 157 QNTWVLASGADDSRVRLWDLNSSRSMAVFEGHSSVIRGLTFEPTGSFLLSGSRDKTVQVW 216

Query: 363 DV---ILARQIDAIHVDVSITALSLSPNMDVLATA 394
           ++      R I   H   +I  ++  P   +L TA
Sbjct: 217 NIKKRSAVRTIPVFHSVEAIGWVNGQPEEKILYTA 251

Involved in nucleolar processing of pre-18S ribosomal RNA.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q8BHD1|POC1B_MOUSE POC1 centriolar protein homolog B OS=Mus musculus GN=Poc1b PE=1 SV=1

 Score = 69.7 bits (169), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 137/353 (38%), Gaps = 47/353 (13%)

Query: 43  EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA 102
           + H  AI S  F  N   + +AS D  + +W   +     R  R+  GH      ++F  
Sbjct: 15  KGHKAAITSADFSPNCKQIATASWDTFLMLW---SLKPHARAYRY-VGHKDVVTSLQFSP 70

Query: 103 NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI 162
            G  + SA +DR  RL+ +                  RK K  E +    PV + D +  
Sbjct: 71  QGNLLASASRDRTVRLWVL-----------------DRKGKSSEFKAHTAPVRSVDFSA- 112

Query: 163 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA 222
              D   +VT   D +   VW +      +  L     +   V+    S  G   V  + 
Sbjct: 113 ---DGQLLVTASEDKS-IKVWSM----FRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSE 164

Query: 223 GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 282
              I+ ++  +     ++ D    +N+        V  +   T + SAG    +K+WD +
Sbjct: 165 DKTIKIWDTTNKQCVNNFSDSVGFANF--------VDFNPNGTCIASAGSDHAVKIWDIR 216

Query: 283 GRDLKSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDF 341
              L   ++V  C +  + +H +   L T + D  +++ D++  R++   +GHT  +   
Sbjct: 217 MNKLLQHYQVHSCGVNCLSFHPLGNSLVTASSDGTVKMLDLIEGRLIYTLQGHTGPVFTV 276

Query: 342 CFSEDGKWLLSSGMDGSLRIWDVIL--------ARQIDAIHVDVSITALSLSP 386
            FS+DG+ L S G D  + IW             R +  +H + S   L + P
Sbjct: 277 SFSKDGELLTSGGADAQVLIWRTNFIHLHCKDPKRNLKRLHFEASPHLLDIYP 329

Required for ciliogenesis.

Mus musculus (taxid: 10090)

>sp|Q5ZME8|SMU1_CHICK WD40 repeat-containing protein SMU1 OS=Gallus gallus GN=SMU1 PE=2 SV=1

 Score = 69.3 bits (168), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 84/163 (51%), Gaps = 4/163 (2%)

Query: 205 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 264
           V+    S  G + V G+  G+IE +N  +G  R   L    + N+    + V   C S +
Sbjct: 217 VECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKD-LKYQAQDNFMMMDDAVLCMCFSRD 275

Query: 265 TLMISAGYH-GDIKVWDFKGRDLKSRWEVGCS--LVKIVYHRVNGLLATVADDLVIRLFD 321
           T M++ G   G IKVW  +      R+E   S  +  + + + +  + + + D  IR+  
Sbjct: 276 TEMLATGAQDGKIKVWKIQSGQCLRRFERAHSKGVTCLSFSKDSSQILSASFDQTIRIHG 335

Query: 322 VVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 364
           + + + +++F GH+  + +  F++DG +++S+  DG++++W+V
Sbjct: 336 LKSGKTLKEFRGHSSFVNEATFTQDGHYIISASSDGTVKVWNV 378

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	685
224087343	910	predicted protein [Populus trichocarpa]	0.997	0.750	0.828	0.0
255587831	906	WD-repeat protein, putative [Ricinus com	0.992	0.750	0.823	0.0
225440418	905	PREDICTED: uncharacterized WD repeat-con	0.992	0.751	0.813	0.0
356496224	906	PREDICTED: uncharacterized WD repeat-con	0.994	0.751	0.774	0.0
356527435	907	PREDICTED: WD repeat-containing protein	0.994	0.750	0.784	0.0
449470306	891	PREDICTED: uncharacterized WD repeat-con	0.972	0.747	0.784	0.0
449507519	891	PREDICTED: uncharacterized WD repeat-con	0.972	0.747	0.782	0.0
224118738	906	predicted protein [Populus trichocarpa]	0.964	0.729	0.752	0.0
297813873	911	transducin family protein [Arabidopsis l	0.995	0.748	0.755	0.0
18412751	910	transducin/WD40 domain-containing protei	0.995	0.749	0.750	0.0

>gi|224087343|ref|XP_002308129.1| predicted protein [Populus trichocarpa] gi|222854105|gb|EEE91652.1| predicted protein [Populus trichocarpa]

 Score = 1180 bits (3053), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 572/690 (82%), Positives = 630/690 (91%), Gaps = 7/690 (1%)

Query: 1   MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPV 60
           MRGAVT+L+FS+DGQPLLASG SSGVISIWNLEKR+LQSV+REAHD++IISLHF ANEPV
Sbjct: 223 MRGAVTSLSFSTDGQPLLASGGSSGVISIWNLEKRKLQSVVREAHDSSIISLHFLANEPV 282

Query: 61  LMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS 120
           LMS+SADNSIK+WIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS
Sbjct: 283 LMSSSADNSIKIWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS 342

Query: 121 VIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQA 180
           VIQDQQSRELSQRHV+KRA+KL++KEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQA
Sbjct: 343 VIQDQQSRELSQRHVSKRAKKLRVKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQA 402

Query: 181 YVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 240
           YVWRLQNFV+GEHILRPCPEN T VKACTISACGNFA+LGTAGGWIERFNLQSGISRGSY
Sbjct: 403 YVWRLQNFVIGEHILRPCPENLTPVKACTISACGNFAILGTAGGWIERFNLQSGISRGSY 462

Query: 241 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIV 300
           +D+SER + AH  EVVGVACDSTNT MISAGYHGD+KVWDFKGR LKSRWEVGCSLVKIV
Sbjct: 463 MDVSERGSCAHESEVVGVACDSTNTQMISAGYHGDVKVWDFKGRALKSRWEVGCSLVKIV 522

Query: 301 YHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLR 360
           YHR+NGLLATVADD VIRLFD VALRMVRKFEGH DRITD CFSEDGKWLLSS MDG+LR
Sbjct: 523 YHRLNGLLATVADDFVIRLFDAVALRMVRKFEGHADRITDLCFSEDGKWLLSSSMDGTLR 582

Query: 361 IWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYA 420
           IWDVILARQIDA+HVDVSITALSLSPNMDVLAT HVDQNGVYLWVN+ MFSG SNIDSYA
Sbjct: 583 IWDVILARQIDAVHVDVSITALSLSPNMDVLATTHVDQNGVYLWVNQSMFSGASNIDSYA 642

Query: 421 SGKEIVSVKMPSVSSVEG--CQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLL 478
           SGKE+V+VK+PS+SSVEG   ++E++ +P V+++  V  +    P F QQIPDLVTLSLL
Sbjct: 643 SGKEVVNVKLPSLSSVEGSNVENEDTEKPIVNQS--VSNEVSTFPAFSQQIPDLVTLSLL 700

Query: 479 PKSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEILFKPSESTK-EDTESL 537
           PKSQWQSLINLDIIK RNKPIEPPKKPEKAPFFLPSVPSLSGEILFKPSE    EDT+  
Sbjct: 701 PKSQWQSLINLDIIKVRNKPIEPPKKPEKAPFFLPSVPSLSGEILFKPSEPVDGEDTKPD 760

Query: 538 KV-GNKTKPDIPVSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQII-DHDDH 595
           K   +K K  IP +QF++LL S +EMKNFSAFT+YIK LSPS LDMELRM QII + +D 
Sbjct: 761 KAESDKRKLGIPETQFLELLQSSSEMKNFSAFTEYIKGLSPSNLDMELRMFQIIDEDEDE 820

Query: 596 QELDKRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKARKL 655
           +EL KRPE++SIELLLDY IHEISCRNNFEF+QAV RLFLKIHGET+RC++KLQDKARKL
Sbjct: 821 EELVKRPEFISIELLLDYFIHEISCRNNFEFVQAVTRLFLKIHGETIRCNSKLQDKARKL 880

Query: 656 LEVQSAVWQKIDKMFQSARCVVSFLSNSQL 685
           L+ QSAVWQ++DK+FQSARC+V+FLSNSQ 
Sbjct: 881 LDTQSAVWQRVDKLFQSARCMVTFLSNSQF 910

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587831|ref|XP_002534411.1| WD-repeat protein, putative [Ricinus communis] gi|223525346|gb|EEF27972.1| WD-repeat protein, putative [Ricinus communis]

 Score = 1170 bits (3028), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 566/687 (82%), Positives = 627/687 (91%), Gaps = 7/687 (1%)

Query: 2   RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL 61
           RGAVTAL FS+DGQPLLASG+SSGVISIWNLEKRRLQ+VIREAHDN+IISLHFFANEPVL
Sbjct: 224 RGAVTALCFSTDGQPLLASGSSSGVISIWNLEKRRLQTVIREAHDNSIISLHFFANEPVL 283

Query: 62  MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 121
           MS SADNSIKMWIFDTTDGDPRLLRFRSGHSAPP CIRFYANGRHILSAGQDRAFRLFS+
Sbjct: 284 MSGSADNSIKMWIFDTTDGDPRLLRFRSGHSAPPHCIRFYANGRHILSAGQDRAFRLFSI 343

Query: 122 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY 181
           IQDQQSRELSQRH++KRA+KL++KEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY
Sbjct: 344 IQDQQSRELSQRHISKRAKKLRLKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY 403

Query: 182 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYL 241
           VWRLQNFVLGEHILRPCPENPT VKACTISACGNFAV+GTAGGWIERFNLQSGISRGSY+
Sbjct: 404 VWRLQNFVLGEHILRPCPENPTPVKACTISACGNFAVIGTAGGWIERFNLQSGISRGSYV 463

Query: 242 DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVY 301
           D+SE+S+ AH GEVVGVACDSTNTLMISAGYHGD+KVWDFKG +LKSRWEVGCSLV+IVY
Sbjct: 464 DVSEKSSCAHEGEVVGVACDSTNTLMISAGYHGDVKVWDFKGLELKSRWEVGCSLVQIVY 523

Query: 302 HRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRI 361
           HR+NGLLATVADDLVIRLFDVVALRMVRKFEGHTDR+TD CFSEDGKWLLSS MDG+LRI
Sbjct: 524 HRLNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRVTDLCFSEDGKWLLSSSMDGTLRI 583

Query: 362 WDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYAS 421
           WDVILARQIDAIHVDV ITALSLS N+D+LAT HVDQNGVYLWVN+ MFSG S++DSYAS
Sbjct: 584 WDVILARQIDAIHVDVPITALSLSQNLDILATTHVDQNGVYLWVNQSMFSGVSSVDSYAS 643

Query: 422 GKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKS 481
           GKE+VSVKMPSVSSVEG + ++S +P +  T      +  LP F QQ+P+LVTLSLLP+S
Sbjct: 644 GKEVVSVKMPSVSSVEGSEAQDSDKPTMQPTQY--DGASHLPVFNQQMPELVTLSLLPRS 701

Query: 482 QWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEILFKPSESTKEDTES---LK 538
           QWQ LINLDIIK RNKPIEPPKKPE APFFLPS+PSLSGEILFKPSE+  E+  +   ++
Sbjct: 702 QWQGLINLDIIKVRNKPIEPPKKPENAPFFLPSIPSLSGEILFKPSETMNEEKNTSADVE 761

Query: 539 VGNKTKPDIPVSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQEL 598
             N    D+P SQF+QLL S A+M+NFSAFTDYIK LSPSTLD+ELRMLQIID D   +L
Sbjct: 762 EHNHRHVDLPPSQFLQLLQSSAKMENFSAFTDYIKGLSPSTLDLELRMLQIIDDDG--QL 819

Query: 599 DKRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKARKLLEV 658
           +KRPE+L+IELLLDY IHEISCRNNFEF+QA+IRLFLKIHGET+RC +KLQDKARKLL+ 
Sbjct: 820 EKRPEFLAIELLLDYFIHEISCRNNFEFVQAIIRLFLKIHGETIRCQSKLQDKARKLLDA 879

Query: 659 QSAVWQKIDKMFQSARCVVSFLSNSQL 685
           Q AVWQ++DK+FQS RC+V+FLSNSQ 
Sbjct: 880 QCAVWQRVDKLFQSTRCMVTFLSNSQF 906

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440418|ref|XP_002269448.1| PREDICTED: uncharacterized WD repeat-containing protein C1672.07 isoform 1 [Vitis vinifera] gi|297740341|emb|CBI30523.3| unnamed protein product [Vitis vinifera]

 Score = 1158 bits (2996), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 558/686 (81%), Positives = 618/686 (90%), Gaps = 6/686 (0%)

Query: 2   RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL 61
           RGAVTAL+FS+DG+PL+ASG SSGVISIWNLEKRRLQSVIREAHD++IISLHFFANEPVL
Sbjct: 224 RGAVTALSFSTDGRPLVASGGSSGVISIWNLEKRRLQSVIREAHDSSIISLHFFANEPVL 283

Query: 62  MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 121
           MS+SADNSIKMWIFDT+DGDPRLLRFRSGHSAPPLCI FYANGRH+LSAGQDRAFRLFSV
Sbjct: 284 MSSSADNSIKMWIFDTSDGDPRLLRFRSGHSAPPLCISFYANGRHVLSAGQDRAFRLFSV 343

Query: 122 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY 181
           IQDQQSRELSQRHV KRA+KL++KEEE+KLKPVIAFD AEIRERDWCNVVTCHMDTAQAY
Sbjct: 344 IQDQQSRELSQRHVTKRAKKLRVKEEEIKLKPVIAFDFAEIRERDWCNVVTCHMDTAQAY 403

Query: 182 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYL 241
           VWRLQNFVLGEHIL+PCPEN + VKAC ISACGNFAVLGTAGGWIERFNLQSGISRGSY+
Sbjct: 404 VWRLQNFVLGEHILKPCPENQSPVKACAISACGNFAVLGTAGGWIERFNLQSGISRGSYV 463

Query: 242 DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVY 301
           D+SER + AH+GEVVGVACDSTNTLMISAGYHGDIKVWDFKGR+LKSRWE+GC++VKIVY
Sbjct: 464 DLSERRSCAHDGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRELKSRWEIGCAVVKIVY 523

Query: 302 HRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRI 361
           HR NGLLAT  DDLVIRLFDVVALRMVRKFEGH DR+TD CFSEDGKWLL+S MDG+LRI
Sbjct: 524 HRSNGLLATATDDLVIRLFDVVALRMVRKFEGHIDRVTDLCFSEDGKWLLTSSMDGTLRI 583

Query: 362 WDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYAS 421
           WDVILARQIDAIHVDVS+TALSLSPNMDVLAT HVDQNGVYLWVN+ MFSG SNIDSYAS
Sbjct: 584 WDVILARQIDAIHVDVSVTALSLSPNMDVLATTHVDQNGVYLWVNQTMFSGSSNIDSYAS 643

Query: 422 GKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKS 481
           GKE+VSVK+PSVSS EG   ++S +PD++      +D F  P F ++IPDLVTLSLLPKS
Sbjct: 644 GKEVVSVKLPSVSSTEGSH-KDSEKPDLNHLQF--RDDFQNPHFHEKIPDLVTLSLLPKS 700

Query: 482 QWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEILFKPSE--STKEDTESLKV 539
           QWQSLINLDIIK RNKPIEPP K EKAPFFLPSVP+LSG+I+F+PSE  S K   E  ++
Sbjct: 701 QWQSLINLDIIKIRNKPIEPPTKAEKAPFFLPSVPTLSGQIVFEPSEISSEKRVAEGDEL 760

Query: 540 GNKTKPDIPVSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELD 599
            N ++ D+P SQF+QLL S A  K+FS FTDYIKSLSPSTLD+ELRMLQIID D+ QE D
Sbjct: 761 EN-SRSDLPQSQFLQLLQSSAVKKSFSVFTDYIKSLSPSTLDVELRMLQIIDDDNEQEPD 819

Query: 600 KRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKARKLLEVQ 659
            RP+   IELLLDY IHEISCRNNFEFIQAVIRLFLKIHGET+R  + LQDKA+KLLEVQ
Sbjct: 820 TRPDLFPIELLLDYFIHEISCRNNFEFIQAVIRLFLKIHGETIRRQSNLQDKAKKLLEVQ 879

Query: 660 SAVWQKIDKMFQSARCVVSFLSNSQL 685
            AVWQ +DK+FQS+RC+V+FLSNSQ 
Sbjct: 880 CAVWQSVDKLFQSSRCMVTFLSNSQF 905

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496224|ref|XP_003516969.1| PREDICTED: uncharacterized WD repeat-containing protein C1672.07-like [Glycine max]

 Score = 1117 bits (2890), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 531/686 (77%), Positives = 605/686 (88%), Gaps = 5/686 (0%)

Query: 2   RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL 61
           RG+VT+L+FS+DGQPLLASG SSGVISIWNLEK+RLQSV+REAHD+ I SLHFFANEPVL
Sbjct: 224 RGSVTSLSFSTDGQPLLASGGSSGVISIWNLEKKRLQSVVREAHDSVITSLHFFANEPVL 283

Query: 62  MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 121
           MS+SADNS+KMWIFDT+DGDPRLLRFRSGHSAPP C++FYANGRHILSAGQDRAFRLFSV
Sbjct: 284 MSSSADNSVKMWIFDTSDGDPRLLRFRSGHSAPPFCLKFYANGRHILSAGQDRAFRLFSV 343

Query: 122 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY 181
           +QDQQSRELSQ HV+KRARKLK+KEEE+KLKP+IAFDCAEIRERDWCNVVTCHMDTAQAY
Sbjct: 344 VQDQQSRELSQWHVSKRARKLKLKEEEIKLKPMIAFDCAEIRERDWCNVVTCHMDTAQAY 403

Query: 182 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYL 241
           +WRLQNFVLGEHIL PCPENPT VKAC ISACGNF  LGTAGGWIERFNLQSGI RG+Y+
Sbjct: 404 LWRLQNFVLGEHILNPCPENPTPVKACAISACGNFVFLGTAGGWIERFNLQSGICRGAYI 463

Query: 242 DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVY 301
           D+SE  + AH+GEVVGVACDSTNTLMISAGY GDIKVWDFK RDLK++W+VGCS+VKIVY
Sbjct: 464 DISESRSCAHDGEVVGVACDSTNTLMISAGYEGDIKVWDFKERDLKTKWDVGCSVVKIVY 523

Query: 302 HRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRI 361
           HR NGLLATVADDL IRLFDVVALR+VRKFEGHTDRITD CFSEDGKWLLSS MDGSLRI
Sbjct: 524 HRYNGLLATVADDLTIRLFDVVALRLVRKFEGHTDRITDLCFSEDGKWLLSSSMDGSLRI 583

Query: 362 WDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYAS 421
           WDVILARQIDAI VD SITALSLSPNMD+LAT HVDQNG+YLWVN+ MFS  SN+DS AS
Sbjct: 584 WDVILARQIDAIQVDASITALSLSPNMDILATTHVDQNGIYLWVNQAMFSSTSNVDSCAS 643

Query: 422 GKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKS 481
           GKE+VSV +PS+SS E  +DE+  +P V+ +   PKD+   PT  +QIP+LVTLSLLPKS
Sbjct: 644 GKEVVSVTLPSISSAEHSRDEHYDEP-VNASQ--PKDALHFPTQDKQIPELVTLSLLPKS 700

Query: 482 QWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEILFKPSESTKEDTESLKVGN 541
           QWQ+LINLDIIK RNKP EPPKKPEKAPFFLPSVPSLSGEILF+  + + ++ +    G 
Sbjct: 701 QWQNLINLDIIKVRNKPTEPPKKPEKAPFFLPSVPSLSGEILFESGKLSIKENDGTDDGK 760

Query: 542 --KTKPDIPVSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELD 599
             KT+ D+P S+F+ LL    E  N++AFTDYIK LSPS+LDMELRM QIID DD QE +
Sbjct: 761 QMKTRLDMPQSRFLYLLQCSKETDNYAAFTDYIKGLSPSSLDMELRMFQIIDDDDQQEAE 820

Query: 600 KRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKARKLLEVQ 659
           KRPE +SI  LLDY IHE+S RNNFEF+QAV+RLFLKIHGET+R  + LQ+KARKLL++Q
Sbjct: 821 KRPELVSIGWLLDYFIHELSSRNNFEFLQAVMRLFLKIHGETIRQQSCLQEKARKLLDIQ 880

Query: 660 SAVWQKIDKMFQSARCVVSFLSNSQL 685
             VWQ++DK+FQS+RCV++FLSNSQ+
Sbjct: 881 CMVWQRVDKLFQSSRCVIAFLSNSQI 906

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527435|ref|XP_003532316.1| PREDICTED: WD repeat-containing protein 36-like [Glycine max]

 Score = 1115 bits (2884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/687 (78%), Positives = 606/687 (88%), Gaps = 6/687 (0%)

Query: 2   RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL 61
           RG+VTAL+FS+DGQPLLASG SSGVISIWNLEK+RLQSV+REAHD+ I SLHFFANEPVL
Sbjct: 224 RGSVTALSFSTDGQPLLASGGSSGVISIWNLEKKRLQSVVREAHDSVITSLHFFANEPVL 283

Query: 62  MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 121
           MS+SADNSIKMWIFDT+DGDPRLLRFRSGHSAPPLCI+FYANGRHILSAGQDRAFRLFSV
Sbjct: 284 MSSSADNSIKMWIFDTSDGDPRLLRFRSGHSAPPLCIKFYANGRHILSAGQDRAFRLFSV 343

Query: 122 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY 181
           +QDQQSRELSQRHV+KRA+KLK+KEEE+KLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY
Sbjct: 344 VQDQQSRELSQRHVSKRAKKLKLKEEEIKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY 403

Query: 182 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYL 241
           VWRLQNFVLGEHIL PCPENPT VKAC ISACGNF  LGTAGGWIERFNLQSGI RG+Y+
Sbjct: 404 VWRLQNFVLGEHILNPCPENPTPVKACAISACGNFVFLGTAGGWIERFNLQSGIRRGAYI 463

Query: 242 DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVY 301
           D+SE  N AH+GEVVGVACDSTNTLMISAGY GDIKVW+FK RDLK+RW+V CS+VKIVY
Sbjct: 464 DISESRNCAHDGEVVGVACDSTNTLMISAGYKGDIKVWNFKERDLKTRWDVDCSIVKIVY 523

Query: 302 HRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRI 361
           HR NGLLATVADDL I+LFDVVALR+VRKFEGHTDRITD CFSEDGKWLLSS MDGSLRI
Sbjct: 524 HRYNGLLATVADDLTIQLFDVVALRLVRKFEGHTDRITDLCFSEDGKWLLSSSMDGSLRI 583

Query: 362 WDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYAS 421
           WDVILARQIDAIHVDV ITALSLSPNMD+LATAHVDQ+G+YLWVN+ MFS  SN+DSYAS
Sbjct: 584 WDVILARQIDAIHVDVPITALSLSPNMDILATAHVDQSGIYLWVNQAMFSSTSNVDSYAS 643

Query: 422 GKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKS 481
           GKE+VSVK+PS+SS E  +DE+  +P        PKD+    T  +QIP+LVTLSLLPKS
Sbjct: 644 GKEVVSVKLPSISSAEHSRDEHYDEP---MNASQPKDALYFSTQDKQIPELVTLSLLPKS 700

Query: 482 QWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEILFKPSESTKEDTESLKVGN 541
           QW +LINLDIIK RNKPIEPPKKPEKAPFFLPSVPSLSGEILF+  + + ++ +    G 
Sbjct: 701 QWLNLINLDIIKVRNKPIEPPKKPEKAPFFLPSVPSLSGEILFESGKLSLKENDGTDDGK 760

Query: 542 --KTKPDIPVSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRML-QIIDHDDHQEL 598
             KT+ D+P S+F+ LL    E  N++AFTDYIK LSPSTLDMELRM   I D DD QE 
Sbjct: 761 QMKTRLDMPQSRFLYLLQCSKETDNYAAFTDYIKGLSPSTLDMELRMFQIIDDDDDQQEA 820

Query: 599 DKRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKARKLLEV 658
           +KRPE +SIE LLDY IHE+SCRNNFEF+QAVIRLFLKIHGET+R  + LQ+KARKLL++
Sbjct: 821 EKRPELVSIEWLLDYFIHELSCRNNFEFLQAVIRLFLKIHGETIRQQSCLQEKARKLLDI 880

Query: 659 QSAVWQKIDKMFQSARCVVSFLSNSQL 685
           Q  VWQ++DK+FQS+RCV++FLSNSQ+
Sbjct: 881 QCMVWQRVDKLFQSSRCVIAFLSNSQI 907

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470306|ref|XP_004152858.1| PREDICTED: uncharacterized WD repeat-containing protein C1672.07-like [Cucumis sativus]

 Score = 1108 bits (2867), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/686 (78%), Positives = 594/686 (86%), Gaps = 20/686 (2%)

Query: 2   RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL 61
           RG+VTAL+FSSDGQPLLASG SSGVISIWNLEKRRLQSVIREAHD++I+SLHFFANEPVL
Sbjct: 224 RGSVTALSFSSDGQPLLASGGSSGVISIWNLEKRRLQSVIREAHDSSIVSLHFFANEPVL 283

Query: 62  MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 121
           MS+SADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV
Sbjct: 284 MSSSADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 343

Query: 122 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY 181
           IQDQQSRELSQRHV+KRA+KLK+KEEE+KLKPVIAFDCAEIRERDWCNVVTCH+DT QAY
Sbjct: 344 IQDQQSRELSQRHVSKRAKKLKLKEEEIKLKPVIAFDCAEIRERDWCNVVTCHVDTPQAY 403

Query: 182 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYL 241
           VWRLQNFVLGEHIL+PCPENPT VKAC ISACGNFA LGT GGWIERFNLQSG SRGSYL
Sbjct: 404 VWRLQNFVLGEHILKPCPENPTPVKACAISACGNFAFLGTEGGWIERFNLQSGASRGSYL 463

Query: 242 DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVY 301
           D  E  + AH GEVVG+ACDSTNT +ISAG HGDIKVW+FK RDLKSRWE+G S+ KIVY
Sbjct: 464 DKMEGGSCAHVGEVVGLACDSTNTHVISAGVHGDIKVWNFKERDLKSRWEIGSSVAKIVY 523

Query: 302 HRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRI 361
           HRVNGLLA V DDLVIRLFD+VALR+VRKFEGHTDRITD  FSEDGKWLLSS MDGSLRI
Sbjct: 524 HRVNGLLAVVTDDLVIRLFDIVALRLVRKFEGHTDRITDLSFSEDGKWLLSSSMDGSLRI 583

Query: 362 WDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYAS 421
           WDVILARQIDA+HVD SITA S+SPNMD+LAT HVDQNGVYLWVN+ MF+G SN+++ AS
Sbjct: 584 WDVILARQIDALHVDASITAFSISPNMDILATTHVDQNGVYLWVNQLMFTGSSNVNTLAS 643

Query: 422 GKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKS 481
           G E            E   +  S+ P+        KD   L    QQIPDL+TLSLLP+S
Sbjct: 644 GMEF-----------EDRVENPSNLPE-------SKDLSCLSISTQQIPDLITLSLLPRS 685

Query: 482 QWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEILFKPSESTKEDTESLKVGN 541
           QWQSLINLDIIK RNKPIEPPKKPEKAPFFLPS+PSLSGEILFKPSES  ++ E  +V +
Sbjct: 686 QWQSLINLDIIKVRNKPIEPPKKPEKAPFFLPSLPSLSGEILFKPSESANKEGEEKRVDS 745

Query: 542 --KTKPDIPVSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELD 599
             + K DI  SQF+QLL S +E KNFSAFTDYIK LSPSTLD+ELRMLQIID DDHQE  
Sbjct: 746 EQQKKSDITSSQFLQLLESSSETKNFSAFTDYIKGLSPSTLDLELRMLQIIDDDDHQEPA 805

Query: 600 KRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKARKLLEVQ 659
            RPE +SIELLLDY IHEI+ RNNFEFIQA+IRLFLKIHGETVRC   LQ+KA+KLL+VQ
Sbjct: 806 NRPELISIELLLDYFIHEITYRNNFEFIQALIRLFLKIHGETVRCQLTLQEKAKKLLDVQ 865

Query: 660 SAVWQKIDKMFQSARCVVSFLSNSQL 685
           ++VWQ +DK+FQS+RC+++FLSNSQ 
Sbjct: 866 TSVWQGLDKLFQSSRCMITFLSNSQF 891

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449507519|ref|XP_004163055.1| PREDICTED: uncharacterized WD repeat-containing protein C1672.07-like [Cucumis sativus]

 Score = 1107 bits (2863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/686 (78%), Positives = 594/686 (86%), Gaps = 20/686 (2%)

Query: 2   RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL 61
           RG+VTAL+FSSDGQPLLASG SSGVISIWNLEKRRLQSVIREAHD++I+SLHFFANEPVL
Sbjct: 224 RGSVTALSFSSDGQPLLASGGSSGVISIWNLEKRRLQSVIREAHDSSIVSLHFFANEPVL 283

Query: 62  MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 121
           MS+SADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV
Sbjct: 284 MSSSADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 343

Query: 122 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY 181
           IQDQQSRELSQRHV+KRA+KLK+KEEE+KLKPVIAFDCAEIRERDWCNVVTCH+DT QAY
Sbjct: 344 IQDQQSRELSQRHVSKRAKKLKLKEEEIKLKPVIAFDCAEIRERDWCNVVTCHVDTPQAY 403

Query: 182 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYL 241
           VWRLQNFVLGEHIL+PCPENPT VKAC ISACGNFA LGT GGWIERFNLQSG SRGSYL
Sbjct: 404 VWRLQNFVLGEHILKPCPENPTPVKACAISACGNFAFLGTEGGWIERFNLQSGASRGSYL 463

Query: 242 DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVY 301
           D  E  + AH GEVVG+ACDSTNT +ISAG HGDIKVW+FK RDLKSRWE+G S+ KIVY
Sbjct: 464 DKMEGGSCAHVGEVVGLACDSTNTHVISAGVHGDIKVWNFKERDLKSRWEIGSSVAKIVY 523

Query: 302 HRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRI 361
           HRVNGLLA V DDLVIRLFD+VALR+VRKFEGHTDRITD  FSEDGKWLLSS MDGSLRI
Sbjct: 524 HRVNGLLAVVTDDLVIRLFDIVALRLVRKFEGHTDRITDLSFSEDGKWLLSSSMDGSLRI 583

Query: 362 WDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYAS 421
           WDVILARQIDA+HVD SITA S+SPNMD+LAT HVDQNGVYLWVN+ MF+G SN+++ AS
Sbjct: 584 WDVILARQIDALHVDASITAFSISPNMDILATTHVDQNGVYLWVNQLMFTGSSNVNTLAS 643

Query: 422 GKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKS 481
           G E            E   +  S+ P+        KD   L    QQIPDL+TLSLLP+S
Sbjct: 644 GMEF-----------EDRVENPSNLPE-------SKDLSCLSISTQQIPDLITLSLLPRS 685

Query: 482 QWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEILFKPSESTKEDTESLKVGN 541
           QWQSLINLDIIK RNKPIEPPKKPEKAPFFLPS+PSLSGEILFKPSES  ++ E  +V +
Sbjct: 686 QWQSLINLDIIKVRNKPIEPPKKPEKAPFFLPSLPSLSGEILFKPSESANKEGEEKRVDS 745

Query: 542 --KTKPDIPVSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELD 599
             + K DI  SQF+QLL S +E KNFSAFTDYIK LSPSTLD+ELRMLQIID DDHQE  
Sbjct: 746 EQQKKSDITSSQFLQLLESSSETKNFSAFTDYIKGLSPSTLDLELRMLQIIDDDDHQEPA 805

Query: 600 KRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKARKLLEVQ 659
            RPE +SIELLLDY IHEI+ RNNFEFIQA+IRLFLKIHGETVRC   LQ+KA+KLL+V+
Sbjct: 806 NRPELISIELLLDYFIHEITYRNNFEFIQALIRLFLKIHGETVRCQLTLQEKAKKLLDVR 865

Query: 660 SAVWQKIDKMFQSARCVVSFLSNSQL 685
           ++VWQ +DK+FQS+RC+++FLSNSQ 
Sbjct: 866 TSVWQGLDKLFQSSRCMITFLSNSQF 891

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118738|ref|XP_002331434.1| predicted protein [Populus trichocarpa] gi|222873648|gb|EEF10779.1| predicted protein [Populus trichocarpa]

 Score = 1080 bits (2794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 531/706 (75%), Positives = 590/706 (83%), Gaps = 45/706 (6%)

Query: 2   RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL 61
           RGAVTAL+FS+DGQ LLASG SSGVISIWNLEKR+LQSV+REAHD++IISLHF ANEPVL
Sbjct: 224 RGAVTALSFSTDGQSLLASGGSSGVISIWNLEKRKLQSVVREAHDSSIISLHFLANEPVL 283

Query: 62  MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 121
           MS+SADNSIKMW+FDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV
Sbjct: 284 MSSSADNSIKMWVFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 343

Query: 122 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY 181
           IQDQQSRELSQ HV+KRA+KL++KEEELKLKPVIAFDCAEIRERDWCNVVTCH+DTAQAY
Sbjct: 344 IQDQQSRELSQHHVSKRAKKLRVKEEELKLKPVIAFDCAEIRERDWCNVVTCHIDTAQAY 403

Query: 182 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYL 241
           VW LQNFV+GEHILRPCPE PT VKACTISACGN A+LGTAGGWIERFNLQSGISRGSYL
Sbjct: 404 VWTLQNFVIGEHILRPCPEKPTPVKACTISACGNLAILGTAGGWIERFNLQSGISRGSYL 463

Query: 242 DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVY 301
           D+SER ++AH GEVVGVACDSTNTLMIS G+ G                   C  +K+  
Sbjct: 464 DVSERGSHAHEGEVVGVACDSTNTLMISLGFQGT------------------CIKIKMGS 505

Query: 302 HRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRI 361
              +GLLATVADDLVIRLFD +ALRMVRKFEGHTDRITD CFSEDGKWLLSS MDG+LRI
Sbjct: 506 WLFSGLLATVADDLVIRLFDAIALRMVRKFEGHTDRITDLCFSEDGKWLLSSSMDGTLRI 565

Query: 362 WDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYAS 421
           WDVILARQIDA+HV+VS+TALSLSPNMDVLAT HVDQNGVYLWVN+ MFSG S ID+YAS
Sbjct: 566 WDVILARQIDAVHVEVSVTALSLSPNMDVLATTHVDQNGVYLWVNQSMFSGASRIDAYAS 625

Query: 422 GKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKS 481
           GKE+V+VK+PS+ +VEG   EN           V K++   P F QQIPDLVTLSLLPKS
Sbjct: 626 GKEVVNVKLPSLIAVEGSNAENEDTDKSIVKHSVSKEASTFPAFSQQIPDLVTLSLLPKS 685

Query: 482 QWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEILFKPSE------STKEDTE 535
           QWQSLINLDIIK RNKPIEPPKKPEK PFFLPS+PSLSGEILFKPSE      S  ++TE
Sbjct: 686 QWQSLINLDIIKVRNKPIEPPKKPEKTPFFLPSIPSLSGEILFKPSEPVDGDDSKPDETE 745

Query: 536 SLKVGNKTKPDIPVSQFIQLLHSCAEMKN----------------FSAFTDYIKSLSPST 579
           S    ++ K DIP +QF++LL S +EMKN                 SAFT+YIK LSPS 
Sbjct: 746 S----DRRKLDIPPTQFLELLQSSSEMKNCEHSSPPYSCTILSQPVSAFTEYIKGLSPSN 801

Query: 580 LDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHG 639
           LDMELRM QIID D  +EL+ RPE++SIELLLDY IHEIS RNNFEF+QAVIRLFLKIHG
Sbjct: 802 LDMELRMFQIID-DYQEELETRPEFISIELLLDYFIHEISSRNNFEFVQAVIRLFLKIHG 860

Query: 640 ETVRCHTKLQDKARKLLEVQSAVWQKIDKMFQSARCVVSFLSNSQL 685
           ET+RC+ KLQDKA KLLE Q +VWQ++DK+FQSARC+V+FLSNSQ 
Sbjct: 861 ETIRCNLKLQDKASKLLETQCSVWQRVDKLFQSARCMVTFLSNSQF 906

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297813873|ref|XP_002874820.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297320657|gb|EFH51079.1| transducin family protein [Arabidopsis lyrata subsp. lyrata]

 Score = 1080 bits (2794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 521/690 (75%), Positives = 607/690 (87%), Gaps = 8/690 (1%)

Query: 2   RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL 61
           RGAVTAL+FS+DG+PLLASG S GVISIWNL K+RLQSVIR+AHD++IISL+F ANEPVL
Sbjct: 224 RGAVTALSFSTDGRPLLASGGSFGVISIWNLNKKRLQSVIRDAHDSSIISLNFLANEPVL 283

Query: 62  MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 121
           MSASADNS+KMWIFDT DGDPRLLRFRSGHSAPPLCIRFY+NGRHILSAGQDRAFRLFSV
Sbjct: 284 MSASADNSLKMWIFDTNDGDPRLLRFRSGHSAPPLCIRFYSNGRHILSAGQDRAFRLFSV 343

Query: 122 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY 181
           IQ+QQSRELSQRH+++RA+KL++K+EELKLKPV++FDCAEIRERDWCNVVTCHMDTA+AY
Sbjct: 344 IQEQQSRELSQRHISRRAKKLRLKDEELKLKPVVSFDCAEIRERDWCNVVTCHMDTAEAY 403

Query: 182 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYL 241
           VWRLQNFVLGEHIL+PCPENPT +KAC ISACGNFAV+GTAGGWIERFNLQSGISRGSY 
Sbjct: 404 VWRLQNFVLGEHILKPCPENPTPIKACAISACGNFAVVGTAGGWIERFNLQSGISRGSYF 463

Query: 242 DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVY 301
           DMSE+  YAH+GEV+GVACDSTNTLMISAGYHGDIKVWDFK R+LKS+W++GCSLVKIVY
Sbjct: 464 DMSEKRRYAHDGEVIGVACDSTNTLMISAGYHGDIKVWDFKKRELKSQWDIGCSLVKIVY 523

Query: 302 HRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRI 361
           HRVNGLLATVADD VIRL+DVVAL+MVR+F GHTDR+TD CFSEDGKWLLSS MDGSLRI
Sbjct: 524 HRVNGLLATVADDFVIRLYDVVALKMVREFRGHTDRVTDLCFSEDGKWLLSSSMDGSLRI 583

Query: 362 WDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYAS 421
           WDVILA+QID +HVDV ITALSLSPNMDVLATAH DQNGVYLWVN+ MFSG  +++SYAS
Sbjct: 584 WDVILAKQIDGVHVDVPITALSLSPNMDVLATAHSDQNGVYLWVNQSMFSGLPSVESYAS 643

Query: 422 GKEIVSVKMPSVSSVEGCQ--DENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLP 479
           GK++V+VK+PSVS++   +  D++  +  +  +  +   SF +    +QIP+LVTLSLLP
Sbjct: 644 GKDVVNVKLPSVSALTSSEADDDDMERQVLENSGALQASSFSIS--HKQIPELVTLSLLP 701

Query: 480 KSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEILFKP--SESTKEDTESL 537
           KSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPS+PSLSG+ILFK   SE+  E+ E  
Sbjct: 702 KSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSIPSLSGDILFKSNDSEADGENEEKN 761

Query: 538 KVGNKTKPDIPV--SQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDH 595
           K    +  +     S F +LL S  + K+F  FT+YIK+LSPS LDMELRML+IID D  
Sbjct: 762 KKDQNSMKNFDALESPFSKLLKSSWDSKHFLDFTNYIKTLSPSALDMELRMLEIIDEDIE 821

Query: 596 QELDKRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKARKL 655
           +EL KRPE++SI  LLDY I+E+SC+N+FEF+QAV+RLFLKIHGET+RCH  LQ+KA+KL
Sbjct: 822 EELIKRPEFISIGQLLDYFINEVSCKNDFEFMQAVVRLFLKIHGETIRCHPSLQEKAKKL 881

Query: 656 LEVQSAVWQKIDKMFQSARCVVSFLSNSQL 685
           LE QS VWQK++K+FQS RC+V+FLSNSQ 
Sbjct: 882 LETQSLVWQKMEKLFQSTRCIVTFLSNSQF 911

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18412751|ref|NP_567275.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|16604679|gb|AAL24132.1| putative WD-repeat membrane protein [Arabidopsis thaliana] gi|20465603|gb|AAM20284.1| putative WD-repeat membrane protein [Arabidopsis thaliana] gi|332657045|gb|AEE82445.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana]

 Score = 1078 bits (2789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/689 (75%), Positives = 607/689 (88%), Gaps = 7/689 (1%)

Query: 2   RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL 61
           RGAVTAL+FS+DG+PLLASG S GVISIWNL K+RLQSVIR+AHD++IISL+F ANEPVL
Sbjct: 224 RGAVTALSFSTDGRPLLASGGSFGVISIWNLNKKRLQSVIRDAHDSSIISLNFLANEPVL 283

Query: 62  MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 121
           MSASADNS+KMWIFDT DGDPRLLRFRSGHSAPPLCIRFY+NGRHILSAGQDRAFRLFSV
Sbjct: 284 MSASADNSLKMWIFDTNDGDPRLLRFRSGHSAPPLCIRFYSNGRHILSAGQDRAFRLFSV 343

Query: 122 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY 181
           IQ+QQSRELSQRH+++RA+KL++KEEELKLKPV++FDCAEIRERDWCNVVTCHMDTA+AY
Sbjct: 344 IQEQQSRELSQRHISRRAKKLRLKEEELKLKPVVSFDCAEIRERDWCNVVTCHMDTAEAY 403

Query: 182 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYL 241
           VWRLQNFVLGEHIL+PCPENPT +KAC ISACGNFAV+GTAGGWIERFNLQSGISRGSY 
Sbjct: 404 VWRLQNFVLGEHILKPCPENPTPIKACAISACGNFAVVGTAGGWIERFNLQSGISRGSYF 463

Query: 242 DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVY 301
           DMSE+  YAH+GEV+GVACDSTNTLMISAGYHGD+KVWDFK R+LKS+W+VGCSLVKIVY
Sbjct: 464 DMSEKRRYAHDGEVIGVACDSTNTLMISAGYHGDLKVWDFKKRELKSQWDVGCSLVKIVY 523

Query: 302 HRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRI 361
           HRVNGLLATVADD VIRL+DVV L+MVR+F GHTDRITD CFSEDGKW++SS MDGSLRI
Sbjct: 524 HRVNGLLATVADDFVIRLYDVVTLKMVREFRGHTDRITDLCFSEDGKWVISSSMDGSLRI 583

Query: 362 WDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYAS 421
           WDVILA+QID +HVDV ITALSLSPNMDVLATAH DQNGVYLWVN+ MFSG  +++SYAS
Sbjct: 584 WDVILAKQIDGVHVDVPITALSLSPNMDVLATAHSDQNGVYLWVNQSMFSGLPSVESYAS 643

Query: 422 GKEIVSVKMPSVSSVEGCQ-DENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPK 480
           GK++V+VK+PSVS++   + D++  +  +  ++ +   SF +   ++QIP+LVTLSLLPK
Sbjct: 644 GKDVVNVKLPSVSALTSSEADDDMDRQVLENSEALQASSFSIS--QKQIPELVTLSLLPK 701

Query: 481 SQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEILFKP--SESTKEDTESLK 538
           SQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPS+PSLSG+ILFK   SE+  E+ E+ K
Sbjct: 702 SQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSIPSLSGDILFKANDSEADGENEENNK 761

Query: 539 VGNKTKPDIPV--SQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQ 596
               +  +     S F + L S  + K+F  FT+Y+KSLSPS LDMELRML+IID D  +
Sbjct: 762 KDQNSMKNFDALESPFSKHLKSSWDSKHFLDFTNYMKSLSPSALDMELRMLEIIDEDVEE 821

Query: 597 ELDKRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKARKLL 656
           EL KRPE++ I  LLDY I+E+SC+N+FEF+QAV++LFLKIHGET+RCH  LQ+KA+KLL
Sbjct: 822 ELIKRPEFILIGQLLDYFINEVSCKNDFEFMQAVVKLFLKIHGETIRCHPSLQEKAKKLL 881

Query: 657 EVQSAVWQKIDKMFQSARCVVSFLSNSQL 685
           E QS VWQK++K+FQS RC+V+FLSNSQ 
Sbjct: 882 ETQSLVWQKMEKLFQSTRCIVTFLSNSQF 910

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	685
TAIR|locus:2135393	910	AT4G04940 "AT4G04940" [Arabido	0.994	0.748	0.725	5.8e-272
UNIPROTKB|F1NKR5	890	WDR36 "Uncharacterized protein	0.821	0.632	0.356	9.8e-97
POMBASE|SPCC1672.07	902	SPCC1672.07 "U3 snoRNP-associa	0.824	0.626	0.361	1.2e-95
UNIPROTKB|G3X6I6	948	WDR36 "Uncharacterized protein	0.824	0.595	0.358	1.4e-95
UNIPROTKB|Q8NI36	951	WDR36 "WD repeat-containing pr	0.824	0.594	0.342	7.9e-93
UNIPROTKB|F1PNT8	891	WDR36 "Uncharacterized protein	0.824	0.634	0.350	1.1e-92
UNIPROTKB|F1RLI4	952	WDR36 "Uncharacterized protein	0.858	0.617	0.345	3.9e-92
RGD|1586463	882	Wdr36 "WD repeat domain 36" [R	0.856	0.665	0.339	8.9e-92
FB|FBgn0038146	922	CG9799 [Drosophila melanogaste	0.957	0.711	0.318	2.2e-89
ZFIN|ZDB-GENE-030131-464	904	wdr36 "WD repeat domain 36" [D	0.827	0.627	0.346	2.8e-89

TAIR|locus:2135393 AT4G04940 "AT4G04940" [Arabidopsis thaliana (taxid:3702)]

 Score = 2615 (925.6 bits), Expect = 5.8e-272, P = 5.8e-272
 Identities = 499/688 (72%), Positives = 585/688 (85%)

Query:     2 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL 61
             RGAVTAL+FS+DG+PLLASG S GVISIWNL K+RLQSVIR+AHD++IISL+F ANEPVL
Sbjct:   224 RGAVTALSFSTDGRPLLASGGSFGVISIWNLNKKRLQSVIRDAHDSSIISLNFLANEPVL 283

Query:    62 MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 121
             MSASADNS+KMWIFDT DGDPRLLRFRSGHSAPPLCIRFY+NGRHILSAGQDRAFRLFSV
Sbjct:   284 MSASADNSLKMWIFDTNDGDPRLLRFRSGHSAPPLCIRFYSNGRHILSAGQDRAFRLFSV 343

Query:   122 IQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFDCAEIRERDWCNVVTCHMDTAQAY 181
             IQ+QQSRELSQRH+++RA+            PV++FDCAEIRERDWCNVVTCHMDTA+AY
Sbjct:   344 IQEQQSRELSQRHISRRAKKLRLKEEELKLKPVVSFDCAEIRERDWCNVVTCHMDTAEAY 403

Query:   182 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYL 241
             VWRLQNFVLGEHIL+PCPENPT +KAC ISACGNFAV+GTAGGWIERFNLQSGISRGSY 
Sbjct:   404 VWRLQNFVLGEHILKPCPENPTPIKACAISACGNFAVVGTAGGWIERFNLQSGISRGSYF 463

Query:   242 DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVY 301
             DMSE+  YAH+GEV+GVACDSTNTLMISAGYHGD+KVWDFK R+LKS+W+VGCSLVKIVY
Sbjct:   464 DMSEKRRYAHDGEVIGVACDSTNTLMISAGYHGDLKVWDFKKRELKSQWDVGCSLVKIVY 523

Query:   302 HRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRI 361
             HRVNGLLATVADD VIRL+DVV L+MVR+F GHTDRITD CFSEDGKW++SS MDGSLRI
Sbjct:   524 HRVNGLLATVADDFVIRLYDVVTLKMVREFRGHTDRITDLCFSEDGKWVISSSMDGSLRI 583

Query:   362 WDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYAS 421
             WDVILA+QID +HVDV ITALSLSPNMDVLATAH DQNGVYLWVN+ MFSG  +++SYAS
Sbjct:   584 WDVILAKQIDGVHVDVPITALSLSPNMDVLATAHSDQNGVYLWVNQSMFSGLPSVESYAS 643

Query:   422 GKEIVSVKMPSVSSVEGCQ-DENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPK 480
             GK++V+VK+PSVS++   + D++  +  +  ++ +   SF +   ++QIP+LVTLSLLPK
Sbjct:   644 GKDVVNVKLPSVSALTSSEADDDMDRQVLENSEALQASSFSIS--QKQIPELVTLSLLPK 701

Query:   481 SQWQSLINLDIIKARNXXXXXXXXXXXAPFFLPSVPSLSGEILFKP--SESTKEDTESLK 538
             SQWQSLINLDIIKARN           APFFLPS+PSLSG+ILFK   SE+  E+ E+ K
Sbjct:   702 SQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSIPSLSGDILFKANDSEADGENEENNK 761

Query:   539 VG-NKTKP-DIPVSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQ 596
                N  K  D   S F + L S  + K+F  FT+Y+KSLSPS LDMELRML+IID D  +
Sbjct:   762 KDQNSMKNFDALESPFSKHLKSSWDSKHFLDFTNYMKSLSPSALDMELRMLEIIDEDVEE 821

Query:   597 ELDKRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKARKLL 656
             EL KRPE++ I  LLDY I+E+SC+N+FEF+QAV++LFLKIHGET+RCH  LQ+KA+KLL
Sbjct:   822 ELIKRPEFILIGQLLDYFINEVSCKNDFEFMQAVVKLFLKIHGETIRCHPSLQEKAKKLL 881

Query:   657 EVQSAVWQKIDKMFQSARCVVSFLSNSQ 684
             E QS VWQK++K+FQS RC+V+FLSNSQ
Sbjct:   882 ETQSLVWQKMEKLFQSTRCIVTFLSNSQ 909

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006364 "rRNA processing" evidence=IEA

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

UNIPROTKB|F1NKR5 WDR36 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 937 (334.9 bits), Expect = 9.8e-97, Sum P(2) = 9.8e-97
 Identities = 212/595 (35%), Positives = 326/595 (54%)

Query:     3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLM 62
             G +TA++F +DG P++A+G+  G I++W+LE+++L S +R AH  A+  + F   EP+L+
Sbjct:   229 GPITAISFRTDGHPVMAAGSPVGHIALWDLEEKKLMSQMRNAHSTAVAGMSFVPGEPLLI 288

Query:    63 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSV 121
             +  ADN+I++WIFD   G  R+LR R GHSAPP  IR++  NG  ILSAGQD   + FS 
Sbjct:   289 TNGADNAIRVWIFDGPGGTGRVLRSRMGHSAPPTKIRYHGQNGEQILSAGQDGTLQSFST 348

Query:   122 IQDQQSRELSQRHV-AKRARXXXXXXXXXXXXPVIAFDCAEIRERDWCNVVTCHMDTAQA 180
             + ++ ++ L +  +  K+++            P+ AF      + DW  ++ CH      
Sbjct:   349 VHERFNKSLGRGSINKKKSKKKGLQHDTMALPPITAFASEVAHQNDWDGIIACHQGYITC 408

Query:   181 YVWRLQNFVLGEHILRP---CPENPTAVKACT--ISACGNFAVLGTAGGWIERFNLQSGI 235
               W  Q   +G H LRP       P  + A    I+ CGNFAV+G + G ++ +N+QSGI
Sbjct:   409 TTWNYQKTSMGAHKLRPEEFSKNKPIDIYATAVDITTCGNFAVIGMSTGQVDVYNMQSGI 468

Query:   236 SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCS 295
              RG Y    E+   AH G + GVA D  N L I+AG  G IK W FK +DL    ++  S
Sbjct:   469 HRGRY--GREK---AHEGSIRGVAVDGLNQLTITAGSDGLIKFWKFKAKDLVHSTDLSSS 523

Query:   296 LVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM 355
                I+ HR +G+L    DD  I + D+   ++VRKF GH  RI D  FS DG+WL++S M
Sbjct:   524 PSGILLHRDSGILGIAFDDFSISVLDIETWKIVRKFSGHHGRINDMTFSPDGRWLITSSM 583

Query:   356 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSN 415
             D +++ WD+     ID   +D +  +L++SP  D LA+AHVD  G+YLW NR ++S    
Sbjct:   584 DCTIKTWDLPSGCLIDCFLLDSAAVSLTMSPTGDFLASAHVDDLGIYLWSNRSIYS---- 639

Query:   416 IDSYASGKEIVSVKMPSVSSVEG-C--QDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDL 472
                  S + + +   PSV ++ G C  QD + ++ +    + +  DS   P  +Q    L
Sbjct:   640 ---LVSLRPLPADYEPSVITLPGTCPLQDVDVAEGEDKCDEMIEYDS---P--EQLGEQL 691

Query:   473 VTLSLLPKSQWQSLINLDIIKARNXXXXXXXXXXXAPFFLPSVPSLSGEILFKPSESTKE 532
             VTLSLLP+S+W++L++LD+IK +N           APFF+P+VP L       P +    
Sbjct:   692 VTLSLLPESRWKNLLSLDVIKKKNKPREPPKVPTSAPFFIPTVPGLIPRYA-APEQDNDT 750

Query:   533 DTESLKVGNKTKPDIPVSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRML 587
              ++ + +G   +     S F   L        ++A  + +K L PS +++ELR L
Sbjct:   751 QSKVVNIGVLAQK----SDFYVHLEEALSTNEYTAPLNLLKDLGPSNIEIELRSL 801

GO:0003824 "catalytic activity" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

POMBASE|SPCC1672.07 SPCC1672.07 "U3 snoRNP-associated protein Utp21 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 951 (339.8 bits), Expect = 1.2e-95, P = 1.2e-95
 Identities = 212/587 (36%), Positives = 327/587 (55%)

Query:     3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLM 62
             G V + +F +DG P+LAS    G +S W+L KRR+Q+V   AH  ++  + F   +P+L+
Sbjct:   246 GQVLSCSFRTDGTPILASSNPIGDLSFWDLSKRRIQNVTYNAHFGSLPKIQFLNGQPILV 305

Query:    63 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHIL-SAGQDRAFRLFSV 121
             +A  DNS+K WIFD+ DG PR+LR R+GH  PP  ++FY    H L SA  DR+ R  S+
Sbjct:   306 TAGPDNSLKEWIFDSMDGAPRILRSRNGHYEPPSFVKFYGKSVHFLISAATDRSLRAVSL 365

Query:   122 IQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFDCAEIRERDWCNVVTCHMDTAQAY 181
              QD QS ELSQ  V  +A+             + A   +  RE+ W NV+T H + + A 
Sbjct:   366 YQDSQSTELSQGSVISKAKKLNVRPEELKLPEITALSSSNTREKYWDNVLTAHKNDSSAR 425

Query:   182 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYL 241
              W  ++  LG+H+L P  +  T+V++  +S CGNF ++G++ G ++ +N+QSGI R S+ 
Sbjct:   426 TWNWKSKTLGQHVL-PTSDG-TSVRSVCVSCCGNFGLIGSSKGVVDVYNMQSGIKRKSF- 482

Query:   242 DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVY 301
               S  S       V  V  D+ N ++++A   G +K WDF   +L    +VG S+   +Y
Sbjct:   483 GQSSLSGKP----VTAVMLDNVNRILVTASLDGILKFWDFNKGNLIDSLDVGSSITHAIY 538

Query:   302 HRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRI 361
                + L+A   DD  IR+ DV   ++VR+  GH++R+T F FS+ G+WL+++ +DG++R 
Sbjct:   539 QHSSDLVAVACDDFGIRIVDVQTRKIVRELWGHSNRLTSFDFSDTGRWLVTASLDGTIRT 598

Query:   362 WDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYAS 421
             WD+     ID+I      T+L+ +P  D LAT HVDQ G+ LW N  MF    ++ + A 
Sbjct:   599 WDLPTGHLIDSISTPSVCTSLTFAPTGDYLATTHVDQVGISLWTNLSMFK---HVSTKAL 655

Query:   422 G-KEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPK 480
                ++V V  PSVS  +G     ++  +V  ++   ++     T  Q  P+L TLS LP+
Sbjct:   656 RLDDVVEVSAPSVSGEKGISVVEAAL-NVE-SNAEDEEDISYRTMDQLDPNLQTLSKLPR 713

Query:   481 SQWQSLINLDIIKARNXXXXXXXXXXXAPFFLPSVPSLSGEILFKPSESTKEDTESLKVG 540
             +QWQ+LINL+ IKARN           APFFLPS+   S   + K   +T+    +    
Sbjct:   714 TQWQTLINLEAIKARNAPKEVPKVPEKAPFFLPSLKDQSEATVPKQPIATEISKPTAVAS 773

Query:   541 NKTKPDIPVSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRML 587
              K    +  ++F  LLH      +  AF +Y+KSL P+ +D+E+R L
Sbjct:   774 IK----VSGTEFSTLLHG----NDDDAFFEYLKSLGPAKIDLEIRSL 812

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=NAS

GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=ISO

GO:0005819 "spindle" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006364 "rRNA processing" evidence=ISO

GO:0032040 "small-subunit processome" evidence=IEA

GO:0032153 "cell division site" evidence=IDA

GO:0044732 "mitotic spindle pole body" evidence=IDA

UNIPROTKB|G3X6I6 WDR36 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 930 (332.4 bits), Expect = 1.4e-95, Sum P(2) = 1.4e-95
 Identities = 213/594 (35%), Positives = 323/594 (54%)

Query:     3 GAVTALAF-SSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL 61
             G +T+++F ++DG P++A+G+  G I +W+LE ++L + +R AH  AI  L F   EP+L
Sbjct:   286 GPITSISFRTADGHPVMAAGSPCGHIGLWDLEDKKLINQMRNAHSTAIAGLTFLHREPLL 345

Query:    62 MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFS 120
             ++  ADN++++WIFD   G+ RLLRFR GHSAP   IR+Y  NG+HILSA QD   + FS
Sbjct:   346 VTNGADNALRIWIFDGPAGEGRLLRFRMGHSAPLTRIRYYGQNGQHILSASQDGTLQSFS 405

Query:   121 VIQDQQSRELSQRHVAKRA--RXXXXXXXXXXXXPVIAFDCAEIRERDWCNVVTCHMDTA 178
              + ++ ++ L    + K+   R            PV  F   E RE DW  +V CH    
Sbjct:   406 TVHEKFNKSLGHGLINKKRVKRKGLQNTMSVRLPPVTEFAAEEARESDWDGIVACHQGKL 465

Query:   179 QAYVWRLQNFVLGEHILRPC--PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS 236
                 W  Q   +G H LRP     + T   A  I++CGNFAV+G + G ++ +N+QSGI 
Sbjct:   466 SCSTWNYQRSTIGAHFLRPAGLKTDSTTATAVDITSCGNFAVIGLSSGAVDVYNMQSGIH 525

Query:   237 RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSL 296
             RGS+       + AH G V GVA D  N L I+AG  G +K W+FK + L     +  S 
Sbjct:   526 RGSF-----GRDQAHKGSVRGVAVDGLNQLTITAGSEGVLKFWNFKNKVLIHSVSLDSSP 580

Query:   297 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 356
               ++ HR +G+L    DD  I + D+   ++VR+F GH  +I D  FS DG+WL+S+ MD
Sbjct:   581 NLMLLHRDSGILGLALDDFSISVLDIETRKIVREFSGHQGQINDMTFSPDGRWLISASMD 640

Query:   357 GSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNI 416
              S+R WD+     ID+  +D +   +++SP  D LAT+HVD  GVYLW N  ++S     
Sbjct:   641 CSIRTWDLPSGCLIDSFLLDSAPLNVTMSPTGDFLATSHVDHLGVYLWSNISLYS----- 695

Query:   417 DSYASGKEIVSVKMPSVSSVEG-CQ--DENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLV 473
                 S + + +  +PSV  + G CQ  D   S+  V  ++ + +  +  P  +Q    LV
Sbjct:   696 --VVSLRPLPTDYVPSVVMLPGTCQTQDVELSEETVEPSEEMIE--YDSP--EQLNEQLV 749

Query:   474 TLSLLPKSQWQSLINLDIIKARNXXXXXXXXXXXAPFFLPSVPSLSGEILFKPSESTKED 533
             TLSLLP+S+W++L+NLD+IK +N           APFF+P++P L          +  + 
Sbjct:   750 TLSLLPESRWKNLLNLDVIKKKNKPKEPPKVPKSAPFFIPTIPGLVPRYAAPEQNNDPQQ 809

Query:   534 TESLKVGNKTKPDIPVSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRML 587
             ++ + +G   +     S F   L        + A  + +K L PS ++ ELR L
Sbjct:   810 SKVVNLGILAQK----SDFCLKLEEGLVNNKYEAAVNLLKELGPSGIETELRSL 859

GO:0032040 "small-subunit processome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

UNIPROTKB|Q8NI36 WDR36 "WD repeat-containing protein 36" [Homo sapiens (taxid:9606)]

 Score = 904 (323.3 bits), Expect = 7.9e-93, Sum P(2) = 7.9e-93
 Identities = 203/593 (34%), Positives = 317/593 (53%)

Query:     3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLM 62
             G +T+++F +DG P++A+G+  G I +W+LE ++L + +R AH  AI  L F   EP+L+
Sbjct:   290 GPITSISFRTDGHPVMAAGSPCGHIGLWDLEDKKLINQMRNAHSTAIAGLTFLHREPLLV 349

Query:    63 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSV 121
             +  ADN++++WIFD   G+ RLLRFR GHSAP   IR+Y  NG+ ILSA QD   + FS 
Sbjct:   350 TNGADNALRIWIFDGPTGEGRLLRFRMGHSAPLTNIRYYGQNGQQILSASQDGTLQSFST 409

Query:   122 IQDQQSRELSQRHVAKRA--RXXXXXXXXXXXXPVIAFDCAEIRERDWCNVVTCHMDTAQ 179
             + ++ ++ L    + K+   R            P+  F   E RE DW  ++ CH     
Sbjct:   410 VHEKFNKSLGHGLINKKRVKRKGLQNTMSVRLPPITKFAAEEARESDWDGIIACHQGKLS 469

Query:   180 AYVWRLQNFVLGEHILRP--CPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR 237
                W  Q   +G + L+P    ++     A  I++CGNFAV+G + G ++ +N+QSGI R
Sbjct:   470 CSTWNYQKSTIGAYFLKPKELKKDDITATAVDITSCGNFAVIGLSSGTVDVYNMQSGIHR 529

Query:   238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLV 297
             GS+       + AH G V GVA D  N L ++ G  G +K W+FK + L     +  S  
Sbjct:   530 GSF-----GKDQAHKGSVRGVAVDGLNQLTVTTGSEGLLKFWNFKNKILIHSVSLSSSPN 584

Query:   298 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG 357
              ++ HR +G+L    DD  I + D+   ++VR+F GH  +I D  FS DG+WL+S+ MD 
Sbjct:   585 IMLLHRDSGILGLALDDFSISVLDIETRKIVREFSGHQGQINDMAFSPDGRWLISAAMDC 644

Query:   358 SLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNID 417
             S+R WD+     ID   +D +   +S+SP  D LAT+HVD  G+YLW N  ++S      
Sbjct:   645 SIRTWDLPSGCLIDCFLLDSAPLNVSMSPTGDFLATSHVDHLGIYLWSNISLYS------ 698

Query:   418 SYASGKEIVSVKMPSVSSVEG-CQ--DENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVT 474
                S + + +  +PS+  + G CQ  D   S+  V  +D + +  +  P  +Q    LVT
Sbjct:   699 -VVSLRPLPADYVPSIVMLPGTCQTQDVEVSEETVEPSDELIE--YDSP--EQLNEQLVT 753

Query:   475 LSLLPKSQWQSLINLDIIKARNXXXXXXXXXXXAPFFLPSVPSLSGEILFKPSESTKEDT 534
             LSLLP+S+W++L+NLD+IK +N           APFF+P++P L          +  + +
Sbjct:   754 LSLLPESRWKNLLNLDVIKKKNKPKEPPKVPKSAPFFIPTIPGLVPRYAAPEQNNDPQQS 813

Query:   535 ESLKVGNKTKPDIPVSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRML 587
             + + +G   +     S F   L        +    + +K   PS ++ ELR L
Sbjct:   814 KVVNLGVLAQK----SDFCLKLEEGLVNNKYDTALNLLKESGPSGIETELRSL 862

GO:0006364 "rRNA processing" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0050896 "response to stimulus" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1PNT8 WDR36 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 923 (330.0 bits), Expect = 1.1e-92, P = 1.1e-92
 Identities = 208/593 (35%), Positives = 324/593 (54%)

Query:     3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLM 62
             G +T+++F +DG P++A+G+  G I +W+LE ++L + +R AH  AI  L F   EP+L+
Sbjct:   230 GPITSISFRTDGHPIMAAGSPCGHIGLWDLEDKKLINQMRNAHSTAIAGLTFLHREPLLV 289

Query:    63 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSV 121
             +  ADN++++WIFD   G+ RLLRFR GHSAP   IR+Y  NG+ ILSA QD   + FS 
Sbjct:   290 TNGADNALRIWIFDGPTGEGRLLRFRMGHSAPLTKIRYYGQNGQQILSASQDGTLQSFST 349

Query:   122 IQDQQSRELSQRHVAKRA--RXXXXXXXXXXXXPVIAFDCAEIRERDWCNVVTCHMDTAQ 179
             I ++ ++ L    + K+   R            P+  F   E RE DW +++ CH     
Sbjct:   350 IHEKFNKSLGHGLINKKKVKRKGLQNAMSVRLPPITKFAAEEARESDWDSIIACHQGKLS 409

Query:   180 AYVWRLQNFVLGEHILRP--CPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR 237
                W  Q   +G + L+P    ++     A  I++CGNFAV+G + G ++ +N+QSGI R
Sbjct:   410 CSTWNYQRSTIGAYFLKPKELKKDDITATAVDITSCGNFAVIGLSSGTVDVYNMQSGIHR 469

Query:   238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLV 297
             GS+ +     + AH G V GVA D  N L+I+AG  G +K W+FK + L     +  S  
Sbjct:   470 GSFGE-----DQAHKGSVRGVAVDGLNQLIITAGSEGLLKFWNFKNKILIHSMSLSSSPN 524

Query:   298 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG 357
              ++ HR +G+L    DD  I + D+   ++VR+F GH  +I D  FS DG+WL+S+ MD 
Sbjct:   525 MMLLHRDSGILGLALDDFSICVLDIETRKIVREFSGHQGQINDLAFSPDGRWLISASMDC 584

Query:   358 SLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNID 417
             S+R WD+     ID+  VD +   +++SP  D LAT+HVD  G+YLW N  ++S      
Sbjct:   585 SVRTWDLPSGCLIDSFLVDSAPLNVTMSPTGDFLATSHVDHLGIYLWSNISLYS------ 638

Query:   418 SYASGKEIVSVKMPSVSSVEG-CQDENS--SQPDVHRTDRVPKDSFGLPTFKQQIPDLVT 474
                S + + +  +P V  + G CQ+E+   S+  +  +D + +  +  P  +Q    LVT
Sbjct:   639 -VVSLRPLPTDYVPLVVMLPGTCQNEDVEFSEETIEPSDEMIE--YDSP--EQLNEQLVT 693

Query:   475 LSLLPKSQWQSLINLDIIKARNXXXXXXXXXXXAPFFLPSVPSLSGEILFKPSESTKEDT 534
             LSLLP+S+W++L+NLD+IK +N           APFF+P+VP L          +    +
Sbjct:   694 LSLLPESRWKNLLNLDVIKKKNKPKEPPKVPKSAPFFIPTVPGLVPRYAVPEQNNDPHQS 753

Query:   535 ESLKVGNKTKPDIPVSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRML 587
             + + +G   +     S F   L        + A  + +K L PS ++ ELR L
Sbjct:   754 KVVNLGVLAQK----SDFCLKLEEGLVNNKYEAALNLLKELGPSGIETELRSL 802

GO:0032040 "small-subunit processome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

UNIPROTKB|F1RLI4 WDR36 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 918 (328.2 bits), Expect = 3.9e-92, P = 3.9e-92
 Identities = 214/619 (34%), Positives = 330/619 (53%)

Query:     3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLM 62
             G +T+++F +DG P++A+G+  G I +W+LE ++L + +R AH  AI  L F   EP+L+
Sbjct:   290 GPITSISFRTDGHPVMAAGSPCGHIGLWDLEDKKLINQMRNAHSTAIAGLTFLHREPLLV 349

Query:    63 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSV 121
             +  ADN++++WIFD   G+ RLLRFR GHSAP   IR+Y  NG+ ILSA QD   + FS 
Sbjct:   350 TNGADNALRIWIFDGPTGEGRLLRFRMGHSAPLTKIRYYGQNGQQILSASQDGTLQSFST 409

Query:   122 IQDQQSRELSQRHVAKRA--RXXXXXXXXXXXXPVIAFDCAEIRERDWCNVVTCHMDTAQ 179
             I ++ ++ L    + K+   R            P+  F   E RE DW  ++ CH     
Sbjct:   410 IHEKFNKSLGHGLINKKRVKRKGLQNAMTVRLPPITEFAAEEARESDWDGIIACHQGKLS 469

Query:   180 AYVWRLQNFVLGEHILRP--CPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR 237
                W  Q   +G + L+P    ++     A  I++CGNFAV+G + G I+ +N+QSGI R
Sbjct:   470 CSTWNYQRSTIGAYFLKPKELKKDDITATAVDITSCGNFAVIGLSSGTIDVYNMQSGIHR 529

Query:   238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLV 297
             GS+       + AH G + GVA D  N L ISAG  G +K W+FK + L     +  S  
Sbjct:   530 GSF-----GKDQAHKGSIRGVAVDGLNQLTISAGSEGLLKFWNFKNKILIHSVSLDSSPN 584

Query:   298 KIVYHR-VNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 356
              ++ HR  +G+L    DD  I + D+   ++VR+F GH  +I D  FS DG+WL+S+ MD
Sbjct:   585 MMLLHRDSSGILGLALDDFSISVLDIETRKIVREFSGHQGQINDMAFSPDGRWLISASMD 644

Query:   357 GSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNI 416
              S+R WD+     ID+  +D +   +++SP  D LAT+HVD  G+YLW N  ++S     
Sbjct:   645 CSIRTWDLPSGCLIDSFLLDSAPLNVTMSPTGDFLATSHVDHLGIYLWSNISLYS----- 699

Query:   417 DSYASGKEIVSVKMPSVSSVEG-CQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPD-LVT 474
                 S + + +  +PSV  + G CQ ++    +   T+  P D        +Q+ + LVT
Sbjct:   700 --VVSLRPLPTDYVPSVVMLPGTCQTQDIELSE-ETTE--PSDEMIAYDSPEQLNEQLVT 754

Query:   475 LSLLPKSQWQSLINLDIIKARNXXXXXXXXXXXAPFFLPSVPSLSGEILFKPSESTKEDT 534
             LSLLP+S+W++L+NLD+IK +N           APFF+P+VP L          +  + +
Sbjct:   755 LSLLPESRWKNLLNLDVIKKKNKPKEPPKVPKSAPFFIPTVPGLVPRYATPEQNNDPQQS 814

Query:   535 ESLKVGNKTKPDIPVSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDD 594
             + + +G   +     S F   L        + A    +K L PS ++ ELR L     D 
Sbjct:   815 KVVNLGILAQK----SDFCLKLEEGLVNNKYEAALSLLKELGPSGIETELRSLS---PDC 867

Query:   595 HQELDKRPEYLS-IELLLD 612
                ++    +L  IE++LD
Sbjct:   868 GGSIEVMKSFLKMIEMMLD 886

GO:0032040 "small-subunit processome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

RGD|1586463 Wdr36 "WD repeat domain 36" [Rattus norvegicus (taxid:10116)]

 Score = 893 (319.4 bits), Expect = 8.9e-92, Sum P(2) = 8.9e-92
 Identities = 210/619 (33%), Positives = 328/619 (52%)

Query:     3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLM 62
             G +T+++F +DG P++A+G+  G I +W+LE ++L + +R AH  AI  L F   EP+L+
Sbjct:   236 GPITSISFRTDGHPIMAAGSPCGHIGLWDLEDKKLINQMRNAHSTAISGLTFLHREPLLV 295

Query:    63 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSV 121
             +  ADN++++WIFD   G+ RLLR R GHSA    IR+Y  NG+ ILSA QD   + FS 
Sbjct:   296 TNGADNALRIWIFDGPTGEGRLLRLRMGHSASLTKIRYYGQNGQQILSASQDGTLQSFST 355

Query:   122 IQDQQSRELSQRHVAKRA--RXXXXXXXXXXXXPVIAFDCAEIRERDWCNVVTCHMDTAQ 179
             + ++ ++ L    V K+   R            P+  F   E R+ DW  V+ CH     
Sbjct:   356 VHEKFNKSLGHGLVNKKIVKRKGLQNTMSVRLPPITQFAAEEARQSDWDGVIACHQGKLS 415

Query:   180 AYVWRLQNFVLGEHILRP--CPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR 237
                W  Q   +G + L+P     N     A  I++CGNFA++G + G ++ +N+QSGI R
Sbjct:   416 CSTWNYQRSTIGAYFLKPKNVKANSATATAVDITSCGNFAIIGLSSGAVDVYNMQSGIHR 475

Query:   238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLV 297
             GS+ D  E+   AH G V GVA D  N L I+AG    +K W+FK + L     +     
Sbjct:   476 GSFGD--EK---AHAGSVRGVAVDGLNQLAITAGSERLLKFWNFKSKVLVHSLSLDSPPN 530

Query:   298 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG 357
              ++ HR +G+L    DD  I + D+   ++VR+F GH  +I D  FS DG+WL+S+ MD 
Sbjct:   531 VMLLHRDSGILGLALDDFSITVLDIETRKIVREFSGHQGQINDMTFSPDGRWLISAAMDC 590

Query:   358 SLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNID 417
             S+R WD+     ID   +D +   +++SP  D LAT+HVD  G+YLW N  ++S      
Sbjct:   591 SVRTWDLPSGCLIDCFLLDSAPLNVTMSPTGDFLATSHVDHLGIYLWSNISLYS------ 644

Query:   418 SYASGKEIVSVKMPSVSSVEG-CQDEN--SSQPDVHRTDRVPKDSFGLPTFKQQIPDLVT 474
                S + +    +PSV  + G CQ +   + +  +  +D + +  +  P  +Q    LVT
Sbjct:   645 -VVSLRPLPPDYVPSVLMLPGTCQTQGLEALEEQIEPSDEMIE--YESP--EQLNEQLVT 699

Query:   475 LSLLPKSQWQSLINLDIIKARNXXXXXXXXXXXAPFFLPSVPSLSGEILFKPSESTKEDT 534
             LSLLP+S+W++L+NLD+IK +N           APFF+P+VP L          S  + +
Sbjct:   700 LSLLPESRWKNLLNLDVIKKKNKPKEPPKVPQSAPFFIPTVPGLVPRFAVPEPTSDPQQS 759

Query:   535 ESLKVGNKTKPDIPVSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDD 594
             + + +G   +     S F   L    +   +    + +K L PS ++ ELR L     +D
Sbjct:   760 KVVNLGILAQK----SNFYLKLEEGLQNNQYEGALNLLKELGPSGIETELRNLS---PED 812

Query:   595 HQELDKRPEYLS-IELLLD 612
                ++    +LS I ++LD
Sbjct:   813 GGSIEAMRSFLSMIGVMLD 831

GO:0001895 "retina homeostasis" evidence=ISO

GO:0006364 "rRNA processing" evidence=IEA

GO:0030516 "regulation of axon extension" evidence=ISO

GO:0032040 "small-subunit processome" evidence=IEA

FB|FBgn0038146 CG9799 [Drosophila melanogaster (taxid:7227)]

 Score = 892 (319.1 bits), Expect = 2.2e-89, P = 2.2e-89
 Identities = 222/698 (31%), Positives = 360/698 (51%)

Query:     3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLM 62
             G VT L+F +DG P+L S  S+G ++ WNLE+R+L   + +AH+ ++ +     +EPV+ 
Sbjct:   246 GQVTNLSFRTDGPPILVSACSNGYMAFWNLEERKLAGQL-QAHEESVTTAICLPSEPVVF 304

Query:    63 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY-ANGRHILSAGQDRAFRLFSV 121
             + S DNS++M++FD  DG  R LR R GH+ PP CIR++ ++G  ILS+G+D   R+FS 
Sbjct:   305 TTSPDNSMRMFVFDMPDGGARQLRIREGHTKPPFCIRYHGSSGVSILSSGEDSTMRVFST 364

Query:   122 IQDQQSRELSQRHVAKRA--RXXXXXXXXXXXXPVIAFDCAEIRERDWCNVVTCHMDTAQ 179
             I +  ++ + +     +A  +            P++ F     RE++W N+   H    Q
Sbjct:   365 ISESLNKSMGRATYNPKATKKKNRFEHDKFGMPPILEFTSDTAREKEWDNIAAIHAGVIQ 424

Query:   180 AYVWRLQNFVLGEHILRPCP---ENPTAVK---ACTI-SACGNFAVLGTAGGWIERFNLQ 232
             A  W      +GEH L P      N T  +    C + + CGNF ++G + G IERFN+Q
Sbjct:   425 ATTWSFGKNRMGEHRLVPKQFQNSNRTNFQNETTCIVLTHCGNFVIIGYSSGDIERFNIQ 484

Query:   233 SGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS---- 288
             SG+ R +Y       + AH   V G+A D+ N  +IS    G +K W FKG+  K     
Sbjct:   485 SGLHRATY------GSPAHKMAVRGLASDNLNQTVISGCSEGLLKFWSFKGKVDKPLATL 538

Query:   289 RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK 348
             R   G +L+++  HR + +LA   +   I + D+    +VRKF GHT ++ D  FS D +
Sbjct:   539 RLADGIALIRL--HRESSMLAIGLETFKIFVVDMHTRVIVRKFVGHTAKLNDLTFSPDSR 596

Query:   349 WLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRC 408
             WL+++ MD ++++WD+  +  +D   V+    +LS+SPN D LATAHV   G+YLW N+ 
Sbjct:   597 WLITAAMDSTIKVWDIPSSYMVDHFRVEAPCVSLSMSPNGDFLATAHVGLLGIYLWANKT 656

Query:   409 MFSGDS--NIDSYASGKEI-VSVKMPSVSSVE-GCQDENSSQPDVHRTDRVPKDSFGLPT 464
             +F+  S  +ID       + +   +     +E G ++    + D  +   +    +  PT
Sbjct:   657 LFNQISLRSIDPLELAPYVGLPTNVCDAMELEDGMKELEIDEEDESKLGELVDTKYETPT 716

Query:   465 FKQQIPDLVTLSLLPKSQWQSLINLDIIKARNXXXXXXXXXXXAPFFLPSVPSLSGEILF 524
               Q   +L+TLS L  S+WQ+L++L++IK RN           APFFLP+V  L  E+ F
Sbjct:   717 --QLSEELITLSGLAASRWQNLLDLELIKQRNKPKAPPKAPKQAPFFLPTVSGL--ELRF 772

Query:   525 KPSESTKEDTESLKVGNKTKPDIPVSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMEL 584
                   KE+ ES ++  K      ++ F QLL   A+  +F++   ++  L PS +D E+
Sbjct:   773 DVENGQKEEDES-RI-RKASTLNNLTAFGQLLEETADSLDFASAVAHLTQLGPSMVDFEI 830

Query:   585 RMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETVRC 644
             + L       H E       L++   L  +        NFE  Q+ + +FL+ HG  +  
Sbjct:   831 KSL-------HPEAGGT--LLAMLQFLKLVKFMFGTNLNFELAQSYLSVFLRSHGLGLTE 881

Query:   645 HTKLQDKARKLLEVQSAVWQKIDKMFQSARCVVSFLSN 682
                L  + R + +VQ   WQ++++       VV+ L N
Sbjct:   882 FPDLVKELRTVSQVQQEAWQRVEEKLIYGTGVVAALRN 919

GO:0006364 "rRNA processing" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

ZFIN|ZDB-GENE-030131-464 wdr36 "WD repeat domain 36" [Danio rerio (taxid:7955)]

 Score = 891 (318.7 bits), Expect = 2.8e-89, P = 2.8e-89
 Identities = 205/592 (34%), Positives = 315/592 (53%)

Query:     3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLM 62
             G +TAL+F +DG P++ASG+  G I +W+LE+++L S +R+AH  AI  L F  NEP+L+
Sbjct:   242 GPITALSFRTDGHPIMASGSPIGHIGLWDLEEKKLVSQMRDAHTTAIAGLTFLQNEPLLI 301

Query:    63 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY-ANGRHILSAGQDRAFRLFSV 121
             +  ADN+I++WIFD   GD RLLR R GHSAPP  IR Y  +G +ILSAGQD   + FS 
Sbjct:   302 TNGADNAIRVWIFDVAGGDGRLLRQRMGHSAPPTKIRHYDQSGLNILSAGQDGTLQSFST 361

Query:   122 IQDQQSRELSQRHVAK-RARXXXXXXXXXXXXPVIAFDCAEIRERDWCNVVTCHMDTAQA 180
             + ++ ++ L    + K +A+             +  F     R+ DW  ++ CH      
Sbjct:   362 VHERFNKSLGHGTLNKAKAKKKGVKYDTAKLPSITTFASETARQSDWDGIIACHRGFLMT 421

Query:   181 YVWRLQNFVLGEHILRPCPENPTA-----VKACTISACGNFAVLGTAGGWIERFNLQSGI 235
               W  Q   +G H L P   N          A  IS+CGNFAV+  + G I+ +N+QSG+
Sbjct:   422 TSWNYQKGSMGAHKLEPERFNRNRSLNVHATAVDISSCGNFAVIALSSGHIDVYNMQSGL 481

Query:   236 SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCS 295
              RG Y +     + AH G V GVA D+ N L  S G    +K+W FK ++      +  +
Sbjct:   482 HRGHYGE-----DKAHEGPVRGVAVDALNQLTFSVGADHLLKIWKFKSKEHLHTHRLPAA 536

Query:   296 LVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM 355
                 + HR +G+LA   D   I + DV   R+VRKF GH  +I D  FS DG+WL+++ M
Sbjct:   537 PASSLLHRDSGMLAIALDVFAIHILDVETRRIVRKFSGHRGQINDMTFSPDGRWLITASM 596

Query:   356 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSN 415
             D ++R WD+     +D   V+ +  ++SLSP  + LA++HVD  GVYLW N  + S  S 
Sbjct:   597 DCTIRTWDLPSGSLVDCFLVEAAAVSVSLSPTGNFLASSHVDGLGVYLWSNNTLCSLVS- 655

Query:   416 IDSYASGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTL 475
             +    +  E   + +P +     C  +++ + +V  +D      +  P   Q    LVTL
Sbjct:   656 LRPLPADYEPTVIMLPGI-----CPSKDTEEEEVLDSDSSEMAEYISPA--QLDEHLVTL 708

Query:   476 SLLPKSQWQSLINLDIIKARNXXXXXXXXXXXAPFFLPSVPSLSGEILFKPSESTKEDTE 535
             SLLP S+W++L++LDIIK +N           APFF+P++P L  +    P+  ++  ++
Sbjct:   709 SLLPDSRWKNLLHLDIIKKKNKPKEPPKVPKAAPFFIPTIPGLVPQFSL-PNTPSEAQSK 767

Query:   536 SLKVGNKTKPDIPVSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRML 587
              + +G   +     S F   L +  E  ++      ++ L PS ++ ELR L
Sbjct:   768 VVNLGVLAQK----SNFYIELENAIESNSYEEPVKLLRELGPSAIETELRAL 815

GO:0032040 "small-subunit processome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA;IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_VI0607	hypothetical protein (910 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pm.C_280108	hypothetical protein (960 aa)				•	•		•	•	0.770
	eugene3.00640202	hypothetical protein (1181 aa)				•	•		•		0.745
	eugene3.00160311	hypothetical protein (691 aa)				•	•		•		0.705
	estExt_Genewise1_v1.C_LG_VII2715	hypothetical protein (380 aa)				•	•		•		0.673
	gw1.X.2964.1	hypothetical protein (516 aa)				•	•		•		0.668
	gw1.I.4832.1	hypothetical protein (422 aa)				•					0.617
	fgenesh4_pm.C_LG_V000540	hypothetical protein (491 aa)				•	•		•		0.575
	gw1.86.17.1	hypothetical protein (573 aa)				•					0.548
	gw1.I.7000.1	hypothetical protein (1109 aa)				•					0.539
	estExt_fgenesh4_pg.C_LG_XV0629	hypothetical protein (314 aa)				•					0.539

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	685
pfam04192	233	pfam04192, Utp21, Utp21 specific WD40 associated p	1e-55
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-30
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-23
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-22
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-22
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-19
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-16
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-15
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-14
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-12
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-11
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-09
smart00320	40	smart00320, WD40, WD40 repeats	3e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.002
smart00320	40	smart00320, WD40, WD40 repeats	0.002
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.003
PLN02638	1079	PLN02638, PLN02638, cellulose synthase A (UDP-form	0.004

>gnl|CDD|217955 pfam04192, Utp21, Utp21 specific WD40 associated putative domain

 Score =  189 bits (482), Expect = 1e-55
 Identities = 82/220 (37%), Positives = 122/220 (55%), Gaps = 15/220 (6%)

Query: 468 QI-PDLVTLSLLPKSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEILFKP 526
           Q+  +LVTLSLLP+S+WQ+L++LD+IK RNKP E PKKPEKAPFFLP+V  L        
Sbjct: 24  QLSEELVTLSLLPRSRWQTLLHLDVIKQRNKPKEAPKKPEKAPFFLPTVAGLDDRFGSAA 83

Query: 527 SESTKEDTESLKV-GNKTKPDIPV---SQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDM 582
               K DT+S      K K    +   S F +LL   AE  +++ F +Y+KSLSPS +D+
Sbjct: 84  ESEDKGDTDSKASRLAKLKRSGSLGFESPFTKLLREGAESGDYTEFLEYLKSLSPSAIDL 143

Query: 583 ELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETV 642
           E+R L        +EL            +  L   +  + +FE +QA + +FLK+HG+ +
Sbjct: 144 EIRSL-NPSFGPLEEL---------LSFIKALTQGLKSKRDFELVQAYMSVFLKLHGDVI 193

Query: 643 RCHTKLQDKARKLLEVQSAVWQKIDKMFQSARCVVSFLSN 682
             +++L +      E Q   W+++D +      VVSFL +
Sbjct: 194 VQNSELVEALEAWSEAQEKEWERLDDLVGYCSGVVSFLRS 233

Utp21 is a subunit of U3 snoRNP, which is essential for synthesis of 18S rRNA. Length = 233

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  121 bits (305), Expect = 2e-30
 Identities = 76/320 (23%), Positives = 128/320 (40%), Gaps = 39/320 (12%)

Query: 45  HDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG 104
           H   +  + F  +  +L + S D +IK+W  D   G+  LLR   GH+ P   +   A+G
Sbjct: 8   HTGGVTCVAFSPDGKLLATGSGDGTIKVW--DLETGE--LLRTLKGHTGPVRDVAASADG 63

Query: 105 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE 164
            ++ S   D+  RL+ +   +  R L+  H                   V     A   +
Sbjct: 64  TYLASGSSDKTIRLWDLETGECVRTLTG-H----------------TSYV--SSVAFSPD 104

Query: 165 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG 224
                + +   D     VW ++        L     +   V +   S  G F    +  G
Sbjct: 105 GRI--LSSSSRDK-TIKVWDVETGKC----LTTLRGHTDWVNSVAFSPDGTFVASSSQDG 157

Query: 225 WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR 284
            I+ ++L++G    +           H GEV  VA       ++S+   G IK+WD    
Sbjct: 158 TIKLWDLRTGKCVATL--------TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG 209

Query: 285 D-LKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCF 343
             L +       +  + +     LLA+ ++D  IR++D+     V+   GHT+ +T   +
Sbjct: 210 KCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAW 269

Query: 344 SEDGKWLLSSGMDGSLRIWD 363
           S DGK L S   DG++RIWD
Sbjct: 270 SPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  100 bits (252), Expect = 2e-23
 Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 5/157 (3%)

Query: 251 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV-GCSLVKIVYHRVNGLLA 309
           H G V  VA      L+ +    G IKVWD +  +L    +     +  +        LA
Sbjct: 8   HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLA 67

Query: 310 TVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ 369
           + + D  IRL+D+     VR   GHT  ++   FS DG+ L SS  D ++++WDV   + 
Sbjct: 68  SGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC 127

Query: 370 IDAI--HVDVSITALSLSPNMDVLATAHVDQNGVYLW 404
           +  +  H D  + +++ SP+   +A++  D   + LW
Sbjct: 128 LTTLRGHTD-WVNSVAFSPDGTFVASSSQDGT-IKLW 162

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 98.6 bits (246), Expect = 1e-22
 Identities = 50/232 (21%), Positives = 95/232 (40%), Gaps = 23/232 (9%)

Query: 179 QAYVWRLQN----FVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG 234
              VW L+       L  H           V+    SA G +   G++   I  ++L++G
Sbjct: 32  TIKVWDLETGELLRTLKGHTG--------PVRDVAASADGTYLASGSSDKTIRLWDLETG 83

Query: 235 ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE-VG 293
               +           H   V  VA      ++ S+     IKVWD +     +      
Sbjct: 84  ECVRTLT--------GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHT 135

Query: 294 CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS 353
             +  + +      +A+ + D  I+L+D+   + V    GHT  +    FS DG+ LLSS
Sbjct: 136 DWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSS 195

Query: 354 GMDGSLRIWDVILARQIDAIHV-DVSITALSLSPNMDVLATAHVDQNGVYLW 404
             DG++++WD+   + +  +   +  + +++ SP+  +LA+   D   + +W
Sbjct: 196 SSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT-IRVW 246

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 99.8 bits (247), Expect = 4e-22
 Identities = 82/368 (22%), Positives = 150/368 (40%), Gaps = 40/368 (10%)

Query: 2   RGAVTALAFSSDGQPLLASGASS--GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP 59
             +V+ LA SS     +   +SS  G + +W+L          E H  ++ SL F  +  
Sbjct: 109 DSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGK 168

Query: 60  VLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQDRAFR 117
           +L S S  D +IK+W   T     + L   +GH+ P   + F  +G   I S   D   R
Sbjct: 169 LLASGSSLDGTIKLWDLRTG----KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR 224

Query: 118 LFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDT 177
           L+ +   +  R     H                   V +F        D   + +   D 
Sbjct: 225 LWDLSTGKLLRSTLSGHSDS---------------VVSSFS------PDGSLLASGSSDG 263

Query: 178 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR 237
               +W L++      +LR    + ++V +   S  G     G++ G +  ++L++G   
Sbjct: 264 T-IRLWDLRS---SSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLL 319

Query: 238 GSYLDMSERSNYAHNGEVVGVAC-DSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSL 296
                 S  +   H G V  ++     + L+      G I++WD +        E   ++
Sbjct: 320 ------SSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNV 373

Query: 297 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 356
           + + +     ++++ + D  +RL+D+    ++R  +GHT R+T   FS DGK L S   D
Sbjct: 374 LSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSD 433

Query: 357 GSLRIWDV 364
            ++R+WD+
Sbjct: 434 NTIRLWDL 441

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 87.0 bits (216), Expect = 9e-19
 Identities = 61/332 (18%), Positives = 116/332 (34%), Gaps = 67/332 (20%)

Query: 90  GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEEL 149
           GH+    C+ F  +G+ + +   D   +++ +   +  R L              K    
Sbjct: 7   GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTL--------------KGHTG 52

Query: 150 KLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN----FVLGEHILRPCPENPTAV 205
            ++ V A             + +   D     +W L+       L  H         + V
Sbjct: 53  PVRDVAASADGT-------YLASGSSDK-TIRLWDLETGECVRTLTGH--------TSYV 96

Query: 206 KACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT 265
            +   S  G      +    I+ +++++G    +           H   V  VA     T
Sbjct: 97  SSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG--------HTDWVNSVAFSPDGT 148

Query: 266 LMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVK-----------IVYHRVNGLLATVADD 314
            + S+   G IK+WD +              V            + +      L + + D
Sbjct: 149 FVASSSQDGTIKLWDLRT----------GKCVATLTGHTGEVNSVAFSPDGEKLLSSSSD 198

Query: 315 LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI- 373
             I+L+D+   + +    GH + +    FS DG  L S   DG++R+WD+     +  + 
Sbjct: 199 GTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS 258

Query: 374 -HVDVSITALSLSPNMDVLATAHVDQNGVYLW 404
            H   S+T+L+ SP+   LA+   D   + +W
Sbjct: 259 GH-TNSVTSLAWSPDGKRLASGSAD-GTIRIW 288

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 79.7 bits (197), Expect = 3e-16
 Identities = 62/280 (22%), Positives = 104/280 (37%), Gaps = 44/280 (15%)

Query: 3   GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLM 62
           G V  +A S+DG   LASG+S   I +W+LE       +   H + + S+ F  +  +L 
Sbjct: 52  GPVRDVAASADGT-YLASGSSDKTIRLWDLETGECVRTL-TGHTSYVSSVAFSPDGRILS 109

Query: 63  SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI 122
           S+S D +IK+W  D   G  + L    GH+     + F  +G  + S+ QD   +L+ + 
Sbjct: 110 SSSRDKTIKVW--DVETG--KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR 165

Query: 123 QDQQSRELSQRHVAKRARKLKMKEEELKLKPV--IAFDCAEIRERDWCNVVTCHMDTAQA 180
             +    L+  H                   V  +AF        D   +++   D    
Sbjct: 166 TGKCVATLTG-HT----------------GEVNSVAFS------PDGEKLLSSSSDG-TI 201

Query: 181 YVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 240
            +W L         L     +   V +   S  G     G+  G I  ++L++G    + 
Sbjct: 202 KLWDLSTGKC----LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL 257

Query: 241 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD 280
                     H   V  +A       + S    G I++WD
Sbjct: 258 --------SGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 80.1 bits (196), Expect = 1e-15
 Identities = 86/406 (21%), Positives = 163/406 (40%), Gaps = 45/406 (11%)

Query: 6   TALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS 65
                SS+   LL +  S  ++S+ +L    L+      H+++I S+ F  +  +L+S S
Sbjct: 30  LLSLGSSESGILLLALLSDSLVSLPDLSSLLLRG-----HEDSITSIAFSPDGELLLSGS 84

Query: 66  ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRF-YANGRHILSAGQDRAFRLFSVIQD 124
           +D +IK+W  D  +G+  +      H +    +     +G  IL A             D
Sbjct: 85  SDGTIKLW--DLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSL---------D 133

Query: 125 QQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR 184
              +        K  R L+   E +     +AF            + +         +W 
Sbjct: 134 GTVKLWDLSTPGKLIRTLEGHSESVTS---LAFSPDGK------LLASGSSLDGTIKLWD 184

Query: 185 LQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAGGWIERFNLQSGISRGSYLDM 243
           L+    G+ +          V +   S  G   +   ++ G I  ++L +G    S L  
Sbjct: 185 LRT---GKPLSTLAGHTDP-VSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS- 239

Query: 244 SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK--GRDLKSRWEVGCSLVKIVY 301
                  H+  VV  +     +L+ S    G I++WD +     L++      S++ + +
Sbjct: 240 ------GHSDSVVS-SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAF 292

Query: 302 HRVNGLLATVADDLVIRLFDV--VALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM-DGS 358
                LLA+ + D  +RL+D+    L      +GH   ++   FS DG  L+S G  DG+
Sbjct: 293 SPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGT 352

Query: 359 LRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLW 404
           +R+WD+   + +  +    ++ ++S SP+  V+++   D   V LW
Sbjct: 353 IRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTD-GTVRLW 397

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 72.0 bits (177), Expect = 9e-14
 Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 6/130 (4%)

Query: 2   RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL 61
              V ++AFS DG   +AS +  G I +W+L   +  + +   H   + S+ F  +   L
Sbjct: 135 TDWVNSVAFSPDGT-FVASSSQDGTIKLWDLRTGKCVATL-TGHTGEVNSVAFSPDGEKL 192

Query: 62  MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 121
           +S+S+D +IK+W  D + G  + L    GH      + F  +G  + S  +D   R++ +
Sbjct: 193 LSSSSDGTIKLW--DLSTG--KCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDL 248

Query: 122 IQDQQSRELS 131
              +  + LS
Sbjct: 249 RTGECVQTLS 258

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 70.1 bits (170), Expect = 1e-12
 Identities = 64/286 (22%), Positives = 110/286 (38%), Gaps = 36/286 (12%)

Query: 5   VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA 64
           V++LAFS DG  L+ASG+S G I +W+L   +L       H ++++S  F  +  +L S 
Sbjct: 201 VSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSLLASG 259

Query: 65  SADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQD 124
           S+D +I++W          LLR  SGHS+  L + F  +G+ + S   D   RL+ +   
Sbjct: 260 SSDGTIRLW---DLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETG 316

Query: 125 QQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR 184
                          + L     +    PV +   +     D   +V+   D     +W 
Sbjct: 317 ---------------KLLSSLTLKGHEGPVSSLSFSP----DGSLLVSGGSDDGTIRLWD 357

Query: 185 LQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMS 244
           L+             E  + V + + S  G     G+  G +  ++L +G          
Sbjct: 358 LR-----TGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLL------- 405

Query: 245 ERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRW 290
            R+   H   V  +        + S      I++WD K       +
Sbjct: 406 -RNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSF 450

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 65.8 bits (161), Expect = 1e-11
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 2   RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL 61
              V ++AFS DG  LLASG+  G I +W+L        +   H N++ SL +  +   L
Sbjct: 219 ENGVNSVAFSPDGY-LLASGSEDGTIRVWDLRTGECVQTL-SGHTNSVTSLAWSPDGKRL 276

Query: 62  MSASADNSIKMW 73
            S SAD +I++W
Sbjct: 277 ASGSADGTIRIW 288

Length = 289

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 52.7 bits (127), Expect = 2e-09
 Identities = 16/36 (44%), Positives = 22/36 (61%)

Query: 328 VRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 363
           +R  +GHT  +T   FS DG  L S   DG++R+WD
Sbjct: 4   LRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 52.3 bits (126), Expect = 3e-09
 Identities = 15/36 (41%), Positives = 24/36 (66%)

Query: 328 VRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 363
           ++  +GHT  +T   FS DGK+L S   DG++++WD
Sbjct: 5   LKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 54.6 bits (132), Expect = 5e-08
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 2/79 (2%)

Query: 327 MVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV-DVSITALSLS 385
           + R  +GHT  +T   FS DGK L +   DG++++WD+     +  +      +  ++ S
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 386 PNMDVLATAHVDQNGVYLW 404
            +   LA+   D   + LW
Sbjct: 61  ADGTYLASGSSD-KTIRLW 78

Length = 289

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 8/31 (25%), Positives = 17/31 (54%)

Query: 43 EAHDNAIISLHFFANEPVLMSASADNSIKMW 73
          + H   + S+ F  +  +L S S D ++++W
Sbjct: 8  KGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 43 EAHDNAIISLHFFANEPVLMSASADNSIKMW 73
          + H   + S+ F  +   L S S D +IK+W
Sbjct: 9  KGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 35.4 bits (82), Expect = 0.003
 Identities = 12/35 (34%), Positives = 16/35 (45%)

Query: 246 RSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD 280
           R+   H G V  VA      L+ S    G ++VWD
Sbjct: 5   RTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|215343 PLN02638, PLN02638, cellulose synthase A (UDP-forming), catalytic subunit

 Score = 39.9 bits (93), Expect = 0.004
 Identities = 42/124 (33%), Positives = 55/124 (44%), Gaps = 11/124 (8%)

Query: 500 EPPKKPE-KAPFFLPSVPSLSGEILFKPSESTKEDTESLKVGNKTKPDIPVSQFIQLLHS 558
           EPP KP+ K P FL S   L G    K S+S+K+ ++  K G    P +PV      L  
Sbjct: 642 EPPIKPKHKKPGFLSS---LCGGSRKKSSKSSKKGSDKKKSGKHVDPTVPVFN----LED 694

Query: 559 CAEMKNFSAFTDYIKSLSPSTLDMELRMLQ--IIDHDDHQELDKRPEYLSIELLLDYLIH 616
             E    + F D  KSL  S + +E R  Q  +       E    P+  + E LL   IH
Sbjct: 695 IEEGVEGAGFDDE-KSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATPESLLKEAIH 753

Query: 617 EISC 620
            ISC
Sbjct: 754 VISC 757

Length = 1079

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	685
KOG1539	910	consensus WD repeat protein [General function pred	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
PF04192	237	Utp21: Utp21 specific WD40 associated putative dom	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.98
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.98
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.98
KOG0643	327	consensus Translation initiation factor 3, subunit	99.98
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.98
KOG0289	506	consensus mRNA splicing factor [General function p	99.98
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
KOG1539	910	consensus WD repeat protein [General function pred	99.97
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.97
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.97
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG2096	420	consensus WD40 repeat protein [General function pr	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.96
KOG2055	514	consensus WD40 repeat protein [General function pr	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.96
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.96
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.96
KOG0639	705	consensus Transducin-like enhancer of split protei	99.96
KOG1274	933	consensus WD40 repeat protein [General function pr	99.96
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
KOG0646	476	consensus WD40 repeat protein [General function pr	99.96
KOG1273	405	consensus WD40 repeat protein [General function pr	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.95
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
PTZ00420	568	coronin; Provisional	99.95
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.94
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.94
KOG2048	691	consensus WD40 repeat protein [General function pr	99.94
KOG2096	420	consensus WD40 repeat protein [General function pr	99.94
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.94
KOG2048	691	consensus WD40 repeat protein [General function pr	99.94
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.94
KOG4328	498	consensus WD40 protein [Function unknown]	99.94
KOG0639	705	consensus Transducin-like enhancer of split protei	99.94
KOG0646	476	consensus WD40 repeat protein [General function pr	99.94
KOG1274	933	consensus WD40 repeat protein [General function pr	99.94
KOG2055	514	consensus WD40 repeat protein [General function pr	99.94
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.94
KOG1273	405	consensus WD40 repeat protein [General function pr	99.94
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.94
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.94
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.94
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.93
KOG0641	350	consensus WD40 repeat protein [General function pr	99.93
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.93
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.93
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.93
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.93
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.93
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.92
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.92
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.92
KOG4328	498	consensus WD40 protein [Function unknown]	99.91
KOG0267	825	consensus Microtubule severing protein katanin p80	99.91
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.91
KOG0267	825	consensus Microtubule severing protein katanin p80	99.91
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.91
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.9
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.89
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.89
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.89
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.89
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.89
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.89
COG2319	466	FOG: WD40 repeat [General function prediction only	99.88
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.88
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.88
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.88
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.87
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.87
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.87
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.87
COG2319	466	FOG: WD40 repeat [General function prediction only	99.87
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.87
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.86
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.86
KOG4227	609	consensus WD40 repeat protein [General function pr	99.86
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.85
KOG1963	792	consensus WD40 repeat protein [General function pr	99.85
PRK11028	330	6-phosphogluconolactonase; Provisional	99.85
PRK11028	330	6-phosphogluconolactonase; Provisional	99.85
KOG1310	758	consensus WD40 repeat protein [General function pr	99.84
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.84
KOG4547	541	consensus WD40 repeat-containing protein [General	99.84
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.84
KOG1188	376	consensus WD40 repeat protein [General function pr	99.83
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.83
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.83
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.83
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.83
KOG1188	376	consensus WD40 repeat protein [General function pr	99.83
KOG4227	609	consensus WD40 repeat protein [General function pr	99.82
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.82
KOG1963	792	consensus WD40 repeat protein [General function pr	99.82
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.82
KOG0649	325	consensus WD40 repeat protein [General function pr	99.81
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.81
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.81
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.8
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.79
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.78
KOG0649	325	consensus WD40 repeat protein [General function pr	99.78
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.78
KOG1334	559	consensus WD40 repeat protein [General function pr	99.78
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.78
KOG1334	559	consensus WD40 repeat protein [General function pr	99.77
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.77
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.77
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.77
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.76
PRK01742	429	tolB translocation protein TolB; Provisional	99.76
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.75
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.75
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.75
PRK01742	429	tolB translocation protein TolB; Provisional	99.74
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.74
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.74
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.74
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.73
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.72
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.72
KOG2321	703	consensus WD40 repeat protein [General function pr	99.71
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.71
KOG2321	703	consensus WD40 repeat protein [General function pr	99.7
KOG2139	445	consensus WD40 repeat protein [General function pr	99.7
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.69
PRK04922	433	tolB translocation protein TolB; Provisional	99.69
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.69
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.68
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.68
PRK03629	429	tolB translocation protein TolB; Provisional	99.67
KOG2139	445	consensus WD40 repeat protein [General function pr	99.67
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.66
KOG2315	566	consensus Predicted translation initiation factor	99.66
PRK03629	429	tolB translocation protein TolB; Provisional	99.66
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.66
PRK02889	427	tolB translocation protein TolB; Provisional	99.66
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.66
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.65
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.64
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.64
PRK05137	435	tolB translocation protein TolB; Provisional	99.63
PRK04922	433	tolB translocation protein TolB; Provisional	99.63
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.63
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.63
PRK02889	427	tolB translocation protein TolB; Provisional	99.61
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.61
KOG2314	698	consensus Translation initiation factor 3, subunit	99.6
PRK05137	435	tolB translocation protein TolB; Provisional	99.6
KOG1310	758	consensus WD40 repeat protein [General function pr	99.6
COG4946	668	Uncharacterized protein related to the periplasmic	99.58
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.57
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.56
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.56
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.55
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.55
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.53
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.52
KOG2315	566	consensus Predicted translation initiation factor	99.48
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.48
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.48
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.47
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.47
PRK04792	448	tolB translocation protein TolB; Provisional	99.47
PRK00178	430	tolB translocation protein TolB; Provisional	99.46
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.46
PRK00178	430	tolB translocation protein TolB; Provisional	99.46
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.45
PRK04792	448	tolB translocation protein TolB; Provisional	99.44
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.43
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.42
COG4946	668	Uncharacterized protein related to the periplasmic	99.42
PRK01029	428	tolB translocation protein TolB; Provisional	99.42
PRK01029	428	tolB translocation protein TolB; Provisional	99.42
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.4
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.4
KOG4547	541	consensus WD40 repeat-containing protein [General	99.39
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.38
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.37
PF04003	110	Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A la	99.35
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.33
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	99.33
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.31
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.3
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.27
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.26
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.25
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.24
KOG2314	698	consensus Translation initiation factor 3, subunit	99.24
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.24
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.21
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.15
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.14
PRK04043	419	tolB translocation protein TolB; Provisional	99.14
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.13
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.12
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.11
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.1
PRK04043	419	tolB translocation protein TolB; Provisional	99.09
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.07
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.05
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.04
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.01
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.01
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.0
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.96
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.9
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.87
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.87
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.87
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.85
PRK02888	635	nitrous-oxide reductase; Validated	98.85
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.83
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.83
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.81
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.81
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.8
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.79
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.78
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.78
KOG2695	425	consensus WD40 repeat protein [General function pr	98.75
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.74
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.72
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.69
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.67
KOG2695	425	consensus WD40 repeat protein [General function pr	98.64
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.63
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.61
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.61
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.61
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.6
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.59
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.55
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.54
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.54
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.53
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.53
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.52
PRK02888	635	nitrous-oxide reductase; Validated	98.49
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.42
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.41
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.4
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.39
COG3391	381	Uncharacterized conserved protein [Function unknow	98.39
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.34
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.32
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.32
KOG3621	726	consensus WD40 repeat-containing protein [General	98.31
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.31
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	98.3
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.28
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.26
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.25
KOG3621	726	consensus WD40 repeat-containing protein [General	98.25
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.23
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.21
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.19
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.18
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.18
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.18
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.14
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	98.14
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.11
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.11
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.1
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.1
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	98.09
COG3391	381	Uncharacterized conserved protein [Function unknow	98.09
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.07
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.04
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.03
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.93
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.92
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.91
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.89
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.85
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.76
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.69
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.66
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.59
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.56
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.55
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	97.52
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.47
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.42
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.41
PRK13616	591	lipoprotein LpqB; Provisional	97.3
PRK13616	591	lipoprotein LpqB; Provisional	97.3
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.3
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.28
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.26
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.21
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.2
PF09384	148	UTP15_C: UTP15 C terminal; InterPro: IPR018983 Thi	97.19
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	97.12
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.09
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.08
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.06
KOG2395	644	consensus Protein involved in vacuole import and d	97.04
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.03
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.02
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.01
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.96
PHA02713	557	hypothetical protein; Provisional	96.93
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.9
KOG2444	238	consensus WD40 repeat protein [General function pr	96.9
PHA02713	557	hypothetical protein; Provisional	96.89
PRK10115	686	protease 2; Provisional	96.88
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.84
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.74
KOG2444	238	consensus WD40 repeat protein [General function pr	96.66
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.6
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.59
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.56
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.55
PF08625	141	Utp13: Utp13 specific WD40 associated domain; Inte	96.53
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.51
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.48
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.41
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.4
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.26
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.25
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.23
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.21
COG5276	370	Uncharacterized conserved protein [Function unknow	96.1
KOG2395	644	consensus Protein involved in vacuole import and d	96.09
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.08
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	96.07
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.06
PRK13684	334	Ycf48-like protein; Provisional	95.97
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.65
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.61
PHA03098	534	kelch-like protein; Provisional	95.55
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.54
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.5
PF14727	418	PHTB1_N: PTHB1 N-terminus	95.47
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.4
PHA03098	534	kelch-like protein; Provisional	95.38
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.37
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.35
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.27
KOG2377	657	consensus Uncharacterized conserved protein [Funct	95.26
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	95.17
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.11
PRK10115	686	protease 2; Provisional	95.09
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.92
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	94.91
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	94.69
PHA02790	480	Kelch-like protein; Provisional	94.67
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	94.65
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.65
PRK13684	334	Ycf48-like protein; Provisional	94.52
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	94.39
KOG2377	657	consensus Uncharacterized conserved protein [Funct	94.31
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	94.08
PF13449	326	Phytase-like: Esterase-like activity of phytase	93.97
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	93.94
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	93.89
PHA02790	480	Kelch-like protein; Provisional	93.76
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	93.73
COG5167	776	VID27 Protein involved in vacuole import and degra	93.32
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	93.32
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	93.27
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.26
PF13449	326	Phytase-like: Esterase-like activity of phytase	93.25
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	93.07
KOG3616	1636	consensus Selective LIM binding factor [Transcript	92.73
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.2
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.02
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	91.86
COG5276	370	Uncharacterized conserved protein [Function unknow	91.83
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	91.66
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	91.49
COG4590	733	ABC-type uncharacterized transport system, permeas	91.14
PLN00033	398	photosystem II stability/assembly factor; Provisio	91.07
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	90.9
COG3292	671	Predicted periplasmic ligand-binding sensor domain	90.87
COG5167	776	VID27 Protein involved in vacuole import and degra	90.86
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	90.79
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	90.72
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	90.22
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	90.07
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	89.51
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	89.22
KOG2247	615	consensus WD40 repeat-containing protein [General	88.94
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	88.88
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	88.82
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	88.82
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	88.67
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	88.17
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	88.11
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	87.84
PLN02193	470	nitrile-specifier protein	87.75
KOG2247	615	consensus WD40 repeat-containing protein [General	87.65
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	87.15
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	87.04
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	86.84
PLN02153	341	epithiospecifier protein	86.79
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	86.74
PLN02153	341	epithiospecifier protein	86.57
COG4590	733	ABC-type uncharacterized transport system, permeas	86.26
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	85.72
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	85.54
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	85.42
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	85.4
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	85.28
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	85.22
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	85.18
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	85.04

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=1.4e-110  Score=849.10  Aligned_cols=658  Identities=44%  Similarity=0.740  Sum_probs=592.0

Q ss_pred             CCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCC
Q 005656            2 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD   81 (685)
Q Consensus         2 ~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~   81 (685)
                      .|+|++++|+.||.++||+|+..|.+.+||++..+.+..++..|.+.|....|.|..+.++|++.|+++++|-++++++.
T Consensus       244 ~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~  323 (910)
T KOG1539|consen  244 WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGV  323 (910)
T ss_pred             ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCc
Confidence            38999999999999999999999999999999999999999899999999999999999999999999999999999999


Q ss_pred             CceeEecccCCCCCeEEEEe-cCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccc-ccccccCceeeeec
Q 005656           82 PRLLRFRSGHSAPPLCIRFY-ANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK-EEELKLKPVIAFDC  159 (685)
Q Consensus        82 ~~~~~~~~~h~~~v~~i~~~-~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  159 (685)
                      +++++.+.||..|+.||+|+ .+|.++++++.|++++.+++....+.+++.+.+..+++++.+.. ....+++|+..|+.
T Consensus       324 pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~  403 (910)
T KOG1539|consen  324 PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAF  403 (910)
T ss_pred             chheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeec
Confidence            99999999999999999999 57999999999999999999999988888886666777777766 78899999999999


Q ss_pred             ccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCC--CCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccc
Q 005656          160 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE--NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR  237 (685)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~  237 (685)
                      ...|+.+|++++++|.+....++|++++...|.+.+.+.+.  ....++++++++||++.++|++.|.|.+||+++|.++
T Consensus       404 ~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r  483 (910)
T KOG1539|consen  404 ENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHR  483 (910)
T ss_pred             ccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeee
Confidence            99999999999999999999999999999999999987643  4467899999999999999999999999999999999


Q ss_pred             cccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeE
Q 005656          238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVI  317 (685)
Q Consensus       238 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I  317 (685)
                      ..|.     ....|.++|++++.+..++.+++++.+|.+++||+.++.++..+..+..+.++.++....+++++++|-.|
T Consensus       484 ~sf~-----~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I  558 (910)
T KOG1539|consen  484 KSFG-----DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSI  558 (910)
T ss_pred             cccc-----cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeE
Confidence            9985     23489999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeC
Q 005656          318 RLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVD  397 (685)
Q Consensus       318 ~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d  397 (685)
                      +++|..+.+.++.|.||.+.|++++|||||+||++++.|++|++||++++.+++.+..+.+++++.|||+|++|||+|.|
T Consensus       559 ~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd  638 (910)
T KOG1539|consen  559 RVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVD  638 (910)
T ss_pred             EEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEEcCCCcCCCCCCCCCCCCccceeecCCCccCCCCcCCCCCCCCCCcCCCCCCCCCCCCCCcCCCCcCceeecC
Q 005656          398 QNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSL  477 (685)
Q Consensus       398 ~~~I~lW~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~  477 (685)
                      +++|++|.|+.+|..+ .+++++.++.+..+.+|+.+.+.+.++++..      -|.. ++...|.+++|++++|+|||.
T Consensus       639 ~~gIylWsNkslF~~v-s~r~~~~~~~~~~v~lPst~~~~d~e~~~~t------LE~~-~e~i~y~~~eQldeeLvTlS~  710 (910)
T KOG1539|consen  639 QNGIYLWSNKSLFKSV-STRAIPADYVPSWVMLPSTCDEDDDEDDEVT------LESN-DEDIKYSSPEQLDEELVTLSK  710 (910)
T ss_pred             CceEEEEEchhHheec-cccccCcccccceeecCcccccccchhhhhh------hhcc-ccccccCChhHhChhhhhhcc
Confidence            9999999999999999 6889999998899999996655544332221      1111 223389999999999999999


Q ss_pred             CcHhHHhhccchHHHHhhcCCCCCCCCCCCCCccccCCCCCCCccccCCCCCccccccccccCCCCC--CCCCccHHHHH
Q 005656          478 LPKSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEILFKPSESTKEDTESLKVGNKTK--PDIPVSQFIQL  555 (685)
Q Consensus       478 ~~~~~~~~~~~l~~i~~r~k~~~~~~~~~~~pffl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  555 (685)
                      ||++||++|+|||.||+||||+||||+|++||||||+++. ++.....+..+  ++++++.+..-++  ....+++|.++
T Consensus       711 lp~Srwq~Ll~LelIk~RnkPke~PK~pkkaPFFLp~~~s-~g~v~e~~~~~--~~~~~~~~~~ik~~~~L~~es~F~~~  787 (910)
T KOG1539|consen  711 LPRSRWQNLLNLELIKKRNKPKEPPKKPKKAPFFLPKVPS-EGLVLETPAAE--ELNKEEDENKIKKLGLLELESSFTTL  787 (910)
T ss_pred             CcHHHhhhcccHHHHHhcCCCCCCCCccccCCcccccCCc-ccccccCcchh--hhcchhhhhhhhccccccccchHHHH
Confidence            9999999999999999999999999999999999999995 22111112111  1111111111122  22348999999


Q ss_pred             HhhccccCChHHHHHHHhcCCcchhhhhhccCCCCCCCCcccccCcccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 005656          556 LHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFL  635 (685)
Q Consensus       556 l~~~~~~~~~~~~~~~l~~~~~s~id~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~e~~~~~l~~~l  635 (685)
                      |+++..+++|..++++|++++||+||+|||+|....          +++..+..|++++.++|.+++||||+|||+++|+
T Consensus       788 Lre~~~s~~~~~~~~~L~~~~psaiD~eiRsL~d~~----------~~~~~~~~Fi~~l~~~l~~k~nFEL~qa~~slf~  857 (910)
T KOG1539|consen  788 LREGKDSKDFLDAFALLKNLSPSAIDFEIRSLNDAG----------ETIEEMVIFIKMLTQMLKTKRNFELVQAYMSLFL  857 (910)
T ss_pred             HhhccccccHHHHHHHHHhcCcchheeehhhhhccC----------cchHHHHHHHHHHHHHhccccCHHHHHHHHHHHH
Confidence            999999999999999999999999999999995211          3789999999999999999999999999999999


Q ss_pred             Hhhccccccch---HHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhccccCC
Q 005656          636 KIHGETVRCHT---KLQDKARKLLEVQSAVWQKIDKMFQSARCVVSFLSNSQL  685 (685)
Q Consensus       636 ~~h~~~l~~~~---~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  685 (685)
                      |+||..|..++   +|.+.|+.+.++|+.+|++|+++|.+|+|+|.|++++++
T Consensus       858 K~H~~~l~~~~~~~dl~e~l~~~~~v~~e~wq~le~l~~~~mgvl~~l~nall  910 (910)
T KOG1539|consen  858 KSHGLVLWNHEGPEDLTEELQNWEEVQSEEWQRLEELFLYCMGVLAFLKNALL  910 (910)
T ss_pred             HhhhhhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHhhccC
Confidence            99999997555   799999999999999999999999999999999999874

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.8e-55  Score=440.41  Aligned_cols=638  Identities=17%  Similarity=0.260  Sum_probs=456.3

Q ss_pred             CCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCC--------eeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEE
Q 005656            2 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKR--------RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMW   73 (685)
Q Consensus         2 ~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~--------~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iW   73 (685)
                      +.+|.|+.|||||+ ++|+|. .+.+.||.....        .+.++.. +|...|+++.|+.|.++|++||.|.++++|
T Consensus        96 k~~v~~i~fSPng~-~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~-g~fddi~si~Ws~DSr~l~~gsrD~s~rl~  172 (893)
T KOG0291|consen   96 KRGVGAIKFSPNGK-FFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYL-GHFDDITSIDWSDDSRLLVTGSRDLSARLF  172 (893)
T ss_pred             cCccceEEECCCCc-EEEEEe-cceeEEEecCcchhcccCcceEeeeec-CCccceeEEEeccCCceEEeccccceEEEE
Confidence            57899999999999 777765 577999987542        2345555 899999999999999999999999999999


Q ss_pred             EecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCce--ee-----------------------
Q 005656           74 IFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ--SR-----------------------  128 (685)
Q Consensus        74 d~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~--~~-----------------------  128 (685)
                      .++...+  -....+.+|..+|.+.-|..+...+++.+.||.+.+|.......  ..                       
T Consensus       173 ~v~~~k~--~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~  250 (893)
T KOG0291|consen  173 GVDGNKN--LFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHK  250 (893)
T ss_pred             Eeccccc--cceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcc
Confidence            9987644  34566789999999999999999999999999999998862100  00                       


Q ss_pred             ---Eec-hhhHHHHHhhccccccccc-cCceeeeeccccc-------------------------ccCCcceEEEEcCCc
Q 005656          129 ---ELS-QRHVAKRARKLKMKEEELK-LKPVIAFDCAEIR-------------------------ERDWCNVVTCHMDTA  178 (685)
Q Consensus       129 ---~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~  178 (685)
                         ... .........++........ ..-++.|+.....                         ...++.+......-+
T Consensus       251 ~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klg  330 (893)
T KOG0291|consen  251 IFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLG  330 (893)
T ss_pred             eEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccc
Confidence               000 0000000000000000000 0000111111110                         112334445555567


Q ss_pred             eEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEE
Q 005656          179 QAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGV  258 (685)
Q Consensus       179 ~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l  258 (685)
                      .+.+|+.+...    ......+|...+.+++++|||.++++|++||.|++||.++|-+..+|.        .|+..|+++
T Consensus       331 QLlVweWqsEs----YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt--------eHts~Vt~v  398 (893)
T KOG0291|consen  331 QLLVWEWQSES----YVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFT--------EHTSGVTAV  398 (893)
T ss_pred             eEEEEEeeccc----eeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEec--------cCCCceEEE
Confidence            88888876532    222334788999999999999999999999999999999999999886        899999999


Q ss_pred             EEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCc--eeEEEEeecCCEEEEEeCCC-eEEEEEcCCCeeEEEEecCC
Q 005656          259 ACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCS--LVKIVYHRVNGLLATVADDL-VIRLFDVVALRMVRKFEGHT  335 (685)
Q Consensus       259 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~dg-~I~i~d~~~~~~~~~~~~h~  335 (685)
                      .|+..|+.+++++.||+|+.||+...+..+++..+.+  ..|++..|.|.++.+|+.|. .|++|++++|+.+-.+.||.
T Consensus       399 ~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHE  478 (893)
T KOG0291|consen  399 QFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHE  478 (893)
T ss_pred             EEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCC
Confidence            9999999999999999999999999999999988754  56788888899999998876 79999999999999999999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEcCCCcCCCC
Q 005656          336 DRITDFCFSEDGKWLLSSGMDGSLRIWDVIL-ARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDS  414 (685)
Q Consensus       336 ~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~-~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~~~~~~~  414 (685)
                      ++|.+++|+|+|..|+++|.|.+||+||+-. ...+.++...+.++.++|+|||+-||+++.|| .|.+|+......-..
T Consensus       479 gPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldg-qItf~d~~~~~q~~~  557 (893)
T KOG0291|consen  479 GPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDG-QITFFDIKEAVQVGS  557 (893)
T ss_pred             CcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecc-eEEEEEhhhceeecc
Confidence            9999999999999999999999999999865 45678888888999999999999999999998 999999766543211


Q ss_pred             --CCCCCCCCccceeecCCCccCCCC------cCCCCCCCCCCcCCCCCCCCCCCCCCcCCCCcCceeecC---------
Q 005656          415 --NIDSYASGKEIVSVKMPSVSSVEG------CQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSL---------  477 (685)
Q Consensus       415 --~~~~~~~~~~~~~~~~p~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~---------  477 (685)
                        ....+..++.....-.....+...      -+.+....-    ..+.......|..+++..-....+|.         
T Consensus       558 IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~Il----AgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~e  633 (893)
T KOG0291|consen  558 IDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCIL----AGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLE  633 (893)
T ss_pred             ccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEE----ecCCcccEEEEECchhheeeeEEeccccchhHHHH
Confidence              111121221111000000000000      000000000    11222233344444443333333332         


Q ss_pred             -CcHhHHhhccchHHHHhhcCCCCCCCC---CCC----------C-------CccccCCC--------C-----CCCccc
Q 005656          478 -LPKSQWQSLINLDIIKARNKPIEPPKK---PEK----------A-------PFFLPSVP--------S-----LSGEIL  523 (685)
Q Consensus       478 -~~~~~~~~~~~l~~i~~r~k~~~~~~~---~~~----------~-------pffl~~~~--------~-----~~~~~~  523 (685)
                       |.+.++...-+++.|..++--.|+.-.   |..          .       --|.||..        |     ++..++
T Consensus       634 fln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAaatTEGl~IYsld~~~~  713 (893)
T KOG0291|consen  634 FLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAAATTEGLLIYSLDTTIL  713 (893)
T ss_pred             HhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECCCcCeeeeecccceEEEecCCceE
Confidence             445566666677777765544443211   000          0       12334322        2     333455


Q ss_pred             cCCCCCccccccccccCCCCCCCCCccHHHHHHhhccccCChHHHHHHHhcCCcchhhhhhccCCCCCCCCcccccCccc
Q 005656          524 FKPSESTKEDTESLKVGNKTKPDIPVSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPE  603 (685)
Q Consensus       524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~s~id~~i~~l~~~~~~~~~~~~~~~~  603 (685)
                      |+|-..     +.+..+...+....+.+|.+.|..+++.|+|..+-++|.+.++..|.+...+|+               
T Consensus       714 FDPf~L-----D~~vTPe~v~~al~~qey~~AlvmslRLNe~~lI~evlesvp~~~Ie~V~~~Lp---------------  773 (893)
T KOG0291|consen  714 FDPFDL-----DVDVTPESVREALREQEYLKALVMSLRLNEYKLIKEVLESVPIKDIELVASSLP---------------  773 (893)
T ss_pred             Eccccc-----ccccCHHHHHHHHhcchHHHHHHHHHhcCHHHHHHHHHHhCChhhhhhhhhcCc---------------
Confidence            555322     111111112222336789999999999999999999999999999999999885               


Q ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccccccchH-HHHHHHHHHHHHHHHHHHHHHhhhccchhhhhcc
Q 005656          604 YLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETVRCHTK-LQDKARKLLEVQSAVWQKIDKMFQSARCVVSFLS  681 (685)
Q Consensus       604 ~~~~~~~l~~l~~~l~~~~~~e~~~~~l~~~l~~h~~~l~~~~~-l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  681 (685)
                      ..++..+|++|...+...++.|++..|++.+|..||.+|.+... +.+.|..|++.+.+..+.+-+++.+|..+|+||-
T Consensus       774 ~~y~erll~~l~~~l~~s~HieF~l~W~~~il~~hG~~~~~~~~~~~~~~~~lqk~i~r~~~~l~kl~~~Nky~L~~lv  852 (893)
T KOG0291|consen  774 TAYLERLLKALSRFLENSPHIEFYLRWLRAILTYHGSSLKRRAETLLPALTSLQKSIVRHIDDLSKLCSLNKYTLRYLV  852 (893)
T ss_pred             HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhhhhhccceehhhHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence            47899999999999999999999999999999999999977655 6788999999999999999999999999999984

>PF04192 Utp21: Utp21 specific WD40 associated putative domain ; InterPro: IPR007319 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]

Probab=100.00  E-value=2.5e-55  Score=409.11  Aligned_cols=214  Identities=41%  Similarity=0.710  Sum_probs=185.0

Q ss_pred             CCCCCcCCCCcCceeecCCcHhHHhhccchHHHHhhcCCCCCCCCCCCCCccccCCCCCCCccc--cCCCCCcccccccc
Q 005656          460 FGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEIL--FKPSESTKEDTESL  537 (685)
Q Consensus       460 ~~~~~~~~~~~~~~~ls~~~~~~~~~~~~l~~i~~r~k~~~~~~~~~~~pffl~~~~~~~~~~~--~~~~~~~~~~~~~~  537 (685)
                      ..|.+++|+.+++||||++|++||++|+|||.||+||||++|||+|++|||||||++++++.+.  .......+.+.+..
T Consensus        17 ~~~~s~~Qi~~~LiTLS~lP~srWq~Ll~LD~IK~RNKPkeppKkPe~APFFLpt~~~~~~~~~~~~~~~~~~~~~~~~~   96 (237)
T PF04192_consen   17 IEYSSPEQIDEDLITLSGLPRSRWQNLLNLDVIKERNKPKEPPKKPEKAPFFLPTLPGLEPRFQDAFESEEEEEEEEERS   96 (237)
T ss_pred             cccCChhhhCccceeeccCCHHHHHHHHHHHHHHHhCCCCCCCCCcCCCCcccCcCCCCCccccccccccccccchhhhh
Confidence            3489999999999999999999999999999999999999999999999999999999888762  11111100000000


Q ss_pred             c--cCCCCCCCCCccHHHHHHhhccccCChHHHHHHHhcCCcchhhhhhccCCCCCCCCcccccCcccHHHHHHHHHHHH
Q 005656          538 K--VGNKTKPDIPVSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLI  615 (685)
Q Consensus       538 ~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~s~id~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~  615 (685)
                      .  ..........++.|+++|.++...+||..+++|||+|+||+||+|||+|++..+         +++..|..||+||+
T Consensus        97 ~~~~~~~~~~~~~~s~f~~lL~~~~~~~dy~~~~~~LkslsPS~iDlEIRsL~~~~~---------~~~~~l~~Fl~~l~  167 (237)
T PF04192_consen   97 RLRKLKKDNSLDFESEFTRLLRSASESEDYSEFLEYLKSLSPSAIDLEIRSLSPESG---------GSYEELVSFLRFLT  167 (237)
T ss_pred             hhhhcccccCccccCHHHHHHHhhcccccHHHHHHHHHhCChhHHHHHHHhccCccC---------CcHHHHHHHHHHHH
Confidence            0  111112233689999999999999999999999999999999999999996443         37899999999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHhhccccccchH---HHHHHHHHHHHHHHHHHHHHHhhhccchhhhhccc
Q 005656          616 HEISCRNNFEFIQAVIRLFLKIHGETVRCHTK---LQDKARKLLEVQSAVWQKIDKMFQSARCVVSFLSN  682 (685)
Q Consensus       616 ~~l~~~~~~e~~~~~l~~~l~~h~~~l~~~~~---l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  682 (685)
                      ++|++++||||+|+||++|||+||+.|++.++   |++.|.+|+++|++.|.+|+++|+||+|+|+||++
T Consensus       168 ~~L~~~~dfElvQa~l~vFLk~Hgd~i~~~~~~~~L~~~l~~l~~~q~~~w~~L~~l~~~~~cvv~fl~~  237 (237)
T PF04192_consen  168 YRLKSRRDFELVQAYLSVFLKVHGDVIMESEEEEELREALEELREAQESEWKRLDDLFQYCSCVVSFLRS  237 (237)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcC
Confidence            99999999999999999999999999999988   99999999999999999999999999999999986

This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp21 is a component of the SSU processome, which is required for pre-18S rRNA processing. It interacts with Utp18 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.3e-53  Score=392.93  Aligned_cols=322  Identities=19%  Similarity=0.302  Sum_probs=292.5

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG   80 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~   80 (685)
                      |.++|-|++|+|+|. .||+|+.|.++++||+.+..+..+.+ +|...|.|++|+|||+.||+|+.||+|++||..++. 
T Consensus       114 H~e~Vl~~~fsp~g~-~l~tGsGD~TvR~WD~~TeTp~~t~K-gH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~-  190 (480)
T KOG0271|consen  114 HGEAVLSVQFSPTGS-RLVTGSGDTTVRLWDLDTETPLFTCK-GHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ-  190 (480)
T ss_pred             CCCcEEEEEecCCCc-eEEecCCCceEEeeccCCCCcceeec-CCccEEEEEEECCCcchhhccccCCeEEEecCCCCC-
Confidence            889999999999999 99999999999999999999999999 999999999999999999999999999999987775 


Q ss_pred             CCceeEecccCCCCCeEEEEec-----CCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCcee
Q 005656           81 DPRLLRFRSGHSAPPLCIRFYA-----NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI  155 (685)
Q Consensus        81 ~~~~~~~~~~h~~~v~~i~~~~-----~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (685)
                        ...+.+.+|...|++++|.|     ..++|++++.||.++|||+..+.+...+.                        
T Consensus       191 --~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls------------------------  244 (480)
T KOG0271|consen  191 --QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS------------------------  244 (480)
T ss_pred             --cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEec------------------------
Confidence              45567789999999999976     47799999999999999998887766654                        


Q ss_pred             eeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCc
Q 005656          156 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI  235 (685)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~  235 (685)
                                                                  +|..+|+|+.|-.+ .++++|+.|++|++|+...|.
T Consensus       245 --------------------------------------------gHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~  279 (480)
T KOG0271|consen  245 --------------------------------------------GHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGK  279 (480)
T ss_pred             --------------------------------------------cCccceEEEEEcCC-ceEEecCCCceEEEEEccchh
Confidence                                                        88999999999865 489999999999999999998


Q ss_pred             cccccccccccccCCCCcCEEEEEEc-----------CCCC-------------------------EEEEEECCCeEEEE
Q 005656          236 SRGSYLDMSERSNYAHNGEVVGVACD-----------STNT-------------------------LMISAGYHGDIKVW  279 (685)
Q Consensus       236 ~~~~~~~~~~~~~~~h~~~v~~l~~~-----------~~~~-------------------------~l~s~s~dg~i~iw  279 (685)
                      ....+.        +|...|+.++.+           |.++                         .+++|+.|.++.+|
T Consensus       280 ~~r~lk--------GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW  351 (480)
T KOG0271|consen  280 LCRELK--------GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLW  351 (480)
T ss_pred             HHHhhc--------ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEe
Confidence            888775        999999998876           3233                         49999999999999


Q ss_pred             ECCC-CceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q 005656          280 DFKG-RDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG  357 (685)
Q Consensus       280 d~~~-~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg  357 (685)
                      +-.. .+++.....+ .-|+.+.|+||++++|+++-|.+|++||-++|+.+.+|+||-+.|+.++||.|.++|++||.|.
T Consensus       352 ~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDs  431 (480)
T KOG0271|consen  352 NPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDS  431 (480)
T ss_pred             cccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCc
Confidence            9653 4455555444 7899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656          358 SLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       358 ~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~  405 (685)
                      ++++|++.+.++...+.+|.. |.++.|+|||..+++++.|. .+++|.
T Consensus       432 TLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdk-v~~lw~  479 (480)
T KOG0271|consen  432 TLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDK-VLRLWR  479 (480)
T ss_pred             eEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCce-EEEeec
Confidence            999999999999999986665 99999999999999999997 999995

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.8e-47  Score=382.67  Aligned_cols=603  Identities=18%  Similarity=0.260  Sum_probs=413.0

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG   80 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~   80 (685)
                      |+..|+++.|+..|. .||+|+.|+.|.+||+-...-...++ ||.+.|+..-|..+.+++++.|.|+.|++||+++.  
T Consensus       106 HK~AVt~l~fd~~G~-rlaSGskDt~IIvwDlV~E~Gl~rL~-GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tq--  181 (888)
T KOG0306|consen  106 HKAAVTTLKFDKIGT-RLASGSKDTDIIVWDLVGEEGLFRLR-GHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQ--  181 (888)
T ss_pred             cccceEEEEEcccCc-eEeecCCCccEEEEEeccceeeEEee-cchHHHhHHhccCCCeEEEEeccCceEEEEecccc--
Confidence            889999999999999 99999999999999999988889998 99999999999998899999999999999999998  


Q ss_pred             CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCc------------------------eeeEe------
Q 005656           81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ------------------------QSREL------  130 (685)
Q Consensus        81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~------------------------~~~~~------  130 (685)
                        .+..+...|.+.++.+++.+  +.+++++.|+.+++|++....                        .....      
T Consensus       182 --hCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r  257 (888)
T KOG0306|consen  182 --HCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDR  257 (888)
T ss_pred             --eeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCccc
Confidence              78888889999999999987  689999999999999992110                        00000      


Q ss_pred             -----------------chh----hHHHH---Hhhccccc-----------------ccccc-Ccee-------------
Q 005656          131 -----------------SQR----HVAKR---ARKLKMKE-----------------EELKL-KPVI-------------  155 (685)
Q Consensus       131 -----------------~~~----~~~~~---~~~~~~~~-----------------~~~~~-~~~~-------------  155 (685)
                                       ...    ...++   .++.....                 ...+. ..+.             
T Consensus       258 ~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~  337 (888)
T KOG0306|consen  258 FLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENT  337 (888)
T ss_pred             EEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCccee
Confidence                             000    00110   11110000                 00000 0000             


Q ss_pred             ------------eeec-ccc-----c----------------ccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCC
Q 005656          156 ------------AFDC-AEI-----R----------------ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN  201 (685)
Q Consensus       156 ------------~~~~-~~~-----~----------------~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  201 (685)
                                  ++.. ...     +                ....++.+.++.....+.+|+......-...      .
T Consensus       338 lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi------~  411 (888)
T KOG0306|consen  338 LVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTI------T  411 (888)
T ss_pred             EEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEe------c
Confidence                        0000 000     0                0012345556666677888887654332222      1


Q ss_pred             CCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005656          202 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF  281 (685)
Q Consensus       202 ~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~  281 (685)
                      ...+.+..|-|.++++++|+.+|.+.+||+.+........        +|.+.|..++.+|+++.+++||.|.+|++||+
T Consensus       412 ~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~--------AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf  483 (888)
T KOG0306|consen  412 CGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIR--------AHDGAIWSISLSPDNKGFVTGSADKTVKFWDF  483 (888)
T ss_pred             cccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhh--------ccccceeeeeecCCCCceEEecCCcEEEEEeE
Confidence            3367888888888999999999999999988887776654        99999999999999999999999999999997


Q ss_pred             CC-----Cc--------eEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCC
Q 005656          282 KG-----RD--------LKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK  348 (685)
Q Consensus       282 ~~-----~~--------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~  348 (685)
                      .-     +.        ..+++.....|.|+.+||||++||++--|++|+||-+++-+..-.+.||.-||.+|..|||++
T Consensus       484 ~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSk  563 (888)
T KOG0306|consen  484 KLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSK  563 (888)
T ss_pred             EEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcC
Confidence            51     11        114555668999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCcEEEEEcCCCceeeEEeecc-ceEEEEEcCCCCeEEEEEeCCCeEEEEEcCC------CcCCCCCCCC---
Q 005656          349 WLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWVNRC------MFSGDSNIDS---  418 (685)
Q Consensus       349 ~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~-~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~------~~~~~~~~~~---  418 (685)
                      .++|||.|.+|+||-+.-|.|...+..|. .|.++.|-|...++.+++.|+ .|+-||-..      ...+...+..   
T Consensus       564 livTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~-kvKqWDg~kFe~iq~L~~H~~ev~cLav  642 (888)
T KOG0306|consen  564 LIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDG-KVKQWDGEKFEEIQKLDGHHSEVWCLAV  642 (888)
T ss_pred             eEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcc-eEEeechhhhhhheeeccchheeeeeEE
Confidence            99999999999999999999988876554 499999999999999999998 999997432      1122221111   


Q ss_pred             CCCCccceeecCCCccCCCCcCCCCC--CC-CCCcCCCCCCCCCCCCC--CcCCCCcCceeecCCcHhHHhhccchHHHH
Q 005656          419 YASGKEIVSVKMPSVSSVEGCQDENS--SQ-PDVHRTDRVPKDSFGLP--TFKQQIPDLVTLSLLPKSQWQSLINLDIIK  493 (685)
Q Consensus       419 ~~~~~~~~~~~~p~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ls~~~~~~~~~~~~l~~i~  493 (685)
                      .+.+.-+..-.........+..+|..  ++ .+.++++..++....+.  ..+...++..    .+.++ ++   ++.++
T Consensus       643 ~~~G~~vvs~shD~sIRlwE~tde~~~lEeekE~ErEe~yE~l~~~~e~~~~~~~~~g~~----~~~sk-kT---ieSvk  714 (888)
T KOG0306|consen  643 SPNGSFVVSSSHDKSIRLWERTDEILILEEEKEGEREEEYETLLASEEVVAGDGSADGDA----GVASK-KT---IESVK  714 (888)
T ss_pred             cCCCCeEEeccCCceeEeeeccCcceeeehhhhhhhHHHHHHhhhhcccccCCCcccccc----cchhh-hh---hHHHH
Confidence            11111111100000000000001000  00 00000111110000000  0000111100    00000 00   00000


Q ss_pred             hhcCCCCCCCCCCCCCccccCCCCCCCccccCCCCCccccccccccCCCCCCCCCccHHHHHHhhccccCChHHHHHHHh
Q 005656          494 ARNKPIEPPKKPEKAPFFLPSVPSLSGEILFKPSESTKEDTESLKVGNKTKPDIPVSQFIQLLHSCAEMKNFSAFTDYIK  573 (685)
Q Consensus       494 ~r~k~~~~~~~~~~~pffl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~  573 (685)
                      .-++..|+..                         ...++..+. ++.  +...   |...+|. +.....-+.+++.|+
T Consensus       715 ~aE~i~ea~d-------------------------i~~~e~~~~-ee~--~~g~---P~npll~-a~~ks~e~yi~dtl~  762 (888)
T KOG0306|consen  715 SAERILEALD-------------------------IGREELTQL-EEY--SPGH---PHNPLLN-AYNKSPEKYIVDTLM  762 (888)
T ss_pred             HHHHHHHHHH-------------------------HHHHHHHhH-Hhh--cCCC---CCcHHHH-HhcCCHHHHHHHHHH
Confidence            0000000000                         000000000 000  0000   1122332 222444578899999


Q ss_pred             cCCcchhhhhhccCCCCCCCCcccccCcccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccccccchHHHHHHH
Q 005656          574 SLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKAR  653 (685)
Q Consensus       574 ~~~~s~id~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~e~~~~~l~~~l~~h~~~l~~~~~l~~~~~  653 (685)
                      ..-.|.+|..+-.|               |++++..+|+++...++.+.+.||+...+-.++|+|.+.|++++++++.|+
T Consensus       763 ~Ir~S~Ld~aLlll---------------PfS~V~~vl~~i~~~~q~~~~veLv~rv~~fL~rih~~~it~~~~~kp~l~  827 (888)
T KOG0306|consen  763 KIRASELDDALLLL---------------PFSYVLDVLKFIDECIQRKSKVELVCRVLFFLLRIHHKQITAHKNMKPLLE  827 (888)
T ss_pred             hcchhhhhhhheec---------------cHHHHHHHHHHHHHHHcCCCcceeEeeeeeehhhhhhhhhccccchHHHHH
Confidence            99999999988877               578999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhccchhhhhcc
Q 005656          654 KLLEVQSAVWQKIDKMFQSARCVVSFLS  681 (685)
Q Consensus       654 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~  681 (685)
                      +++..++...+.+++..++|+.-|+||+
T Consensus       828 ~i~s~l~~~v~q~rdv~G~NlagL~~l~  855 (888)
T KOG0306|consen  828 KIKSKLREIVEQLRDVLGFNLAGLSLLK  855 (888)
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhHHHHHH
Confidence            9999999999999999999999999986

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2e-45  Score=370.32  Aligned_cols=544  Identities=20%  Similarity=0.329  Sum_probs=401.3

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCc--EEEEecCCCcEEEEEecCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP--VLMSASADNSIKMWIFDTT   78 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~--~l~s~s~D~~v~iWd~~~~   78 (685)
                      |++||--++|+|.|. ++|+|+.||.++|||+..+.+.+.++ ||.+.|.++.|.|+-.  .|++|..|+++++||+...
T Consensus       104 He~Pvi~ma~~~~g~-LlAtggaD~~v~VWdi~~~~~th~fk-G~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~  181 (775)
T KOG0319|consen  104 HEAPVITMAFDPTGT-LLATGGADGRVKVWDIKNGYCTHSFK-GHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDK  181 (775)
T ss_pred             cCCCeEEEEEcCCCc-eEEeccccceEEEEEeeCCEEEEEec-CCCceEEEEEeCCccchhheeecCCCceEEEEEcccC
Confidence            899999999999996 99999999999999999999999999 9999999999999765  6899999999999999865


Q ss_pred             CCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhH-----------HHHH--------
Q 005656           79 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV-----------AKRA--------  139 (685)
Q Consensus        79 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-----------~~~~--------  139 (685)
                      .   .++.....|...|+++.|++|+..++++|+|..+.+||+.+.+..+.++....           ..+.        
T Consensus       182 ~---tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~  258 (775)
T KOG0319|consen  182 R---TCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGG  258 (775)
T ss_pred             c---hHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecC
Confidence            3   36778889999999999999999999999999999999976554333321000           0000        


Q ss_pred             ---------------hhcccc-cccc-ccCc---------------e---------------------------------
Q 005656          140 ---------------RKLKMK-EEEL-KLKP---------------V---------------------------------  154 (685)
Q Consensus       140 ---------------~~~~~~-~~~~-~~~~---------------~---------------------------------  154 (685)
                                     .+.... .++. ...+               +                                 
T Consensus       259 ~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~  338 (775)
T KOG0319|consen  259 SGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESH  338 (775)
T ss_pred             CceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccce
Confidence                           000000 0000 0000               0                                 


Q ss_pred             eeee--cccccc---------------------c--CCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEE
Q 005656          155 IAFD--CAEIRE---------------------R--DWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACT  209 (685)
Q Consensus       155 ~~~~--~~~~~~---------------------~--~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~  209 (685)
                      .+.+  ...+|.                     .  .-...+.....+..+++|++++......+.....+|...|.+++
T Consensus       339 laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava  418 (775)
T KOG0319|consen  339 LAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVA  418 (775)
T ss_pred             EEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceee
Confidence            0000  000000                     0  00123445556778899998666555556666678999999999


Q ss_pred             EccCC-CEEEEEecCCcEEEEECCCCcccccccc-ccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceE
Q 005656          210 ISACG-NFAVLGTAGGWIERFNLQSGISRGSYLD-MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLK  287 (685)
Q Consensus       210 ~s~~g-~~l~~g~~dg~i~~~d~~~~~~~~~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~  287 (685)
                      ++..+ .++++++.|+++++|++...+....... ........|...|++++++|+.+.++|||.|.+.++|++....+.
T Consensus       419 ~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~  498 (775)
T KOG0319|consen  419 GSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLL  498 (775)
T ss_pred             ecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEE
Confidence            97755 6889999999999999987322221110 011123489999999999999999999999999999999999999


Q ss_pred             EEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005656          288 SRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL  366 (685)
Q Consensus       288 ~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~  366 (685)
                      .++..| ..+.++.|+|..+.+|+++.|++|+||.+.+..++++|.||...|..+.|-.+|+.|+|++.||-|++|++.+
T Consensus       499 ~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt  578 (775)
T KOG0319|consen  499 GVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKT  578 (775)
T ss_pred             EEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccc
Confidence            998876 8899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEEcCCCcCCCCCCCCCCCCccceeecCCCccCCCCcCCCCCC
Q 005656          367 ARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSS  445 (685)
Q Consensus       367 ~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  445 (685)
                      +.|+.++..|.. |++++.+|.+.+++||+.|+ .|.+|.....                            ++.+++  
T Consensus       579 ~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg-~i~~wkD~Te----------------------------~~~~ee--  627 (775)
T KOG0319|consen  579 NECEMTLDAHNDRVWALSVSPLLDMFVTGGGDG-RIIFWKDVTE----------------------------EEQNEE--  627 (775)
T ss_pred             hhhhhhhhhccceeEEEeecCccceeEecCCCe-EEEEeecCcH----------------------------HHHHHH--
Confidence            999999987766 99999999999999999998 8999952110                            000000  


Q ss_pred             CCCCcCCCCCCCCCCCCCCcCCCCcCceeecCCcHhHHhhccchHHHHhhcCCCCCCCCCCCCCccccCCCCCCCccccC
Q 005656          446 QPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEILFK  525 (685)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~l~~i~~r~k~~~~~~~~~~~pffl~~~~~~~~~~~~~  525 (685)
                       .    +...          +++.            +-|+|-|+=.    +|.-      .+|                 
T Consensus       628 -~----~K~~----------eaie------------q~QeL~n~l~----~~~~------~~A-----------------  653 (775)
T KOG0319|consen  628 -Q----EKRE----------EAIE------------QEQELENLLS----QKRY------TKA-----------------  653 (775)
T ss_pred             -H----HHHH----------HHHH------------HHHHHHHHHh----hhhh------HHH-----------------
Confidence             0    0000          0000            0011211110    0000      000                 


Q ss_pred             CCCCccccccccccCCCCCCCCCccHHHHHHhhccccCC----hHHHHHHHhcCCcchhhhhhccCCCCCCCCcccccCc
Q 005656          526 PSESTKEDTESLKVGNKTKPDIPVSQFIQLLHSCAEMKN----FSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKR  601 (685)
Q Consensus       526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~l~~~~~s~id~~i~~l~~~~~~~~~~~~~~  601 (685)
                                                    +.-+...+.    |..+-...++.+|..++.+|++|..            
T Consensus       654 ------------------------------~~LA~tLd~P~~~f~vi~~~~r~r~~e~l~~av~~L~~------------  691 (775)
T KOG0319|consen  654 ------------------------------FVLALTLDKPHLVFTVINALYRERDPEELGQAVFRLNE------------  691 (775)
T ss_pred             ------------------------------HHhHhhccCchhHHHHHHHHHhcCCcHHHHHHHHHhhh------------
Confidence                                          000000011    1222223456678899999999964            


Q ss_pred             ccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc-cccccchHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhc
Q 005656          602 PEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHG-ETVRCHTKLQDKARKLLEVQSAVWQKIDKMFQSARCVVSFL  680 (685)
Q Consensus       602 ~~~~~~~~~l~~l~~~l~~~~~~e~~~~~l~~~l~~h~-~~l~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  680 (685)
                         +....+|+|...+=...++--.+|..|..+|+.|- +-|.+.|-..+.++.|....++-.+|++++. +...+|.|.
T Consensus       692 ---dq~~~Ll~~~~~WnTnsk~c~vaQ~vL~~~l~~~~p~el~~~~g~~~~~e~l~PYtqRHf~Rid~~~-~~~~lLdf~  767 (775)
T KOG0319|consen  692 ---DQPEALLQFVVKWNTNSKTCHVAQRVLYEILKRVDPEELVRWPGSGEVVEALLPYTQRHFRRIDRLV-QDSALLDFT  767 (775)
T ss_pred             ---hhHHHHHHHHHHhcCCcchhHHHHHHHHHHHhccChHHhhcccchHHHHHhhhhHHHHHHHHHHHHh-hhhHHHHHh
Confidence               55778999998888877888899999999999874 3467788889999999999999999999984 445666664

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.1e-46  Score=353.20  Aligned_cols=280  Identities=20%  Similarity=0.348  Sum_probs=262.6

Q ss_pred             CCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCC--CcEEEEecCCCcEEEEEecCCC
Q 005656            2 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN--EPVLMSASADNSIKMWIFDTTD   79 (685)
Q Consensus         2 ~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~--~~~l~s~s~D~~v~iWd~~~~~   79 (685)
                      +.||..+.||+|+. .||||+.+|.++||+..+...+.++. +|.+.|.++.|+|.  +..||||+.||++++|+++.. 
T Consensus       175 ~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~~l~-gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e-  251 (459)
T KOG0272|consen  175 TRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQTLR-GHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE-  251 (459)
T ss_pred             CCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeEEEe-ccccceeeEEEccCCCccceeeeccCCceeeeccCCC-
Confidence            46899999999999 99999999999999999999999998 99999999999997  569999999999999999887 


Q ss_pred             CCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeec
Q 005656           80 GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC  159 (685)
Q Consensus        80 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (685)
                         .++..+.+|...|..++|+|+|++|+|++.|.+-++||+.++...-..                             
T Consensus       252 ---~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~Q-----------------------------  299 (459)
T KOG0272|consen  252 ---TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQ-----------------------------  299 (459)
T ss_pred             ---cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhh-----------------------------
Confidence               778888999999999999999999999999999999999887643222                             


Q ss_pred             ccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccc
Q 005656          160 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGS  239 (685)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~  239 (685)
                                                             .+|...|.+++|.++|..+++|+.|..-++||+++|..+..
T Consensus       300 ---------------------------------------EGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~  340 (459)
T KOG0272|consen  300 ---------------------------------------EGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMF  340 (459)
T ss_pred             ---------------------------------------cccccccceeEecCCCceeeccCccchhheeecccCcEEEE
Confidence                                                   18889999999999999999999999999999999999987


Q ss_pred             cccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEee-cCCEEEEEeCCCeE
Q 005656          240 YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHR-VNGLLATVADDLVI  317 (685)
Q Consensus       240 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~-~~~~l~~~~~dg~I  317 (685)
                      +.        +|..+|.+++|+|+|..++|||.|++++|||++..+.+.++..+ .-|+.+.|+| .|.+|++++.|+++
T Consensus       341 L~--------gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~  412 (459)
T KOG0272|consen  341 LA--------GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTV  412 (459)
T ss_pred             ec--------ccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcce
Confidence            76        99999999999999999999999999999999998888888766 7789999999 67799999999999


Q ss_pred             EEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005656          318 RLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD  363 (685)
Q Consensus       318 ~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd  363 (685)
                      +||...++.+++++.||.+.|.++.++||+.+++|++.|.++++|.
T Consensus       413 kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  413 KIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             eeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            9999999999999999999999999999999999999999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-45  Score=344.54  Aligned_cols=314  Identities=22%  Similarity=0.362  Sum_probs=250.2

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeC-----CCcEEEEecCCCcEEEEEe
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-----NEPVLMSASADNSIKMWIF   75 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp-----~~~~l~s~s~D~~v~iWd~   75 (685)
                      |+..|.|++|+|||+ .||+|+.||+|++||.++++++..-..+|...|++++|.|     ..++||+++.||+|+|||+
T Consensus       156 H~~WVlcvawsPDgk-~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~  234 (480)
T KOG0271|consen  156 HKNWVLCVAWSPDGK-KIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDT  234 (480)
T ss_pred             CccEEEEEEECCCcc-hhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEc
Confidence            788999999999999 9999999999999999998877665559999999999976     5679999999999999999


Q ss_pred             cCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCcee
Q 005656           76 DTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI  155 (685)
Q Consensus        76 ~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (685)
                      ..+    +++..+.||..+|+|++|-.+| ++++++.|++|++|+...+...+++.....                    
T Consensus       235 ~~~----~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHah--------------------  289 (480)
T KOG0271|consen  235 KLG----TCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAH--------------------  289 (480)
T ss_pred             cCc----eEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccch--------------------
Confidence            887    8899999999999999998666 899999999999999998887766643211                    


Q ss_pred             eeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCC-C--CCeEEEEEccCCCEEEEEecCCcEEEEECC
Q 005656          156 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN-P--TAVKACTISACGNFAVLGTAGGWIERFNLQ  232 (685)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~--~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~  232 (685)
                                 |.+-+.+..+- .+++   ...........+.... .  -.-...+.-..+..+++|+.|+++.+|+..
T Consensus       290 -----------wvN~lalsTdy-~LRt---gaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~  354 (480)
T KOG0271|consen  290 -----------WVNHLALSTDY-VLRT---GAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPF  354 (480)
T ss_pred             -----------heeeeeccchh-hhhc---cccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccc
Confidence                       11111111000 0000   0000000000000000 0  000001111234679999999999999976


Q ss_pred             CCc-cccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEE
Q 005656          233 SGI-SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLAT  310 (685)
Q Consensus       233 ~~~-~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~  310 (685)
                      ... ++...        .+|..-|+.+.|+||++++++++.|..|++||-++|+.+.++..+ .+|..++|+.|.++|++
T Consensus       355 ~~kkpi~rm--------tgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS  426 (480)
T KOG0271|consen  355 KSKKPITRM--------TGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVS  426 (480)
T ss_pred             ccccchhhh--------hchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEE
Confidence            544 33333        299999999999999999999999999999999999999999966 99999999999999999


Q ss_pred             EeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005656          311 VADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD  363 (685)
Q Consensus       311 ~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd  363 (685)
                      |+.|.++++||+++.+....+.||...|.++.|+|||..+++|+.|..+++|.
T Consensus       427 ~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  427 GSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             cCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            99999999999999999999999999999999999999999999999999995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.8e-44  Score=339.94  Aligned_cols=281  Identities=17%  Similarity=0.287  Sum_probs=262.3

Q ss_pred             ccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecC--CCEEEEEeCCCceEEEEe
Q 005656           44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--GRHILSAGQDRAFRLFSV  121 (685)
Q Consensus        44 ~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~--~~~l~s~s~dg~i~vwd~  121 (685)
                      +-+.+|..+.|++|+..|+|||-+|.+++|+....    ..+..+.||...|.++.|+|.  +..++||+.||++++|++
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~----~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~  248 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC----NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKL  248 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCCc----ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeecc
Confidence            67789999999999999999999999999988766    677888999999999999996  678999999999999999


Q ss_pred             ecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCC
Q 005656          122 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN  201 (685)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  201 (685)
                      .+......+.                                                                    +|
T Consensus       249 ~~e~~l~~l~--------------------------------------------------------------------gH  260 (459)
T KOG0272|consen  249 SQETPLQDLE--------------------------------------------------------------------GH  260 (459)
T ss_pred             CCCcchhhhh--------------------------------------------------------------------cc
Confidence            8765544443                                                                    78


Q ss_pred             CCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005656          202 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF  281 (685)
Q Consensus       202 ~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~  281 (685)
                      ...|..++|+|+|++|++++.|.+-++||+.++.......        +|...|.+++|.++|..++|||.|..-+|||+
T Consensus       261 ~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QE--------GHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDl  332 (459)
T KOG0272|consen  261 LARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQE--------GHSKGVFSIAFQPDGSLAATGGLDSLGRVWDL  332 (459)
T ss_pred             hhhheeeeecCCCceeeecccccchhhcccccchhhHhhc--------ccccccceeEecCCCceeeccCccchhheeec
Confidence            8899999999999999999999999999999998776554        99999999999999999999999999999999


Q ss_pred             CCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcE
Q 005656          282 KGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE-DGKWLLSSGMDGSL  359 (685)
Q Consensus       282 ~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp-dg~~l~s~s~Dg~I  359 (685)
                      ++++.+..+..+ .+|..+.|+|+|..||+|+.|++++|||++..+.+.++.+|.+-|+.+.|+| .|.+|+|+|.|+++
T Consensus       333 Rtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~  412 (459)
T KOG0272|consen  333 RTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTV  412 (459)
T ss_pred             ccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcce
Confidence            999999988876 8999999999999999999999999999999999999999999999999999 78899999999999


Q ss_pred             EEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656          360 RIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       360 ~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~  405 (685)
                      +||.-.++.++..+.+|.. |.++..+||+.++++++.|. ++++|.
T Consensus       413 kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DR-T~KLW~  458 (459)
T KOG0272|consen  413 KIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDR-TIKLWR  458 (459)
T ss_pred             eeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCc-eeeecc
Confidence            9999999999999998877 99999999999999999996 999995

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.8e-42  Score=312.77  Aligned_cols=284  Identities=19%  Similarity=0.356  Sum_probs=266.5

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCC--
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT--   78 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~--   78 (685)
                      |.+.|.++.|++|++ .+++++.||.+.|||.-+....+.+. -....|..++|+|.|+++|+|+-|+...||++.+.  
T Consensus        54 H~~Ki~~~~ws~Dsr-~ivSaSqDGklIvWDs~TtnK~haip-l~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~  131 (343)
T KOG0286|consen   54 HLNKIYAMDWSTDSR-RIVSASQDGKLIVWDSFTTNKVHAIP-LPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDA  131 (343)
T ss_pred             cccceeeeEecCCcC-eEEeeccCCeEEEEEcccccceeEEe-cCceeEEEEEECCCCCeEEecCcCceeEEEecccccc
Confidence            788999999999999 99999999999999998887777776 67889999999999999999999999999999876  


Q ss_pred             CCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeee
Q 005656           79 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD  158 (685)
Q Consensus        79 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (685)
                      ++..+..+.+.+|.+-+.|+.|.+| .+|++++.|.+..+||+++++....+.                           
T Consensus       132 ~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~---------------------------  183 (343)
T KOG0286|consen  132 EGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFH---------------------------  183 (343)
T ss_pred             cccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEec---------------------------
Confidence            4555677788999999999999875 489999999999999999999887775                           


Q ss_pred             cccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEcc-CCCEEEEEecCCcEEEEECCCCccc
Q 005656          159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQSGISR  237 (685)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~~~d~~~~~~~  237 (685)
                                                               +|.+.|.+++++| +++.+++|+.|+..++||++++..+
T Consensus       184 -----------------------------------------GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~  222 (343)
T KOG0286|consen  184 -----------------------------------------GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCV  222 (343)
T ss_pred             -----------------------------------------CCcccEEEEecCCCCCCeEEecccccceeeeeccCccee
Confidence                                                     8899999999999 9999999999999999999999999


Q ss_pred             cccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC---CceeEEEEeecCCEEEEEeCC
Q 005656          238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVADD  314 (685)
Q Consensus       238 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~d  314 (685)
                      +.|.        +|...|+++.|.|+|.-+++|+.|++.++||++..+.+..+.+.   .+|++++|+..|++|++|..|
T Consensus       223 qtF~--------ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d  294 (343)
T KOG0286|consen  223 QTFE--------GHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDD  294 (343)
T ss_pred             Eeec--------ccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecC
Confidence            9887        99999999999999999999999999999999999988888765   789999999999999999999


Q ss_pred             CeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005656          315 LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD  363 (685)
Q Consensus       315 g~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd  363 (685)
                      .++.+||.-.++.+..+.||.++|+++..+|||.-|++||.|.++|||.
T Consensus       295 ~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  295 FTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             CceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            9999999999999999999999999999999999999999999999994

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.1e-40  Score=319.53  Aligned_cols=324  Identities=21%  Similarity=0.342  Sum_probs=279.3

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCC--e--eeEEee---------cccccCeeEEEEeCCCcEEEEecCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR--R--LQSVIR---------EAHDNAIISLHFFANEPVLMSASAD   67 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~--~--~~~~~~---------~~h~~~V~~l~~sp~~~~l~s~s~D   67 (685)
                      |+.+|.+.+|+|-...++|+|+.|-..++|++...  .  ....++         ...+..|++++|+.+|..||+|+.|
T Consensus       177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~  256 (524)
T KOG0273|consen  177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSED  256 (524)
T ss_pred             CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecC
Confidence            78899999999976668999999999999998751  1  111111         1123679999999999999999999


Q ss_pred             CcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccccc
Q 005656           68 NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEE  147 (685)
Q Consensus        68 ~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (685)
                      |.+++|+.+.     .++.++..|.+||.++.|+..|.||++++.||++.+||..++.....+.                
T Consensus       257 G~~riw~~~G-----~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~----------------  315 (524)
T KOG0273|consen  257 GEARIWNKDG-----NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFE----------------  315 (524)
T ss_pred             cEEEEEecCc-----hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeee----------------
Confidence            9999998664     5678888999999999999999999999999999999998887766553                


Q ss_pred             ccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEE
Q 005656          148 ELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIE  227 (685)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~  227 (685)
                                                                          .+..+...+.|-. ...+++.+.||.|+
T Consensus       316 ----------------------------------------------------~~s~~~lDVdW~~-~~~F~ts~td~~i~  342 (524)
T KOG0273|consen  316 ----------------------------------------------------FHSAPALDVDWQS-NDEFATSSTDGCIH  342 (524)
T ss_pred             ----------------------------------------------------eccCCccceEEec-CceEeecCCCceEE
Confidence                                                                2233334445543 34578888999999


Q ss_pred             EEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecC-
Q 005656          228 RFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVN-  305 (685)
Q Consensus       228 ~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~-  305 (685)
                      ++.+....+..++.        +|.+.|.++.|+|.|.+|++++.|++++||+.........+..+ ..|..+.|+|.| 
T Consensus       343 V~kv~~~~P~~t~~--------GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~  414 (524)
T KOG0273|consen  343 VCKVGEDRPVKTFI--------GHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGP  414 (524)
T ss_pred             EEEecCCCcceeee--------cccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCC
Confidence            99999888888876        89999999999999999999999999999998877766666544 688999999864 


Q ss_pred             --------CEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeecc
Q 005656          306 --------GLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV  377 (685)
Q Consensus       306 --------~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~  377 (685)
                              ..+++++.|++|++||+..+.++.+|..|..+|.+++|||+|+|+|+|+.||.|.+|+++++++++.+....
T Consensus       415 v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~  494 (524)
T KOG0273|consen  415 VTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG  494 (524)
T ss_pred             ccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC
Confidence                    489999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          378 SITALSLSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       378 ~v~~v~~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                      .|..++|+-+|..|..+-.|+ .+++-+.+
T Consensus       495 ~Ifel~Wn~~G~kl~~~~sd~-~vcvldlr  523 (524)
T KOG0273|consen  495 GIFELCWNAAGDKLGACASDG-SVCVLDLR  523 (524)
T ss_pred             eEEEEEEcCCCCEEEEEecCC-CceEEEec
Confidence            999999999999999999897 88887754

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=7.9e-40  Score=288.87  Aligned_cols=292  Identities=15%  Similarity=0.324  Sum_probs=256.1

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCC
Q 005656           13 DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHS   92 (685)
Q Consensus        13 dg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~   92 (685)
                      |..-+||++++|.+|++|...+|.+..+++ ..++.|+.+...|+++.||+++. ..||+||+++...  .++.++.+|.
T Consensus         8 d~~viLvsA~YDhTIRfWqa~tG~C~rTiq-h~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np--~Pv~t~e~h~   83 (311)
T KOG0315|consen    8 DDPVILVSAGYDHTIRFWQALTGICSRTIQ-HPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNP--NPVATFEGHT   83 (311)
T ss_pred             CCceEEEeccCcceeeeeehhcCeEEEEEe-cCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCC--CceeEEeccC
Confidence            334589999999999999999999999998 66789999999999999998875 5899999987654  4778889999


Q ss_pred             CCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEE
Q 005656           93 APPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVT  172 (685)
Q Consensus        93 ~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (685)
                      ..|+++.|..+|+++++||.||+++|||++...+.+.+                                          
T Consensus        84 kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~------------------------------------------  121 (311)
T KOG0315|consen   84 KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY------------------------------------------  121 (311)
T ss_pred             CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhc------------------------------------------
Confidence            99999999999999999999999999999875544443                                          


Q ss_pred             EEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCC
Q 005656          173 CHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHN  252 (685)
Q Consensus       173 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~  252 (685)
                                                 .+..+|.++..+|+...|++|..+|.|++||+....+...+..       ...
T Consensus       122 ---------------------------~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liP-------e~~  167 (311)
T KOG0315|consen  122 ---------------------------QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIP-------EDD  167 (311)
T ss_pred             ---------------------------cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCC-------CCC
Confidence                                       4578999999999999999999999999999999877766542       455


Q ss_pred             cCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc------eEEEeec-CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCC
Q 005656          253 GEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD------LKSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL  325 (685)
Q Consensus       253 ~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~------~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~  325 (685)
                      ..|.++.+.|+|.+++.+...|..++|++-+..      ++.++.. .+.+..+.+||++++||+++.|.+++||+.++.
T Consensus       168 ~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~  247 (311)
T KOG0315|consen  168 TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF  247 (311)
T ss_pred             cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence            789999999999999999999999999987653      3333433 478999999999999999999999999999988


Q ss_pred             -eeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccc-eEEEEE
Q 005656          326 -RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSL  384 (685)
Q Consensus       326 -~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~  384 (685)
                       +.-..+.+|...+.+++||.||+||++|+.|+++++|++..++.+..+.+|.. ..|++.
T Consensus       248 ~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~l  308 (311)
T KOG0315|consen  248 FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVAL  308 (311)
T ss_pred             eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEe
Confidence             77778899999999999999999999999999999999999999998876544 666654

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.7e-38  Score=308.38  Aligned_cols=373  Identities=15%  Similarity=0.238  Sum_probs=296.3

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG   80 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~   80 (685)
                      |...|++++|-|.....++||+.|++|.+|+-...+...+++ .|..-|+|+.|+|||.+++|++.||++.+||=.++  
T Consensus       146 hSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r-~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktg--  222 (603)
T KOG0318|consen  146 HSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFR-EHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTG--  222 (603)
T ss_pred             cceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeeccc-ccccceeeEEECCCCCeEEEecCCccEEEEcCCCc--
Confidence            677899999999998899999999999999988888888888 89999999999999999999999999999986666  


Q ss_pred             CCceeEecc---cCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeee
Q 005656           81 DPRLLRFRS---GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF  157 (685)
Q Consensus        81 ~~~~~~~~~---~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (685)
                        ..+..+.   +|.+.|.+++|+||+..+++++.|.++++||+.+.+..+++.......          ..        
T Consensus       223 --e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~----------dq--------  282 (603)
T KOG0318|consen  223 --EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVE----------DQ--------  282 (603)
T ss_pred             --cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchh----------ce--------
Confidence              4455554   899999999999999999999999999999999999888875432100          00        


Q ss_pred             ecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccc
Q 005656          158 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR  237 (685)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~  237 (685)
                      ....+..  .+.+++ -.-++.+..++.....    .+....+|...|++++.+++++++++|+.||.|.-|+..+|..-
T Consensus       283 qvG~lWq--kd~lIt-VSl~G~in~ln~~d~~----~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~  355 (603)
T KOG0318|consen  283 QVGCLWQ--KDHLIT-VSLSGTINYLNPSDPS----VLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD  355 (603)
T ss_pred             EEEEEEe--CCeEEE-EEcCcEEEEecccCCC----hhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc
Confidence            0000000  111222 2233455555555443    33444589999999999999999999999999999999998776


Q ss_pred             cccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc------------eE------------------
Q 005656          238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD------------LK------------------  287 (685)
Q Consensus       238 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~------------~~------------------  287 (685)
                      .....       .|...|.+++.+..+ .+++++.|.++++.++....            +.                  
T Consensus       356 ~~~g~-------~h~nqI~~~~~~~~~-~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~  427 (603)
T KOG0318|consen  356 RLAGK-------GHTNQIKGMAASESG-ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISD  427 (603)
T ss_pred             ccccc-------cccceEEEEeecCCC-cEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCc
Confidence            55432       899999999987654 48889999999999774321            00                  


Q ss_pred             ----------EEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCee--EEEEecCCCCeEEEEEcCCCCEEEEEeC
Q 005656          288 ----------SRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM--VRKFEGHTDRITDFCFSEDGKWLLSSGM  355 (685)
Q Consensus       288 ----------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~--~~~~~~h~~~I~~l~~spdg~~l~s~s~  355 (685)
                                ..........+++++|++..+++|+.|+.|+||.+..+..  ......|.++|++++||||+.|||+|..
T Consensus       428 iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da  507 (603)
T KOG0318|consen  428 IVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDA  507 (603)
T ss_pred             EEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEecc
Confidence                      0111124467889999999999999999999999987653  3345679999999999999999999999


Q ss_pred             CCcEEEEEcCCCceee-EEe-eccceEEEEEcCCCCeEEEEEeCCCeEEEEEcCCCcCC
Q 005656          356 DGSLRIWDVILARQID-AIH-VDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSG  412 (685)
Q Consensus       356 Dg~I~iwd~~~~~~i~-~~~-~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~~~~~  412 (685)
                      .+.|.+||+.+.+... .+. +...|.+++|+|+..++|+|+.|- .|.||+....-..
T Consensus       508 ~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt-~Viiysv~kP~~~  565 (603)
T KOG0318|consen  508 SRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDT-NVIIYSVKKPAKH  565 (603)
T ss_pred             CCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccc-eEEEEEccChhhh
Confidence            9999999999887632 233 445599999999999999999996 8999997765544

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-39  Score=292.14  Aligned_cols=284  Identities=20%  Similarity=0.308  Sum_probs=251.1

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCC-----CeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEe
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEK-----RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF   75 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~-----~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~   75 (685)
                      |++.|+.++..+.+..++++++.|..|.+|++..     |..++.+. ||...|..+..++||++.++++.|+++++||+
T Consensus        14 h~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~-GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl   92 (315)
T KOG0279|consen   14 HTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLT-GHSHFVSDVVLSSDGNFALSASWDGTLRLWDL   92 (315)
T ss_pred             CCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeee-ccceEecceEEccCCceEEeccccceEEEEEe
Confidence            8899999999999877999999999999998764     66788888 89999999999999999999999999999999


Q ss_pred             cCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCcee
Q 005656           76 DTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI  155 (685)
Q Consensus        76 ~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (685)
                      .++    +..+.+.||...|.+++|++|.+.+++|+.|.+|++|++..+.......                        
T Consensus        93 ~~g----~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~------------------------  144 (315)
T KOG0279|consen   93 ATG----ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHE------------------------  144 (315)
T ss_pred             cCC----cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEec------------------------
Confidence            987    6667778999999999999999999999999999999986554322211                        


Q ss_pred             eeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccC--CCEEEEEecCCcEEEEECCC
Q 005656          156 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC--GNFAVLGTAGGWIERFNLQS  233 (685)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--g~~l~~g~~dg~i~~~d~~~  233 (685)
                                                                 ..+...|.|+.|+|+  ..+++.++.|+.|++||+++
T Consensus       145 -------------------------------------------~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~  181 (315)
T KOG0279|consen  145 -------------------------------------------DSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN  181 (315)
T ss_pred             -------------------------------------------CCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC
Confidence                                                       023678999999998  68899999999999999999


Q ss_pred             CccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeC
Q 005656          234 GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVAD  313 (685)
Q Consensus       234 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  313 (685)
                      .+....+.        +|++.++.++++|||..+++|+.||.+.+||++.++.+..+.+...|.+++|+|+.-.|+.+. 
T Consensus       182 ~~l~~~~~--------gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at-  252 (315)
T KOG0279|consen  182 CQLRTTFI--------GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAAT-  252 (315)
T ss_pred             cchhhccc--------cccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeecc-
Confidence            99988876        999999999999999999999999999999999999999999999999999999776666554 


Q ss_pred             CCeEEEEEcCCCeeEEEEec----C-----CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005656          314 DLVIRLFDVVALRMVRKFEG----H-----TDRITDFCFSEDGKWLLSSGMDGSLRIWDVI  365 (685)
Q Consensus       314 dg~I~i~d~~~~~~~~~~~~----h-----~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~  365 (685)
                      +..|+|||+.++.++..++.    .     .-....++||+||..|++|-.|+.|++|.+.
T Consensus       253 ~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  253 ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence            45699999999988776652    2     2235678999999999999999999999875

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.7e-39  Score=323.97  Aligned_cols=321  Identities=20%  Similarity=0.395  Sum_probs=281.5

Q ss_pred             CcEEEEEEccCCCCEEEEEeCC-CcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCC
Q 005656            3 GAVTALAFSSDGQPLLASGASS-GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD   81 (685)
Q Consensus         3 ~~V~~l~fspdg~~~latg~~d-g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~   81 (685)
                      .+|..++|+..|. +||.|+.. |.+.||++.+...+...+ +|...+++++++|||+++|||+.||.|+|||...+   
T Consensus       308 ~~I~t~~~N~tGD-WiA~g~~klgQLlVweWqsEsYVlKQQ-gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg---  382 (893)
T KOG0291|consen  308 QKILTVSFNSTGD-WIAFGCSKLGQLLVWEWQSESYVLKQQ-GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG---  382 (893)
T ss_pred             ceeeEEEecccCC-EEEEcCCccceEEEEEeeccceeeecc-ccccceeeEEECCCCcEEEeccCCCcEEEEeccCc---
Confidence            5789999999999 88888754 899999999998888887 99999999999999999999999999999998877   


Q ss_pred             CceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccc
Q 005656           82 PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE  161 (685)
Q Consensus        82 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (685)
                       -++.++..|+..|+.+.|+..|+.+++++-||+||.||+...+..+++..                             
T Consensus       383 -fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~-----------------------------  432 (893)
T KOG0291|consen  383 -FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS-----------------------------  432 (893)
T ss_pred             -eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecC-----------------------------
Confidence             78999999999999999999999999999999999999988877666642                             


Q ss_pred             ccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCC-cEEEEECCCCcccccc
Q 005656          162 IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG-WIERFNLQSGISRGSY  240 (685)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg-~i~~~d~~~~~~~~~~  240 (685)
                                                            +.+....|++..|.|..+.+|+.|. .|++|++++|+....+
T Consensus       433 --------------------------------------P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiL  474 (893)
T KOG0291|consen  433 --------------------------------------PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDIL  474 (893)
T ss_pred             --------------------------------------CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehh
Confidence                                                  3355678999999999999999886 7999999999998877


Q ss_pred             ccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCC-CceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEE
Q 005656          241 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG-RDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRL  319 (685)
Q Consensus       241 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i  319 (685)
                      .        +|.++|.+++|+|.+..|+++|+|.+|++||+-. ...+.++.....+..++|+|+|+.||+++-||.|.+
T Consensus       475 s--------GHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf  546 (893)
T KOG0291|consen  475 S--------GHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITF  546 (893)
T ss_pred             c--------CCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEE
Confidence            5        9999999999999999999999999999999864 356677888899999999999999999999999999


Q ss_pred             EEcCCCeeEEEEec--------------------CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEee----
Q 005656          320 FDVVALRMVRKFEG--------------------HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV----  375 (685)
Q Consensus       320 ~d~~~~~~~~~~~~--------------------h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~----  375 (685)
                      ||+..+..+..+.|                    .....+.+++|+||.++++|+..+.|++|+++++-+++.+..    
T Consensus       547 ~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~  626 (893)
T KOG0291|consen  547 FDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNR  626 (893)
T ss_pred             EEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEecccc
Confidence            99987766644432                    224689999999999999999999999999988866554432    


Q ss_pred             -----------------------------------------------------ccceEEEEEcCCCCeEEEEEeCCCeEE
Q 005656          376 -----------------------------------------------------DVSITALSLSPNMDVLATAHVDQNGVY  402 (685)
Q Consensus       376 -----------------------------------------------------~~~v~~v~~spdg~~Lat~~~d~~~I~  402 (685)
                                                                           .-.|+++.|||+|+-+|+++..|  |.
T Consensus       627 sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAaatTEG--l~  704 (893)
T KOG0291|consen  627 SLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAAATTEG--LL  704 (893)
T ss_pred             chhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECCCcCeeeeecccc--eE
Confidence                                                                 01278999999999999999884  77


Q ss_pred             EEEc
Q 005656          403 LWVN  406 (685)
Q Consensus       403 lW~~  406 (685)
                      ||..
T Consensus       705 IYsl  708 (893)
T KOG0291|consen  705 IYSL  708 (893)
T ss_pred             EEec
Confidence            7764

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=6.8e-39  Score=287.97  Aligned_cols=293  Identities=21%  Similarity=0.309  Sum_probs=254.3

Q ss_pred             eeeEEeecccccCeeEEEEeCCC-cEEEEecCCCcEEEEEecCCCCC-CceeEecccCCCCCeEEEEecCCCEEEEEeCC
Q 005656           36 RLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGD-PRLLRFRSGHSAPPLCIRFYANGRHILSAGQD  113 (685)
Q Consensus        36 ~~~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d  113 (685)
                      ....++. +|++.|+.++..+.+ ..+++++.|.++.+|++...+.. ...++.+.||...|..+..++||++.++++.|
T Consensus         6 ~l~~tl~-gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD   84 (315)
T KOG0279|consen    6 VLRGTLE-GHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD   84 (315)
T ss_pred             eeeeeec-CCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecccc
Confidence            3455666 999999999999974 58999999999999999776432 35678889999999999999999999999999


Q ss_pred             CceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCce
Q 005656          114 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH  193 (685)
Q Consensus       114 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  193 (685)
                      +++++||+.+++..+.+.                                                              
T Consensus        85 ~~lrlWDl~~g~~t~~f~--------------------------------------------------------------  102 (315)
T KOG0279|consen   85 GTLRLWDLATGESTRRFV--------------------------------------------------------------  102 (315)
T ss_pred             ceEEEEEecCCcEEEEEE--------------------------------------------------------------
Confidence            999999999987666654                                                              


Q ss_pred             eecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCC--CCEEEEEE
Q 005656          194 ILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST--NTLMISAG  271 (685)
Q Consensus       194 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~s  271 (685)
                            +|...|.+++|+++.+.+++|+.|.+|.+||+..+.......       ..|.+.|+|+.|+|+  +.+|++++
T Consensus       103 ------GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~-------~~~~~WVscvrfsP~~~~p~Ivs~s  169 (315)
T KOG0279|consen  103 ------GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHE-------DSHREWVSCVRFSPNESNPIIVSAS  169 (315)
T ss_pred             ------ecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEec-------CCCcCcEEEEEEcCCCCCcEEEEcc
Confidence                  788999999999999999999999999999998765543322       144889999999998  67999999


Q ss_pred             CCCeEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEE
Q 005656          272 YHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWL  350 (685)
Q Consensus       272 ~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l  350 (685)
                      .|++|++||+++.++...+..+ +.++.++++|||.++++|+.||.+.+||++.++.+..+. |...|.+++|+|+.-+|
T Consensus       170 ~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL  248 (315)
T KOG0279|consen  170 WDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWL  248 (315)
T ss_pred             CCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeE
Confidence            9999999999999988877665 889999999999999999999999999999999988876 88999999999987777


Q ss_pred             EEEeCCCcEEEEEcCCCceeeEEeec---------cc-eEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          351 LSSGMDGSLRIWDVILARQIDAIHVD---------VS-ITALSLSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       351 ~s~s~Dg~I~iwd~~~~~~i~~~~~~---------~~-v~~v~~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                      +.+.. ..|+|||+.++.++..++..         .+ ..+++||+||..|+.+-.|+ .|++|...
T Consensus       249 ~~at~-~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~-~irv~qv~  313 (315)
T KOG0279|consen  249 CAATA-TSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDN-VIRVWQVA  313 (315)
T ss_pred             eeccC-CceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCC-cEEEEEee
Confidence            76654 45999999999988877531         22 78899999999999999997 99999753

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.6e-40  Score=304.28  Aligned_cols=282  Identities=24%  Similarity=0.397  Sum_probs=259.1

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG   80 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~   80 (685)
                      |+.+|+.+-|+|+-. ++++++.|++|++||..++++...++ ||.+.|..++|+..|++|++++.|-.+++||++..  
T Consensus       107 ~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~~Lr-GHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~--  182 (406)
T KOG0295|consen  107 HRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELERSLR-GHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF--  182 (406)
T ss_pred             cccceeeeeeccCce-EEEEecCCceEEEEEccchhhhhhhh-ccccceeEEEEecCccEEEecCCccchhheeHHHH--
Confidence            678899999999987 99999999999999999999999999 99999999999999999999999999999998764  


Q ss_pred             CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656           81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  160 (685)
Q Consensus        81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (685)
                       .++++...+|...|.++.|-|.|.++++++.|.+|+.|++.++.+.+.+.                             
T Consensus       183 -~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~-----------------------------  232 (406)
T KOG0295|consen  183 -FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFP-----------------------------  232 (406)
T ss_pred             -HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEecc-----------------------------
Confidence             37788889999999999999999999999999999999998776655442                             


Q ss_pred             cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656          161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  240 (685)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~  240 (685)
                                                                                                      
T Consensus       233 --------------------------------------------------------------------------------  232 (406)
T KOG0295|consen  233 --------------------------------------------------------------------------------  232 (406)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec-CCceeEEEEeec---------------
Q 005656          241 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV-GCSLVKIVYHRV---------------  304 (685)
Q Consensus       241 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~i~~~~~~~~---------------  304 (685)
                               +|...|..+..+.||..+++++.|.+|++|-+.++++...+.. ..++.+++|.|.               
T Consensus       233 ---------~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~  303 (406)
T KOG0295|consen  233 ---------GHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNG  303 (406)
T ss_pred             ---------CchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCC
Confidence                     7888999999999999999999999999999999977766654 478889888773               


Q ss_pred             CCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccc-eEEEE
Q 005656          305 NGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALS  383 (685)
Q Consensus       305 ~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~  383 (685)
                      +.++.+++.|++|++||+.++.++.++.||.+.|.+++|+|.|+||+++.+|+++++||+.++++...+..+.. |+++.
T Consensus       304 ~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lD  383 (406)
T KOG0295|consen  304 GQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLD  383 (406)
T ss_pred             ccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEe
Confidence            25999999999999999999999999999999999999999999999999999999999999999999987666 99999


Q ss_pred             EcCCCCeEEEEEeCCCeEEEEEc
Q 005656          384 LSPNMDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       384 ~spdg~~Lat~~~d~~~I~lW~~  406 (685)
                      |+.+..++++|+.|. .+++|..
T Consensus       384 fh~~~p~VvTGsVdq-t~KvwEc  405 (406)
T KOG0295|consen  384 FHKTAPYVVTGSVDQ-TVKVWEC  405 (406)
T ss_pred             cCCCCceEEeccccc-eeeeeec
Confidence            999999999999998 9999963

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.2e-38  Score=287.92  Aligned_cols=291  Identities=18%  Similarity=0.334  Sum_probs=257.4

Q ss_pred             eEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceE
Q 005656           38 QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFR  117 (685)
Q Consensus        38 ~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~  117 (685)
                      .++++ ||.+.|.++.|++|+++|+++|.||.+.|||.-+.    .....+.-....|..++|+|.|++++.|+-|+...
T Consensus        48 rr~Lk-GH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Tt----nK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Cs  122 (343)
T KOG0286|consen   48 RRTLK-GHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTT----NKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCS  122 (343)
T ss_pred             EEEec-ccccceeeeEecCCcCeEEeeccCCeEEEEEcccc----cceeEEecCceeEEEEEECCCCCeEEecCcCceeE
Confidence            36677 99999999999999999999999999999998776    33444556678899999999999999999999999


Q ss_pred             EEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecC
Q 005656          118 LFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRP  197 (685)
Q Consensus       118 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  197 (685)
                      ||++.+.......                                                              ...+.
T Consensus       123 iy~ls~~d~~g~~--------------------------------------------------------------~v~r~  140 (343)
T KOG0286|consen  123 IYPLSTRDAEGNV--------------------------------------------------------------RVSRE  140 (343)
T ss_pred             EEecccccccccc--------------------------------------------------------------eeeee
Confidence            9998744211110                                                              01111


Q ss_pred             CCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcC-CCCEEEEEECCCeE
Q 005656          198 CPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYHGDI  276 (685)
Q Consensus       198 ~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~dg~i  276 (685)
                      ..+|.+.+.|+.|.+ .+.+++|+.|.++.+||+.+|+....|.        +|.+.|.+++++| +++.+++|+-|+..
T Consensus       141 l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~--------GH~gDV~slsl~p~~~ntFvSg~cD~~a  211 (343)
T KOG0286|consen  141 LAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFH--------GHTGDVMSLSLSPSDGNTFVSGGCDKSA  211 (343)
T ss_pred             ecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEec--------CCcccEEEEecCCCCCCeEEecccccce
Confidence            228889999999988 6779999999999999999999998886        9999999999999 89999999999999


Q ss_pred             EEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEec--CCCCeEEEEEcCCCCEEEEE
Q 005656          277 KVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG--HTDRITDFCFSEDGKWLLSS  353 (685)
Q Consensus       277 ~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~--h~~~I~~l~~spdg~~l~s~  353 (685)
                      ++||++.+..++++..+ +.|+.+.|.|+|.-+++|++|++.++||++..+.+..+..  ...+|++++||..|++|++|
T Consensus       212 klWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfag  291 (343)
T KOG0286|consen  212 KLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAG  291 (343)
T ss_pred             eeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEee
Confidence            99999999999999876 8899999999999999999999999999999988888863  34579999999999999999


Q ss_pred             eCCCcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656          354 GMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       354 s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~  405 (685)
                      ..|.++.+||.-.++.+..+.+|.. |+++..+|||..+++|+-|. .++||.
T Consensus       292 y~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs-~lriW~  343 (343)
T KOG0286|consen  292 YDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDS-TLRIWA  343 (343)
T ss_pred             ecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhH-heeecC
Confidence            9999999999999999999987776 99999999999999999998 999994

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=3.5e-37  Score=299.28  Aligned_cols=366  Identities=19%  Similarity=0.262  Sum_probs=278.9

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEee--cccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR--EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT   78 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~--~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~   78 (685)
                      |+.-|+|+.|+|||. ++||.+.||.|.+||-.+++.+..+.  .+|.+.|++++|+||+..++|+|.|.+++|||+.+.
T Consensus       189 HskFV~~VRysPDG~-~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~  267 (603)
T KOG0318|consen  189 HSKFVNCVRYSPDGS-RFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTN  267 (603)
T ss_pred             cccceeeEEECCCCC-eEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeecc
Confidence            667799999999999 99999999999999999999988885  479999999999999999999999999999998664


Q ss_pred             CC---------------------------------------CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEE
Q 005656           79 DG---------------------------------------DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF  119 (685)
Q Consensus        79 ~~---------------------------------------~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vw  119 (685)
                      ..                                       .+..+..+.||...|+++..+|++++|++|+.||.|.-|
T Consensus       268 slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W  347 (603)
T KOG0318|consen  268 SLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSW  347 (603)
T ss_pred             ceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEE
Confidence            21                                       123455667999999999999999999999999999999


Q ss_pred             EeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCC
Q 005656          120 SVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCP  199 (685)
Q Consensus       120 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  199 (685)
                      +..++...+.....+.                ..+..+...     +...+++++.++ .+++.++...........   
T Consensus       348 ~~~~g~~~~~~g~~h~----------------nqI~~~~~~-----~~~~~~t~g~Dd-~l~~~~~~~~~~t~~~~~---  402 (603)
T KOG0318|consen  348 DSGSGTSDRLAGKGHT----------------NQIKGMAAS-----ESGELFTIGWDD-TLRVISLKDNGYTKSEVV---  402 (603)
T ss_pred             ecCCcccccccccccc----------------ceEEEEeec-----CCCcEEEEecCC-eEEEEecccCccccccee---
Confidence            9988876554432221                111111111     112344444443 344444433222222111   


Q ss_pred             CCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEE
Q 005656          200 ENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW  279 (685)
Q Consensus       200 ~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw  279 (685)
                      .......+++..+++..+++.+.++.+.+-+...- ...           .-.-...+++++|++..++.|+.||.|++|
T Consensus       403 ~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~-~~~-----------~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvy  470 (603)
T KOG0318|consen  403 KLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKV-SSI-----------PIGYESSAVAVSPDGSEVAVGGQDGKVHVY  470 (603)
T ss_pred             ecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcc-eee-----------ccccccceEEEcCCCCEEEEecccceEEEE
Confidence            22344558999999988888887775544433221 111           223456789999999999999999999999


Q ss_pred             ECCCCceE---EEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEec-CCCCeEEEEEcCCCCEEEEEeC
Q 005656          280 DFKGRDLK---SRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG-HTDRITDFCFSEDGKWLLSSGM  355 (685)
Q Consensus       280 d~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~-h~~~I~~l~~spdg~~l~s~s~  355 (685)
                      .+....+.   ....+.+++++++|+||+.+||+|...+.+.+||+.+++......+ |+.+|++++|+|+..++||||.
T Consensus       471 sl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSl  550 (603)
T KOG0318|consen  471 SLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSL  550 (603)
T ss_pred             EecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccc
Confidence            99876533   4456779999999999999999999999999999999877444444 9999999999999999999999


Q ss_pred             CCcEEEEEcCCCceeeEEe--eccceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656          356 DGSLRIWDVILARQIDAIH--VDVSITALSLSPNMDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       356 Dg~I~iwd~~~~~~i~~~~--~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~  406 (685)
                      |-.|.||++......-.++  +...|+.+.|-.+ ..+++++.|. .|++|+.
T Consensus       551 Dt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde-~tvvSsG~Da-~iK~W~v  601 (603)
T KOG0318|consen  551 DTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDE-STVVSSGQDA-NIKVWNV  601 (603)
T ss_pred             cceEEEEEccChhhheEeccccccCceeEEEecC-ceEEeccCcc-eeEEecc
Confidence            9999999998654433332  3334999999654 6788888887 8999974

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.3e-38  Score=319.47  Aligned_cols=389  Identities=19%  Similarity=0.301  Sum_probs=293.1

Q ss_pred             CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCC
Q 005656            3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP   82 (685)
Q Consensus         3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~   82 (685)
                      ..|++++.+||+. +|++++..+.+++|++.+++++...+..|.+||.-++|+|.+.+|++|+.||.+++||+..+    
T Consensus        63 d~ita~~l~~d~~-~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~----  137 (775)
T KOG0319|consen   63 DEITALALTPDEE-VLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNG----  137 (775)
T ss_pred             hhhheeeecCCcc-EEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCC----
Confidence            3589999999988 99999999999999999999999999559999999999999999999999999999999988    


Q ss_pred             ceeEecccCCCCCeEEEEecCCC--EEEEEeCCCceEEEEeecCce-eeEechhhHHHHHhhccccc-------------
Q 005656           83 RLLRFRSGHSAPPLCIRFYANGR--HILSAGQDRAFRLFSVIQDQQ-SRELSQRHVAKRARKLKMKE-------------  146 (685)
Q Consensus        83 ~~~~~~~~h~~~v~~i~~~~~~~--~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~-------------  146 (685)
                      .+...++||.+.|.++.|+|+-.  .|++|..|+++++||+.+... ...+. .+.... ..+.+..             
T Consensus       138 ~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~-~H~S~v-tsL~~~~d~~~~ls~~RDkv  215 (775)
T KOG0319|consen  138 YCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMI-LHKSAV-TSLAFSEDSLELLSVGRDKV  215 (775)
T ss_pred             EEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHH-hhhhhe-eeeeeccCCceEEEeccCcE
Confidence            88899999999999999999744  588999999999999986544 11110 000000 0000000             


Q ss_pred             ---------cccccCceee-ee-cccccccCC--cceEEEEcCCceEEEEEc----------------------------
Q 005656          147 ---------EELKLKPVIA-FD-CAEIRERDW--CNVVTCHMDTAQAYVWRL----------------------------  185 (685)
Q Consensus       147 ---------~~~~~~~~~~-~~-~~~~~~~~~--~~~~~~~~~~~~~~~w~~----------------------------  185 (685)
                               ..++..|... +. ....++...  ...+....+++.++.|+.                            
T Consensus       216 i~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~  295 (775)
T KOG0319|consen  216 IIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQ  295 (775)
T ss_pred             EEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCc
Confidence                     0000000000 00 000000000  011222222223333322                            


Q ss_pred             ----------------------------------------------------------CccccCceeecCCCCCCCCeEE
Q 005656          186 ----------------------------------------------------------QNFVLGEHILRPCPENPTAVKA  207 (685)
Q Consensus       186 ----------------------------------------------------------~~~~~~~~~~~~~~~~~~~v~~  207 (685)
                                                                                ......     ...+|...|.+
T Consensus       296 ~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-----ii~GH~e~vlS  370 (775)
T KOG0319|consen  296 LLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-----IIPGHTEAVLS  370 (775)
T ss_pred             eEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-----EEeCchhheee
Confidence                                                                      211111     12366777888


Q ss_pred             EEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCC-CEEEEEECCCeEEEEECCCCce
Q 005656          208 CTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDL  286 (685)
Q Consensus       208 ~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~~  286 (685)
                      +....+|.++++|+.|.++++|.+..+.......    ....+|...|.+++++..+ .+|+++|.|+++++|++...+.
T Consensus       371 L~~~~~g~llat~sKD~svilWr~~~~~~~~~~~----a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~  446 (775)
T KOG0319|consen  371 LDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCV----AQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKE  446 (775)
T ss_pred             eeecccCcEEEEecCCceEEEEEecCCcchhhhh----hhhcccccccceeeecccCccEEEEecCCceEEEecCCCccc
Confidence            8877788899999999999999885443322111    1233899999999997665 6899999999999999986221


Q ss_pred             E-----E-----EeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q 005656          287 K-----S-----RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD  356 (685)
Q Consensus       287 ~-----~-----~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~D  356 (685)
                      .     .     ...|+..|++++++|+.+++|+|+.|.+.+||+++..+...++.||...|.++.|+|..+.++|+|.|
T Consensus       447 ~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD  526 (775)
T KOG0319|consen  447 TAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGD  526 (775)
T ss_pred             ccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCC
Confidence            1     1     12345789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656          357 GSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNRC  408 (685)
Q Consensus       357 g~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~~~~  408 (685)
                      ++|+||.+.+..++.+|.+|.. |..+.|-.+|+.|++++.|| -|++|+.+.
T Consensus       527 ~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adG-liKlWnikt  578 (775)
T KOG0319|consen  527 KTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADG-LIKLWNIKT  578 (775)
T ss_pred             ceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCC-cEEEEeccc
Confidence            9999999999999999997665 99999999999999999998 999998654

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=8.4e-38  Score=290.94  Aligned_cols=322  Identities=14%  Similarity=0.182  Sum_probs=279.4

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG   80 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~   80 (685)
                      |+++|.+++.+|+.+ ++|||+.|..-.||+..++.....+. +|.+.|+++.|+.+|.+||||+.+|.|+||...++. 
T Consensus        63 H~~svFavsl~P~~~-l~aTGGgDD~AflW~~~~ge~~~elt-gHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~-  139 (399)
T KOG0296|consen   63 HTDSVFAVSLHPNNN-LVATGGGDDLAFLWDISTGEFAGELT-GHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGG-  139 (399)
T ss_pred             cCCceEEEEeCCCCc-eEEecCCCceEEEEEccCCcceeEec-CCCCceEEEEEccCceEEEecCCCccEEEEEcccCc-
Confidence            899999999999776 99999999999999999999888887 999999999999999999999999999999998873 


Q ss_pred             CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656           81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  160 (685)
Q Consensus        81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (685)
                         ....+......+.-+.|+|-+..|+.|+.||.+.+|.+.++...+.+.                             
T Consensus       140 ---~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~-----------------------------  187 (399)
T KOG0296|consen  140 ---EQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMS-----------------------------  187 (399)
T ss_pred             ---eEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEec-----------------------------
Confidence               333443556778889999999999999999999999998765555443                             


Q ss_pred             cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656          161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  240 (685)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~  240 (685)
                                                             +|..++++=.|.|+|+.+++|+.||+|++||+.++......
T Consensus       188 ---------------------------------------Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~  228 (399)
T KOG0296|consen  188 ---------------------------------------GHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKI  228 (399)
T ss_pred             ---------------------------------------CCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEe
Confidence                                                   77889999999999999999999999999999999887766


Q ss_pred             ccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec---------CCceeE---EEEeecCCEE
Q 005656          241 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV---------GCSLVK---IVYHRVNGLL  308 (685)
Q Consensus       241 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---------~~~i~~---~~~~~~~~~l  308 (685)
                      ..       .......++.++..+..++.|+.++.+++-+..+++.+.....         ...+.+   +.++..-.+.
T Consensus       229 ~~-------~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~  301 (399)
T KOG0296|consen  229 TQ-------AEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLA  301 (399)
T ss_pred             cc-------cccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchh
Confidence            42       3345677889999999999999999999999999988876653         133334   4444455689


Q ss_pred             EEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccc-eEEEEEcCC
Q 005656          309 ATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPN  387 (685)
Q Consensus       309 ~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spd  387 (685)
                      |+|+-||+|.|||+...++...+. |...|+.+.|-+ ..+|++++.+|.|+.||.++|+++..+.+|.. |.+++++|+
T Consensus       302 A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~  379 (399)
T KOG0296|consen  302 ACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQ  379 (399)
T ss_pred             hcccccceEEEEecccchhheecc-CCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCC
Confidence            999999999999999877655554 889999999988 68999999999999999999999999998776 999999999


Q ss_pred             CCeEEEEEeCCCeEEEEEc
Q 005656          388 MDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       388 g~~Lat~~~d~~~I~lW~~  406 (685)
                      +++++|++.|. ..+||..
T Consensus       380 ~~~vvT~s~D~-~a~VF~v  397 (399)
T KOG0296|consen  380 KRLVVTVSDDN-TALVFEV  397 (399)
T ss_pred             CcEEEEecCCC-eEEEEec
Confidence            99999999886 8899864

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.7e-37  Score=295.19  Aligned_cols=451  Identities=14%  Similarity=0.240  Sum_probs=326.4

Q ss_pred             CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCC
Q 005656            3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP   82 (685)
Q Consensus         3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~   82 (685)
                      ++|++++|+|...+-+|+.++ -.+.||+..+.....++. .....|.++.|..||++|+.|...|.|+|+|+.+.    
T Consensus        27 ~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~s-rFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r----  100 (487)
T KOG0310|consen   27 NSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFS-RFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR----  100 (487)
T ss_pred             CcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHH-hhccceeEEEeecCCeEEEccCCcCcEEEeccccH----
Confidence            579999999977655666553 459999999888777776 68899999999999999999999999999996553    


Q ss_pred             ceeEecccCCCCCeEEEEecC-CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccc
Q 005656           83 RLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE  161 (685)
Q Consensus        83 ~~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (685)
                      ..++.+.+|..||..+.|+|. +..+++|+.|+.+++||+.+...                                   
T Consensus       101 ~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-----------------------------------  145 (487)
T KOG0310|consen  101 VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-----------------------------------  145 (487)
T ss_pred             HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-----------------------------------
Confidence            678889999999999999996 55677888888999999854421                                   


Q ss_pred             ccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccc
Q 005656          162 IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYL  241 (685)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~  241 (685)
                                                                                        .+++          
T Consensus       146 ------------------------------------------------------------------~~~l----------  149 (487)
T KOG0310|consen  146 ------------------------------------------------------------------QAEL----------  149 (487)
T ss_pred             ------------------------------------------------------------------EEEe----------
Confidence                                                                              1111          


Q ss_pred             cccccccCCCCcCEEEEEEcCCCC-EEEEEECCCeEEEEECCCC-ceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEE
Q 005656          242 DMSERSNYAHNGEVVGVACDSTNT-LMISAGYHGDIKVWDFKGR-DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRL  319 (685)
Q Consensus       242 ~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i  319 (685)
                             .+|+..|+|.+|+|.+. .++|||.||+|++||++.. ..+.+++++.+|..+.+-|.|.++|+++. +.|+|
T Consensus       150 -------~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkV  221 (487)
T KOG0310|consen  150 -------SGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKV  221 (487)
T ss_pred             -------cCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEE
Confidence                   18999999999999764 7899999999999999977 78889999999999999999999998875 58999


Q ss_pred             EEcCCC-eeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCC
Q 005656          320 FDVVAL-RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ  398 (685)
Q Consensus       320 ~d~~~~-~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~  398 (685)
                      ||+.+| +.+..+..|...|||+++..++..|++||-|+.|++||+.+.+.+..+..+++|.+++.+|+++.++.|..||
T Consensus       222 WDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnG  301 (487)
T KOG0310|consen  222 WDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNG  301 (487)
T ss_pred             EEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccc
Confidence            999955 5566666699999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CeEEEEEcCCCcCCCCCCCCCCCCccceeecCCCccCCCCcCCCCCCCCCCcCCCCCCCCCCCCCCcCCCCcCceeecCC
Q 005656          399 NGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLL  478 (685)
Q Consensus       399 ~~I~lW~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~  478 (685)
                       .+.+-.  ..           .+                             .+..         .            .
T Consensus       302 -lv~~rr--~~-----------~k-----------------------------~k~s---------~------------~  317 (487)
T KOG0310|consen  302 -LVSIRR--RE-----------VK-----------------------------KKPS---------K------------E  317 (487)
T ss_pred             -eeeeeh--hh-----------cc-----------------------------cCCC---------c------------c
Confidence             443320  00           00                             0000         0            0


Q ss_pred             cHhHHhhccchHHHHhhcCCCCCCCCCCCCCccccCCCCCCCccccCCCCCccccccc-cccCCCCCCCCCccHHHHHHh
Q 005656          479 PKSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEILFKPSESTKEDTES-LKVGNKTKPDIPVSQFIQLLH  557 (685)
Q Consensus       479 ~~~~~~~~~~l~~i~~r~k~~~~~~~~~~~pffl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~  557 (685)
                      |+              |.       +++..-||...... +..         .+.++- .++.+..++    ..|-+.|.
T Consensus       318 ~~--------------~r-------~~r~~~~~v~~r~~-~~~---------~~~ddiv~n~~~r~~L----~~~Dk~Lk  362 (487)
T KOG0310|consen  318 PK--------------RR-------ADRSDGFFVKVRGQ-NYK---------GQKDDIVVNEVKRLKL----TYFDKRLK  362 (487)
T ss_pred             cc--------------cc-------ccccccceEeeecc-ccc---------cccceeEeccccccCC----chHHHHHh
Confidence            00              00       00000111100000 000         000000 001111112    22333332


Q ss_pred             hccccCChHHH-HHHHh-cCCcchhhhhhccCCCCCCCCcccccCcccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 005656          558 SCAEMKNFSAF-TDYIK-SLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFL  635 (685)
Q Consensus       558 ~~~~~~~~~~~-~~~l~-~~~~s~id~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~e~~~~~l~~~l  635 (685)
                      +=    .|.+. ..+|. +..|..+=.-|+-|-. .++-..++.++ +...+..+|.||...|...|-+..+.-|.+.+|
T Consensus       363 ~F----~~kkALd~vl~~~~~pelvvavl~eL~~-Rg~l~~AL~gr-de~eL~~lLnfl~~~l~~~rf~~~L~~~~~~iL  436 (487)
T KOG0310|consen  363 QF----KHKKALDHVLEPKKDPELVVAVLSELVH-RGGLRRALAGR-DESELAPLLNFLVKNLTVVRFASILMEVVSVIL  436 (487)
T ss_pred             hh----hHHHHHHHHhcccCChhHHHHHHHHHHH-hhHHHHHhcCc-cHHHHHHHHHHHHhhccchhhHHHHHHHHHHHH
Confidence            21    12222 22223 3333333322222211 11111111111 357799999999999999999999999999999


Q ss_pred             HhhccccccchHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhccccC
Q 005656          636 KIHGETVRCHTKLQDKARKLLEVQSAVWQKIDKMFQSARCVVSFLSNSQ  684 (685)
Q Consensus       636 ~~h~~~l~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  684 (685)
                      .+++..|..+|.+...+..|+..++++..-.+++ ....+||+-|..+-
T Consensus       437 d~Y~~~i~~s~~l~k~i~~L~~~V~~Ev~~q~el-lr~~G~ldmL~~~t  484 (487)
T KOG0310|consen  437 DLYARDIEGSPMLAKLIQALRGKVEQEVRVQKEL-LRLIGMLDMLGSIT  484 (487)
T ss_pred             HHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHhh
Confidence            9999999999999999999999999998777666 78889998876554

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=4.3e-38  Score=296.62  Aligned_cols=281  Identities=21%  Similarity=0.386  Sum_probs=245.1

Q ss_pred             CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCC
Q 005656            3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP   82 (685)
Q Consensus         3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~   82 (685)
                      -+|..+.|.|+|+ .|+||+..|...+|+..+......++ +|+.+|+++.|++++.+++||+.+|.|++|+.+..    
T Consensus        97 c~V~~v~WtPeGR-RLltgs~SGEFtLWNg~~fnFEtilQ-aHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn----  170 (464)
T KOG0284|consen   97 CPVNVVRWTPEGR-RLLTGSQSGEFTLWNGTSFNFETILQ-AHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN----  170 (464)
T ss_pred             cceeeEEEcCCCc-eeEeecccccEEEecCceeeHHHHhh-hhcccceeEEEccCCCEEEEcCCCceEEecccchh----
Confidence            4799999999999 89999999999999986666555565 99999999999999999999999999999987654    


Q ss_pred             ceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccc
Q 005656           83 RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI  162 (685)
Q Consensus        83 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (685)
                      ........|...|++++|+|+...+++|+.||+|+|||....+....+                                
T Consensus       171 nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL--------------------------------  218 (464)
T KOG0284|consen  171 NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL--------------------------------  218 (464)
T ss_pred             hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee--------------------------------
Confidence            222233345599999999999999999999999999998544322211                                


Q ss_pred             cccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccc
Q 005656          163 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD  242 (685)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~  242 (685)
                                                                                                      
T Consensus       219 --------------------------------------------------------------------------------  218 (464)
T KOG0284|consen  219 --------------------------------------------------------------------------------  218 (464)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEE
Q 005656          243 MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFD  321 (685)
Q Consensus       243 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d  321 (685)
                            .+|.-.|.+++|+|....++++|.|..|++||.+++.++.++..+ ..|..+.|+|++++|++++.|..+++||
T Consensus       219 ------~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~D  292 (464)
T KOG0284|consen  219 ------RGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFD  292 (464)
T ss_pred             ------ccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEe
Confidence                  189999999999999999999999999999999999999888765 8899999999999999999999999999


Q ss_pred             cCCCeeEEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeEEe--eccceEEEEEcCCCCeEEEEEeCC
Q 005656          322 VVALRMVRKFEGHTDRITDFCFSE-DGKWLLSSGMDGSLRIWDVILARQIDAIH--VDVSITALSLSPNMDVLATAHVDQ  398 (685)
Q Consensus       322 ~~~~~~~~~~~~h~~~I~~l~~sp-dg~~l~s~s~Dg~I~iwd~~~~~~i~~~~--~~~~v~~v~~spdg~~Lat~~~d~  398 (685)
                      +++.+.++++++|...|++++|+| ...+|.+|+.||.|..|.+...+.+..+.  +...|++++|+|-|.+|++|+.|.
T Consensus       293 iR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~  372 (464)
T KOG0284|consen  293 IRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDR  372 (464)
T ss_pred             hhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCc
Confidence            999999999999999999999999 45688899999999999999777766664  344599999999999999999886


Q ss_pred             CeEEEEEcCC
Q 005656          399 NGVYLWVNRC  408 (685)
Q Consensus       399 ~~I~lW~~~~  408 (685)
                       .+++|....
T Consensus       373 -t~rfw~r~r  381 (464)
T KOG0284|consen  373 -TVRFWTRNR  381 (464)
T ss_pred             -ceeeeccCC
Confidence             999997443

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=4.7e-37  Score=284.61  Aligned_cols=280  Identities=21%  Similarity=0.407  Sum_probs=254.3

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG   80 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~   80 (685)
                      |-|.|.|+++.|..+ +++||+.|++|.|||+.+|++..++. ||-..|..+++|+..+||++++.|+.|+.||+...  
T Consensus       150 HlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lkltlt-Ghi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~n--  225 (460)
T KOG0285|consen  150 HLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKLTLT-GHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN--  225 (460)
T ss_pred             ccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEEeec-chhheeeeeeecccCceEEEecCCCeeEEEechhh--
Confidence            789999999999877 99999999999999999999999998 99999999999999999999999999999999987  


Q ss_pred             CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656           81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  160 (685)
Q Consensus        81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (685)
                        +.++...||-..|.|++.+|.-..|++|+.|.++|+||+++...+..+.                             
T Consensus       226 --kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~-----------------------------  274 (460)
T KOG0285|consen  226 --KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS-----------------------------  274 (460)
T ss_pred             --hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEec-----------------------------
Confidence              8889999999999999999999999999999999999997765433331                             


Q ss_pred             cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656          161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  240 (685)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~  240 (685)
                                                                                                      
T Consensus       275 --------------------------------------------------------------------------------  274 (460)
T KOG0285|consen  275 --------------------------------------------------------------------------------  274 (460)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEE
Q 005656          241 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRL  319 (685)
Q Consensus       241 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i  319 (685)
                               +|..+|..+.+.|.+..+++|+.|++|++||+..++...++.++ ..+.+++.+|....+|+++.| .|+-
T Consensus       275 ---------GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~  344 (460)
T KOG0285|consen  275 ---------GHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQ  344 (460)
T ss_pred             ---------CCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-ccee
Confidence                     89999999999998888999999999999999999887777665 789999999999999999887 5899


Q ss_pred             EEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEe---------eccceEEEEEcCCCCe
Q 005656          320 FDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH---------VDVSITALSLSPNMDV  390 (685)
Q Consensus       320 ~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~---------~~~~v~~v~~spdg~~  390 (685)
                      |++..|..+..+.+|+..|++++...|| ++++|++.|.+.+||.++|...+...         ....|.+.+|...|..
T Consensus       345 w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~r  423 (460)
T KOG0285|consen  345 WKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSR  423 (460)
T ss_pred             ccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCce
Confidence            9999999999999999999999999887 78999999999999999987655442         2345899999999999


Q ss_pred             EEEEEeCCCeEEEEEcC
Q 005656          391 LATAHVDQNGVYLWVNR  407 (685)
Q Consensus       391 Lat~~~d~~~I~lW~~~  407 (685)
                      |+++..|. +|++|.-.
T Consensus       424 lit~eadK-tIk~~keD  439 (460)
T KOG0285|consen  424 LITGEADK-TIKMYKED  439 (460)
T ss_pred             EEeccCCc-ceEEEecc
Confidence            99999997 99999643

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.6e-36  Score=268.05  Aligned_cols=269  Identities=20%  Similarity=0.289  Sum_probs=234.8

Q ss_pred             cEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHH
Q 005656           59 PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKR  138 (685)
Q Consensus        59 ~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  138 (685)
                      -+|+|+|.|.+||+|...++    ++.+++......|+.+...|+++.|++++. ..||+||+.++......        
T Consensus        11 viLvsA~YDhTIRfWqa~tG----~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~--------   77 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTG----ICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVA--------   77 (311)
T ss_pred             eEEEeccCcceeeeeehhcC----eEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCcee--------
Confidence            38999999999999998888    889998888899999999999999988874 57999999877542111        


Q ss_pred             HhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEE
Q 005656          139 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAV  218 (685)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  218 (685)
                                                                                ...++...|+++.|..+|++++
T Consensus        78 ----------------------------------------------------------t~e~h~kNVtaVgF~~dgrWMy   99 (311)
T KOG0315|consen   78 ----------------------------------------------------------TFEGHTKNVTAVGFQCDGRWMY   99 (311)
T ss_pred             ----------------------------------------------------------EEeccCCceEEEEEeecCeEEE
Confidence                                                                      1116778999999999999999


Q ss_pred             EEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec--CCce
Q 005656          219 LGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV--GCSL  296 (685)
Q Consensus       219 ~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~i  296 (685)
                      +|++||.+++||+++....+.+         .|..+|+++..+|+...|++|..+|.|++||+........+..  ..++
T Consensus       100 TgseDgt~kIWdlR~~~~qR~~---------~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i  170 (311)
T KOG0315|consen  100 TGSEDGTVKIWDLRSLSCQRNY---------QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSI  170 (311)
T ss_pred             ecCCCceEEEEeccCcccchhc---------cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcce
Confidence            9999999999999997666655         7889999999999999999999999999999998766665544  3789


Q ss_pred             eEEEEeecCCEEEEEeCCCeEEEEEcCCC------eeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-ce
Q 005656          297 VKIVYHRVNGLLATVADDLVIRLFDVVAL------RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA-RQ  369 (685)
Q Consensus       297 ~~~~~~~~~~~l~~~~~dg~I~i~d~~~~------~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~-~~  369 (685)
                      .++...|||.+++.+...|..++|++-+.      +++.+++.|++.|..+.+|||+++||++|.|.+++||+..+. +.
T Consensus       171 ~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kl  250 (311)
T KOG0315|consen  171 QSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKL  250 (311)
T ss_pred             eeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceee
Confidence            99999999999999999999999998764      567778899999999999999999999999999999999987 44


Q ss_pred             eeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656          370 IDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNRC  408 (685)
Q Consensus       370 i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~~~~  408 (685)
                      -..+.++.. ++.++||.||.||+||+.|. .+++|+...
T Consensus       251 e~~l~gh~rWvWdc~FS~dg~YlvTassd~-~~rlW~~~~  289 (311)
T KOG0315|consen  251 ELVLTGHQRWVWDCAFSADGEYLVTASSDH-TARLWDLSA  289 (311)
T ss_pred             EEEeecCCceEEeeeeccCccEEEecCCCC-ceeeccccc
Confidence            455666655 99999999999999999996 999998543

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.3e-36  Score=275.97  Aligned_cols=280  Identities=18%  Similarity=0.345  Sum_probs=247.9

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCC-CeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEK-RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD   79 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~-~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~   79 (685)
                      |+|.|..+.|+|+|. ++|||+.|..|.+|++.. -+....++ +|.++|..+.|.+|++.++++|.|.+|+.||+.++ 
T Consensus        46 h~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~~~lk-gHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG-  122 (338)
T KOG0265|consen   46 HKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENFWVLK-GHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETG-  122 (338)
T ss_pred             CcceEEEEEECCCCC-eEeecCCcceEEEEeccccccceeeec-cccceeEeeeeccCCCEEEEecCCceEEEEecccc-
Confidence            789999999999999 999999999999999654 45566777 99999999999999999999999999999999998 


Q ss_pred             CCCceeEecccCCCCCeEEEEecCCC-EEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeee
Q 005656           80 GDPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD  158 (685)
Q Consensus        80 ~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (685)
                         +..+..++|..-|+++.-+.-|. .+.+++.||++++||+++....+.+                            
T Consensus       123 ---~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~----------------------------  171 (338)
T KOG0265|consen  123 ---KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF----------------------------  171 (338)
T ss_pred             ---eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc----------------------------
Confidence               77788889999999988544454 5668889999999999877655544                            


Q ss_pred             cccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccc
Q 005656          159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG  238 (685)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~  238 (685)
                                                               ..+..+++++|...+..+.+|+-|+.|++||++.+....
T Consensus       172 -----------------------------------------~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~  210 (338)
T KOG0265|consen  172 -----------------------------------------ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLY  210 (338)
T ss_pred             -----------------------------------------ccceeEEEEEecccccceeeccccCceeeeccccCcceE
Confidence                                                     346779999999999999999999999999999888877


Q ss_pred             ccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCC----CceEEEeecC-----CceeEEEEeecCCEEE
Q 005656          239 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG----RDLKSRWEVG-----CSLVKIVYHRVNGLLA  309 (685)
Q Consensus       239 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~----~~~~~~~~~~-----~~i~~~~~~~~~~~l~  309 (685)
                      .+.        +|...|+++..+++|.++.+-+.|.++++||++-    .+++..+..+     .....++|+|+++.+.
T Consensus       211 ~ls--------Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~  282 (338)
T KOG0265|consen  211 TLS--------GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKIT  282 (338)
T ss_pred             Eee--------cccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccc
Confidence            765        9999999999999999999999999999999974    3335555433     4567899999999999


Q ss_pred             EEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005656          310 TVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD  363 (685)
Q Consensus       310 ~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd  363 (685)
                      .|+.|..+++||..+...+..+.||.+.|++++|+|...+|.+++.|.+|++=+
T Consensus       283 ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  283 AGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             cccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence            999999999999999999999999999999999999999999999999998743

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.1e-35  Score=266.28  Aligned_cols=284  Identities=19%  Similarity=0.337  Sum_probs=238.3

Q ss_pred             CCCcEEEEEEccC-CCCEEEEEeCCCcEEEEeCCC---CeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEec
Q 005656            1 MRGAVTALAFSSD-GQPLLASGASSGVISIWNLEK---RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD   76 (685)
Q Consensus         1 h~~~V~~l~fspd-g~~~latg~~dg~I~vwd~~~---~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~   76 (685)
                      |++.|..++|+|- |. +||+++.|..|++|+..+   -.+...+..+|+..|++++|+|.|++|+++|.|.++.||  .
T Consensus        13 h~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw--~   89 (312)
T KOG0645|consen   13 HKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIW--K   89 (312)
T ss_pred             CCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEe--e
Confidence            7889999999998 87 999999999999999984   567777777999999999999999999999999999999  4


Q ss_pred             CCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceee
Q 005656           77 TTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA  156 (685)
Q Consensus        77 ~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (685)
                      ..++.++++..+.||...|.|++|+++|++|++|++|..|.+|.+..+......                          
T Consensus        90 k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~--------------------------  143 (312)
T KOG0645|consen   90 KEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECI--------------------------  143 (312)
T ss_pred             cCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEE--------------------------
Confidence            456778899999999999999999999999999999999999998754432221                          


Q ss_pred             eecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCC-C-
Q 005656          157 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS-G-  234 (685)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~-~-  234 (685)
                                                             .....|...|..+.|+|....|++++.|.+|++|.-.. + 
T Consensus       144 ---------------------------------------aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~ddd  184 (312)
T KOG0645|consen  144 ---------------------------------------AVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDD  184 (312)
T ss_pred             ---------------------------------------eeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCC
Confidence                                                   11227888999999999999999999999999998763 2 


Q ss_pred             -ccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeC
Q 005656          235 -ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVAD  313 (685)
Q Consensus       235 -~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  313 (685)
                       ....++.        +|...|.+++|++.|..+++++.|++++||...+.-   ...+...+..+.|.  ...|++++.
T Consensus       185 W~c~~tl~--------g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~---~~~~sr~~Y~v~W~--~~~IaS~gg  251 (312)
T KOG0645|consen  185 WECVQTLD--------GHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL---SGMHSRALYDVPWD--NGVIASGGG  251 (312)
T ss_pred             eeEEEEec--------CccceEEEEEecCCCceEEEecCCcceEeeeeccCc---chhcccceEeeeec--ccceEeccC
Confidence             2334443        899999999999999999999999999999865221   12234678888888  679999999


Q ss_pred             CCeEEEEEcCCC------eeEE-EEecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcC
Q 005656          314 DLVIRLFDVVAL------RMVR-KFEGHTDRITDFCFSED-GKWLLSSGMDGSLRIWDVI  365 (685)
Q Consensus       314 dg~I~i~d~~~~------~~~~-~~~~h~~~I~~l~~spd-g~~l~s~s~Dg~I~iwd~~  365 (685)
                      |+.|++|.....      +.+. .-..|...|++++|.|. ...|++|+.||.|++|.+.
T Consensus       252 D~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  252 DDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             CCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            999999976642      1111 22468889999999995 6789999999999999874

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=6.8e-37  Score=312.53  Aligned_cols=270  Identities=21%  Similarity=0.352  Sum_probs=234.4

Q ss_pred             cEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCc
Q 005656            4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPR   83 (685)
Q Consensus         4 ~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~   83 (685)
                      .++|..|++|+. +||.|..|..|++|.+...++. .++  +...         ...+=+.+.|-.+.+-|-+..    .
T Consensus       380 ~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~-~lk--~~~~---------l~~~d~~sad~~~~~~D~~~~----~  442 (707)
T KOG0263|consen  380 GVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLK-KLK--DASD---------LSNIDTESADVDVDMLDDDSS----G  442 (707)
T ss_pred             cceeEeecCCcc-hhhccccccEEEEEecchhhhc-ccc--chhh---------hccccccccchhhhhccccCC----c
Confidence            589999999999 9999999999999998765332 222  1111         112234445555666655544    3


Q ss_pred             eeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccccc
Q 005656           84 LLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIR  163 (685)
Q Consensus        84 ~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (685)
                      ..+.+.||.+||..+.|+|+.++|++++.|+++|+|++.+..+...+.                                
T Consensus       443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~--------------------------------  490 (707)
T KOG0263|consen  443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK--------------------------------  490 (707)
T ss_pred             eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEec--------------------------------
Confidence            445578999999999999999999999999999999998877655543                                


Q ss_pred             ccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccc
Q 005656          164 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDM  243 (685)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~  243 (685)
                                                          +|..+|..+.|+|.|-|+++++.|++.++|........+.+.  
T Consensus       491 ------------------------------------GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifa--  532 (707)
T KOG0263|consen  491 ------------------------------------GHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFA--  532 (707)
T ss_pred             ------------------------------------CCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhc--
Confidence                                                788999999999999999999999999999998877776665  


Q ss_pred             cccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEc
Q 005656          244 SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDV  322 (685)
Q Consensus       244 ~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~  322 (685)
                            +|.+.|.|+.|+|+..++++||.|.+|++||+.+|..++.+.+| ++|.+++|+|+|++|++|+.||.|.+||+
T Consensus       533 ------ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl  606 (707)
T KOG0263|consen  533 ------GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDL  606 (707)
T ss_pred             ------ccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEc
Confidence                  99999999999999999999999999999999999999998876 99999999999999999999999999999


Q ss_pred             CCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005656          323 VALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL  366 (685)
Q Consensus       323 ~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~  366 (685)
                      .+++.+..+.+|++.|+++.||.||..||+||.|.+|++||+..
T Consensus       607 ~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  607 ANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             CCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence            99999999999999999999999999999999999999999864

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=3.2e-35  Score=282.20  Aligned_cols=278  Identities=22%  Similarity=0.367  Sum_probs=250.3

Q ss_pred             CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCC
Q 005656            3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP   82 (685)
Q Consensus         3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~   82 (685)
                      ..||+++|+.+|. +||+|+.||.++||+.. |.++.++. .|.++|.++.|+..|.+|++++.|+++.+||..++    
T Consensus       236 kdVT~L~Wn~~G~-~LatG~~~G~~riw~~~-G~l~~tl~-~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g----  308 (524)
T KOG0273|consen  236 KDVTSLDWNNDGT-LLATGSEDGEARIWNKD-GNLISTLG-QHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG----  308 (524)
T ss_pred             CCcceEEecCCCC-eEEEeecCcEEEEEecC-chhhhhhh-ccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc----
Confidence            4699999999999 99999999999999964 56666776 89999999999999999999999999999998777    


Q ss_pred             ceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccc
Q 005656           83 RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI  162 (685)
Q Consensus        83 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (685)
                      .....+.-|..+-..+.|-.+. .+++++.||.|+|+.+.......++.                               
T Consensus       309 ~~~q~f~~~s~~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~~P~~t~~-------------------------------  356 (524)
T KOG0273|consen  309 TVKQQFEFHSAPALDVDWQSND-EFATSSTDGCIHVCKVGEDRPVKTFI-------------------------------  356 (524)
T ss_pred             eEEEeeeeccCCccceEEecCc-eEeecCCCceEEEEEecCCCcceeee-------------------------------
Confidence            6666677788887889997654 68999999999999998776666553                               


Q ss_pred             cccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccc
Q 005656          163 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD  242 (685)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~  242 (685)
                                                           +|.+.|.++.|.|.|..|++++.|+++++|++........+. 
T Consensus       357 -------------------------------------GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~-  398 (524)
T KOG0273|consen  357 -------------------------------------GHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ-  398 (524)
T ss_pred             -------------------------------------cccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhh-
Confidence                                                 789999999999999999999999999999998887777665 


Q ss_pred             ccccccCCCCcCEEEEEEcCCC---------CEEEEEECCCeEEEEECCCCceEEEe-ecCCceeEEEEeecCCEEEEEe
Q 005656          243 MSERSNYAHNGEVVGVACDSTN---------TLMISAGYHGDIKVWDFKGRDLKSRW-EVGCSLVKIVYHRVNGLLATVA  312 (685)
Q Consensus       243 ~~~~~~~~h~~~v~~l~~~~~~---------~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~  312 (685)
                             +|...|..+.|+|.|         ..+++++.|++|++||+..+.++..+ .+..+|.+++|+|+|+++|+|+
T Consensus       399 -------~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs  471 (524)
T KOG0273|consen  399 -------AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGS  471 (524)
T ss_pred             -------hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecC
Confidence                   999999999999965         47899999999999999999999998 5669999999999999999999


Q ss_pred             CCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005656          313 DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI  365 (685)
Q Consensus       313 ~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~  365 (685)
                      .||.|.||++++++.++...+ ++.|..++|+.+|..|..+-.||.+++.|++
T Consensus       472 ~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  472 LDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             CCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            999999999999999999885 4569999999999999999999999999875

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.8e-35  Score=275.41  Aligned_cols=291  Identities=21%  Similarity=0.308  Sum_probs=256.0

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG   80 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~   80 (685)
                      |+..|+|+.||.||. +||||+-+|.|.||...++.....+. .--..|.-+.|+|.+..|+.|+.||.+.+|.+..+  
T Consensus       105 HKDSVt~~~Fshdgt-lLATGdmsG~v~v~~~stg~~~~~~~-~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~--  180 (399)
T KOG0296|consen  105 HKDSVTCCSFSHDGT-LLATGDMSGKVLVFKVSTGGEQWKLD-QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ--  180 (399)
T ss_pred             CCCceEEEEEccCce-EEEecCCCccEEEEEcccCceEEEee-cccCceEEEEecccccEEEeecCCCcEEEEECCCc--
Confidence            889999999999999 99999999999999999999888886 56678999999999999999999999999999876  


Q ss_pred             CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656           81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  160 (685)
Q Consensus        81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (685)
                        ...+.+.||..++++-.|.|+|+.++++..||+|++|+..+++....+.+                            
T Consensus       181 --~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~----------------------------  230 (399)
T KOG0296|consen  181 --ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQ----------------------------  230 (399)
T ss_pred             --ceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecc----------------------------
Confidence              56777889999999999999999999999999999999999987766642                            


Q ss_pred             cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656          161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  240 (685)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~  240 (685)
                                                             .......++.++..+..++.|..+|.+++.+..+|+.+...
T Consensus       231 ---------------------------------------~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~  271 (399)
T KOG0296|consen  231 ---------------------------------------AEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCN  271 (399)
T ss_pred             ---------------------------------------cccCcCCccccccccceeEeccCCccEEEEccccceEEEec
Confidence                                                   12345667888888899999999999999998888887666


Q ss_pred             ccccccccCCCCcCEEEEEEcCC---CCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeE
Q 005656          241 LDMSERSNYAHNGEVVGVACDST---NTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVI  317 (685)
Q Consensus       241 ~~~~~~~~~~h~~~v~~l~~~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I  317 (685)
                      ..........+...+.++.+.|.   =.+.++|+.||+|.|||+...++.....+..+|+.+.|-+ ..+|++++.+|.|
T Consensus       272 n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v  350 (399)
T KOG0296|consen  272 NGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKV  350 (399)
T ss_pred             CCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceE
Confidence            53222233356666666665554   4567899999999999999999999999999999999998 7899999999999


Q ss_pred             EEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005656          318 RLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI  365 (685)
Q Consensus       318 ~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~  365 (685)
                      +.||.++|+++.++.||...|.+++++|+.++++|+|.|++.+||+++
T Consensus       351 ~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  351 RQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            999999999999999999999999999999999999999999999875

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1e-34  Score=291.45  Aligned_cols=281  Identities=29%  Similarity=0.512  Sum_probs=252.1

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG   80 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~   80 (685)
                      |+++|++++|+|+++ ++++|+.+|.|.+|++.+++....+. .|...+..+.|+|+++.+++++.||.|++|++...  
T Consensus         8 h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~--   83 (289)
T cd00200           8 HTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLRTLK-GHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG--   83 (289)
T ss_pred             cCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEEEEe-cCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc--
Confidence            789999999999998 99999999999999999988877777 89999999999999999999999999999999875  


Q ss_pred             CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656           81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  160 (685)
Q Consensus        81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (685)
                        +....+..|...+.++.|+++++++++++.||.+++|++.+.+....+.                             
T Consensus        84 --~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----------------------------  132 (289)
T cd00200          84 --ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR-----------------------------  132 (289)
T ss_pred             --cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec-----------------------------
Confidence              4556667889999999999998888888889999999997655443331                             


Q ss_pred             cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656          161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  240 (685)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~  240 (685)
                                                             .+...+.+++++|++.++++++.+|.|++||+.++.....+
T Consensus       133 ---------------------------------------~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~  173 (289)
T cd00200         133 ---------------------------------------GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL  173 (289)
T ss_pred             ---------------------------------------cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeE
Confidence                                                   45667999999999999999988999999999988776665


Q ss_pred             ccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEe-ecCCceeEEEEeecCCEEEEEeCCCeEEE
Q 005656          241 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRW-EVGCSLVKIVYHRVNGLLATVADDLVIRL  319 (685)
Q Consensus       241 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~I~i  319 (685)
                      .        .|...+.++.|+|+++.+++++.||.|++||+.+++....+ .+...+.++.|+|++.++++++.|+.|++
T Consensus       174 ~--------~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i  245 (289)
T cd00200         174 T--------GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRV  245 (289)
T ss_pred             e--------cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEE
Confidence            4        78889999999999999999999999999999998888888 45579999999999888888888999999


Q ss_pred             EEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005656          320 FDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD  363 (685)
Q Consensus       320 ~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd  363 (685)
                      ||+.+++....+.+|...|.+++|+|++++|++++.||.|++|+
T Consensus       246 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         246 WDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             EEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            99999999999999999999999999999999999999999996

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=8.4e-37  Score=294.31  Aligned_cols=288  Identities=20%  Similarity=0.332  Sum_probs=254.6

Q ss_pred             eeeEEeecccccCeeEEEEeC-CCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCC
Q 005656           36 RLQSVIREAHDNAIISLHFFA-NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR  114 (685)
Q Consensus        36 ~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg  114 (685)
                      +.+..+. +|+..|+++.|.| .+.+|++++.|+.|+||++-...   ++++++.||..+|..++|+++|..++|+|.|+
T Consensus       205 k~~~~~~-gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~---~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~  280 (503)
T KOG0282|consen  205 KLSHNLS-GHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR---RCLRTFKGHRKPVRDASFNNCGTSFLSASFDR  280 (503)
T ss_pred             hheeecc-CCccccchhhhccceeeEEEecCCCceEEEEEEecCc---ceehhhhcchhhhhhhhccccCCeeeeeecce
Confidence            4456666 9999999999999 88899999999999999987632   89999999999999999999999999999999


Q ss_pred             ceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCcee
Q 005656          115 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI  194 (685)
Q Consensus       115 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  194 (685)
                      .|++||+++|++...+.                                                               
T Consensus       281 ~lKlwDtETG~~~~~f~---------------------------------------------------------------  297 (503)
T KOG0282|consen  281 FLKLWDTETGQVLSRFH---------------------------------------------------------------  297 (503)
T ss_pred             eeeeeccccceEEEEEe---------------------------------------------------------------
Confidence            99999999999887763                                                               


Q ss_pred             ecCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC
Q 005656          195 LRPCPENPTAVKACTISACG-NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH  273 (685)
Q Consensus       195 ~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d  273 (685)
                            ....+.|+.++|++ +.+++|+.|+.|+.||+++++.+..+.        .|-+.|..+.|-++|+++++++.|
T Consensus       298 ------~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd--------~hLg~i~~i~F~~~g~rFissSDd  363 (503)
T KOG0282|consen  298 ------LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD--------RHLGAILDITFVDEGRRFISSSDD  363 (503)
T ss_pred             ------cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH--------hhhhheeeeEEccCCceEeeeccC
Confidence                  35567899999998 899999999999999999999998886        899999999999999999999999


Q ss_pred             CeEEEEECCCCceEEEeecC--CceeEEEEeecCCEEEEEeCCCeEEEEEcCCC---eeEEEEecCC--CCeEEEEEcCC
Q 005656          274 GDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL---RMVRKFEGHT--DRITDFCFSED  346 (685)
Q Consensus       274 g~i~iwd~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~---~~~~~~~~h~--~~I~~l~~spd  346 (685)
                      ++++||+.+....+..+...  ....++..+|+++++++-+.|+.|.+|.+...   ..-..|+||.  +.-..+.||||
T Consensus       364 ks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpD  443 (503)
T KOG0282|consen  364 KSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD  443 (503)
T ss_pred             ccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCC
Confidence            99999999987766544433  56778999999999999999999999987543   2344677885  44667899999


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCceeeEEeec-cceEEEEEcCCC-CeEEEEEeCCCeEEEEE
Q 005656          347 GKWLLSSGMDGSLRIWDVILARQIDAIHVD-VSITALSLSPNM-DVLATAHVDQNGVYLWV  405 (685)
Q Consensus       347 g~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~-~~v~~v~~spdg-~~Lat~~~d~~~I~lW~  405 (685)
                      |++|++|+.||.+.+||..+-+++..+..+ .++..+.|+|-. ..+|+++.|| .|++|+
T Consensus       444 G~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G-~Ikiwd  503 (503)
T KOG0282|consen  444 GRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDG-LIKIWD  503 (503)
T ss_pred             CCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCc-eeEecC
Confidence            999999999999999999999999999887 559999999964 5789999897 999995

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.2e-36  Score=282.64  Aligned_cols=291  Identities=21%  Similarity=0.324  Sum_probs=251.3

Q ss_pred             EEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEE
Q 005656           39 SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL  118 (685)
Q Consensus        39 ~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~v  118 (685)
                      +.+. .|.+.|.-+.||++|++|||++.|.+..+|++.... ..++..++.+|..+|..+.|+||.++|++|+.|..+++
T Consensus       218 qil~-~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~-~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l  295 (519)
T KOG0293|consen  218 QILQ-DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDV-HFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL  295 (519)
T ss_pred             hhHh-hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCc-ceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence            3444 899999999999999999999999999999987653 36788899999999999999999999999999999999


Q ss_pred             EEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCC
Q 005656          119 FSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC  198 (685)
Q Consensus       119 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  198 (685)
                      ||+.++.....+..                                                                  
T Consensus       296 wDv~tgd~~~~y~~------------------------------------------------------------------  309 (519)
T KOG0293|consen  296 WDVDTGDLRHLYPS------------------------------------------------------------------  309 (519)
T ss_pred             ccCCcchhhhhccc------------------------------------------------------------------
Confidence            99999876655532                                                                  


Q ss_pred             CCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEE
Q 005656          199 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV  278 (685)
Q Consensus       199 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~i  278 (685)
                       ++...+.+++|.|||..+++|+.|+.+..||+..... .....       .....|.+++..+||+++++.+.|..|++
T Consensus       310 -~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~-~~W~g-------vr~~~v~dlait~Dgk~vl~v~~d~~i~l  380 (519)
T KOG0293|consen  310 -GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNIL-GNWEG-------VRDPKVHDLAITYDGKYVLLVTVDKKIRL  380 (519)
T ss_pred             -CcCCCcceeEEccCCceeEecCCCCcEEEecCCcchh-hcccc-------cccceeEEEEEcCCCcEEEEEecccceee
Confidence             3356789999999999999999999999999976542 22211       23356999999999999999999999999


Q ss_pred             EECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCC--eEEEEEcC-CCCEEEEEeC
Q 005656          279 WDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDR--ITDFCFSE-DGKWLLSSGM  355 (685)
Q Consensus       279 wd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~--I~~l~~sp-dg~~l~s~s~  355 (685)
                      ++..+......+..+.+|++++.+.+++++.+.-.+..|++||++..+.++.+.||...  |..-||-. +..++++||+
T Consensus       381 ~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSE  460 (519)
T KOG0293|consen  381 YNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSE  460 (519)
T ss_pred             echhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCC
Confidence            99998777767777899999999999999999999999999999999999999999764  44446654 5579999999


Q ss_pred             CCcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCC-eEEEEEeCCCeEEEEEcC
Q 005656          356 DGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMD-VLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       356 Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~-~Lat~~~d~~~I~lW~~~  407 (685)
                      |+.|+||+..+|+++..+.+|.. |++|+|+|... ++|+|+.|| +|+||.+.
T Consensus       461 D~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDg-tIRIWg~~  513 (519)
T KOG0293|consen  461 DSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDG-TIRIWGPS  513 (519)
T ss_pred             CceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCC-eEEEecCC
Confidence            99999999999999999998887 99999999765 667777665 99999754

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.6e-36  Score=281.51  Aligned_cols=284  Identities=17%  Similarity=0.322  Sum_probs=239.6

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCC---eeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR---RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT   77 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~---~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~   77 (685)
                      |++.|.-+.||++|+ +||+|+.|.+..+|++...   ++.+++. +|..+|..+.||||.++|++++.|..+++||+++
T Consensus       223 htdEVWfl~FS~nGk-yLAsaSkD~Taiiw~v~~d~~~kl~~tlv-gh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~t  300 (519)
T KOG0293|consen  223 HTDEVWFLQFSHNGK-YLASASKDSTAIIWIVVYDVHFKLKKTLV-GHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDT  300 (519)
T ss_pred             CCCcEEEEEEcCCCe-eEeeccCCceEEEEEEecCcceeeeeeee-cccCceEEEEECCCCCeEEecCchHheeeccCCc
Confidence            788999999999999 9999999999999987543   4577777 9999999999999999999999999999999998


Q ss_pred             CCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeee
Q 005656           78 TDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF  157 (685)
Q Consensus        78 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (685)
                      ++.   ......+|...+.+++|.|||..+++|+.|+++..||+.....                               
T Consensus       301 gd~---~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~-------------------------------  346 (519)
T KOG0293|consen  301 GDL---RHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNIL-------------------------------  346 (519)
T ss_pred             chh---hhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchh-------------------------------
Confidence            852   2222345678999999999999999999999999999864421                               


Q ss_pred             ecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccc
Q 005656          158 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR  237 (685)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~  237 (685)
                                             .-|..              .....|.++++++||+++++.+.|..|++|+..+...+
T Consensus       347 -----------------------~~W~g--------------vr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr  389 (519)
T KOG0293|consen  347 -----------------------GNWEG--------------VRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDR  389 (519)
T ss_pred             -----------------------hcccc--------------cccceeEEEEEcCCCcEEEEEecccceeeechhhhhhh
Confidence                                   01110              11345899999999999999999999999999887776


Q ss_pred             cccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC---CceeEEEEee-cCCEEEEEeC
Q 005656          238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHR-VNGLLATVAD  313 (685)
Q Consensus       238 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~~~-~~~~l~~~~~  313 (685)
                      ...         ....+|++++.+.+++++++.-.+..+++||+...++++.+.++   .-+..-+|-- +..++++|+.
T Consensus       390 ~li---------se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSE  460 (519)
T KOG0293|consen  390 GLI---------SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSE  460 (519)
T ss_pred             ccc---------cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCC
Confidence            544         55678999999999999999999999999999988877776654   2334444443 4469999999


Q ss_pred             CCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCC
Q 005656          314 DLVIRLFDVVALRMVRKFEGHTDRITDFCFSED-GKWLLSSGMDGSLRIWDVIL  366 (685)
Q Consensus       314 dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spd-g~~l~s~s~Dg~I~iwd~~~  366 (685)
                      |+.|+||+..+++++..+.||...|++++|+|. -..+|+||.||+||||....
T Consensus       461 D~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  461 DSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             CceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence            999999999999999999999999999999994 46889999999999998653

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=6e-36  Score=305.63  Aligned_cols=203  Identities=23%  Similarity=0.342  Sum_probs=192.9

Q ss_pred             CCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEE
Q 005656          200 ENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW  279 (685)
Q Consensus       200 ~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw  279 (685)
                      +|.++|..+.|+|+.++|++++.|+++++|.+.+......+.        +|..+|+.+.|+|.|-+++|+|.|++-++|
T Consensus       449 GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~--------GH~~PVwdV~F~P~GyYFatas~D~tArLW  520 (707)
T KOG0263|consen  449 GHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK--------GHLAPVWDVQFAPRGYYFATASHDQTARLW  520 (707)
T ss_pred             cCCCceeeeeecccccceeeccCCcceeeeecccceeEEEec--------CCCcceeeEEecCCceEEEecCCCceeeee
Confidence            899999999999999999999999999999999998888775        999999999999999999999999999999


Q ss_pred             ECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCc
Q 005656          280 DFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGS  358 (685)
Q Consensus       280 d~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~  358 (685)
                      ......+.+.+..+ +.+.|+.|+|++.++++|+.|.+|++||+.+|..++.|.||.++|++++|||+|++|++|+.||.
T Consensus       521 s~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~  600 (707)
T KOG0263|consen  521 STDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGL  600 (707)
T ss_pred             ecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCc
Confidence            99999998888877 88999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEEcCCCcC
Q 005656          359 LRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNRCMFS  411 (685)
Q Consensus       359 I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~~~~~~~  411 (685)
                      |.+||+.+|+++..+..|.. |.++.||.||..||+++.|. .|++||....+.
T Consensus       601 I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dn-sV~lWD~~~~~~  653 (707)
T KOG0263|consen  601 IKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADN-SVRLWDLTKVIE  653 (707)
T ss_pred             EEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCC-eEEEEEchhhcc
Confidence            99999999999999887765 99999999999999999995 999999765543

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=8.8e-35  Score=307.12  Aligned_cols=284  Identities=23%  Similarity=0.404  Sum_probs=252.6

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe--eeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR--LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT   78 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~   78 (685)
                      |...|+++.|+++|+ .+++++.++.+++|+..+.+  ....+. +|...|.+++|+|++.++++++.|++|++||+...
T Consensus       158 ~~~sv~~~~fs~~g~-~l~~~~~~~~i~~~~~~~~~~~~~~~l~-~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~  235 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDGR-ALAAASSDGLIRIWKLEGIKSNLLRELS-GHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD  235 (456)
T ss_pred             ccCceEEEEEcCCCC-eEEEccCCCcEEEeecccccchhhcccc-ccccceeeeEECCCCcEEEEecCCceEEEeeccCC
Confidence            356899999999999 79999999999999998777  677775 99999999999999999999999999999999322


Q ss_pred             CCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeee
Q 005656           79 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD  158 (685)
Q Consensus        79 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (685)
                      .   ..++.+.+|...|++++|+|+|+.+++|+.|++|++||+.++++...+.                           
T Consensus       236 ~---~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~---------------------------  285 (456)
T KOG0266|consen  236 G---RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK---------------------------  285 (456)
T ss_pred             C---eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee---------------------------
Confidence            1   7888999999999999999999999999999999999999988777664                           


Q ss_pred             cccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcc--
Q 005656          159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS--  236 (685)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~--  236 (685)
                                                               .|...|++++|+++|+++++++.||.|++||+.++..  
T Consensus       286 -----------------------------------------~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~  324 (456)
T KOG0266|consen  286 -----------------------------------------GHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLC  324 (456)
T ss_pred             -----------------------------------------ccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceee
Confidence                                                     7788999999999999999999999999999999984  


Q ss_pred             ccccccccccccCCCCc--CEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-C---ceeEEEEeecCCEEEE
Q 005656          237 RGSYLDMSERSNYAHNG--EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-C---SLVKIVYHRVNGLLAT  310 (685)
Q Consensus       237 ~~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~---~i~~~~~~~~~~~l~~  310 (685)
                      ...+.        .+..  .++++.|+|++.++++++.|+.+++||+..+.....+..+ .   .+.+...++.+.++++
T Consensus       325 ~~~~~--------~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s  396 (456)
T KOG0266|consen  325 LKLLS--------GAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYS  396 (456)
T ss_pred             eeccc--------CCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEE
Confidence            33332        3333  6999999999999999999999999999998888777655 2   3445566788999999


Q ss_pred             EeCCCeEEEEEcCCCeeEEEEecC-CCCeEEEEEcCCCCEEEEEe--CCCcEEEEEcC
Q 005656          311 VADDLVIRLFDVVALRMVRKFEGH-TDRITDFCFSEDGKWLLSSG--MDGSLRIWDVI  365 (685)
Q Consensus       311 ~~~dg~I~i~d~~~~~~~~~~~~h-~~~I~~l~~spdg~~l~s~s--~Dg~I~iwd~~  365 (685)
                      |+.|+.|++||+.++..+..+.+| ...+..+.++|...++++++  .|+.+++|...
T Consensus       397 g~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  397 GSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             EeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            999999999999999999999999 89999999999999999998  78999999754

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.3e-34  Score=262.99  Aligned_cols=280  Identities=20%  Similarity=0.372  Sum_probs=246.4

Q ss_pred             cccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEee
Q 005656           43 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI  122 (685)
Q Consensus        43 ~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~  122 (685)
                      .+|.+.|+.+.|+|+|.+||||+.|..|.+|++....   +-...+++|++.|..+.|.+|+..++++|.|.+++.||++
T Consensus        44 ~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc---eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~  120 (338)
T KOG0265|consen   44 PGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC---ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAE  120 (338)
T ss_pred             CCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc---cceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecc
Confidence            3999999999999999999999999999999875432   4456667999999999999999999999999999999999


Q ss_pred             cCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCC
Q 005656          123 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP  202 (685)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  202 (685)
                      +++..+...                                                                    .|.
T Consensus       121 tG~~~rk~k--------------------------------------------------------------------~h~  132 (338)
T KOG0265|consen  121 TGKRIRKHK--------------------------------------------------------------------GHT  132 (338)
T ss_pred             cceeeehhc--------------------------------------------------------------------ccc
Confidence            998776653                                                                    566


Q ss_pred             CCeEEEEEccCCC-EEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005656          203 TAVKACTISACGN-FAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF  281 (685)
Q Consensus       203 ~~v~~~~~s~~g~-~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~  281 (685)
                      ..+.+++.+.-|. .+.+|+.||++++||+++......+         ...-.++++.|...+..+++|+-|+.|++||+
T Consensus       133 ~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~---------~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~  203 (338)
T KOG0265|consen  133 SFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF---------ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDL  203 (338)
T ss_pred             ceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc---------ccceeEEEEEecccccceeeccccCceeeecc
Confidence            7777777555554 4567888999999999998888776         45678999999999999999999999999999


Q ss_pred             CCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCC----CeeEEEEecCCC----CeEEEEEcCCCCEEEE
Q 005656          282 KGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVA----LRMVRKFEGHTD----RITDFCFSEDGKWLLS  352 (685)
Q Consensus       282 ~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~----~~~~~~~~~h~~----~I~~l~~spdg~~l~s  352 (685)
                      +.......+..+ .+|+.+..+|+|.++.+-+.|.++++||++-    .+++..+.+|..    ....++|||+++.+.+
T Consensus       204 r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~a  283 (338)
T KOG0265|consen  204 RKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITA  283 (338)
T ss_pred             ccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCcccc
Confidence            999988888876 8999999999999999999999999999974    366888887654    3457899999999999


Q ss_pred             EeCCCcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEE
Q 005656          353 SGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYL  403 (685)
Q Consensus       353 ~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~l  403 (685)
                      |+.|..+++||..+...+..+.+|.. |.++.|+|...+|.+++.|. +|++
T Consensus       284 gs~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk-~i~l  334 (338)
T KOG0265|consen  284 GSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDK-TIYL  334 (338)
T ss_pred             ccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCc-eeEe
Confidence            99999999999999889888888776 99999999999999999997 7876

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=5.6e-34  Score=286.05  Aligned_cols=285  Identities=23%  Similarity=0.413  Sum_probs=251.9

Q ss_pred             EEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEE
Q 005656           39 SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL  118 (685)
Q Consensus        39 ~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~v  118 (685)
                      ..+. +|.++|++++|+|++++|++++.||.+++|++...    .......+|...+..+.|+|+++++++++.||.|++
T Consensus         3 ~~~~-~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i   77 (289)
T cd00200           3 RTLK-GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG----ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRL   77 (289)
T ss_pred             hHhc-ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCC----CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEE
Confidence            3455 89999999999999999999999999999999876    456666789999999999999999999999999999


Q ss_pred             EEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCC
Q 005656          119 FSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC  198 (685)
Q Consensus       119 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  198 (685)
                      |++.+++....+.                                                                   
T Consensus        78 ~~~~~~~~~~~~~-------------------------------------------------------------------   90 (289)
T cd00200          78 WDLETGECVRTLT-------------------------------------------------------------------   90 (289)
T ss_pred             EEcCcccceEEEe-------------------------------------------------------------------
Confidence            9997654333331                                                                   


Q ss_pred             CCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEE
Q 005656          199 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV  278 (685)
Q Consensus       199 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~i  278 (685)
                       .+...+.++.++++++++++++.+|.+.+||+.++.....+.        .|...+.+++|+|++.++++++.||.|++
T Consensus        91 -~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~l~~~~~~~~i~i  161 (289)
T cd00200          91 -GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR--------GHTDWVNSVAFSPDGTFVASSSQDGTIKL  161 (289)
T ss_pred             -ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec--------cCCCcEEEEEEcCcCCEEEEEcCCCcEEE
Confidence             445679999999999999988889999999999877666553        78889999999999998888888999999


Q ss_pred             EECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q 005656          279 WDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG  357 (685)
Q Consensus       279 wd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg  357 (685)
                      ||+++++....+..+ ..+.++.|+|+++.+++++.++.|++||+.+++.+..+..|...|.+++|+|++.++++++.||
T Consensus       162 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  241 (289)
T cd00200         162 WDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDG  241 (289)
T ss_pred             EEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCC
Confidence            999988887777655 5899999999999999999999999999999999999988999999999999998999988899


Q ss_pred             cEEEEEcCCCceeeEEeecc-ceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656          358 SLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       358 ~I~iwd~~~~~~i~~~~~~~-~v~~v~~spdg~~Lat~~~d~~~I~lW~  405 (685)
                      .|++|++.+++.+..+..+. .+.+++|+|++.+|++++.|+ .|++|+
T Consensus       242 ~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-~i~iw~  289 (289)
T cd00200         242 TIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADG-TIRIWD  289 (289)
T ss_pred             cEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCC-eEEecC
Confidence            99999999998888887554 499999999999999999987 999995

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=2e-34  Score=269.72  Aligned_cols=307  Identities=21%  Similarity=0.346  Sum_probs=245.0

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCc---EEEEecCCCcEEEEEecC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP---VLMSASADNSIKMWIFDT   77 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~---~l~s~s~D~~v~iWd~~~   77 (685)
                      |.+.|.++...  ++ .+.+|++||.+++||.. |+...++. ||.++|.+++|.-...   .++++|.|.++++|.++.
T Consensus       104 hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~-Gk~~~~~~-Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~  178 (423)
T KOG0313|consen  104 HDDWVSSVKGA--SK-WILTGSYDGTSRIWDLK-GKSIKTIV-GHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV  178 (423)
T ss_pred             chhhhhhhccc--Cc-eEEEeecCCeeEEEecC-CceEEEEe-cCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence            56777788777  45 89999999999999974 66677777 9999999998865443   599999999999999998


Q ss_pred             CCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeee
Q 005656           78 TDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF  157 (685)
Q Consensus        78 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (685)
                      +......+....||...|-+++..++|..+++|+.|.+|++|+...... ..+.......+.+....             
T Consensus       179 ~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~-~~~E~~s~~rrk~~~~~-------------  244 (423)
T KOG0313|consen  179 GENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEE-DELESSSNRRRKKQKRE-------------  244 (423)
T ss_pred             chhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCcc-ccccccchhhhhhhhhh-------------
Confidence            8776667777779999999999999999999999999999999433221 11110000000000000             


Q ss_pred             ecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccc
Q 005656          158 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR  237 (685)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~  237 (685)
                                                             ..                                ...+.+.
T Consensus       245 ---------------------------------------~~--------------------------------~~~r~P~  253 (423)
T KOG0313|consen  245 ---------------------------------------KE--------------------------------GGTRTPL  253 (423)
T ss_pred             ---------------------------------------hc--------------------------------ccccCce
Confidence                                                   00                                0001111


Q ss_pred             cccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeE
Q 005656          238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVI  317 (685)
Q Consensus       238 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I  317 (685)
                      .        ...+|..+|.++.|++ ...+++++.|.+|+.||+.++..+..+..+..+.++.++|..++|++|+.|..|
T Consensus       254 v--------tl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~i  324 (423)
T KOG0313|consen  254 V--------TLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHI  324 (423)
T ss_pred             E--------EecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCce
Confidence            1        1229999999999988 678999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCC---eeEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCc-eeeEEeeccc-eEEEEEcCCCCeE
Q 005656          318 RLFDVVAL---RMVRKFEGHTDRITDFCFSEDGK-WLLSSGMDGSLRIWDVILAR-QIDAIHVDVS-ITALSLSPNMDVL  391 (685)
Q Consensus       318 ~i~d~~~~---~~~~~~~~h~~~I~~l~~spdg~-~l~s~s~Dg~I~iwd~~~~~-~i~~~~~~~~-v~~v~~spdg~~L  391 (685)
                      ++||.+++   -...+|.||.+.|.++.|+|... .|++|+.|+++++||+++.+ ++..+..|.. |.++.|+ ++.++
T Consensus       325 rl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~I  403 (423)
T KOG0313|consen  325 RLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLI  403 (423)
T ss_pred             eecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceE
Confidence            99999876   34668899999999999999654 67899999999999999877 8888876665 9999996 46789


Q ss_pred             EEEEeCCCeEEEEEcCC
Q 005656          392 ATAHVDQNGVYLWVNRC  408 (685)
Q Consensus       392 at~~~d~~~I~lW~~~~  408 (685)
                      ++|+.|. .|+++.-..
T Consensus       404 vSGGaD~-~l~i~~~~~  419 (423)
T KOG0313|consen  404 VSGGADN-KLRIFKGSP  419 (423)
T ss_pred             EeccCcc-eEEEecccc
Confidence            9999996 999986544

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.3e-33  Score=283.45  Aligned_cols=370  Identities=15%  Similarity=0.226  Sum_probs=304.6

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG   80 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~   80 (685)
                      |++.|+..-|..+.+ ++++.+.|+.|++||+++..+..+.- .|.+.|.++++.+  +.+++++.|+.+++|++.....
T Consensus       148 Hkd~iT~~~F~~~~~-~lvS~sKDs~iK~WdL~tqhCf~Thv-d~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D  223 (888)
T KOG0306|consen  148 HKDSITQALFLNGDS-FLVSVSKDSMIKFWDLETQHCFETHV-DHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDD  223 (888)
T ss_pred             chHHHhHHhccCCCe-EEEEeccCceEEEEecccceeeeEEe-cccceEEEEEEec--ceEEEEecCCceEEEEeecccc
Confidence            777888888888666 99999999999999999999999987 9999999999997  7899999999999998821100


Q ss_pred             --------------------------------------------------------------------------------
Q 005656           81 --------------------------------------------------------------------------------   80 (685)
Q Consensus        81 --------------------------------------------------------------------------------   80 (685)
                                                                                                      
T Consensus       224 ~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v  303 (888)
T KOG0306|consen  224 EKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDV  303 (888)
T ss_pred             cccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccch
Confidence                                                                                            


Q ss_pred             -------------------------------C-----------------------Cce----eEecccCCCCCeEEEEec
Q 005656           81 -------------------------------D-----------------------PRL----LRFRSGHSAPPLCIRFYA  102 (685)
Q Consensus        81 -------------------------------~-----------------------~~~----~~~~~~h~~~v~~i~~~~  102 (685)
                                                     .                       +++    -..+.||...|.+++++.
T Consensus       304 ~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~  383 (888)
T KOG0306|consen  304 EKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSS  383 (888)
T ss_pred             hhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeec
Confidence                                           0                       000    012347888999999998


Q ss_pred             CCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEE
Q 005656          103 NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYV  182 (685)
Q Consensus       103 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (685)
                      +...++||+ .+.+++|+..+.++.+++.....                        ....--.|+..+..+...+.+.+
T Consensus       384 d~~~~~Sga-~~SikiWn~~t~kciRTi~~~y~------------------------l~~~Fvpgd~~Iv~G~k~Gel~v  438 (888)
T KOG0306|consen  384 DSILLASGA-GESIKIWNRDTLKCIRTITCGYI------------------------LASKFVPGDRYIVLGTKNGELQV  438 (888)
T ss_pred             CceeeeecC-CCcEEEEEccCcceeEEeccccE------------------------EEEEecCCCceEEEeccCCceEE
Confidence            876666654 67899999999999888864311                        01111246778888889999999


Q ss_pred             EEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCc-----cccccccccccccCCCCcCEEE
Q 005656          183 WRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI-----SRGSYLDMSERSNYAHNGEVVG  257 (685)
Q Consensus       183 w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~-----~~~~~~~~~~~~~~~h~~~v~~  257 (685)
                      +++....+-+.    .+.|.+.+.+++.+|++..+++|+.|.+|++||..--.     ....+ .........-...|.|
T Consensus       439 fdlaS~~l~Et----i~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~l-sl~~~rtLel~ddvL~  513 (888)
T KOG0306|consen  439 FDLASASLVET----IRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVL-SLKHTRTLELEDDVLC  513 (888)
T ss_pred             EEeehhhhhhh----hhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceee-eeccceEEeccccEEE
Confidence            99887655443    34789999999999999999999999999999874211     11111 1111111244578999


Q ss_pred             EEEcCCCCEEEEEECCCeEEEEECCCCceEEEee-cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCC
Q 005656          258 VACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTD  336 (685)
Q Consensus       258 l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~  336 (685)
                      +.++|++++++.+-.|.+|++|-+++.+....+- |.-||.|+..+||++++++|+.|.+|+||-++-|.+-+.+-+|..
T Consensus       514 v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdD  593 (888)
T KOG0306|consen  514 VSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDD  593 (888)
T ss_pred             EEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccC
Confidence            9999999999999999999999999988766554 458999999999999999999999999999999999999999999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656          337 RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       337 ~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~  405 (685)
                      .|.++.|-|+...+.++|.|+.|+-||-...+.++.+..|.. |+|++.+|+|.++++++.|. .|++|.
T Consensus       594 Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~-sIRlwE  662 (888)
T KOG0306|consen  594 SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDK-SIRLWE  662 (888)
T ss_pred             ceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCc-eeEeee
Confidence            999999999999999999999999999999999999986655 99999999999999999997 999996

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.9e-33  Score=296.95  Aligned_cols=289  Identities=22%  Similarity=0.416  Sum_probs=252.8

Q ss_pred             EEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEE
Q 005656           39 SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL  118 (685)
Q Consensus        39 ~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~v  118 (685)
                      ..+...|...|.++.|+++|+.+++++.|+.+++|+......  ...+.+.+|...|.+++|+|+++++++++.|++|++
T Consensus       152 ~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiri  229 (456)
T KOG0266|consen  152 QTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS--NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRI  229 (456)
T ss_pred             eeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc--hhhccccccccceeeeEECCCCcEEEEecCCceEEE
Confidence            334324578999999999999999999999999999855421  356666899999999999999999999999999999


Q ss_pred             EEee-cCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecC
Q 005656          119 FSVI-QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRP  197 (685)
Q Consensus       119 wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  197 (685)
                      ||+. .+...+.+.                                                                  
T Consensus       230 wd~~~~~~~~~~l~------------------------------------------------------------------  243 (456)
T KOG0266|consen  230 WDLKDDGRNLKTLK------------------------------------------------------------------  243 (456)
T ss_pred             eeccCCCeEEEEec------------------------------------------------------------------
Confidence            9993 335555543                                                                  


Q ss_pred             CCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEE
Q 005656          198 CPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIK  277 (685)
Q Consensus       198 ~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~  277 (685)
                        +|...|++++|+|+|+.+++|+.|+.|++||+.+++....+.        +|.+.|++++|+++++++++++.||.|+
T Consensus       244 --gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~--------~hs~~is~~~f~~d~~~l~s~s~d~~i~  313 (456)
T KOG0266|consen  244 --GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK--------GHSDGISGLAFSPDGNLLVSASYDGTIR  313 (456)
T ss_pred             --CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee--------ccCCceEEEEECCCCCEEEEcCCCccEE
Confidence              889999999999999999999999999999999998888876        9999999999999999999999999999


Q ss_pred             EEECCCCc--eEEEeecC--C-ceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCC---eEEEEEcCCCCE
Q 005656          278 VWDFKGRD--LKSRWEVG--C-SLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDR---ITDFCFSEDGKW  349 (685)
Q Consensus       278 iwd~~~~~--~~~~~~~~--~-~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~---I~~l~~spdg~~  349 (685)
                      +||+.++.  +...+...  . +++++.|+|++.++++++.|+.+++||+..+..+..+.+|...   +.+...++.+++
T Consensus       314 vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (456)
T KOG0266|consen  314 VWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKL  393 (456)
T ss_pred             EEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCe
Confidence            99999998  34444433  3 6899999999999999999999999999999999999999885   344456789999


Q ss_pred             EEEEeCCCcEEEEEcCCCceeeEEeec--cceEEEEEcCCCCeEEEEE--eCCCeEEEEEc
Q 005656          350 LLSSGMDGSLRIWDVILARQIDAIHVD--VSITALSLSPNMDVLATAH--VDQNGVYLWVN  406 (685)
Q Consensus       350 l~s~s~Dg~I~iwd~~~~~~i~~~~~~--~~v~~v~~spdg~~Lat~~--~d~~~I~lW~~  406 (685)
                      +++|+.|+.|++|++.++..+..+..+  ..+..++++|...++++++  .|+ .|++|..
T Consensus       394 i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~-~~~~w~~  453 (456)
T KOG0266|consen  394 IYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDG-LIRLWKY  453 (456)
T ss_pred             EEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCc-eEEEecC
Confidence            999999999999999999999888877  4489999999999999998  565 8999964

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=9.3e-33  Score=314.13  Aligned_cols=279  Identities=15%  Similarity=0.245  Sum_probs=230.3

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCC----e----eeEEeecccccCeeEEEEeCC-CcEEEEecCCCcEE
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR----R----LQSVIREAHDNAIISLHFFAN-EPVLMSASADNSIK   71 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~----~----~~~~~~~~h~~~V~~l~~sp~-~~~l~s~s~D~~v~   71 (685)
                      |.+.|++++|+|+|+ ++|+|+.||.|+|||+.+.    .    ....+  .+...|.+++|++. +.+|++++.||+|+
T Consensus       482 ~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~las~~~Dg~v~  558 (793)
T PLN00181        482 SSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGRDIHYPVVEL--ASRSKLSGICWNSYIKSQVASSNFEGVVQ  558 (793)
T ss_pred             CCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCcccccccccccceEEe--cccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence            678899999999999 9999999999999997542    1    12222  34578999999874 67999999999999


Q ss_pred             EEEecCCCCCCceeEecccCCCCCeEEEEec-CCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccc
Q 005656           72 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELK  150 (685)
Q Consensus        72 iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (685)
                      +||+.++    +.+..+.+|...|++++|+| ++.+|++|+.||+|++||+.++.....+.                   
T Consensus       559 lWd~~~~----~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~-------------------  615 (793)
T PLN00181        559 VWDVARS----QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK-------------------  615 (793)
T ss_pred             EEECCCC----eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe-------------------
Confidence            9999876    67778889999999999997 78899999999999999998765544331                   


Q ss_pred             cCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEc-cCCCEEEEEecCCcEEEE
Q 005656          151 LKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS-ACGNFAVLGTAGGWIERF  229 (685)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~g~~dg~i~~~  229 (685)
                                                                        ....+.++.|+ ++|.++++|+.||.|++|
T Consensus       616 --------------------------------------------------~~~~v~~v~~~~~~g~~latgs~dg~I~iw  645 (793)
T PLN00181        616 --------------------------------------------------TKANICCVQFPSESGRSLAFGSADHKVYYY  645 (793)
T ss_pred             --------------------------------------------------cCCCeEEEEEeCCCCCEEEEEeCCCeEEEE
Confidence                                                              12457888884 579999999999999999


Q ss_pred             ECCCCcc-ccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCC------ceEEEeecC-CceeEEEE
Q 005656          230 NLQSGIS-RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR------DLKSRWEVG-CSLVKIVY  301 (685)
Q Consensus       230 d~~~~~~-~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~------~~~~~~~~~-~~i~~~~~  301 (685)
                      |++++.. ...+        .+|...|.++.|. ++.++++++.|++|++||+..+      ..+..+..+ ..+.+++|
T Consensus       646 D~~~~~~~~~~~--------~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~  716 (793)
T PLN00181        646 DLRNPKLPLCTM--------IGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGL  716 (793)
T ss_pred             ECCCCCccceEe--------cCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEE
Confidence            9987653 2222        2899999999997 6789999999999999999743      455556544 67889999


Q ss_pred             eecCCEEEEEeCCCeEEEEEcCCCeeEEEE-------------ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005656          302 HRVNGLLATVADDLVIRLFDVVALRMVRKF-------------EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV  364 (685)
Q Consensus       302 ~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~-------------~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~  364 (685)
                      +|++.+|++|+.|+.|++|+......+..+             ..|...|.+++|+|++..|++|+.||.|+||++
T Consensus       717 s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        717 SVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             cCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            999999999999999999998766444322             234566999999999999999999999999996

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.4e-32  Score=312.56  Aligned_cols=303  Identities=12%  Similarity=0.182  Sum_probs=246.1

Q ss_pred             CCcEEEEeCCCCeeeEEeec----ccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCC----CceeEecccCCCCC
Q 005656           24 SGVISIWNLEKRRLQSVIRE----AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD----PRLLRFRSGHSAPP   95 (685)
Q Consensus        24 dg~I~vwd~~~~~~~~~~~~----~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~----~~~~~~~~~h~~~v   95 (685)
                      +|.+++|+..+.+....+..    +|.+.|.+++|+|++++|++|+.|+.|++|++......    ....... .+...+
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v  535 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKL  535 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCce
Confidence            67788999887665544432    48999999999999999999999999999997542110    1112222 235679


Q ss_pred             eEEEEecC-CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEE
Q 005656           96 LCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH  174 (685)
Q Consensus        96 ~~i~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (685)
                      .+++|++. +.+|++++.||+|++||+.+++....+.                                           
T Consensus       536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~-------------------------------------------  572 (793)
T PLN00181        536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMK-------------------------------------------  572 (793)
T ss_pred             eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEec-------------------------------------------
Confidence            99999874 7899999999999999998766544432                                           


Q ss_pred             cCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEcc-CCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCc
Q 005656          175 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNG  253 (685)
Q Consensus       175 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~  253 (685)
                                               .|...|.+++|+| ++.++++|+.||.|++||+.++.....+         .+..
T Consensus       573 -------------------------~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~---------~~~~  618 (793)
T PLN00181        573 -------------------------EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI---------KTKA  618 (793)
T ss_pred             -------------------------CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE---------ecCC
Confidence                                     6788899999997 7899999999999999999988776655         3346


Q ss_pred             CEEEEEEc-CCCCEEEEEECCCeEEEEECCCCc-eEEEee-cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCC------
Q 005656          254 EVVGVACD-STNTLMISAGYHGDIKVWDFKGRD-LKSRWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA------  324 (685)
Q Consensus       254 ~v~~l~~~-~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~------  324 (685)
                      .|.++.|+ +++.++++|+.||.|++||+++.+ ....+. +...|.++.|. ++.++++++.|++|++||+..      
T Consensus       619 ~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~  697 (793)
T PLN00181        619 NICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGIN  697 (793)
T ss_pred             CeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccC
Confidence            78999995 568999999999999999998765 344443 44789999997 688999999999999999974      


Q ss_pred             CeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEe--------------eccceEEEEEcCCCCe
Q 005656          325 LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH--------------VDVSITALSLSPNMDV  390 (685)
Q Consensus       325 ~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~--------------~~~~v~~v~~spdg~~  390 (685)
                      .+++..+.+|...++.++|+|++++|++|+.||.|++|+......+..+.              +...|.+++|+|++..
T Consensus       698 ~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~  777 (793)
T PLN00181        698 ETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSST  777 (793)
T ss_pred             CcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCe
Confidence            36788999999999999999999999999999999999987665443321              1123999999999999


Q ss_pred             EEEEEeCCCeEEEEEc
Q 005656          391 LATAHVDQNGVYLWVN  406 (685)
Q Consensus       391 Lat~~~d~~~I~lW~~  406 (685)
                      |++|+.|| .|+||+.
T Consensus       778 lva~~~dG-~I~i~~~  792 (793)
T PLN00181        778 LVAANSTG-NIKILEM  792 (793)
T ss_pred             EEEecCCC-cEEEEec
Confidence            99999997 8999974

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2e-33  Score=246.39  Aligned_cols=278  Identities=21%  Similarity=0.413  Sum_probs=242.5

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG   80 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~   80 (685)
                      |+|+|.++.|+-||+ +..|++.|.+|++|+...+.+++++. +|...|..++.+.|...+++++.|..+.+||++++  
T Consensus        16 ~qgaV~avryN~dGn-Y~ltcGsdrtvrLWNp~rg~liktYs-ghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TG--   91 (307)
T KOG0316|consen   16 AQGAVRAVRYNVDGN-YCLTCGSDRTVRLWNPLRGALIKTYS-GHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTG--   91 (307)
T ss_pred             cccceEEEEEccCCC-EEEEcCCCceEEeecccccceeeeec-CCCceeeeccccccccccccCCCCceEEEEEcccC--
Confidence            689999999999999 88888999999999999999999998 99999999999999999999999999999999998  


Q ss_pred             CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656           81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  160 (685)
Q Consensus        81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (685)
                        +..+.+.+|.+.|+.++|+.+...+++|+.|.++++||.++.....                                
T Consensus        92 --kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~eP--------------------------------  137 (307)
T KOG0316|consen   92 --KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEP--------------------------------  137 (307)
T ss_pred             --eeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCc--------------------------------
Confidence              8899999999999999999999999999999999999986543110                                


Q ss_pred             cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656          161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  240 (685)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~  240 (685)
                                                                                       |.++|          
T Consensus       138 -----------------------------------------------------------------iQild----------  142 (307)
T KOG0316|consen  138 -----------------------------------------------------------------IQILD----------  142 (307)
T ss_pred             -----------------------------------------------------------------cchhh----------
Confidence                                                                             11111          


Q ss_pred             ccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEE
Q 005656          241 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLF  320 (685)
Q Consensus       241 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~  320 (685)
                               .....|.++.+.  +..|++|+.||+++.||++.|.+...+ .+.+|+++.|+++++..++++-|+++++.
T Consensus       143 ---------ea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy-~g~pit~vs~s~d~nc~La~~l~stlrLl  210 (307)
T KOG0316|consen  143 ---------EAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDY-FGHPITSVSFSKDGNCSLASSLDSTLRLL  210 (307)
T ss_pred             ---------hhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhh-cCCcceeEEecCCCCEEEEeeccceeeec
Confidence                     344567777764  557999999999999999988765433 35799999999999999999999999999


Q ss_pred             EcCCCeeEEEEecCCCCe--EEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccc--eEEEEEcCCCCeEEEEEe
Q 005656          321 DVVALRMVRKFEGHTDRI--TDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHV  396 (685)
Q Consensus       321 d~~~~~~~~~~~~h~~~I--~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~--v~~v~~spdg~~Lat~~~  396 (685)
                      |-.+|+++..++||.+.-  .+.+++.....+++||+||.|++||+.....+..+..++.  |++++++|.-.-++++..
T Consensus       211 Dk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~  290 (307)
T KOG0316|consen  211 DKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG  290 (307)
T ss_pred             ccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC
Confidence            999999999999998764  4567777778999999999999999999999999987766  799999999888888864


Q ss_pred             CCCeEEEEE
Q 005656          397 DQNGVYLWV  405 (685)
Q Consensus       397 d~~~I~lW~  405 (685)
                      .  .+..|-
T Consensus       291 ~--~~~~~~  297 (307)
T KOG0316|consen  291 H--GDLFWY  297 (307)
T ss_pred             C--ceecee
Confidence            4  678884

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=2.3e-34  Score=277.55  Aligned_cols=281  Identities=18%  Similarity=0.292  Sum_probs=244.1

Q ss_pred             CCCcEEEEEEcc-CCCCEEEEEeCCCcEEEEeCCC-CeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCC
Q 005656            1 MRGAVTALAFSS-DGQPLLASGASSGVISIWNLEK-RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT   78 (685)
Q Consensus         1 h~~~V~~l~fsp-dg~~~latg~~dg~I~vwd~~~-~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~   78 (685)
                      |+..|+++.|.| .+. +|++|+.|+.|+||++-. +++++++. +|..+|..++|+++|..++|+|.|+.+++||++++
T Consensus       213 H~kgvsai~~fp~~~h-LlLS~gmD~~vklW~vy~~~~~lrtf~-gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG  290 (503)
T KOG0282|consen  213 HTKGVSAIQWFPKKGH-LLLSGGMDGLVKLWNVYDDRRCLRTFK-GHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETG  290 (503)
T ss_pred             Cccccchhhhccceee-EEEecCCCceEEEEEEecCcceehhhh-cchhhhhhhhccccCCeeeeeecceeeeeeccccc
Confidence            788999999999 666 999999999999999876 89999998 99999999999999999999999999999999998


Q ss_pred             CCCCceeEecccCCCCCeEEEEecCC-CEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeee
Q 005656           79 DGDPRLLRFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF  157 (685)
Q Consensus        79 ~~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (685)
                          +++..+ .-...++|+.|+|++ +.+++|+.|+.|+.||+++++.+.++.                          
T Consensus       291 ----~~~~~f-~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd--------------------------  339 (503)
T KOG0282|consen  291 ----QVLSRF-HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD--------------------------  339 (503)
T ss_pred             ----eEEEEE-ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH--------------------------
Confidence                555544 345678999999998 889999999999999999998666553                          


Q ss_pred             ecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccc
Q 005656          158 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR  237 (685)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~  237 (685)
                                                                .|-+.|..+.|-++|..+++.+.++.+++|+.+.+..+
T Consensus       340 ------------------------------------------~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~i  377 (503)
T KOG0282|consen  340 ------------------------------------------RHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPI  377 (503)
T ss_pred             ------------------------------------------hhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccc
Confidence                                                      55678999999999999999999999999999988776


Q ss_pred             cccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc---eEEEeec---CCceeEEEEeecCCEEEEE
Q 005656          238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD---LKSRWEV---GCSLVKIVYHRVNGLLATV  311 (685)
Q Consensus       238 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~---~~~~~~~---~~~i~~~~~~~~~~~l~~~  311 (685)
                      .....       .+.-...++..+|++.+++.-+.|..|.++.+...-   ....+..   .+-...+.|||||.+|++|
T Consensus       378 k~i~~-------~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SG  450 (503)
T KOG0282|consen  378 KNIAD-------PEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSG  450 (503)
T ss_pred             hhhcc-------hhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEee
Confidence            65432       344456688999999999999999999999865321   1222333   2566789999999999999


Q ss_pred             eCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEE
Q 005656          312 ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIWD  363 (685)
Q Consensus       312 ~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg-~~l~s~s~Dg~I~iwd  363 (685)
                      ..||.+.+||.++-+.+..+++|.+++..+.|+|.. ..+|+|+.||.|++|+
T Consensus       451 dsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  451 DSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             cCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            999999999999999999999999999999999954 5899999999999996

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=2.8e-34  Score=265.06  Aligned_cols=275  Identities=19%  Similarity=0.321  Sum_probs=237.0

Q ss_pred             CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCC
Q 005656            3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP   82 (685)
Q Consensus         3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~   82 (685)
                      ..|.|+.+..+   .+++|..|++|+|||.++..+...+. ||++.|.|+.|.  .+.+++||.|.+|++||++++    
T Consensus       198 kgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~~L~-GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tg----  267 (499)
T KOG0281|consen  198 KGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLKILT-GHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTG----  267 (499)
T ss_pred             CceEEEEecch---hhhcccccCceEEeccccHHHHHhhh-cCCCcEEeeecc--ceEEEecCCCceEEEEeccCC----
Confidence            56889988742   68999999999999999999999998 999999999996  569999999999999999998    


Q ss_pred             ceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccc
Q 005656           83 RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI  162 (685)
Q Consensus        83 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (685)
                      +++.++-+|...|..+.|+.  .++++++.|.++.+||+........                                 
T Consensus       268 e~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~---------------------------------  312 (499)
T KOG0281|consen  268 EPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITL---------------------------------  312 (499)
T ss_pred             chhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHH---------------------------------
Confidence            78888889999999999974  4999999999999999865431110                                 


Q ss_pred             cccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccc
Q 005656          163 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD  242 (685)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~  242 (685)
                                                      .....+|...|..+.|+.  +++++++.|.+|++|++.++..+..+. 
T Consensus       313 --------------------------------rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW~~st~efvRtl~-  357 (499)
T KOG0281|consen  313 --------------------------------RRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTSTCEFVRTLN-  357 (499)
T ss_pred             --------------------------------HHHHhhhhhheeeecccc--ceEEEecCCceEEEEeccceeeehhhh-
Confidence                                            001116777888888865  599999999999999999999998876 


Q ss_pred             ccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEE
Q 005656          243 MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFD  321 (685)
Q Consensus       243 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d  321 (685)
                             +|...|.|+.+  .++++++|+.|.+|++||+..|.+++.++++ .-|.++.|.  .+.+++|+.||+|+|||
T Consensus       358 -------gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWd  426 (499)
T KOG0281|consen  358 -------GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWD  426 (499)
T ss_pred             -------cccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEe
Confidence                   99999999886  5789999999999999999999999998876 678888885  78999999999999999


Q ss_pred             cCCCe---------eEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcee
Q 005656          322 VVALR---------MVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI  370 (685)
Q Consensus       322 ~~~~~---------~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i  370 (685)
                      +.++.         ++..+..|++.|..+.|  |...+++++.|.+|.|||+..+..-
T Consensus       427 l~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~  482 (499)
T KOG0281|consen  427 LQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPS  482 (499)
T ss_pred             cccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence            98763         34556679999999999  7788999999999999999877543

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2e-32  Score=280.79  Aligned_cols=335  Identities=18%  Similarity=0.267  Sum_probs=272.7

Q ss_pred             CCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCC
Q 005656            2 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD   81 (685)
Q Consensus         2 ~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~   81 (685)
                      +..|..++|+|... ++.++-.+|.|++||..-+.++..+. .|+++|..++|+|.+++++|||.|..|++|++...   
T Consensus         9 SsRvKglsFHP~rP-wILtslHsG~IQlWDYRM~tli~rFd-eHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r---   83 (1202)
T KOG0292|consen    9 SSRVKGLSFHPKRP-WILTSLHSGVIQLWDYRMGTLIDRFD-EHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR---   83 (1202)
T ss_pred             cccccceecCCCCC-EEEEeecCceeeeehhhhhhHHhhhh-ccCCccceeeecCCCCeEEecCCccEEEEEecccc---
Confidence            35788999999876 99999999999999999999999998 99999999999999999999999999999999988   


Q ss_pred             CceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccc
Q 005656           82 PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE  161 (685)
Q Consensus        82 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (685)
                       +++.++.||-.-|..+.|++.-.+|+|+|.|.+|+||+..+..++..+.                              
T Consensus        84 -rclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt------------------------------  132 (1202)
T KOG0292|consen   84 -RCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT------------------------------  132 (1202)
T ss_pred             -eehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe------------------------------
Confidence             8888999999999999999999999999999999999999888877664                              


Q ss_pred             ccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccc
Q 005656          162 IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYL  241 (685)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~  241 (685)
                                                            +|...|.|..|+|....+++++-|-+|++||+..-+....-+
T Consensus       133 --------------------------------------GHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~p  174 (1202)
T KOG0292|consen  133 --------------------------------------GHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAP  174 (1202)
T ss_pred             --------------------------------------cCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCC
Confidence                                                  788899999999999999999999999999986422211111


Q ss_pred             c---------------------ccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCce--EEEee-cCCcee
Q 005656          242 D---------------------MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDL--KSRWE-VGCSLV  297 (685)
Q Consensus       242 ~---------------------~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~-~~~~i~  297 (685)
                      .                     .......+|...|+.++|+|.-..+++|+.|..|++|.+...+.  +.+.. |-.+|.
T Consensus       175 g~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVs  254 (1202)
T KOG0292|consen  175 GSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVS  254 (1202)
T ss_pred             CCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcc
Confidence            0                     00113458999999999999999999999999999999875432  22333 348999


Q ss_pred             EEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCce--------
Q 005656          298 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ--------  369 (685)
Q Consensus       298 ~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~--------  369 (685)
                      ++.|+|...++++.+.|++|+|||+...+.+++|+...++-+.++.+|..+++++|- |+-+.||-+..-++        
T Consensus       255 svlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgH-DsGm~VFkleRErpa~~v~~n~  333 (1202)
T KOG0292|consen  255 SVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGH-DSGMIVFKLERERPAYAVNGNG  333 (1202)
T ss_pred             eEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeec-CCceEEEEEcccCceEEEcCCE
Confidence            999999999999999999999999999999999998888999999999998777665 44455565442111        


Q ss_pred             ---------------------eeEEeec----cceEEEEEcCCCC-eEEEEEeCCCeEEEEEcCCCcC
Q 005656          370 ---------------------IDAIHVD----VSITALSLSPNMD-VLATAHVDQNGVYLWVNRCMFS  411 (685)
Q Consensus       370 ---------------------i~~~~~~----~~v~~v~~spdg~-~Lat~~~d~~~I~lW~~~~~~~  411 (685)
                                           +..++..    .++.+++++|... .|+++..+.+..-++.....+.
T Consensus       334 LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~  401 (1202)
T KOG0292|consen  334 LFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSD  401 (1202)
T ss_pred             EEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCccc
Confidence                                 1112222    3478899999755 4555555554555665554443

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.3e-33  Score=275.22  Aligned_cols=279  Identities=18%  Similarity=0.296  Sum_probs=250.1

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG   80 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~   80 (685)
                      |+..|.|+.|+|... ++.++-.+|.|.|||.++...+..+. ...-+|++..|-+..+++++|+.|..|+||++++.  
T Consensus        12 rSdRVKsVd~HPteP-w~la~LynG~V~IWnyetqtmVksfe-V~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~--   87 (794)
T KOG0276|consen   12 RSDRVKSVDFHPTEP-WILAALYNGDVQIWNYETQTMVKSFE-VSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG--   87 (794)
T ss_pred             cCCceeeeecCCCCc-eEEEeeecCeeEEEecccceeeeeee-ecccchhhheeeeccceEEEecCCceEEEEecccc--
Confidence            567899999999987 88889999999999999999999998 78899999999999999999999999999999988  


Q ss_pred             CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656           81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  160 (685)
Q Consensus        81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (685)
                        +.+..+..|..-|.+++.+|...+++++|.|-+|++||.+..-.                                  
T Consensus        88 --ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa----------------------------------  131 (794)
T KOG0276|consen   88 --EKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWA----------------------------------  131 (794)
T ss_pred             --eeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCcee----------------------------------
Confidence              77888999999999999999999999999999999999753310                                  


Q ss_pred             cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656          161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  240 (685)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~  240 (685)
                                                                                                 +.+.|
T Consensus       132 ---------------------------------------------------------------------------~~qtf  136 (794)
T KOG0276|consen  132 ---------------------------------------------------------------------------CEQTF  136 (794)
T ss_pred             ---------------------------------------------------------------------------eeeEE
Confidence                                                                                       00111


Q ss_pred             ccccccccCCCCcCEEEEEEcCC-CCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecCC--EEEEEeCCCe
Q 005656          241 LDMSERSNYAHNGEVVGVACDST-NTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNG--LLATVADDLV  316 (685)
Q Consensus       241 ~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~--~l~~~~~dg~  316 (685)
                              .+|...|.+++|+|. .+.+++++.|++|++|.+....+..++..+ ..|+|+.|-+.|.  +|++|++|.+
T Consensus       137 --------eGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~t  208 (794)
T KOG0276|consen  137 --------EGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLT  208 (794)
T ss_pred             --------cCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCce
Confidence                    289999999999995 578999999999999999998888888765 8899999998664  9999999999


Q ss_pred             EEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEE
Q 005656          317 IRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAH  395 (685)
Q Consensus       317 I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~  395 (685)
                      |+|||.++..+++++.||...|+.++|+|.-.+++|||.||+||||+-.+.++...+..... ++|++-.+.+..+++|.
T Consensus       209 iKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~  288 (794)
T KOG0276|consen  209 IKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGF  288 (794)
T ss_pred             EEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEec
Confidence            99999999999999999999999999999999999999999999999999999888876655 99999999888888887


Q ss_pred             eCCCeEEE
Q 005656          396 VDQNGVYL  403 (685)
Q Consensus       396 ~d~~~I~l  403 (685)
                      ..| .|.+
T Consensus       289 Deg-~i~v  295 (794)
T KOG0276|consen  289 DEG-SVTV  295 (794)
T ss_pred             cCC-cEEE
Confidence            654 5544

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=8.7e-34  Score=250.71  Aligned_cols=285  Identities=20%  Similarity=0.327  Sum_probs=254.7

Q ss_pred             CCCcEEEEEEcc---CCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecC
Q 005656            1 MRGAVTALAFSS---DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT   77 (685)
Q Consensus         1 h~~~V~~l~fsp---dg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~   77 (685)
                      |+.||-.++|||   +|- +|++++.||.-.+-+-++|.-+.++. +|.+.|.+...+.+...-++++.|-+-++||.-+
T Consensus        13 htrpvvdl~~s~itp~g~-flisa~kd~~pmlr~g~tgdwigtfe-ghkgavw~~~l~~na~~aasaaadftakvw~a~t   90 (334)
T KOG0278|consen   13 HTRPVVDLAFSPITPDGY-FLISASKDGKPMLRNGDTGDWIGTFE-GHKGAVWSATLNKNATRAASAAADFTAKVWDAVT   90 (334)
T ss_pred             CCcceeEEeccCCCCCce-EEEEeccCCCchhccCCCCCcEEeee-ccCcceeeeecCchhhhhhhhcccchhhhhhhhh
Confidence            788999999986   675 99999999999999999999999999 9999999999999988999999999999999887


Q ss_pred             CCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeee
Q 005656           78 TDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF  157 (685)
Q Consensus        78 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (685)
                      ++    .+..+ .|..-|.+++|+.|.++|++|+.+..+|+||+...+...                             
T Consensus        91 gd----elhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App-----------------------------  136 (334)
T KOG0278|consen   91 GD----ELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPP-----------------------------  136 (334)
T ss_pred             hh----hhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCc-----------------------------
Confidence            73    44444 688899999999999999999999999999986543211                             


Q ss_pred             ecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccc
Q 005656          158 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR  237 (685)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~  237 (685)
                                                            ....+|.+.|+.+.|....+.+++.+.|+.|++||.+++..+
T Consensus       137 --------------------------------------~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v  178 (334)
T KOG0278|consen  137 --------------------------------------KEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEV  178 (334)
T ss_pred             --------------------------------------hhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEE
Confidence                                                  111278899999999999999999999999999999999998


Q ss_pred             cccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeE
Q 005656          238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVI  317 (685)
Q Consensus       238 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I  317 (685)
                      .++         ....+|+++.++++|+++.+ ...+.|++||..+..++..+..+..|.+...+|+...+++|+.|+.+
T Consensus       179 ~sL---------~~~s~VtSlEvs~dG~ilTi-a~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~  248 (334)
T KOG0278|consen  179 QSL---------EFNSPVTSLEVSQDGRILTI-AYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKV  248 (334)
T ss_pred             EEE---------ecCCCCcceeeccCCCEEEE-ecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEE
Confidence            887         56678999999999986554 45689999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCeeEEEE-ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCce
Q 005656          318 RLFDVVALRMVRKF-EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ  369 (685)
Q Consensus       318 ~i~d~~~~~~~~~~-~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~  369 (685)
                      +.||..++..+..+ ++|.++|.|+.|+|||...++||.||+|++|.+..++.
T Consensus       249 ~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  249 YKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             EEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence            99999999999886 89999999999999999999999999999999876654

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=4.4e-32  Score=241.75  Aligned_cols=278  Identities=17%  Similarity=0.207  Sum_probs=245.9

Q ss_pred             EeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecC-CCEEEEEeCCCceEE
Q 005656           40 VIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRL  118 (685)
Q Consensus        40 ~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~dg~i~v  118 (685)
                      .++ +|.+.|.+++|+.+|..|++|+.|+++++|+++...  ...-....+|.+.|-.++|+|. ...+++++.|.+|++
T Consensus        15 ~~~-~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r--~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~   91 (313)
T KOG1407|consen   15 ELQ-GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDR--FRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRI   91 (313)
T ss_pred             Hhh-hhhhcceEEEEcccCceeeecccCCceEEEEecchh--hhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEE
Confidence            344 899999999999999999999999999999998762  1222345789999999999885 678999999999999


Q ss_pred             EEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCC
Q 005656          119 FSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC  198 (685)
Q Consensus       119 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  198 (685)
                      ||++.+++.....                                                                   
T Consensus        92 wd~r~~k~~~~i~-------------------------------------------------------------------  104 (313)
T KOG1407|consen   92 WDIRSGKCTARIE-------------------------------------------------------------------  104 (313)
T ss_pred             EEeccCcEEEEee-------------------------------------------------------------------
Confidence            9999998776652                                                                   


Q ss_pred             CCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEE
Q 005656          199 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV  278 (685)
Q Consensus       199 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~i  278 (685)
                        ....-.-++|+|+|+++++|..|..|..+|.++.+.....         ...-.+..++|+.++.+++.....|+|.|
T Consensus       105 --~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~---------~~~~e~ne~~w~~~nd~Fflt~GlG~v~I  173 (313)
T KOG1407|consen  105 --TKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE---------QFKFEVNEISWNNSNDLFFLTNGLGCVEI  173 (313)
T ss_pred             --ccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehh---------cccceeeeeeecCCCCEEEEecCCceEEE
Confidence              2334456789999999999999999999999988777655         44566888999988887777777799999


Q ss_pred             EECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q 005656          279 WDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG  357 (685)
Q Consensus       279 wd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg  357 (685)
                      ......+++..+..+ ....|+.|+|+|+++|+|+.|..+.+||++..-+++.+..+.-+|..+.||.||++||+||+|.
T Consensus       174 LsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh  253 (313)
T KOG1407|consen  174 LSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDH  253 (313)
T ss_pred             EeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccc
Confidence            999999998888755 8889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCC
Q 005656          358 SLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ  398 (685)
Q Consensus       358 ~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~  398 (685)
                      .|-|=++++|..+..+.+.++...|+|+|...+||.++.|.
T Consensus       254 ~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk  294 (313)
T KOG1407|consen  254 FIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDK  294 (313)
T ss_pred             eEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCC
Confidence            99999999999999999999999999999999999999875

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=8e-33  Score=247.19  Aligned_cols=291  Identities=17%  Similarity=0.252  Sum_probs=242.2

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG   80 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~   80 (685)
                      |..|++.+.|+.+|. +|.+++.|..+.||-..+|+.+.++. ||++.|.|+...-+.+.|+||+.|.++++||+.++  
T Consensus         9 HERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGty~-GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG--   84 (327)
T KOG0643|consen    9 HERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGTYD-GHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG--   84 (327)
T ss_pred             CccccceEEecCCCc-EEEEecCCCCceEEEecCCceeeeec-CCCceEEEEEecCCcceeeeccccceeEEEEcCCC--
Confidence            788999999999999 99999999999999999999999998 99999999999999999999999999999999998  


Q ss_pred             CCceeEecccCCCCCeEEEEecCCCEEEEEeC-----CCceEEEEeecCceeeEechhhHHHHHhhccccccccccCcee
Q 005656           81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ-----DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI  155 (685)
Q Consensus        81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (685)
                        +.+..+ .-..+|..+.|+++|++++.+..     .+.|.++|++.......-                         
T Consensus        85 --k~la~~-k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s-------------------------  136 (327)
T KOG0643|consen   85 --KQLATW-KTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDS-------------------------  136 (327)
T ss_pred             --cEEEEe-ecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcc-------------------------
Confidence              666665 35678999999999998887653     467888887644310000                         


Q ss_pred             eeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCc
Q 005656          156 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI  235 (685)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~  235 (685)
                                                          +......+.+.+.++.+.|.|.+.++++|..+|.|..||+++|.
T Consensus       137 ------------------------------------~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~  180 (327)
T KOG0643|consen  137 ------------------------------------EEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGK  180 (327)
T ss_pred             ------------------------------------cCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCc
Confidence                                                00000111345789999999999999999999999999999986


Q ss_pred             cccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCC
Q 005656          236 SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDL  315 (685)
Q Consensus       236 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  315 (685)
                      ......       ..|...|+.++++++..++++++.|.+-++||+.+...+.++....|+++.+++|....++.|+...
T Consensus       181 ~~v~s~-------~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqe  253 (327)
T KOG0643|consen  181 ELVDSD-------EEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQE  253 (327)
T ss_pred             eeeech-------hhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCce
Confidence            654432       2799999999999999999999999999999999999999999999999999999888777765422


Q ss_pred             e--------------EEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005656          316 V--------------IRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL  366 (685)
Q Consensus       316 ~--------------I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~  366 (685)
                      .              -++|++-..+.+...+||-++|++++|+|+|+-.++|+.||.||+.-+..
T Consensus       254 A~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  254 AMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             eeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence            1              22333333345677889999999999999999999999999999986654

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.3e-31  Score=240.17  Aligned_cols=290  Identities=16%  Similarity=0.241  Sum_probs=231.1

Q ss_pred             eeEEeecccccCeeEEEEeCC-CcEEEEecCCCcEEEEEecCCCCCCceeEec-ccCCCCCeEEEEecCCCEEEEEeCCC
Q 005656           37 LQSVIREAHDNAIISLHFFAN-EPVLMSASADNSIKMWIFDTTDGDPRLLRFR-SGHSAPPLCIRFYANGRHILSAGQDR  114 (685)
Q Consensus        37 ~~~~~~~~h~~~V~~l~~sp~-~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~-~~h~~~v~~i~~~~~~~~l~s~s~dg  114 (685)
                      .++.+. +|.+.|..++|+|. |..|||+|.|+.|++|+...+ ....+...+ .+|...|.+++|+|.|++|++|+.|.
T Consensus         6 ~~~~~~-gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~-~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~   83 (312)
T KOG0645|consen    6 LEQKLS-GHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSG-DSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA   83 (312)
T ss_pred             eEEeec-CCCCcEEEEEeccCCceEEEeecCCceEEEEecCCC-CcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence            345666 99999999999998 889999999999999988752 223333332 47999999999999999999999999


Q ss_pred             ceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCcee
Q 005656          115 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI  194 (685)
Q Consensus       115 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  194 (685)
                      ++.||.-..+....                                                                  
T Consensus        84 t~~Iw~k~~~efec------------------------------------------------------------------   97 (312)
T KOG0645|consen   84 TVVIWKKEDGEFEC------------------------------------------------------------------   97 (312)
T ss_pred             eEEEeecCCCceeE------------------------------------------------------------------
Confidence            99999765443211                                                                  


Q ss_pred             ecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCC
Q 005656          195 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG  274 (685)
Q Consensus       195 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg  274 (685)
                      .....+|...|.|++|+++|++|++++.|..|.+|.+..+.......     ...+|...|..+.|+|...+|+++|.|.
T Consensus        98 v~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~a-----VL~~HtqDVK~V~WHPt~dlL~S~SYDn  172 (312)
T KOG0645|consen   98 VATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIA-----VLQEHTQDVKHVIWHPTEDLLFSCSYDN  172 (312)
T ss_pred             EeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEe-----eeccccccccEEEEcCCcceeEEeccCC
Confidence            11223889999999999999999999999999999998654433221     2338999999999999999999999999


Q ss_pred             eEEEEECC-C--CceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEE
Q 005656          275 DIKVWDFK-G--RDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWL  350 (685)
Q Consensus       275 ~i~iwd~~-~--~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l  350 (685)
                      +|++|+-. .  -.+.+++..+ ..+.+++|++.|..|+++++|++++||-..+.-    -.-|...+..+.|.  ...|
T Consensus       173 TIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v~W~--~~~I  246 (312)
T KOG0645|consen  173 TIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL----SGMHSRALYDVPWD--NGVI  246 (312)
T ss_pred             eEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc----chhcccceEeeeec--ccce
Confidence            99999877 2  3566777665 589999999999999999999999999755221    12378899999997  4589


Q ss_pred             EEEeCCCcEEEEEcCCC------ceeeEE--eeccceEEEEEcCC-CCeEEEEEeCCCeEEEEEc
Q 005656          351 LSSGMDGSLRIWDVILA------RQIDAI--HVDVSITALSLSPN-MDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       351 ~s~s~Dg~I~iwd~~~~------~~i~~~--~~~~~v~~v~~spd-g~~Lat~~~d~~~I~lW~~  406 (685)
                      ++++.|+.|++|....+      +++...  .+...|+++.|.|. ...|++++.|| .|++|.+
T Consensus       247 aS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG-~v~~W~l  310 (312)
T KOG0645|consen  247 ASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDG-IVNFWEL  310 (312)
T ss_pred             EeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCc-eEEEEEe
Confidence            99999999999976542      111111  23335999999995 67888888886 9999975

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=5e-32  Score=271.69  Aligned_cols=395  Identities=20%  Similarity=0.297  Sum_probs=281.4

Q ss_pred             CCCcEEEEEEccCCCCEEEEEe--CCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecC--CCcEEEEE--
Q 005656            1 MRGAVTALAFSSDGQPLLASGA--SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA--DNSIKMWI--   74 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~--~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~--D~~v~iWd--   74 (685)
                      |+.+++|++||++|+ ++|||-  ....++||++.....+..+. .|...|+|++|+|.++++++.+.  |-.|.+||  
T Consensus        77 sRk~~t~vAfS~~Gr-yvatGEcG~~pa~kVw~la~h~vVAEfv-dHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr  154 (1080)
T KOG1408|consen   77 SRKPLTCVAFSQNGR-YVATGECGRTPASKVWSLAFHGVVAEFV-DHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWR  154 (1080)
T ss_pred             cCcceeEEEEcCCCc-EEEecccCCCccceeeeeccccchhhhh-hccccceeeeecCCCcEEEeeccccceEEEhhhhh
Confidence            567899999999999 999985  56789999999988888887 89999999999999998887554  33444453  


Q ss_pred             --------------------------------------ecCCCCC--Cc-------------------------------
Q 005656           75 --------------------------------------FDTTDGD--PR-------------------------------   83 (685)
Q Consensus        75 --------------------------------------~~~~~~~--~~-------------------------------   83 (685)
                                                            ++.+..-  +.                               
T Consensus       155 ~N~~~asnkiss~Vsav~fsEdgSYfvT~gnrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAest  234 (1080)
T KOG1408|consen  155 VNSSGASNKISSVVSAVAFSEDGSYFVTSGNRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAEST  234 (1080)
T ss_pred             hcccccccccceeEEEEEEccCCceeeeeeeeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccce
Confidence                                                  3322100  00                               


Q ss_pred             eeEecccC-----------------CCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHH-------H
Q 005656           84 LLRFRSGH-----------------SAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKR-------A  139 (685)
Q Consensus        84 ~~~~~~~h-----------------~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-------~  139 (685)
                      ...+..||                 ....+||+.+  .++|+.|+.+|.|++|+..+-....++...+....       .
T Consensus       235 fait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~  312 (1080)
T KOG1408|consen  235 FAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQP  312 (1080)
T ss_pred             EEEecccceeeechhhhhhhhhhhhccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccc
Confidence            00000111                 1122344443  56899999999999999888776666654432211       1


Q ss_pred             hhccccccccccCceeeeecccccc----------------c-----------------CC------------------c
Q 005656          140 RKLKMKEEELKLKPVIAFDCAEIRE----------------R-----------------DW------------------C  168 (685)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------~-----------------~~------------------~  168 (685)
                      ..+.......++|..++......+.                +                 -|                  .
T Consensus       313 ~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~  392 (1080)
T KOG1408|consen  313 EPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPR  392 (1080)
T ss_pred             cccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCc
Confidence            1111111222333332222221110                0                 01                  0


Q ss_pred             ceEEEEcCCceEEEEEcCccccCce----e-----------------------------ecCCCCCCCCeEEEEEccCCC
Q 005656          169 NVVTCHMDTAQAYVWRLQNFVLGEH----I-----------------------------LRPCPENPTAVKACTISACGN  215 (685)
Q Consensus       169 ~~~~~~~~~~~~~~w~~~~~~~~~~----~-----------------------------~~~~~~~~~~v~~~~~s~~g~  215 (685)
                      ..++....++.+++|++.....+..    +                             ....-.....+++++++|+|+
T Consensus       393 ~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq  472 (1080)
T KOG1408|consen  393 GCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ  472 (1080)
T ss_pred             cceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcc
Confidence            1233444567788887765222111    0                             000112245699999999999


Q ss_pred             EEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCC---CCEEEEEECCCeEEEEECCCC-ceEEEee
Q 005656          216 FAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST---NTLMISAGYHGDIKVWDFKGR-DLKSRWE  291 (685)
Q Consensus       216 ~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~~~l~s~s~dg~i~iwd~~~~-~~~~~~~  291 (685)
                      +|++|...|.+++|++++-.....+.        +|...|.|+.++.-   .++|++++.|..|.+||+... .+++++.
T Consensus       473 hLAsGDr~GnlrVy~Lq~l~~~~~~e--------AHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld  544 (1080)
T KOG1408|consen  473 HLASGDRGGNLRVYDLQELEYTCFME--------AHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLD  544 (1080)
T ss_pred             eecccCccCceEEEEehhhhhhhhee--------cccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhc
Confidence            99999999999999999887776665        99999999999753   478999999999999998632 1111110


Q ss_pred             --------------------------------------------------cCCceeEEEEeecCCEEEEEeCCCeEEEEE
Q 005656          292 --------------------------------------------------VGCSLVKIVYHRVNGLLATVADDLVIRLFD  321 (685)
Q Consensus       292 --------------------------------------------------~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d  321 (685)
                                                                        .+..+..|+..|..+++++++.|..|+|||
T Consensus       545 ~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~  624 (1080)
T KOG1408|consen  545 GHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFD  624 (1080)
T ss_pred             ccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEe
Confidence                                                              013466788888889999999999999999


Q ss_pred             cCCCeeEEEEec---CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeC
Q 005656          322 VVALRMVRKFEG---HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVD  397 (685)
Q Consensus       322 ~~~~~~~~~~~~---h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d  397 (685)
                      +.+++.++.|+|   |.+....+...|.|-||++...|.++.++|+.+|+++....+|+. |+.+.|++|.+.|++++.|
T Consensus       625 i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgD  704 (1080)
T KOG1408|consen  625 IESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGD  704 (1080)
T ss_pred             ccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCC
Confidence            999999999985   667788999999999999999999999999999999999988887 9999999999999999999


Q ss_pred             CCeEEEEEcCC
Q 005656          398 QNGVYLWVNRC  408 (685)
Q Consensus       398 ~~~I~lW~~~~  408 (685)
                      | .|+||.+..
T Consensus       705 g-CIFvW~lp~  714 (1080)
T KOG1408|consen  705 G-CIFVWKLPL  714 (1080)
T ss_pred             c-eEEEEECch
Confidence            8 999997543

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.6e-33  Score=257.69  Aligned_cols=282  Identities=21%  Similarity=0.377  Sum_probs=250.8

Q ss_pred             CCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEee-------cccccCeeEEEEeCCCcEEEEecCCCcEEEEE
Q 005656            2 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR-------EAHDNAIISLHFFANEPVLMSASADNSIKMWI   74 (685)
Q Consensus         2 ~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~-------~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd   74 (685)
                      ++.+-|..|||||+ +|++|+.||.|.|||..+|++..-++       --|+.+|.|+.|+.|...|++|+.||.|++|.
T Consensus       213 KSh~EcA~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWr  291 (508)
T KOG0275|consen  213 KSHVECARFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWR  291 (508)
T ss_pred             ccchhheeeCCCCc-eEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEE
Confidence            34578999999999 99999999999999999998765443       14788999999999999999999999999999


Q ss_pred             ecCCCCCCceeEecc-cCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCc
Q 005656           75 FDTTDGDPRLLRFRS-GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKP  153 (685)
Q Consensus        75 ~~~~~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (685)
                      +.++    .+++.+. .|...|+|+.|+.|+..+++++.|.++|+.-+.++++.+++.                      
T Consensus       292 i~tG----~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr----------------------  345 (508)
T KOG0275|consen  292 IETG----QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR----------------------  345 (508)
T ss_pred             Eecc----hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc----------------------
Confidence            9998    5665544 899999999999999999999999999999998888777664                      


Q ss_pred             eeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCC
Q 005656          154 VIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS  233 (685)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~  233 (685)
                                                                    +|.+.|....|+++|++++++++||+|++|+..+
T Consensus       346 ----------------------------------------------GHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Kt  379 (508)
T KOG0275|consen  346 ----------------------------------------------GHSSYVNEATFTDDGHHIISASSDGTVKVWHGKT  379 (508)
T ss_pred             ----------------------------------------------CccccccceEEcCCCCeEEEecCCccEEEecCcc
Confidence                                                          7889999999999999999999999999999999


Q ss_pred             CccccccccccccccCCCCcCEEEEEEcCCC-CEEEEEECCCeEEEEECCCCceEEEeecC----CceeEEEEeecCCEE
Q 005656          234 GISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRWEVG----CSLVKIVYHRVNGLL  308 (685)
Q Consensus       234 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~----~~i~~~~~~~~~~~l  308 (685)
                      ..+..+|..      .+..-+|..+..-|.+ ..+++|...++|++.++. |+.++.+..+    +...+++.+|.|.++
T Consensus       380 teC~~Tfk~------~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewi  452 (508)
T KOG0275|consen  380 TECLSTFKP------LGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWI  452 (508)
T ss_pred             hhhhhhccC------CCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEE
Confidence            999988853      2556688888887765 678899999999999986 5666666543    677888999999999


Q ss_pred             EEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005656          309 ATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD  363 (685)
Q Consensus       309 ~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd  363 (685)
                      ++.+.|+.++.|...+|+.-+++.-|...|..++-+|..+.||+-+.||.+++|.
T Consensus       453 YcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  453 YCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             EEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence            9999999999999999999999999999999999999999999999999999994

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=7.4e-34  Score=262.30  Aligned_cols=270  Identities=22%  Similarity=0.363  Sum_probs=227.7

Q ss_pred             cccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecC
Q 005656           45 HDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQD  124 (685)
Q Consensus        45 h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~  124 (685)
                      ...+|+|+.+.  ...+++|..|++|+|||.+.-    .++..+.||++.|.|+.|.  .+.+++|+.|.+|++||+.++
T Consensus       196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~----~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tg  267 (499)
T KOG0281|consen  196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSL----ECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTG  267 (499)
T ss_pred             cCCceEEEEec--chhhhcccccCceEEeccccH----HHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCC
Confidence            35689999985  568999999999999998776    7788889999999999995  569999999999999999999


Q ss_pred             ceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCC
Q 005656          125 QQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTA  204 (685)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  204 (685)
                      +....+-                                                                    .|...
T Consensus       268 e~l~tli--------------------------------------------------------------------hHcea  279 (499)
T KOG0281|consen  268 EPLNTLI--------------------------------------------------------------------HHCEA  279 (499)
T ss_pred             chhhHHh--------------------------------------------------------------------hhcce
Confidence            8766553                                                                    56777


Q ss_pred             eEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 005656          205 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR  284 (685)
Q Consensus       205 v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~  284 (685)
                      |..+.|+  .+++++++.|.++.+||+.+.......     +...+|...|..+.|+  .+++++++.|.+|++|++.++
T Consensus       280 VLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~r-----rVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~  350 (499)
T KOG0281|consen  280 VLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLR-----RVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTC  350 (499)
T ss_pred             eEEEEEe--CCEEEEecCCceeEEEeccCchHHHHH-----HHHhhhhhheeeeccc--cceEEEecCCceEEEEeccce
Confidence            8888876  579999999999999999876532211     1233999999999986  459999999999999999999


Q ss_pred             ceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005656          285 DLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD  363 (685)
Q Consensus       285 ~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd  363 (685)
                      ..++++..+ ..|.|+.+.  ++++++|+.|.+|++||+..|.+++.+.||..-|.++.|  |.+.+++|+.||+|+|||
T Consensus       351 efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWd  426 (499)
T KOG0281|consen  351 EFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWD  426 (499)
T ss_pred             eeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEe
Confidence            999998876 678887775  899999999999999999999999999999999999999  778999999999999999


Q ss_pred             cCCCcee---------eEEe-eccceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656          364 VILARQI---------DAIH-VDVSITALSLSPNMDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       364 ~~~~~~i---------~~~~-~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~  406 (685)
                      +.++...         ..+. +.+.|..+.|  |...+++++.|+ +|-||+.
T Consensus       427 l~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHdd-tILiWdF  476 (499)
T KOG0281|consen  427 LQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDD-TILIWDF  476 (499)
T ss_pred             cccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCC-eEEEEEc
Confidence            9876432         2222 3345999999  556777777776 9999983

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.5e-32  Score=280.13  Aligned_cols=279  Identities=19%  Similarity=0.316  Sum_probs=247.7

Q ss_pred             ccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeec
Q 005656           44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ  123 (685)
Q Consensus        44 ~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~  123 (685)
                      .....|.+++|+|..++++++-..|.|++||+..+    .++..+..|.+||..+.|+|.+..++|||.|-.|+||+..+
T Consensus         7 skSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~----tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~   82 (1202)
T KOG0292|consen    7 SKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMG----TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT   82 (1202)
T ss_pred             cccccccceecCCCCCEEEEeecCceeeeehhhhh----hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc
Confidence            45678999999999999999999999999999888    78888899999999999999999999999999999999988


Q ss_pred             CceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCC
Q 005656          124 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT  203 (685)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  203 (685)
                      .++..++.                                                                    +|..
T Consensus        83 rrclftL~--------------------------------------------------------------------GHlD   94 (1202)
T KOG0292|consen   83 RRCLFTLL--------------------------------------------------------------------GHLD   94 (1202)
T ss_pred             ceehhhhc--------------------------------------------------------------------cccc
Confidence            77665553                                                                    8889


Q ss_pred             CeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005656          204 AVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG  283 (685)
Q Consensus       204 ~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~  283 (685)
                      .|+.+.|++.-.+++++++|-+|++||.+++.++..+.        +|...|.|..|+|....++++|.|.+|++||+..
T Consensus        95 YVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt--------GHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisG  166 (1202)
T KOG0292|consen   95 YVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT--------GHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISG  166 (1202)
T ss_pred             eeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe--------cCceEEEeeccCCccceEEEecccceEEEEeecc
Confidence            99999999999999999999999999999999998876        9999999999999999999999999999999864


Q ss_pred             Cce-----------------------------EEEee-cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCe--eEEEE
Q 005656          284 RDL-----------------------------KSRWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALR--MVRKF  331 (685)
Q Consensus       284 ~~~-----------------------------~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~--~~~~~  331 (685)
                      .+.                             ...+. |...|+.++|+|.-.++++|++|..|++|.+..-+  .+-+.
T Consensus       167 LRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtc  246 (1202)
T KOG0292|consen  167 LRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTC  246 (1202)
T ss_pred             hhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhh
Confidence            211                             11222 23678999999999999999999999999987544  35667


Q ss_pred             ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeecc-ceEEEEEcCCCCeEEEEEeCCCeEEEE
Q 005656          332 EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLW  404 (685)
Q Consensus       332 ~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~-~v~~v~~spdg~~Lat~~~d~~~I~lW  404 (685)
                      +||.+.|+++-|+|...+++|.|.|++|+|||+...+.+++++... .-+.++-+|..+++|+|+..|  +.+|
T Consensus       247 rgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsG--m~VF  318 (1202)
T KOG0292|consen  247 RGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSG--MIVF  318 (1202)
T ss_pred             hcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCc--eEEE
Confidence            8999999999999999999999999999999999999999997654 499999999999999998554  4444

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.1e-31  Score=263.89  Aligned_cols=236  Identities=19%  Similarity=0.278  Sum_probs=214.3

Q ss_pred             CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCC
Q 005656            3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP   82 (685)
Q Consensus         3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~   82 (685)
                      -||.+..|-+..+ ++++|+.|..|+||+.++++.+..+. +|.+-|+|++.+|..++++|+|.|-+|++||++..   +
T Consensus        56 ~PvRa~kfiaRkn-Wiv~GsDD~~IrVfnynt~ekV~~Fe-AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~---w  130 (794)
T KOG0276|consen   56 VPVRAAKFIARKN-WIVTGSDDMQIRVFNYNTGEKVKTFE-AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE---W  130 (794)
T ss_pred             cchhhheeeeccc-eEEEecCCceEEEEecccceeeEEee-ccccceeeeeecCCCCeEEecCCccEEEEeeccCc---e
Confidence            3677888888776 99999999999999999999999998 99999999999999999999999999999999764   4


Q ss_pred             ceeEecccCCCCCeEEEEecC-CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccc
Q 005656           83 RLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE  161 (685)
Q Consensus        83 ~~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (685)
                      .+..++.||..-|.+++|+|. .+.+++++-|++|++|++.+.....++.                              
T Consensus       131 a~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~------------------------------  180 (794)
T KOG0276|consen  131 ACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLE------------------------------  180 (794)
T ss_pred             eeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeee------------------------------
Confidence            788889999999999999994 7799999999999999998777666654                              


Q ss_pred             ccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCC--CEEEEEecCCcEEEEECCCCccccc
Q 005656          162 IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG--NFAVLGTAGGWIERFNLQSGISRGS  239 (685)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~g~~dg~i~~~d~~~~~~~~~  239 (685)
                                                            +|...|.|+++-+-|  .++++|+.|..|++||.++..++.+
T Consensus       181 --------------------------------------gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~T  222 (794)
T KOG0276|consen  181 --------------------------------------GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQT  222 (794)
T ss_pred             --------------------------------------ccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHH
Confidence                                                  788899999998754  6999999999999999999999998


Q ss_pred             cccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEE
Q 005656          240 YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIR  318 (685)
Q Consensus       240 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~  318 (685)
                      +.        +|...|..+.|+|.-..+++|+.||+++||+..+-++..++..+ ..+.|++..+.++.+++|.+.|.|.
T Consensus       223 Le--------GHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~  294 (794)
T KOG0276|consen  223 LE--------GHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT  294 (794)
T ss_pred             hh--------cccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE
Confidence            86        99999999999999999999999999999999998888887766 8899999999999999999888765


Q ss_pred             E
Q 005656          319 L  319 (685)
Q Consensus       319 i  319 (685)
                      +
T Consensus       295 v  295 (794)
T KOG0276|consen  295 V  295 (794)
T ss_pred             E
Confidence            4

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=2.8e-32  Score=241.14  Aligned_cols=281  Identities=16%  Similarity=0.264  Sum_probs=249.1

Q ss_pred             cccccCeeEEEEeC---CCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEE
Q 005656           43 EAHDNAIISLHFFA---NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF  119 (685)
Q Consensus        43 ~~h~~~V~~l~~sp---~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vw  119 (685)
                      .+|+.+|..++|+|   +|-+|++++.|+.-.+-+-+++    .-+.++.||.+.|++.....+...-++++.|-+-++|
T Consensus        11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg----dwigtfeghkgavw~~~l~~na~~aasaaadftakvw   86 (334)
T KOG0278|consen   11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG----DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVW   86 (334)
T ss_pred             cCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCC----CcEEeeeccCcceeeeecCchhhhhhhhcccchhhhh
Confidence            39999999999986   7889999999998877765665    5677888999999999999888888999999999999


Q ss_pred             EeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCC
Q 005656          120 SVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCP  199 (685)
Q Consensus       120 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  199 (685)
                      |..++.....+                                                                     
T Consensus        87 ~a~tgdelhsf---------------------------------------------------------------------   97 (334)
T KOG0278|consen   87 DAVTGDELHSF---------------------------------------------------------------------   97 (334)
T ss_pred             hhhhhhhhhhh---------------------------------------------------------------------
Confidence            99888766655                                                                     


Q ss_pred             CCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEE
Q 005656          200 ENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW  279 (685)
Q Consensus       200 ~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw  279 (685)
                      .|...|.+++|+.|.++|++|+.+..+++||++.......       ...+|.+.|..+.|....+.|++++.|++|++|
T Consensus        98 ~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~-------E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLW  170 (334)
T KOG0278|consen   98 EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPK-------EISGHTGGIRTVLWCHEDKCILSSADDKTVRLW  170 (334)
T ss_pred             hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCch-------hhcCCCCcceeEEEeccCceEEeeccCCceEEE
Confidence            5667799999999999999999999999999987655433       223999999999999999999999999999999


Q ss_pred             ECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 005656          280 DFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSL  359 (685)
Q Consensus       280 d~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I  359 (685)
                      |.+++..++++..+.+++++.++++|++|.++. .+.|.+||..+-.+++.++ -...|.+...+|+...+++|+.|+.+
T Consensus       171 D~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~  248 (334)
T KOG0278|consen  171 DHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKV  248 (334)
T ss_pred             EeccCcEEEEEecCCCCcceeeccCCCEEEEec-CceeEEeccccccceeecc-CccccccccccCCCceEEecCcceEE
Confidence            999999999999999999999999999887664 4689999999998888876 44569999999999999999999999


Q ss_pred             EEEEcCCCceeeEE-e-eccceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656          360 RIWDVILARQIDAI-H-VDVSITALSLSPNMDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       360 ~iwd~~~~~~i~~~-~-~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~  406 (685)
                      +.||..+|..+..+ + ++++|.||.|+|||..-|+|+.|| +|+||..
T Consensus       249 ~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDG-TirlWQt  296 (334)
T KOG0278|consen  249 YKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDG-TIRLWQT  296 (334)
T ss_pred             EEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCc-eEEEEEe
Confidence            99999999999886 3 566799999999999999999998 9999974

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.1e-32  Score=252.89  Aligned_cols=250  Identities=18%  Similarity=0.279  Sum_probs=224.8

Q ss_pred             eeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCce
Q 005656           37 LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAF  116 (685)
Q Consensus        37 ~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i  116 (685)
                      +...+. +|..+|+.+-|+|+-.++++++.|++|++||..++    .+.+.++||...|..|+|+..|+++++++.|-.+
T Consensus       100 l~~~l~-g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg----~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~  174 (406)
T KOG0295|consen  100 LVQKLA-GHRSSVTRVIFHPSEALVVSASEDATIKVFDTETG----ELERSLRGHTDSVFDISFDASGKYLATCSSDLSA  174 (406)
T ss_pred             chhhhh-ccccceeeeeeccCceEEEEecCCceEEEEEccch----hhhhhhhccccceeEEEEecCccEEEecCCccch
Confidence            444555 89999999999999999999999999999999988    6788899999999999999999999999999999


Q ss_pred             EEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeec
Q 005656          117 RLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR  196 (685)
Q Consensus       117 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  196 (685)
                      ++||..+...                                                                      
T Consensus       175 ~LWd~~~~~~----------------------------------------------------------------------  184 (406)
T KOG0295|consen  175 KLWDFDTFFR----------------------------------------------------------------------  184 (406)
T ss_pred             hheeHHHHHH----------------------------------------------------------------------
Confidence            9999754210                                                                      


Q ss_pred             CCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeE
Q 005656          197 PCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDI  276 (685)
Q Consensus       197 ~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i  276 (685)
                                                             ++.        ...+|...|.+++|-|.|.++++++.|.+|
T Consensus       185 ---------------------------------------c~k--------s~~gh~h~vS~V~f~P~gd~ilS~srD~ti  217 (406)
T KOG0295|consen  185 ---------------------------------------CIK--------SLIGHEHGVSSVFFLPLGDHILSCSRDNTI  217 (406)
T ss_pred             ---------------------------------------HHH--------HhcCcccceeeEEEEecCCeeeecccccce
Confidence                                                   000        112888999999999999999999999999


Q ss_pred             EEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCC---------
Q 005656          277 KVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSED---------  346 (685)
Q Consensus       277 ~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spd---------  346 (685)
                      +.|++.++-++.++..+ ..+..+..+.||.++|+++.|.++++|-+.++++...+++|..+|-+++|.|.         
T Consensus       218 k~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~a  297 (406)
T KOG0295|consen  218 KAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEA  297 (406)
T ss_pred             eEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhc
Confidence            99999999999999876 77889999999999999999999999999999999999999999999999773         


Q ss_pred             ------CCEEEEEeCCCcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEEcCCC
Q 005656          347 ------GKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNRCM  409 (685)
Q Consensus       347 ------g~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~~~~~  409 (685)
                            +.++.+++.|++|++||+.+|.++.++.+|.. |..++|+|-|+||+++..|+ ++++|+.+..
T Consensus       298 t~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDk-tlrvwdl~~~  366 (406)
T KOG0295|consen  298 TGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDK-TLRVWDLKNL  366 (406)
T ss_pred             cCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCC-cEEEEEeccc
Confidence                  25999999999999999999999999998877 99999999999999999887 9999997654

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=8.8e-32  Score=245.10  Aligned_cols=289  Identities=21%  Similarity=0.338  Sum_probs=240.8

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCC-----------------C-eeeEEeecccccCeeEEEEeCCCcEEE
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEK-----------------R-RLQSVIREAHDNAIISLHFFANEPVLM   62 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~-----------------~-~~~~~~~~~h~~~V~~l~~sp~~~~l~   62 (685)
                      |++++.+-+|+|||. ++|||+.|-+|+|.|++.                 + ..++++. .|.++|+++.|+|...+|+
T Consensus       111 HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlY-DH~devn~l~FHPre~ILi  188 (430)
T KOG0640|consen  111 HKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLY-DHVDEVNDLDFHPRETILI  188 (430)
T ss_pred             cccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehh-hccCcccceeecchhheEE
Confidence            899999999999999 999999999999999871                 1 2355665 8999999999999999999


Q ss_pred             EecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhc
Q 005656           63 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKL  142 (685)
Q Consensus        63 s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  142 (685)
                      +|+.|++|+++|+.....+ +..+.+ ....+|.++.|+|.|.+|+.|....++++||+.+-++.....           
T Consensus       189 S~srD~tvKlFDfsK~saK-rA~K~~-qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan-----------  255 (430)
T KOG0640|consen  189 SGSRDNTVKLFDFSKTSAK-RAFKVF-QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN-----------  255 (430)
T ss_pred             eccCCCeEEEEecccHHHH-HHHHHh-hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC-----------
Confidence            9999999999999765321 222222 356789999999999999999999999999998876533221           


Q ss_pred             cccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec
Q 005656          143 KMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA  222 (685)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~  222 (685)
                                                                            +...|...|+++.+++.|+..++|+.
T Consensus       256 ------------------------------------------------------Pd~qht~ai~~V~Ys~t~~lYvTaSk  281 (430)
T KOG0640|consen  256 ------------------------------------------------------PDDQHTGAITQVRYSSTGSLYVTASK  281 (430)
T ss_pred             ------------------------------------------------------cccccccceeEEEecCCccEEEEecc
Confidence                                                                  22378899999999999999999999


Q ss_pred             CCcEEEEECCCCccccccccccccccCCCCc-CEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCC------c
Q 005656          223 GGWIERFNLQSGISRGSYLDMSERSNYAHNG-EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGC------S  295 (685)
Q Consensus       223 dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~------~  295 (685)
                      ||.|++||--+++++.++..       +|.+ .|.+..|..++++++++|.|..+++|.+.+++++..+...+      -
T Consensus       282 DG~IklwDGVS~rCv~t~~~-------AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~  354 (430)
T KOG0640|consen  282 DGAIKLWDGVSNRCVRTIGN-------AHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKH  354 (430)
T ss_pred             CCcEEeeccccHHHHHHHHh-------hcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhh
Confidence            99999999999999988864       6765 68899999999999999999999999999999998887541      1


Q ss_pred             eeEEEEeecCCEEEEEeC-CCeEEEEEcCCCeeEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005656          296 LVKIVYHRVNGLLATVAD-DLVIRLFDVVALRMVRKFE-GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI  365 (685)
Q Consensus       296 i~~~~~~~~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~-~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~  365 (685)
                      -+...|+....+++.-.. .+.+.-||.+++..+..+. ||++.+..+.-||.+.-+++||.|-.+|+|--.
T Consensus       355 rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  355 RTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             hhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence            234456655666555433 4688999999887666553 899999999999999999999999999999643

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=1.6e-32  Score=259.60  Aligned_cols=276  Identities=19%  Similarity=0.348  Sum_probs=242.4

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe--eeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR--LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT   78 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~   78 (685)
                      |.|.|..+.|-++.. .|++|+.|..|.+|++...+  .+.++. |-.++|+++.|.++++.+++++.|+.+++|+++..
T Consensus       174 h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~~~~tLa-Gs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~  251 (459)
T KOG0288|consen  174 HEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSELISTLA-GSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSL  251 (459)
T ss_pred             cccccceeEEccCcc-hhhhcchhhhhhhhhcccchhhhhhhhh-ccCCCcceeeecCCCceEEeecCCCceeeeeccch
Confidence            789999999999866 79999999999999998776  677777 88899999999999999999999999999999887


Q ss_pred             CCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeee
Q 005656           79 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD  158 (685)
Q Consensus        79 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (685)
                          +...++.||...|+++.|......+++|+.|.+|+.||+....+.+++-                           
T Consensus       252 ----r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l---------------------------  300 (459)
T KOG0288|consen  252 ----RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL---------------------------  300 (459)
T ss_pred             ----hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc---------------------------
Confidence                8889999999999999999877679999999999999998776655442                           


Q ss_pred             cccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccc
Q 005656          159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG  238 (685)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~  238 (685)
                                                                ....+..++.+  +..+++|..|+.|++||+++.....
T Consensus       301 ------------------------------------------~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~  336 (459)
T KOG0288|consen  301 ------------------------------------------PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTR  336 (459)
T ss_pred             ------------------------------------------ccccccceEec--ceeeeecccccceEEEeccCCceee
Confidence                                                      12223333333  5678889999999999999998887


Q ss_pred             ccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-----CceeEEEEeecCCEEEEEeC
Q 005656          239 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-----CSLVKIVYHRVNGLLATVAD  313 (685)
Q Consensus       239 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~  313 (685)
                      ..         .-.+.|+++..++++..+.+++.|.++.+.|+++......+...     +..+.+.|||++.|+++|+.
T Consensus       337 sv---------~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~  407 (459)
T KOG0288|consen  337 SV---------PLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSA  407 (459)
T ss_pred             Ee---------ecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccC
Confidence            76         34459999999999999999999999999999999888877643     66889999999999999999


Q ss_pred             CCeEEEEEcCCCeeEEEEecCCCC--eEEEEEcCCCCEEEEEeCCCcEEEE
Q 005656          314 DLVIRLFDVVALRMVRKFEGHTDR--ITDFCFSEDGKWLLSSGMDGSLRIW  362 (685)
Q Consensus       314 dg~I~i~d~~~~~~~~~~~~h~~~--I~~l~~spdg~~l~s~s~Dg~I~iw  362 (685)
                      ||.|+||++.++++...+......  |++++|+|.|..|++++.++.+.+|
T Consensus       408 dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  408 DGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             CCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence            999999999999999988765544  9999999999999999999999999

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=4.7e-32  Score=248.14  Aligned_cols=290  Identities=19%  Similarity=0.282  Sum_probs=253.4

Q ss_pred             EEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCC----ceeEecccCCCCCeEEEEecCCCEEEEEeCCC
Q 005656           39 SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP----RLLRFRSGHSAPPLCIRFYANGRHILSAGQDR  114 (685)
Q Consensus        39 ~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~----~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg  114 (685)
                      +.++.+....+.|..|+|||++|++|+.||-|.+|++.++.-..    +....+.-+..+|.|+.|+.|...+++|+.||
T Consensus       206 r~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDG  285 (508)
T KOG0275|consen  206 RSIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDG  285 (508)
T ss_pred             hheecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCC
Confidence            34445677889999999999999999999999999998763211    11122345788999999999999999999999


Q ss_pred             ceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCcee
Q 005656          115 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI  194 (685)
Q Consensus       115 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  194 (685)
                      .|++|.+.++.+.+.+..                                                              
T Consensus       286 kIKvWri~tG~ClRrFdr--------------------------------------------------------------  303 (508)
T KOG0275|consen  286 KIKVWRIETGQCLRRFDR--------------------------------------------------------------  303 (508)
T ss_pred             cEEEEEEecchHHHHhhh--------------------------------------------------------------
Confidence            999999999998877643                                                              


Q ss_pred             ecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCC
Q 005656          195 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG  274 (685)
Q Consensus       195 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg  274 (685)
                           .|...|+|+.||.|+..+++++.|..+++.-+.+|+....+.        +|++.|+...|.++|..+++++.||
T Consensus       304 -----AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr--------GHsSyvn~a~ft~dG~~iisaSsDg  370 (508)
T KOG0275|consen  304 -----AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR--------GHSSYVNEATFTDDGHHIISASSDG  370 (508)
T ss_pred             -----hhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc--------CccccccceEEcCCCCeEEEecCCc
Confidence                 567889999999999999999999999999999999998886        9999999999999999999999999


Q ss_pred             eEEEEECCCCceEEEeecC---CceeEEEEeecCC-EEEEEeCCCeEEEEEcCCCeeEEEEec---CCCCeEEEEEcCCC
Q 005656          275 DIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNG-LLATVADDLVIRLFDVVALRMVRKFEG---HTDRITDFCFSEDG  347 (685)
Q Consensus       275 ~i~iwd~~~~~~~~~~~~~---~~i~~~~~~~~~~-~l~~~~~dg~I~i~d~~~~~~~~~~~~---h~~~I~~l~~spdg  347 (685)
                      +|++|+.++.+++.++...   .+|..+..-|.+. .++++...++|+|.++. |+.++.|..   ..+...+.+.||.|
T Consensus       371 tvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkG  449 (508)
T KOG0275|consen  371 TVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKG  449 (508)
T ss_pred             cEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCC
Confidence            9999999999999888764   6788888887665 88888889999999975 788888864   23456777899999


Q ss_pred             CEEEEEeCCCcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656          348 KWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       348 ~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~  405 (685)
                      .|+.+.+.|+.++.|.+.+|++-..+..+.. |..++-+|..+.||+-+.|| .+++|.
T Consensus       450 ewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDg-llKLWk  507 (508)
T KOG0275|consen  450 EWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDG-LLKLWK  507 (508)
T ss_pred             cEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccc-hhhhcC
Confidence            9999999999999999999999999987766 99999999999999999998 899994

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2e-31  Score=247.35  Aligned_cols=248  Identities=19%  Similarity=0.303  Sum_probs=222.7

Q ss_pred             eeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCce
Q 005656           37 LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAF  116 (685)
Q Consensus        37 ~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i  116 (685)
                      +.+.+. +|.+.|.|+++.|...+++||+.|++++|||+.++    ++..++.||...|..+++++-..|+++++.|+.|
T Consensus       143 l~rVi~-gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg----~LkltltGhi~~vr~vavS~rHpYlFs~gedk~V  217 (460)
T KOG0285|consen  143 LYRVIS-GHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG----QLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQV  217 (460)
T ss_pred             ehhhhh-hccceEEEEeeCCCceeEEecCCCceeEEEEcccC----eEEEeecchhheeeeeeecccCceEEEecCCCee
Confidence            344555 99999999999999999999999999999999998    8888999999999999999999999999999999


Q ss_pred             EEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeec
Q 005656          117 RLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR  196 (685)
Q Consensus       117 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  196 (685)
                      +.||++..+.++.+                                                                  
T Consensus       218 KCwDLe~nkvIR~Y------------------------------------------------------------------  231 (460)
T KOG0285|consen  218 KCWDLEYNKVIRHY------------------------------------------------------------------  231 (460)
T ss_pred             EEEechhhhhHHHh------------------------------------------------------------------
Confidence            99999766533222                                                                  


Q ss_pred             CCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeE
Q 005656          197 PCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDI  276 (685)
Q Consensus       197 ~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i  276 (685)
                                                                          .+|-+.|.|++.+|.-..|++|+.|.++
T Consensus       232 ----------------------------------------------------hGHlS~V~~L~lhPTldvl~t~grDst~  259 (460)
T KOG0285|consen  232 ----------------------------------------------------HGHLSGVYCLDLHPTLDVLVTGGRDSTI  259 (460)
T ss_pred             ----------------------------------------------------ccccceeEEEeccccceeEEecCCcceE
Confidence                                                                2899999999999999999999999999


Q ss_pred             EEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeC
Q 005656          277 KVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM  355 (685)
Q Consensus       277 ~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~  355 (685)
                      ++||+++...+..+..+ .+|..+.+.|-...+++|+.|++|++||+..|+...++..|...|.+++.+|.-..+|++|.
T Consensus       260 RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~  339 (460)
T KOG0285|consen  260 RVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASP  339 (460)
T ss_pred             EEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCC
Confidence            99999999999988855 89999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEEcCCCc
Q 005656          356 DGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNRCMF  410 (685)
Q Consensus       356 Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~~~~~~  410 (685)
                      |. |+-|+++.|..+..+..+.. +++++...|| ++++|+.+| .+.+|+-+..+
T Consensus       340 dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng-~~~fwdwksg~  392 (460)
T KOG0285|consen  340 DN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNG-SIMFWDWKSGH  392 (460)
T ss_pred             cc-ceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCce-EEEEEecCcCc
Confidence            85 99999999999999887777 8899988776 566676665 99999966543

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.8e-32  Score=258.67  Aligned_cols=240  Identities=21%  Similarity=0.360  Sum_probs=212.1

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG   80 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~   80 (685)
                      |.++|+++.|+++|. ++++|+.+|.|++|+..-.. +..++..|...|++++|+|+...++|+|.||+|+|||+...  
T Consensus       137 HDs~Vr~m~ws~~g~-wmiSgD~gG~iKyWqpnmnn-Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~--  212 (464)
T KOG0284|consen  137 HDSPVRTMKWSHNGT-WMISGDKGGMIKYWQPNMNN-VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP--  212 (464)
T ss_pred             hcccceeEEEccCCC-EEEEcCCCceEEecccchhh-hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC--
Confidence            889999999999999 99999999999999976544 33444366699999999999999999999999999998876  


Q ss_pred             CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656           81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  160 (685)
Q Consensus        81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (685)
                        +.-+.+.||...|.++.|+|.-..|+++|.|..|++||.+++.++.++.                             
T Consensus       213 --kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh-----------------------------  261 (464)
T KOG0284|consen  213 --KEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLH-----------------------------  261 (464)
T ss_pred             --chhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhh-----------------------------
Confidence              4445558999999999999998899999999999999999998766553                             


Q ss_pred             cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656          161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  240 (685)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~  240 (685)
                                                             .|...|..+.|++++++|++++.|..+++||+++.+....+
T Consensus       262 ---------------------------------------~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~  302 (464)
T KOG0284|consen  262 ---------------------------------------GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTY  302 (464)
T ss_pred             ---------------------------------------hccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHh
Confidence                                                   78899999999999999999999999999999987777776


Q ss_pred             ccccccccCCCCcCEEEEEEcCCC-CEEEEEECCCeEEEEECCCCceEEEee--cCCceeEEEEeecCCEEEEEeCCCeE
Q 005656          241 LDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRWE--VGCSLVKIVYHRVNGLLATVADDLVI  317 (685)
Q Consensus       241 ~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~I  317 (685)
                      .        +|...|+++.|+|-. .+|.+|+.||.|..|.+...+++..+.  +...|.+++|+|-|.+|++|+.|.++
T Consensus       303 r--------~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~  374 (464)
T KOG0284|consen  303 R--------GHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTV  374 (464)
T ss_pred             h--------cchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcce
Confidence            5        899999999999975 578889999999999998666665554  45899999999999999999999999


Q ss_pred             EEEEc
Q 005656          318 RLFDV  322 (685)
Q Consensus       318 ~i~d~  322 (685)
                      ++|.-
T Consensus       375 rfw~r  379 (464)
T KOG0284|consen  375 RFWTR  379 (464)
T ss_pred             eeecc
Confidence            99964

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=5.4e-32  Score=255.97  Aligned_cols=285  Identities=22%  Similarity=0.384  Sum_probs=249.2

Q ss_pred             eEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceE
Q 005656           38 QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFR  117 (685)
Q Consensus        38 ~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~  117 (685)
                      ...+. .|.+.|..+.|-++...|++|+.|..|++|++....  ...+.++.|..++|+++.|.++++++++++.|+.++
T Consensus       168 ~~~ld-~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k--~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r  244 (459)
T KOG0288|consen  168 LFVLD-AHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK--SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLR  244 (459)
T ss_pred             hhhhh-ccccccceeEEccCcchhhhcchhhhhhhhhcccch--hhhhhhhhccCCCcceeeecCCCceEEeecCCCcee
Confidence            33444 899999999999999999999999999999887653  356778889999999999999999999999999999


Q ss_pred             EEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecC
Q 005656          118 LFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRP  197 (685)
Q Consensus       118 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  197 (685)
                      +|++...+...++.                                                                  
T Consensus       245 ~Wnvd~~r~~~TLs------------------------------------------------------------------  258 (459)
T KOG0288|consen  245 LWNVDSLRLRHTLS------------------------------------------------------------------  258 (459)
T ss_pred             eeeccchhhhhhhc------------------------------------------------------------------
Confidence            99998776655553                                                                  


Q ss_pred             CCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEE
Q 005656          198 CPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIK  277 (685)
Q Consensus       198 ~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~  277 (685)
                        +|...|+++.|......++.|+.|.+|+.||++...+..++.         ....+..|+.+  ...+++|-.|++|+
T Consensus       259 --GHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l---------~~S~cnDI~~~--~~~~~SgH~DkkvR  325 (459)
T KOG0288|consen  259 --GHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL---------PGSQCNDIVCS--ISDVISGHFDKKVR  325 (459)
T ss_pred             --ccccceeeehhhccccceeeccccchhhhhhhhhhheecccc---------ccccccceEec--ceeeeecccccceE
Confidence              788999999999888889999999999999999988877653         33455666665  45688888999999


Q ss_pred             EEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecC----CCCeEEEEEcCCCCEEEEE
Q 005656          278 VWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH----TDRITDFCFSEDGKWLLSS  353 (685)
Q Consensus       278 iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h----~~~I~~l~~spdg~~l~s~  353 (685)
                      +||.++..+......++.|+++..++++..+.+++.|.++.+.|+++.+....+...    ....+.+.|||++.|+++|
T Consensus       326 fwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAG  405 (459)
T KOG0288|consen  326 FWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAG  405 (459)
T ss_pred             EEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeec
Confidence            999999999999999999999999999999999999999999999999888887642    2348899999999999999


Q ss_pred             eCCCcEEEEEcCCCceeeEEeecc---ceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656          354 GMDGSLRIWDVILARQIDAIHVDV---SITALSLSPNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       354 s~Dg~I~iwd~~~~~~i~~~~~~~---~v~~v~~spdg~~Lat~~~d~~~I~lW~  405 (685)
                      |.||.|+||++.++++...+....   .|++++|+|.|..|++++.++ .+.+|.
T Consensus       406 S~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~-~v~lW~  459 (459)
T KOG0288|consen  406 SADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQK-AVTLWT  459 (459)
T ss_pred             cCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCc-ceEecC
Confidence            999999999999999988886432   499999999999999999887 899993

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.98  E-value=1.5e-30  Score=275.30  Aligned_cols=284  Identities=19%  Similarity=0.305  Sum_probs=239.8

Q ss_pred             CCcEEEEEEccCCCCEEEEEe--CCCcEEEEeCCC------------CeeeEEeecccccCeeEEEEeCCCcEEEEecCC
Q 005656            2 RGAVTALAFSSDGQPLLASGA--SSGVISIWNLEK------------RRLQSVIREAHDNAIISLHFFANEPVLMSASAD   67 (685)
Q Consensus         2 ~~~V~~l~fspdg~~~latg~--~dg~I~vwd~~~------------~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D   67 (685)
                      ...|.+++.+|||. .+|||+  .||.++||+.+.            .+.+.++. .|.+.|+|+.|+|||.+||+||.|
T Consensus        13 ~~~IfSIdv~pdg~-~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~-~h~~sv~CVR~S~dG~~lAsGSDD   90 (942)
T KOG0973|consen   13 EKSIFSIDVHPDGV-KFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMD-DHDGSVNCVRFSPDGSYLASGSDD   90 (942)
T ss_pred             CeeEEEEEecCCce-eEecCCccccccceeeccccccchhhhhhcccchhheeec-cccCceeEEEECCCCCeEeeccCc
Confidence            45789999999999 999999  999999998652            23455555 899999999999999999999999


Q ss_pred             CcEEEEEecCCC--------------CCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechh
Q 005656           68 NSIKMWIFDTTD--------------GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQR  133 (685)
Q Consensus        68 ~~v~iWd~~~~~--------------~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~  133 (685)
                      +.|.||......              ..++.+..+.+|...|..++|+|++.+|++++.|++|.+|+..+.+....+   
T Consensus        91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl---  167 (942)
T KOG0973|consen   91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVL---  167 (942)
T ss_pred             ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeee---
Confidence            999999987310              124567788899999999999999999999999999999987655332222   


Q ss_pred             hHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccC
Q 005656          134 HVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC  213 (685)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  213 (685)
                                                                                                      
T Consensus       168 --------------------------------------------------------------------------------  167 (942)
T KOG0973|consen  168 --------------------------------------------------------------------------------  167 (942)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC
Q 005656          214 GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG  293 (685)
Q Consensus       214 g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  293 (685)
                                                         .+|.+.|.++.|+|-|++|++-+.|++|++|++.+..+...+..+
T Consensus       168 -----------------------------------~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~p  212 (942)
T KOG0973|consen  168 -----------------------------------RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKP  212 (942)
T ss_pred             -----------------------------------ecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccc
Confidence                                               189999999999999999999999999999998876666655432


Q ss_pred             -------CceeEEEEeecCCEEEEEeC----CCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCC-----CC---------
Q 005656          294 -------CSLVKIVYHRVNGLLATVAD----DLVIRLFDVVALRMVRKFEGHTDRITDFCFSED-----GK---------  348 (685)
Q Consensus       294 -------~~i~~~~~~~~~~~l~~~~~----dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spd-----g~---------  348 (685)
                             .....+.|+|||.+|++...    -.++.|.+-.+.+.-..|-||.+++.++.|+|.     .+         
T Consensus       213 f~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~  292 (942)
T KOG0973|consen  213 FEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNC  292 (942)
T ss_pred             hhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCc
Confidence                   55788999999999998743    348999999999999999999999999999981     11         


Q ss_pred             ---EEEEEeCCCcEEEEEcCCCceeeEEe--eccceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656          349 ---WLLSSGMDGSLRIWDVILARQIDAIH--VDVSITALSLSPNMDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       349 ---~l~s~s~Dg~I~iwd~~~~~~i~~~~--~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~  406 (685)
                         .+|+||.|++|.||.....+++..++  +...|..++|+|||..|++++.|| .|.+...
T Consensus       293 ~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DG-tV~~i~F  354 (942)
T KOG0973|consen  293 YYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDG-TVALIHF  354 (942)
T ss_pred             ceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCC-eEEEEEc
Confidence               67899999999999998888887775  456699999999999999999998 8998863

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=2.4e-29  Score=231.48  Aligned_cols=281  Identities=15%  Similarity=0.212  Sum_probs=239.5

Q ss_pred             CCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecC--CCcEEEEEecCCC
Q 005656            2 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA--DNSIKMWIFDTTD   79 (685)
Q Consensus         2 ~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~--D~~v~iWd~~~~~   79 (685)
                      .+.|+++.|+++|. +|++++.|.+|+|||..+++...++. .+.-+|..++|......++.++.  |.+||.-++... 
T Consensus        14 ~~~i~sl~fs~~G~-~litss~dDsl~LYd~~~g~~~~ti~-skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN-   90 (311)
T KOG1446|consen   14 NGKINSLDFSDDGL-LLITSSEDDSLRLYDSLSGKQVKTIN-SKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN-   90 (311)
T ss_pred             CCceeEEEecCCCC-EEEEecCCCeEEEEEcCCCceeeEee-cccccccEEEEecCCceEEEccCCCCCceEEEEeecC-
Confidence            47899999999999 88889999999999999999999998 78888999999988887777776  899999999888 


Q ss_pred             CCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeec
Q 005656           80 GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC  159 (685)
Q Consensus        80 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (685)
                         +.++.+.||...|++++.+|-+..+++++.|++|++||++..++...+.                            
T Consensus        91 ---kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~----------------------------  139 (311)
T KOG1446|consen   91 ---KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN----------------------------  139 (311)
T ss_pred             ---ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe----------------------------
Confidence               8999999999999999999999999999999999999998766544432                            


Q ss_pred             ccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcc--c
Q 005656          160 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS--R  237 (685)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~--~  237 (685)
                                                                ...-..+++.|.|-++|++...+.|.+||+++-..  .
T Consensus       140 ------------------------------------------~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF  177 (311)
T KOG1446|consen  140 ------------------------------------------LSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPF  177 (311)
T ss_pred             ------------------------------------------cCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCc
Confidence                                                      22334678999999999999999999999987422  2


Q ss_pred             cccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCC----ceeEEEEeecCCEEEEEeC
Q 005656          238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGC----SLVKIVYHRVNGLLATVAD  313 (685)
Q Consensus       238 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~~  313 (685)
                      ..+.     ...+.....+.+.|+|+|++++.+...+.+++.|.-+|....++....    -....+|.||++++++|+.
T Consensus       178 ~tf~-----i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~  252 (311)
T KOG1446|consen  178 TTFS-----ITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSD  252 (311)
T ss_pred             eeEc-----cCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecC
Confidence            2221     111456788999999999999999999999999999999888887652    2257889999999999999


Q ss_pred             CCeEEEEEcCCCeeEEEEec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005656          314 DLVIRLFDVVALRMVRKFEG-HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI  365 (685)
Q Consensus       314 dg~I~i~d~~~~~~~~~~~~-h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~  365 (685)
                      ||+|.+|+++++..+..+++ +.+++.++.|+|....+++++  ..+.+|=..
T Consensus       253 dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~  303 (311)
T KOG1446|consen  253 DGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLPD  303 (311)
T ss_pred             CCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEEecc
Confidence            99999999999999999998 799999999999766666654  568888543

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.98  E-value=5.1e-30  Score=228.63  Aligned_cols=281  Identities=17%  Similarity=0.262  Sum_probs=238.9

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEee-cccccCeeEEEEeCCC-cEEEEecCCCcEEEEEecCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR-EAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTT   78 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~-~~h~~~V~~l~~sp~~-~~l~s~s~D~~v~iWd~~~~   78 (685)
                      |.++|.+++|+.+|. .||+|+.|+++.+|+++..+...... .+|.+.|-.++|.|.. ..+++++.|.+|++||+..+
T Consensus        19 ~~~~v~Sv~wn~~g~-~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~   97 (313)
T KOG1407|consen   19 HVQKVHSVAWNCDGT-KLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSG   97 (313)
T ss_pred             hhhcceEEEEcccCc-eeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccC
Confidence            678899999999999 99999999999999998875443321 3899999999999854 59999999999999999887


Q ss_pred             CCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeee
Q 005656           79 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD  158 (685)
Q Consensus        79 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (685)
                          ++........+ =.-+.|+|+|.+++.++.|..|...|.++.+.....                            
T Consensus        98 ----k~~~~i~~~~e-ni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~----------------------------  144 (313)
T KOG1407|consen   98 ----KCTARIETKGE-NINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE----------------------------  144 (313)
T ss_pred             ----cEEEEeeccCc-ceEEEEcCCCCEEEEecCcccEEEEEecccceeehh----------------------------
Confidence                55544433333 355899999999999999999999999877654443                            


Q ss_pred             cccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccc
Q 005656          159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG  238 (685)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~  238 (685)
                                                               .....+.-++|+-++++++..+..|.|.+....+-+++.
T Consensus       145 -----------------------------------------~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~  183 (313)
T KOG1407|consen  145 -----------------------------------------QFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQ  183 (313)
T ss_pred             -----------------------------------------cccceeeeeeecCCCCEEEEecCCceEEEEecccccccc
Confidence                                                     334567788899888888888888999999999888887


Q ss_pred             ccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEee-cCCceeEEEEeecCCEEEEEeCCCeE
Q 005656          239 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE-VGCSLVKIVYHRVNGLLATVADDLVI  317 (685)
Q Consensus       239 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~I  317 (685)
                      .+.        +|.....||.|+|+|+++++|+.|..+.+||+...-+.+.+. +.-+|..+.|+.+|++||+|+.|..|
T Consensus       184 si~--------AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~I  255 (313)
T KOG1407|consen  184 SIK--------AHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFI  255 (313)
T ss_pred             ccc--------cCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceE
Confidence            775        999999999999999999999999999999999877777665 45899999999999999999999999


Q ss_pred             EEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCC---------CcEEEEEcC
Q 005656          318 RLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD---------GSLRIWDVI  365 (685)
Q Consensus       318 ~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~D---------g~I~iwd~~  365 (685)
                      -|=++++|..+..+. +.++-..++|+|...+||-++.|         |+|++|-++
T Consensus       256 DIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~  311 (313)
T KOG1407|consen  256 DIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS  311 (313)
T ss_pred             EeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence            999999999999887 88999999999999999977654         567776554

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.98  E-value=5.1e-30  Score=229.31  Aligned_cols=289  Identities=15%  Similarity=0.226  Sum_probs=236.2

Q ss_pred             ccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeec
Q 005656           44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ  123 (685)
Q Consensus        44 ~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~  123 (685)
                      ||..+++.+.|+.+|.+|++++.|.+..+|--..+    ..+.+..||.+.|+|+...-+.+++++|+.|.++++||+.+
T Consensus         8 GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG----erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t   83 (327)
T KOG0643|consen    8 GHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG----ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET   83 (327)
T ss_pred             cCccccceEEecCCCcEEEEecCCCCceEEEecCC----ceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC
Confidence            89999999999999999999999999999976666    67888899999999999999999999999999999999999


Q ss_pred             CceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCC
Q 005656          124 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT  203 (685)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  203 (685)
                      +++...+                                                                     ..+.
T Consensus        84 Gk~la~~---------------------------------------------------------------------k~~~   94 (327)
T KOG0643|consen   84 GKQLATW---------------------------------------------------------------------KTNS   94 (327)
T ss_pred             CcEEEEe---------------------------------------------------------------------ecCC
Confidence            9987766                                                                     3467


Q ss_pred             CeEEEEEccCCCEEEEEecC-----CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEE
Q 005656          204 AVKACTISACGNFAVLGTAG-----GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV  278 (685)
Q Consensus       204 ~v~~~~~s~~g~~l~~g~~d-----g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~i  278 (685)
                      +|..+.|+.+|+++++.+.+     +.|.+||++.......- ..+......+...++.+-|.|.+++|++|..||.|.+
T Consensus        95 ~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s-~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~  173 (327)
T KOG0643|consen   95 PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDS-EEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISI  173 (327)
T ss_pred             eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcc-cCceEEecCCccceeeeeecccCCEEEEecCCCcEEE
Confidence            89999999999999888654     67999999843311100 0001112267789999999999999999999999999


Q ss_pred             EECCCCceE-EEe-ecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q 005656          279 WDFKGRDLK-SRW-EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD  356 (685)
Q Consensus       279 wd~~~~~~~-~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~D  356 (685)
                      ||++++... ... .+...|+.+.++++..++++++.|.+-++||..+.++++++. ...+|++.+++|-...++.|+.-
T Consensus       174 ~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP~~d~VilgGGq  252 (327)
T KOG0643|consen  174 YDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISPLLDHVILGGGQ  252 (327)
T ss_pred             EEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee-ecccccceecccccceEEecCCc
Confidence            999997544 332 345899999999999999999999999999999999999988 56789999999987777766532


Q ss_pred             C--cEEEEEcCCC------------ceeeEEeecc-ceEEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656          357 G--SLRIWDVILA------------RQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWVNRC  408 (685)
Q Consensus       357 g--~I~iwd~~~~------------~~i~~~~~~~-~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~  408 (685)
                      .  .|..=+.+.|            +.+..+++|. +|++++|+|+|+..++|+.|| .|++.....
T Consensus       253 eA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG-~VR~h~Fd~  318 (327)
T KOG0643|consen  253 EAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDG-YVRLHHFDS  318 (327)
T ss_pred             eeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCc-eEEEEEecc
Confidence            2  1332233333            3445556554 599999999999999999998 899875443

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=6.3e-31  Score=271.44  Aligned_cols=281  Identities=21%  Similarity=0.300  Sum_probs=215.1

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEE-------------eC---CCc--EEE
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHF-------------FA---NEP--VLM   62 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~-------------sp---~~~--~l~   62 (685)
                      |+|.|+++.||+||+ |||+|+.||.|+||.+...+...    .+.+.-.++.+             ++   .++  ..-
T Consensus       266 h~gaIw~mKFS~DGK-yLAsaGeD~virVWkVie~e~~~----~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~  340 (712)
T KOG0283|consen  266 HKGAIWAMKFSHDGK-YLASAGEDGVIRVWKVIESERMR----VAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR  340 (712)
T ss_pred             cCCcEEEEEeCCCCc-eeeecCCCceEEEEEEeccchhc----ccccccchhhhhhhhccccCccccccccccccccccc
Confidence            899999999999999 99999999999999986633211    11111111111             11   011  111


Q ss_pred             EecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhc
Q 005656           63 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKL  142 (685)
Q Consensus        63 s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  142 (685)
                      .+..... .+.......-..++++.+.||.+.|..+.|+.++ +|++++.|.+||+|++....+++.+            
T Consensus       341 ~~~~s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F------------  406 (712)
T KOG0283|consen  341 KGSQSPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVF------------  406 (712)
T ss_pred             cccCCcc-ccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEE------------
Confidence            1222222 1222122222336778889999999999999765 8999999999999998766554433            


Q ss_pred             cccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec
Q 005656          143 KMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA  222 (685)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~  222 (685)
                                                                                                      
T Consensus       407 --------------------------------------------------------------------------------  406 (712)
T KOG0283|consen  407 --------------------------------------------------------------------------------  406 (712)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcC-CCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEE
Q 005656          223 GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVY  301 (685)
Q Consensus       223 dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~  301 (685)
                                                 .|...|+||+|+| |.+++++|+.||.|+||++...+...-...+.-|++++|
T Consensus       407 ---------------------------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy  459 (712)
T KOG0283|consen  407 ---------------------------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCY  459 (712)
T ss_pred             ---------------------------ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEe
Confidence                                       7899999999999 568999999999999999999999888888899999999


Q ss_pred             eecCCEEEEEeCCCeEEEEEcCCCeeEEEEec--C------CCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCceeeE
Q 005656          302 HRVNGLLATVADDLVIRLFDVVALRMVRKFEG--H------TDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILARQIDA  372 (685)
Q Consensus       302 ~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~--h------~~~I~~l~~spdg-~~l~s~s~Dg~I~iwd~~~~~~i~~  372 (685)
                      .|+|+..++|+-+|.+++|+....+....+.-  |      ...|+++.|.|.. ..|++.+.|..|||||..+..++..
T Consensus       460 ~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~K  539 (712)
T KOG0283|consen  460 SPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHK  539 (712)
T ss_pred             ccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhh
Confidence            99999999999999999999998877665531  1      2279999999843 3577778899999999998888888


Q ss_pred             Eeeccc---eEEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656          373 IHVDVS---ITALSLSPNMDVLATAHVDQNGVYLWVNRC  408 (685)
Q Consensus       373 ~~~~~~---v~~v~~spdg~~Lat~~~d~~~I~lW~~~~  408 (685)
                      |++...   -....|+.||+++++++.|. .||+|++..
T Consensus       540 fKG~~n~~SQ~~Asfs~Dgk~IVs~seDs-~VYiW~~~~  577 (712)
T KOG0283|consen  540 FKGFRNTSSQISASFSSDGKHIVSASEDS-WVYIWKNDS  577 (712)
T ss_pred             hcccccCCcceeeeEccCCCEEEEeecCc-eEEEEeCCC
Confidence            875333   56778999999999999776 999998643

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.98  E-value=3.6e-30  Score=245.02  Aligned_cols=281  Identities=18%  Similarity=0.334  Sum_probs=248.6

Q ss_pred             cEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCc
Q 005656            4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPR   83 (685)
Q Consensus         4 ~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~   83 (685)
                      .|+++...|... .+.||+.|..+.++|..+++.+..++ ||...|+.+.|+|+...+++++.|..|+||.....    .
T Consensus       221 gi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~~~-Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~----s  294 (506)
T KOG0289|consen  221 GITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILATLK-GHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS----S  294 (506)
T ss_pred             CeeEEeecCCCC-cceecCCCCceEEEecchhhhhhhcc-CcceEEEEEEeccchhheeecCCcceEEeeccccc----c
Confidence            578888888744 89999999999999999999999998 99999999999999999999999999999987765    3


Q ss_pred             eeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccccc
Q 005656           84 LLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIR  163 (685)
Q Consensus        84 ~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (685)
                      .......|..+|+.+..+|.|.||++++.||+..+.|++++.+.......                              
T Consensus       295 ~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~------------------------------  344 (506)
T KOG0289|consen  295 EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE------------------------------  344 (506)
T ss_pred             CccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec------------------------------
Confidence            44455689999999999999999999999999999999988766544210                              


Q ss_pred             ccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccc
Q 005656          164 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDM  243 (685)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~  243 (685)
                                                          ...-.+++.+|+|||..+.+|+.||.|++||+.++.....|+  
T Consensus       345 ------------------------------------~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fp--  386 (506)
T KOG0289|consen  345 ------------------------------------TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP--  386 (506)
T ss_pred             ------------------------------------cccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCC--
Confidence                                                123558999999999999999999999999999999888776  


Q ss_pred             cccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC--CceeEEEEeecCCEEEEEeCCCeEEEEE
Q 005656          244 SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADDLVIRLFD  321 (685)
Q Consensus       244 ~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~I~i~d  321 (685)
                            +|.++|..++|+.+|.++++++.|+.|++||++..+...++...  .++.++.|.+.|.+|++++.|-.|++++
T Consensus       387 ------ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~  460 (506)
T KOG0289|consen  387 ------GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICK  460 (506)
T ss_pred             ------CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence                  99999999999999999999999999999999988877777765  4699999999999999998877777776


Q ss_pred             cC--CCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005656          322 VV--ALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV  364 (685)
Q Consensus       322 ~~--~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~  364 (685)
                      -.  ++..+..+..|.+..+++.|..+.++++++|.|..++++.+
T Consensus       461 k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  461 KKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             cccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            43  56788888899999999999999999999999999998864

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=1.7e-32  Score=255.01  Aligned_cols=354  Identities=14%  Similarity=0.191  Sum_probs=269.6

Q ss_pred             eEEeecccccCeeEEEEeCCC-cEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCce
Q 005656           38 QSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAF  116 (685)
Q Consensus        38 ~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i  116 (685)
                      +..+. ||.++|.|++=+|.. ..++||+.||.|++||+...    .+...+..|.+.|..|++..  ..++++|.|.+|
T Consensus        59 v~~L~-gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR----~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtv  131 (433)
T KOG0268|consen   59 VGSLD-GHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR----ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTV  131 (433)
T ss_pred             hhhcc-ccccccchhhcCcchhhhhhccccCceEEEEehhhh----hhhheeecccCceeeEEecc--cceEEecCCcce
Confidence            45565 999999999999987 68999999999999999887    67888899999999999986  579999999999


Q ss_pred             EEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeec
Q 005656          117 RLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR  196 (685)
Q Consensus       117 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  196 (685)
                      +.|.+... ....+                                                                  
T Consensus       132 K~wk~~~~-p~~ti------------------------------------------------------------------  144 (433)
T KOG0268|consen  132 KQWKIDGP-PLHTI------------------------------------------------------------------  144 (433)
T ss_pred             eeeeccCC-cceee------------------------------------------------------------------
Confidence            99987542 11111                                                                  


Q ss_pred             CCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCC-EEEEEECCCe
Q 005656          197 PCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT-LMISAGYHGD  275 (685)
Q Consensus       197 ~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~dg~  275 (685)
                         ...+.+..+.-+..++.+++++.  .|.+||.+...+...+.        -....|.++.|+|... .|++|+.|+.
T Consensus       145 ---lg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~sms--------wG~Dti~svkfNpvETsILas~~sDrs  211 (433)
T KOG0268|consen  145 ---LGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMS--------WGADSISSVKFNPVETSILASCASDRS  211 (433)
T ss_pred             ---eccccccccccccccccccccCc--eeeecccccCCccceee--------cCCCceeEEecCCCcchheeeeccCCc
Confidence               11233344444444555555543  59999998887777764        4557899999999764 5677779999


Q ss_pred             EEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCC-eeEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 005656          276 IKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDGKWLLSSG  354 (685)
Q Consensus       276 i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~I~~l~~spdg~~l~s~s  354 (685)
                      |.+||++.+.++..+.....-+.++|+|.+-.+++|..|..++.||++.. +++..+.+|.+.|.++.|||.|+-+++||
T Consensus       212 IvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgs  291 (433)
T KOG0268|consen  212 IVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGS  291 (433)
T ss_pred             eEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcccc
Confidence            99999999999999888888899999998889999999999999999875 67888899999999999999999999999


Q ss_pred             CCCcEEEEEcCCCceeeEEeec--cceEEEEEcCCCCeEEEEEeCCCeEEEEEcCCCcCCCCCCCCCCCCccceeecCCC
Q 005656          355 MDGSLRIWDVILARQIDAIHVD--VSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPS  432 (685)
Q Consensus       355 ~Dg~I~iwd~~~~~~i~~~~~~--~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~~~~~~~~~~~~~~~~~~~~~~~p~  432 (685)
                      .|.+|+||.+..+..-..+...  ..|.||.||-|.+|+++|+.|+ .|++|..+..-.              ..+..|.
T Consensus       292 yDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~-nvRlWka~Asek--------------lgv~t~r  356 (433)
T KOG0268|consen  292 YDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDG-NVRLWKAKASEK--------------LGVITPR  356 (433)
T ss_pred             ccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCc-ceeeeecchhhh--------------cCCCChh
Confidence            9999999999988776665443  3499999999999999999887 899997433211              0001111


Q ss_pred             ccCCCCcCCCCCCCCCCcCCCCCCCCCCCCCCcCCCCcCceeecCCcHhHHhhccchHHHHhhcCCCCCCCCCCCCC
Q 005656          433 VSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNKPIEPPKKPEKAP  509 (685)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~l~~i~~r~k~~~~~~~~~~~p  509 (685)
                              |.       ..-+..+...+.|+..+++.. ......||+....++-....++...+.+|+.....+.|
T Consensus       357 --------Ek-------~~~~Y~e~Lke~y~~~peIkR-IarHR~lPk~i~~a~ki~r~~~~s~~rrea~~~~~~~~  417 (433)
T KOG0268|consen  357 --------EK-------NKLEYNEALKERYKHLPEIKR-IARHRHLPKPIKKAQKIKRTVNDSERRREANRRRHSKP  417 (433)
T ss_pred             --------HH-------HHHHHHHHHHHHHhhcHHHHH-HHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence                    00       002223334455665555444 34788899987766666666666666666665555554

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=5.7e-30  Score=268.83  Aligned_cols=280  Identities=22%  Similarity=0.386  Sum_probs=248.1

Q ss_pred             CCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEE-eecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656            2 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSV-IREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG   80 (685)
Q Consensus         2 ~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~-~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~   80 (685)
                      ...|++..|. +|  .+++|+.+++|.+||..++..+.. +. ||.+.|.+++|...+.+|++|+.|.++++||..++  
T Consensus       208 ~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~~l~-GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg--  281 (537)
T KOG0274|consen  208 DHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILTRLV-GHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG--  281 (537)
T ss_pred             cchhhhheee-cC--eEEecCCCceeEEeecccceEEEeecc-CCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC--
Confidence            3457788888 34  689999999999999999999888 76 99999999999988889999999999999998887  


Q ss_pred             CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656           81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  160 (685)
Q Consensus        81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (685)
                        .+...+.+|...|.++...+.  .+++|+.|.+|++|++.++.....+.                             
T Consensus       282 --~C~~~l~gh~stv~~~~~~~~--~~~sgs~D~tVkVW~v~n~~~l~l~~-----------------------------  328 (537)
T KOG0274|consen  282 --ECTHSLQGHTSSVRCLTIDPF--LLVSGSRDNTVKVWDVTNGACLNLLR-----------------------------  328 (537)
T ss_pred             --cEEEEecCCCceEEEEEccCc--eEeeccCCceEEEEeccCcceEEEec-----------------------------
Confidence              889999999999999988644  78889999999999999887766653                             


Q ss_pred             cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656          161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  240 (685)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~  240 (685)
                                                             +|..+|.++.++  +.++++|+.||.|.+||+.+++....+
T Consensus       329 ---------------------------------------~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl  367 (537)
T KOG0274|consen  329 ---------------------------------------GHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSL  367 (537)
T ss_pred             ---------------------------------------cccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeee
Confidence                                                   578899999998  899999999999999999999998887


Q ss_pred             ccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCC-ceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEE
Q 005656          241 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRL  319 (685)
Q Consensus       241 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i  319 (685)
                      .        +|.+.|.++.+.+. ..+++|+.|++|++||+.+. +++.++.++..+. ......+++|++++.|++|++
T Consensus       368 ~--------gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v-~~l~~~~~~Lvs~~aD~~Ik~  437 (537)
T KOG0274|consen  368 S--------GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLV-SSLLLRDNFLVSSSADGTIKL  437 (537)
T ss_pred             c--------CCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccc-cccccccceeEeccccccEEE
Confidence            6        89999999988765 78999999999999999999 8888888875544 334455889999999999999


Q ss_pred             EEcCCCeeEEEEec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEE
Q 005656          320 FDVVALRMVRKFEG-HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI  373 (685)
Q Consensus       320 ~d~~~~~~~~~~~~-h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~  373 (685)
                      ||..++++++.+.+ |.+.|+.+++.  ...+++++.||++++||++++.+++.+
T Consensus       438 WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  438 WDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             eecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence            99999999999998 77889998886  467889999999999999999988766

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=2.7e-30  Score=235.47  Aligned_cols=293  Identities=19%  Similarity=0.322  Sum_probs=244.2

Q ss_pred             cccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCC--------------CCCCceeEecccCCCCCeEEEEecCCCEEE
Q 005656           43 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT--------------DGDPRLLRFRSGHSAPPLCIRFYANGRHIL  108 (685)
Q Consensus        43 ~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~--------------~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~  108 (685)
                      ..|.+++.+.+|+|||.+++|||.|.+|+|.|++..              ......++++..|..+|+++.|+|....|+
T Consensus       109 t~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILi  188 (430)
T KOG0640|consen  109 TSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILI  188 (430)
T ss_pred             eecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEE
Confidence            379999999999999999999999999999998721              112246788899999999999999999999


Q ss_pred             EEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCcc
Q 005656          109 SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNF  188 (685)
Q Consensus       109 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~  188 (685)
                      +++.|++|++||+......+.+          +..                                             
T Consensus       189 S~srD~tvKlFDfsK~saKrA~----------K~~---------------------------------------------  213 (430)
T KOG0640|consen  189 SGSRDNTVKLFDFSKTSAKRAF----------KVF---------------------------------------------  213 (430)
T ss_pred             eccCCCeEEEEecccHHHHHHH----------HHh---------------------------------------------
Confidence            9999999999998543221111          100                                             


Q ss_pred             ccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEE
Q 005656          189 VLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMI  268 (685)
Q Consensus       189 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~  268 (685)
                                 ....+|+++.|+|.|.++++|+.-..+++||+.+-++...-.     ....|++.|+++.+++.++..+
T Consensus       214 -----------qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan-----Pd~qht~ai~~V~Ys~t~~lYv  277 (430)
T KOG0640|consen  214 -----------QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN-----PDDQHTGAITQVRYSSTGSLYV  277 (430)
T ss_pred             -----------hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC-----cccccccceeEEEecCCccEEE
Confidence                       345679999999999999999999999999999887754432     3348999999999999999999


Q ss_pred             EEECCCeEEEEECCCCceEEEeec---CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCC--C---CeEE
Q 005656          269 SAGYHGDIKVWDFKGRDLKSRWEV---GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT--D---RITD  340 (685)
Q Consensus       269 s~s~dg~i~iwd~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~--~---~I~~  340 (685)
                      +++.||.|++||--+++++.++..   ++.|.+..|..+++++++.+.|..+++|.+.+++++.++.|..  +   --+.
T Consensus       278 TaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtq  357 (430)
T KOG0640|consen  278 TASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQ  357 (430)
T ss_pred             EeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhh
Confidence            999999999999988888887753   3789999999999999999999999999999999999987641  1   2345


Q ss_pred             EEEcCCCCEEEEEe-CCCcEEEEEcCCCceeeEEe--eccceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          341 FCFSEDGKWLLSSG-MDGSLRIWDVILARQIDAIH--VDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       341 l~~spdg~~l~s~s-~Dg~I~iwd~~~~~~i~~~~--~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                      ..|+....|++.-. ..+.+.-||.+++..+..+.  +.+.+..+.-||.+.-+.+++.|- .+++|--+
T Consensus       358 AvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~-raRFWyrr  426 (430)
T KOG0640|consen  358 AVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDF-RARFWYRR  426 (430)
T ss_pred             hhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccc-eeeeeeec
Confidence            56887778887665 45779999999987776554  555699999999999999999886 99999643

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=1.9e-30  Score=251.73  Aligned_cols=297  Identities=17%  Similarity=0.253  Sum_probs=235.2

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCC----eeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEec
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR----RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD   76 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~----~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~   76 (685)
                      |+..|+++++.|.|. .+++|+.|.+|++||+...    +..+.+...-...|.++.|++.|..|++.+.....+++|-+
T Consensus       166 gtk~Vsal~~Dp~Ga-R~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRd  244 (641)
T KOG0772|consen  166 GTKIVSALAVDPSGA-RFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRD  244 (641)
T ss_pred             CceEEEEeeecCCCc-eeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccC
Confidence            566799999999998 9999999999999999753    23444444556689999999999988888888899999866


Q ss_pred             CCC--------CCCceeEecccCCCCCeEEEEecC-CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccccc
Q 005656           77 TTD--------GDPRLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEE  147 (685)
Q Consensus        77 ~~~--------~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (685)
                      ...        .-.+-+..-+||...++|.+|+|+ ...+++++.||++|+|++...+.....-.               
T Consensus       245 G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik---------------  309 (641)
T KOG0772|consen  245 GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIK---------------  309 (641)
T ss_pred             CceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEe---------------
Confidence            531        011112334689999999999997 45789999999999999976653222110               


Q ss_pred             ccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEE
Q 005656          148 ELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIE  227 (685)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~  227 (685)
                                                                     .++..+...+++.|+|+++|+.+++|+.||.|.
T Consensus       310 -----------------------------------------------~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ  342 (641)
T KOG0772|consen  310 -----------------------------------------------TKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQ  342 (641)
T ss_pred             -----------------------------------------------eccCCCcccCceeeecCCCcchhhhcccCCcee
Confidence                                                           001114566789999999999999999999999


Q ss_pred             EEECCCCccccccccccccccCCCCc--CEEEEEEcCCCCEEEEEECCCeEEEEECCCCc-eEEEee---cCCceeEEEE
Q 005656          228 RFNLQSGISRGSYLDMSERSNYAHNG--EVVGVACDSTNTLMISAGYHGDIKVWDFKGRD-LKSRWE---VGCSLVKIVY  301 (685)
Q Consensus       228 ~~d~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~---~~~~i~~~~~  301 (685)
                      +|+..+......+.     ...+|..  .|+||.|+++|++|++-|.|+++++||++..+ ++....   ...+-+.++|
T Consensus       343 ~W~~~~~~v~p~~~-----vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~F  417 (641)
T KOG0772|consen  343 IWDKGSRTVRPVMK-----VKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCF  417 (641)
T ss_pred             eeecCCcccccceE-----eeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCcccc
Confidence            99986655444432     2337877  99999999999999999999999999998643 333322   2367789999


Q ss_pred             eecCCEEEEEeC------CCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005656          302 HRVNGLLATVAD------DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI  365 (685)
Q Consensus       302 ~~~~~~l~~~~~------dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~  365 (685)
                      +|+.++|++|..      .|.+.+||..+...+.++.-.+..|..+.|+|.-+.|..|+.||+++||=-+
T Consensus       418 SPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp  487 (641)
T KOG0772|consen  418 SPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDP  487 (641)
T ss_pred             CCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEECc
Confidence            999999999864      4689999999999999988778889999999988889999999999998543

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=2.6e-29  Score=253.45  Aligned_cols=275  Identities=17%  Similarity=0.275  Sum_probs=238.7

Q ss_pred             EEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEe
Q 005656            8 LAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRF   87 (685)
Q Consensus         8 l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~   87 (685)
                      +.|+..+  .||+|. ...|++|+..++....... .+...|+++.|+++|.+|++|..+|.|.|||....    +.++.
T Consensus       183 ldWss~n--~laVal-g~~vylW~~~s~~v~~l~~-~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~----k~~~~  254 (484)
T KOG0305|consen  183 LDWSSAN--VLAVAL-GQSVYLWSASSGSVTELCS-FGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ----KKTRT  254 (484)
T ss_pred             hhcccCC--eEEEEe-cceEEEEecCCCceEEeEe-cCCCceEEEEECCCCCEEEEeecCCeEEEEehhhc----ccccc
Confidence            5677543  677775 4579999999998776666 45899999999999999999999999999998877    55566


Q ss_pred             ccc-CCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccC
Q 005656           88 RSG-HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERD  166 (685)
Q Consensus        88 ~~~-h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (685)
                      ..+ |...|-+++|.  +..+.+|+.||.|..+|++..+.....                                    
T Consensus       255 ~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~------------------------------------  296 (484)
T KOG0305|consen  255 LRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVST------------------------------------  296 (484)
T ss_pred             ccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhh------------------------------------
Confidence            667 99999999998  568899999999999999766543220                                    


Q ss_pred             CcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccccccc
Q 005656          167 WCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSER  246 (685)
Q Consensus       167 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~  246 (685)
                                                     ...|...|..+.|+++++++++|+.|+.+.+||.........+.     
T Consensus       297 -------------------------------~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~-----  340 (484)
T KOG0305|consen  297 -------------------------------LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFT-----  340 (484)
T ss_pred             -------------------------------hhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEe-----
Confidence                                           12788999999999999999999999999999997766666665     


Q ss_pred             ccCCCCcCEEEEEEcCC-CCEEEEEE--CCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEE--eCCCeEEEEE
Q 005656          247 SNYAHNGEVVGVACDST-NTLMISAG--YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV--ADDLVIRLFD  321 (685)
Q Consensus       247 ~~~~h~~~v~~l~~~~~-~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~dg~I~i~d  321 (685)
                         .|...|..++|+|- ...||+|+  .|++|++||..++..+..+...+.|..+.|++..+-|+++  ..++.|.||+
T Consensus       341 ---~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~  417 (484)
T KOG0305|consen  341 ---EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWK  417 (484)
T ss_pred             ---ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEe
Confidence               89999999999995 46788875  7999999999999999999999999999999999866654  4577999999


Q ss_pred             cCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005656          322 VVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA  367 (685)
Q Consensus       322 ~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~  367 (685)
                      ..+.+.+..+.+|..+|..+++||||..+++|+.|.++++|++-..
T Consensus       418 ~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  418 YPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             ccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            9999999999999999999999999999999999999999998764

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=4.4e-28  Score=223.12  Aligned_cols=281  Identities=15%  Similarity=0.259  Sum_probs=240.7

Q ss_pred             EEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeC--CCce
Q 005656           39 SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ--DRAF  116 (685)
Q Consensus        39 ~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~--dg~i  116 (685)
                      +.+. ...+.|.++.|+++|.+|++++.|.++++||...+    +.++++..+...|..++|......++.++.  |.+|
T Consensus         8 k~f~-~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g----~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI   82 (311)
T KOG1446|consen    8 KVFR-ETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSG----KQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI   82 (311)
T ss_pred             cccc-cCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCC----ceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence            3444 45778999999999999999999999999998887    778888888889999999887777777776  8899


Q ss_pred             EEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeec
Q 005656          117 RLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR  196 (685)
Q Consensus       117 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  196 (685)
                      |..++.+.+.++.+.                                                                 
T Consensus        83 ryLsl~dNkylRYF~-----------------------------------------------------------------   97 (311)
T KOG1446|consen   83 RYLSLHDNKYLRYFP-----------------------------------------------------------------   97 (311)
T ss_pred             EEEEeecCceEEEcC-----------------------------------------------------------------
Confidence            999999998877775                                                                 


Q ss_pred             CCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeE
Q 005656          197 PCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDI  276 (685)
Q Consensus       197 ~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i  276 (685)
                         +|...|.+++.+|-+..+++++.|++|++||++...+...+.          ...-..++|+|.|-++|++...+.|
T Consensus        98 ---GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~----------~~~~pi~AfDp~GLifA~~~~~~~I  164 (311)
T KOG1446|consen   98 ---GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN----------LSGRPIAAFDPEGLIFALANGSELI  164 (311)
T ss_pred             ---CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe----------cCCCcceeECCCCcEEEEecCCCeE
Confidence               899999999999999999999999999999999877766542          2334467999999999999877799


Q ss_pred             EEEECCC--CceEEEeec----CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCe---EEEEEcCCC
Q 005656          277 KVWDFKG--RDLKSRWEV----GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI---TDFCFSEDG  347 (685)
Q Consensus       277 ~iwd~~~--~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I---~~l~~spdg  347 (685)
                      ++||++.  ..+..++..    ....+.+.|+|+|++++.+...+.+++.|.-+|....++.++...-   ...+|+||+
T Consensus       165 kLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds  244 (311)
T KOG1446|consen  165 KLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDS  244 (311)
T ss_pred             EEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCC
Confidence            9999985  344444443    3778999999999999999999999999999999999998876543   577899999


Q ss_pred             CEEEEEeCCCcEEEEEcCCCceeeEEeec--cceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656          348 KWLLSSGMDGSLRIWDVILARQIDAIHVD--VSITALSLSPNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       348 ~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~--~~v~~v~~spdg~~Lat~~~d~~~I~lW~  405 (685)
                      +++++|+.||+|.+|++.+|..+..+...  .++.++.|+|.-..+++++  . .+-+|-
T Consensus       245 ~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s-~l~fw~  301 (311)
T KOG1446|consen  245 KFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--S-NLVFWL  301 (311)
T ss_pred             cEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--c-eEEEEe
Confidence            99999999999999999999999999874  4599999999888888774  3 788885

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=7e-29  Score=225.97  Aligned_cols=269  Identities=20%  Similarity=0.332  Sum_probs=219.3

Q ss_pred             CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCC-CeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCC
Q 005656            3 GAVTALAFSSDGQPLLASGASSGVISIWNLEK-RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD   81 (685)
Q Consensus         3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~-~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~   81 (685)
                      +.|.+++|||....+++.|+.||+|++|+++. |.........|.++|.+++|+.||..+++|+.|+.+++||+.++   
T Consensus        28 DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~---  104 (347)
T KOG0647|consen   28 DSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG---  104 (347)
T ss_pred             cchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC---
Confidence            57999999996665888999999999999987 56665555589999999999999999999999999999999886   


Q ss_pred             CceeEecccCCCCCeEEEEecCCC--EEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeec
Q 005656           82 PRLLRFRSGHSAPPLCIRFYANGR--HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC  159 (685)
Q Consensus        82 ~~~~~~~~~h~~~v~~i~~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (685)
                       + ......|.++|.++.|-+...  .|++||.|.+|+.||++....+..+.                            
T Consensus       105 -Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~----------------------------  154 (347)
T KOG0647|consen  105 -Q-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ----------------------------  154 (347)
T ss_pred             -C-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee----------------------------
Confidence             2 345568999999999988654  89999999999999998776665552                            


Q ss_pred             ccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccc
Q 005656          160 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGS  239 (685)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~  239 (685)
                                                               .+..+.++.+  -...+++++.+..|.+|+++++.....
T Consensus       155 -----------------------------------------LPeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k  191 (347)
T KOG0647|consen  155 -----------------------------------------LPERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFK  191 (347)
T ss_pred             -----------------------------------------ccceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhh
Confidence                                                     2233333332  235789999999999999987765433


Q ss_pred             cccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCce--EEEeecC----------CceeEEEEeecCCE
Q 005656          240 YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDL--KSRWEVG----------CSLVKIVYHRVNGL  307 (685)
Q Consensus       240 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~----------~~i~~~~~~~~~~~  307 (685)
                      ..      ...-.-.++|++..++....+.|+.+|.+.+..+..+..  -.++..|          ..|.+++|+|.-..
T Consensus       192 ~~------~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgt  265 (347)
T KOG0647|consen  192 RI------ESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGT  265 (347)
T ss_pred             hh------cCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccce
Confidence            21      113445789999999988889999999999999887622  2223322          35788999999999


Q ss_pred             EEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE
Q 005656          308 LATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS  353 (685)
Q Consensus       308 l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~  353 (685)
                      |++++.||++.+||-+....+.+...|..+|++.+|+.+|.++|-+
T Consensus       266 lvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  266 LVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             EEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence            9999999999999999888888888999999999999999988855

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.8e-29  Score=219.60  Aligned_cols=244  Identities=18%  Similarity=0.287  Sum_probs=217.4

Q ss_pred             ceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccc
Q 005656           83 RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI  162 (685)
Q Consensus        83 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (685)
                      +.++.+..|.++|..+.|+-+|+|.++++.|++|++|+...+..++++.                               
T Consensus         8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYs-------------------------------   56 (307)
T KOG0316|consen    8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYS-------------------------------   56 (307)
T ss_pred             hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeec-------------------------------
Confidence            3566778999999999999999999999999999999998888777765                               


Q ss_pred             cccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccc
Q 005656          163 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD  242 (685)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~  242 (685)
                                                           +|...|..++.+.|...+++|+.|..+.+||+.+|+..+.+. 
T Consensus        57 -------------------------------------ghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~r-   98 (307)
T KOG0316|consen   57 -------------------------------------GHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFR-   98 (307)
T ss_pred             -------------------------------------CCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecc-
Confidence                                                 788899999999999999999999999999999999998886 


Q ss_pred             ccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCC--ceEEEeec-CCceeEEEEeecCCEEEEEeCCCeEEE
Q 005656          243 MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR--DLKSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRL  319 (685)
Q Consensus       243 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~I~i  319 (685)
                             +|.+.|+.+.|+.+...+++|+.|.++++||.++.  ++++.+.. ...|.++...  +..+++|+.||+++.
T Consensus        99 -------gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRt  169 (307)
T KOG0316|consen   99 -------GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRT  169 (307)
T ss_pred             -------cccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEE
Confidence                   99999999999999999999999999999999865  45665543 3667777765  678999999999999


Q ss_pred             EEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccc---eEEEEEcCCCCeEEEEEe
Q 005656          320 FDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS---ITALSLSPNMDVLATAHV  396 (685)
Q Consensus       320 ~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~---v~~v~~spdg~~Lat~~~  396 (685)
                      ||++.|+...-.-+|  +|++++||+||+.++.++.|+++++.|-.+|+++..+++|..   -...+++.....+++|+.
T Consensus       170 ydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSE  247 (307)
T KOG0316|consen  170 YDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSE  247 (307)
T ss_pred             EEeecceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccC
Confidence            999999877666554  799999999999999999999999999999999999988765   567788888899999999


Q ss_pred             CCCeEEEEEcC
Q 005656          397 DQNGVYLWVNR  407 (685)
Q Consensus       397 d~~~I~lW~~~  407 (685)
                      || .|++|++-
T Consensus       248 DG-~Vy~wdLv  257 (307)
T KOG0316|consen  248 DG-KVYFWDLV  257 (307)
T ss_pred             Cc-eEEEEEec
Confidence            98 99999853

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.97  E-value=1.2e-27  Score=245.26  Aligned_cols=377  Identities=13%  Similarity=0.167  Sum_probs=298.4

Q ss_pred             EEEEEEccCC-CCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCc
Q 005656            5 VTALAFSSDG-QPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPR   83 (685)
Q Consensus         5 V~~l~fspdg-~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~   83 (685)
                      |+++ ++|.- -+-++.|+..|.+.+|++.+++.+.+++ ++...|+++.=+|--..++.|..+|+|.++++..+    +
T Consensus       162 Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~-~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d----k  235 (910)
T KOG1539|consen  162 ITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQ-EFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFD----K  235 (910)
T ss_pred             eeeE-ecchhheeeEEEeecCCcEEEEEeccCcEEEEec-ccccceeEeccCCcceEEEEeccCceEEEEEcccC----c
Confidence            6666 45542 1247789999999999999999999999 89999999999999899999999999999999887    7


Q ss_pred             eeEecccCCCCCeEEEEecCCCEEE-EEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccc
Q 005656           84 LLRFRSGHSAPPLCIRFYANGRHIL-SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI  162 (685)
Q Consensus        84 ~~~~~~~h~~~v~~i~~~~~~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (685)
                      .+..++...++|++++|..||+.++ +|+..|.+.+||++..+........+...                     ....
T Consensus       236 il~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~s---------------------v~~~  294 (910)
T KOG1539|consen  236 ILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGS---------------------VTGA  294 (910)
T ss_pred             EEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCC---------------------cccc
Confidence            7777765569999999999987555 55666999999998877665553222100                     0011


Q ss_pred             cccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEc-cCCCEEEEEecCCcEEEEECCCCccccccc
Q 005656          163 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS-ACGNFAVLGTAGGWIERFNLQSGISRGSYL  241 (685)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~  241 (685)
                      ..-....++.....+..+++|-.....-..+.++...+|..+..|+.|. .+|.++..+..|++.+.|++........+.
T Consensus       295 ~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~  374 (910)
T KOG1539|consen  295 TFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELG  374 (910)
T ss_pred             eecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhc
Confidence            1122334555556667888887776666677778888999999999988 688889999888888777653211110000


Q ss_pred             c--------------------cc-------------------------------------------ccccCCCCcCEEEE
Q 005656          242 D--------------------MS-------------------------------------------ERSNYAHNGEVVGV  258 (685)
Q Consensus       242 ~--------------------~~-------------------------------------------~~~~~~h~~~v~~l  258 (685)
                      .                    .+                                           ..........++++
T Consensus       375 ~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av  454 (910)
T KOG1539|consen  375 QLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAV  454 (910)
T ss_pred             ccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEE
Confidence            0                    00                                           00001123678999


Q ss_pred             EEcCCCCEEEEEECCCeEEEEECCCCceEEEe----ecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecC
Q 005656          259 ACDSTNTLMISAGYHGDIKVWDFKGRDLKSRW----EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH  334 (685)
Q Consensus       259 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h  334 (685)
                      +.++.|++.+.|...|+|.+|++++|-....+    .+..+|+.++...-++.+++++.+|.+.+||......+..++ -
T Consensus       455 ~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l  533 (910)
T KOG1539|consen  455 CVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-L  533 (910)
T ss_pred             EEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-c
Confidence            99999999999999999999999999888877    466999999999999999999999999999999988887776 4


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEEcCCCc
Q 005656          335 TDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNRCMF  410 (685)
Q Consensus       335 ~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~~~~~~  410 (685)
                      ...++++..+.....++.+..|-.|+++|+.+.+.++.+.+|+. |++++|||||++|++++.|+ +|++||.....
T Consensus       534 ~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~-tIr~wDlpt~~  609 (910)
T KOG1539|consen  534 GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDS-TIRTWDLPTGT  609 (910)
T ss_pred             CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCC-cEEEEeccCcc
Confidence            45688889988888999999999999999999999999997766 99999999999999999998 99999976543

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=1.3e-28  Score=236.61  Aligned_cols=274  Identities=18%  Similarity=0.282  Sum_probs=227.6

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeee-EEee----------------cccccCeeEEEEeCCCcEEEE
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ-SVIR----------------EAHDNAIISLHFFANEPVLMS   63 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~-~~~~----------------~~h~~~V~~l~~sp~~~~l~s   63 (685)
                      |+-+|+||+++||++ +.++++.+|+|.=|++.+++.. ..+.                .+|...|.+++.++||++|++
T Consensus       141 H~~s~~~vals~d~~-~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat  219 (479)
T KOG0299|consen  141 HQLSVTSVALSPDDK-RVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT  219 (479)
T ss_pred             ccCcceEEEeecccc-ceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe
Confidence            778999999999999 8999999999999999887632 1111                278899999999999999999


Q ss_pred             ecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcc
Q 005656           64 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLK  143 (685)
Q Consensus        64 ~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  143 (685)
                      |+.|..|.||+.++.    ..+..+.+|.+.|.+++|......+++++.|+++++|++.......               
T Consensus       220 gg~d~~v~Iw~~~t~----ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ve---------------  280 (479)
T KOG0299|consen  220 GGRDRHVQIWDCDTL----EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVE---------------  280 (479)
T ss_pred             cCCCceEEEecCccc----chhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHH---------------
Confidence            999999999999887    6677789999999999999888899999999999999985432211               


Q ss_pred             ccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecC
Q 005656          144 MKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG  223 (685)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d  223 (685)
                                                                                                      
T Consensus       281 --------------------------------------------------------------------------------  280 (479)
T KOG0299|consen  281 --------------------------------------------------------------------------------  280 (479)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEee
Q 005656          224 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHR  303 (685)
Q Consensus       224 g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~  303 (685)
                                             ..++|.+.|.+|.....++.+-+|+.|+++++|++.....+....+.+.+-|++|-.
T Consensus       281 -----------------------tlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In  337 (479)
T KOG0299|consen  281 -----------------------TLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIN  337 (479)
T ss_pred             -----------------------HHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEec
Confidence                                   123899999999988888877777799999999996554444444556888888874


Q ss_pred             cCCEEEEEeCCCeEEEEEcCCCeeEEEEec-C-----------CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC----
Q 005656          304 VNGLLATVADDLVIRLFDVVALRMVRKFEG-H-----------TDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA----  367 (685)
Q Consensus       304 ~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~-h-----------~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~----  367 (685)
                       ...+++|+++|.|.+|++.+.+++.+... |           ...|++++..|...++++||.+|.|++|-+..+    
T Consensus       338 -~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i  416 (479)
T KOG0299|consen  338 -DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAI  416 (479)
T ss_pred             -ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcccc
Confidence             56788999999999999999988877641 2           227999999999999999999999999999887    


Q ss_pred             ceeeEEeeccceEEEEEcCCCCeEEEEEeCC
Q 005656          368 RQIDAIHVDVSITALSLSPNMDVLATAHVDQ  398 (685)
Q Consensus       368 ~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~  398 (685)
                      .++..+...+-|++++|+++|+++++|....
T Consensus       417 ~~l~~ls~~GfVNsl~f~~sgk~ivagiGkE  447 (479)
T KOG0299|consen  417 NLLYSLSLVGFVNSLAFSNSGKRIVAGIGKE  447 (479)
T ss_pred             ceeeecccccEEEEEEEccCCCEEEEecccc
Confidence            4555666666699999999999877775443

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.5e-28  Score=223.71  Aligned_cols=265  Identities=18%  Similarity=0.264  Sum_probs=221.0

Q ss_pred             EEEEEeCCCcEEEEeCCCCe------------eeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCce
Q 005656           17 LLASGASSGVISIWNLEKRR------------LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRL   84 (685)
Q Consensus        17 ~latg~~dg~I~vwd~~~~~------------~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~   84 (685)
                      -+++|++...|.-+++.-..            ....+. +|.++|++++.+  ++++|+||.|-+|+|||+...    ..
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~-aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~----~q   75 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFS-AHAGSITALAVS--GPYVASGSSDETIHIYDMRKR----KQ   75 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccccccccceeeecccccc-ccccceeEEEec--ceeEeccCCCCcEEEEeccch----hh
Confidence            36788888888877764321            133344 899999999986  899999999999999999887    55


Q ss_pred             eEecccCCCCCeEEEEecCCC--EEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccc
Q 005656           85 LRFRSGHSAPPLCIRFYANGR--HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI  162 (685)
Q Consensus        85 ~~~~~~h~~~v~~i~~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (685)
                      +..+-.|.+.|+++.|+++-.  +|++|+.||.|.+|++........+.                               
T Consensus        76 lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK-------------------------------  124 (362)
T KOG0294|consen   76 LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLK-------------------------------  124 (362)
T ss_pred             hcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeec-------------------------------
Confidence            566668999999999999754  89999999999999987766555543                               


Q ss_pred             cccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccc
Q 005656          163 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD  242 (685)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~  242 (685)
                                                           .|...|+.++++|.|+..++.+.|+.++.||+-.|+.-....-
T Consensus       125 -------------------------------------~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L  167 (362)
T KOG0294|consen  125 -------------------------------------AHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL  167 (362)
T ss_pred             -------------------------------------ccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc
Confidence                                                 6778899999999999999999999999999998876554421


Q ss_pred             ccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEc
Q 005656          243 MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDV  322 (685)
Q Consensus       243 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~  322 (685)
                             .+.  -+.+.|+|.|.+++.++. ..|-+|.+.+..+...+..+..+.++.|. ++..|++|.+|+.|.+||.
T Consensus       168 -------~~~--at~v~w~~~Gd~F~v~~~-~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~  236 (362)
T KOG0294|consen  168 -------KNK--ATLVSWSPQGDHFVVSGR-NKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDT  236 (362)
T ss_pred             -------CCc--ceeeEEcCCCCEEEEEec-cEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEecc
Confidence                   232  334999999998888876 46899999988887777777677777775 4678999999999999999


Q ss_pred             CCCeeEEEEecCCCCeEEEEE--cCCCCEEEEEeCCCcEEEEEcCCC
Q 005656          323 VALRMVRKFEGHTDRITDFCF--SEDGKWLLSSGMDGSLRIWDVILA  367 (685)
Q Consensus       323 ~~~~~~~~~~~h~~~I~~l~~--spdg~~l~s~s~Dg~I~iwd~~~~  367 (685)
                      ++..+...+.+|..+|.++.+  .|++.+|+|+|.||.|+|||+...
T Consensus       237 ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  237 DSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             CCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            999999999999999999985  567889999999999999999876

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.9e-29  Score=228.46  Aligned_cols=289  Identities=19%  Similarity=0.321  Sum_probs=247.1

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEe-----
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF-----   75 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~-----   75 (685)
                      |++.|+.++-..... ++.+++.|.+.+||.++++.++..+. ||.+.|+++.|++.+.++++++.|++..||..     
T Consensus       147 HkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~Y~-GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~  224 (481)
T KOG0300|consen  147 HKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLATYT-GHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWE  224 (481)
T ss_pred             cccceeeehhhcCCc-ceeecccccceeEEeeccccceeeec-ccccceeeEEeccccceEEEccCCcchHHHHHhhcCc
Confidence            788899998876544 99999999999999999999999998 99999999999999999999999999999962     


Q ss_pred             -cCC----------------------------C--CCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecC
Q 005656           76 -DTT----------------------------D--GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQD  124 (685)
Q Consensus        76 -~~~----------------------------~--~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~  124 (685)
                       ...                            +  ....++..+.+|.+.|.+..|...|+.+++++.|++..+||++++
T Consensus       225 vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg  304 (481)
T KOG0300|consen  225 VPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETG  304 (481)
T ss_pred             CCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccC
Confidence             110                            0  012345667899999999999999999999999999999999999


Q ss_pred             ceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCC
Q 005656          125 QQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTA  204 (685)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  204 (685)
                      ..+..+.                                                                    +|...
T Consensus       305 e~v~~Lt--------------------------------------------------------------------GHd~E  316 (481)
T KOG0300|consen  305 EVVNILT--------------------------------------------------------------------GHDSE  316 (481)
T ss_pred             ceecccc--------------------------------------------------------------------Ccchh
Confidence            8766654                                                                    78888


Q ss_pred             eEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 005656          205 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR  284 (685)
Q Consensus       205 v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~  284 (685)
                      .+.++-+|..+.+++.+.|.+.++||.+........       +.+|...|+++.|..+. .+++|+.|.+|++||+++.
T Consensus       317 LtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~V-------FQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNM  388 (481)
T KOG0300|consen  317 LTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAV-------FQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNM  388 (481)
T ss_pred             ccccccCCcceEEEEeccCceeEeccchhhcceeee-------ecccccceeEEEEecCC-ceeecCCCceEEEeeeccc
Confidence            999999999999999999999999999855443322       23999999999998765 5899999999999999875


Q ss_pred             -ceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEE----EEecCCCCeEEEEEcCCC--CEEEEEeCCC
Q 005656          285 -DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR----KFEGHTDRITDFCFSEDG--KWLLSSGMDG  357 (685)
Q Consensus       285 -~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~----~~~~h~~~I~~l~~spdg--~~l~s~s~Dg  357 (685)
                       .++.++...++++.++.+..+..+|.-.++..|++||+...+..+    .-.+|...|+|++|..+.  .-|++++-|.
T Consensus       389 RsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR  468 (481)
T KOG0300|consen  389 RSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDR  468 (481)
T ss_pred             cCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccc
Confidence             578889999999999999988899999999999999998665433    235899999999997643  3588999999


Q ss_pred             cEEEEEcCCC
Q 005656          358 SLRIWDVILA  367 (685)
Q Consensus       358 ~I~iwd~~~~  367 (685)
                      .+.=|.+...
T Consensus       469 ~v~gW~in~p  478 (481)
T KOG0300|consen  469 MVAGWKINTP  478 (481)
T ss_pred             eeeeeEeccc
Confidence            9999998754

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=1.7e-27  Score=250.26  Aligned_cols=265  Identities=15%  Similarity=0.206  Sum_probs=203.6

Q ss_pred             cEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeee-------------EEeecccccCeeEEEEeC-CCcEEEEecCCCc
Q 005656            4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ-------------SVIREAHDNAIISLHFFA-NEPVLMSASADNS   69 (685)
Q Consensus         4 ~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~-------------~~~~~~h~~~V~~l~~sp-~~~~l~s~s~D~~   69 (685)
                      .|+....++|+. .+++++.+.....|+...+..+             ..+. +|.+.|++++|+| ++.+|++|+.|++
T Consensus        22 ~i~~~~~~~d~~-~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~-GH~~~V~~v~fsP~d~~~LaSgS~Dgt   99 (493)
T PTZ00421         22 NVTPSTALWDCS-NTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILL-GQEGPIIDVAFNPFDPQKLFTASEDGT   99 (493)
T ss_pred             ccccccccCCCC-CcEeECCceEEEEEecCCceEEeeccccccCCCCCceEe-CCCCCEEEEEEcCCCCCEEEEEeCCCE
Confidence            355566777866 4566666666677775544322             1344 8999999999999 8889999999999


Q ss_pred             EEEEEecCCCC---CCceeEecccCCCCCeEEEEecCC-CEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccc
Q 005656           70 IKMWIFDTTDG---DPRLLRFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK  145 (685)
Q Consensus        70 v~iWd~~~~~~---~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  145 (685)
                      |++|++.....   ....+..+.+|...|.+++|+|++ ++|++++.|++|++||+.+++....+               
T Consensus       100 IkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l---------------  164 (493)
T PTZ00421        100 IMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVI---------------  164 (493)
T ss_pred             EEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEE---------------
Confidence            99999976421   123566778999999999999985 68999999999999998654322111               


Q ss_pred             ccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCc
Q 005656          146 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGW  225 (685)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~  225 (685)
                                                                                                      
T Consensus       165 --------------------------------------------------------------------------------  164 (493)
T PTZ00421        165 --------------------------------------------------------------------------------  164 (493)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCC--ceeEEEEee
Q 005656          226 IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGC--SLVKIVYHR  303 (685)
Q Consensus       226 i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~i~~~~~~~  303 (685)
                                             ..|...|.+++|+|++.+|++++.||+|++||+++++.+..+..+.  ....+.|.+
T Consensus       165 -----------------------~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~  221 (493)
T PTZ00421        165 -----------------------KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAK  221 (493)
T ss_pred             -----------------------cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcC
Confidence                                   1688889999999999999999999999999999998887776553  345678888


Q ss_pred             cCCEEEEEe----CCCeEEEEEcCCCe-eEEEEecC-CCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCceeeEEeec
Q 005656          304 VNGLLATVA----DDLVIRLFDVVALR-MVRKFEGH-TDRITDFCFSEDGKWLLSSG-MDGSLRIWDVILARQIDAIHVD  376 (685)
Q Consensus       304 ~~~~l~~~~----~dg~I~i~d~~~~~-~~~~~~~h-~~~I~~l~~spdg~~l~s~s-~Dg~I~iwd~~~~~~i~~~~~~  376 (685)
                      ++..+++++    .|+.|++||+++.. ++.....+ ...+....|++++++|++++ .|+.|++||+.+++++......
T Consensus       222 ~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~  301 (493)
T PTZ00421        222 RKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYS  301 (493)
T ss_pred             CCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeecc
Confidence            888776654    47899999998754 44444333 34566678999999999887 5999999999999887766543


Q ss_pred             --cceEEEEEcCCC
Q 005656          377 --VSITALSLSPNM  388 (685)
Q Consensus       377 --~~v~~v~~spdg  388 (685)
                        .++..++|.|.-
T Consensus       302 s~~~~~g~~~~pk~  315 (493)
T PTZ00421        302 SVEPHKGLCMMPKW  315 (493)
T ss_pred             CCCCCcceEecccc
Confidence              348889998853

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.1e-28  Score=219.34  Aligned_cols=280  Identities=16%  Similarity=0.267  Sum_probs=225.6

Q ss_pred             EEEEEccCCCCEEEEEe-------CCCcEEEEeCCCCeeeEEee-cccccCeeEEEEeCCC-cEEEEecCCCcEEEEEec
Q 005656            6 TALAFSSDGQPLLASGA-------SSGVISIWNLEKRRLQSVIR-EAHDNAIISLHFFANE-PVLMSASADNSIKMWIFD   76 (685)
Q Consensus         6 ~~l~fspdg~~~latg~-------~dg~I~vwd~~~~~~~~~~~-~~h~~~V~~l~~sp~~-~~l~s~s~D~~v~iWd~~   76 (685)
                      .++.|||--...||++.       ..|.+.|-++...+-+.... ..-.+.+..++|+++. +.+++++.||++++||..
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~   91 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT   91 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence            47889995433444432       46899999997444333332 1356789999999964 588999999999999954


Q ss_pred             CCCCCCceeEecccCCCCCeEEEEecC-CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCcee
Q 005656           77 TTDGDPRLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI  155 (685)
Q Consensus        77 ~~~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (685)
                      ...   .++..++.|...|.++.|++- +..+++++.|++|++|+...+..+.++.                        
T Consensus        92 ~~s---~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~------------------------  144 (311)
T KOG0277|consen   92 MPS---KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFN------------------------  144 (311)
T ss_pred             CCC---cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeec------------------------
Confidence            443   577888999999999999984 6678888999999999987776655543                        


Q ss_pred             eeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEcc-CCCEEEEEecCCcEEEEECCCC
Q 005656          156 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQSG  234 (685)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~~~d~~~~  234 (685)
                                                                  +|...|....|+| .++.+++++.||.+++||++..
T Consensus       145 --------------------------------------------gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~  180 (311)
T KOG0277|consen  145 --------------------------------------------GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP  180 (311)
T ss_pred             --------------------------------------------CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC
Confidence                                                        7788899999999 6789999999999999999876


Q ss_pred             ccccccccccccccCCCCcCEEEEEEcCCC-CEEEEEECCCeEEEEECCCCc-eEEEeec-CCceeEEEEeecCC-EEEE
Q 005656          235 ISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRD-LKSRWEV-GCSLVKIVYHRVNG-LLAT  310 (685)
Q Consensus       235 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~-~~~~~~~-~~~i~~~~~~~~~~-~l~~  310 (685)
                      .....+.        .|...+.++.|+.-+ ..++||+.|+.|+.||+++.+ ++..+.. .-.|..+.|+|... +||+
T Consensus       181 gk~~~i~--------ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaS  252 (311)
T KOG0277|consen  181 GKFMSIE--------AHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLAS  252 (311)
T ss_pred             CceeEEE--------eccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhh
Confidence            5544444        899999999998754 678999999999999998643 4555544 47899999999765 9999


Q ss_pred             EeCCCeEEEEEcCCC-eeEEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEc
Q 005656          311 VADDLVIRLFDVVAL-RMVRKFEGHTDRITDFCFSE-DGKWLLSSGMDGSLRIWDV  364 (685)
Q Consensus       311 ~~~dg~I~i~d~~~~-~~~~~~~~h~~~I~~l~~sp-dg~~l~s~s~Dg~I~iwd~  364 (685)
                      ++.|-+++|||...+ ..+.+...|+.-|..+.||+ ++.++|+++.|+.++||+-
T Consensus       253 asYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  253 ASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             ccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            999999999999854 55667778999999999998 6679999999999999983

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.2e-26  Score=202.47  Aligned_cols=284  Identities=18%  Similarity=0.268  Sum_probs=215.5

Q ss_pred             CcEEEEEEccCCCCEEEEEeCCCcEEEEeCC------CC--------eeeEEeecccccCeeEEEEeCCCcEEEEecCCC
Q 005656            3 GAVTALAFSSDGQPLLASGASSGVISIWNLE------KR--------RLQSVIREAHDNAIISLHFFANEPVLMSASADN   68 (685)
Q Consensus         3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~------~~--------~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~   68 (685)
                      ..|.+++|+|.|. +.|+|+...+.+|.-..      .+        .....-...|.+.|+|.+|+|+|.++++|+.|.
T Consensus        33 qairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk  111 (350)
T KOG0641|consen   33 QAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDK  111 (350)
T ss_pred             hheeeEEecCCCc-eEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCc
Confidence            4689999999999 99999999988887432      11        111111237899999999999999999999999


Q ss_pred             cEEEEEecCCCCCC-ceeEecccCCCCCeEEEEecC----CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcc
Q 005656           69 SIKMWIFDTTDGDP-RLLRFRSGHSAPPLCIRFYAN----GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLK  143 (685)
Q Consensus        69 ~v~iWd~~~~~~~~-~~~~~~~~h~~~v~~i~~~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  143 (685)
                      +|++.-++...... -.-..+.-|.+.|..++|..+    |..|++++ .|..++|                        
T Consensus       112 ~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~g-agdc~iy------------------------  166 (350)
T KOG0641|consen  112 TIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAG-AGDCKIY------------------------  166 (350)
T ss_pred             eEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecC-CCcceEE------------------------
Confidence            99998776653211 111234568888888888654    34444443 2222222                        


Q ss_pred             ccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecC
Q 005656          144 MKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG  223 (685)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d  223 (685)
                                                                                                      
T Consensus       167 --------------------------------------------------------------------------------  166 (350)
T KOG0641|consen  167 --------------------------------------------------------------------------------  166 (350)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC--------Cc
Q 005656          224 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--------CS  295 (685)
Q Consensus       224 g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--------~~  295 (685)
                          +-|-..|+....+.        +|++.|.++- +-+|-.+++|+.|.+|++||++-...+.++...        +.
T Consensus       167 ----~tdc~~g~~~~a~s--------ghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessa  233 (350)
T KOG0641|consen  167 ----ITDCGRGQGFHALS--------GHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSA  233 (350)
T ss_pred             ----EeecCCCCcceeec--------CCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccce
Confidence                22233333333222        7888887763 335778999999999999999988877776532        67


Q ss_pred             eeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC----ceee
Q 005656          296 LVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA----RQID  371 (685)
Q Consensus       296 i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~----~~i~  371 (685)
                      +..++..|.|++|++|-.|.+..+||++.++.++.|..|...|.++.|||...|+++++.|..|++-|+...    -.+.
T Consensus       234 vaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~  313 (350)
T KOG0641|consen  234 VAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIM  313 (350)
T ss_pred             eEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceE
Confidence            899999999999999999999999999999999999999999999999999999999999999999998632    1222


Q ss_pred             EE-eeccceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656          372 AI-HVDVSITALSLSPNMDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       372 ~~-~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~  406 (685)
                      .+ .+...+..+.|+|..-.+++.+.|. ++.+|..
T Consensus       314 vv~ehkdk~i~~rwh~~d~sfisssadk-t~tlwa~  348 (350)
T KOG0641|consen  314 VVAEHKDKAIQCRWHPQDFSFISSSADK-TATLWAL  348 (350)
T ss_pred             EEEeccCceEEEEecCccceeeeccCcc-eEEEecc
Confidence            23 3344588899999998899999997 9999974

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.3e-27  Score=218.88  Aligned_cols=291  Identities=20%  Similarity=0.264  Sum_probs=215.2

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCee--eEEee-cccccCeeEEEEeCCCc-EEEEecCCCcEEEEEec
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL--QSVIR-EAHDNAIISLHFFANEP-VLMSASADNSIKMWIFD   76 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~--~~~~~-~~h~~~V~~l~~sp~~~-~l~s~s~D~~v~iWd~~   76 (685)
                      |.+.|++++|+.||+ .|||++.|++|+||++.....  .+.++ +---+.-+.+.|+||-+ .+++.-..+++++|.+.
T Consensus        85 H~~~vt~~~FsSdGK-~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~  163 (420)
T KOG2096|consen   85 HKKEVTDVAFSSDGK-KLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLV  163 (420)
T ss_pred             cCCceeeeEEcCCCc-eeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEee
Confidence            889999999999999 999999999999999876321  11111 01123457899999987 44555566789999876


Q ss_pred             CCCC-CC-------ceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccc
Q 005656           77 TTDG-DP-------RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEE  148 (685)
Q Consensus        77 ~~~~-~~-------~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (685)
                      .... ..       ..+.....|..++..+-...++++|++++.|..|.+|++. ++....+.                 
T Consensus       164 K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~id-----------------  225 (420)
T KOG2096|consen  164 KKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSID-----------------  225 (420)
T ss_pred             ecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeec-----------------
Confidence            5421 11       1112334577788888888889999999999999999997 65554443                 


Q ss_pred             cccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEE
Q 005656          149 LKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIER  228 (685)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~  228 (685)
                                                                         .....-...++||||+++++++-.-.|.+
T Consensus       226 ---------------------------------------------------tnq~~n~~aavSP~GRFia~~gFTpDVkV  254 (420)
T KOG2096|consen  226 ---------------------------------------------------TNQSSNYDAAVSPDGRFIAVSGFTPDVKV  254 (420)
T ss_pred             ---------------------------------------------------cccccccceeeCCCCcEEEEecCCCCceE
Confidence                                                               22334567789999999999999999999


Q ss_pred             EECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCC-------ceEEEee-----cCCce
Q 005656          229 FNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-------DLKSRWE-----VGCSL  296 (685)
Q Consensus       229 ~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~-------~~~~~~~-----~~~~i  296 (685)
                      |.+--++.-............+|...|..++|+++.+.+++.+.||++++||++-.       +.+.+..     .++..
T Consensus       255 wE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p  334 (420)
T KOG2096|consen  255 WEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEP  334 (420)
T ss_pred             EEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCc
Confidence            98642211000000111134599999999999999999999999999999998621       2222221     12445


Q ss_pred             eEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005656          297 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE-GHTDRITDFCFSEDGKWLLSSGMDGSLRIWD  363 (685)
Q Consensus       297 ~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~-~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd  363 (685)
                      ..+..+|+|+.||.+.. ..+++|..++++..-+++ .|...|++++|+++|+++++++ |..++++.
T Consensus       335 ~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  335 VRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             eEEEeCCCCcEEEeecC-CceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence            58999999999887653 579999999998777765 5999999999999999999998 67788876

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=6.1e-28  Score=234.46  Aligned_cols=308  Identities=15%  Similarity=0.231  Sum_probs=235.7

Q ss_pred             eeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEec-ccCCCCCeEEEEecCCCEEEEEeCCCc
Q 005656           37 LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFR-SGHSAPPLCIRFYANGRHILSAGQDRA  115 (685)
Q Consensus        37 ~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~-~~h~~~v~~i~~~~~~~~l~s~s~dg~  115 (685)
                      +...++ +|+..|.++++.|.|..|+|||.|.+|++||+...+...+..+.+ ......|.+++|++.|..|++.+....
T Consensus       159 hEi~l~-hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq  237 (641)
T KOG0772|consen  159 HEIQLK-HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ  237 (641)
T ss_pred             ceEecc-CCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence            344555 889999999999999999999999999999998776544444333 234568999999999999999999999


Q ss_pred             eEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceee
Q 005656          116 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL  195 (685)
Q Consensus       116 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  195 (685)
                      .+++|-..... .++..+..                                             ++-++          
T Consensus       238 akl~DRdG~~~-~e~~KGDQ---------------------------------------------YI~Dm----------  261 (641)
T KOG0772|consen  238 AKLLDRDGFEI-VEFSKGDQ---------------------------------------------YIRDM----------  261 (641)
T ss_pred             eeEEccCCcee-eeeeccch---------------------------------------------hhhhh----------
Confidence            99998543332 22221110                                             11111          


Q ss_pred             cCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCC
Q 005656          196 RPCPENPTAVKACTISACG-NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG  274 (685)
Q Consensus       196 ~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg  274 (685)
                      ....+|...++|.+|+|.. ..+++++.||++++||+...+.......  .+...+..-.++.++|++++..|++|+.||
T Consensus       262 ~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik--~k~~~g~Rv~~tsC~~nrdg~~iAagc~DG  339 (641)
T KOG0772|consen  262 YNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIK--TKPAGGKRVPVTSCAWNRDGKLIAAGCLDG  339 (641)
T ss_pred             hccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEe--eccCCCcccCceeeecCCCcchhhhcccCC
Confidence            1122788889999999965 5788999999999999987654333321  111124556789999999999999999999


Q ss_pred             eEEEEECCCCceE--EEe--ec--CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCC-eeEEEEecCC--CCeEEEEEcC
Q 005656          275 DIKVWDFKGRDLK--SRW--EV--GCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-RMVRKFEGHT--DRITDFCFSE  345 (685)
Q Consensus       275 ~i~iwd~~~~~~~--~~~--~~--~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~-~~~~~~~~h~--~~I~~l~~sp  345 (685)
                      .|.+|+..+....  ..+  .|  +..|+++.|+++|++|++-+.|+++++||++.. +++....+-.  -+-++++|||
T Consensus       340 SIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSP  419 (641)
T KOG0772|consen  340 SIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSP  419 (641)
T ss_pred             ceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCC
Confidence            9999998543221  111  12  258999999999999999999999999999875 5666655533  3467899999


Q ss_pred             CCCEEEEEeC------CCcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEE
Q 005656          346 DGKWLLSSGM------DGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLW  404 (685)
Q Consensus       346 dg~~l~s~s~------Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW  404 (685)
                      +.++|++|+.      .|++.+||..+...+..+..... |..+.|+|.-+.+.+++.|| +++++
T Consensus       420 d~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG-~~~vy  484 (641)
T KOG0772|consen  420 DDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDG-TAHVY  484 (641)
T ss_pred             CceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCC-ceEEE
Confidence            9999999853      47899999999999988876655 99999999999999999998 78876

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.96  E-value=3.9e-26  Score=221.44  Aligned_cols=369  Identities=14%  Similarity=0.193  Sum_probs=279.7

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCC--------cEEEEeCCCCeeeEEeecccccCeeEEEEeCC--CcEEEEe--cCCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSG--------VISIWNLEKRRLQSVIREAHDNAIISLHFFAN--EPVLMSA--SADN   68 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg--------~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~--~~~l~s~--s~D~   68 (685)
                      |...|-|++.+||.- .+|+|-..|        .+++||..+-..+..+- .....|.|++|++-  |.+|...  +.+.
T Consensus       103 H~ddikc~~vHPdri-~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g-~f~~GV~~vaFsk~~~G~~l~~vD~s~~h  180 (626)
T KOG2106|consen  103 HNDDIKCMAVHPDRI-RVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIG-FFDRGVTCVAFSKINGGSLLCAVDDSNPH  180 (626)
T ss_pred             CCCceEEEeecCCce-eeccCcccccCCCcCCCeeeecccccceeeeeec-cccccceeeeecccCCCceEEEecCCCcc
Confidence            778899999999976 778775444        59999988888787776 67788999999983  4455544  4466


Q ss_pred             cEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccc
Q 005656           69 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEE  148 (685)
Q Consensus        69 ~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (685)
                      .+.+||+..+.    .....+.....|....|+|.+..++....-|.+.+|+.+.+...+....-.          ..+.
T Consensus       181 ~lSVWdWqk~~----~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fe----------k~ek  246 (626)
T KOG2106|consen  181 MLSVWDWQKKA----KLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFE----------KREK  246 (626)
T ss_pred             ccchhhchhhh----ccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccc----------cccc
Confidence            78999998763    333334456778899999976666666667899999998887665542110          0000


Q ss_pred             cccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEE
Q 005656          149 LKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIER  228 (685)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~  228 (685)
                         ..+.++...      .+.-+..+..++.+.+|+.......+...    .|++.|.+++.-.+|..+- |+.|..|..
T Consensus       247 ---k~Vl~v~F~------engdviTgDS~G~i~Iw~~~~~~~~k~~~----aH~ggv~~L~~lr~GtllS-GgKDRki~~  312 (626)
T KOG2106|consen  247 ---KFVLCVTFL------ENGDVITGDSGGNILIWSKGTNRISKQVH----AHDGGVFSLCMLRDGTLLS-GGKDRKIIL  312 (626)
T ss_pred             ---eEEEEEEEc------CCCCEEeecCCceEEEEeCCCceEEeEee----ecCCceEEEEEecCccEee-cCccceEEe
Confidence               112221111      12235566778999999997665555443    7899999999999998777 999999999


Q ss_pred             EECCCCccccccc---------------------------------cccccccCCCCcCEEEEEEcCCCCEEEEEECCCe
Q 005656          229 FNLQSGISRGSYL---------------------------------DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD  275 (685)
Q Consensus       229 ~d~~~~~~~~~~~---------------------------------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~  275 (685)
                      ||-. -+.++...                                 ........+|.....+++.+|+...+++++.|+.
T Consensus       313 Wd~~-y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~  391 (626)
T KOG2106|consen  313 WDDN-YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKH  391 (626)
T ss_pred             cccc-ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcce
Confidence            9832 11111110                                 0001123478888999999999999999999999


Q ss_pred             EEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeC
Q 005656          276 IKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM  355 (685)
Q Consensus       276 i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~  355 (685)
                      +++|+  ..++..+.....+..++.|+|.| .+|+|...|...+.|.++...+..-.. +.+++++.|+|+|.+||.|+.
T Consensus       392 v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~  467 (626)
T KOG2106|consen  392 VRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSH  467 (626)
T ss_pred             EEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecC
Confidence            99999  77888888888999999999999 999999999999999999777666555 899999999999999999999


Q ss_pred             CCcEEEEEcCCC-ceeeEEe--eccceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656          356 DGSLRIWDVILA-RQIDAIH--VDVSITALSLSPNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       356 Dg~I~iwd~~~~-~~i~~~~--~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~  405 (685)
                      |+.|+||.+..+ .......  ..++|+.+.||+|+++|.+-+.|- .|-.|.
T Consensus       468 d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~-eiLyW~  519 (626)
T KOG2106|consen  468 DNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDY-EILYWK  519 (626)
T ss_pred             CCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCce-EEEEEc
Confidence            999999998754 3333332  226699999999999999999886 899993

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=5.1e-28  Score=234.32  Aligned_cols=236  Identities=19%  Similarity=0.320  Sum_probs=205.9

Q ss_pred             CCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCc-EEEEecCCCcEEEEEecCCCC
Q 005656            2 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDG   80 (685)
Q Consensus         2 ~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~D~~v~iWd~~~~~~   80 (685)
                      +..|+++.|..||+ +||+|...|.|+|||.++...+..+. +|+.+|..+.|+|.++ .+++|+.|+.+++||+++.  
T Consensus        68 k~~v~s~~fR~DG~-LlaaGD~sG~V~vfD~k~r~iLR~~~-ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a--  143 (487)
T KOG0310|consen   68 KDVVYSVDFRSDGR-LLAAGDESGHVKVFDMKSRVILRQLY-AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA--  143 (487)
T ss_pred             ccceeEEEeecCCe-EEEccCCcCcEEEeccccHHHHHHHh-hccCceeEEEecccCCeEEEecCCCceEEEEEcCCc--
Confidence            46789999999999 99999999999999988877888887 9999999999999655 7788888999999999887  


Q ss_pred             CCceeEecccCCCCCeEEEEecC-CCEEEEEeCCCceEEEEeecC-ceeeEechhhHHHHHhhccccccccccCceeeee
Q 005656           81 DPRLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQD-QQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD  158 (685)
Q Consensus        81 ~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (685)
                        .....+.+|...|.|.+|+|- +..++|||.||.|++||++.. ....++                            
T Consensus       144 --~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el----------------------------  193 (487)
T KOG0310|consen  144 --YVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL----------------------------  193 (487)
T ss_pred             --EEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe----------------------------
Confidence              445678899999999999996 558899999999999999876 333333                            


Q ss_pred             cccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccc
Q 005656          159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG  238 (685)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~  238 (685)
                                                               .|..+|..+.+-|.|..+++++. ..|++||+-+|....
T Consensus       194 -----------------------------------------nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll  231 (487)
T KOG0310|consen  194 -----------------------------------------NHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLL  231 (487)
T ss_pred             -----------------------------------------cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceeh
Confidence                                                     67889999999999998887754 469999999665433


Q ss_pred             ccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEE
Q 005656          239 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIR  318 (685)
Q Consensus       239 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~  318 (685)
                      ...       ..|...|+|+.+..++..|++++.|+.|++||+.+.+.+..+..+++|.+++.+|++..+++|..||.+.
T Consensus       232 ~~~-------~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~  304 (487)
T KOG0310|consen  232 TSM-------FNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVS  304 (487)
T ss_pred             hhh-------hcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceee
Confidence            322       1599999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             EE
Q 005656          319 LF  320 (685)
Q Consensus       319 i~  320 (685)
                      +-
T Consensus       305 ~r  306 (487)
T KOG0310|consen  305 IR  306 (487)
T ss_pred             ee
Confidence            65

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=3.5e-27  Score=216.01  Aligned_cols=268  Identities=15%  Similarity=0.259  Sum_probs=218.5

Q ss_pred             CCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCC
Q 005656            2 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD   81 (685)
Q Consensus         2 ~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~   81 (685)
                      +..|++|.|+|.+. .|++++.||++++||+....+...++  |..++.+++|.+ ...+++|+.||.|+.+|++++.  
T Consensus        13 ~d~IS~v~f~~~~~-~LLvssWDgslrlYdv~~~~l~~~~~--~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~--   86 (323)
T KOG1036|consen   13 EDGISSVKFSPSSS-DLLVSSWDGSLRLYDVPANSLKLKFK--HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN--   86 (323)
T ss_pred             hhceeeEEEcCcCC-cEEEEeccCcEEEEeccchhhhhhee--cCCceeeeeccC-CceEEEeccCceEEEEEecCCc--
Confidence            35699999999888 66677799999999999987777775  999999999987 4588999999999999999863  


Q ss_pred             CceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccc
Q 005656           82 PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE  161 (685)
Q Consensus        82 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (685)
                         ...+..|..+|.||.+++....+++||.|++|++||.+.......+                               
T Consensus        87 ---~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~-------------------------------  132 (323)
T KOG1036|consen   87 ---EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTF-------------------------------  132 (323)
T ss_pred             ---ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccc-------------------------------
Confidence               2344679999999999998889999999999999998763322222                               


Q ss_pred             ccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccc
Q 005656          162 IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYL  241 (685)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~  241 (685)
                                                            .....|.++..  .|+.|++|+.+..+.+||+++.....+. 
T Consensus       133 --------------------------------------d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~-  171 (323)
T KOG1036|consen  133 --------------------------------------DQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQR-  171 (323)
T ss_pred             --------------------------------------ccCceEEEEec--cCCEEEEeecCceEEEEEcccccchhhh-
Confidence                                                  12234555444  5789999999999999999986554322 


Q ss_pred             cccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCC----ceEEEeecC----------CceeEEEEeecCCE
Q 005656          242 DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR----DLKSRWEVG----------CSLVKIVYHRVNGL  307 (685)
Q Consensus       242 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~~----------~~i~~~~~~~~~~~  307 (685)
                           ....-+-.++|+++.|++.-++.++.||.|.+=.++..    +....+..|          .+|++++|+|-.+.
T Consensus       172 -----reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~t  246 (323)
T KOG1036|consen  172 -----RESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGT  246 (323)
T ss_pred             -----ccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccce
Confidence                 11245668999999998888999999999988776654    222333322          68999999999999


Q ss_pred             EEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeC
Q 005656          308 LATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM  355 (685)
Q Consensus       308 l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~  355 (685)
                      +|+|+.||.|.+||+.+.+.+..+..-...|..++|+.||..||.|+.
T Consensus       247 faTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  247 FATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             EEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence            999999999999999999999999888788999999999999998874

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=8.9e-28  Score=230.65  Aligned_cols=285  Identities=18%  Similarity=0.286  Sum_probs=240.9

Q ss_pred             ccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCC-EEEEEeCCCceEEEEeecC
Q 005656           46 DNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQDRAFRLFSVIQD  124 (685)
Q Consensus        46 ~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~s~dg~i~vwd~~~~  124 (685)
                      .++|+++.|+|..++|++++.|++++||.++....  ..+..+.--..||.+.+|+|+|. .+++++.-..+..||+.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N--~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a  290 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN--PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA  290 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccC--hhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence            47899999999999999999999999999987543  34555556678999999999998 8899999999999999776


Q ss_pred             ceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCC
Q 005656          125 QQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTA  204 (685)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  204 (685)
                      +..+.-..                                                                 .......
T Consensus       291 k~~k~~~~-----------------------------------------------------------------~g~e~~~  305 (514)
T KOG2055|consen  291 KVTKLKPP-----------------------------------------------------------------YGVEEKS  305 (514)
T ss_pred             ccccccCC-----------------------------------------------------------------CCcccch
Confidence            54322110                                                                 0011345


Q ss_pred             eEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 005656          205 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR  284 (685)
Q Consensus       205 v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~  284 (685)
                      +....++++++++++.+..|.|.+....++..+..+         .-.+.|..++|+.+++.|++++.+|.|.+||++..
T Consensus       306 ~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~---------KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~  376 (514)
T KOG2055|consen  306 MERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF---------KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQN  376 (514)
T ss_pred             hheeEecCCCCeEEEcccCceEEeehhhhhhhhhee---------eeccEEeeEEEecCCcEEEEEcCCceEEEEecCCc
Confidence            678899999999999999999999999999998887         56789999999999999999999999999999999


Q ss_pred             ceEEEeecCCce--eEEEEeecCCEEEEEeCCCeEEEEEcCC------CeeEEEEecCCCCeEEEEEcCCCCEEEEEe--
Q 005656          285 DLKSRWEVGCSL--VKIVYHRVNGLLATVADDLVIRLFDVVA------LRMVRKFEGHTDRITDFCFSEDGKWLLSSG--  354 (685)
Q Consensus       285 ~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~dg~I~i~d~~~------~~~~~~~~~h~~~I~~l~~spdg~~l~s~s--  354 (685)
                      .+++.+...+.+  +.++.++++.+||+|+..|.|.|||..+      .+++..+..-...|+++.|+||+++||.+|  
T Consensus       377 ~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~  456 (514)
T KOG2055|consen  377 SCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRV  456 (514)
T ss_pred             ceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhc
Confidence            999988876555  5567779999999999999999999654      477777777788899999999999999877  


Q ss_pred             CCCcEEEEEcCCCceeeEEeeccc----eEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          355 MDGSLRIWDVILARQIDAIHVDVS----ITALSLSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       355 ~Dg~I~iwd~~~~~~i~~~~~~~~----v~~v~~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                      .+..+|+-.+++......+.....    |+|++|||.|.+||.|..+| .|.+|.+.
T Consensus       457 ~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~g-rv~l~kL~  512 (514)
T KOG2055|consen  457 KKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAG-RVHLFKLH  512 (514)
T ss_pred             cccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCC-ceeeEeec
Confidence            567899999999887777764432    99999999999999999887 99999753

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=2.4e-27  Score=249.05  Aligned_cols=273  Identities=21%  Similarity=0.392  Sum_probs=238.6

Q ss_pred             ccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEe-cccCCCCCeEEEEecCCCEEEEEeCCCceEEEEee
Q 005656           44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRF-RSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI  122 (685)
Q Consensus        44 ~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~-~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~  122 (685)
                      .|...+.+..|.  ..++++++.|++|++|+...+    ..+.. +.||.+.|++++|..-+.++++|+.|.++++||..
T Consensus       206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~----~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~  279 (537)
T KOG0274|consen  206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNG----YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCS  279 (537)
T ss_pred             cCcchhhhheee--cCeEEecCCCceeEEeecccc----eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecC
Confidence            367788899988  568999999999999998776    55555 89999999999998777899999999999999999


Q ss_pred             cCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCC
Q 005656          123 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP  202 (685)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  202 (685)
                      ++.+...+.                                                                    +|.
T Consensus       280 sg~C~~~l~--------------------------------------------------------------------gh~  291 (537)
T KOG0274|consen  280 TGECTHSLQ--------------------------------------------------------------------GHT  291 (537)
T ss_pred             CCcEEEEec--------------------------------------------------------------------CCC
Confidence            999888774                                                                    566


Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005656          203 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  282 (685)
Q Consensus       203 ~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~  282 (685)
                      ..+.++...  +..++.|+.|.+|++|+++++.....+.        +|.++|.++..+  +.++++|+.||+|++||+.
T Consensus       292 stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~--------~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~  359 (537)
T KOG0274|consen  292 SSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLR--------GHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR  359 (537)
T ss_pred             ceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEec--------cccccEEEEEec--CCEEEEEecCceEEEEEhh
Confidence            777776654  4567778999999999999999888774        699999999997  7799999999999999999


Q ss_pred             CCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCC-eeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 005656          283 GRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLR  360 (685)
Q Consensus       283 ~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~  360 (685)
                      +++++..+..+ ..|.++.+.+. ..+++|+.|+.|++||+.+. +++.++.+|.+-+..+.+  .+++|++++.|++|+
T Consensus       360 ~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik  436 (537)
T KOG0274|consen  360 TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIK  436 (537)
T ss_pred             hceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEE
Confidence            99999998876 88999877755 89999999999999999999 999999999999977776  678999999999999


Q ss_pred             EEEcCCCceeeEEeec--cceEEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656          361 IWDVILARQIDAIHVD--VSITALSLSPNMDVLATAHVDQNGVYLWVNRC  408 (685)
Q Consensus       361 iwd~~~~~~i~~~~~~--~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~  408 (685)
                      +||..++++++.+..+  ..|+++++.  ...+++++.|+ .+++|+.+.
T Consensus       437 ~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~-~~~l~dl~~  483 (537)
T KOG0274|consen  437 LWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDG-SVKLWDLRS  483 (537)
T ss_pred             EeecccCceeeeeccCCcccEEEeecC--cceEEEEecCC-eeEEEeccc
Confidence            9999999999999884  558888886  45677777776 999998654

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.4e-28  Score=243.78  Aligned_cols=328  Identities=15%  Similarity=0.219  Sum_probs=258.9

Q ss_pred             EEEEccCCCCEEEEEeCCCcEEEEeCCCCe------eeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656            7 ALAFSSDGQPLLASGASSGVISIWNLEKRR------LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG   80 (685)
Q Consensus         7 ~l~fspdg~~~latg~~dg~I~vwd~~~~~------~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~   80 (685)
                      ++..+..+..+|.||+.||.|++|++..-.      ....++ .|.+.|+.++...+++.|+++|.|-+|++|+..... 
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme-~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-  106 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASME-HHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-  106 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhh-hhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc-
Confidence            444554444489999999999999986422      366777 899999999999999999999999999999887653 


Q ss_pred             CCceeEecccCCCCCeEEEE-ecCCCEEEEEeCCCceEEEEeecCce--eeEechhhHHHHHhhccccccccccCceeee
Q 005656           81 DPRLLRFRSGHSAPPLCIRF-YANGRHILSAGQDRAFRLFSVIQDQQ--SRELSQRHVAKRARKLKMKEEELKLKPVIAF  157 (685)
Q Consensus        81 ~~~~~~~~~~h~~~v~~i~~-~~~~~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (685)
                       .-+..++..|...|.|+++ .++...+++||-|+.|.+||+.++..  ...+...                        
T Consensus       107 -~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~------------------------  161 (735)
T KOG0308|consen  107 -TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNV------------------------  161 (735)
T ss_pred             -chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccc------------------------
Confidence             3567778899999999999 88888999999999999999987743  1111100                        


Q ss_pred             ecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccc
Q 005656          158 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR  237 (685)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~  237 (685)
                                   -.                      .....++...+.+++.++.|..++.|+..+.+++||.+++..+
T Consensus       162 -------------t~----------------------~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~ki  206 (735)
T KOG0308|consen  162 -------------TV----------------------NSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKI  206 (735)
T ss_pred             -------------cc----------------------ccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccce
Confidence                         00                      0000156788999999999999999999999999999999988


Q ss_pred             cccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCe
Q 005656          238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLV  316 (685)
Q Consensus       238 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~  316 (685)
                      ..+.        +|+..|.++..+++|+.++++|.||+|++||+...+++.++..+ ..+.++..+|+-..+++|+.||.
T Consensus       207 mkLr--------GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~  278 (735)
T KOG0308|consen  207 MKLR--------GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGN  278 (735)
T ss_pred             eeee--------ccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCc
Confidence            8775        99999999999999999999999999999999999999888765 66889999999999999999999


Q ss_pred             EEEEEcCCC-eeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-------ce------------------e
Q 005656          317 IRLFDVVAL-RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA-------RQ------------------I  370 (685)
Q Consensus       317 I~i~d~~~~-~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~-------~~------------------i  370 (685)
                      |+.=|+++. +....++ ...+|..+..+.+.+-+-+++.|+.|+-|...-.       .+                  -
T Consensus       279 i~~Tdl~n~~~~tlick-~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~  357 (735)
T KOG0308|consen  279 IYRTDLRNPAKSTLICK-EDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPD  357 (735)
T ss_pred             EEecccCCchhheEeec-CCCchhhhhhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCc
Confidence            999999985 3333333 5566777777654444466677888888865321       11                  1


Q ss_pred             eEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656          371 DAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       371 ~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~  406 (685)
                      ..+.+..++...++-.|.+.++|=...| .+.+||.
T Consensus       358 ~vi~Gg~ai~k~~mL~dkRhVlTkDa~g-nv~lwDI  392 (735)
T KOG0308|consen  358 SVIPGGAAIKKHAMLNDKRHVLTKDAKG-NVALWDI  392 (735)
T ss_pred             eeccCchhhhhhhhhcCcceEeeecCCC-CEEEEEe
Confidence            1122333355666777889999998887 8999984

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=4.5e-27  Score=215.49  Aligned_cols=237  Identities=21%  Similarity=0.312  Sum_probs=200.8

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCc--EEEEecCCCcEEEEEecCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP--VLMSASADNSIKMWIFDTT   78 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~--~l~s~s~D~~v~iWd~~~~   78 (685)
                      |.++|+|++.+  |. ++|+|+.|-+|+|||+.+...+..+. .|.+.|+++.|.++-.  .|++|+.||.|.+|+...-
T Consensus        42 H~~sitavAVs--~~-~~aSGssDetI~IYDm~k~~qlg~ll-~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W  117 (362)
T KOG0294|consen   42 HAGSITALAVS--GP-YVASGSSDETIHIYDMRKRKQLGILL-SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW  117 (362)
T ss_pred             cccceeEEEec--ce-eEeccCCCCcEEEEeccchhhhccee-ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe
Confidence            88999999997  56 99999999999999999999999998 8999999999999775  9999999999999986544


Q ss_pred             CCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeee
Q 005656           79 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD  158 (685)
Q Consensus        79 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (685)
                          .++..+++|.+.|+.++.+|.|+.-++.+.|+.++.|++.+++....+.                           
T Consensus       118 ----~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~---------------------------  166 (362)
T KOG0294|consen  118 ----ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN---------------------------  166 (362)
T ss_pred             ----EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeec---------------------------
Confidence                8899999999999999999999999999999999999998887544442                           


Q ss_pred             cccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccc
Q 005656          159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG  238 (685)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~  238 (685)
                                                                .....+.+.|+|.|.+++++..++ |.+|.+.+.....
T Consensus       167 ------------------------------------------L~~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~  203 (362)
T KOG0294|consen  167 ------------------------------------------LKNKATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFR  203 (362)
T ss_pred             ------------------------------------------cCCcceeeEEcCCCCEEEEEeccE-EEEEecccHhHhh
Confidence                                                      233345589999999999988775 8899888776655


Q ss_pred             ccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEE--eecCCEEEEEeCCC
Q 005656          239 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVY--HRVNGLLATVADDL  315 (685)
Q Consensus       239 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~--~~~~~~l~~~~~dg  315 (685)
                      .+         .....+.++.|.. +..+++|+.|+.|.+||..+..+...+..+ ..|-.+.+  .|++.+|++++.||
T Consensus       204 ~i---------~~~~r~l~~~~l~-~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG  273 (362)
T KOG0294|consen  204 EI---------ENPKRILCATFLD-GSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDG  273 (362)
T ss_pred             hh---------hccccceeeeecC-CceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCc
Confidence            54         2335677777764 567999999999999999988777766554 78888874  45677999999999


Q ss_pred             eEEEEEcCCC
Q 005656          316 VIRLFDVVAL  325 (685)
Q Consensus       316 ~I~i~d~~~~  325 (685)
                      .|+|||++..
T Consensus       274 ~I~vWd~~~~  283 (362)
T KOG0294|consen  274 FIKVWDIDME  283 (362)
T ss_pred             eEEEEEcccc
Confidence            9999999865

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=1.2e-26  Score=244.55  Aligned_cols=248  Identities=17%  Similarity=0.247  Sum_probs=193.5

Q ss_pred             EeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCC-CcEEEEecCCCcEEEEEecCCCCC----CceeEecccCCCCC
Q 005656           21 GASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN-EPVLMSASADNSIKMWIFDTTDGD----PRLLRFRSGHSAPP   95 (685)
Q Consensus        21 g~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~l~s~s~D~~v~iWd~~~~~~~----~~~~~~~~~h~~~v   95 (685)
                      |+.+|.|.+|+......+..+. +|.++|.+++|+|+ +.+|+||+.|++|++|++......    ...+..+.+|...|
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~-gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V  128 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLK-GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI  128 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEc-CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence            5567889999988877788887 99999999999997 789999999999999999764211    12344567999999


Q ss_pred             eEEEEecCCCEE-EEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEE
Q 005656           96 LCIRFYANGRHI-LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH  174 (685)
Q Consensus        96 ~~i~~~~~~~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (685)
                      .+++|+|++..+ ++++.|++|++||+.+++....+                                            
T Consensus       129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i--------------------------------------------  164 (568)
T PTZ00420        129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQI--------------------------------------------  164 (568)
T ss_pred             EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEE--------------------------------------------
Confidence            999999998764 68999999999999877644332                                            


Q ss_pred             cCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcC
Q 005656          175 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGE  254 (685)
Q Consensus       175 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~  254 (685)
                                               .+...|.+++|+|+|+++++++.|+.|++||++++.....+.        +|.+.
T Consensus       165 -------------------------~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~--------gH~g~  211 (568)
T PTZ00420        165 -------------------------NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFH--------IHDGG  211 (568)
T ss_pred             -------------------------ecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEe--------cccCC
Confidence                                     224568999999999999999999999999999998876654        78776


Q ss_pred             EEEE-----EEcCCCCEEEEEECCC----eEEEEECCC-CceEEEeecCCcee---EEEEeecCCEEEEEeCCCeEEEEE
Q 005656          255 VVGV-----ACDSTNTLMISAGYHG----DIKVWDFKG-RDLKSRWEVGCSLV---KIVYHRVNGLLATVADDLVIRLFD  321 (685)
Q Consensus       255 v~~l-----~~~~~~~~l~s~s~dg----~i~iwd~~~-~~~~~~~~~~~~i~---~~~~~~~~~~l~~~~~dg~I~i~d  321 (685)
                      +...     .|++++.++++++.|+    +|++||+++ .+++..+..+....   .....++|.++++|+.|+.|++|+
T Consensus       212 ~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e  291 (568)
T PTZ00420        212 KNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQ  291 (568)
T ss_pred             ceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEE
Confidence            5432     3457888999988774    799999995 56666665543322   223344577899999999999999


Q ss_pred             cCCCeeEEEEe--cCCCCeEEEEEcCCC
Q 005656          322 VVALRMVRKFE--GHTDRITDFCFSEDG  347 (685)
Q Consensus       322 ~~~~~~~~~~~--~h~~~I~~l~~spdg  347 (685)
                      +..+. +..+.  .+..++.+++|.|..
T Consensus       292 ~~~~~-~~~l~~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        292 HSLGS-IRKVNEYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             ccCCc-EEeecccccCCCccceEEcccc
Confidence            98764 22232  256778899999964

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.1e-27  Score=212.93  Aligned_cols=279  Identities=18%  Similarity=0.275  Sum_probs=218.6

Q ss_pred             eEEEEeC--CCcEEE-Ee-----cCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecC-CCEEEEEeCCCceEEEE
Q 005656           50 ISLHFFA--NEPVLM-SA-----SADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRLFS  120 (685)
Q Consensus        50 ~~l~~sp--~~~~l~-s~-----s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~dg~i~vwd  120 (685)
                      +++.|||  .+++.+ ++     ...|++.|-+++.+.+...+ ..+ .-...+..++|+++ .+.+++++.||++++||
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~-~s~-d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d   89 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQEC-QSY-DTEDGLFDVAWSENHENQVIAASGDGSLRLFD   89 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEE-Eee-ecccceeEeeecCCCcceEEEEecCceEEEec
Confidence            6788998  333332 32     13678888887644332222 222 34677899999996 66888999999999999


Q ss_pred             eecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCC
Q 005656          121 VIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE  200 (685)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  200 (685)
                      +.....                                                                   .+...+.
T Consensus        90 ~~~~s~-------------------------------------------------------------------Pi~~~kE  102 (311)
T KOG0277|consen   90 LTMPSK-------------------------------------------------------------------PIHKFKE  102 (311)
T ss_pred             cCCCCc-------------------------------------------------------------------chhHHHh
Confidence            532211                                                                   0111127


Q ss_pred             CCCCeEEEEEcc-CCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCC-CCEEEEEECCCeEEE
Q 005656          201 NPTAVKACTISA-CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMISAGYHGDIKV  278 (685)
Q Consensus       201 ~~~~v~~~~~s~-~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~s~dg~i~i  278 (685)
                      |...|.++.|++ .+..+++++-||+|++|+...+..+.++.        +|...|...+|+|. ...+++++.||++++
T Consensus       103 H~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~--------gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~l  174 (311)
T KOG0277|consen  103 HKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFN--------GHNSCIYQAAFSPHIPNLFASASGDGTLRL  174 (311)
T ss_pred             hhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeec--------CCccEEEEEecCCCCCCeEEEccCCceEEE
Confidence            888999999998 45667888999999999999998888876        99999999999995 578999999999999


Q ss_pred             EECCC-CceEEEeecCCceeEEEEeecC-CEEEEEeCCCeEEEEEcCCC-eeEEEEecCCCCeEEEEEcCCC-CEEEEEe
Q 005656          279 WDFKG-RDLKSRWEVGCSLVKIVYHRVN-GLLATVADDLVIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDG-KWLLSSG  354 (685)
Q Consensus       279 wd~~~-~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~I~~l~~spdg-~~l~s~s  354 (685)
                      ||++. |+......+...+.++.|+.-. +++++|+.|+.|++||++.- .++..+.+|.-.|..+.|||.. ..|++++
T Consensus       175 wdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSas  254 (311)
T KOG0277|consen  175 WDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASAS  254 (311)
T ss_pred             EEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhcc
Confidence            99985 4444433344699999998754 58999999999999999875 5688899999999999999954 5899999


Q ss_pred             CCCcEEEEEcCCC-ceeeEEeeccc-eEEEEEcC-CCCeEEEEEeCCCeEEEEEc
Q 005656          355 MDGSLRIWDVILA-RQIDAIHVDVS-ITALSLSP-NMDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       355 ~Dg~I~iwd~~~~-~~i~~~~~~~~-v~~v~~sp-dg~~Lat~~~d~~~I~lW~~  406 (685)
                      .|-++||||...+ .++.+..+|.. |..+.||+ ++.++|.++-|+ .++||+.
T Consensus       255 YDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe-~l~Vw~p  308 (311)
T KOG0277|consen  255 YDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDE-LLYVWNP  308 (311)
T ss_pred             ccceEEecccccchhhhhhhhccceEEeccccccccCceeeeccccc-ceeeecc
Confidence            9999999998844 45666777777 89999998 577999999998 8999973

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.96  E-value=6.5e-26  Score=230.00  Aligned_cols=284  Identities=13%  Similarity=0.149  Sum_probs=219.8

Q ss_pred             EEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEE-EEecCCCcEEEEEecCCCCCCceeEecccCCCCC
Q 005656           17 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL-MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP   95 (685)
Q Consensus        17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l-~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v   95 (685)
                      ++++++.||.|.+||+.+++....+. .|. .+.+++|+|+++.+ ++++.++.|++||..++    +....+..+.. +
T Consensus         3 ~~~s~~~d~~v~~~d~~t~~~~~~~~-~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~----~~~~~~~~~~~-~   75 (300)
T TIGR03866         3 AYVSNEKDNTISVIDTATLEVTRTFP-VGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATG----EVIGTLPSGPD-P   75 (300)
T ss_pred             EEEEecCCCEEEEEECCCCceEEEEE-CCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCC----cEEEeccCCCC-c
Confidence            78899999999999999999888886 444 46789999999876 56778999999998765    44444444433 5


Q ss_pred             eEEEEecCCCEEEEE-eCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEE
Q 005656           96 LCIRFYANGRHILSA-GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH  174 (685)
Q Consensus        96 ~~i~~~~~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (685)
                      ..++|+|+++.++++ +.|+.+++||+.+.+....+.                                           
T Consensus        76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~-------------------------------------------  112 (300)
T TIGR03866        76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP-------------------------------------------  112 (300)
T ss_pred             cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee-------------------------------------------
Confidence            678999999877655 568999999997655433321                                           


Q ss_pred             cCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCC-cEEEEECCCCccccccccccccccCCCCc
Q 005656          175 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG-WIERFNLQSGISRGSYLDMSERSNYAHNG  253 (685)
Q Consensus       175 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg-~i~~~d~~~~~~~~~~~~~~~~~~~~h~~  253 (685)
                                                ....+.+++++|+|++++++..++ .+.+||..++......         ....
T Consensus       113 --------------------------~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~---------~~~~  157 (300)
T TIGR03866       113 --------------------------VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV---------LVDQ  157 (300)
T ss_pred             --------------------------CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE---------EcCC
Confidence                                      122356799999999999988875 4677898877654433         1223


Q ss_pred             CEEEEEEcCCCCEEEEE-ECCCeEEEEECCCCceEEEeecC--------CceeEEEEeecCCEEEEE-eCCCeEEEEEcC
Q 005656          254 EVVGVACDSTNTLMISA-GYHGDIKVWDFKGRDLKSRWEVG--------CSLVKIVYHRVNGLLATV-ADDLVIRLFDVV  323 (685)
Q Consensus       254 ~v~~l~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~--------~~i~~~~~~~~~~~l~~~-~~dg~I~i~d~~  323 (685)
                      .+.+++|++++++++++ ..++.|++||+.+++....+...        .....++|+|++++++++ +.++.+.+||+.
T Consensus       158 ~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~  237 (300)
T TIGR03866       158 RPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK  237 (300)
T ss_pred             CccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECC
Confidence            45679999999988655 46899999999998877665432        123468899999976554 556789999999


Q ss_pred             CCeeEEEEecCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCceeeEEeeccceEEEEEcC
Q 005656          324 ALRMVRKFEGHTDRITDFCFSEDGKWLLSS-GMDGSLRIWDVILARQIDAIHVDVSITALSLSP  386 (685)
Q Consensus       324 ~~~~~~~~~~h~~~I~~l~~spdg~~l~s~-s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~sp  386 (685)
                      +++.+..+. +...+.+++|+|+|++|+++ +.+|.|++||+.+++++..+..+..++.++++|
T Consensus       238 ~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~  300 (300)
T TIGR03866       238 TYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP  300 (300)
T ss_pred             CCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence            988876654 44579999999999999876 468999999999999999999887789999876

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.96  E-value=3.7e-27  Score=236.98  Aligned_cols=376  Identities=19%  Similarity=0.245  Sum_probs=274.4

Q ss_pred             EEEEcc-CCCCEEEEEeCCCcEEEEeCCCC--eeeEEeecccccCeeEEEEeCCCc---EEEEecCCCcEEEEEecCCCC
Q 005656            7 ALAFSS-DGQPLLASGASSGVISIWNLEKR--RLQSVIREAHDNAIISLHFFANEP---VLMSASADNSIKMWIFDTTDG   80 (685)
Q Consensus         7 ~l~fsp-dg~~~latg~~dg~I~vwd~~~~--~~~~~~~~~h~~~V~~l~~sp~~~---~l~s~s~D~~v~iWd~~~~~~   80 (685)
                      |+++.| .+..++|.|+.+..|.++.-...  +....+. ||.+.|.+++|..-+.   +|+|+|.|..||||.+...+.
T Consensus       150 cL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~-GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~  228 (764)
T KOG1063|consen  150 CLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELE-GHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDD  228 (764)
T ss_pred             HHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEee-ccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCC
Confidence            556666 56678888999988999876543  4566777 9999999999987544   899999999999998865431


Q ss_pred             CC-----------------cee----------EecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceee--Eec
Q 005656           81 DP-----------------RLL----------RFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR--ELS  131 (685)
Q Consensus        81 ~~-----------------~~~----------~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~--~~~  131 (685)
                      ..                 ..+          ..+.||...|.++.|+|.+..|++++.|.++.+|......-+-  ...
T Consensus       229 ~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vR  308 (764)
T KOG1063|consen  229 EDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVR  308 (764)
T ss_pred             ccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEE
Confidence            10                 111          2245999999999999999999999999999999876553211  111


Q ss_pred             hhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEc
Q 005656          132 QRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS  211 (685)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s  211 (685)
                      .+.....              ..-.+.+..   ....+.+.++.-.+..+.|...+.. .-.......+|...|+.++|+
T Consensus       309 lGe~gg~--------------a~GF~g~lw---~~n~~~ii~~g~~Gg~hlWkt~d~~-~w~~~~~iSGH~~~V~dv~W~  370 (764)
T KOG1063|consen  309 LGEVGGS--------------AGGFWGGLW---SPNSNVIIAHGRTGGFHLWKTKDKT-FWTQEPVISGHVDGVKDVDWD  370 (764)
T ss_pred             eeccccc--------------ccceeeEEE---cCCCCEEEEecccCcEEEEeccCcc-ceeeccccccccccceeeeec
Confidence            1100000              000000000   0112678888889999999832221 112223345889999999999


Q ss_pred             cCCCEEEEEecCCcEEEEECCCCccc-cccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCC------
Q 005656          212 ACGNFAVLGTAGGWIERFNLQSGISR-GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR------  284 (685)
Q Consensus       212 ~~g~~l~~g~~dg~i~~~d~~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~------  284 (685)
                      |.|.|+++.+.|-+-++|-.-..+.. ..+.     ...-|.-.++|+++-+....+++|.....+|+|+....      
T Consensus       371 psGeflLsvs~DQTTRlFa~wg~q~~wHEia-----RPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~  445 (764)
T KOG1063|consen  371 PSGEFLLSVSLDQTTRLFARWGRQQEWHEIA-----RPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLM  445 (764)
T ss_pred             CCCCEEEEeccccceeeecccccccceeeec-----ccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHH
Confidence            99999999999999999865521111 1111     22268888999999886777899988899999965421      


Q ss_pred             -------------------------------------ce----------------------------------EEEeecC
Q 005656          285 -------------------------------------DL----------------------------------KSRWEVG  293 (685)
Q Consensus       285 -------------------------------------~~----------------------------------~~~~~~~  293 (685)
                                                           ..                                  ...+.|+
T Consensus       446 ~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHG  525 (764)
T KOG1063|consen  446 AICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHG  525 (764)
T ss_pred             HHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCc
Confidence                                                 00                                  0111233


Q ss_pred             CceeEEEEeecCCEEEEEeCC-----CeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 005656          294 CSLVKIVYHRVNGLLATVADD-----LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR  368 (685)
Q Consensus       294 ~~i~~~~~~~~~~~l~~~~~d-----g~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~  368 (685)
                      ..|.+++.+|+++++|+++..     ..|++|+..+...+..+.+|.-.|+.++|||||++|+++|.|.++.+|......
T Consensus       526 yEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~  605 (764)
T KOG1063|consen  526 YEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDI  605 (764)
T ss_pred             eeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeeccc
Confidence            568999999999999999864     379999999999999999999999999999999999999999999999875432


Q ss_pred             e----eeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          369 Q----IDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       369 ~----i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                      .    ....+.|.. |+++.|+|++.++||++.|. .|.+|...
T Consensus       606 ~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK-~VkVW~~~  648 (764)
T KOG1063|consen  606 KDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDK-KVKVWEEP  648 (764)
T ss_pred             chhhhhccccccceEEEEcccCcccceeEEecCCc-eEEEEecc
Confidence            2    122445665 99999999999999999998 99999754

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=1.3e-28  Score=229.31  Aligned_cols=283  Identities=15%  Similarity=0.254  Sum_probs=227.4

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG   80 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~   80 (685)
                      |+++|.|++=+|..-..+|+|+.||.|+|||+.+..+..+++ +|.+.|..|++..  ..++++|.|.+|+.|.++..  
T Consensus        65 HrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~-AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~--  139 (433)
T KOG0268|consen   65 HRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFK-AHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP--  139 (433)
T ss_pred             cccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheee-cccCceeeEEecc--cceEEecCCcceeeeeccCC--
Confidence            889999999999874489999999999999999999999999 9999999999986  68899999999999987763  


Q ss_pred             CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656           81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  160 (685)
Q Consensus        81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (685)
                         .++++.+ ...+..|.-+..+..++|||.  .|.|||.........+.                             
T Consensus       140 ---p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~sms-----------------------------  184 (433)
T KOG0268|consen  140 ---PLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMS-----------------------------  184 (433)
T ss_pred             ---cceeeec-cccccccccccccccccccCc--eeeecccccCCccceee-----------------------------
Confidence               3444322 345666776666778888876  48999987766555543                             


Q ss_pred             cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCE-EEEEecCCcEEEEECCCCccccc
Q 005656          161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNF-AVLGTAGGWIERFNLQSGISRGS  239 (685)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~g~~dg~i~~~d~~~~~~~~~  239 (685)
                                                             .....+.++.|+|.... |+++.+|+.|.+||++.+.+...
T Consensus       185 ---------------------------------------wG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~K  225 (433)
T KOG0268|consen  185 ---------------------------------------WGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKK  225 (433)
T ss_pred             ---------------------------------------cCCCceeEEecCCCcchheeeeccCCceEEEecccCCccce
Confidence                                                   33567899999997655 55566999999999999988877


Q ss_pred             cccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc-eEEEee-cCCceeEEEEeecCCEEEEEeCCCeE
Q 005656          240 YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD-LKSRWE-VGCSLVKIVYHRVNGLLATVADDLVI  317 (685)
Q Consensus       240 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~I  317 (685)
                      .         .-...-+.|+|+|..-.+++++.|..++.||++... ++.... +.+.+.++.|+|.|+-+++|+-|.+|
T Consensus       226 V---------i~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksI  296 (433)
T KOG0268|consen  226 V---------ILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSI  296 (433)
T ss_pred             e---------eeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceE
Confidence            6         334566789999988888999999999999998643 333333 34889999999999999999999999


Q ss_pred             EEEEcCCCeeEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceee
Q 005656          318 RLFDVVALRMVRKFE-GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQID  371 (685)
Q Consensus       318 ~i~d~~~~~~~~~~~-~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~  371 (685)
                      +||....+..--.+. .--..|.++.||.|.+|+++||.|+.|++|.....+.+.
T Consensus       297 RIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklg  351 (433)
T KOG0268|consen  297 RIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLG  351 (433)
T ss_pred             EEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcC
Confidence            999988764322221 112459999999999999999999999999877655443

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.96  E-value=9.2e-28  Score=232.19  Aligned_cols=283  Identities=13%  Similarity=0.243  Sum_probs=241.4

Q ss_pred             ccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecc--cCCCCCeEEEEecCCCEEEEEeCCCceEEEEe
Q 005656           44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS--GHSAPPLCIRFYANGRHILSAGQDRAFRLFSV  121 (685)
Q Consensus        44 ~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~--~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~  121 (685)
                      .|..-|.++..+...+.++||+. |.|+|||+...... ..+..+.  ....-|.++...|||+.|++|+.-.++.|||+
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k-~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL  494 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNK-SPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL  494 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCC-CccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence            58888899999999999999875 78999999765322 2222222  23567889999999999999999999999999


Q ss_pred             ecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCC
Q 005656          122 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN  201 (685)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  201 (685)
                      .........                                                                  .....
T Consensus       495 AapTprika------------------------------------------------------------------eltss  508 (705)
T KOG0639|consen  495 AAPTPRIKA------------------------------------------------------------------ELTSS  508 (705)
T ss_pred             cCCCcchhh------------------------------------------------------------------hcCCc
Confidence            655421111                                                                  00022


Q ss_pred             CCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005656          202 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF  281 (685)
Q Consensus       202 ~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~  281 (685)
                      .....+++++||.+..++++.||.|.+||+.+...++.|.        +|...+.||.++++|..|.||+.|.+|+.||+
T Consensus       509 apaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq--------GhtDGascIdis~dGtklWTGGlDntvRcWDl  580 (705)
T KOG0639|consen  509 APACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ--------GHTDGASCIDISKDGTKLWTGGLDNTVRCWDL  580 (705)
T ss_pred             chhhhhhhcCCccceeeeeccCCcEEEEEcccceeeeccc--------CCCCCceeEEecCCCceeecCCCccceeehhh
Confidence            2346788999999999999999999999999999998886        99999999999999999999999999999999


Q ss_pred             CCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 005656          282 KGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRI  361 (685)
Q Consensus       282 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~i  361 (685)
                      +.++.+......+.|.++.++|.+.++++|..++.+.|......+ ...+.-|.+-|.++.|++.|+|+++.+.|..+..
T Consensus       581 regrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~-kyqlhlheScVLSlKFa~cGkwfvStGkDnlLna  659 (705)
T KOG0639|consen  581 REGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNA  659 (705)
T ss_pred             hhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCcc-ceeecccccEEEEEEecccCceeeecCchhhhhh
Confidence            999999888888999999999999999999999999998876444 3456679999999999999999999999999999


Q ss_pred             EEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEE
Q 005656          362 WDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLW  404 (685)
Q Consensus       362 wd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW  404 (685)
                      |..+-|..+...+..++|.++..|.|.+|++||+.|. .-.||
T Consensus       660 wrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdk-kATVY  701 (705)
T KOG0639|consen  660 WRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDK-KATVY  701 (705)
T ss_pred             ccCccccceeeccccCcceeeeeccCceEEEecCCCc-ceEEE
Confidence            9999999999998899999999999999999999885 45555

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=4.3e-26  Score=236.68  Aligned_cols=277  Identities=14%  Similarity=0.318  Sum_probs=229.4

Q ss_pred             cccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEee
Q 005656           43 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI  122 (685)
Q Consensus        43 ~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~  122 (685)
                      .+|+.+-+.++|.|+|.+|++++.||.|++|+.......++.+.   .+...|.+++..  +.+|++|+.+++|.+|.+.
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~---~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fp   84 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID---ISGELVSSIACY--SNHFLTGSEQNTVLRYKFP   84 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh---ccCceeEEEeec--ccceEEeeccceEEEeeCC
Confidence            47999999999999999999999999999998766533444332   267777777764  5599999999999999987


Q ss_pred             cCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCC
Q 005656          123 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP  202 (685)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  202 (685)
                      .+.....+.                                                                    ...
T Consensus        85 s~~~~~iL~--------------------------------------------------------------------Rft   96 (933)
T KOG1274|consen   85 SGEEDTILA--------------------------------------------------------------------RFT   96 (933)
T ss_pred             CCCccceee--------------------------------------------------------------------eee
Confidence            765433221                                                                    335


Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005656          203 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  282 (685)
Q Consensus       203 ~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~  282 (685)
                      -++++++++.+|++++.|++|-.|++.++........+.        +|.++|.++.++|.+.+||+.+.||.|++||+.
T Consensus        97 lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr--------gh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~  168 (933)
T KOG1274|consen   97 LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR--------GHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQ  168 (933)
T ss_pred             ccceEEEEecCCcEEEeecCceeEEEEeccccchheeec--------ccCCceeeeeEcCCCCEEEEEecCceEEEEEcc
Confidence            678999999999999999999999999999888777665        999999999999999999999999999999999


Q ss_pred             CCceEEEeec---------CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEec--CCCCeEEEEEcCCCCEEE
Q 005656          283 GRDLKSRWEV---------GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG--HTDRITDFCFSEDGKWLL  351 (685)
Q Consensus       283 ~~~~~~~~~~---------~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~--h~~~I~~l~~spdg~~l~  351 (685)
                      ++.+..++..         ...+..++|+|+|..+++.+.|+.|++|+..++.....++.  |...+++++|||+|+|||
T Consensus       169 ~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiA  248 (933)
T KOG1274|consen  169 DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIA  248 (933)
T ss_pred             cchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEe
Confidence            9877665543         25577899999999999999999999999999988887764  445599999999999999


Q ss_pred             EEeCCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEE
Q 005656          352 SSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLW  404 (685)
Q Consensus       352 s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW  404 (685)
                      +++.||.|.|||+.+   ..+-.....|.+++|-|++.-+-.....| ...+|
T Consensus       249 As~~~g~I~vWnv~t---~~~~~~~~~Vc~~aw~p~~n~it~~~~~g-~~~~~  297 (933)
T KOG1274|consen  249 ASTLDGQILVWNVDT---HERHEFKRAVCCEAWKPNANAITLITALG-TLGVS  297 (933)
T ss_pred             eeccCCcEEEEeccc---chhccccceeEEEecCCCCCeeEEEeecc-ccccC
Confidence            999999999999998   22222344599999999998776666554 44444

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1e-26  Score=234.67  Aligned_cols=272  Identities=18%  Similarity=0.289  Sum_probs=226.5

Q ss_pred             EEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEe
Q 005656           51 SLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSREL  130 (685)
Q Consensus        51 ~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~  130 (685)
                      -+.|+. .+.|+.|. ...|.+|+..++    ........+...|+++.|+++|.+|++|..+|.|.|||..+.+....+
T Consensus       182 lldWss-~n~laVal-g~~vylW~~~s~----~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~  255 (484)
T KOG0305|consen  182 LLDWSS-ANVLAVAL-GQSVYLWSASSG----SVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTL  255 (484)
T ss_pred             Hhhccc-CCeEEEEe-cceEEEEecCCC----ceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccc
Confidence            356773 44666664 458999987765    333333334899999999999999999999999999999877665554


Q ss_pred             chhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEE
Q 005656          131 SQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTI  210 (685)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~  210 (685)
                      ..                                                                   .|...|.+++|
T Consensus       256 ~~-------------------------------------------------------------------~h~~rvg~laW  268 (484)
T KOG0305|consen  256 RG-------------------------------------------------------------------SHASRVGSLAW  268 (484)
T ss_pred             cC-------------------------------------------------------------------CcCceeEEEec
Confidence            31                                                                   26788999999


Q ss_pred             ccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEe
Q 005656          211 SACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRW  290 (685)
Q Consensus       211 s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  290 (685)
                      .  +..+.+|+.+|.|..+|++........       ..+|...|.++.|++++.++++|+.|+.+.|||.....+...+
T Consensus       269 ~--~~~lssGsr~~~I~~~dvR~~~~~~~~-------~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~  339 (484)
T KOG0305|consen  269 N--SSVLSSGSRDGKILNHDVRISQHVVST-------LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTF  339 (484)
T ss_pred             c--CceEEEecCCCcEEEEEEecchhhhhh-------hhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEE
Confidence            8  788999999999999999988776652       1289999999999999999999999999999999766665555


Q ss_pred             -ecCCceeEEEEeecC-CEEEEEe--CCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEEc
Q 005656          291 -EVGCSLVKIVYHRVN-GLLATVA--DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG--MDGSLRIWDV  364 (685)
Q Consensus       291 -~~~~~i~~~~~~~~~-~~l~~~~--~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s--~Dg~I~iwd~  364 (685)
                       .+.+.|..++|+|-. .+||+|+  .|+.|++||..+++.+..+. -.+.|..+.|++..+-|+++.  .++.|.||+.
T Consensus       340 ~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~  418 (484)
T KOG0305|consen  340 TEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKY  418 (484)
T ss_pred             eccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEec
Confidence             455999999999965 4888875  48999999999999998886 457799999999987777653  5678999999


Q ss_pred             CCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656          365 ILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       365 ~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~~  406 (685)
                      ++.+.+..+..|.. |..+++||||..+++|+.|+ ++++|+.
T Consensus       419 ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DE-Tlrfw~~  460 (484)
T KOG0305|consen  419 PSMKLVAELLGHTSRVLYLALSPDGETIVTGAADE-TLRFWNL  460 (484)
T ss_pred             cccceeeeecCCcceeEEEEECCCCCEEEEecccC-cEEeccc
Confidence            99999999887766 99999999999999999998 9999974

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=3.6e-27  Score=227.15  Aligned_cols=291  Identities=18%  Similarity=0.190  Sum_probs=231.9

Q ss_pred             CcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEec-CCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecC
Q 005656           25 GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN  103 (685)
Q Consensus        25 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s-~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~  103 (685)
                      .++.+||+.+|....+++.+-...-.++.... +.+++++. ....+.+|.+......    ....--.++|.+++-+|+
T Consensus        18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~-~~yllsaq~~rp~l~vw~i~k~~~~----~q~~v~Pg~v~al~s~n~   92 (476)
T KOG0646|consen   18 INCIVWDLRTGTSLLQYKGSYLAQAASLTALN-NEYLLSAQLKRPLLHVWEILKKDQV----VQYIVLPGPVHALASSNL   92 (476)
T ss_pred             cceeEEecCCCceeEEecCcccccchhhhhhc-hhheeeecccCccccccccCchhhh----hhhcccccceeeeecCCC
Confidence            45999999999998888733122222333222 24555554 4568999987665321    122235678999999999


Q ss_pred             CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEE
Q 005656          104 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW  183 (685)
Q Consensus       104 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  183 (685)
                      |.+|+.|+-.|.|.+|.+.+|.....+.                                                    
T Consensus        93 G~~l~ag~i~g~lYlWelssG~LL~v~~----------------------------------------------------  120 (476)
T KOG0646|consen   93 GYFLLAGTISGNLYLWELSSGILLNVLS----------------------------------------------------  120 (476)
T ss_pred             ceEEEeecccCcEEEEEeccccHHHHHH----------------------------------------------------
Confidence            9999988899999999999987655543                                                    


Q ss_pred             EcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccc-cccccccccccCCCCcCEEEEEEcC
Q 005656          184 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR-GSYLDMSERSNYAHNGEVVGVACDS  262 (685)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~~~  262 (685)
                                      .|-..|+|+.|+.||.++++|+.||.|.+|.+-.-... ......+......|.-+|+++...+
T Consensus       121 ----------------aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~  184 (476)
T KOG0646|consen  121 ----------------AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGS  184 (476)
T ss_pred             ----------------hhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecC
Confidence                            67788999999999999999999999999987432110 0001222234458999999999877


Q ss_pred             C--CCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCC---------------
Q 005656          263 T--NTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL---------------  325 (685)
Q Consensus       263 ~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~---------------  325 (685)
                      .  +.+++|+|.|.++++||+..+.++.++..+..+.+++.+|.++.+++|+.+|.|.+.++...               
T Consensus       185 Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~  264 (476)
T KOG0646|consen  185 GGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEE  264 (476)
T ss_pred             CCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccc
Confidence            5  46899999999999999999999999999999999999999999999999999999887532               


Q ss_pred             -eeEEEEecCCC--CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEe-eccceEEEEEcCCC
Q 005656          326 -RMVRKFEGHTD--RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH-VDVSITALSLSPNM  388 (685)
Q Consensus       326 -~~~~~~~~h~~--~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~-~~~~v~~v~~spdg  388 (685)
                       ..+..+.||.+  .|+|++.+-||..|++|+.||.|+|||+.+.++++++. ..++|+.+.+.|=-
T Consensus       265 ~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~  331 (476)
T KOG0646|consen  265 NTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLE  331 (476)
T ss_pred             cceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccc
Confidence             34667789998  99999999999999999999999999999999999988 67779999986643

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=3.8e-27  Score=215.64  Aligned_cols=279  Identities=17%  Similarity=0.294  Sum_probs=215.2

Q ss_pred             eeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceee
Q 005656           49 IISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR  128 (685)
Q Consensus        49 V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~  128 (685)
                      ..|+.|++.|.+||+|+.||.|.|||+.+.    .+-+.+.+|..||++++|+++|+.|++++.|..|.+||+..+...+
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~----~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~  101 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF----RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLK  101 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEcccc----chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCcee
Confidence            789999999999999999999999999997    6777889999999999999999999999999999999999988776


Q ss_pred             EechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEE
Q 005656          129 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKAC  208 (685)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~  208 (685)
                      .+                                                                     ...++|..+
T Consensus       102 ri---------------------------------------------------------------------rf~spv~~~  112 (405)
T KOG1273|consen  102 RI---------------------------------------------------------------------RFDSPVWGA  112 (405)
T ss_pred             EE---------------------------------------------------------------------EccCcccee
Confidence            66                                                                     235678888


Q ss_pred             EEccCC-CEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceE
Q 005656          209 TISACG-NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLK  287 (685)
Q Consensus       209 ~~s~~g-~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~  287 (685)
                      .|+|.. +..++.-.+..-.+.++..+.+...-..    ....-+..-.+..|++.|+++++|...|.+.++|..+.+++
T Consensus       113 q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d----~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~v  188 (405)
T KOG1273|consen  113 QWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKD----DDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECV  188 (405)
T ss_pred             eeccccCCeEEEEEecCCcEEEEecCCceeeccCC----CccccccccccccccCCCCEEEEecCcceEEEEecchheee
Confidence            888844 3333333344444555544332211110    00011122233478999999999999999999999999998


Q ss_pred             EEeecC--CceeEEEEeecCCEEEEEeCCCeEEEEEcCCC-------ee--EEEEec--CCCCeEEEEEcCCCCEEEEEe
Q 005656          288 SRWEVG--CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-------RM--VRKFEG--HTDRITDFCFSEDGKWLLSSG  354 (685)
Q Consensus       288 ~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~-------~~--~~~~~~--h~~~I~~l~~spdg~~l~s~s  354 (685)
                      ..+...  ..|..+.++..|+.+++.+.|..||.|+++.-       ++  .+++..  ....-.+++||.||.|++.++
T Consensus       189 as~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s  268 (405)
T KOG1273|consen  189 ASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGS  268 (405)
T ss_pred             eeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEecc
Confidence            877764  68899999999999999999999999998631       11  111111  112345789999999999877


Q ss_pred             -CCCcEEEEEcCCCceeeEEeeccc--eEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656          355 -MDGSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       355 -~Dg~I~iwd~~~~~~i~~~~~~~~--v~~v~~spdg~~Lat~~~d~~~I~lW~~  406 (685)
                       .-..++||.-..|.++..+++..+  ...+.|+|-...+++-  +.+.|++|..
T Consensus       269 ~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si--~sg~v~iw~~  321 (405)
T KOG1273|consen  269 ARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI--ASGVVYIWAV  321 (405)
T ss_pred             ccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec--cCCceEEEEe
Confidence             446799999999999999998764  8899999998888887  3348999973

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.3e-27  Score=238.46  Aligned_cols=293  Identities=17%  Similarity=0.232  Sum_probs=242.9

Q ss_pred             EEEEe-CCCcEEEEecCCCcEEEEEecCCCCC--CceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCcee
Q 005656           51 SLHFF-ANEPVLMSASADNSIKMWIFDTTDGD--PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQS  127 (685)
Q Consensus        51 ~l~~s-p~~~~l~s~s~D~~v~iWd~~~~~~~--~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~  127 (685)
                      .+..+ |++++|+|||.||.|++|++......  ......+..|...|+.+....+|+.|+++|.|-+|++|+...+.. 
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~-  107 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT-  107 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc-
Confidence            34444 46678999999999999998766443  234667788999999999999999999999999999999865520 


Q ss_pred             eEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEE
Q 005656          128 RELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKA  207 (685)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~  207 (685)
                                                                                       .+......|...|.|
T Consensus       108 -----------------------------------------------------------------~c~stir~H~DYVkc  122 (735)
T KOG0308|consen  108 -----------------------------------------------------------------FCMSTIRTHKDYVKC  122 (735)
T ss_pred             -----------------------------------------------------------------hhHhhhhcccchhee
Confidence                                                                             111222378899999


Q ss_pred             EEE-ccCCCEEEEEecCCcEEEEECCCC--ccccccccccccccC-CCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005656          208 CTI-SACGNFAVLGTAGGWIERFNLQSG--ISRGSYLDMSERSNY-AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG  283 (685)
Q Consensus       208 ~~~-s~~g~~l~~g~~dg~i~~~d~~~~--~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~  283 (685)
                      +++ -++...+++|+-|+.|.+||+.++  .....+......... ++..+|.+++.++.|..+++|+..+.+++||.++
T Consensus       123 la~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt  202 (735)
T KOG0308|consen  123 LAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRT  202 (735)
T ss_pred             eeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEecccc
Confidence            999 788889999999999999999988  345555444433333 8899999999999999999999999999999999


Q ss_pred             CceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005656          284 RDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIW  362 (685)
Q Consensus       284 ~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iw  362 (685)
                      ++.+..+..| ..|.++..++||..+++++.||+|++||+...+++.++..|...|.++..+|+-..+++|+.||.|..=
T Consensus       203 ~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~T  282 (735)
T KOG0308|consen  203 CKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRT  282 (735)
T ss_pred             ccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEec
Confidence            8877777655 899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCC-CceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEcCCCc
Q 005656          363 DVIL-ARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMF  410 (685)
Q Consensus       363 d~~~-~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~~~  410 (685)
                      |+.+ .++...++...+|..+..+...+-+-+++.|+ .|.-|.....+
T Consensus       283 dl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds-~I~rW~~~~~~  330 (735)
T KOG0308|consen  283 DLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDS-SIKRWKLEPDI  330 (735)
T ss_pred             ccCCchhheEeecCCCchhhhhhccccCCceeeeccc-cceecCCcccc
Confidence            9998 55666667777888888875544445566676 89999765544

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=3e-26  Score=208.87  Aligned_cols=274  Identities=16%  Similarity=0.235  Sum_probs=220.2

Q ss_pred             cccccCeeEEEEeC-CCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEe
Q 005656           43 EAHDNAIISLHFFA-NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV  121 (685)
Q Consensus        43 ~~h~~~V~~l~~sp-~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~  121 (685)
                      ..-.+.|.+|+||| ...+++.+|-||+||+|++... +.... +....|.++|.+++|+.||..+++|+.|+.+++||+
T Consensus        24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~-g~~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL  101 (347)
T KOG0647|consen   24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNS-GQLVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDL  101 (347)
T ss_pred             CCcccchheeEeccccCceEEecccCCceEEEEEecC-Ccccc-hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEc
Confidence            35678999999999 4556778899999999999874 21111 455679999999999999999999999999999999


Q ss_pred             ecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCC
Q 005656          122 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN  201 (685)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  201 (685)
                      .+++....-                                                                     .|
T Consensus       102 ~S~Q~~~v~---------------------------------------------------------------------~H  112 (347)
T KOG0647|consen  102 ASGQVSQVA---------------------------------------------------------------------AH  112 (347)
T ss_pred             cCCCeeeee---------------------------------------------------------------------ec
Confidence            988543322                                                                     67


Q ss_pred             CCCeEEEEEccCCC--EEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEE
Q 005656          202 PTAVKACTISACGN--FAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW  279 (685)
Q Consensus       202 ~~~v~~~~~s~~g~--~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw  279 (685)
                      ..+|.++.|-+..+  .|++|+-|.+|+.||+++...+.++         .-...+.++.+  ....++.+..++.|.+|
T Consensus       113 d~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~---------~LPeRvYa~Dv--~~pm~vVata~r~i~vy  181 (347)
T KOG0647|consen  113 DAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATL---------QLPERVYAADV--LYPMAVVATAERHIAVY  181 (347)
T ss_pred             ccceeEEEEecCCCcceeEecccccceeecccCCCCeeeee---------eccceeeehhc--cCceeEEEecCCcEEEE
Confidence            88999999988776  8999999999999999988777665         33455666554  34578888889999999


Q ss_pred             ECCCCceEEE-e--ecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCC--eeEEEEecCCC---------CeEEEEEcC
Q 005656          280 DFKGRDLKSR-W--EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL--RMVRKFEGHTD---------RITDFCFSE  345 (685)
Q Consensus       280 d~~~~~~~~~-~--~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~--~~~~~~~~h~~---------~I~~l~~sp  345 (685)
                      +++++..... .  .....+.|++..++....|.|+-.|.+.|..+..+  +.-.+|+.|..         .|++++|+|
T Consensus       182 nL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP  261 (347)
T KOG0647|consen  182 NLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHP  261 (347)
T ss_pred             EcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeec
Confidence            9976543221 1  23367899999999998899999999999999886  44456666753         478999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeeEEe-eccceEEEEEcCCCCeEEEEEeCC
Q 005656          346 DGKWLLSSGMDGSLRIWDVILARQIDAIH-VDVSITALSLSPNMDVLATAHVDQ  398 (685)
Q Consensus       346 dg~~l~s~s~Dg~I~iwd~~~~~~i~~~~-~~~~v~~v~~spdg~~Lat~~~d~  398 (685)
                      .-..|+|++.||++.+||-.....+.... ++.+|++.+|+.+|.++|.+..-+
T Consensus       262 ~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD  315 (347)
T KOG0647|consen  262 VHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYD  315 (347)
T ss_pred             ccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence            98899999999999999988776666644 566799999999999999886544

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.95  E-value=1.6e-26  Score=220.35  Aligned_cols=281  Identities=17%  Similarity=0.264  Sum_probs=240.6

Q ss_pred             ccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCc
Q 005656           46 DNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ  125 (685)
Q Consensus        46 ~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~  125 (685)
                      ...+.++...|..+.++||+.|.++.++|...+    +.+..+.||...|+.+.|+|+...+++++.|..|++|......
T Consensus       219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~----q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s  294 (506)
T KOG0289|consen  219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSN----QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS  294 (506)
T ss_pred             CCCeeEEeecCCCCcceecCCCCceEEEecchh----hhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc
Confidence            356888888888789999999999999998887    8899999999999999999999999999999999999986554


Q ss_pred             eeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCe
Q 005656          126 QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAV  205 (685)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v  205 (685)
                      .....                                                                    ..|..+|
T Consensus       295 ~~~~~--------------------------------------------------------------------~~h~~~V  306 (506)
T KOG0289|consen  295 EPTSS--------------------------------------------------------------------RPHEEPV  306 (506)
T ss_pred             Ccccc--------------------------------------------------------------------ccccccc
Confidence            32221                                                                    1678899


Q ss_pred             EEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Q 005656          206 KACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD  285 (685)
Q Consensus       206 ~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~  285 (685)
                      +.+..+|.|.|++.++.||+..+.|+++|........      ....-.+++.+|+|||..+.+|..||.|+|||+.++.
T Consensus       307 ~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~------~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~  380 (506)
T KOG0289|consen  307 TGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSD------ETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT  380 (506)
T ss_pred             eeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEee------ccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc
Confidence            9999999999999999999999999999988766521      0223458999999999999999999999999999998


Q ss_pred             eEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005656          286 LKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT-DRITDFCFSEDGKWLLSSGMDGSLRIWD  363 (685)
Q Consensus       286 ~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~-~~I~~l~~spdg~~l~s~s~Dg~I~iwd  363 (685)
                      ....+..+ ++|..+.|+.+|-+||++++|+.|++||++..+...++.-.. ..|.++.|.+.|.+|+.++.|=+|++++
T Consensus       381 ~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~  460 (506)
T KOG0289|consen  381 NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICK  460 (506)
T ss_pred             ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence            88888766 899999999999999999999999999999988887776432 3699999999999999998876666666


Q ss_pred             cC--CCceeeEEeecc-ceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656          364 VI--LARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       364 ~~--~~~~i~~~~~~~-~v~~v~~spdg~~Lat~~~d~~~I~lW~  405 (685)
                      -.  +..++..+..+. ..+++.|....+++++++.|. .++++.
T Consensus       461 k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~-~l~~~a  504 (506)
T KOG0289|consen  461 KKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDA-ILRLYA  504 (506)
T ss_pred             cccccceeeehhhhcccccceeeecccceEEeeccchh-heEEee
Confidence            33  556777777666 599999999999999999986 677764

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=1.3e-25  Score=236.03  Aligned_cols=223  Identities=14%  Similarity=0.217  Sum_probs=174.5

Q ss_pred             CCCcEEEEEEcc-CCCCEEEEEeCCCcEEEEeCCCCe-------eeEEeecccccCeeEEEEeCCC-cEEEEecCCCcEE
Q 005656            1 MRGAVTALAFSS-DGQPLLASGASSGVISIWNLEKRR-------LQSVIREAHDNAIISLHFFANE-PVLMSASADNSIK   71 (685)
Q Consensus         1 h~~~V~~l~fsp-dg~~~latg~~dg~I~vwd~~~~~-------~~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~D~~v~   71 (685)
                      |+++|++++|+| ++. +||+|+.||+|++||+.++.       .+..+. +|...|.+++|+|++ ++|++++.|++|+
T Consensus        74 H~~~V~~v~fsP~d~~-~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~-gH~~~V~~l~f~P~~~~iLaSgs~DgtVr  151 (493)
T PTZ00421         74 QEGPIIDVAFNPFDPQ-KLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQ-GHTKKVGIVSFHPSAMNVLASAGADMVVN  151 (493)
T ss_pred             CCCCEEEEEEcCCCCC-EEEEEeCCCEEEEEecCCCccccccCcceEEec-CCCCcEEEEEeCcCCCCEEEEEeCCCEEE
Confidence            789999999999 777 99999999999999997652       455666 899999999999985 6999999999999


Q ss_pred             EEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccccccccc
Q 005656           72 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL  151 (685)
Q Consensus        72 iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (685)
                      +||+..+    ..+..+.+|...|.+++|+|+|.+|++++.||+|++||+++++....+.                    
T Consensus       152 IWDl~tg----~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~--------------------  207 (493)
T PTZ00421        152 VWDVERG----KAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE--------------------  207 (493)
T ss_pred             EEECCCC----eEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEe--------------------
Confidence            9999876    5667778999999999999999999999999999999998876554432                    


Q ss_pred             CceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCC-CeEEEEEccCCCEEEEEe----cCCcE
Q 005656          152 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT-AVKACTISACGNFAVLGT----AGGWI  226 (685)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~~g~----~dg~i  226 (685)
                                                                      .|.. ....+.|.+++..+++++    .++.|
T Consensus       208 ------------------------------------------------~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~V  239 (493)
T PTZ00421        208 ------------------------------------------------AHASAKSQRCLWAKRKDLIITLGCSKSQQRQI  239 (493)
T ss_pred             ------------------------------------------------cCCCCcceEEEEcCCCCeEEEEecCCCCCCeE
Confidence                                                            2222 234567788777776543    47899


Q ss_pred             EEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCceEEEeecC--CceeEEEEee
Q 005656          227 ERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWEVG--CSLVKIVYHR  303 (685)
Q Consensus       227 ~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~--~~i~~~~~~~  303 (685)
                      ++||+++........      ...+...+....|++++.++++++ .||.|++||+.++.+.......  .++..++|.|
T Consensus       240 klWDlr~~~~p~~~~------~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~p  313 (493)
T PTZ00421        240 MLWDTRKMASPYSTV------DLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMP  313 (493)
T ss_pred             EEEeCCCCCCceeEe------ccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecc
Confidence            999998754322211      012334566778999999998887 5999999999988766554332  3455555555

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.95  E-value=1.5e-25  Score=217.33  Aligned_cols=318  Identities=17%  Similarity=0.241  Sum_probs=240.3

Q ss_pred             CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC--
Q 005656            3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG--   80 (685)
Q Consensus         3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~--   80 (685)
                      .-|.|++|.++|+  ++||.++|.|.||+..+.+..+... +|.+.|.+++...+|.+| ||+.|..|..||-+....  
T Consensus       247 k~Vl~v~F~engd--viTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~  322 (626)
T KOG2106|consen  247 KFVLCVTFLENGD--VITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRE  322 (626)
T ss_pred             eEEEEEEEcCCCC--EEeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCccEe-ecCccceEEecccccccccc
Confidence            4589999999998  8899999999999999988888888 999999999999999655 599999999998322110  


Q ss_pred             --------CCc--------------------------eeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCce
Q 005656           81 --------DPR--------------------------LLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ  126 (685)
Q Consensus        81 --------~~~--------------------------~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~  126 (685)
                              ..+                          .-....+|....+.++.+|+..++++++.|+.+++|+  ..+.
T Consensus       323 ~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~  400 (626)
T KOG2106|consen  323 TELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKL  400 (626)
T ss_pred             ccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCce
Confidence                    000                          0011135566666666666666677777777777776  2211


Q ss_pred             eeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeE
Q 005656          127 SRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVK  206 (685)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~  206 (685)
                      ....                                                                     ....++.
T Consensus       401 ~wt~---------------------------------------------------------------------~~~d~~~  411 (626)
T KOG2106|consen  401 EWTK---------------------------------------------------------------------IIEDPAE  411 (626)
T ss_pred             eEEE---------------------------------------------------------------------EecCcee
Confidence            1110                                                                     2256789


Q ss_pred             EEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCce
Q 005656          207 ACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDL  286 (685)
Q Consensus       207 ~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~  286 (685)
                      |+.|+|.| .+++|+..|...+.|..+...+..-         ..+.+++++.|+|+|.+|+.|+.|+.|++|.+.....
T Consensus       412 ~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~---------~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~  481 (626)
T KOG2106|consen  412 CADFHPSG-VVAVGTATGRWFVLDTETQDLVTIH---------TDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGR  481 (626)
T ss_pred             EeeccCcc-eEEEeeccceEEEEecccceeEEEE---------ecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCc
Confidence            99999999 9999999999999999985554432         2378999999999999999999999999999875432


Q ss_pred             -EEEee--cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEE--------------EE----ecCCCCeEEEEEcC
Q 005656          287 -KSRWE--VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR--------------KF----EGHTDRITDFCFSE  345 (685)
Q Consensus       287 -~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~--------------~~----~~h~~~I~~l~~sp  345 (685)
                       .....  ..++|+.+.|++|++++.+.+.|-.|-.|....-+.+.              -|    ..|...|+.++-+.
T Consensus       482 ~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~  561 (626)
T KOG2106|consen  482 KYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSH  561 (626)
T ss_pred             EEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhh
Confidence             22221  23899999999999999999999999999543221111              11    13556678888888


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCcee---eEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656          346 DGKWLLSSGMDGSLRIWDVILARQI---DAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       346 dg~~l~s~s~Dg~I~iwd~~~~~~i---~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~~  406 (685)
                      +.+.+|+|...|.|++|..+-.+..   ..+..|+. |++++|.-+...|++.+.|- .|..|..
T Consensus       562 ~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~-Si~qW~l  625 (626)
T KOG2106|consen  562 CEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDT-SIMQWRL  625 (626)
T ss_pred             hhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCc-eEEEEEe
Confidence            9999999999999999998754443   33344555 99999999999999988775 9999974

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=9.6e-26  Score=227.05  Aligned_cols=280  Identities=18%  Similarity=0.245  Sum_probs=231.0

Q ss_pred             eeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeE-EEEec-CCCEEEEEeCC
Q 005656           36 RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLC-IRFYA-NGRHILSAGQD  113 (685)
Q Consensus        36 ~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~-i~~~~-~~~~l~s~s~d  113 (685)
                      ++.+.+. +|...|..+++.++. +++++|.||++++|+-...  .......+.+|.+-|.. ++|.+ ++..+++|+.|
T Consensus         5 ~ls~~l~-gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~--~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D   80 (745)
T KOG0301|consen    5 KLSHELE-GHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGK--QYLETHAFEGPKGFIANSICYAESDKGRLVVGGMD   80 (745)
T ss_pred             eeEEEec-cCccchheeEecCCe-EEeecCCCCceeeeeccCc--ccccceecccCcceeeccceeccccCcceEeeccc
Confidence            4556676 999999999977654 8999999999999965333  22333456677777776 78775 44569999999


Q ss_pred             CceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCce
Q 005656          114 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH  193 (685)
Q Consensus       114 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  193 (685)
                      +++.+|...+......+.                                                              
T Consensus        81 ~~i~v~~~~~~~P~~~Lk--------------------------------------------------------------   98 (745)
T KOG0301|consen   81 TTIIVFKLSQAEPLYTLK--------------------------------------------------------------   98 (745)
T ss_pred             ceEEEEecCCCCchhhhh--------------------------------------------------------------
Confidence            999999987766544443                                                              


Q ss_pred             eecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC
Q 005656          194 ILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH  273 (685)
Q Consensus       194 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d  273 (685)
                            +|...|++++...++. +++|+-|.++++|-.....  ...        .+|+..|+.++.-|.+ .++|||.|
T Consensus        99 ------gH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~--~~l--------~gH~asVWAv~~l~e~-~~vTgsaD  160 (745)
T KOG0301|consen   99 ------GHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELV--YSL--------QGHTASVWAVASLPEN-TYVTGSAD  160 (745)
T ss_pred             ------ccccceeeeecCCcCc-eEecccccceEEecchhhh--ccc--------CCcchheeeeeecCCC-cEEeccCc
Confidence                  8899999999988888 9999999999999764432  222        2999999999999988 79999999


Q ss_pred             CeEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEE
Q 005656          274 GDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLS  352 (685)
Q Consensus       274 g~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s  352 (685)
                      .+|++|.-  ++.++++..| ..|..+++-+++ .+++++.||.|+.|++ +|+++.+..||++-|.+++..+++..+++
T Consensus       161 KtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs  236 (745)
T KOG0301|consen  161 KTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVS  236 (745)
T ss_pred             ceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEE
Confidence            99999985  6777777766 778888888765 4678899999999999 78999999999999999998888899999


Q ss_pred             EeCCCcEEEEEcCCCceeeEEeecc-ceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          353 SGMDGSLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       353 ~s~Dg~I~iwd~~~~~~i~~~~~~~-~v~~v~~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                      +++|++++||+..  ++.+.+.++. .|+++.+-++|+ +++|+.|| .||||+..
T Consensus       237 ~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG-~VrVfT~~  288 (745)
T KOG0301|consen  237 TGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDG-RVRVFTVD  288 (745)
T ss_pred             ecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCc-eEEEEEec
Confidence            9999999999976  8899999888 499999999988 55666687 99999855

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=2.2e-26  Score=243.90  Aligned_cols=248  Identities=19%  Similarity=0.273  Sum_probs=205.4

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCC------------------CeeeEEeecccccCeeEEEEeCCCcEEE
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEK------------------RRLQSVIREAHDNAIISLHFFANEPVLM   62 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~------------------~~~~~~~~~~h~~~V~~l~~sp~~~~l~   62 (685)
                      |.+.|+|+.|+|||+ +||+|+.|+.|.||....                  .+....+. +|...|..++|+|++.+|+
T Consensus        68 h~~sv~CVR~S~dG~-~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~-~H~~DV~Dv~Wsp~~~~lv  145 (942)
T KOG0973|consen   68 HDGSVNCVRFSPDGS-YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILR-GHDSDVLDVNWSPDDSLLV  145 (942)
T ss_pred             ccCceeEEEECCCCC-eEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEe-cCCCccceeccCCCccEEE
Confidence            889999999999999 999999999999998772                  13566777 9999999999999999999


Q ss_pred             EecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhc
Q 005656           63 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKL  142 (685)
Q Consensus        63 s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  142 (685)
                      ++|.|++|.+|+..+.    ..+..+.+|...|..+.|.|-|+||++-+.|++|++|++.+....+.+......      
T Consensus       146 S~s~DnsViiwn~~tF----~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~------  215 (942)
T KOG0973|consen  146 SVSLDNSVIIWNAKTF----ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEE------  215 (942)
T ss_pred             EecccceEEEEccccc----eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhh------
Confidence            9999999999987776    778888999999999999999999999999999999998766555554321100      


Q ss_pred             cccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec
Q 005656          143 KMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA  222 (685)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~  222 (685)
                                                                              ......+..+.|||||.+|++...
T Consensus       216 --------------------------------------------------------~~~~T~f~RlSWSPDG~~las~nA  239 (942)
T KOG0973|consen  216 --------------------------------------------------------SPLTTFFLRLSWSPDGHHLASPNA  239 (942)
T ss_pred             --------------------------------------------------------CCCcceeeecccCCCcCeecchhh
Confidence                                                                    033456889999999999998643


Q ss_pred             ----CCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCC-----CC------------EEEEEECCCeEEEEEC
Q 005656          223 ----GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-----NT------------LMISAGYHGDIKVWDF  281 (685)
Q Consensus       223 ----dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-----~~------------~l~s~s~dg~i~iwd~  281 (685)
                          ...+.+.+-.+-..-..+.        +|.+++.++.|+|.     ..            .+++|+.|++|.||..
T Consensus       240 ~n~~~~~~~IieR~tWk~~~~Lv--------GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T  311 (942)
T KOG0973|consen  240 VNGGKSTIAIIERGTWKVDKDLV--------GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNT  311 (942)
T ss_pred             ccCCcceeEEEecCCceeeeeee--------cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEec
Confidence                2356777665554444443        99999999999881     11            6788999999999999


Q ss_pred             CCCceEEEeec--CCceeEEEEeecCCEEEEEeCCCeEEEEEcCC
Q 005656          282 KGRDLKSRWEV--GCSLVKIVYHRVNGLLATVADDLVIRLFDVVA  324 (685)
Q Consensus       282 ~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~  324 (685)
                      ...+++.....  ...|..++|+|||-.|++++.||+|.++..+.
T Consensus       312 ~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee  356 (942)
T KOG0973|consen  312 ALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE  356 (942)
T ss_pred             CCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence            87777655443  47899999999999999999999999998764

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.95  E-value=3.3e-26  Score=214.82  Aligned_cols=245  Identities=18%  Similarity=0.295  Sum_probs=201.3

Q ss_pred             CCCcEEEEEEccCCC--CEEEEEeCCCcEEEEeCCCCee----eEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEE
Q 005656            1 MRGAVTALAFSSDGQ--PLLASGASSGVISIWNLEKRRL----QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI   74 (685)
Q Consensus         1 h~~~V~~l~fspdg~--~~latg~~dg~I~vwd~~~~~~----~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd   74 (685)
                      |.++|.+++|---..  ..+++++.|.++++|-++.++.    +...+ ||..+|-++...++|..+++||.|++++||+
T Consensus       143 ht~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~-GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs  221 (423)
T KOG0313|consen  143 HTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCR-GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWS  221 (423)
T ss_pred             CCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhc-ccccceeEEEecCCCCeEEeecccceeeecc
Confidence            789999888754332  2699999999999999887654    23333 9999999999999999999999999999998


Q ss_pred             ecCC---------------------CCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechh
Q 005656           75 FDTT---------------------DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQR  133 (685)
Q Consensus        75 ~~~~---------------------~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~  133 (685)
                      ....                     .+...++..+.||..+|.++.|++ ...+++++.|.+|+.||+.++.....+   
T Consensus       222 ~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~---  297 (423)
T KOG0313|consen  222 VETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTL---  297 (423)
T ss_pred             cCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeee---
Confidence            3221                     112345677889999999999998 568999999999999999998876655   


Q ss_pred             hHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccC
Q 005656          134 HVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC  213 (685)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  213 (685)
                                                                                        ..+..+.++.++|.
T Consensus       298 ------------------------------------------------------------------~~~ksl~~i~~~~~  311 (423)
T KOG0313|consen  298 ------------------------------------------------------------------TTNKSLNCISYSPL  311 (423)
T ss_pred             ------------------------------------------------------------------ecCcceeEeecccc
Confidence                                                                              33567899999999


Q ss_pred             CCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCC-EEEEEECCCeEEEEECCCCc-eEEEee
Q 005656          214 GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT-LMISAGYHGDIKVWDFKGRD-LKSRWE  291 (685)
Q Consensus       214 g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~~-~~~~~~  291 (685)
                      .+.+++|+.|..+++||.+++.-.....     ...+|++.|.++.|+|.+. .|++++.|+++++||+++.+ ++..+.
T Consensus       312 ~~Ll~~gssdr~irl~DPR~~~gs~v~~-----s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~  386 (423)
T KOG0313|consen  312 SKLLASGSSDRHIRLWDPRTGDGSVVSQ-----SLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA  386 (423)
T ss_pred             cceeeecCCCCceeecCCCCCCCceeEE-----eeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeec
Confidence            9999999999999999999874322211     2349999999999999874 68899999999999999766 666665


Q ss_pred             c-CCceeEEEEeecCCEEEEEeCCCeEEEEEc
Q 005656          292 V-GCSLVKIVYHRVNGLLATVADDLVIRLFDV  322 (685)
Q Consensus       292 ~-~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~  322 (685)
                      . ...|.++.|. ++.++++|+.|.+|+|+.-
T Consensus       387 ~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  387 GHNDKVLSVDWN-EGGLIVSGGADNKLRIFKG  417 (423)
T ss_pred             cCCceEEEEecc-CCceEEeccCcceEEEecc
Confidence            4 4889999997 4679999999999999864

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=2.8e-25  Score=203.57  Aligned_cols=269  Identities=15%  Similarity=0.211  Sum_probs=221.6

Q ss_pred             ecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEe
Q 005656           42 REAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV  121 (685)
Q Consensus        42 ~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~  121 (685)
                      .......|.++.|+|.+..|+.++.||++++|++....     ++..-.|..|+.+++|.++ ..+++|+.||.|+.+|+
T Consensus         9 ~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~-----l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dl   82 (323)
T KOG1036|consen    9 ENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS-----LKLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDL   82 (323)
T ss_pred             CCCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchh-----hhhheecCCceeeeeccCC-ceEEEeccCceEEEEEe
Confidence            33457889999999999999999999999999998762     2223368999999999874 57999999999999999


Q ss_pred             ecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCC
Q 005656          122 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN  201 (685)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  201 (685)
                      .++......                                                                     .|
T Consensus        83 n~~~~~~ig---------------------------------------------------------------------th   93 (323)
T KOG1036|consen   83 NTGNEDQIG---------------------------------------------------------------------TH   93 (323)
T ss_pred             cCCcceeec---------------------------------------------------------------------cC
Confidence            877543322                                                                     67


Q ss_pred             CCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005656          202 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF  281 (685)
Q Consensus       202 ~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~  281 (685)
                      ...++|+..++-.+.+++|+-|+.|++||.+.......+         .....|.++...  +..|++|+.|..+.+||+
T Consensus        94 ~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~---------d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDL  162 (323)
T KOG1036|consen   94 DEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTF---------DQGKKVYCMDVS--GNRLVVGTSDRKVLIYDL  162 (323)
T ss_pred             CCceEEEEeeccCCeEEEcccCccEEEEecccccccccc---------ccCceEEEEecc--CCEEEEeecCceEEEEEc
Confidence            889999999999999999999999999999985555544         334478888765  668999999999999999


Q ss_pred             CCCceEEE---eecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCC----eeEEEEecCCC---------CeEEEEEcC
Q 005656          282 KGRDLKSR---WEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL----RMVRKFEGHTD---------RITDFCFSE  345 (685)
Q Consensus       282 ~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~----~~~~~~~~h~~---------~I~~l~~sp  345 (685)
                      ++.....+   -.....+.++++.|++.=+++++-||.|.+=.++..    +.-..|+.|..         +|++|+|+|
T Consensus       163 Rn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp  242 (323)
T KOG1036|consen  163 RNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP  242 (323)
T ss_pred             ccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc
Confidence            98654442   233478999999998888999999999988766655    33455666653         699999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeeEEeec-cceEEEEEcCCCCeEEEEEe
Q 005656          346 DGKWLLSSGMDGSLRIWDVILARQIDAIHVD-VSITALSLSPNMDVLATAHV  396 (685)
Q Consensus       346 dg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~-~~v~~v~~spdg~~Lat~~~  396 (685)
                      -...||||+.||.|.+||+.+.+.+..+..- ..|.+++|+.||..||+++.
T Consensus       243 ~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  243 IHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             ccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence            9889999999999999999999888888654 55999999999999999974

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=2e-25  Score=224.71  Aligned_cols=273  Identities=18%  Similarity=0.276  Sum_probs=226.3

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeE--EeecccccCeeE-EEEeC-CCcEEEEecCCCcEEEEEec
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQS--VIREAHDNAIIS-LHFFA-NEPVLMSASADNSIKMWIFD   76 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~--~~~~~h~~~V~~-l~~sp-~~~~l~s~s~D~~v~iWd~~   76 (685)
                      |+..|..+++.+..  .+++++.||++++|+-..++...  .+. +|.+-|.+ +++.+ ++-.+++|+.|.+|.+|...
T Consensus        13 H~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~~~~~~-~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~   89 (745)
T KOG0301|consen   13 HKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLETHAFE-GPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLS   89 (745)
T ss_pred             CccchheeEecCCe--EEeecCCCCceeeeeccCcccccceecc-cCcceeeccceeccccCcceEeecccceEEEEecC
Confidence            77788888887765  68899999999999987666544  344 78888877 88876 34469999999999999887


Q ss_pred             CCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceee
Q 005656           77 TTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA  156 (685)
Q Consensus        77 ~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (685)
                      ..    .++.++.||...|.|++...++. ++|||.|.++++|....-.  .                            
T Consensus        90 ~~----~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~--~----------------------------  134 (745)
T KOG0301|consen   90 QA----EPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELV--Y----------------------------  134 (745)
T ss_pred             CC----CchhhhhccccceeeeecCCcCc-eEecccccceEEecchhhh--c----------------------------
Confidence            76    67888899999999999887776 9999999999999763221  1                            


Q ss_pred             eecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcc
Q 005656          157 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS  236 (685)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~  236 (685)
                                                              ...+|...|.++..-|.+ .+++|+.|..|++|.-  +..
T Consensus       135 ----------------------------------------~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~  171 (745)
T KOG0301|consen  135 ----------------------------------------SLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTL  171 (745)
T ss_pred             ----------------------------------------ccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cch
Confidence                                                    122889999999999988 8999999999999976  566


Q ss_pred             ccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCe
Q 005656          237 RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLV  316 (685)
Q Consensus       237 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  316 (685)
                      ..++.        +|...|+++++-+++. +++|+.||.|++|++....+.....+..-+.++....++..+++++.|++
T Consensus       172 l~tf~--------gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrt  242 (745)
T KOG0301|consen  172 LKTFS--------GHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRT  242 (745)
T ss_pred             hhhhc--------cchhheeeeEEecCCC-eEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCce
Confidence            66664        9999999999998754 88999999999999965555555556688999998888999999999999


Q ss_pred             EEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005656          317 IRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL  366 (685)
Q Consensus       317 I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~  366 (685)
                      ++||+..  ++++.+.-....|+++.+-++|+ +++|+.||.||||....
T Consensus       243 lriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  243 LRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             EEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence            9999976  77788875555899999998887 67788899999998763

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=1.6e-24  Score=228.59  Aligned_cols=207  Identities=12%  Similarity=0.204  Sum_probs=167.3

Q ss_pred             CCCCCeEEEEEccC-CCEEEEEecCCcEEEEECCCCcc-ccccccccccccCCCCcCEEEEEEcCCCCE-EEEEECCCeE
Q 005656          200 ENPTAVKACTISAC-GNFAVLGTAGGWIERFNLQSGIS-RGSYLDMSERSNYAHNGEVVGVACDSTNTL-MISAGYHGDI  276 (685)
Q Consensus       200 ~~~~~v~~~~~s~~-g~~l~~g~~dg~i~~~d~~~~~~-~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-l~s~s~dg~i  276 (685)
                      +|...|.+++|+|+ ++++++|+.||.|++||+.++.. ..... .+.....+|...|.+++|+|++.. +++++.|++|
T Consensus        72 gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~-~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtI  150 (568)
T PTZ00420         72 GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIK-DPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFV  150 (568)
T ss_pred             CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccc-cceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeE
Confidence            78899999999997 79999999999999999986532 11100 011122389999999999999875 5789999999


Q ss_pred             EEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEE-----EEcCCCCEEE
Q 005656          277 KVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDF-----CFSEDGKWLL  351 (685)
Q Consensus       277 ~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l-----~~spdg~~l~  351 (685)
                      ++||+++++....+.++..|.+++|+|+|.+|++++.|+.|+|||+++++.+.++.+|.+.+...     .|++++.+|+
T Consensus       151 rIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~Il  230 (568)
T PTZ00420        151 NIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYIL  230 (568)
T ss_pred             EEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEE
Confidence            99999999888777777889999999999999999999999999999999999999998865433     3568999999


Q ss_pred             EEeCCC----cEEEEEcCC-CceeeEEeeccc---eEEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656          352 SSGMDG----SLRIWDVIL-ARQIDAIHVDVS---ITALSLSPNMDVLATAHVDQNGVYLWVNRC  408 (685)
Q Consensus       352 s~s~Dg----~I~iwd~~~-~~~i~~~~~~~~---v~~v~~spdg~~Lat~~~d~~~I~lW~~~~  408 (685)
                      +++.|+    +|+|||+.. +.++..+..+..   +......++|.++++|..|+ .|++|+...
T Consensus       231 TtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~-tIr~~e~~~  294 (568)
T PTZ00420        231 STGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDG-NCRYYQHSL  294 (568)
T ss_pred             EEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCC-eEEEEEccC
Confidence            988774    799999984 667776665544   33344455688888988887 999998754

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.94  E-value=3.3e-24  Score=217.47  Aligned_cols=268  Identities=13%  Similarity=0.137  Sum_probs=205.1

Q ss_pred             CcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEE-EEEeCCCceEEEEeecCceeeEechhhHH
Q 005656           58 EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHI-LSAGQDRAFRLFSVIQDQQSRELSQRHVA  136 (685)
Q Consensus        58 ~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~  136 (685)
                      +..+++++.|+.+++||..++    +.+..+.++. .+.+++|+|+++.+ ++++.++.|++||+.+++....+.     
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~----~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-----   70 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATL----EVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP-----   70 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCC----ceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc-----
Confidence            357889999999999998766    4555555554 46789999999876 566778999999987765433321     


Q ss_pred             HHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCE
Q 005656          137 KRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNF  216 (685)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  216 (685)
                                                                                     . ...+..++++|+++.
T Consensus        71 ---------------------------------------------------------------~-~~~~~~~~~~~~g~~   86 (300)
T TIGR03866        71 ---------------------------------------------------------------S-GPDPELFALHPNGKI   86 (300)
T ss_pred             ---------------------------------------------------------------C-CCCccEEEECCCCCE
Confidence                                                                           1 122456889999998


Q ss_pred             EEEE-ecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCC-eEEEEECCCCceEEEeecCC
Q 005656          217 AVLG-TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG-DIKVWDFKGRDLKSRWEVGC  294 (685)
Q Consensus       217 l~~g-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~  294 (685)
                      ++++ ..++.+.+||+.++.....+         .+...+.+++|+|++.++++++.++ .+.+||..+++.........
T Consensus        87 l~~~~~~~~~l~~~d~~~~~~~~~~---------~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~  157 (300)
T TIGR03866        87 LYIANEDDNLVTVIDIETRKVLAEI---------PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQ  157 (300)
T ss_pred             EEEEcCCCCeEEEEECCCCeEEeEe---------eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCC
Confidence            8665 45899999999987665544         2233467899999999999888765 57788998887776665556


Q ss_pred             ceeEEEEeecCCEEEEEe-CCCeEEEEEcCCCeeEEEEecCC-----C--CeEEEEEcCCCCEEEE-EeCCCcEEEEEcC
Q 005656          295 SLVKIVYHRVNGLLATVA-DDLVIRLFDVVALRMVRKFEGHT-----D--RITDFCFSEDGKWLLS-SGMDGSLRIWDVI  365 (685)
Q Consensus       295 ~i~~~~~~~~~~~l~~~~-~dg~I~i~d~~~~~~~~~~~~h~-----~--~I~~l~~spdg~~l~s-~s~Dg~I~iwd~~  365 (685)
                      ....++|+|+++++++++ .++.|++||+.+++.+..+..+.     .  ....++|+|++++++. .+.++.|.+||+.
T Consensus       158 ~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~  237 (300)
T TIGR03866       158 RPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK  237 (300)
T ss_pred             CccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECC
Confidence            678899999999876554 58999999999998877765332     1  2356889999998654 4556789999999


Q ss_pred             CCceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656          366 LARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRC  408 (685)
Q Consensus       366 ~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~  408 (685)
                      +++.+..+.....+.+++|+|+|++|+++...++.|.+|+...
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~  280 (300)
T TIGR03866       238 TYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA  280 (300)
T ss_pred             CCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence            9988877766667999999999999998765445999998654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.94  E-value=8e-26  Score=217.72  Aligned_cols=248  Identities=20%  Similarity=0.350  Sum_probs=200.9

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe----------eeEEeecccccCeeEEEEeCCCc-EEEEecCCCc
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR----------LQSVIREAHDNAIISLHFFANEP-VLMSASADNS   69 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~----------~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~D~~   69 (685)
                      |.|.|+.+..-|....++|+++..+.|.|||..+-.          +-.++. +|.+.=++++|++... .|++++.|++
T Consensus       123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~-gH~~eg~glsWn~~~~g~Lls~~~d~~  201 (422)
T KOG0264|consen  123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLK-GHEKEGYGLSWNRQQEGTLLSGSDDHT  201 (422)
T ss_pred             CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEE-eecccccccccccccceeEeeccCCCc
Confidence            778899999999988899999999999999986522          122566 8999889999999655 8999999999


Q ss_pred             EEEEEecCCCCC---CceeEecccCCCCCeEEEEecC-CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccc
Q 005656           70 IKMWIFDTTDGD---PRLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK  145 (685)
Q Consensus        70 v~iWd~~~~~~~---~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  145 (685)
                      |++||+......   ......+.+|...|..++|++- ...+.+++.|+.+.|||++++. .+..               
T Consensus       202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~-~~~~---------------  265 (422)
T KOG0264|consen  202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT-SKPS---------------  265 (422)
T ss_pred             EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC-CCCc---------------
Confidence            999999876542   3455677899999999999995 5678899999999999997531 0000               


Q ss_pred             ccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCc
Q 005656          146 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGW  225 (685)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~  225 (685)
                                                                                                      
T Consensus       266 --------------------------------------------------------------------------------  265 (422)
T KOG0264|consen  266 --------------------------------------------------------------------------------  265 (422)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEEECCCCccccccccccccccCCCCcCEEEEEEcCCC-CEEEEEECCCeEEEEECCCCc-eEEEeec-CCceeEEEEe
Q 005656          226 IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRD-LKSRWEV-GCSLVKIVYH  302 (685)
Q Consensus       226 i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~-~~~~~~~-~~~i~~~~~~  302 (685)
                                  .        ...+|.+.|.|++|+|-+ ..|||||.|++|++||+++.. .+.++.. ...|.++.|+
T Consensus       266 ------------~--------~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WS  325 (422)
T KOG0264|consen  266 ------------H--------SVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWS  325 (422)
T ss_pred             ------------c--------cccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeC
Confidence                        0        112899999999999965 578899999999999999643 4445544 4899999999


Q ss_pred             ecCC-EEEEEeCCCeEEEEEcCCC--------------eeEEEEecCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEEcC
Q 005656          303 RVNG-LLATVADDLVIRLFDVVAL--------------RMVRKFEGHTDRITDFCFSEDGKWL-LSSGMDGSLRIWDVI  365 (685)
Q Consensus       303 ~~~~-~l~~~~~dg~I~i~d~~~~--------------~~~~~~~~h~~~I~~l~~spdg~~l-~s~s~Dg~I~iwd~~  365 (685)
                      |... .||+++.|+.+.|||+..-              +++....||...|+++.|+|+..|+ +|++.|+.+.||...
T Consensus       326 Ph~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  326 PHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             CCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            9865 8999999999999998642              3356667999999999999988764 578899999999975

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1e-23  Score=212.20  Aligned_cols=372  Identities=15%  Similarity=0.189  Sum_probs=271.0

Q ss_pred             CCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCC
Q 005656            2 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD   81 (685)
Q Consensus         2 ~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~   81 (685)
                      .+.|-+++|++.|+  |.+.+.+|.|.-||+.+++....+. ...+.|.+++.+|.+..++.|+.||.+...+.  +.+.
T Consensus        69 drsIE~L~W~e~~R--LFS~g~sg~i~EwDl~~lk~~~~~d-~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~--~p~~  143 (691)
T KOG2048|consen   69 DRSIESLAWAEGGR--LFSSGLSGSITEWDLHTLKQKYNID-SNGGAIWSIAINPENTILAIGCDDGVLYDFSI--GPDK  143 (691)
T ss_pred             CCceeeEEEccCCe--EEeecCCceEEEEecccCceeEEec-CCCcceeEEEeCCccceEEeecCCceEEEEec--CCce
Confidence            35789999997776  6777889999999999999999998 88999999999999999999999995555544  4333


Q ss_pred             CceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccccccccc-Cceeeeecc
Q 005656           82 PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL-KPVIAFDCA  160 (685)
Q Consensus        82 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  160 (685)
                      ....+.+....+.|.+++|+|++..+++|+.||.|++||...+.........            .+.+.. .+....+..
T Consensus       144 I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~------------~d~l~k~~~~iVWSv~  211 (691)
T KOG2048|consen  144 ITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQ------------LDRLSKREPTIVWSVL  211 (691)
T ss_pred             EEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeec------------ccccccCCceEEEEEE
Confidence            3444556666789999999999999999999999999999988876633211            111111 223333332


Q ss_pred             cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656          161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  240 (685)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~  240 (685)
                      .+    -+..+.++...|.+..||...+.+.+..    ..+...|.+++..++++.+++++.|+.|..|...++......
T Consensus       212 ~L----rd~tI~sgDS~G~V~FWd~~~gTLiqS~----~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~  283 (691)
T KOG2048|consen  212 FL----RDSTIASGDSAGTVTFWDSIFGTLIQSH----SCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVI  283 (691)
T ss_pred             Ee----ecCcEEEecCCceEEEEcccCcchhhhh----hhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceee
Confidence            22    2456888999999999999887665433    367889999999999999999999999999988776542111


Q ss_pred             ccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCC-----------------------ceE----------
Q 005656          241 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-----------------------DLK----------  287 (685)
Q Consensus       241 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~-----------------------~~~----------  287 (685)
                          ......|...|.++++.++  .+++|+.|.++.+-.....                       ++.          
T Consensus       284 ----~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~l  357 (691)
T KOG2048|consen  284 ----NSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDL  357 (691)
T ss_pred             ----eccccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccc
Confidence                0122378888999988766  7888888887766533220                       000          


Q ss_pred             -------------------EEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCC------------------------
Q 005656          288 -------------------SRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA------------------------  324 (685)
Q Consensus       288 -------------------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~------------------------  324 (685)
                                         .....+..|.+.+.+|+|++++.+.-. ..+||.+..                        
T Consensus       358 wrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~f  436 (691)
T KOG2048|consen  358 WRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVS-RTKIYRLQPDPNVKVINVDDVPLALLDASAISF  436 (691)
T ss_pred             eeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeecc-ceEEEEeccCcceeEEEeccchhhhccceeeEE
Confidence                               011123568899999999999988721 222222211                        


Q ss_pred             ------------------------C--eeEEEEe--cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEE-ee
Q 005656          325 ------------------------L--RMVRKFE--GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI-HV  375 (685)
Q Consensus       325 ------------------------~--~~~~~~~--~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~-~~  375 (685)
                                              .  +.+..+.  +....|+.+..||||+|||+.+.+|.|.+|++.+++..... ..
T Consensus       437 tid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rl  516 (691)
T KOG2048|consen  437 TIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRL  516 (691)
T ss_pred             EecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhcc
Confidence                                    0  0000000  12346899999999999999999999999999988765555 45


Q ss_pred             ccceEEEEEcC-CCCeEEEEEeCCCeEEEEEc
Q 005656          376 DVSITALSLSP-NMDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       376 ~~~v~~v~~sp-dg~~Lat~~~d~~~I~lW~~  406 (685)
                      ...|+.++|+| +...|+.++.++ .|+=|+.
T Consensus       517 n~~vTa~~~~~~~~~~lvvats~n-Qv~efdi  547 (691)
T KOG2048|consen  517 NIDVTAAAFSPFVRNRLVVATSNN-QVFEFDI  547 (691)
T ss_pred             CcceeeeeccccccCcEEEEecCC-eEEEEec
Confidence            66799999995 567888888785 8988875

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=3.8e-25  Score=202.85  Aligned_cols=312  Identities=15%  Similarity=0.218  Sum_probs=221.2

Q ss_pred             EEEEeCCCCee-----eEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC-CCceeEecccCCCCCeEEEE
Q 005656           27 ISIWNLEKRRL-----QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG-DPRLLRFRSGHSAPPLCIRF  100 (685)
Q Consensus        27 I~vwd~~~~~~-----~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~-~~~~~~~~~~h~~~v~~i~~  100 (685)
                      +.-|+.+....     ...++ +|.+.|++++|+.||++|+|++.|++|++|+++.... ..++++.. -.-+..+.+.|
T Consensus        63 ~~~~k~~q~~f~Hpl~~~~LK-gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n-ve~dhpT~V~F  140 (420)
T KOG2096|consen   63 NDQWKAKQPTFVHPLNVSVLK-GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN-VEYDHPTRVVF  140 (420)
T ss_pred             hhhhcccCCCcccchhhhhhh-ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc-ccCCCceEEEE
Confidence            45565554443     23455 9999999999999999999999999999999876432 12333322 12235788999


Q ss_pred             ecCCCE-EEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCce
Q 005656          101 YANGRH-ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQ  179 (685)
Q Consensus       101 ~~~~~~-l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (685)
                      .||-+- ++++-...++++|.+...+. ...+                                              ..
T Consensus       141 apDc~s~vv~~~~g~~l~vyk~~K~~d-G~~~----------------------------------------------~~  173 (420)
T KOG2096|consen  141 APDCKSVVVSVKRGNKLCVYKLVKKTD-GSGS----------------------------------------------HH  173 (420)
T ss_pred             CCCcceEEEEEccCCEEEEEEeeeccc-CCCC----------------------------------------------cc
Confidence            999654 44555566899998754332 0000                                              00


Q ss_pred             EEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEE
Q 005656          180 AYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVA  259 (685)
Q Consensus       180 ~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  259 (685)
                      ..-||         .+.....|...+..+-+-..+.++.+++.|..|.+|++. |+....+.        .....-+..+
T Consensus       174 ~v~~D---------~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~id--------tnq~~n~~aa  235 (420)
T KOG2096|consen  174 FVHID---------NLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSID--------TNQSSNYDAA  235 (420)
T ss_pred             ccccc---------ccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeec--------ccccccccee
Confidence            00011         000111455566777788889999999999999999999 77766654        3444556788


Q ss_pred             EcCCCCEEEEEECCCeEEEEECC---CCc-----eEEEee-cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCC------
Q 005656          260 CDSTNTLMISAGYHGDIKVWDFK---GRD-----LKSRWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA------  324 (685)
Q Consensus       260 ~~~~~~~l~s~s~dg~i~iwd~~---~~~-----~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~------  324 (685)
                      ++|+|+++++++..-.|++|..-   .|.     ....+. +.+.+..++|++++..+++.+.||+++|||++-      
T Consensus       236 vSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~q  315 (420)
T KOG2096|consen  236 VSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQ  315 (420)
T ss_pred             eCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCC
Confidence            99999999999999999999863   221     122333 348899999999999999999999999999863      


Q ss_pred             -CeeEEEE----ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEe--eccceEEEEEcCCCCeEEEEEeC
Q 005656          325 -LRMVRKF----EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH--VDVSITALSLSPNMDVLATAHVD  397 (685)
Q Consensus       325 -~~~~~~~----~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~--~~~~v~~v~~spdg~~Lat~~~d  397 (685)
                       .+.+++.    ....+....+..+|.|+.||.+. ...+++|..++|+....+.  +...|++++|+++|+++++++ |
T Consensus       316 Dpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-d  393 (420)
T KOG2096|consen  316 DPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-D  393 (420)
T ss_pred             CchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-c
Confidence             2223332    12233445899999999888765 4579999999998887775  344499999999999999998 4


Q ss_pred             CCeEEEEEcCC
Q 005656          398 QNGVYLWVNRC  408 (685)
Q Consensus       398 ~~~I~lW~~~~  408 (685)
                      . .+++..|-+
T Consensus       394 r-~vrv~~ntp  403 (420)
T KOG2096|consen  394 R-YVRVIRNTP  403 (420)
T ss_pred             e-eeeeecCCC
Confidence            3 788886543

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.94  E-value=6.5e-25  Score=220.95  Aligned_cols=377  Identities=18%  Similarity=0.220  Sum_probs=248.6

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCC--eeeEEee----cccccCeeEEEEeCCCcEEEEecCCCcEEEEE
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR--RLQSVIR----EAHDNAIISLHFFANEPVLMSASADNSIKMWI   74 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~--~~~~~~~----~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd   74 (685)
                      |.+.|.++.|+|.+. .|.+++.|.++.+|.-.+.  --+-..+    .|..++..+..|+|+++.+++-+.-|..++|.
T Consensus       266 HeDWV~sv~W~p~~~-~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWk  344 (764)
T KOG1063|consen  266 HEDWVYSVWWHPEGL-DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWK  344 (764)
T ss_pred             cccceEEEEEccchh-hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEe
Confidence            889999999999997 6788999999999976654  2222222    14456789999999999999999999999997


Q ss_pred             ecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCce
Q 005656           75 FDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV  154 (685)
Q Consensus        75 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (685)
                       ..............||...|..++|.|.|.+|+++|.|.+-|+|---..+..                  -.+...|++
T Consensus       345 -t~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~------------------wHEiaRPQi  405 (764)
T KOG1063|consen  345 -TKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQE------------------WHEIARPQI  405 (764)
T ss_pred             -ccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccc------------------eeeeccccc
Confidence             2233344556677899999999999999999999999999999864311111                  011122222


Q ss_pred             eeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEE-----ccCCCEE-EEEecCCcEEE
Q 005656          155 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTI-----SACGNFA-VLGTAGGWIER  228 (685)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~-----s~~g~~l-~~g~~dg~i~~  228 (685)
                      -.++....+--..+..+..+.+...+++++....-..         .-..+...++     .|+|-.+ +.|-++.-+..
T Consensus       406 HGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~---------~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~  476 (764)
T KOG1063|consen  406 HGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVK---------SLMAICGKCFKGSDELPDGANVPALGLSNKAFFP  476 (764)
T ss_pred             ccccceeeehccCCceeeecccceeeeeecCcHHHHH---------HHHHHhCccccCchhcccccccccccccCCCCcc
Confidence            2222222111111223333444444444443221000         0011111111     1111111 11111111110


Q ss_pred             EECCCCcc----c--------ccccc-------------ccccccCCCCcCEEEEEEcCCCCEEEEEECC-----CeEEE
Q 005656          229 FNLQSGIS----R--------GSYLD-------------MSERSNYAHNGEVVGVACDSTNTLMISAGYH-----GDIKV  278 (685)
Q Consensus       229 ~d~~~~~~----~--------~~~~~-------------~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d-----g~i~i  278 (685)
                      =+..+|..    .        ..+..             +.....++|.-.|.+++.+|+++++++++..     ..|++
T Consensus       477 ~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~l  556 (764)
T KOG1063|consen  477 GETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRL  556 (764)
T ss_pred             cccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEE
Confidence            01111111    0        00000             0123456999999999999999999999754     35999


Q ss_pred             EECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCee----EEEEecCCCCeEEEEEcCCCCEEEEE
Q 005656          279 WDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM----VRKFEGHTDRITDFCFSEDGKWLLSS  353 (685)
Q Consensus       279 wd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~----~~~~~~h~~~I~~l~~spdg~~l~s~  353 (685)
                      |+..+......+..| -.|+.++|+|||++|++.+.|.++.+|.......    ....+.|+.-|.++.|+|++.+++|+
T Consensus       557 w~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTa  636 (764)
T KOG1063|consen  557 WNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATA  636 (764)
T ss_pred             EeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEe
Confidence            999987777766554 7899999999999999999999999998754321    23367899999999999999999999


Q ss_pred             eCCCcEEEEEcCCC--ceee---EEeeccceEEEEEcCC-----CCeEEEEEeCCCeEEEEEcC
Q 005656          354 GMDGSLRIWDVILA--RQID---AIHVDVSITALSLSPN-----MDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       354 s~Dg~I~iwd~~~~--~~i~---~~~~~~~v~~v~~spd-----g~~Lat~~~d~~~I~lW~~~  407 (685)
                      |.|.+|+||.....  +.+.   .+.+..+|++++|.|-     +..+++|-..| .|++|..+
T Consensus       637 SRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~G-eI~l~~~~  699 (764)
T KOG1063|consen  637 SRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKG-EIVLWRRK  699 (764)
T ss_pred             cCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEeccc-EEEEEecc
Confidence            99999999999877  4433   3456777999999872     23556666665 99999844

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=4.1e-24  Score=215.05  Aligned_cols=328  Identities=18%  Similarity=0.215  Sum_probs=251.1

Q ss_pred             CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCee-eEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCC
Q 005656            3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL-QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD   81 (685)
Q Consensus         3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~-~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~   81 (685)
                      .+|+|+||+.+.+ .||.+-.+|.|.||++..+-+ ...+..+-++.|.+++|++ +..|++.+.+|+|.-||+.+.   
T Consensus        26 s~I~slA~s~kS~-~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~l---  100 (691)
T KOG2048|consen   26 SEIVSLAYSHKSN-QLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTL---  100 (691)
T ss_pred             cceEEEEEeccCC-ceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccC---
Confidence            5799999999988 899999999999999987644 4455544567899999995 558888899999999999887   


Q ss_pred             CceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccc
Q 005656           82 PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE  161 (685)
Q Consensus        82 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (685)
                       +.........++|++++.+|.+..++.|+.||.+..++...+.......                              
T Consensus       101 -k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~------------------------------  149 (691)
T KOG2048|consen  101 -KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRS------------------------------  149 (691)
T ss_pred             -ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEee------------------------------
Confidence             5666667788999999999999999999999977777776554433221                              


Q ss_pred             ccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccc
Q 005656          162 IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYL  241 (685)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~  241 (685)
                                                          .....+.+.+++|+|++..++.|+.||.|++||..++.......
T Consensus       150 ------------------------------------l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~  193 (691)
T KOG2048|consen  150 ------------------------------------LMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIIT  193 (691)
T ss_pred             ------------------------------------cccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEee
Confidence                                                00335789999999999999999999999999999998766221


Q ss_pred             cccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEE
Q 005656          242 DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLF  320 (685)
Q Consensus       242 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~  320 (685)
                      ....+.......-|+++.+-.++ .|++|..-|+|++||...+.+++.+..+ +.|.+++..+++.++++++.|+.|.-|
T Consensus       194 ~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~  272 (691)
T KOG2048|consen  194 MQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQY  272 (691)
T ss_pred             ecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEE
Confidence            11111111244567888888655 5899999999999999999998887755 889999999999999999999999999


Q ss_pred             EcCCCee----EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC-------------------------------
Q 005656          321 DVVALRM----VRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI-------------------------------  365 (685)
Q Consensus       321 d~~~~~~----~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~-------------------------------  365 (685)
                      ...+.+.    ......|...|.+++..++  .+++|+.|.++.+-...                               
T Consensus       273 ~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w  350 (691)
T KOG2048|consen  273 SLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLW  350 (691)
T ss_pred             EecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEe
Confidence            8776532    2234568888999988776  67777777666554321                               


Q ss_pred             -----------CC------c--eeeEE--eeccceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          366 -----------LA------R--QIDAI--HVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       366 -----------~~------~--~i~~~--~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                                 +.      .  .+..+  +.+..|.+.+.||+|++++.+...  .++||.++
T Consensus       351 ~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~--~~~iy~L~  411 (691)
T KOG2048|consen  351 KAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVS--RTKIYRLQ  411 (691)
T ss_pred             ccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeecc--ceEEEEec
Confidence                       11      0  00111  123348999999999999999866  56777543

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=8.9e-25  Score=219.93  Aligned_cols=334  Identities=15%  Similarity=0.235  Sum_probs=245.5

Q ss_pred             EEEEEccCCCCEEEEEeCCCcEEEEeCCC----CeeeEEeecccccCeeEEEEeCC-----------CcEEEEecCCCcE
Q 005656            6 TALAFSSDGQPLLASGASSGVISIWNLEK----RRLQSVIREAHDNAIISLHFFAN-----------EPVLMSASADNSI   70 (685)
Q Consensus         6 ~~l~fspdg~~~latg~~dg~I~vwd~~~----~~~~~~~~~~h~~~V~~l~~sp~-----------~~~l~s~s~D~~v   70 (685)
                      -++.|++... .|.+...|..++|||+..    +++..-+  -|...|+.+.-.|.           ...++|++.|++|
T Consensus       328 IA~~Fdet~~-klscVYndhSlYvWDvrD~~kvgk~~s~l--yHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TI  404 (1080)
T KOG1408|consen  328 IACQFDETTD-KLSCVYNDHSLYVWDVRDVNKVGKCSSML--YHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTI  404 (1080)
T ss_pred             eEEEecCCCc-eEEEEEcCceEEEEeccccccccceeeee--eccceeeeeccccccccCcccccCCccceeEecCCCcE
Confidence            3678998877 788888899999999986    3444444  59999998887661           2268999999999


Q ss_pred             EEEEecCCCCCCc----e-----------------------------eEecccCCCCCeEEEEecCCCEEEEEeCCCceE
Q 005656           71 KMWIFDTTDGDPR----L-----------------------------LRFRSGHSAPPLCIRFYANGRHILSAGQDRAFR  117 (685)
Q Consensus        71 ~iWd~~~~~~~~~----~-----------------------------~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~  117 (685)
                      ++|+++.......    +                             ....-+....+.+++.+|+|++|++|..-|+++
T Consensus       405 RlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~Gnlr  484 (1080)
T KOG1408|consen  405 RLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLR  484 (1080)
T ss_pred             EEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceE
Confidence            9999876321100    0                             000112345689999999999999999999999


Q ss_pred             EEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecC
Q 005656          118 LFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRP  197 (685)
Q Consensus       118 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  197 (685)
                      ||++..-.....+...                 -..+.++...  .......+++....+..+.++|......   .+.+
T Consensus       485 Vy~Lq~l~~~~~~eAH-----------------esEilcLeyS--~p~~~~kLLASasrdRlIHV~Dv~rny~---l~qt  542 (1080)
T KOG1408|consen  485 VYDLQELEYTCFMEAH-----------------ESEILCLEYS--FPVLTNKLLASASRDRLIHVYDVKRNYD---LVQT  542 (1080)
T ss_pred             EEEehhhhhhhheecc-----------------cceeEEEeec--CchhhhHhhhhccCCceEEEEecccccc---hhhh
Confidence            9999765543332211                 1112111111  0111123455566677888998765432   2334


Q ss_pred             CCCCCCCeEEEEEccCC--CEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCe
Q 005656          198 CPENPTAVKACTISACG--NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD  275 (685)
Q Consensus       198 ~~~~~~~v~~~~~s~~g--~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~  275 (685)
                      ..+|...|+++.|-..|  ..+++++.|..|.+--.+.......+...   ........+..++++|..+++++++.|..
T Consensus       543 ld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~---t~t~~ktTlYDm~Vdp~~k~v~t~cQDrn  619 (1080)
T KOG1408|consen  543 LDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRH---TQTLSKTTLYDMAVDPTSKLVVTVCQDRN  619 (1080)
T ss_pred             hcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecccc---ccccccceEEEeeeCCCcceEEEEecccc
Confidence            44889999999998887  67788888877654433321111112100   00122457899999999999999999999


Q ss_pred             EEEEECCCCceEEEeecC----CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEE
Q 005656          276 IKVWDFKGRDLKSRWEVG----CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLL  351 (685)
Q Consensus       276 i~iwd~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~  351 (685)
                      |+|||+.+++....+...    +....+...|.|.++|+.+.|.++.+||..+++++.+..||...|+.+.|++|.+.|+
T Consensus       620 irif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlI  699 (1080)
T KOG1408|consen  620 IRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLI  699 (1080)
T ss_pred             eEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhhe
Confidence            999999999999988753    6788899999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCcEEEEEcCCC
Q 005656          352 SSGMDGSLRIWDVILA  367 (685)
Q Consensus       352 s~s~Dg~I~iwd~~~~  367 (685)
                      +.+.||.|.||.++.-
T Consensus       700 SvsgDgCIFvW~lp~~  715 (1080)
T KOG1408|consen  700 SVSGDGCIFVWKLPLT  715 (1080)
T ss_pred             eecCCceEEEEECchh
Confidence            9999999999998763

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.94  E-value=5.6e-25  Score=211.38  Aligned_cols=304  Identities=20%  Similarity=0.277  Sum_probs=237.0

Q ss_pred             EeCCCCeeeEEeecccccCeeEEEEeCCCc--EEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecC-CCE
Q 005656           30 WNLEKRRLQSVIREAHDNAIISLHFFANEP--VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-GRH  106 (685)
Q Consensus        30 wd~~~~~~~~~~~~~h~~~V~~l~~sp~~~--~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-~~~  106 (685)
                      .|+.+-.....++ .|.+.|++++|+|..+  ++++|..-|+|-+||+.+......-+..+..|+++|.++.|+|. ...
T Consensus       171 l~l~~~~~~~v~k-v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~  249 (498)
T KOG4328|consen  171 LDLDDYRILNVAK-VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQ  249 (498)
T ss_pred             cccccceecceeE-ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhh
Confidence            3444444555565 7899999999999654  88888889999999997555444556667899999999999995 568


Q ss_pred             EEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcC
Q 005656          107 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ  186 (685)
Q Consensus       107 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  186 (685)
                      +++.+.||+|++-|+........+..                                                      
T Consensus       250 i~ssSyDGtiR~~D~~~~i~e~v~s~------------------------------------------------------  275 (498)
T KOG4328|consen  250 IYSSSYDGTIRLQDFEGNISEEVLSL------------------------------------------------------  275 (498)
T ss_pred             eeeeccCceeeeeeecchhhHHHhhc------------------------------------------------------
Confidence            99999999999999976643222210                                                      


Q ss_pred             ccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCC-C
Q 005656          187 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-T  265 (685)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~  265 (685)
                                  ......+..+.++.+...+++|..=|...+||++++.......       .-|...|.+++++|.. .
T Consensus       276 ------------~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~-------~lh~kKI~sv~~NP~~p~  336 (498)
T KOG4328|consen  276 ------------DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENL-------RLHKKKITSVALNPVCPW  336 (498)
T ss_pred             ------------CccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhh-------hhhhcccceeecCCCCch
Confidence                        0223456778888888888999888899999999876643322       2788899999999976 5


Q ss_pred             EEEEEECCCeEEEEECCCCc-----eEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcC----CCeeEEEEecCCC
Q 005656          266 LMISAGYHGDIKVWDFKGRD-----LKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVV----ALRMVRKFEGHTD  336 (685)
Q Consensus       266 ~l~s~s~dg~i~iwd~~~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~----~~~~~~~~~~h~~  336 (685)
                      +++|+|.|++.+|||++...     .+.++.+...|.+..|+|.+..|++.+.|..|+|||..    .-.+..++. |..
T Consensus       337 ~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~  415 (498)
T KOG4328|consen  337 FLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNN  415 (498)
T ss_pred             heeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccC
Confidence            78999999999999998532     36677788999999999999999999999999999984    334444443 332


Q ss_pred             ------CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccc--eEEE-EEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          337 ------RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS--ITAL-SLSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       337 ------~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~--v~~v-~~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                            ......|.|+..++++|-.-..|-|+|-..++.+..+..+..  |.++ .|+|-+..+++|+..++.|+||.++
T Consensus       416 ~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  416 RTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK  495 (498)
T ss_pred             cccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence                  134568999999999999999999999988888887765443  5444 7999999788888777799999865


Q ss_pred             C
Q 005656          408 C  408 (685)
Q Consensus       408 ~  408 (685)
                      .
T Consensus       496 ~  496 (498)
T KOG4328|consen  496 K  496 (498)
T ss_pred             C
Confidence            3

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.94  E-value=1.8e-25  Score=216.42  Aligned_cols=282  Identities=11%  Similarity=0.193  Sum_probs=237.9

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCC---eeeEEeec-ccccCeeEEEEeCCCcEEEEecCCCcEEEEEec
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR---RLQSVIRE-AHDNAIISLHFFANEPVLMSASADNSIKMWIFD   76 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~---~~~~~~~~-~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~   76 (685)
                      |..-|.++++|...+ .++||+. |.|+|||+...   ..+..+.. ....-|+++..+|||+.|++|+.-.++.|||+.
T Consensus       418 HGEvVcAvtIS~~tr-hVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA  495 (705)
T KOG0639|consen  418 HGEVVCAVTISNPTR-HVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA  495 (705)
T ss_pred             cCcEEEEEEecCCcc-eeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence            566788899998888 8899885 77999999753   23333321 245679999999999999999999999999998


Q ss_pred             CCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceee
Q 005656           77 TTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA  156 (685)
Q Consensus        77 ~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (685)
                      ....  ++...+....-...+++.+||.+..+++..||.|.|||+.+...++.+.                         
T Consensus       496 apTp--rikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq-------------------------  548 (705)
T KOG0639|consen  496 APTP--RIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ-------------------------  548 (705)
T ss_pred             CCCc--chhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeeccc-------------------------
Confidence            7643  3333343444556788999999999999999999999998877666553                         


Q ss_pred             eecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcc
Q 005656          157 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS  236 (685)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~  236 (685)
                                                                 +|...+.|+.++++|..|.+|+-|.+|+.||++.+..
T Consensus       549 -------------------------------------------GhtDGascIdis~dGtklWTGGlDntvRcWDlregrq  585 (705)
T KOG0639|consen  549 -------------------------------------------GHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQ  585 (705)
T ss_pred             -------------------------------------------CCCCCceeEEecCCCceeecCCCccceeehhhhhhhh
Confidence                                                       8899999999999999999999999999999999887


Q ss_pred             ccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCe
Q 005656          237 RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLV  316 (685)
Q Consensus       237 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  316 (685)
                      ....         .....|.++..+|++.+++.|-.++.+.+.............+.+.|.++.|.+.|+++++.+.|+-
T Consensus       586 lqqh---------dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnl  656 (705)
T KOG0639|consen  586 LQQH---------DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL  656 (705)
T ss_pred             hhhh---------hhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhh
Confidence            7654         5568899999999999999999999999998877666666666789999999999999999999999


Q ss_pred             EEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005656          317 IRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV  364 (685)
Q Consensus       317 I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~  364 (685)
                      +..|...-|..+...+ ..+.|.++.+|.|.++++|||.|..-.||.+
T Consensus       657 LnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  657 LNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             hhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            9999998888777665 5678999999999999999999988888875

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.3e-25  Score=216.55  Aligned_cols=232  Identities=21%  Similarity=0.329  Sum_probs=196.9

Q ss_pred             CCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecC----
Q 005656            2 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT----   77 (685)
Q Consensus         2 ~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~----   77 (685)
                      .|+|+|++-+|+|. +|+.|+..|.|++|.+.+|.++..+. +|-..|+|+.|+.||.+|+|||.||.|.+|.+..    
T Consensus        81 Pg~v~al~s~n~G~-~l~ag~i~g~lYlWelssG~LL~v~~-aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a  158 (476)
T KOG0646|consen   81 PGPVHALASSNLGY-FLLAGTISGNLYLWELSSGILLNVLS-AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSA  158 (476)
T ss_pred             ccceeeeecCCCce-EEEeecccCcEEEEEeccccHHHHHH-hhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccc
Confidence            47899999999998 88888899999999999999999997 9999999999999999999999999999998743    


Q ss_pred             -CCCCCceeEecccCCCCCeEEEEecC--CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCce
Q 005656           78 -TDGDPRLLRFRSGHSAPPLCIRFYAN--GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV  154 (685)
Q Consensus        78 -~~~~~~~~~~~~~h~~~v~~i~~~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (685)
                       .+....+++.+.+|.-+|+.+...+.  ..+|+|+|.|.++++||+..+.....+                        
T Consensus       159 ~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti------------------------  214 (476)
T KOG0646|consen  159 DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI------------------------  214 (476)
T ss_pred             ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE------------------------
Confidence             23356788889999999999998765  468999999999999999888765554                        


Q ss_pred             eeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCC
Q 005656          155 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG  234 (685)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~  234 (685)
                                                                   ..+..+.+++++|-++.+++|+.+|.|.+.++..-
T Consensus       215 ---------------------------------------------~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~  249 (476)
T KOG0646|consen  215 ---------------------------------------------TFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKL  249 (476)
T ss_pred             ---------------------------------------------ecCCcceeEEEcccccEEEecCCcceEEeeehhcC
Confidence                                                         34678999999999999999999999999887543


Q ss_pred             c--cc------cccccccccccCCCCc--CEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEee-cCCceeEEEEee
Q 005656          235 I--SR------GSYLDMSERSNYAHNG--EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE-VGCSLVKIVYHR  303 (685)
Q Consensus       235 ~--~~------~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~  303 (685)
                      .  ..      ............+|.+  .|+|++++-||..|++|+.||.|.+||+.+.++++++. ..++|+.+.+.|
T Consensus       250 ~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~  329 (476)
T KOG0646|consen  250 SGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINP  329 (476)
T ss_pred             CcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeec
Confidence            3  11      1111122234458888  99999999999999999999999999999999999888 568888888765


Q ss_pred             c
Q 005656          304 V  304 (685)
Q Consensus       304 ~  304 (685)
                      -
T Consensus       330 ~  330 (476)
T KOG0646|consen  330 L  330 (476)
T ss_pred             c
Confidence            3

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.4e-24  Score=225.53  Aligned_cols=281  Identities=15%  Similarity=0.265  Sum_probs=228.5

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCC-eeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR-RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD   79 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~-~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~   79 (685)
                      |+++-+.|+|.|+|. +|.|++.||.|++|+..+. +....+. .|...|.+++..  +.+|++|+.+++|.+|.++.+.
T Consensus        12 ht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~ti~-~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~   87 (933)
T KOG1274|consen   12 HTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPETID-ISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE   87 (933)
T ss_pred             ccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCchhh-ccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence            788899999999999 9999999999999998776 4444554 477888888765  5599999999999999998774


Q ss_pred             CCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeec
Q 005656           80 GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC  159 (685)
Q Consensus        80 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (685)
                      ...    .+....-++++++|+.+|++++.||.|-.|++.++.+....+.+.                            
T Consensus        88 ~~~----iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr----------------------------  135 (933)
T KOG1274|consen   88 EDT----ILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR----------------------------  135 (933)
T ss_pred             ccc----eeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeec----------------------------
Confidence            322    223457789999999999999999999999999988776655553                            


Q ss_pred             ccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccc
Q 005656          160 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGS  239 (685)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~  239 (685)
                                                              +|..+|.++.++|++++|++.+.||.|++||++++.....
T Consensus       136 ----------------------------------------gh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~t  175 (933)
T KOG1274|consen  136 ----------------------------------------GHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKT  175 (933)
T ss_pred             ----------------------------------------ccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhh
Confidence                                                    7899999999999999999999999999999999998877


Q ss_pred             cccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC---CceeEEEEeecCCEEEEEeCCCe
Q 005656          240 YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVADDLV  316 (685)
Q Consensus       240 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~dg~  316 (685)
                      +..............+..++|+|+|..++..+.|+.|++|+..+......+...   ..+.++.|+|+|.|||+++.||.
T Consensus       176 l~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~  255 (933)
T KOG1274|consen  176 LTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQ  255 (933)
T ss_pred             cccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCc
Confidence            765443333233566788999999888988999999999999998887776543   55999999999999999999999


Q ss_pred             EEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 005656          317 IRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRI  361 (685)
Q Consensus       317 I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~i  361 (685)
                      |.|||.++...    ......|++++|-|++.-+-.-..-|...+
T Consensus       256 I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~  296 (933)
T KOG1274|consen  256 ILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGV  296 (933)
T ss_pred             EEEEecccchh----ccccceeEEEecCCCCCeeEEEeecccccc
Confidence            99999998221    223467999999998875544433443333

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=5.6e-25  Score=211.51  Aligned_cols=284  Identities=14%  Similarity=0.213  Sum_probs=229.2

Q ss_pred             CCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCC--eeeEEeecccccCeeEEEEeCCCc-EEEEecCCCcEEEEEecCC
Q 005656            2 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKR--RLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTT   78 (685)
Q Consensus         2 ~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~--~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~D~~v~iWd~~~~   78 (685)
                      .++|+||.|+|..+ +|.+|+.||.++||.+...  ..++.+. --..+|.+++|.|+|. .+++++....+..||+.+.
T Consensus       213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~lqS~~-l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a  290 (514)
T KOG2055|consen  213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKLQSIH-LEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA  290 (514)
T ss_pred             cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhheeee-eccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence            46899999999887 9999999999999988653  3455554 4578999999999999 9999999999999999765


Q ss_pred             CCCCceeEecccCC-CCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeee
Q 005656           79 DGDPRLLRFRSGHS-APPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF  157 (685)
Q Consensus        79 ~~~~~~~~~~~~h~-~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (685)
                      .-  ..+....++. ..+.....++++++|+..|..|.|.+....+++....+                           
T Consensus       291 k~--~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~---------------------------  341 (514)
T KOG2055|consen  291 KV--TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF---------------------------  341 (514)
T ss_pred             cc--ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee---------------------------
Confidence            32  2233334444 35667788999999999999999999988877765555                           


Q ss_pred             ecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccc
Q 005656          158 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR  237 (685)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~  237 (685)
                                                                ...+.|..++|+.+|+.+++.+.+|.|++||++...+.
T Consensus       342 ------------------------------------------KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~  379 (514)
T KOG2055|consen  342 ------------------------------------------KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCL  379 (514)
T ss_pred             ------------------------------------------eeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceE
Confidence                                                      33677899999999999999999999999999999888


Q ss_pred             cccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCC------CceEEEee-cCCceeEEEEeecCCEEEE
Q 005656          238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG------RDLKSRWE-VGCSLVKIVYHRVNGLLAT  310 (685)
Q Consensus       238 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~------~~~~~~~~-~~~~i~~~~~~~~~~~l~~  310 (685)
                      ..+..       ...-.-++++.++++.++|+|+..|.|.|||.++      .+++..+. ....|+++.|++++.+||.
T Consensus       380 ~rf~D-------~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAi  452 (514)
T KOG2055|consen  380 HRFVD-------DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAI  452 (514)
T ss_pred             EEEee-------cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhh
Confidence            77742       1122335677789999999999999999999653      23443332 3478999999999999998


Q ss_pred             EeC--CCeEEEEEcCCCeeEEEEecC---CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005656          311 VAD--DLVIRLFDVVALRMVRKFEGH---TDRITDFCFSEDGKWLLSSGMDGSLRIWDVI  365 (685)
Q Consensus       311 ~~~--dg~I~i~d~~~~~~~~~~~~h---~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~  365 (685)
                      ++.  +..+++..+.+......|...   -+.|+|++|||.|.+||.|..+|.|.+|.+.
T Consensus       453 aS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  453 ASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             hhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            875  568999999887777666543   3468999999999999999999999999874

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=2.8e-25  Score=203.36  Aligned_cols=287  Identities=20%  Similarity=0.314  Sum_probs=221.3

Q ss_pred             eeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCce
Q 005656           37 LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAF  116 (685)
Q Consensus        37 ~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i  116 (685)
                      +.+.+. ||.++|..++.....+.+.+++.|.+.+||.++++    +++..+.||.+.|++|.|++.+.++++++.|++-
T Consensus       140 lvre~~-GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg----~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~ta  214 (481)
T KOG0300|consen  140 LVRELE-GHKDGIWHVAADSTQPICGTASADHTARIWSLESG----ACLATYTGHTGSVNSIKFHNSGLLLLTASGDETA  214 (481)
T ss_pred             ehhhhc-ccccceeeehhhcCCcceeecccccceeEEeeccc----cceeeecccccceeeEEeccccceEEEccCCcch
Confidence            445555 99999999999888899999999999999999998    8899999999999999999999999999999999


Q ss_pred             EEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeec
Q 005656          117 RLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR  196 (685)
Q Consensus       117 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  196 (685)
                      .||...-.-....   +..                 | ...+..                                ....
T Consensus       215 HIW~~av~~~vP~---~~a-----------------~-~~hSsE--------------------------------eE~e  241 (481)
T KOG0300|consen  215 HIWKAAVNWEVPS---NNA-----------------P-SDHSSE--------------------------------EEEE  241 (481)
T ss_pred             HHHHHhhcCcCCC---CCC-----------------C-CCCCch--------------------------------hhhh
Confidence            9997321100000   000                 0 000000                                0000


Q ss_pred             CCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeE
Q 005656          197 PCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDI  276 (685)
Q Consensus       197 ~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i  276 (685)
                      ....+ .+-+.-....||.         +|++       +.        ....+|.+.|.+..|-..|+.+++++.|.+.
T Consensus       242 ~sDe~-~~d~d~~~~sD~~---------tiRv-------Pl--------~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTA  296 (481)
T KOG0300|consen  242 HSDEH-NRDTDSSEKSDGH---------TIRV-------PL--------MRLTGHRAVVSACDWLAGGQQMVTASWDRTA  296 (481)
T ss_pred             ccccc-ccccccccccCCc---------eeee-------ee--------eeeeccccceEehhhhcCcceeeeeeccccc
Confidence            00000 0000000011111         1111       11        1233899999999999999999999999999


Q ss_pred             EEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCC-eeEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 005656          277 KVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDGKWLLSSG  354 (685)
Q Consensus       277 ~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~I~~l~~spdg~~l~s~s  354 (685)
                      .+||++++.++..+..+ ...+.++-+|..+++++++.|.+.++||.+.. ..+..|.||+..|+++.|.-|. .+++|+
T Consensus       297 nlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgS  375 (481)
T KOG0300|consen  297 NLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGS  375 (481)
T ss_pred             eeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecC
Confidence            99999999999988766 78899999999999999999999999999844 5678899999999999999765 589999


Q ss_pred             CCCcEEEEEcCCC-ceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656          355 MDGSLRIWDVILA-RQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRC  408 (685)
Q Consensus       355 ~Dg~I~iwd~~~~-~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~  408 (685)
                      .|.+|+|||++.. .++.+++..++++.++.+..++.+|.-+.+. .|++|++..
T Consensus       376 DDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNR-qvRlfDlnG  429 (481)
T KOG0300|consen  376 DDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNR-QVRLFDLNG  429 (481)
T ss_pred             CCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCc-eEEEEecCC
Confidence            9999999999864 5789999999999999999999999998775 999999643

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=6.8e-25  Score=200.93  Aligned_cols=282  Identities=15%  Similarity=0.239  Sum_probs=213.3

Q ss_pred             EEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCce
Q 005656            5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRL   84 (685)
Q Consensus         5 V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~   84 (685)
                      -.|+.|++.|. +||+|+.||.|.|||+.+...-+.+. +|..+|.+++||+||+.|+|+|.|..|++||+..++    +
T Consensus        26 a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar~ls-aH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs----~   99 (405)
T KOG1273|consen   26 AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIARMLS-AHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS----P   99 (405)
T ss_pred             cceEEeccCcc-eeeeeccCCcEEEEEccccchhhhhh-ccccceeEEEecCCCCEeeeecCCceeEEEeccCCC----c
Confidence            57999999999 99999999999999999998777776 999999999999999999999999999999998874    3


Q ss_pred             eEecccCCCCCeEEEEecCCC-EEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccccc
Q 005656           85 LRFRSGHSAPPLCIRFYANGR-HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIR  163 (685)
Q Consensus        85 ~~~~~~h~~~v~~i~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (685)
                      +..+ ....+|+.+.|+|-.. ..+.+-.+..-.+.++..... ..+..                               
T Consensus       100 l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~-------------------------------  146 (405)
T KOG1273|consen  100 LKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPK-------------------------------  146 (405)
T ss_pred             eeEE-EccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccC-------------------------------
Confidence            3332 3578999999999533 333332233333333322110 00000                               


Q ss_pred             ccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccc
Q 005656          164 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDM  243 (685)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~  243 (685)
                                                      ...........+..|.+.|+++++|+..|.+.+||..+-+++..+.. 
T Consensus       147 --------------------------------d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~ri-  193 (405)
T KOG1273|consen  147 --------------------------------DDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRI-  193 (405)
T ss_pred             --------------------------------CCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeee-
Confidence                                            00001122334457899999999999999999999999988877642 


Q ss_pred             cccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCC-------ceE--EEee---cCCceeEEEEeecCCEEEEE
Q 005656          244 SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-------DLK--SRWE---VGCSLVKIVYHRVNGLLATV  311 (685)
Q Consensus       244 ~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~-------~~~--~~~~---~~~~i~~~~~~~~~~~l~~~  311 (685)
                            .....|..+.++..|+.++.-+.|..|+.|+++.-       .+.  +.+.   ....=.+++|+.+|.+++.+
T Consensus       194 ------ts~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~  267 (405)
T KOG1273|consen  194 ------TSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAG  267 (405)
T ss_pred             ------chheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEec
Confidence                  22368899999999999999999999999998621       111  1111   11344678999999988877


Q ss_pred             eC-CCeEEEEEcCCCeeEEEEecCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005656          312 AD-DLVIRLFDVVALRMVRKFEGHT-DRITDFCFSEDGKWLLSSGMDGSLRIWDVI  365 (685)
Q Consensus       312 ~~-dg~I~i~d~~~~~~~~~~~~h~-~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~  365 (685)
                      +. -..++||.-..|.+++.+.|.. ....++.|+|-...+++- ..|.|+||...
T Consensus       268 s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~  322 (405)
T KOG1273|consen  268 SARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVV  322 (405)
T ss_pred             cccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEee
Confidence            64 4689999999999999999887 567899999988888877 67899999854

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.3e-25  Score=198.65  Aligned_cols=249  Identities=19%  Similarity=0.275  Sum_probs=196.3

Q ss_pred             EEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEec--CCCEEEEEeCCCce
Q 005656           39 SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA--NGRHILSAGQDRAF  116 (685)
Q Consensus        39 ~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~--~~~~l~s~s~dg~i  116 (685)
                      .++...|.+.|..+...--|+.|+|++.|++|+|+.+....+ ..++..+.||.+||+.++|..  .|..|++++.||.|
T Consensus         4 q~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~-s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkV   82 (299)
T KOG1332|consen    4 QTIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ-SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKV   82 (299)
T ss_pred             eehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC-ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceE
Confidence            344458999999999888899999999999999999876533 467888999999999999965  59999999999999


Q ss_pred             EEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeec
Q 005656          117 RLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR  196 (685)
Q Consensus       117 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  196 (685)
                      .||.-.+++-.+..                                                                  
T Consensus        83 IiWke~~g~w~k~~------------------------------------------------------------------   96 (299)
T KOG1332|consen   83 IIWKEENGRWTKAY------------------------------------------------------------------   96 (299)
T ss_pred             EEEecCCCchhhhh------------------------------------------------------------------
Confidence            99986544211100                                                                  


Q ss_pred             CCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCC--CCEEEEEECCC
Q 005656          197 PCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST--NTLMISAGYHG  274 (685)
Q Consensus       197 ~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~s~dg  274 (685)
                                                                        ....|...|++++|.|.  |-.|++++.||
T Consensus        97 --------------------------------------------------e~~~h~~SVNsV~wapheygl~LacasSDG  126 (299)
T KOG1332|consen   97 --------------------------------------------------EHAAHSASVNSVAWAPHEYGLLLACASSDG  126 (299)
T ss_pred             --------------------------------------------------hhhhhcccceeecccccccceEEEEeeCCC
Confidence                                                              11178889999999886  45788889999


Q ss_pred             eEEEEECCCC-c---eEEEeecCCceeEEEEeec---C-----------CEEEEEeCCCeEEEEEcCCC--eeEEEEecC
Q 005656          275 DIKVWDFKGR-D---LKSRWEVGCSLVKIVYHRV---N-----------GLLATVADDLVIRLFDVVAL--RMVRKFEGH  334 (685)
Q Consensus       275 ~i~iwd~~~~-~---~~~~~~~~~~i~~~~~~~~---~-----------~~l~~~~~dg~I~i~d~~~~--~~~~~~~~h  334 (685)
                      .|.+.++++. .   ......|.-.+++++|.|.   |           +.|++|+.|..|+||+..++  +.-++|.+|
T Consensus       127 ~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H  206 (299)
T KOG1332|consen  127 KVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGH  206 (299)
T ss_pred             cEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhc
Confidence            9999988754 1   1112234467888999886   3           56999999999999999875  445568999


Q ss_pred             CCCeEEEEEcCCC----CEEEEEeCCCcEEEEEcCCC--ceeeEE--eeccceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656          335 TDRITDFCFSEDG----KWLLSSGMDGSLRIWDVILA--RQIDAI--HVDVSITALSLSPNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       335 ~~~I~~l~~spdg----~~l~s~s~Dg~I~iwd~~~~--~~i~~~--~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~  405 (685)
                      .+.|.+++|.|.-    .+||++|.||+|.||.....  .-..++  .++..+..++||+.|.+|++++.|. .|.+|.
T Consensus       207 ~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdN-kvtlwk  284 (299)
T KOG1332|consen  207 KDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDN-KVTLWK  284 (299)
T ss_pred             chhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCc-EEEEEE
Confidence            9999999999953    48999999999999987521  111111  2456699999999999999999885 999996

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.94  E-value=9.5e-25  Score=216.03  Aligned_cols=281  Identities=16%  Similarity=0.282  Sum_probs=219.9

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCc--EEEEecCCCcEEEEEecCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP--VLMSASADNSIKMWIFDTT   78 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~--~l~s~s~D~~v~iWd~~~~   78 (685)
                      |+|.|.||+..|.|. +||+|+.||+|+||.+.+|+++.++.  ..+.|.|++|+|.+.  .||++-.+ .+.|-+..-+
T Consensus       399 Htg~Vr~iSvdp~G~-wlasGsdDGtvriWEi~TgRcvr~~~--~d~~I~~vaw~P~~~~~vLAvA~~~-~~~ivnp~~G  474 (733)
T KOG0650|consen  399 HTGLVRSISVDPSGE-WLASGSDDGTVRIWEIATGRCVRTVQ--FDSEIRSVAWNPLSDLCVLAVAVGE-CVLIVNPIFG  474 (733)
T ss_pred             cCCeEEEEEecCCcc-eeeecCCCCcEEEEEeecceEEEEEe--ecceeEEEEecCCCCceeEEEEecC-ceEEeCcccc
Confidence            899999999999999 99999999999999999999999986  678999999999775  44444332 2333322111


Q ss_pred             ---------------------------------CCCCceeEecccCCCCCeEEEEecCCCEEEEEeCC---CceEEEEee
Q 005656           79 ---------------------------------DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD---RAFRLFSVI  122 (685)
Q Consensus        79 ---------------------------------~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d---g~i~vwd~~  122 (685)
                                                       +...+-++..-.|..+|..+.|+..|.||++...+   ..|.|.++.
T Consensus       475 ~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLS  554 (733)
T KOG0650|consen  475 DRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLS  554 (733)
T ss_pred             chhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecc
Confidence                                             11111122334578899999999999999987664   356666654


Q ss_pred             cCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCC
Q 005656          123 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP  202 (685)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  202 (685)
                      .....                                                                    .+.....
T Consensus       555 K~~sQ--------------------------------------------------------------------~PF~ksk  566 (733)
T KOG0650|consen  555 KRKSQ--------------------------------------------------------------------SPFRKSK  566 (733)
T ss_pred             ccccc--------------------------------------------------------------------CchhhcC
Confidence            33221                                                                    1222456


Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005656          203 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  282 (685)
Q Consensus       203 ~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~  282 (685)
                      +.+.++.|+|...++++++.. .|++||+..+..+..+.        .....|..++++|.|..|+.++.|+.+..+|+.
T Consensus       567 G~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~--------tg~kwiS~msihp~GDnli~gs~d~k~~WfDld  637 (733)
T KOG0650|consen  567 GLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKLL--------TGSKWISSMSIHPNGDNLILGSYDKKMCWFDLD  637 (733)
T ss_pred             CceeEEEecCCCceEEEEecc-ceEEEehhHHHHHHHHh--------cCCeeeeeeeecCCCCeEEEecCCCeeEEEEcc
Confidence            789999999999999998765 59999999887777664        566789999999999999999999999999998


Q ss_pred             CC-ceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcC------C---CeeEEEEecCCCC----eEEEEEcCCC
Q 005656          283 GR-DLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVV------A---LRMVRKFEGHTDR----ITDFCFSEDG  347 (685)
Q Consensus       283 ~~-~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~------~---~~~~~~~~~h~~~----I~~l~~spdg  347 (685)
                      -. ++.+++.++ ..++.++||+.-.++++|+.||++.||.-.      .   --++..++||...    |.++.|+|..
T Consensus       638 lsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~q  717 (733)
T KOG0650|consen  638 LSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQ  717 (733)
T ss_pred             cCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCC
Confidence            43 455555554 789999999999999999999999998532      1   1456778899766    8999999999


Q ss_pred             CEEEEEeCCCcEEEE
Q 005656          348 KWLLSSGMDGSLRIW  362 (685)
Q Consensus       348 ~~l~s~s~Dg~I~iw  362 (685)
                      .||++++.||+|++|
T Consensus       718 pWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  718 PWLFSAGADGTIRLF  732 (733)
T ss_pred             ceEEecCCCceEEee
Confidence            999999999999998

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.94  E-value=2.4e-24  Score=195.55  Aligned_cols=289  Identities=20%  Similarity=0.291  Sum_probs=222.2

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe------------ee--EEeecccccCeeEEEEeC-CCcEEEEec
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR------------LQ--SVIREAHDNAIISLHFFA-NEPVLMSAS   65 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~------------~~--~~~~~~h~~~V~~l~~sp-~~~~l~s~s   65 (685)
                      |.|.|+++...+....++++|+.||.|.|||++...            ++  ..-..+|.-.|.++.|.| |...+.+++
T Consensus        42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssS  121 (397)
T KOG4283|consen   42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSS  121 (397)
T ss_pred             CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeeccc
Confidence            889999999998644499999999999999997532            10  111247889999999999 445888889


Q ss_pred             CCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecC---CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhc
Q 005656           66 ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN---GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKL  142 (685)
Q Consensus        66 ~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  142 (685)
                      .|.++++||.++-    +....+ ...+.|.+-+++|-   ..++++|..|-.|++-|+..+.....+.           
T Consensus       122 FDhtlKVWDtnTl----Q~a~~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls-----------  185 (397)
T KOG4283|consen  122 FDHTLKVWDTNTL----QEAVDF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS-----------  185 (397)
T ss_pred             ccceEEEeecccc----eeeEEe-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec-----------
Confidence            9999999998876    333222 34566777777773   4467788888999999999998777765           


Q ss_pred             cccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCE-EEEEe
Q 005656          143 KMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNF-AVLGT  221 (685)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~g~  221 (685)
                                                                               +|...|.++.|+|...+ |++|+
T Consensus       186 ---------------------------------------------------------GHr~~vlaV~Wsp~~e~vLatgs  208 (397)
T KOG4283|consen  186 ---------------------------------------------------------GHRDGVLAVEWSPSSEWVLATGS  208 (397)
T ss_pred             ---------------------------------------------------------cccCceEEEEeccCceeEEEecC
Confidence                                                                     88999999999998876 57899


Q ss_pred             cCCcEEEEECCCC-ccccccc-----cc-cccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEE-e---
Q 005656          222 AGGWIERFNLQSG-ISRGSYL-----DM-SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSR-W---  290 (685)
Q Consensus       222 ~dg~i~~~d~~~~-~~~~~~~-----~~-~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~---  290 (685)
                      .||.|++||++.. .+...+.     .. ......+|.+.|.+++|..++.++++++.|..+++|+..+|+-... +   
T Consensus       209 aDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~  288 (397)
T KOG4283|consen  209 ADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPI  288 (397)
T ss_pred             CCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccc
Confidence            9999999999754 1111111     11 1113458999999999999999999999999999999987643211 1   


Q ss_pred             ----ecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005656          291 ----EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV  364 (685)
Q Consensus       291 ----~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~  364 (685)
                          ..+-.+. +. +-+...++.--.++.+.++.+-.+..++.+.+|-..|.+.++-|+-+...+++.|+.|..|-.
T Consensus       289 ~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  289 IHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             cccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence                1111111 22 334445555555699999999999999999999989999999999999999999999999975

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.93  E-value=4.3e-24  Score=193.90  Aligned_cols=283  Identities=16%  Similarity=0.263  Sum_probs=221.8

Q ss_pred             ccccCeeEEEEeC-CCcEEEEecCCCcEEEEEecCCCCC--------Cce---eEecccCCCCCeEEEEec-CCCEEEEE
Q 005656           44 AHDNAIISLHFFA-NEPVLMSASADNSIKMWIFDTTDGD--------PRL---LRFRSGHSAPPLCIRFYA-NGRHILSA  110 (685)
Q Consensus        44 ~h~~~V~~l~~sp-~~~~l~s~s~D~~v~iWd~~~~~~~--------~~~---~~~~~~h~~~v~~i~~~~-~~~~l~s~  110 (685)
                      .|.+.|+++...+ .|+++++|+.||.|.+||+...+..        ..+   .....+|...|..+.|.| |...+.++
T Consensus        41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss  120 (397)
T KOG4283|consen   41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS  120 (397)
T ss_pred             cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence            7999999999988 5789999999999999999765411        111   122357889999999999 55678889


Q ss_pred             eCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCcccc
Q 005656          111 GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVL  190 (685)
Q Consensus       111 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~  190 (685)
                      +-|.+++|||+.+-+....+                                                            
T Consensus       121 SFDhtlKVWDtnTlQ~a~~F------------------------------------------------------------  140 (397)
T KOG4283|consen  121 SFDHTLKVWDTNTLQEAVDF------------------------------------------------------------  140 (397)
T ss_pred             cccceEEEeecccceeeEEe------------------------------------------------------------
Confidence            99999999999887765555                                                            


Q ss_pred             CceeecCCCCCCCCeEEEEEccC---CCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCE-
Q 005656          191 GEHILRPCPENPTAVKACTISAC---GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTL-  266 (685)
Q Consensus       191 ~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-  266 (685)
                               ..++.|.+-++||-   -..+++|+.+-.|++.|+++|.....+.        +|.+.|.++.|+|...+ 
T Consensus       141 ---------~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls--------GHr~~vlaV~Wsp~~e~v  203 (397)
T KOG4283|consen  141 ---------KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS--------GHRDGVLAVEWSPSSEWV  203 (397)
T ss_pred             ---------ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec--------cccCceEEEEeccCceeE
Confidence                     23455666666663   3578899999999999999999988876        99999999999998875 


Q ss_pred             EEEEECCCeEEEEECCCC-ceEEEe---------------ecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEE
Q 005656          267 MISAGYHGDIKVWDFKGR-DLKSRW---------------EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRK  330 (685)
Q Consensus       267 l~s~s~dg~i~iwd~~~~-~~~~~~---------------~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~  330 (685)
                      |++|+.||.|++||++.. .+...+               .+.+.+..++|..++.++++++.|..+++|+..+|+....
T Consensus       204 LatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~  283 (397)
T KOG4283|consen  204 LATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLR  283 (397)
T ss_pred             EEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCccccc
Confidence            688999999999999853 222222               2336789999999999999999999999999988754221


Q ss_pred             -Ee--cCCCC----eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEE
Q 005656          331 -FE--GHTDR----ITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVY  402 (685)
Q Consensus       331 -~~--~h~~~----I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~  402 (685)
                       +-  .|+..    +. +. +-+...++---.++.+.++++-+|..+..+..|.. +.|.++-|+-+...++..|+ .|+
T Consensus       284 ~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~-ni~  360 (397)
T KOG4283|consen  284 EFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNG-NIY  360 (397)
T ss_pred             ccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCC-ccc
Confidence             11  12221    11 22 33444555555678999999999999999988765 99999999999999999998 799


Q ss_pred             EEEc
Q 005656          403 LWVN  406 (685)
Q Consensus       403 lW~~  406 (685)
                      .|..
T Consensus       361 ~w~p  364 (397)
T KOG4283|consen  361 MWSP  364 (397)
T ss_pred             cccc
Confidence            9975

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.8e-23  Score=182.73  Aligned_cols=248  Identities=20%  Similarity=0.317  Sum_probs=197.0

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCee-----eEEeecccccCeeEEEEeCC----CcEEEEecCCCcEE
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL-----QSVIREAHDNAIISLHFFAN----EPVLMSASADNSIK   71 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~-----~~~~~~~h~~~V~~l~~sp~----~~~l~s~s~D~~v~   71 (685)
                      |+|.|.|.+|||+|+ ++|||+.|.+|++.-++...+     -..+. -|++.|..++|..+    +.+|++++. |..+
T Consensus        88 hkgsiyc~~ws~~ge-liatgsndk~ik~l~fn~dt~~~~g~dle~n-mhdgtirdl~fld~~~s~~~il~s~ga-gdc~  164 (350)
T KOG0641|consen   88 HKGSIYCTAWSPCGE-LIATGSNDKTIKVLPFNADTCNATGHDLEFN-MHDGTIRDLAFLDDPESGGAILASAGA-GDCK  164 (350)
T ss_pred             cCccEEEEEecCccC-eEEecCCCceEEEEecccccccccCcceeee-ecCCceeeeEEecCCCcCceEEEecCC-Ccce
Confidence            899999999999999 999999999999986654332     12333 69999999999764    457777664 4445


Q ss_pred             EEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccccccccc
Q 005656           72 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL  151 (685)
Q Consensus        72 iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (685)
                      ||..+-+.+  +.+..+.||.+-|.++ ++-+|-.+++|+.|.+|++||++-..++..+.....                
T Consensus       165 iy~tdc~~g--~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~----------------  225 (350)
T KOG0641|consen  165 IYITDCGRG--QGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFH----------------  225 (350)
T ss_pred             EEEeecCCC--CcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCccc----------------
Confidence            554444333  6677889999999876 344688999999999999999987776665532100                


Q ss_pred             CceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEEC
Q 005656          152 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL  231 (685)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~  231 (685)
                                                                   ...-..+.|.++++.|.|+.+++|..|....+||+
T Consensus       226 ---------------------------------------------~~glessavaav~vdpsgrll~sg~~dssc~lydi  260 (350)
T KOG0641|consen  226 ---------------------------------------------DGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDI  260 (350)
T ss_pred             ---------------------------------------------CCCcccceeEEEEECCCcceeeeccCCCceEEEEe
Confidence                                                         00012467899999999999999999999999999


Q ss_pred             CCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCC-----ceEEEeecCCceeEEEEeecCC
Q 005656          232 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-----DLKSRWEVGCSLVKIVYHRVNG  306 (685)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~-----~~~~~~~~~~~i~~~~~~~~~~  306 (685)
                      +.+..++.|-        .|...|+|+.|+|...++++|+.|..|++-|+...     .....-++...+..+.|+|..-
T Consensus       261 rg~r~iq~f~--------phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~  332 (350)
T KOG0641|consen  261 RGGRMIQRFH--------PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDF  332 (350)
T ss_pred             eCCceeeeeC--------CCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccc
Confidence            9999998875        89999999999999999999999999999998743     1222334557888999999999


Q ss_pred             EEEEEeCCCeEEEEEcC
Q 005656          307 LLATVADDLVIRLFDVV  323 (685)
Q Consensus       307 ~l~~~~~dg~I~i~d~~  323 (685)
                      -+++.+.|.++.+|-+.
T Consensus       333 sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  333 SFISSSADKTATLWALN  349 (350)
T ss_pred             eeeeccCcceEEEeccC
Confidence            99999999999999753

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.93  E-value=2.6e-24  Score=213.84  Aligned_cols=387  Identities=18%  Similarity=0.240  Sum_probs=263.6

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeE-----EeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEe
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQS-----VIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF   75 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~-----~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~   75 (685)
                      |.+.|+.+.|+|-...+||||+.|..|+||.+..+....     ....+-.-.|-++.|+|...-|+..+.-|+++|||+
T Consensus        78 H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~i~D~  157 (1012)
T KOG1445|consen   78 HGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSVYITDI  157 (1012)
T ss_pred             ccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceEEEEEc
Confidence            788899999999766699999999999999998543211     222233457889999997665555556789999999


Q ss_pred             cCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCcee
Q 005656           76 DTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI  155 (685)
Q Consensus        76 ~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (685)
                      .++    +.+..+.+|...|.++.|+.||..|++++.|..|+|||.+..........++...+..+              
T Consensus       158 stq----k~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsR--------------  219 (1012)
T KOG1445|consen  158 STQ----KTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSR--------------  219 (1012)
T ss_pred             ccC----ceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhhe--------------
Confidence            988    77788899999999999999999999999999999999876544333323222211111              


Q ss_pred             eeecccccccCCcceEEEEcCC---ceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEE-EecCCcEEEEEC
Q 005656          156 AFDCAEIRERDWCNVVTCHMDT---AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL-GTAGGWIERFNL  231 (685)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-g~~dg~i~~~d~  231 (685)
                           ......|..+++.+...   ..+++||.+......+.+..  .....+.---+.||.+.++. |-.+..++.+.+
T Consensus       220 -----v~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tlel--d~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~  292 (1012)
T KOG1445|consen  220 -----VLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLEL--DSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEM  292 (1012)
T ss_pred             -----eeeccchhhhhhcccchhhheeeeeeeccccCCcceeEEe--ecccceEeeeecCCCceEEEecCCcceEEEEEe
Confidence                 11223455566555543   56778888876655544433  22334555566777766544 344556666666


Q ss_pred             CCCcccccc------ccc-------------------------c------------------------------------
Q 005656          232 QSGISRGSY------LDM-------------------------S------------------------------------  244 (685)
Q Consensus       232 ~~~~~~~~~------~~~-------------------------~------------------------------------  244 (685)
                      +..+..-.-      ...                         .                                    
T Consensus       293 ~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~~a  372 (1012)
T KOG1445|consen  293 QDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGCTA  372 (1012)
T ss_pred             cCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCccCcCc
Confidence            543221000      000                         0                                    


Q ss_pred             --------------------------------------------------------------------------------
Q 005656          245 --------------------------------------------------------------------------------  244 (685)
Q Consensus       245 --------------------------------------------------------------------------------  244 (685)
                                                                                                      
T Consensus       373 geWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~~~~e~  452 (1012)
T KOG1445|consen  373 GEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVPKKEEV  452 (1012)
T ss_pred             cceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcCcchhh
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 005656          245 --------------------------------------------------------------------------------  244 (685)
Q Consensus       245 --------------------------------------------------------------------------------  244 (685)
                                                                                                      
T Consensus       453 r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~~~s  532 (1012)
T KOG1445|consen  453 RELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGKPIS  532 (1012)
T ss_pred             hhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCccccccCCCCCCcccCCCcc
Confidence                                                                                            


Q ss_pred             --------------------------ccccCCCCcC----EEEE---------EEcCCCCEEEE--EECCCeEEEEECCC
Q 005656          245 --------------------------ERSNYAHNGE----VVGV---------ACDSTNTLMIS--AGYHGDIKVWDFKG  283 (685)
Q Consensus       245 --------------------------~~~~~~h~~~----v~~l---------~~~~~~~~l~s--~s~dg~i~iwd~~~  283 (685)
                                                .....+|.+.    ...+         -|+.++.++++  ++..|.|-||+++.
T Consensus       533 at~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~rvAVPL~g~gG~iai~el~~  612 (1012)
T KOG1445|consen  533 ATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCANNKRVAVPLAGSGGVIAIYELNE  612 (1012)
T ss_pred             ccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCceeeccceEEEEecCCCceEEEEEcCC
Confidence                                      0000000000    0000         01112222222  23456777777763


Q ss_pred             -Cce----EEEeecCCceeEEEEeec-CCEEEEEeCCCeEEEEEcCCC-------eeEEEEecCCCCeEEEEEcC-CCCE
Q 005656          284 -RDL----KSRWEVGCSLVKIVYHRV-NGLLATVADDLVIRLFDVVAL-------RMVRKFEGHTDRITDFCFSE-DGKW  349 (685)
Q Consensus       284 -~~~----~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~I~i~d~~~~-------~~~~~~~~h~~~I~~l~~sp-dg~~  349 (685)
                       |++    +-.+..+..|+.+.|.|- ...||++++||.|++|.+..+       .+-..+.+|...|+.+.|+| -...
T Consensus       613 PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadv  692 (1012)
T KOG1445|consen  613 PGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADV  692 (1012)
T ss_pred             CCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhH
Confidence             221    223334577899999984 559999999999999998754       44567889999999999999 4568


Q ss_pred             EEEEeCCCcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEEcCCCcCCC
Q 005656          350 LLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGD  413 (685)
Q Consensus       350 l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~~~~~~~~~  413 (685)
                      |++++.|.+|++||+.+++....+..|.. |.+++|||||+.+|+.+.|| .|++|..+..-.++
T Consensus       693 La~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg-~~rVy~Prs~e~pv  756 (1012)
T KOG1445|consen  693 LAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDG-TLRVYEPRSREQPV  756 (1012)
T ss_pred             hhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCc-eEEEeCCCCCCCcc
Confidence            99999999999999999999888887766 99999999999999999998 99999877665544

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=9.9e-25  Score=193.12  Aligned_cols=248  Identities=15%  Similarity=0.194  Sum_probs=196.0

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCC---eeeEEeecccccCeeEEEEeC--CCcEEEEecCCCcEEEEEe
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR---RLQSVIREAHDNAIISLHFFA--NEPVLMSASADNSIKMWIF   75 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~---~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~s~D~~v~iWd~   75 (685)
                      |++.|..+...--|+ .|||+++|++|+|+.+.+.   +++..+. ||.++|..++|..  -|.+||+++.||.|.||.-
T Consensus        10 H~D~IHda~lDyygk-rlATcsSD~tVkIf~v~~n~~s~ll~~L~-Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke   87 (299)
T KOG1332|consen   10 HEDMIHDAQLDYYGK-RLATCSSDGTVKIFEVRNNGQSKLLAELT-GHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE   87 (299)
T ss_pred             hhhhhhHhhhhhhcc-eeeeecCCccEEEEEEcCCCCceeeeEec-CCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence            666777777777888 9999999999999998764   5677887 9999999999987  7899999999999999965


Q ss_pred             cCCCCCCceeEecccCCCCCeEEEEecC--CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCc
Q 005656           76 DTTDGDPRLLRFRSGHSAPPLCIRFYAN--GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKP  153 (685)
Q Consensus        76 ~~~~~~~~~~~~~~~h~~~v~~i~~~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (685)
                      ..+  ..........|...|++++|.|.  |-.|++++.||.|.|.+......-..-                       
T Consensus        88 ~~g--~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~-----------------------  142 (299)
T KOG1332|consen   88 ENG--RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTS-----------------------  142 (299)
T ss_pred             CCC--chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccch-----------------------
Confidence            544  55666677889999999999996  778999999999999988655111000                       


Q ss_pred             eeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccC---C-----------CEEEE
Q 005656          154 VIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC---G-----------NFAVL  219 (685)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g-----------~~l~~  219 (685)
                                                                +....|.-.+.+++|.|.   |           +.|++
T Consensus       143 ------------------------------------------ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvS  180 (299)
T KOG1332|consen  143 ------------------------------------------KIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVS  180 (299)
T ss_pred             ------------------------------------------hhhhccccccceeeecCcCCCccccccCcccccceeec
Confidence                                                      001145666777777775   4           56999


Q ss_pred             EecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCC----CEEEEEECCCeEEEEECCCC--ceEEE--ee
Q 005656          220 GTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN----TLMISAGYHGDIKVWDFKGR--DLKSR--WE  291 (685)
Q Consensus       220 g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~----~~l~s~s~dg~i~iwd~~~~--~~~~~--~~  291 (685)
                      |+.|..|.+|+..++.-...-      ...+|.+.|+.++|.|..    .+|++|+.||++.||.....  .-..+  -.
T Consensus       181 gGcDn~VkiW~~~~~~w~~e~------~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~  254 (299)
T KOG1332|consen  181 GGCDNLVKIWKFDSDSWKLER------TLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEE  254 (299)
T ss_pred             cCCccceeeeecCCcchhhhh------hhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccccccc
Confidence            999999999999987433221      234999999999999964    57999999999999987632  11111  12


Q ss_pred             cCCceeEEEEeecCCEEEEEeCCCeEEEEEcC
Q 005656          292 VGCSLVKIVYHRVNGLLATVADDLVIRLFDVV  323 (685)
Q Consensus       292 ~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~  323 (685)
                      .+..+..+.|++.|++|++++.|+.|.+|--.
T Consensus       255 f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  255 FPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             CCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence            35789999999999999999999999999644

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=4.8e-24  Score=205.30  Aligned_cols=267  Identities=17%  Similarity=0.279  Sum_probs=217.8

Q ss_pred             eEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccc
Q 005656           85 LRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE  164 (685)
Q Consensus        85 ~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (685)
                      +.....|..+|++++++|++++.++++.+|+|.-|++.+++....+.......+..                        
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~------------------------  190 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSH------------------------  190 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhc------------------------
Confidence            45567899999999999999999999999999999999887653332111000000                        


Q ss_pred             cCCcceEEEEcCCceEEEEEcCccccCceeecCC-CCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccc
Q 005656          165 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC-PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDM  243 (685)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~  243 (685)
                                                + ..+.+. ..|...+.++++|+||+|+++|..|..|.+|+.++..++..+.  
T Consensus       191 --------------------------~-~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~--  241 (479)
T KOG0299|consen  191 --------------------------G-NPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFK--  241 (479)
T ss_pred             --------------------------c-CCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhccc--
Confidence                                      0 001111 2677889999999999999999999999999999999998875  


Q ss_pred             cccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEe-ecCCceeEEEEeecCCEEEEEeCCCeEEEEEc
Q 005656          244 SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRW-EVGCSLVKIVYHRVNGLLATVADDLVIRLFDV  322 (685)
Q Consensus       244 ~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~  322 (685)
                            +|.+.|.+++|-.....+++++.|++|++|++.....+.++ .|...|..+.....++.+-+|+.|.++++|++
T Consensus       242 ------ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi  315 (479)
T KOG0299|consen  242 ------GHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKI  315 (479)
T ss_pred             ------ccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEec
Confidence                  99999999999888888999999999999999987766554 45588999998888889999999999999999


Q ss_pred             CCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEee-------------ccceEEEEEcCCCC
Q 005656          323 VALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV-------------DVSITALSLSPNMD  389 (685)
Q Consensus       323 ~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~-------------~~~v~~v~~spdg~  389 (685)
                      .. +.--.+.+|.+.+-|++|-.+ ..+++||++|.|.+|++...+++.+.+.             +..|++++..|..+
T Consensus       316 ~e-esqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd  393 (479)
T KOG0299|consen  316 PE-ESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD  393 (479)
T ss_pred             cc-cceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCc
Confidence            43 334457889999999999854 5799999999999999999988877642             11488999999999


Q ss_pred             eEEEEEeCCCeEEEEEcCCCcCCC
Q 005656          390 VLATAHVDQNGVYLWVNRCMFSGD  413 (685)
Q Consensus       390 ~Lat~~~d~~~I~lW~~~~~~~~~  413 (685)
                      ++|+|+.+| .|++|.....|...
T Consensus       394 L~asGS~~G-~vrLW~i~~g~r~i  416 (479)
T KOG0299|consen  394 LLASGSWSG-CVRLWKIEDGLRAI  416 (479)
T ss_pred             eEEecCCCC-ceEEEEecCCcccc
Confidence            999999998 99999876665433

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.5e-24  Score=221.04  Aligned_cols=288  Identities=16%  Similarity=0.264  Sum_probs=220.0

Q ss_pred             CCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe----eeEEeec--ccccCeeEEEEeC-CCcEEEEecCCCcEEEEE
Q 005656            2 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR----LQSVIRE--AHDNAIISLHFFA-NEPVLMSASADNSIKMWI   74 (685)
Q Consensus         2 ~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~----~~~~~~~--~h~~~V~~l~~sp-~~~~l~s~s~D~~v~iWd   74 (685)
                      +++.++|+..++-..+++.|-  ..+.||.+....    +....+.  .-...+..+.|.. +.++|||++..|.|.+||
T Consensus        39 k~~~nAIs~nr~~~qiv~AGr--s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWd  116 (839)
T KOG0269|consen   39 KAKANAISVNRDINQIVVAGR--SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWD  116 (839)
T ss_pred             ccccceEeecCCcceeEEecc--cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEe
Confidence            356778888888763444442  456777665422    1111110  1112355677764 457999999999999999


Q ss_pred             ecCCCCCCceeEecccCCCCCeEEEEecC-CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCc
Q 005656           75 FDTTDGDPRLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKP  153 (685)
Q Consensus        75 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (685)
                      +... ...+.+..+..|...++++.|++. ..+|++||.||+|++||++..+....+.                      
T Consensus       117 lnk~-~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~----------------------  173 (839)
T KOG0269|consen  117 LNKS-IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFR----------------------  173 (839)
T ss_pred             cCcc-ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccc----------------------
Confidence            9874 233666778899999999999985 5689999999999999998776544432                      


Q ss_pred             eeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEcc-CCCEEEEEecCCcEEEEECC
Q 005656          154 VIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQ  232 (685)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~~~d~~  232 (685)
                                                                    .....|+.+.|+| .++.++++.++|.+.+||++
T Consensus       174 ----------------------------------------------~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlR  207 (839)
T KOG0269|consen  174 ----------------------------------------------SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLR  207 (839)
T ss_pred             ----------------------------------------------ccchhhhceeeccCCCceEEEecCCceEEEeecc
Confidence                                                          3456788999998 67899999999999999998


Q ss_pred             CCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc--eEEEeecCCceeEEEEeecCC-EEE
Q 005656          233 SGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD--LKSRWEVGCSLVKIVYHRVNG-LLA  309 (685)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~i~~~~~~~~~~-~l~  309 (685)
                      ....-..       ...+|.++|.|+.|+|++.+|||||.|+.|+|||..+.+  .+.++....++.++.|-|... .||
T Consensus       208 qp~r~~~-------k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLA  280 (839)
T KOG0269|consen  208 QPDRCEK-------KLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLA  280 (839)
T ss_pred             CchhHHH-------HhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhh
Confidence            6543222       223999999999999999999999999999999998654  455666679999999999877 566


Q ss_pred             EEe--CCCeEEEEEcCCC-eeEEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCC
Q 005656          310 TVA--DDLVIRLFDVVAL-RMVRKFEGHTDRITDFCFSE-DGKWLLSSGMDGSLRIWDVILA  367 (685)
Q Consensus       310 ~~~--~dg~I~i~d~~~~-~~~~~~~~h~~~I~~l~~sp-dg~~l~s~s~Dg~I~iwd~~~~  367 (685)
                      +++  .|-.|+|||++.. -+.+++..|...++.++|-. |...+.+++.||+|.--.++++
T Consensus       281 tcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  281 TCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA  342 (839)
T ss_pred             hhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence            665  4779999999865 56778889999999999965 4557889999998876665544

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.93  E-value=6.5e-24  Score=211.88  Aligned_cols=314  Identities=17%  Similarity=0.191  Sum_probs=217.8

Q ss_pred             EEEcc--CCCCEEEEEeCCCcEEEEeCCCCeee------EEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCC
Q 005656            8 LAFSS--DGQPLLASGASSGVISIWNLEKRRLQ------SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD   79 (685)
Q Consensus         8 l~fsp--dg~~~latg~~dg~I~vwd~~~~~~~------~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~   79 (685)
                      ..|++  ..+++||.+..+|.|.++|.......      .... .|...|..+.|.|....|++++.|.++++||+... 
T Consensus        55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~-aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s-  132 (720)
T KOG0321|consen   55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPL-AHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS-  132 (720)
T ss_pred             ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccc-cccceeEeeccCCCceeEEEccCCceeeeeeeccc-
Confidence            55654  34579999999999999998764433      3333 89999999999997779999999999999999887 


Q ss_pred             CCCceeE--ecccCCCCCeEEEEecC-CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceee
Q 005656           80 GDPRLLR--FRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA  156 (685)
Q Consensus        80 ~~~~~~~--~~~~h~~~v~~i~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (685)
                         ++..  .+.||.+.|.+++|.|. ...|++|+.||.|.|||++........      .....+....   ...| ..
T Consensus       133 ---~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e------~~~~~~~~~~---n~~p-tp  199 (720)
T KOG0321|consen  133 ---RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALE------EFDNRIYGRH---NTAP-TP  199 (720)
T ss_pred             ---eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHH------HHhhhhhccc---cCCC-CC
Confidence               3333  36799999999999996 457889999999999999765411100      0000000000   0000 00


Q ss_pred             eecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEE---EEEccCCCEEEEEec-CCcEEEEECC
Q 005656          157 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKA---CTISACGNFAVLGTA-GGWIERFNLQ  232 (685)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~---~~~s~~g~~l~~g~~-dg~i~~~d~~  232 (685)
                      ..+.                               .........+...+.+   +.+..|...|++++. |+.|++||++
T Consensus       200 skp~-------------------------------~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLR  248 (720)
T KOG0321|consen  200 SKPL-------------------------------KKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLR  248 (720)
T ss_pred             Cchh-------------------------------hccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeec
Confidence            0000                               0000001122333333   556667777877776 9999999999


Q ss_pred             CCccccccccccccccCCC---CcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc--eEEEeecC---CceeEEEEeec
Q 005656          233 SGISRGSYLDMSERSNYAH---NGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD--LKSRWEVG---CSLVKIVYHRV  304 (685)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~h---~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~---~~i~~~~~~~~  304 (685)
                      ..................|   .-.+.++..+..|.++.+.+.|+.|++||+.+..  ++..+.+.   .-...-..+|+
T Consensus       249 k~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd  328 (720)
T KOG0321|consen  249 KNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPD  328 (720)
T ss_pred             ccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCC
Confidence            8766544433322233344   4568889999999988888889999999998643  23333222   22334567899


Q ss_pred             CCEEEEEeCCCeEEEEEcCCCe-eEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCC
Q 005656          305 NGLLATVADDLVIRLFDVVALR-MVRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILA  367 (685)
Q Consensus       305 ~~~l~~~~~dg~I~i~d~~~~~-~~~~~~~h~~~I~~l~~spdg-~~l~s~s~Dg~I~iwd~~~~  367 (685)
                      +.++++|+.|...++|.+.+.+ ....+.||.-.|++++|.|.. .-+++++.|.+++||++..+
T Consensus       329 ~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  329 DCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             CceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            9999999999999999998864 456678999999999998732 34777799999999999654

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=7e-23  Score=187.45  Aligned_cols=286  Identities=15%  Similarity=0.256  Sum_probs=211.0

Q ss_pred             EEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecC--CCEEEEEeCCCce
Q 005656           39 SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--GRHILSAGQDRAF  116 (685)
Q Consensus        39 ~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~--~~~l~s~s~dg~i  116 (685)
                      ..+..+|.+-|+++.|.+.|+.+|||+.|++|+|||.+..++.+.+-...+.|.+.|..+.|.+.  |+.+++++.|+++
T Consensus         6 ~pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv   85 (361)
T KOG2445|consen    6 APIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTV   85 (361)
T ss_pred             cccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCce
Confidence            34455899999999999999999999999999999998888889999999999999999999663  9999999999999


Q ss_pred             EEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeec
Q 005656          117 RLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR  196 (685)
Q Consensus       117 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  196 (685)
                      .||.-....    ...                                              .-+-|..         ..
T Consensus        86 ~iWEE~~~~----~~~----------------------------------------------~~~~Wv~---------~t  106 (361)
T KOG2445|consen   86 SIWEEQEKS----EEA----------------------------------------------HGRRWVR---------RT  106 (361)
T ss_pred             eeeeecccc----ccc----------------------------------------------ccceeEE---------EE
Confidence            999743111    000                                              0001110         11


Q ss_pred             CCCCCCCCeEEEEEcc--CCCEEEEEecCCcEEEEECCCCcccc------ccccccccccCCCCcCEEEEEEcCCC---C
Q 005656          197 PCPENPTAVKACTISA--CGNFAVLGTAGGWIERFNLQSGISRG------SYLDMSERSNYAHNGEVVGVACDSTN---T  265 (685)
Q Consensus       197 ~~~~~~~~v~~~~~s~--~g~~l~~g~~dg~i~~~d~~~~~~~~------~~~~~~~~~~~~h~~~v~~l~~~~~~---~  265 (685)
                      ......+.|+.+.|.|  -|-.+++++.||.+++|+........      .+.... .....+..+..|+.|+|..   .
T Consensus       107 tl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~-~pp~~~~~~~~CvsWn~sr~~~p  185 (361)
T KOG2445|consen  107 TLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVI-DPPGKNKQPCFCVSWNPSRMHEP  185 (361)
T ss_pred             EeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhcc-CCcccccCcceEEeeccccccCc
Confidence            1125577899999998  57789999999999999875432221      111111 1222567788999999753   5


Q ss_pred             EEEEEECC-----CeEEEEECCCCc--e--EEEe-ecCCceeEEEEeecCC----EEEEEeCCCeEEEEEcCCC------
Q 005656          266 LMISAGYH-----GDIKVWDFKGRD--L--KSRW-EVGCSLVKIVYHRVNG----LLATVADDLVIRLFDVVAL------  325 (685)
Q Consensus       266 ~l~s~s~d-----g~i~iwd~~~~~--~--~~~~-~~~~~i~~~~~~~~~~----~l~~~~~dg~I~i~d~~~~------  325 (685)
                      +|+.|+.+     +.++||....+.  .  +.++ .+..+|+.++|.|+-.    +||+++.|| |+||.+...      
T Consensus       186 ~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~  264 (361)
T KOG2445|consen  186 LIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEE  264 (361)
T ss_pred             eEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhh
Confidence            67777755     478898876432  2  2222 3458999999999743    899999999 999998731      


Q ss_pred             --------------eeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC---CceeeEEeeccceEEEEEc
Q 005656          326 --------------RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL---ARQIDAIHVDVSITALSLS  385 (685)
Q Consensus       326 --------------~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~---~~~i~~~~~~~~v~~v~~s  385 (685)
                                    +.+..+.+|++.|..+.|+-.|..|++.|.||.||+|...-   .++...+.....++...|+
T Consensus       265 ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~e~~~~~~~~~  341 (361)
T KOG2445|consen  265 EEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKAEGSVTKPDFS  341 (361)
T ss_pred             hcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEeccCCCCCcccc
Confidence                          34566789999999999999999999999999999997643   3455555555445444443

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.92  E-value=2e-23  Score=206.68  Aligned_cols=321  Identities=14%  Similarity=0.187  Sum_probs=235.4

Q ss_pred             eEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCC-EEEEEeCCCce
Q 005656           38 QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQDRAF  116 (685)
Q Consensus        38 ~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~s~dg~i  116 (685)
                      -..++ ||++.|.++...|.|.+|++|+.||+|+||.+.++    ++++... ..+.|.|++|+|.+. .++.+..++.+
T Consensus       393 ~lvyr-GHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg----Rcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~  466 (733)
T KOG0650|consen  393 ALVYR-GHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG----RCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECV  466 (733)
T ss_pred             eeeEe-ccCCeEEEEEecCCcceeeecCCCCcEEEEEeecc----eEEEEEe-ecceeEEEEecCCCCceeEEEEecCce
Confidence            33455 99999999999999999999999999999999998    7877753 456899999999754 33344444446


Q ss_pred             EEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeec
Q 005656          117 RLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR  196 (685)
Q Consensus       117 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  196 (685)
                      .+.+..-+...........             +...|                  .-......+..|.-........-+.
T Consensus       467 ~ivnp~~G~~~e~~~t~el-------------l~~~~------------------~~~~p~~~~~~W~~~~~~e~~~~v~  515 (733)
T KOG0650|consen  467 LIVNPIFGDRLEVGPTKEL-------------LASAP------------------NESEPDAAVVTWSRASLDELEKGVC  515 (733)
T ss_pred             EEeCccccchhhhcchhhh-------------hhcCC------------------CccCCcccceeechhhhhhhccceE
Confidence            6665544422111100000             00000                  0011223556676553322221122


Q ss_pred             CCCCCCCCeEEEEEccCCCEEEEEecC---CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC
Q 005656          197 PCPENPTAVKACTISACGNFAVLGTAG---GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH  273 (685)
Q Consensus       197 ~~~~~~~~v~~~~~s~~g~~l~~g~~d---g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d  273 (685)
                      ....+...|..+.|+..|.|+++...+   ..|.++++..+.....|.        ...+.|.++.|+|...++++++. 
T Consensus       516 ~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~--------kskG~vq~v~FHPs~p~lfVaTq-  586 (733)
T KOG0650|consen  516 IVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFR--------KSKGLVQRVKFHPSKPYLFVATQ-  586 (733)
T ss_pred             EEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchh--------hcCCceeEEEecCCCceEEEEec-
Confidence            222678899999999999999987664   468888887766655443        55678999999999988888874 


Q ss_pred             CeEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCC-eeEEEEecCCCCeEEEEEcCCCCEEE
Q 005656          274 GDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDGKWLL  351 (685)
Q Consensus       274 g~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~I~~l~~spdg~~l~  351 (685)
                      ..|++||+..+.++..+..+ ..|..++.+|.|..|++|+.|+.+..||+.-. ++.++++-|...+++++|++.-.+++
T Consensus       587 ~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfa  666 (733)
T KOG0650|consen  587 RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFA  666 (733)
T ss_pred             cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceee
Confidence            78999999987776655544 67899999999999999999999999999854 78888999999999999999999999


Q ss_pred             EEeCCCcEEEEEc------CCCc---eeeEEeecc-----ceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656          352 SSGMDGSLRIWDV------ILAR---QIDAIHVDV-----SITALSLSPNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       352 s~s~Dg~I~iwd~------~~~~---~i~~~~~~~-----~v~~v~~spdg~~Lat~~~d~~~I~lW~  405 (685)
                      +|+.||++.||.-      -..-   ++..+++|.     .|..+.|+|...+|++++.|+ +|++|.
T Consensus       667 s~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~-tirlfT  733 (733)
T KOG0650|consen  667 SGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADG-TIRLFT  733 (733)
T ss_pred             eecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCc-eEEeeC
Confidence            9999999999842      1222   223344332     388889999999999999997 999993

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.92  E-value=3.5e-23  Score=199.61  Aligned_cols=254  Identities=19%  Similarity=0.335  Sum_probs=195.6

Q ss_pred             cccccCeeEEEEeCCCc-EEEEecCCCcEEEEEecCCCCCCc------eeEecccCCCCCeEEEEecC-CCEEEEEeCCC
Q 005656           43 EAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPR------LLRFRSGHSAPPLCIRFYAN-GRHILSAGQDR  114 (685)
Q Consensus        43 ~~h~~~V~~l~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~------~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~dg  114 (685)
                      ..|.+.|+.+.+.|..+ ++++.+..+.|.|||+......+.      +-..+.||...-.+++|++. ..+|++++.|+
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~  200 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH  200 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence            36999999999999766 667778889999999977644332      23366789988888999985 45899999999


Q ss_pred             ceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCcee
Q 005656          115 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI  194 (685)
Q Consensus       115 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  194 (685)
                      +|++||+.........                                                                
T Consensus       201 ~i~lwdi~~~~~~~~~----------------------------------------------------------------  216 (422)
T KOG0264|consen  201 TICLWDINAESKEDKV----------------------------------------------------------------  216 (422)
T ss_pred             cEEEEeccccccCCcc----------------------------------------------------------------
Confidence            9999998543211000                                                                


Q ss_pred             ecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCC-CEEEEEECC
Q 005656          195 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYH  273 (685)
Q Consensus       195 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~d  273 (685)
                                +                             ..+.        ...+|...|..++|++.. ..+++++.|
T Consensus       217 ----------~-----------------------------~p~~--------~~~~h~~~VeDV~~h~~h~~lF~sv~dd  249 (422)
T KOG0264|consen  217 ----------V-----------------------------DPKT--------IFSGHEDVVEDVAWHPLHEDLFGSVGDD  249 (422)
T ss_pred             ----------c-----------------------------cceE--------EeecCCcceehhhccccchhhheeecCC
Confidence                      0                             0000        112899999999999965 578899999


Q ss_pred             CeEEEEECCC--CceEEEee-cCCceeEEEEeecCC-EEEEEeCCCeEEEEEcCCC-eeEEEEecCCCCeEEEEEcCCC-
Q 005656          274 GDIKVWDFKG--RDLKSRWE-VGCSLVKIVYHRVNG-LLATVADDLVIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDG-  347 (685)
Q Consensus       274 g~i~iwd~~~--~~~~~~~~-~~~~i~~~~~~~~~~-~l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~I~~l~~spdg-  347 (685)
                      +.+.|||+++  .++..... +.+.+.|++|+|-+. +||+|+.|++|.+||+++. +++.++.+|...|..+.|||+. 
T Consensus       250 ~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~e  329 (422)
T KOG0264|consen  250 GKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNE  329 (422)
T ss_pred             CeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCC
Confidence            9999999994  44444333 458999999999765 8899999999999999975 6788999999999999999965 


Q ss_pred             CEEEEEeCCCcEEEEEcCCCce--------------eeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          348 KWLLSSGMDGSLRIWDVILARQ--------------IDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       348 ~~l~s~s~Dg~I~iwd~~~~~~--------------i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                      ..||+++.|+.+.|||+..-..              +..-.+|.. |..+.|+|...+++++-.++|.+.||...
T Consensus       330 tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  330 TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            5888999999999999864221              122223333 99999999998777666666799999754

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.91  E-value=1.1e-22  Score=195.67  Aligned_cols=291  Identities=15%  Similarity=0.187  Sum_probs=222.0

Q ss_pred             CCCcEEEEEEccCCC-CEEEEEeCCCcEEEEeCCCC---e-eeEEeecccccCeeEEEEeCCC-cEEEEecCCCcEEEEE
Q 005656            1 MRGAVTALAFSSDGQ-PLLASGASSGVISIWNLEKR---R-LQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWI   74 (685)
Q Consensus         1 h~~~V~~l~fspdg~-~~latg~~dg~I~vwd~~~~---~-~~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~D~~v~iWd   74 (685)
                      |.++|++++|+|... .++|+|...|.|-+||+.+.   . -+..+ ..|.++|.++.|+|.. ..+++.|.||+|+.-|
T Consensus       185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f-~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D  263 (498)
T KOG4328|consen  185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLF-TPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQD  263 (498)
T ss_pred             cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEe-ccCCccccceEecCCChhheeeeccCceeeeee
Confidence            568999999999765 69999999999999999522   1 23333 4899999999999965 4888999999999999


Q ss_pred             ecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCce
Q 005656           75 FDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV  154 (685)
Q Consensus        75 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (685)
                      ++....  ..+............+.|+.+...++.+..=|.+.+||++++......                        
T Consensus       264 ~~~~i~--e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~------------------------  317 (498)
T KOG4328|consen  264 FEGNIS--EEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYEN------------------------  317 (498)
T ss_pred             ecchhh--HHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchh------------------------
Confidence            986522  223333334556677888888888888888889999999877542211                        


Q ss_pred             eeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEECCC
Q 005656          155 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGGWIERFNLQS  233 (685)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~~~d~~~  233 (685)
                                                                 ..-|...|++++++|.. .++++++.|++.++||++.
T Consensus       318 -------------------------------------------~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~  354 (498)
T KOG4328|consen  318 -------------------------------------------LRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQ  354 (498)
T ss_pred             -------------------------------------------hhhhhcccceeecCCCCchheeecccCcceeeeehhh
Confidence                                                       11445589999999955 6789999999999999987


Q ss_pred             CccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECC----CCceEEEeecC------CceeEEEEee
Q 005656          234 GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK----GRDLKSRWEVG------CSLVKIVYHR  303 (685)
Q Consensus       234 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~----~~~~~~~~~~~------~~i~~~~~~~  303 (685)
                      -.....    +......|...|.+..|+|.+-.|++.+.|..|+|||..    .-.+..++.|.      -......|.|
T Consensus       355 l~~K~s----p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P  430 (498)
T KOG4328|consen  355 LRGKAS----PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDP  430 (498)
T ss_pred             hcCCCC----cceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCC
Confidence            655443    011344899999999999998889999999999999983    44555566554      2345678999


Q ss_pred             cCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCC-CeEE-EEEcCCCCEEE-EEeCCCcEEEEEcC
Q 005656          304 VNGLLATVADDLVIRLFDVVALRMVRKFEGHTD-RITD-FCFSEDGKWLL-SSGMDGSLRIWDVI  365 (685)
Q Consensus       304 ~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~-~I~~-l~~spdg~~l~-s~s~Dg~I~iwd~~  365 (685)
                      +..++++|-.-..|-|||-..++.+..+.+... .|.+ ..|+|-+..++ .++..|.|+||--.
T Consensus       431 ~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  431 DYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK  495 (498)
T ss_pred             CccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence            999999999988999999999998888765443 4544 47999877444 44577888888644

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=1.1e-24  Score=220.36  Aligned_cols=233  Identities=17%  Similarity=0.337  Sum_probs=209.7

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG   80 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~   80 (685)
                      |...|.|+.....++ .+++|+.|-.+-+|.+.....+..+. +|..+|.++.|+++..+|++|+.+|+|++||+...  
T Consensus        27 hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~S~~-~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA--  102 (825)
T KOG0267|consen   27 HSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAITSLT-GHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA--  102 (825)
T ss_pred             hhhhhceeeeeccce-eeccCCCceeeccccccCCchhheee-ccCCcceeeecCcchhhhcccccCCceeeeehhhh--
Confidence            566777888777777 89999999999999998887777777 99999999999999999999999999999999977  


Q ss_pred             CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656           81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  160 (685)
Q Consensus        81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (685)
                        +.++.+.||...+.++.|+|-+.+.++++.|+.+++||++...+...+.                             
T Consensus       103 --k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~-----------------------------  151 (825)
T KOG0267|consen  103 --KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK-----------------------------  151 (825)
T ss_pred             --hhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeec-----------------------------
Confidence              8888999999999999999999999999999999999998666655543                             


Q ss_pred             cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656          161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  240 (685)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~  240 (685)
                                                             +|...+.++.|+|+|++++.|++|..+++||...|+....|
T Consensus       152 ---------------------------------------s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef  192 (825)
T KOG0267|consen  152 ---------------------------------------SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEF  192 (825)
T ss_pred             ---------------------------------------CCcceeEEEeecCCCceeeccCCcceeeeeccccccccccc
Confidence                                                   56777899999999999999999999999999999999888


Q ss_pred             ccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCC
Q 005656          241 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDL  315 (685)
Q Consensus       241 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg  315 (685)
                      .        .|.+.+..+.|+|..-.+++||.|+++++||+++...+...... ..|.+..|+|++..+++|....
T Consensus       193 ~--------~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  193 K--------SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             c--------cccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence            6        89999999999999999999999999999999988877766554 7899999999999999887654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.91  E-value=6.6e-23  Score=205.02  Aligned_cols=275  Identities=16%  Similarity=0.306  Sum_probs=220.2

Q ss_pred             cEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCc
Q 005656            4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPR   83 (685)
Q Consensus         4 ~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~   83 (685)
                      .|..++|-|||..+++.+  +..+.+||.+.|.++.+++ +|.+.|+|++|+.||+.+++|+.|..|.+|.-...    -
T Consensus        14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG~llqtLK-gHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE----G   86 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDGTLLQPLK-GHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE----G   86 (1081)
T ss_pred             chheeEECCCCceEEEec--CCEEEEEeCCCcccccccc-cccceEEEEEEccCCceeccCCCceeEEEeccccc----c
Confidence            688999999999555544  3679999999999999999 99999999999999999999999999999964432    2


Q ss_pred             eeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccccc
Q 005656           84 LLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIR  163 (685)
Q Consensus        84 ~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (685)
                      .++  ..|...|.|+.|+|-...|++++-. ..-+|+.......+.                                  
T Consensus        87 ~Lk--YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~----------------------------------  129 (1081)
T KOG1538|consen   87 ILK--YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKH----------------------------------  129 (1081)
T ss_pred             eee--eccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhh----------------------------------
Confidence            233  3699999999999998899998754 356776543221100                                  


Q ss_pred             ccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccc
Q 005656          164 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDM  243 (685)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~  243 (685)
                                                          .....+.+++|..||.+++.|-.+|+|.+-|-. |+....+.  
T Consensus       130 ------------------------------------kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~--  170 (1081)
T KOG1538|consen  130 ------------------------------------KSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIE--  170 (1081)
T ss_pred             ------------------------------------hhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEe--
Confidence                                                224568899999999999999999999998643 33333332  


Q ss_pred             cccccCCCCcCEEEEEEcCCC-----CEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEE
Q 005656          244 SERSNYAHNGEVVGVACDSTN-----TLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIR  318 (685)
Q Consensus       244 ~~~~~~~h~~~v~~l~~~~~~-----~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~  318 (685)
                         ...+.+.+|.+++|+|..     ..+++..+..++.++.+.....-.....+-...|+.+.++|.++..|+.|+.+.
T Consensus       171 ---Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~  247 (1081)
T KOG1538|consen  171 ---RPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLS  247 (1081)
T ss_pred             ---CCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceE
Confidence               122678899999999864     578888888999999887654444445556678999999999999999999999


Q ss_pred             EEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005656          319 LFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI  365 (685)
Q Consensus       319 i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~  365 (685)
                      +|. +.|-.+.++......|..++..|++++++.|+.||+|-.|++.
T Consensus       248 ~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  248 LFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             EEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence            996 4566677777678899999999999999999999999999874

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=1.7e-24  Score=218.93  Aligned_cols=254  Identities=17%  Similarity=0.345  Sum_probs=221.8

Q ss_pred             EEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCe
Q 005656           17 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPL   96 (685)
Q Consensus        17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~   96 (685)
                      +++.+...-.+++||....       ..|...|.++..-..++.+++|+.|..+-+|.+...    ..+..+.+|..+|.
T Consensus         6 ~~m~~~~~t~Lr~~~~~~~-------~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp----~~i~S~~~hespIe   74 (825)
T KOG0267|consen    6 FLMKTKRATKLRVWDTREF-------VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP----NAITSLTGHESPIE   74 (825)
T ss_pred             ccceeeeeeccccccchhh-------hhhhhhhceeeeeccceeeccCCCceeeccccccCC----chhheeeccCCcce
Confidence            4445555666788886432       278888999988778899999999999999977655    45556789999999


Q ss_pred             EEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcC
Q 005656           97 CIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMD  176 (685)
Q Consensus        97 ~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (685)
                      ++.|+++...|+.|+.+|+|++||++..+..+.+.                                             
T Consensus        75 Sl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLt---------------------------------------------  109 (825)
T KOG0267|consen   75 SLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLT---------------------------------------------  109 (825)
T ss_pred             eeecCcchhhhcccccCCceeeeehhhhhhhhhhh---------------------------------------------
Confidence            99999999999999999999999998776554442                                             


Q ss_pred             CceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEE
Q 005656          177 TAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVV  256 (685)
Q Consensus       177 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~  256 (685)
                                             +|...+.++.|+|-+.|.+.|+.|+.+.+||++...+...+.        +|...|.
T Consensus       110 -----------------------gh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~--------s~~~vv~  158 (825)
T KOG0267|consen  110 -----------------------GHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK--------SHTRVVD  158 (825)
T ss_pred             -----------------------ccccCcceeeeccceEEeccccccccceehhhhccCceeeec--------CCcceeE
Confidence                                   778889999999999999999999999999999777777665        7999999


Q ss_pred             EEEEcCCCCEEEEEECCCeEEEEECCCCceEEEee-cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCC
Q 005656          257 GVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT  335 (685)
Q Consensus       257 ~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~  335 (685)
                      .+.|+|+|+++++++.|.++++||...|++...+. +.+.+..+.|+|..-+++.|+.|+++++||+++-+.+.......
T Consensus       159 ~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~  238 (825)
T KOG0267|consen  159 VLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPET  238 (825)
T ss_pred             EEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCcc
Confidence            99999999999999999999999999999999998 55899999999999999999999999999999999998888888


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCC
Q 005656          336 DRITDFCFSEDGKWLLSSGMDG  357 (685)
Q Consensus       336 ~~I~~l~~spdg~~l~s~s~Dg  357 (685)
                      ..|.+.+|+|+++.+++|..+.
T Consensus       239 ~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  239 DGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             CCceeeeecCCceeeecCchhh
Confidence            9999999999999988886553

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.91  E-value=2.4e-22  Score=194.70  Aligned_cols=286  Identities=15%  Similarity=0.217  Sum_probs=220.7

Q ss_pred             CCcEEEEeCCCCeeeEEeecccc--cCeeEEEEeCCCc-EEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEE
Q 005656           24 SGVISIWNLEKRRLQSVIREAHD--NAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRF  100 (685)
Q Consensus        24 dg~I~vwd~~~~~~~~~~~~~h~--~~V~~l~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~  100 (685)
                      ...+++||+..-.....+. .|+  -.+.++.|+.... .+++.+.|..|++|.-+...+....+....+.  .-.|++.
T Consensus        11 gd~~kl~D~s~~~~~~~~~-~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~   87 (673)
T KOG4378|consen   11 GDKTKLSDFSDLETKSEYV-HQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVAC   87 (673)
T ss_pred             CCceEEeecccccCccccc-cCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhh
Confidence            3569999998766554443 232  3489999988764 33344568899999655543333333333333  4455555


Q ss_pred             ecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceE
Q 005656          101 YANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQA  180 (685)
Q Consensus       101 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (685)
                      .....|+++||..+.|+|||++...+.+.+                                                  
T Consensus        88 ~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~l--------------------------------------------------  117 (673)
T KOG4378|consen   88 ASQSLYEISGGQSGCVKIWDLRAKLIHRFL--------------------------------------------------  117 (673)
T ss_pred             hhcceeeeccCcCceeeehhhHHHHHhhhc--------------------------------------------------
Confidence            555689999999999999999744332222                                                  


Q ss_pred             EEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEE
Q 005656          181 YVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC  260 (685)
Q Consensus       181 ~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  260 (685)
                                        ..|...|+++.++....|+++++..|.|.+..+.++.....|..       +....|+-+.+
T Consensus       118 ------------------kdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~-------~sgqsvRll~y  172 (673)
T KOG4378|consen  118 ------------------KDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI-------DSGQSVRLLRY  172 (673)
T ss_pred             ------------------cCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceec-------CCCCeEEEeec
Confidence                              27789999999999999999999999999999999988777632       33456778999


Q ss_pred             cCCCCE-EEEEECCCeEEEEECCCCceEEEee--cCCceeEEEEeecCC-EEEEEeCCCeEEEEEcCCCeeEEEEecCCC
Q 005656          261 DSTNTL-MISAGYHGDIKVWDFKGRDLKSRWE--VGCSLVKIVYHRVNG-LLATVADDLVIRLFDVVALRMVRKFEGHTD  336 (685)
Q Consensus       261 ~~~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~-~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~  336 (685)
                      ++..+. |.+++.+|.|.+||+....++..+.  |..+...++|+|.+. +|++.+.|..|.+||+...+....+. -..
T Consensus       173 s~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~  251 (673)
T KOG4378|consen  173 SPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSH  251 (673)
T ss_pred             ccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-ecC
Confidence            998764 5678899999999999887766543  458899999999776 78889999999999999888777775 456


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CceeeEEeeccc-eEEEEEcCCC
Q 005656          337 RITDFCFSEDGKWLLSSGMDGSLRIWDVIL-ARQIDAIHVDVS-ITALSLSPNM  388 (685)
Q Consensus       337 ~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~-~~~i~~~~~~~~-v~~v~~spdg  388 (685)
                      +.+.++|+++|.+|+.|+..|.|..||++. ..++.++..|.. |++++|-|..
T Consensus       252 Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  252 PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence            789999999999999999999999999985 456777766555 9999997764

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=5.6e-23  Score=212.93  Aligned_cols=214  Identities=16%  Similarity=0.297  Sum_probs=173.5

Q ss_pred             CeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEec-CCCEEEEEeCC
Q 005656           35 RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQD  113 (685)
Q Consensus        35 ~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~s~d  113 (685)
                      .+++..+. ||.+.|..+.||.++ +|+++|.|.|||+|++...    .+++.+ .|..-|+||+|+| |.+|+++|+-|
T Consensus       359 ekP~~ef~-GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~----~CL~~F-~HndfVTcVaFnPvDDryFiSGSLD  431 (712)
T KOG0283|consen  359 EKPFCEFK-GHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRK----ECLKVF-SHNDFVTCVAFNPVDDRYFISGSLD  431 (712)
T ss_pred             ccchhhhh-ccchhheecccccCC-eeEeccccccEEeecCCCc----ceeeEE-ecCCeeEEEEecccCCCcEeecccc
Confidence            35566777 999999999999865 9999999999999998876    677776 6999999999999 68999999999


Q ss_pred             CceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCce
Q 005656          114 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH  193 (685)
Q Consensus       114 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  193 (685)
                      |.||||++...+..                                                      .|.         
T Consensus       432 ~KvRiWsI~d~~Vv------------------------------------------------------~W~---------  448 (712)
T KOG0283|consen  432 GKVRLWSISDKKVV------------------------------------------------------DWN---------  448 (712)
T ss_pred             cceEEeecCcCeeE------------------------------------------------------eeh---------
Confidence            99999999655432                                                      221         


Q ss_pred             eecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccccccc-ccCCCCcCEEEEEEcCCC-CEEEEEE
Q 005656          194 ILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSER-SNYAHNGEVVGVACDSTN-TLMISAG  271 (685)
Q Consensus       194 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~~~~-~~l~s~s  271 (685)
                            ....-|++++|+|+|++.++|+-+|.+++|+....+....+.-.... ....|. .|+++.|.|.. ..+++.+
T Consensus       449 ------Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTS  521 (712)
T KOG0283|consen  449 ------DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTS  521 (712)
T ss_pred             ------hhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEec
Confidence                  33467999999999999999999999999999887765544211111 112344 89999999754 4577788


Q ss_pred             CCCeEEEEECCCCceEEEeecC---CceeEEEEeecCCEEEEEeCCCeEEEEEcCCC
Q 005656          272 YHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL  325 (685)
Q Consensus       272 ~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~  325 (685)
                      .|..|+|+|.++..++..+...   ..-....|+.||++|+++++|..|+||+....
T Consensus       522 nDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  522 NDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF  578 (712)
T ss_pred             CCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence            8999999999888888777653   44566788899999999999999999998643

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=5e-21  Score=175.36  Aligned_cols=290  Identities=15%  Similarity=0.198  Sum_probs=199.5

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCC----CeeeEEeecccccCeeEEEEeC--CCcEEEEecCCCcEEEEE
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEK----RRLQSVIREAHDNAIISLHFFA--NEPVLMSASADNSIKMWI   74 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~----~~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~s~D~~v~iWd   74 (685)
                      |++-|++++|.+.|+ .+||++.|++|+|||..+    -.+....+ .|.+.|..+.|.+  -|+.+|+++.|++++||.
T Consensus        12 h~DlihdVs~D~~GR-RmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wr-ah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   12 HKDLIHDVSFDFYGR-RMATCSSDQTVKIWDSTSDSGTWSCTSSWR-AHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             CcceeeeeeecccCc-eeeeccCCCcEEEEeccCCCCceEEeeeEE-ecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            677799999999999 999999999999999654    34566677 8999999999987  478999999999999996


Q ss_pred             ecCC-----CCCCceeEecccCCCCCeEEEEecC--CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccccc
Q 005656           75 FDTT-----DGDPRLLRFRSGHSAPPLCIRFYAN--GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEE  147 (685)
Q Consensus        75 ~~~~-----~~~~~~~~~~~~h~~~v~~i~~~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (685)
                      =...     +.......++......|+.+.|.|.  |-.+++++.||++|||+....-........+-   ...+.. ..
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~E---i~~~~~-pp  165 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHE---IQNVID-PP  165 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhh---hhhccC-Cc
Confidence            4211     1234455667778899999999996  88899999999999998765543333321110   000000 00


Q ss_pred             ccccCceeeeecccccccCCcceEEEEcCC-----ceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCC----CEEE
Q 005656          148 ELKLKPVIAFDCAEIRERDWCNVVTCHMDT-----AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG----NFAV  218 (685)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g----~~l~  218 (685)
                      .....+..+++-+  ..+.....++.+.+.     +.+.+|........-........++.+|+.++|.|+-    ..++
T Consensus       166 ~~~~~~~~CvsWn--~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lA  243 (361)
T KOG2445|consen  166 GKNKQPCFCVSWN--PSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLA  243 (361)
T ss_pred             ccccCcceEEeec--cccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEE
Confidence            0111122222222  222233344444443     5778888776655555555666899999999999963    5789


Q ss_pred             EEecCCcEEEEECCCCc------------cccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCC---
Q 005656          219 LGTAGGWIERFNLQSGI------------SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG---  283 (685)
Q Consensus       219 ~g~~dg~i~~~d~~~~~------------~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~---  283 (685)
                      +++.|| |++|++....            ....+.-........|++.|..+.|+-.|..|++.|.||.|++|...-   
T Consensus       244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~  322 (361)
T KOG2445|consen  244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNL  322 (361)
T ss_pred             EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhh
Confidence            999999 9999987421            111121112223458999999999999999999999999999997542   


Q ss_pred             CceEEEeecCCceeEE
Q 005656          284 RDLKSRWEVGCSLVKI  299 (685)
Q Consensus       284 ~~~~~~~~~~~~i~~~  299 (685)
                      .++...+.....+...
T Consensus       323 ~kC~sv~~~e~~~~~~  338 (361)
T KOG2445|consen  323 WKCTSVLKAEGSVTKP  338 (361)
T ss_pred             heeeeEEeccCCCCCc
Confidence            2344444444333333

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=2e-22  Score=193.42  Aligned_cols=234  Identities=23%  Similarity=0.287  Sum_probs=182.5

Q ss_pred             CEEEEEeCCCcEEEEeCCCCee--------------------eEEeecccccCeeEEEEeCCC-cEEEEecCCCcEEEEE
Q 005656           16 PLLASGASSGVISIWNLEKRRL--------------------QSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWI   74 (685)
Q Consensus        16 ~~latg~~dg~I~vwd~~~~~~--------------------~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~D~~v~iWd   74 (685)
                      +++|.|+.|..|.|||+.=...                    ......+|++.|.+++|+.+- +.|||||.|.+|++||
T Consensus       193 NyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD  272 (463)
T KOG0270|consen  193 NYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWD  272 (463)
T ss_pred             ceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEE
Confidence            3999999999999999862110                    000112799999999999864 4999999999999999


Q ss_pred             ecCCCCCCceeEecccCCCCCeEEEEecC-CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCc
Q 005656           75 FDTTDGDPRLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKP  153 (685)
Q Consensus        75 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (685)
                      ++++    ++..++..|...|.++.|+|. ...|++|+.|+++.+.|.+......                         
T Consensus       273 ~~~g----~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~-------------------------  323 (463)
T KOG0270|consen  273 VDTG----KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSG-------------------------  323 (463)
T ss_pred             cCCC----CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccC-------------------------
Confidence            9998    777788889999999999996 6789999999999999987421110                         


Q ss_pred             eeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccC-CCEEEEEecCCcEEEEECC
Q 005656          154 VIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC-GNFAVLGTAGGWIERFNLQ  232 (685)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~dg~i~~~d~~  232 (685)
                                                 .-|                ...+.|-.++|.|. .+.+++++.||.|+-+|++
T Consensus       324 ---------------------------~~w----------------k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R  360 (463)
T KOG0270|consen  324 ---------------------------KEW----------------KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIR  360 (463)
T ss_pred             ---------------------------ceE----------------EeccceEEEEecCCCceeEEEecCCceEEeeecC
Confidence                                       111                23567888899884 4678889999999999998


Q ss_pred             CC-ccccccccccccccCCCCcCEEEEEEcCCC-CEEEEEECCCeEEEEECCCCceEEEeecC---CceeEEEEeecCC-
Q 005656          233 SG-ISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNG-  306 (685)
Q Consensus       233 ~~-~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~~~~~~-  306 (685)
                      +. +...+..        +|.++|.++++++.. .+++|++.|+.|++|++..........+.   +...|+++.|+-. 
T Consensus       361 ~~~~~vwt~~--------AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~  432 (463)
T KOG0270|consen  361 NPGKPVWTLK--------AHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAF  432 (463)
T ss_pred             CCCCceeEEE--------eccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcce
Confidence            76 5555544        999999999998865 57889999999999999865443333322   4466777777765 


Q ss_pred             EEEEEeCCCeEEEEEcCCCeeEE
Q 005656          307 LLATVADDLVIRLFDVVALRMVR  329 (685)
Q Consensus       307 ~l~~~~~dg~I~i~d~~~~~~~~  329 (685)
                      ++|.|+..+.++|||+.+...++
T Consensus       433 ~la~GG~k~~~~vwd~~~~~~V~  455 (463)
T KOG0270|consen  433 TLAFGGEKAVLRVWDIFTNSPVR  455 (463)
T ss_pred             EEEecCccceEEEeecccChhHH
Confidence            78888888999999998876554

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.89  E-value=7.1e-22  Score=191.50  Aligned_cols=270  Identities=16%  Similarity=0.239  Sum_probs=212.1

Q ss_pred             CcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEE--eCCCceEEEEeecCceeeEechhhHHHHHhhcccc
Q 005656           68 NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSA--GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK  145 (685)
Q Consensus        68 ~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~--s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  145 (685)
                      ..+++||+.........+..-..|.  +.++.|..... |+++  +.|..+++|.-...  ..++.              
T Consensus        12 d~~kl~D~s~~~~~~~~~~~t~~pg--~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~--~~~Vp--------------   72 (673)
T KOG4378|consen   12 DKTKLSDFSDLETKSEYVHQTAEPG--DFSFNWQRRNF-LVVASMAGDKVMRIKEKDGK--TPEVP--------------   72 (673)
T ss_pred             CceEEeecccccCccccccCCCCCc--ceeeeccccce-EEEeecCCceeEEEecccCC--CCccc--------------
Confidence            4799999988766655554433333  88889987653 4444  45777888853221  11110              


Q ss_pred             ccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCc
Q 005656          146 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGW  225 (685)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~  225 (685)
                              .                                        +..  .......|++......|+++|+.+|.
T Consensus        73 --------~----------------------------------------~~k--~~gd~~~Cv~~~s~S~y~~sgG~~~~  102 (673)
T KOG4378|consen   73 --------R----------------------------------------VRK--LTGDNAFCVACASQSLYEISGGQSGC  102 (673)
T ss_pred             --------e----------------------------------------eec--cccchHHHHhhhhcceeeeccCcCce
Confidence                    0                                        000  11123445555556689999999999


Q ss_pred             EEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC--CceeEEEEee
Q 005656          226 IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--CSLVKIVYHR  303 (685)
Q Consensus       226 i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~i~~~~~~~  303 (685)
                      |.+||++.....+.+.        .|...|+++.++....+|++++..|.|.+..+.++.....+.++  ..+.-+.|+|
T Consensus       103 Vkiwdl~~kl~hr~lk--------dh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~  174 (673)
T KOG4378|consen  103 VKIWDLRAKLIHRFLK--------DHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSP  174 (673)
T ss_pred             eeehhhHHHHHhhhcc--------CCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeeccc
Confidence            9999999655555443        89999999999999999999999999999999999888887775  4566899999


Q ss_pred             cCC-EEEEEeCCCeEEEEEcCCCeeEEEE-ecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCceeeEEeeccceE
Q 005656          304 VNG-LLATVADDLVIRLFDVVALRMVRKF-EGHTDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILARQIDAIHVDVSIT  380 (685)
Q Consensus       304 ~~~-~l~~~~~dg~I~i~d~~~~~~~~~~-~~h~~~I~~l~~spdg-~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~  380 (685)
                      ..+ +|.+++++|.|.+||+....++..+ ..|..+...|+|+|.. .+|++.+.|..|.+||+.+.+....+....+..
T Consensus       175 skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Pls  254 (673)
T KOG4378|consen  175 SKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLS  254 (673)
T ss_pred             ccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcc
Confidence            877 7778899999999999988776655 5799999999999955 578899999999999999999999999999999


Q ss_pred             EEEEcCCCCeEEEEEeCCCeEEEEEcCCCcCCCCC
Q 005656          381 ALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSN  415 (685)
Q Consensus       381 ~v~~spdg~~Lat~~~d~~~I~lW~~~~~~~~~~~  415 (685)
                      +++|+++|-+|++|+..| .|+.||.|..-+|+..
T Consensus       255 tvaf~~~G~~L~aG~s~G-~~i~YD~R~~k~Pv~v  288 (673)
T KOG4378|consen  255 TVAFSECGTYLCAGNSKG-ELIAYDMRSTKAPVAV  288 (673)
T ss_pred             eeeecCCceEEEeecCCc-eEEEEecccCCCCceE
Confidence            999999999999999987 9999999988777653

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.89  E-value=2.3e-21  Score=178.60  Aligned_cols=285  Identities=18%  Similarity=0.261  Sum_probs=213.7

Q ss_pred             CeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCC---------ceeEecccCCCCCeEEEEe-------cCCCEEEEEe
Q 005656           48 AIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP---------RLLRFRSGHSAPPLCIRFY-------ANGRHILSAG  111 (685)
Q Consensus        48 ~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~---------~~~~~~~~h~~~v~~i~~~-------~~~~~l~s~s  111 (685)
                      -..++.|+|||..|++-+.|+.+++|++.......         ............|...+|.       |+..++++.+
T Consensus        51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss  130 (406)
T KOG2919|consen   51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS  130 (406)
T ss_pred             hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence            34578999999999999999999999886432110         1111112234567777887       5678999999


Q ss_pred             CCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccC
Q 005656          112 QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLG  191 (685)
Q Consensus       112 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~  191 (685)
                      .+.-|++||.-+++....+..-...                                                       
T Consensus       131 r~~PIh~wdaftG~lraSy~~ydh~-------------------------------------------------------  155 (406)
T KOG2919|consen  131 RDQPIHLWDAFTGKLRASYRAYDHQ-------------------------------------------------------  155 (406)
T ss_pred             ccCceeeeeccccccccchhhhhhH-------------------------------------------------------
Confidence            9999999999988765554311100                                                       


Q ss_pred             ceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEEC-CCCccccccccccccccCCCCcCEEEEEEcCCC-CEEEE
Q 005656          192 EHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL-QSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMIS  269 (685)
Q Consensus       192 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~-~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s  269 (685)
                              ..-....+++|+|||.+|++|.. ..|++||+ +.|.....+..... ...+..+-+.+++|+|.. ..++.
T Consensus       156 --------de~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~-~k~gq~giisc~a~sP~~~~~~a~  225 (406)
T KOG2919|consen  156 --------DEYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTK-GKFGQKGIISCFAFSPMDSKTLAV  225 (406)
T ss_pred             --------HhhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhhc-ccccccceeeeeeccCCCCcceee
Confidence                    11234678999999999999875 56999999 66655444322111 122457789999999976 48899


Q ss_pred             EECCCeEEEEECCCCceEEEeec-CCceeEEEEeecCCEEEEEeC-CCeEEEEEcCC-CeeEEEEecCCC-CeEE--EEE
Q 005656          270 AGYHGDIKVWDFKGRDLKSRWEV-GCSLVKIVYHRVNGLLATVAD-DLVIRLFDVVA-LRMVRKFEGHTD-RITD--FCF  343 (685)
Q Consensus       270 ~s~dg~i~iwd~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~-dg~I~i~d~~~-~~~~~~~~~h~~-~I~~--l~~  343 (685)
                      ++...++-||.-..+.++..+.. .+.|+.+.|+++|+.|.+|.. |-.|-.||++. +.++..+..|.+ .=..  ...
T Consensus       226 gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDl  305 (406)
T KOG2919|consen  226 GSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDL  305 (406)
T ss_pred             ecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEec
Confidence            99999999999888888877665 489999999999999999876 67899999985 466777777765 2223  345


Q ss_pred             cCCCCEEEEEeCCCcEEEEEcCC-CceeeEEeeccc-eEEEEEcCCCCeEEEEEeC
Q 005656          344 SEDGKWLLSSGMDGSLRIWDVIL-ARQIDAIHVDVS-ITALSLSPNMDVLATAHVD  397 (685)
Q Consensus       344 spdg~~l~s~s~Dg~I~iwd~~~-~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d  397 (685)
                      .|+|++|++|+.||.|++||+.+ |..+..+..++. |+.|+++|--.++||++..
T Consensus       306 d~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  306 DPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             CCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence            78999999999999999999998 776666655554 9999999999999988633

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=5.8e-22  Score=211.48  Aligned_cols=285  Identities=18%  Similarity=0.307  Sum_probs=222.4

Q ss_pred             EEEEEccCCCCEEEEEe----------CCCcEEEEeCCC--C----eeeEEeecccccCeeEEEEeCCCcE----EEEec
Q 005656            6 TALAFSSDGQPLLASGA----------SSGVISIWNLEK--R----RLQSVIREAHDNAIISLHFFANEPV----LMSAS   65 (685)
Q Consensus         6 ~~l~fspdg~~~latg~----------~dg~I~vwd~~~--~----~~~~~~~~~h~~~V~~l~~sp~~~~----l~s~s   65 (685)
                      ..++|+|++..++|+|.          .+.++.||.+.-  .    +....+.  -....+.++|.+.+..    ||.|.
T Consensus        10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~--s~~rF~kL~W~~~g~~~~GlIaGG~   87 (1049)
T KOG0307|consen   10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ--SSNRFNKLAWGSYGSHSHGLIAGGL   87 (1049)
T ss_pred             ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc--ccccceeeeecccCCCccceeeccc
Confidence            35789999977888763          355667775542  2    2333332  4557889999997764    88889


Q ss_pred             CCCcEEEEEecC--CCCCCceeEecccCCCCCeEEEEecC-CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhc
Q 005656           66 ADNSIKMWIFDT--TDGDPRLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKL  142 (685)
Q Consensus        66 ~D~~v~iWd~~~--~~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  142 (685)
                      .||.|.+|+...  .+.....+.....|.++|..+.|++. ++.|++|+.||.|.|||+...+......           
T Consensus        88 edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-----------  156 (1049)
T KOG0307|consen   88 EDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-----------  156 (1049)
T ss_pred             cCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-----------
Confidence            999999999877  34555677888899999999999997 4599999999999999986432211110           


Q ss_pred             cccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec
Q 005656          143 KMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA  222 (685)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~  222 (685)
                                                                                                      
T Consensus       157 --------------------------------------------------------------------------------  156 (1049)
T KOG0307|consen  157 --------------------------------------------------------------------------------  156 (1049)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCC-CEEEEEECCCeEEEEECCCCceEEEeecC---CceeE
Q 005656          223 GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVK  298 (685)
Q Consensus       223 dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~~i~~  298 (685)
                                               .....+.|.+++|+..- ..|++++.+|.+.|||++..+.+..+...   ..+..
T Consensus       157 -------------------------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~  211 (1049)
T KOG0307|consen  157 -------------------------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSV  211 (1049)
T ss_pred             -------------------------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceee
Confidence                                     00345678888887653 56788889999999999988777666554   34789


Q ss_pred             EEEeecCC-EEEEEeCCC---eEEEEEcCCC-eeEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCceeeE
Q 005656          299 IVYHRVNG-LLATVADDL---VIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILARQIDA  372 (685)
Q Consensus       299 ~~~~~~~~-~l~~~~~dg---~I~i~d~~~~-~~~~~~~~h~~~I~~l~~spdg-~~l~s~s~Dg~I~iwd~~~~~~i~~  372 (685)
                      +.|+|++. .++++++|.   .|.+||++.. .+++.+++|...|.++.|++.+ ++|+|++.|+.|.+|+..+|+.+..
T Consensus       212 l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~  291 (1049)
T KOG0307|consen  212 LAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGE  291 (1049)
T ss_pred             eeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeee
Confidence            99999976 566666543   7999998864 6788889999999999999955 8999999999999999999999999


Q ss_pred             Eeeccc-eEEEEEcCCCC-eEEEEEeCCCeEEEEEcCCC
Q 005656          373 IHVDVS-ITALSLSPNMD-VLATAHVDQNGVYLWVNRCM  409 (685)
Q Consensus       373 ~~~~~~-v~~v~~spdg~-~Lat~~~d~~~I~lW~~~~~  409 (685)
                      +...+. +..+.|+|... .+++++-|| .|.|++....
T Consensus       292 ~p~~~nW~fdv~w~pr~P~~~A~asfdg-kI~I~sl~~~  329 (1049)
T KOG0307|consen  292 LPAQGNWCFDVQWCPRNPSVMAAASFDG-KISIYSLQGT  329 (1049)
T ss_pred             cCCCCcceeeeeecCCCcchhhhheecc-ceeeeeeecC
Confidence            987555 99999999876 788888887 9999986543

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.89  E-value=4.9e-21  Score=181.94  Aligned_cols=297  Identities=16%  Similarity=0.225  Sum_probs=213.0

Q ss_pred             CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe---------eeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEE
Q 005656            3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRR---------LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMW   73 (685)
Q Consensus         3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~---------~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iW   73 (685)
                      .+|.++.|.+++...+|||+.|..|++|-+..+.         ....+. .|...|+++.|+|+|.+|+||+.+|.|.+|
T Consensus        14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls-~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLS-RHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeeccc-CCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            5789999999876689999999999999876422         244454 899999999999999999999999999999


Q ss_pred             EecC------C------CCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhh
Q 005656           74 IFDT------T------DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARK  141 (685)
Q Consensus        74 d~~~------~------~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  141 (685)
                      ....      .      ...+...+.+.+|...|..++|+|++.++++++.|..+++||+..+.....+.          
T Consensus        93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~----------  162 (434)
T KOG1009|consen   93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD----------  162 (434)
T ss_pred             EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc----------
Confidence            7651      0      12245567788999999999999999999999999999999999887665553          


Q ss_pred             ccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe
Q 005656          142 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT  221 (685)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~  221 (685)
                                                                                .|...+..++|.|.++++++-+
T Consensus       163 ----------------------------------------------------------dh~~yvqgvawDpl~qyv~s~s  184 (434)
T KOG1009|consen  163 ----------------------------------------------------------DHEHYVQGVAWDPLNQYVASKS  184 (434)
T ss_pred             ----------------------------------------------------------ccccccceeecchhhhhhhhhc
Confidence                                                                      6677788888888888888888


Q ss_pred             cCCcEEEEECCCCcccccccc--cccccc---------CCCC----cCEEEEEEcCCCCEEEEEE----CCCeE-----E
Q 005656          222 AGGWIERFNLQSGISRGSYLD--MSERSN---------YAHN----GEVVGVACDSTNTLMISAG----YHGDI-----K  277 (685)
Q Consensus       222 ~dg~i~~~d~~~~~~~~~~~~--~~~~~~---------~~h~----~~v~~l~~~~~~~~l~s~s----~dg~i-----~  277 (685)
                      .|...+.+.+...........  ......         .-|.    .-...++|+|+|..+++.+    .++.+     +
T Consensus       185 ~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tY  264 (434)
T KOG1009|consen  185 SDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSY  264 (434)
T ss_pred             cCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeE
Confidence            887777766654433322210  000000         0121    1245578899999888753    12222     3


Q ss_pred             EEECCC-CceEEEeecC-CceeEEEEee------------------cCCEEEEEeCCCeEEEEEcCCCeeEEEEe-cCCC
Q 005656          278 VWDFKG-RDLKSRWEVG-CSLVKIVYHR------------------VNGLLATVADDLVIRLFDVVALRMVRKFE-GHTD  336 (685)
Q Consensus       278 iwd~~~-~~~~~~~~~~-~~i~~~~~~~------------------~~~~l~~~~~dg~I~i~d~~~~~~~~~~~-~h~~  336 (685)
                      +++-.. .++...+... .+...+.++|                  -+-.+|+++. ..|+|||.++..++.... -|-.
T Consensus       265 vfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~P~~~v~nihy~  343 (434)
T KOG1009|consen  265 VFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLEPLAVVDNIHYS  343 (434)
T ss_pred             eeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEEeccccccceEEEeeeeee
Confidence            443321 1222222222 3334444443                  2234555554 589999999988877665 4888


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCce
Q 005656          337 RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ  369 (685)
Q Consensus       337 ~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~  369 (685)
                      .|++++|++||..|+..|.||...+-.+...++
T Consensus       344 ~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el  376 (434)
T KOG1009|consen  344 AITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL  376 (434)
T ss_pred             eecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence            999999999999999999999888777766554

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.88  E-value=7.1e-19  Score=187.40  Aligned_cols=327  Identities=24%  Similarity=0.476  Sum_probs=252.8

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe-eeEEeecccccCeeEEEE-eCCCc-EEEEecC-CCcEEEEEec
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDNAIISLHF-FANEP-VLMSASA-DNSIKMWIFD   76 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~-~~~~~~~~h~~~V~~l~~-sp~~~-~l~s~s~-D~~v~iWd~~   76 (685)
                      |...|.++.|.+.+. .++.++.|+.+.+|+...+. ....+...+...+..+.+ ++++. .++..+. |+.+.+|++.
T Consensus        64 ~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  142 (466)
T COG2319          64 HEDSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLS  142 (466)
T ss_pred             ccceEEEEEECCCCc-EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEec
Confidence            567899999999998 88888899999999999887 666666223347888888 78887 5555444 9999999988


Q ss_pred             C-CCCCCceeEecccCCCCCeEEEEecCCCEEEEEeC-CCceEEEEeecCceeeEechhhHHHHHhhccccccccccCce
Q 005656           77 T-TDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ-DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV  154 (685)
Q Consensus        77 ~-~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (685)
                      . .    ........|...|..+.|+|++.++++++. |+.+++|++........+.                       
T Consensus       143 ~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------  195 (466)
T COG2319         143 TPG----KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA-----------------------  195 (466)
T ss_pred             CCC----eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeec-----------------------
Confidence            6 3    566777899999999999999998888886 9999999997644333331                       


Q ss_pred             eeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEE-EEEecCCcEEEEECCC
Q 005656          155 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFA-VLGTAGGWIERFNLQS  233 (685)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~g~~dg~i~~~d~~~  233 (685)
                                                                   .+...+.+++++|++..+ +.++.++.|.+||...
T Consensus       196 ---------------------------------------------~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~  230 (466)
T COG2319         196 ---------------------------------------------GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST  230 (466)
T ss_pred             ---------------------------------------------cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCC
Confidence                                                         467889999999999844 4449999999998886


Q ss_pred             Ccccc-ccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCce-EEEe-ecCCceeEEEEeecCCEEEE
Q 005656          234 GISRG-SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDL-KSRW-EVGCSLVKIVYHRVNGLLAT  310 (685)
Q Consensus       234 ~~~~~-~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~-~~~~~i~~~~~~~~~~~l~~  310 (685)
                      +.... .+.        .|...+ ...|++++..+++++.|+.+++|+...... ...+ .+...+.++.|+|++..+++
T Consensus       231 ~~~~~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  301 (466)
T COG2319         231 GKLLRSTLS--------GHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLAS  301 (466)
T ss_pred             CcEEeeecC--------CCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEE
Confidence            66655 232        677665 448999998889999999999999986654 3333 34588999999998888888


Q ss_pred             EeCCCeEEEEEcCCCeeEEEEe--cCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCceeeEEeeccceEEEEEcCC
Q 005656          311 VADDLVIRLFDVVALRMVRKFE--GHTDRITDFCFSEDGKWLLSS-GMDGSLRIWDVILARQIDAIHVDVSITALSLSPN  387 (685)
Q Consensus       311 ~~~dg~I~i~d~~~~~~~~~~~--~h~~~I~~l~~spdg~~l~s~-s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spd  387 (685)
                      ++.|+.+.+||..+........  .|...+..+.|.+++..++.+ ..|+.+++|++..............+..+.+++ 
T Consensus       302 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  380 (466)
T COG2319         302 GSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-  380 (466)
T ss_pred             eeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEEECC-
Confidence            9889999999999887777766  888889999994343566655 688999999999887333333444489999999 


Q ss_pred             CCeEEE-EEeCCCeEEEEEcCCCcC
Q 005656          388 MDVLAT-AHVDQNGVYLWVNRCMFS  411 (685)
Q Consensus       388 g~~Lat-~~~d~~~I~lW~~~~~~~  411 (685)
                      ...... +..++ .+.+|+......
T Consensus       381 ~~~~~~~~~~~~-~~~~~~~~~~~~  404 (466)
T COG2319         381 DGRVVSSGSTDG-TVRLWDLSTGSL  404 (466)
T ss_pred             CCCEEEEecCCC-ceEEEecccCee
Confidence            644444 35554 999998665443

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.88  E-value=2.5e-21  Score=193.53  Aligned_cols=297  Identities=15%  Similarity=0.224  Sum_probs=207.5

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEE--eecccccCeeEEEEeCCCc-EEEEecCCCcEEEEEecC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSV--IREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDT   77 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~--~~~~h~~~V~~l~~sp~~~-~l~s~s~D~~v~iWd~~~   77 (685)
                      |.+.|..+.|-| |+..|++++.|.+|++||+++.++...  +. ||.+.|.+++|.|..+ .+++|+.||.|.|||+..
T Consensus        99 H~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~-GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~  176 (720)
T KOG0321|consen   99 HKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNL-GHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRC  176 (720)
T ss_pred             ccceeEeeccCC-CceeEEEccCCceeeeeeeccceeecceeec-ccccccchhhhccCCCcceeeccCCCcEEEEEEec
Confidence            788999999999 766999999999999999999998776  66 9999999999999665 889999999999999854


Q ss_pred             CCC-----------------------CCceeEecccCCCCCeE---EEEecCCCEEEEEeC-CCceEEEEeecCceeeEe
Q 005656           78 TDG-----------------------DPRLLRFRSGHSAPPLC---IRFYANGRHILSAGQ-DRAFRLFSVIQDQQSREL  130 (685)
Q Consensus        78 ~~~-----------------------~~~~~~~~~~h~~~v~~---i~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~  130 (685)
                      ...                       ..+..+....|...|.+   +.+..|...|+++|. |+.|+|||++........
T Consensus       177 n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~  256 (720)
T KOG0321|consen  177 NGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQ  256 (720)
T ss_pred             cchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccccccc
Confidence            320                       00112223345556666   667778889999988 999999999887654433


Q ss_pred             chhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEE
Q 005656          131 SQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTI  210 (685)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~  210 (685)
                      .....                                                         ............+.++..
T Consensus       257 ep~~~---------------------------------------------------------~~~~t~skrs~G~~nL~l  279 (720)
T KOG0321|consen  257 EPRGS---------------------------------------------------------DKYPTHSKRSVGQVNLIL  279 (720)
T ss_pred             CCCcc---------------------------------------------------------cCccCcccceeeeEEEEe
Confidence            21000                                                         000000022345788888


Q ss_pred             ccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCc--CEEEEEEcCCCCEEEEEECCCeEEEEECCCCceE-
Q 005656          211 SACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNG--EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLK-  287 (685)
Q Consensus       211 s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-  287 (685)
                      ...|.++++.+.|+.|+.||+.+........      ..++..  .-..-..+|++.++++|+.|...++|.+.+.+.- 
T Consensus       280 DssGt~L~AsCtD~sIy~ynm~s~s~sP~~~------~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~  353 (720)
T KOG0321|consen  280 DSSGTYLFASCTDNSIYFYNMRSLSISPVAE------FSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPP  353 (720)
T ss_pred             cCCCCeEEEEecCCcEEEEeccccCcCchhh------ccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCCh
Confidence            9999999999999999999998765443321      002211  1112245899999999999999999999875432 


Q ss_pred             -EEeecCCceeEEEEeecCC-EEEEEeCCCeEEEEEcCCC--------------eeEEEEecCCCCeEEEEEcCCCCEEE
Q 005656          288 -SRWEVGCSLVKIVYHRVNG-LLATVADDLVIRLFDVVAL--------------RMVRKFEGHTDRITDFCFSEDGKWLL  351 (685)
Q Consensus       288 -~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~I~i~d~~~~--------------~~~~~~~~h~~~I~~l~~spdg~~l~  351 (685)
                       ....+...+++++|.|... -++++++|..++||++..+              ...+.|++|.-.+..+.++-.+.+..
T Consensus       354 ~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss~~~t~~~  433 (720)
T KOG0321|consen  354 ALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEEIYAADKDSIVYEYSRRFKGHLPQVLNVNSSLRKTYKD  433 (720)
T ss_pred             hhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchhhccccccchhhhhhhhhhhccccccccccccccccccc
Confidence             2223346789999988654 5677799999999998654              22345566666666665554433322


Q ss_pred             EEeCCCcEEEEEc
Q 005656          352 SSGMDGSLRIWDV  364 (685)
Q Consensus       352 s~s~Dg~I~iwd~  364 (685)
                      ..  .+..++|..
T Consensus       434 pR--~~~~r~~ss  444 (720)
T KOG0321|consen  434 PR--EGMNRISSS  444 (720)
T ss_pred             hh--hhccccccC
Confidence            22  344555543

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.88  E-value=8.1e-21  Score=175.01  Aligned_cols=276  Identities=16%  Similarity=0.204  Sum_probs=206.2

Q ss_pred             EEEEEccCCCCEEEEEeCCCcEEEEeCCCC------------eeeEEeecccccCeeEEEEe-------CCCcEEEEecC
Q 005656            6 TALAFSSDGQPLLASGASSGVISIWNLEKR------------RLQSVIREAHDNAIISLHFF-------ANEPVLMSASA   66 (685)
Q Consensus         6 ~~l~fspdg~~~latg~~dg~I~vwd~~~~------------~~~~~~~~~h~~~V~~l~~s-------p~~~~l~s~s~   66 (685)
                      ..+.|||||. .|.+-+.|..+.+|++...            +....++......|...+|-       |+..++++.+.
T Consensus        53 kgckWSPDGS-ciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr  131 (406)
T KOG2919|consen   53 KGCKWSPDGS-CILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR  131 (406)
T ss_pred             ccceeCCCCc-eEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence            3578999999 8888889999999997531            11223332345678888886       56779999999


Q ss_pred             CCcEEEEEecCCCCCCceeEecc--cCCC---CCeEEEEecCCCEEEEEeCCCceEEEEee-cCceeeEechhhHHHHHh
Q 005656           67 DNSIKMWIFDTTDGDPRLLRFRS--GHSA---PPLCIRFYANGRHILSAGQDRAFRLFSVI-QDQQSRELSQRHVAKRAR  140 (685)
Q Consensus        67 D~~v~iWd~~~~~~~~~~~~~~~--~h~~---~v~~i~~~~~~~~l~s~s~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~  140 (685)
                      |.-|++||.-++.    +.....  .|..   ...+++|+|||.+|+.| ..+.|++||+. .+.........       
T Consensus       132 ~~PIh~wdaftG~----lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~-------  199 (406)
T KOG2919|consen  132 DQPIHLWDAFTGK----LRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTV-------  199 (406)
T ss_pred             cCceeeeeccccc----cccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhh-------
Confidence            9999999988773    222222  2333   44689999999998765 57789999993 33322211100       


Q ss_pred             hccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCC-CEEEE
Q 005656          141 KLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVL  219 (685)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~  219 (685)
                                                                            .....+..+.+.+++++|-. ..+++
T Consensus       200 ------------------------------------------------------~~~k~gq~giisc~a~sP~~~~~~a~  225 (406)
T KOG2919|consen  200 ------------------------------------------------------TKGKFGQKGIISCFAFSPMDSKTLAV  225 (406)
T ss_pred             ------------------------------------------------------hcccccccceeeeeeccCCCCcceee
Confidence                                                                  00011446778999999954 58999


Q ss_pred             EecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE-CCCeEEEEECCC-CceEEEeecC----
Q 005656          220 GTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKG-RDLKSRWEVG----  293 (685)
Q Consensus       220 g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~-~~~~~~~~~~----  293 (685)
                      |+...++-+|+-..+.....+.        +|.+.|+.+.|.++|+.|++|+ .|..|..||++. +.++..+..+    
T Consensus       226 gsY~q~~giy~~~~~~pl~llg--------gh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~T  297 (406)
T KOG2919|consen  226 GSYGQRVGIYNDDGRRPLQLLG--------GHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDT  297 (406)
T ss_pred             ecccceeeeEecCCCCceeeec--------ccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCc
Confidence            9999999999988887776654        9999999999999999999998 578899999985 3444444332    


Q ss_pred             CceeEEEEeecCCEEEEEeCCCeEEEEEcCC-CeeEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q 005656          294 CSLVKIVYHRVNGLLATVADDLVIRLFDVVA-LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD  356 (685)
Q Consensus       294 ~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~-~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~D  356 (685)
                      ..-.-+...|++++|++|+.||.|++||+++ +..+..+..|...++.++++|--.++++++..
T Consensus       298 NQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  298 NQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             cceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence            1223355568899999999999999999998 77788888899999999999998888888754

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=1.8e-21  Score=198.79  Aligned_cols=201  Identities=19%  Similarity=0.337  Sum_probs=166.1

Q ss_pred             EEEEEcc-CCCEEEEEecCCcEEEEECCC---CccccccccccccccCCCCcCEEEEEEcCCC-CEEEEEECCCeEEEEE
Q 005656          206 KACTISA-CGNFAVLGTAGGWIERFNLQS---GISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWD  280 (685)
Q Consensus       206 ~~~~~s~-~g~~l~~g~~dg~i~~~d~~~---~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd  280 (685)
                      ..+.|+. +.+++++++.+|.|.+||+..   ......|.        .|...+.++.|++.. .+|++||.||+|++||
T Consensus        91 ~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~--------EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~D  162 (839)
T KOG0269|consen   91 ADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFN--------EHERSANKLDFHSTEPNILISGSQDGTVKCWD  162 (839)
T ss_pred             hhcccccchhhhheeecCCCcEEEEecCccccchhhhHhh--------hhccceeeeeeccCCccEEEecCCCceEEEEe
Confidence            3445553 568999999999999999987   33333333        899999999999864 6889999999999999


Q ss_pred             CCCCceEEEeecC-CceeEEEEeec-CCEEEEEeCCCeEEEEEcCCC-eeEEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q 005656          281 FKGRDLKSRWEVG-CSLVKIVYHRV-NGLLATVADDLVIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG  357 (685)
Q Consensus       281 ~~~~~~~~~~~~~-~~i~~~~~~~~-~~~l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg  357 (685)
                      ++..+-..++... ..|..+.|+|. +..++++.+.|.+.+||++.. ++...+.+|.++|.++.|+|++.||||||.|+
T Consensus       163 lR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK  242 (839)
T KOG0269|consen  163 LRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDK  242 (839)
T ss_pred             eecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCc
Confidence            9988777766654 78999999996 458999999999999999865 67788899999999999999999999999999


Q ss_pred             cEEEEEcCCCc--eeeEEeeccceEEEEEcCCCCeEE-EEE-eCCCeEEEEEcCCCcCCCC
Q 005656          358 SLRIWDVILAR--QIDAIHVDVSITALSLSPNMDVLA-TAH-VDQNGVYLWVNRCMFSGDS  414 (685)
Q Consensus       358 ~I~iwd~~~~~--~i~~~~~~~~v~~v~~spdg~~La-t~~-~d~~~I~lW~~~~~~~~~~  414 (685)
                      .|+|||+.+++  .+.++..-.+|.+|.|-|+..+.+ +++ .++-.|+||+.+..|-|..
T Consensus       243 ~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~  303 (839)
T KOG0269|consen  243 MVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYA  303 (839)
T ss_pred             cEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccce
Confidence            99999998654  456677778899999999887644 433 2234899999999997754

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=3.3e-20  Score=178.32  Aligned_cols=240  Identities=16%  Similarity=0.316  Sum_probs=178.9

Q ss_pred             eeEEEEeC-------CCcEEEEecCCCcEEEEEecCCCCCCceeE-----------------ecccCCCCCeEEEEecC-
Q 005656           49 IISLHFFA-------NEPVLMSASADNSIKMWIFDTTDGDPRLLR-----------------FRSGHSAPPLCIRFYAN-  103 (685)
Q Consensus        49 V~~l~~sp-------~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~-----------------~~~~h~~~v~~i~~~~~-  103 (685)
                      -.|++|..       -|+++|.|+.|..|.|||++-.+....++.                 .-.+|+..|.++.|+.+ 
T Consensus       176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~  255 (463)
T KOG0270|consen  176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF  255 (463)
T ss_pred             chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence            35667654       256999999999999999976543211111                 12367888888888765 


Q ss_pred             CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEE
Q 005656          104 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW  183 (685)
Q Consensus       104 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  183 (685)
                      .+.|+|||.|.+|++||+.++++...+                                                     
T Consensus       256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~-----------------------------------------------------  282 (463)
T KOG0270|consen  256 RNVLASGSADKTVKLWDVDTGKPKSSI-----------------------------------------------------  282 (463)
T ss_pred             ceeEEecCCCceEEEEEcCCCCcceeh-----------------------------------------------------
Confidence            456778888888888887766543332                                                     


Q ss_pred             EcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCC
Q 005656          184 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST  263 (685)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  263 (685)
                                                                               .        .|.+.|.++.|+|.
T Consensus       283 ---------------------------------------------------------~--------~~~k~Vq~l~wh~~  297 (463)
T KOG0270|consen  283 ---------------------------------------------------------T--------HHGKKVQTLEWHPY  297 (463)
T ss_pred             ---------------------------------------------------------h--------hcCCceeEEEecCC
Confidence                                                                     1        67888999999886


Q ss_pred             -CCEEEEEECCCeEEEEECCC-CceEEEeecCCceeEEEEeecCC-EEEEEeCCCeEEEEEcCCC-eeEEEEecCCCCeE
Q 005656          264 -NTLMISAGYHGDIKVWDFKG-RDLKSRWEVGCSLVKIVYHRVNG-LLATVADDLVIRLFDVVAL-RMVRKFEGHTDRIT  339 (685)
Q Consensus       264 -~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~I~  339 (685)
                       ..++++|+.|++|.+.|.+. ...-..+...+.|..++|.|... .++++..||+++-+|++.. +++.++..|.+.|.
T Consensus       298 ~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~IS  377 (463)
T KOG0270|consen  298 EPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEIS  377 (463)
T ss_pred             CceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcc
Confidence             47899999999999999983 34445666778999999999876 7778889999999999875 99999999999999


Q ss_pred             EEEEcCCC-CEEEEEeCCCcEEEEEcCCCceeeEEee--cc-ceEEEEEcCCCCe-EEEEEeCCCeEEEEEcC
Q 005656          340 DFCFSEDG-KWLLSSGMDGSLRIWDVILARQIDAIHV--DV-SITALSLSPNMDV-LATAHVDQNGVYLWVNR  407 (685)
Q Consensus       340 ~l~~spdg-~~l~s~s~Dg~I~iwd~~~~~~i~~~~~--~~-~v~~v~~spdg~~-Lat~~~d~~~I~lW~~~  407 (685)
                      ++++++.- .++++++.|+.|++|++.....-....+  .- ...|+++.|+-.+ ||.|+..+ .++||+..
T Consensus       378 gl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~-~~~vwd~~  449 (463)
T KOG0270|consen  378 GLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKA-VLRVWDIF  449 (463)
T ss_pred             eEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccc-eEEEeecc
Confidence            99998854 4788999999999999875443222211  11 1667788887654 55555554 89999854

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.87  E-value=2.2e-20  Score=175.71  Aligned_cols=199  Identities=18%  Similarity=0.247  Sum_probs=157.6

Q ss_pred             CCCCCeEEEEEccCC-CEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCC-CEEEEEECCCeEE
Q 005656          200 ENPTAVKACTISACG-NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIK  277 (685)
Q Consensus       200 ~~~~~v~~~~~s~~g-~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~  277 (685)
                      +|...-..++|||-. ..+++|..-+.|++|...+|.....-.     ...+|+..|-.++|+|.. ..|++||.||+|+
T Consensus       209 ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~-----Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIr  283 (440)
T KOG0302|consen  209 GHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQR-----PFTGHTKSVEDLQWSPTEDGVFASCSCDGSIR  283 (440)
T ss_pred             ccCccceeeecccccccccccCccccceEeeeeccCceeecCc-----cccccccchhhhccCCccCceEEeeecCceEE
Confidence            667778899999933 347788888899999998876543221     334899999999999975 6889999999999


Q ss_pred             EEECCCC---ceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCC---CeeEEEEecCCCCeEEEEEcCC-CCEE
Q 005656          278 VWDFKGR---DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA---LRMVRKFEGHTDRITDFCFSED-GKWL  350 (685)
Q Consensus       278 iwd~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~---~~~~~~~~~h~~~I~~l~~spd-g~~l  350 (685)
                      |||++.+   ..+.+-.+.+.|+.+.|+.+-.+||+|++||+++|||+++   ++++..|+-|..+|+++.|+|. ...|
T Consensus       284 IWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~i  363 (440)
T KOG0302|consen  284 IWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVI  363 (440)
T ss_pred             EEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceE
Confidence            9999987   4555566778999999999888999999999999999975   5789999999999999999994 4578


Q ss_pred             EEEeCCCcEEEEEcCCCc-------------------eeeEEeeccceEEEEEcCCC-CeEEEEEeCCCeEEEEE
Q 005656          351 LSSGMDGSLRIWDVILAR-------------------QIDAIHVDVSITALSLSPNM-DVLATAHVDQNGVYLWV  405 (685)
Q Consensus       351 ~s~s~Dg~I~iwd~~~~~-------------------~i~~~~~~~~v~~v~~spdg-~~Lat~~~d~~~I~lW~  405 (685)
                      ++++.|.+|.+||+..-.                   ++..-.+...+..+.|++.- .+|++++.|  ++.||.
T Consensus       364 aasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~d--GfnVfk  436 (440)
T KOG0302|consen  364 AASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAID--GFNVFK  436 (440)
T ss_pred             EeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEeccc--ceeEEE
Confidence            888899999999985321                   11111233448899999975 466777667  466663

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.87  E-value=1.3e-20  Score=177.25  Aligned_cols=244  Identities=18%  Similarity=0.322  Sum_probs=185.1

Q ss_pred             CCCcEEEEEEccCCC-CEEEEEeCCCcEEEEeCCC----------------CeeeEEeecccccCeeEEEEeCCCc-EEE
Q 005656            1 MRGAVTALAFSSDGQ-PLLASGASSGVISIWNLEK----------------RRLQSVIREAHDNAIISLHFFANEP-VLM   62 (685)
Q Consensus         1 h~~~V~~l~fspdg~-~~latg~~dg~I~vwd~~~----------------~~~~~~~~~~h~~~V~~l~~sp~~~-~l~   62 (685)
                      |.|.|+.+.-++-|+ .+.|+=+..|.|.|||+..                .+.+.++. +|.+.=+.++|||-.. .|+
T Consensus       150 h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~-ghk~EGy~LdWSp~~~g~Ll  228 (440)
T KOG0302|consen  150 HYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFN-GHKGEGYGLDWSPIKTGRLL  228 (440)
T ss_pred             cccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEec-ccCccceeeecccccccccc
Confidence            677888888887764 3666667899999999752                34566666 8999999999999432 688


Q ss_pred             EecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecC-CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhh
Q 005656           63 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARK  141 (685)
Q Consensus        63 s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  141 (685)
                      ||..-+.|++|...++.-... ...+.+|...|-.++|+|. ...|+|||.||+|+|||++.+.....+           
T Consensus       229 sGDc~~~I~lw~~~~g~W~vd-~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~-----------  296 (440)
T KOG0302|consen  229 SGDCVKGIHLWEPSTGSWKVD-QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV-----------  296 (440)
T ss_pred             cCccccceEeeeeccCceeec-CccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcccee-----------
Confidence            888888999998877543222 2334579999999999996 568899999999999999766321111           


Q ss_pred             ccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe
Q 005656          142 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT  221 (685)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~  221 (685)
                                                                                                      
T Consensus       297 --------------------------------------------------------------------------------  296 (440)
T KOG0302|consen  297 --------------------------------------------------------------------------------  296 (440)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCC---CceEEEeecC-Ccee
Q 005656          222 AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG---RDLKSRWEVG-CSLV  297 (685)
Q Consensus       222 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~---~~~~~~~~~~-~~i~  297 (685)
                                               ...+|.+.|+.|.|+..-.+|++|+.||+++|||++.   ++++..+..+ .+|+
T Consensus       297 -------------------------~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pIt  351 (440)
T KOG0302|consen  297 -------------------------STKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPIT  351 (440)
T ss_pred             -------------------------EeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCee
Confidence                                     0018999999999998888999999999999999984   5667777765 9999


Q ss_pred             EEEEeecCC-EEEEEeCCCeEEEEEcCCCee----------------EEEEecCC--CCeEEEEEcCCC-CEEEEEeCCC
Q 005656          298 KIVYHRVNG-LLATVADDLVIRLFDVVALRM----------------VRKFEGHT--DRITDFCFSEDG-KWLLSSGMDG  357 (685)
Q Consensus       298 ~~~~~~~~~-~l~~~~~dg~I~i~d~~~~~~----------------~~~~~~h~--~~I~~l~~spdg-~~l~s~s~Dg  357 (685)
                      ++.|+|... .+++++.|..|.|||+..-.-                .+-+--|.  ..|..+.|++.- .+|++.+.||
T Consensus       352 sieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG  431 (440)
T KOG0302|consen  352 SIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG  431 (440)
T ss_pred             EEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence            999999754 888999999999999853110                11122243  358889999854 4888888898


Q ss_pred             cEEEEE
Q 005656          358 SLRIWD  363 (685)
Q Consensus       358 ~I~iwd  363 (685)
                       +.||-
T Consensus       432 -fnVfk  436 (440)
T KOG0302|consen  432 -FNVFK  436 (440)
T ss_pred             -eeEEE
Confidence             66664

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.87  E-value=1.9e-21  Score=174.38  Aligned_cols=299  Identities=19%  Similarity=0.285  Sum_probs=211.2

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG   80 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~   80 (685)
                      |.+.|+|+.|..+++  |.+|...|.|.+|++.+.+....++..|...|+.+.-.|+ ..|.+-+.|+.+.+|++...  
T Consensus        13 ~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s--   87 (323)
T KOG0322|consen   13 HSSSVTSVLFQANER--LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYS--   87 (323)
T ss_pred             ccchheehhhccchh--hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCc--
Confidence            678899999999876  7899999999999999999888887678889999999997 57888899999999998764  


Q ss_pred             CCceeEecccCCCCCeEEEEecCCCEEEEEeCCC-ceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeec
Q 005656           81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR-AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC  159 (685)
Q Consensus        81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (685)
                        ..+   .-|+-.++++.|.+..  +...+... .+-.++-+.........                 ..         
T Consensus        88 --~~i---~i~Si~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde~h~~D-----------------~g---------  134 (323)
T KOG0322|consen   88 --AFI---SIHSIVVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDETHKQD-----------------GG---------  134 (323)
T ss_pred             --ceE---EEeeeeccccccccce--eccCCCcchhheecCCcccchhhhhc-----------------cC---------
Confidence              222   2355667777776531  22222111 11111110000000000                 00         


Q ss_pred             ccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEc-cCCC--EEEEEecCCcEEEEECCCCcc
Q 005656          160 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS-ACGN--FAVLGTAGGWIERFNLQSGIS  236 (685)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~--~l~~g~~dg~i~~~d~~~~~~  236 (685)
                                      +...+.+-+           .+.....+.+.|..+. .++.  ++++|+.+|.+.+||+.++..
T Consensus       135 ----------------~~tqv~i~d-----------d~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~  187 (323)
T KOG0322|consen  135 ----------------DTTQVQIAD-----------DSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDK  187 (323)
T ss_pred             ----------------ccceeEccC-----------chhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCce
Confidence                            000000000           0001234455555533 2443  468899999999999999865


Q ss_pred             cccccccc--ccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCC--ceE--EEeec-CCceeEEEEeecCCEEE
Q 005656          237 RGSYLDMS--ERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR--DLK--SRWEV-GCSLVKIVYHRVNGLLA  309 (685)
Q Consensus       237 ~~~~~~~~--~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~--~~~--~~~~~-~~~i~~~~~~~~~~~l~  309 (685)
                      ...++...  ......|..+|.++.+.+.-..=++|+.+..+..|++...  .+.  ..+.. +..+..+.+-||++.+|
T Consensus       188 ~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlA  267 (323)
T KOG0322|consen  188 IIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILA  267 (323)
T ss_pred             eeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEe
Confidence            55544322  1223379999999999987767788888889999988743  221  12222 35788899999999999


Q ss_pred             EEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005656          310 TVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV  364 (685)
Q Consensus       310 ~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~  364 (685)
                      +++.|+.||||..++.+++..++-|.+.|++++|+||...+|++|.|++|.+|++
T Consensus       268 TAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  268 TAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             ecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            9999999999999999999999999999999999999999999999999999986

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.87  E-value=3.1e-18  Score=182.50  Aligned_cols=320  Identities=27%  Similarity=0.484  Sum_probs=248.8

Q ss_pred             cEEEEEE-ccCCCCEEEE-EeCCCcEEEEeCCC-CeeeEEeecccccCeeEEEEeCCCcEEEEecC-CCcEEEEEecCCC
Q 005656            4 AVTALAF-SSDGQPLLAS-GASSGVISIWNLEK-RRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTD   79 (685)
Q Consensus         4 ~V~~l~f-spdg~~~lat-g~~dg~I~vwd~~~-~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~-D~~v~iWd~~~~~   79 (685)
                      .+..+.+ ++++..+++. +..|+.+.+|+... ......+. .|...|..++|+|++..+++++. |+.+++|+.... 
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  188 (466)
T COG2319         111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLE-GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG-  188 (466)
T ss_pred             ceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEe-cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC-
Confidence            4666677 7777634444 34499999999998 77777777 89999999999999999998886 999999998874 


Q ss_pred             CCCceeEecccCCCCCeEEEEecCCC-EEEEEeCCCceEEEEeecCceeeE-echhhHHHHHhhccccccccccCceeee
Q 005656           80 GDPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQDRAFRLFSVIQDQQSRE-LSQRHVAKRARKLKMKEEELKLKPVIAF  157 (685)
Q Consensus        80 ~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (685)
                         ..+..+.+|...|.+++|+|++. .+++++.|+.+++||...+..... +.                          
T Consensus       189 ---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~--------------------------  239 (466)
T COG2319         189 ---KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS--------------------------  239 (466)
T ss_pred             ---ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecC--------------------------
Confidence               66777778999999999999987 555559999999997764333221 11                          


Q ss_pred             ecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcc-
Q 005656          158 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS-  236 (685)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~-  236 (685)
                                                                .+.... ...|++++.++++++.++.+++|++..... 
T Consensus       240 ------------------------------------------~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  276 (466)
T COG2319         240 ------------------------------------------GHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSL  276 (466)
T ss_pred             ------------------------------------------CCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcE
Confidence                                                      333333 228999998999999999999999987765 


Q ss_pred             ccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEee--cC-CceeEEEEeecCCEEEEE-e
Q 005656          237 RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE--VG-CSLVKIVYHRVNGLLATV-A  312 (685)
Q Consensus       237 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~-~~i~~~~~~~~~~~l~~~-~  312 (685)
                      ...+        ..|...+.++.|+|++..+++++.|+.+.+||..+........  .+ ..+..+.+.+++..++.+ .
T Consensus       277 ~~~~--------~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (466)
T COG2319         277 LRTL--------SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGS  348 (466)
T ss_pred             EEEE--------ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeec
Confidence            2222        2789999999999988888889889999999998887666554  33 458888883332555555 6


Q ss_pred             CCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEE-EeCCCcEEEEEcCCCceeeEEeec-cceEEEEEcCCCCe
Q 005656          313 DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLS-SGMDGSLRIWDVILARQIDAIHVD-VSITALSLSPNMDV  390 (685)
Q Consensus       313 ~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s-~s~Dg~I~iwd~~~~~~i~~~~~~-~~v~~v~~spdg~~  390 (685)
                      .|+.+.+|++...........+. .+..+.+++ ...++. +..++.+.+|+............. ..+....+++++..
T Consensus       349 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (466)
T COG2319         349 DDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKS  426 (466)
T ss_pred             CCCcEEeeecCCCceeEEecCCc-eEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcE
Confidence            78999999999887333333232 288999998 544444 688999999999998888877776 78999999999999


Q ss_pred             EEEEEeCCCeEEEEEcCC
Q 005656          391 LATAHVDQNGVYLWVNRC  408 (685)
Q Consensus       391 Lat~~~d~~~I~lW~~~~  408 (685)
                      ++.++.+. .+++|+...
T Consensus       427 ~~~~~~~~-~~~~~~~~~  443 (466)
T COG2319         427 LASGSSDN-TIRLWDLKT  443 (466)
T ss_pred             EEEecCCC-cEEEEeccC
Confidence            99977675 999998655

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.87  E-value=2.5e-20  Score=177.16  Aligned_cols=293  Identities=17%  Similarity=0.209  Sum_probs=212.1

Q ss_pred             cccCeeEEEEeCCCc-EEEEecCCCcEEEEEecCCCC-----CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEE
Q 005656           45 HDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDG-----DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL  118 (685)
Q Consensus        45 h~~~V~~l~~sp~~~-~l~s~s~D~~v~iWd~~~~~~-----~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~v  118 (685)
                      ...+|.++.|.+++. .|+||+.|..|++|.+.....     ....+..+..|...|+++.|+|+|..|+||+.+|.+.+
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l   91 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL   91 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence            346899999999877 999999999999999876543     23456778899999999999999999999999999999


Q ss_pred             EEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCC
Q 005656          119 FSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC  198 (685)
Q Consensus       119 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  198 (685)
                      |....-...   ....                        ........                |         ...+..
T Consensus        92 Wk~~~~~~~---~~d~------------------------e~~~~ke~----------------w---------~v~k~l  119 (434)
T KOG1009|consen   92 WKQGDVRIF---DADT------------------------EADLNKEK----------------W---------VVKKVL  119 (434)
T ss_pred             EEecCcCCc---cccc------------------------hhhhCccc----------------e---------EEEEEe
Confidence            976431100   0000                        00000000                0         111222


Q ss_pred             CCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEE
Q 005656          199 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV  278 (685)
Q Consensus       199 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~i  278 (685)
                      .+|...+..++|+|+++++++|+.|..+++||+..|.....+.        .|...|..++|+|.++++++-+.|...+.
T Consensus       120 r~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~--------dh~~yvqgvawDpl~qyv~s~s~dr~~~~  191 (434)
T KOG1009|consen  120 RGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD--------DHEHYVQGVAWDPLNQYVASKSSDRHPEG  191 (434)
T ss_pred             cccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc--------ccccccceeecchhhhhhhhhccCcccce
Confidence            3688899999999999999999999999999999999887765        89999999999999999999999987777


Q ss_pred             EECCCCceEEEee--------------------c----CCceeEEEEeecCCEEEEEeC----CC-----eEEEEEcCC-
Q 005656          279 WDFKGRDLKSRWE--------------------V----GCSLVKIVYHRVNGLLATVAD----DL-----VIRLFDVVA-  324 (685)
Q Consensus       279 wd~~~~~~~~~~~--------------------~----~~~i~~~~~~~~~~~l~~~~~----dg-----~I~i~d~~~-  324 (685)
                      +.+...+......                    +    ..-...++|+|+|.++++...    ++     ..++|+-.. 
T Consensus       192 ~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l  271 (434)
T KOG1009|consen  192 FSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDL  271 (434)
T ss_pred             eeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccc
Confidence            7766543332221                    0    022456789999999887643    22     234554332 


Q ss_pred             CeeEEEEecCCCCeEEEEEcC------------------CCCEEEEEeCCCcEEEEEcCCCceeeEEe--eccceEEEEE
Q 005656          325 LRMVRKFEGHTDRITDFCFSE------------------DGKWLLSSGMDGSLRIWDVILARQIDAIH--VDVSITALSL  384 (685)
Q Consensus       325 ~~~~~~~~~h~~~I~~l~~sp------------------dg~~l~s~s~Dg~I~iwd~~~~~~i~~~~--~~~~v~~v~~  384 (685)
                      .++...+.+...+...+.|+|                  -+-.+|.++. ..|+|||..+..++....  +-.+++.++|
T Consensus       272 ~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~P~~~v~nihy~~iTDiaw  350 (434)
T KOG1009|consen  272 KRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLEPLAVVDNIHYSAITDIAW  350 (434)
T ss_pred             cCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEEeccccccceEEEeeeeeeeecceee
Confidence            234445555555555666655                  1223445554 579999999888877664  3345999999


Q ss_pred             cCCCCeEEEEEeCC
Q 005656          385 SPNMDVLATAHVDQ  398 (685)
Q Consensus       385 spdg~~Lat~~~d~  398 (685)
                      ++||.+|+.++.||
T Consensus       351 s~dg~~l~vSS~DG  364 (434)
T KOG1009|consen  351 SDDGSVLLVSSTDG  364 (434)
T ss_pred             cCCCcEEEEeccCC
Confidence            99999999999998

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.86  E-value=3.6e-20  Score=171.24  Aligned_cols=293  Identities=16%  Similarity=0.225  Sum_probs=220.4

Q ss_pred             CCCcEEEEEEcc----CCCCEEEEEeCCCcEEEEeCCCC---eeeEEeec-ccccCeeEEEEeCC----CcEEEEecCCC
Q 005656            1 MRGAVTALAFSS----DGQPLLASGASSGVISIWNLEKR---RLQSVIRE-AHDNAIISLHFFAN----EPVLMSASADN   68 (685)
Q Consensus         1 h~~~V~~l~fsp----dg~~~latg~~dg~I~vwd~~~~---~~~~~~~~-~h~~~V~~l~~sp~----~~~l~s~s~D~   68 (685)
                      |+.+|..++|.+    +....+||.+. ..+.+|.....   +.++.+.. .|....+.++|+-+    .+++|.||.-|
T Consensus        37 ~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~G  115 (385)
T KOG1034|consen   37 HNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLG  115 (385)
T ss_pred             CCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeeccee
Confidence            567899999984    22346777664 56889987653   33444433 37888999999864    45899999999


Q ss_pred             cEEEEEecCCCCCCceeEecccCCCCCeEEEEecC-CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccccc
Q 005656           69 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEE  147 (685)
Q Consensus        69 ~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (685)
                      .|+|.|+..+    ++...+.+|...|+.|.|+|+ .++++++|.|.+||+|++.++.++..+..               
T Consensus       116 vIrVid~~~~----~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG---------------  176 (385)
T KOG1034|consen  116 VIRVIDVVSG----QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGG---------------  176 (385)
T ss_pred             EEEEEecchh----hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecc---------------
Confidence            9999999887    777778899999999999997 57899999999999999999988776642               


Q ss_pred             ccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEE
Q 005656          148 ELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIE  227 (685)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~  227 (685)
                                                                        ..+|...|.++.|+++|.++++++.|.++.
T Consensus       177 --------------------------------------------------~egHrdeVLSvD~~~~gd~i~ScGmDhslk  206 (385)
T KOG1034|consen  177 --------------------------------------------------VEGHRDEVLSVDFSLDGDRIASCGMDHSLK  206 (385)
T ss_pred             --------------------------------------------------cccccCcEEEEEEcCCCCeeeccCCcceEE
Confidence                                                              117899999999999999999999999999


Q ss_pred             EEECCCCccccccc---------------cc----c-ccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECC-CCc-
Q 005656          228 RFNLQSGISRGSYL---------------DM----S-ERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK-GRD-  285 (685)
Q Consensus       228 ~~d~~~~~~~~~~~---------------~~----~-~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~-~~~-  285 (685)
                      +|++...+....+.               ..    + .....-|...|-|+.|-  |.++++-|-++.|..|... -++ 
T Consensus       207 ~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~  284 (385)
T KOG1034|consen  207 LWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEES  284 (385)
T ss_pred             EEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhh
Confidence            99998443221111               00    0 00223577788888876  4688888889999999872 111 


Q ss_pred             ------------eEEEeecC-Cce--eEEEEeecCCEEEEEeCCCeEEEEEcCCCeeE--EEEe--cCCCCeEEEEEcCC
Q 005656          286 ------------LKSRWEVG-CSL--VKIVYHRVNGLLATVADDLVIRLFDVVALRMV--RKFE--GHTDRITDFCFSED  346 (685)
Q Consensus       286 ------------~~~~~~~~-~~i--~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~--~~~~--~h~~~I~~l~~spd  346 (685)
                                  ....+..+ ..|  ...+|.|-+++||.|...|.|++||++...+.  .++.  .....|...+||.|
T Consensus       285 ~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~d  364 (385)
T KOG1034|consen  285 IHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRD  364 (385)
T ss_pred             hhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeeccc
Confidence                        12222222 233  34566777899999999999999999987653  1222  12456899999999


Q ss_pred             CCEEEEEeCCCcEEEEEcC
Q 005656          347 GKWLLSSGMDGSLRIWDVI  365 (685)
Q Consensus       347 g~~l~s~s~Dg~I~iwd~~  365 (685)
                      |..|+....|++|.-||.-
T Consensus       365 gs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  365 GSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             CcEEEEEeCCCcEEEEEee
Confidence            9999999999999999854

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.86  E-value=1.1e-19  Score=181.18  Aligned_cols=203  Identities=18%  Similarity=0.224  Sum_probs=151.9

Q ss_pred             CCCeEEEEEcc-CCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCC-CCEEEEEECCCeEEEE
Q 005656          202 PTAVKACTISA-CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMISAGYHGDIKVW  279 (685)
Q Consensus       202 ~~~v~~~~~s~-~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~s~dg~i~iw  279 (685)
                      ...|+.+.|.| |...|++++.||.|.+|.+..+....... .+......|...|+.+.|+|- ...|++++.|-+|++|
T Consensus       627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~-tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lW  705 (1012)
T KOG1445|consen  627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEM-TPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELW  705 (1012)
T ss_pred             CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccC-CcceeeecccceEEEEEecchhhhHhhhhhccceeeee
Confidence            45678888888 67889999999999999998765433322 122234489999999999995 4678999999999999


Q ss_pred             ECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCe-eEEEEecCC-CCeEEEEEcCCCCEEEEEeCC
Q 005656          280 DFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALR-MVRKFEGHT-DRITDFCFSEDGKWLLSSGMD  356 (685)
Q Consensus       280 d~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~-~~~~~~~h~-~~I~~l~~spdg~~l~s~s~D  356 (685)
                      |+.+++....+..+ ..|..++|+|+|+.+|+.+.||+|++|..++++ .++.-.+.. .+-..+.|.-||+++++.+.|
T Consensus       706 Dl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfd  785 (1012)
T KOG1445|consen  706 DLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFD  785 (1012)
T ss_pred             ehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccc
Confidence            99999887777655 899999999999999999999999999988763 444433322 223457788899999988766


Q ss_pred             C----cEEEEEcCC--CceeeEEeeccc--eEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656          357 G----SLRIWDVIL--ARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       357 g----~I~iwd~~~--~~~i~~~~~~~~--v~~v~~spdg~~Lat~~~d~~~I~lW~  405 (685)
                      .    .|.+||..+  +..+.+...+..  +.--.+.+|...|+.++..+..|++|.
T Consensus       786 k~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yE  842 (1012)
T KOG1445|consen  786 KSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYE  842 (1012)
T ss_pred             ccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEE
Confidence            4    688998765  334444333222  333356677777776666666899886

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=8.9e-20  Score=171.94  Aligned_cols=291  Identities=15%  Similarity=0.198  Sum_probs=218.5

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCC------CeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEE
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEK------RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI   74 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~------~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd   74 (685)
                      |.|.|+++.||.+|+ +||+|+.|..+++|+++.      .+++......|...|.|++|....+.+++|+.+++|...|
T Consensus        55 H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HD  133 (609)
T KOG4227|consen   55 HTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHD  133 (609)
T ss_pred             hccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeee
Confidence            889999999999998 999999999999999863      4666666667889999999999999999999999999999


Q ss_pred             ecCCCCCCceeEec--ccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccC
Q 005656           75 FDTTDGDPRLLRFR--SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK  152 (685)
Q Consensus        75 ~~~~~~~~~~~~~~--~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (685)
                      +.+.    +.+...  ....+.|..+..+|-.+.|++.+.+|.|.+||.+..+....+.                     
T Consensus       134 iEt~----qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~---------------------  188 (609)
T KOG4227|consen  134 IETK----QSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLV---------------------  188 (609)
T ss_pred             cccc----eeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCcee---------------------
Confidence            9886    333332  2234589999999998999999999999999997654221110                     


Q ss_pred             ceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEEC
Q 005656          153 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGGWIERFNL  231 (685)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~~~d~  231 (685)
                                          |                        ....+....++.|+|.. ..+++.+..|-+-+||.
T Consensus       189 --------------------~------------------------~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~  224 (609)
T KOG4227|consen  189 --------------------L------------------------PANSGKNFYTAEFHPETPALILVNSETGGPNVFDR  224 (609)
T ss_pred             --------------------e------------------------ecCCCccceeeeecCCCceeEEeccccCCCCceee
Confidence                                0                        00334567778888854 66788888899999998


Q ss_pred             CCCccc-cccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCC-ceEEEeecC-------CceeEEEEe
Q 005656          232 QSGISR-GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-DLKSRWEVG-------CSLVKIVYH  302 (685)
Q Consensus       232 ~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~-------~~i~~~~~~  302 (685)
                      +..... ..+.  ...........-.++.|+|.|..+.+.-....-.+||+.+. ..+..+.+.       ..+.+++|.
T Consensus       225 R~~~~~~~~~~--~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~  302 (609)
T KOG4227|consen  225 RMQARPVYQRS--MFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFI  302 (609)
T ss_pred             ccccchHHhhh--ccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeee
Confidence            754331 1110  00011122233467899999999888776666778888874 444555532       345667776


Q ss_pred             ecCCEEEEEeCCCeEEEEEcCC----------C-------------eeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 005656          303 RVNGLLATVADDLVIRLFDVVA----------L-------------RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSL  359 (685)
Q Consensus       303 ~~~~~l~~~~~dg~I~i~d~~~----------~-------------~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I  359 (685)
                      .+ ..+++|+++-.|++|.+..          |             +.+..++||.+-++.+.|+|...+|++.+-.+.+
T Consensus       303 ~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~  381 (609)
T KOG4227|consen  303 DD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSF  381 (609)
T ss_pred             cc-eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhhe
Confidence            54 4499999999999998742          1             2245688999999999999999999999999999


Q ss_pred             EEEEc
Q 005656          360 RIWDV  364 (685)
Q Consensus       360 ~iwd~  364 (685)
                      ++|.-
T Consensus       382 KlWS~  386 (609)
T KOG4227|consen  382 KLWSD  386 (609)
T ss_pred             ecccc
Confidence            99964

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.85  E-value=2.5e-19  Score=165.75  Aligned_cols=292  Identities=15%  Similarity=0.255  Sum_probs=215.2

Q ss_pred             eeEEeecccccCeeEEEEeC----CCc-EEEEecCCCcEEEEEecCCCCCCceeEec-c-cCCCCCeEEEEecC----CC
Q 005656           37 LQSVIREAHDNAIISLHFFA----NEP-VLMSASADNSIKMWIFDTTDGDPRLLRFR-S-GHSAPPLCIRFYAN----GR  105 (685)
Q Consensus        37 ~~~~~~~~h~~~V~~l~~sp----~~~-~l~s~s~D~~v~iWd~~~~~~~~~~~~~~-~-~h~~~v~~i~~~~~----~~  105 (685)
                      ....++..|+.+|..++|++    +.. .++|+| .+.+.+|......+ .+.+... . .|......++|+-+    ..
T Consensus        29 ~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~-ir~lq~y~D~d~~Esfytcsw~yd~~~~~p  106 (385)
T KOG1034|consen   29 YTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGG-IRLLQSYADEDHDESFYTCSWSYDSNTGNP  106 (385)
T ss_pred             eeeehhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccc-eeeeeeccCCCCCcceEEEEEEecCCCCCe
Confidence            34455568999999999985    333 555555 45888998765432 2333332 2 36667778888764    45


Q ss_pred             EEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEc
Q 005656          106 HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRL  185 (685)
Q Consensus       106 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~  185 (685)
                      +++.+|.-|.|+|.|+.+++....+.                                                      
T Consensus       107 ~la~~G~~GvIrVid~~~~~~~~~~~------------------------------------------------------  132 (385)
T KOG1034|consen  107 FLAAGGYLGVIRVIDVVSGQCSKNYR------------------------------------------------------  132 (385)
T ss_pred             eEEeecceeEEEEEecchhhhcccee------------------------------------------------------
Confidence            88899999999999998887766553                                                      


Q ss_pred             CccccCceeecCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCC
Q 005656          186 QNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN  264 (685)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  264 (685)
                                    +|...|..+.+.|.. +++++++.|..|++||+++..++..+.     ...+|.+.|.++.|+++|
T Consensus       133 --------------ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG-----G~egHrdeVLSvD~~~~g  193 (385)
T KOG1034|consen  133 --------------GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG-----GVEGHRDEVLSVDFSLDG  193 (385)
T ss_pred             --------------ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec-----ccccccCcEEEEEEcCCC
Confidence                          778889999999965 788999999999999999999988875     334899999999999999


Q ss_pred             CEEEEEECCCeEEEEECCCCceEEEeec-----------------------------CCceeEEEEeecCCEEEEEeCCC
Q 005656          265 TLMISAGYHGDIKVWDFKGRDLKSRWEV-----------------------------GCSLVKIVYHRVNGLLATVADDL  315 (685)
Q Consensus       265 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----------------------------~~~i~~~~~~~~~~~l~~~~~dg  315 (685)
                      .+++++|.|..+++|++...+....++.                             ...|-|+.|-  |.++++=+-++
T Consensus       194 d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscen  271 (385)
T KOG1034|consen  194 DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCEN  271 (385)
T ss_pred             CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCc
Confidence            9999999999999999985432211110                             0112222222  67888888889


Q ss_pred             eEEEEEcC-CC-------------eeEEEEecCCCCeEEEEE--cCCCCEEEEEeCCCcEEEEEcCCCcee--eEEee--
Q 005656          316 VIRLFDVV-AL-------------RMVRKFEGHTDRITDFCF--SEDGKWLLSSGMDGSLRIWDVILARQI--DAIHV--  375 (685)
Q Consensus       316 ~I~i~d~~-~~-------------~~~~~~~~h~~~I~~l~~--spdg~~l~s~s~Dg~I~iwd~~~~~~i--~~~~~--  375 (685)
                      .|..|... -.             ..+.++.-....|.-+.|  .|-+++||.|...|.|++||+......  .++.+  
T Consensus       272 aI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~  351 (385)
T KOG1034|consen  272 AIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSK  351 (385)
T ss_pred             eEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEecc
Confidence            99999761 11             223444444556666655  566789999999999999999877653  22322  


Q ss_pred             -ccceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656          376 -DVSITALSLSPNMDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       376 -~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~  406 (685)
                       ...|...+||.||.+|+..+.|+ .|.-|+.
T Consensus       352 ~~~tVRQ~sfS~dgs~lv~vcdd~-~Vwrwdr  382 (385)
T KOG1034|consen  352 SGSTVRQTSFSRDGSILVLVCDDG-TVWRWDR  382 (385)
T ss_pred             ccceeeeeeecccCcEEEEEeCCC-cEEEEEe
Confidence             23399999999999999999887 8888874

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=3.6e-18  Score=178.05  Aligned_cols=328  Identities=16%  Similarity=0.232  Sum_probs=231.9

Q ss_pred             EEEEccCCCCEEEEEeCCCcEEEEeCCCCee---eEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCc
Q 005656            7 ALAFSSDGQPLLASGASSGVISIWNLEKRRL---QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPR   83 (685)
Q Consensus         7 ~l~fspdg~~~latg~~dg~I~vwd~~~~~~---~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~   83 (685)
                      +|.+++.|. +.+.. .+..+.+|+..++..   .+.....|.-.+++.+++|+++++|+|..||.|.+|.=-..+....
T Consensus       165 ~I~~~~~ge-~~~i~-~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~  242 (792)
T KOG1963|consen  165 SIVDNNSGE-FKGIV-HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSE  242 (792)
T ss_pred             cEEEcCCce-EEEEE-EeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccc
Confidence            566666666 33333 344577777766431   1111124777789999999999999999999999995332122223


Q ss_pred             eeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccccc
Q 005656           84 LLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIR  163 (685)
Q Consensus        84 ~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (685)
                      ..+.+.=|...|+++.|+++|.+|+|||..|.+-+|.+.+++. +-++                                
T Consensus       243 t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k-qfLP--------------------------------  289 (792)
T KOG1963|consen  243 TCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK-QFLP--------------------------------  289 (792)
T ss_pred             cceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCc-cccc--------------------------------
Confidence            3445566899999999999999999999999999999988762 1111                                


Q ss_pred             ccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccc
Q 005656          164 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDM  243 (685)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~  243 (685)
                                                          ...++|..+.+|||+++.++...|..|.+..+.+......+...
T Consensus       290 ------------------------------------RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi  333 (792)
T KOG1963|consen  290 ------------------------------------RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGI  333 (792)
T ss_pred             ------------------------------------ccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCc
Confidence                                                44678999999999999999999999999988766554443221


Q ss_pred             ccc---ccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec------------CCceeEEEEeecCCEE
Q 005656          244 SER---SNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV------------GCSLVKIVYHRVNGLL  308 (685)
Q Consensus       244 ~~~---~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~------------~~~i~~~~~~~~~~~l  308 (685)
                      ...   ......+-.+.++++|.-+.++-.+..|.|.+||+.+...+..+..            .-.++.++.+..|.++
T Consensus       334 ~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~m  413 (792)
T KOG1963|consen  334 KPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWM  413 (792)
T ss_pred             cCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEE
Confidence            111   1123456678899999777888899999999999988766554431            1356777777788898


Q ss_pred             EEEeC--------C--CeEEEEEcCCCee----EEEE-ecCCCCeEEEEEcC-CCC-EEEEEeCCCcEEEEEcCCCc---
Q 005656          309 ATVAD--------D--LVIRLFDVVALRM----VRKF-EGHTDRITDFCFSE-DGK-WLLSSGMDGSLRIWDVILAR---  368 (685)
Q Consensus       309 ~~~~~--------d--g~I~i~d~~~~~~----~~~~-~~h~~~I~~l~~sp-dg~-~l~s~s~Dg~I~iwd~~~~~---  368 (685)
                      +++-.        |  ..+++|-......    ...+ ..|...+...++.+ ... ..++++.||.++||-+.+.+   
T Consensus       414 aT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~  493 (792)
T KOG1963|consen  414 ATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIY  493 (792)
T ss_pred             EEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccC
Confidence            88742        3  2577886654322    2222 35777766666654 223 78999999999999883321   


Q ss_pred             -------e--eeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656          369 -------Q--IDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRC  408 (685)
Q Consensus       369 -------~--i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~  408 (685)
                             +  +..+ +..++++++|+.||..|+++..|  .|.+|+...
T Consensus       494 k~~s~W~c~~i~sy-~k~~i~a~~fs~dGslla~s~~~--~Itiwd~~~  539 (792)
T KOG1963|consen  494 KKSSNWTCKAIGSY-HKTPITALCFSQDGSLLAVSFDD--TITIWDYDT  539 (792)
T ss_pred             cCccceEEeeeecc-ccCcccchhhcCCCcEEEEecCC--EEEEecCCC
Confidence                   1  1121 34569999999999888887644  999998655

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.85  E-value=3.9e-18  Score=174.74  Aligned_cols=274  Identities=10%  Similarity=0.119  Sum_probs=186.3

Q ss_pred             EEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEe-CCCceEEEEeecCceeeEechhhHHHHH
Q 005656           61 LMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRA  139 (685)
Q Consensus        61 l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~  139 (685)
                      .++...++.|.+|++++. +..+.+.... +.+.+..++++|++++|++++ .++.|.+|++...........       
T Consensus         5 y~~~~~~~~I~~~~~~~~-g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~-------   75 (330)
T PRK11028          5 YIASPESQQIHVWNLNHE-GALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAE-------   75 (330)
T ss_pred             EEEcCCCCCEEEEEECCC-CceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeee-------
Confidence            444567999999999643 3334445443 346678899999999887765 478899999862211111100       


Q ss_pred             hhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEE
Q 005656          140 RKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL  219 (685)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  219 (685)
                                                                            .     ........++++|+|+++++
T Consensus        76 ------------------------------------------------------~-----~~~~~p~~i~~~~~g~~l~v   96 (330)
T PRK11028         76 ------------------------------------------------------S-----PLPGSPTHISTDHQGRFLFS   96 (330)
T ss_pred             ------------------------------------------------------e-----cCCCCceEEEECCCCCEEEE
Confidence                                                                  0     11234568999999999888


Q ss_pred             Ee-cCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCceEE-------Ee
Q 005656          220 GT-AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKS-------RW  290 (685)
Q Consensus       220 g~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~-------~~  290 (685)
                      ++ .++.|.+|++..........     ....+.....+++++|+++++++++ .++.|.+||+.+...+.       ..
T Consensus        97 ~~~~~~~v~v~~~~~~g~~~~~~-----~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~  171 (330)
T PRK11028         97 ASYNANCVSVSPLDKDGIPVAPI-----QIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTT  171 (330)
T ss_pred             EEcCCCeEEEEEECCCCCCCCce-----eeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceec
Confidence            76 47899999997432111110     0002334467788999999886655 66999999997632221       22


Q ss_pred             ecCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCC--C--eeEEEEecC------CCCeEEEEEcCCCCEEEEEe-CCCc
Q 005656          291 EVGCSLVKIVYHRVNGLLATVAD-DLVIRLFDVVA--L--RMVRKFEGH------TDRITDFCFSEDGKWLLSSG-MDGS  358 (685)
Q Consensus       291 ~~~~~i~~~~~~~~~~~l~~~~~-dg~I~i~d~~~--~--~~~~~~~~h------~~~I~~l~~spdg~~l~s~s-~Dg~  358 (685)
                      ..+.....+.|+|+|++++++.. ++.|.+|++..  +  +.+..+..+      ......+.++|+|++++++. .++.
T Consensus       172 ~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~  251 (330)
T PRK11028        172 VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASL  251 (330)
T ss_pred             CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCe
Confidence            23456678999999999988876 89999999973  3  334444322      12234689999999999885 4789


Q ss_pred             EEEEEcCCCc----eeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          359 LRIWDVILAR----QIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       359 I~iwd~~~~~----~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                      |.+|++....    .+..+........+.|+|||++|++++...+.|.+|...
T Consensus       252 I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        252 ISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             EEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            9999996432    233333333467899999999999999766699999754

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.85  E-value=3.9e-18  Score=174.75  Aligned_cols=296  Identities=13%  Similarity=0.145  Sum_probs=191.2

Q ss_pred             EEEEEeCCCcEEEEeCCC-Ce--eeEEeecccccCeeEEEEeCCCcEEEEe-cCCCcEEEEEecCCCCCCceeEecccCC
Q 005656           17 LLASGASSGVISIWNLEK-RR--LQSVIREAHDNAIISLHFFANEPVLMSA-SADNSIKMWIFDTTDGDPRLLRFRSGHS   92 (685)
Q Consensus        17 ~latg~~dg~I~vwd~~~-~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~-s~D~~v~iWd~~~~~~~~~~~~~~~~h~   92 (685)
                      +.++...++.|.+||+.+ ++  .+..+.  +.+....++++|++++|+++ ..++.|.+|+++. ++........ ...
T Consensus         4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~~~--~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~-~g~l~~~~~~-~~~   79 (330)
T PRK11028          4 VYIASPESQQIHVWNLNHEGALTLLQVVD--VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIAD-DGALTFAAES-PLP   79 (330)
T ss_pred             EEEEcCCCCCEEEEEECCCCceeeeeEEe--cCCCCccEEECCCCCEEEEEECCCCcEEEEEECC-CCceEEeeee-cCC
Confidence            344556789999999964 43  444443  44678899999999988665 4588999999973 2322222222 233


Q ss_pred             CCCeEEEEecCCCEEEEEeC-CCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceE
Q 005656           93 APPLCIRFYANGRHILSAGQ-DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVV  171 (685)
Q Consensus        93 ~~v~~i~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (685)
                      ..+..++|+|+++++++++. ++.|.+|++.+........                                        
T Consensus        80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~----------------------------------------  119 (330)
T PRK11028         80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPI----------------------------------------  119 (330)
T ss_pred             CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCce----------------------------------------
Confidence            45788999999999988875 7899999986432111000                                        


Q ss_pred             EEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECCCCccccccccccccccCC
Q 005656          172 TCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-AGGWIERFNLQSGISRGSYLDMSERSNYA  250 (685)
Q Consensus       172 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~  250 (685)
                                              ... .......+++++|+|+++++++ .++.|.+||+.+............ . ..
T Consensus       120 ------------------------~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~-~-~~  172 (330)
T PRK11028        120 ------------------------QII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEV-T-TV  172 (330)
T ss_pred             ------------------------eec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCce-e-cC
Confidence                                    000 1123356788999999986655 569999999986332211000000 0 01


Q ss_pred             CCcCEEEEEEcCCCCEEEEEEC-CCeEEEEECCC--Cce--EEEeec-------CCceeEEEEeecCCEEEEEeC-CCeE
Q 005656          251 HNGEVVGVACDSTNTLMISAGY-HGDIKVWDFKG--RDL--KSRWEV-------GCSLVKIVYHRVNGLLATVAD-DLVI  317 (685)
Q Consensus       251 h~~~v~~l~~~~~~~~l~s~s~-dg~i~iwd~~~--~~~--~~~~~~-------~~~i~~~~~~~~~~~l~~~~~-dg~I  317 (685)
                      .......+.|+|++++++++.. +++|.+|++..  ++.  ...+..       ......+.++|++++++++.. ++.|
T Consensus       173 ~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I  252 (330)
T PRK11028        173 EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLI  252 (330)
T ss_pred             CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeE
Confidence            1234678999999999988775 89999999973  332  333221       112335889999999888854 7899


Q ss_pred             EEEEcCCCe----eEEEEecCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcC--CCce--eeEEeeccceEEEEE
Q 005656          318 RLFDVVALR----MVRKFEGHTDRITDFCFSEDGKWLLSSGM-DGSLRIWDVI--LARQ--IDAIHVDVSITALSL  384 (685)
Q Consensus       318 ~i~d~~~~~----~~~~~~~h~~~I~~l~~spdg~~l~s~s~-Dg~I~iwd~~--~~~~--i~~~~~~~~v~~v~~  384 (685)
                      .+|++....    .+...... .....+.|+|||++|+++.. +++|.+|++.  ++.+  +..+.......+++|
T Consensus       253 ~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~~~~~g~~P~~~~~  327 (330)
T PRK11028        253 SVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELGRYAVGQGPMWVSV  327 (330)
T ss_pred             EEEEEeCCCCeEEEeEEEecc-ccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEccccccCCCceEEEE
Confidence            999996543    22322221 24568899999999998774 8999999875  4433  333433333555555

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=4.5e-19  Score=174.33  Aligned_cols=230  Identities=19%  Similarity=0.270  Sum_probs=165.7

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeC--CCcEEEEecCCCcEEEEEecCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA--NEPVLMSASADNSIKMWIFDTT   78 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~s~D~~v~iWd~~~~   78 (685)
                      |+|.|+|+.|+.||. +|++|+.|-.+.|||.-..++++.+..||...|.++.|.|  +.++++||..|..|+++|++..
T Consensus        49 H~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~  127 (758)
T KOG1310|consen   49 HTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSS  127 (758)
T ss_pred             ccceecceeecCCCC-EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccc
Confidence            899999999999999 9999999999999999999999999999999999999999  4569999999999999999853


Q ss_pred             C------CCCceeEecccCCCCCeEEEEecCC-CEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccccccccc
Q 005656           79 D------GDPRLLRFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL  151 (685)
Q Consensus        79 ~------~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (685)
                      .      +..........|...|..|+-.|++ +.+.+++.||+|+-+|++.......-...+.                
T Consensus       128 ~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~----------------  191 (758)
T KOG1310|consen  128 KEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPS----------------  191 (758)
T ss_pred             cccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccH----------------
Confidence            2      1234455667899999999999997 7888999999999999976432211100000                


Q ss_pred             CceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccC-CCEEEEEecCCcEEEEE
Q 005656          152 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC-GNFAVLGTAGGWIERFN  230 (685)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~dg~i~~~d  230 (685)
                                                                .+.......-...|+.++|. ..++++|+++-..++||
T Consensus       192 ------------------------------------------~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD  229 (758)
T KOG1310|consen  192 ------------------------------------------ILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYD  229 (758)
T ss_pred             ------------------------------------------HHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhh
Confidence                                                      00000012245678999995 46889999999999999


Q ss_pred             CCCC--------cc----------ccccccccccccCC-CC---cCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEE
Q 005656          231 LQSG--------IS----------RGSYLDMSERSNYA-HN---GEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS  288 (685)
Q Consensus       231 ~~~~--------~~----------~~~~~~~~~~~~~~-h~---~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~  288 (685)
                      .+..        ..          +..|.........+ ..   ..++-+.|+|+|.-++..-..-.|+++|+..++...
T Consensus       230 ~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~  309 (758)
T KOG1310|consen  230 RRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPT  309 (758)
T ss_pred             hhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence            4321        10          11110000000001 01   125667899999877766556689999998776544


Q ss_pred             E
Q 005656          289 R  289 (685)
Q Consensus       289 ~  289 (685)
                      .
T Consensus       310 ~  310 (758)
T KOG1310|consen  310 P  310 (758)
T ss_pred             e
Confidence            3

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.84  E-value=3e-19  Score=179.07  Aligned_cols=269  Identities=12%  Similarity=0.194  Sum_probs=209.9

Q ss_pred             CeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCcee
Q 005656           48 AIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQS  127 (685)
Q Consensus        48 ~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~  127 (685)
                      .|..++|-|||..|+.+. +..+.+||.+.+    ..+.++++|...|.|++|+.||+.+++|+.|..|.+|+-.-....
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG----~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L   88 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDG----TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL   88 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCc----ccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee
Confidence            899999999999777764 457889988877    778889999999999999999999999999999999985332211


Q ss_pred             eEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEE
Q 005656          128 RELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKA  207 (685)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~  207 (685)
                      +-                                                                      .|...|.|
T Consensus        89 kY----------------------------------------------------------------------SH~D~IQC   98 (1081)
T KOG1538|consen   89 KY----------------------------------------------------------------------SHNDAIQC   98 (1081)
T ss_pred             ee----------------------------------------------------------------------ccCCeeeE
Confidence            10                                                                      67889999


Q ss_pred             EEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceE
Q 005656          208 CTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLK  287 (685)
Q Consensus       208 ~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~  287 (685)
                      +.|+|....+++++-+ ..-+|..........          .....+.+.+|..||++++.|-.+|+|.+-+-......
T Consensus        99 MsFNP~~h~LasCsLs-dFglWS~~qK~V~K~----------kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~  167 (1081)
T KOG1538|consen   99 MSFNPITHQLASCSLS-DFGLWSPEQKSVSKH----------KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKV  167 (1081)
T ss_pred             eecCchHHHhhhcchh-hccccChhhhhHHhh----------hhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcce
Confidence            9999999988887654 355676544332211          34567889999999999999999999999875433333


Q ss_pred             EEee---cCCceeEEEEeecCC-----EEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 005656          288 SRWE---VGCSLVKIVYHRVNG-----LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSL  359 (685)
Q Consensus       288 ~~~~---~~~~i~~~~~~~~~~-----~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I  359 (685)
                      ..-.   .+++|.+++|+|...     .+++.....++.+|.+. |+.+..-+.-.-...|+.+.++|.++..|+.|+.+
T Consensus       168 ~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L  246 (1081)
T KOG1538|consen  168 KIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQL  246 (1081)
T ss_pred             EEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCce
Confidence            3222   248999999999753     78888888888888765 45454434344456789999999999999999999


Q ss_pred             EEEEcCCCceeeEEe-eccceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656          360 RIWDVILARQIDAIH-VDVSITALSLSPNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       360 ~iwd~~~~~~i~~~~-~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~  405 (685)
                      ++|. +.|-.+.++. .+..|++++..|++++.+.|+.|| +|--|+
T Consensus       247 ~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDG-TiACyN  291 (1081)
T KOG1538|consen  247 SLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDG-TIACYN  291 (1081)
T ss_pred             EEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccC-eeehhh
Confidence            9997 4565555554 455599999999999999999998 888775

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.84  E-value=1.2e-18  Score=174.31  Aligned_cols=476  Identities=14%  Similarity=0.121  Sum_probs=265.3

Q ss_pred             cCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEE
Q 005656          102 ANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY  181 (685)
Q Consensus       102 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (685)
                      |...+++....||.+|+|++..++...++....                                      ...+.....
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~--------------------------------------~~s~t~~~~   44 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIA--------------------------------------SLSGTCTYT   44 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccch--------------------------------------hccCcceeE
Confidence            346789999999999999999998877764211                                      112233344


Q ss_pred             EEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEc
Q 005656          182 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACD  261 (685)
Q Consensus       182 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  261 (685)
                      .|.+.-.....+...       --....-+.+-..++.|...|.|.+|+...|+....+.      ...|.+.|.++.++
T Consensus        45 ~w~L~~~~s~~k~~~-------~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~s------t~~h~~~v~~~~~~  111 (541)
T KOG4547|consen   45 KWGLSADYSPMKWLS-------LEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLS------TDKHYGNVNEILDA  111 (541)
T ss_pred             EEEEEeccchHHHHh-------HHHHhhccCCceEEEeecCCccEEEEEecCCeEEEEEe------cCCCCCcceeeecc
Confidence            555322111110000       00011123345678899999999999999999887774      23899999999999


Q ss_pred             CCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEE
Q 005656          262 STNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITD  340 (685)
Q Consensus       262 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~  340 (685)
                      .+-..|.+++.|+.+..|+......++.+... ..+.+++++|||..+++++  +.|++||+++++.+..|.||.++|.+
T Consensus       112 ~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t  189 (541)
T KOG4547|consen  112 QRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRT  189 (541)
T ss_pred             cccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEE
Confidence            98899999999999999999999999888765 6788999999999999987  79999999999999999999999999


Q ss_pred             EEEcCC-----CCEEEEE-eCCCcEEEEEcCC----CceeeEEeeccc-eEEEE-EcCCCC--eEEEEEeCCCeEEEEEc
Q 005656          341 FCFSED-----GKWLLSS-GMDGSLRIWDVIL----ARQIDAIHVDVS-ITALS-LSPNMD--VLATAHVDQNGVYLWVN  406 (685)
Q Consensus       341 l~~spd-----g~~l~s~-s~Dg~I~iwd~~~----~~~i~~~~~~~~-v~~v~-~spdg~--~Lat~~~d~~~I~lW~~  406 (685)
                      +.|..+     |.++.++ ..+..+.+|-+..    +.....+..+.. |+.=. ...++.  +..+.+..+ ++..|..
T Consensus       190 ~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkks~~~sl~~~dipv~~ds~~~ed~~~~l~lAst~~~-g~v~~~~  268 (541)
T KOG4547|consen  190 LSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKKSLSCSLTVPDIPVTSDSGLLEDGTIPLVLASTLIP-GIVHLKL  268 (541)
T ss_pred             EEEEEeccccccceeeeccccccceeEEEEEcccccchhheeeccCCCCeEeccccccccccceEEeeeccC-ceeeecc
Confidence            999876     6666654 4566688887654    233344443333 32222 223333  333333333 4444432


Q ss_pred             CCCcCCCCCCCCCCCCccceeecCCCccCCCCcCCCCC--CCCCCcCCCCCCCCCCCCCCcCCCCc------CceeecCC
Q 005656          407 RCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENS--SQPDVHRTDRVPKDSFGLPTFKQQIP------DLVTLSLL  478 (685)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ls~~  478 (685)
                      +..-.-...  ....-........|.........+...  -..-.............+...-.+..      +.+++...
T Consensus       269 ~nl~~l~~~--~~~kv~~~~~~~s~g~~a~~~~~~~~~~~l~~g~~~~ps~~~vsln~~~~l~l~~R~l~~~~~~~~~~~  346 (541)
T KOG4547|consen  269 SNLIILLHK--KIVKVNGYNADSSKGFLAALFGIDKAHALLAYGSLVNPSFVRVSLNLGQKLHLMDRDLSGSGKLKLVTS  346 (541)
T ss_pred             ccHHHHhcC--ccccccceeeecccchhhhhcccchhhhhhhcccccCchhhhhhhhhcchhhhhhhhccCCcccceeee
Confidence            111100000  000000001111111000000000000  00000000000000000000000000      00011110


Q ss_pred             cHhHHhhccchHHHHhhcCC-CCCCCCCCCCCccccCCCCCCCccccCCCCCccccccccc-cCCCCCCCCCccHHHHHH
Q 005656          479 PKSQWQSLINLDIIKARNKP-IEPPKKPEKAPFFLPSVPSLSGEILFKPSESTKEDTESLK-VGNKTKPDIPVSQFIQLL  556 (685)
Q Consensus       479 ~~~~~~~~~~l~~i~~r~k~-~~~~~~~~~~pffl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l  556 (685)
                      -..+=|-..|-  .++-+.+ ...+++|...  -||.... ...  .+...++.-+....+ .....+.....-.+...+
T Consensus       347 k~~~rqv~~n~--~~k~~~~~~~q~~~p~~~--~l~v~~~-~g~--iEv~~earl~~l~i~~~~~~~k~~~~tll~s~~l  419 (541)
T KOG4547|consen  347 KEGKRQVVLNS--VAKLGEAEVIQEEPPLTE--DLPVLTK-GGD--IEVSTEARLSALDINLTSNADKSDESTLLASVSL  419 (541)
T ss_pred             ecccceeecch--hhhhcchhhhcccCcchh--cchhhhc-CCc--ceeeehhhhhhcccccccccchhhhhccchhhhh
Confidence            00000000000  0011111 0001111110  0111000 000  000000000000000 111122222334466778


Q ss_pred             hhccccCChHHHHHHHhcCCcchhhhhhccCCCCCCCCcccccCcccHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHH
Q 005656          557 HSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEISCR-NNFEFIQAVIRLFL  635 (685)
Q Consensus       557 ~~~~~~~~~~~~~~~l~~~~~s~id~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~~e~~~~~l~~~l  635 (685)
                      .|++.++++....++|.+.+|..|+.++-+|.+               +.+..|++.+..+++++ .+-.....|+...|
T Consensus       420 ~Q~L~srd~~~~~~Vl~s~d~~lik~tv~rme~---------------st~~pll~ela~rlq~~~~~~~~~l~w~k~~l  484 (541)
T KOG4547|consen  420 NQALSSRDSHILTDVLISRDEELIKSTVLRMEE---------------STAPPLLEELAPRLQSRASRGRILLVWLKTRL  484 (541)
T ss_pred             hhhhcccccccchhhhccCChHHHHHHHhhcCh---------------hhccchhccchhhhccccccCchhhhhhhhhh
Confidence            899999999999999999999999999999965               66889999999999999 66778899999999


Q ss_pred             HhhccccccchHHHHHHHHH
Q 005656          636 KIHGETVRCHTKLQDKARKL  655 (685)
Q Consensus       636 ~~h~~~l~~~~~l~~~~~~l  655 (685)
                      -.|+++|++.|+..+.+..+
T Consensus       485 ~~h~~yl~sv~~~~~~l~~~  504 (541)
T KOG4547|consen  485 TSHNSYLSSVPDQLETLSGK  504 (541)
T ss_pred             hcccceeecCcchhhHHHHH
Confidence            99999999998744444333

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.84  E-value=9.4e-19  Score=159.25  Aligned_cols=277  Identities=17%  Similarity=0.285  Sum_probs=203.3

Q ss_pred             cEEEEEEc--cCCCCEEEEEe----CCCcEEEEeC--CCCeeeEEeecccccCeeEEEEeCCCc-----EEEEecCCCcE
Q 005656            4 AVTALAFS--SDGQPLLASGA----SSGVISIWNL--EKRRLQSVIREAHDNAIISLHFFANEP-----VLMSASADNSI   70 (685)
Q Consensus         4 ~V~~l~fs--pdg~~~latg~----~dg~I~vwd~--~~~~~~~~~~~~h~~~V~~l~~sp~~~-----~l~s~s~D~~v   70 (685)
                      ++.++.||  |+.+..||.|+    +.+.|.|-.+  .+++.+..-...|.-+++.+.|.|+..     +|||++  -.+
T Consensus        46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~L  123 (364)
T KOG0290|consen   46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFL  123 (364)
T ss_pred             ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--CeE
Confidence            46788887  56667899997    4566776654  456655544447999999999999873     666654  379


Q ss_pred             EEEEecCCCCCCceeEe-----cccCCCCCeEEEEec-CCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccc
Q 005656           71 KMWIFDTTDGDPRLLRF-----RSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKM  144 (685)
Q Consensus        71 ~iWd~~~~~~~~~~~~~-----~~~h~~~v~~i~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  144 (685)
                      |+|.+...+....+...     -..+.+++++..|+. +-+++.+++-|-+..|||++++..-                 
T Consensus       124 RlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~-----------------  186 (364)
T KOG0290|consen  124 RLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSG-----------------  186 (364)
T ss_pred             EEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecccc-----------------
Confidence            99998754433222222     235678999999986 5678889999999999999765210                 


Q ss_pred             cccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCC
Q 005656          145 KEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG  224 (685)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg  224 (685)
                                                                                                      
T Consensus       187 --------------------------------------------------------------------------------  186 (364)
T KOG0290|consen  187 --------------------------------------------------------------------------------  186 (364)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCC-CEEEEEECCCeEEEEECCCCceEEEe---ec-CCceeEE
Q 005656          225 WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRW---EV-GCSLVKI  299 (685)
Q Consensus       225 ~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~---~~-~~~i~~~  299 (685)
                                ....+        ..+|...|..++|...+ +.+++.|.||.+++||++.......+   .. +.+...+
T Consensus       187 ----------~vkTQ--------LIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRL  248 (364)
T KOG0290|consen  187 ----------TVKTQ--------LIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRL  248 (364)
T ss_pred             ----------ceeeE--------EEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceee
Confidence                      00001        11899999999998865 57899999999999999876533322   22 4678888


Q ss_pred             EEeecCC-EEEEEeCC-CeEEEEEcCCC-eeEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCc------e
Q 005656          300 VYHRVNG-LLATVADD-LVIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILAR------Q  369 (685)
Q Consensus       300 ~~~~~~~-~l~~~~~d-g~I~i~d~~~~-~~~~~~~~h~~~I~~l~~spdg-~~l~s~s~Dg~I~iwd~~~~~------~  369 (685)
                      +|++... ++|+-..| ..|.|.|++.. .++.++++|.+.|++++|.|.. ..|+||+.|..+.+||+...-      +
T Consensus       249 swnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dP  328 (364)
T KOG0290|consen  249 SWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDP  328 (364)
T ss_pred             ccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCc
Confidence            8987654 66665544 58999999864 7789999999999999999954 589999999999999997532      3


Q ss_pred             eeEEeeccceEEEEEcC-CCCeEEEEEeC
Q 005656          370 IDAIHVDVSITALSLSP-NMDVLATAHVD  397 (685)
Q Consensus       370 i~~~~~~~~v~~v~~sp-dg~~Lat~~~d  397 (685)
                      +-.+.....|+.+.|++ .+++++.+...
T Consensus       329 ilay~a~~EVNqi~Ws~~~~Dwiai~~~k  357 (364)
T KOG0290|consen  329 ILAYTAGGEVNQIQWSSSQPDWIAICFGK  357 (364)
T ss_pred             hhhhhccceeeeeeecccCCCEEEEEecC
Confidence            33445566699999996 57788888754

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=3.6e-19  Score=165.69  Aligned_cols=274  Identities=16%  Similarity=0.279  Sum_probs=199.3

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeC--CCcEEEEecCCCcEEEEEecCCCCCCceeEecccCC-
Q 005656           16 PLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA--NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHS-   92 (685)
Q Consensus        16 ~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~-   92 (685)
                      ..+|++-+.|.|++||..+++.+..++ +|...++.+.|..  ....+.+++.||+|++||+.......+..  ..+|. 
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk-~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~--~~~~~~  117 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFK-GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARIS--WTQQSG  117 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheec-CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhee--ccCCCC
Confidence            368999999999999999999999998 9999999999988  45689999999999999998875543332  33444 


Q ss_pred             CCCeEEEEecCCCEEEEEe----CCCceEEEEeecCce-eeEechhhHHHHHhhccccccccccCceeeeecccccccCC
Q 005656           93 APPLCIRFYANGRHILSAG----QDRAFRLFSVIQDQQ-SRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDW  167 (685)
Q Consensus        93 ~~v~~i~~~~~~~~l~s~s----~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (685)
                      .+..|++..-+++.+++|.    .|-.|.+||++..++ +..+.                                    
T Consensus       118 ~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~------------------------------------  161 (376)
T KOG1188|consen  118 TPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLN------------------------------------  161 (376)
T ss_pred             CcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhh------------------------------------
Confidence            4566666655666776664    366788999887665 22221                                    


Q ss_pred             cceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEcc-CCCEEEEEecCCcEEEEECCCCcccccccccccc
Q 005656          168 CNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSER  246 (685)
Q Consensus       168 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~  246 (685)
                                                     ..|...|+++.|+| +.+.|++|+.||-|.+||+.....-..+.     
T Consensus       162 -------------------------------eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~-----  205 (376)
T KOG1188|consen  162 -------------------------------ESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALL-----  205 (376)
T ss_pred             -------------------------------hhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHH-----
Confidence                                           16789999999999 55889999999999999997653322221     


Q ss_pred             ccCCCCcCEEEEEEcCCC-CEEEEEECCCeEEEEECCCCceEEEeecC-------------CceeEEEEeecCCEEEEEe
Q 005656          247 SNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRWEVG-------------CSLVKIVYHRVNGLLATVA  312 (685)
Q Consensus       247 ~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-------------~~i~~~~~~~~~~~l~~~~  312 (685)
                      ....|...|.++.|...+ +.|.+-+..++..+|+++.+.....+..+             ..+.......+....++++
T Consensus       206 ~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g  285 (376)
T KOG1188|consen  206 HVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAG  285 (376)
T ss_pred             HhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEec
Confidence            122677889999998876 46888889999999999988755444322             1111111122334555554


Q ss_pred             C-CCeEEEEEcC---C---CeeEEEEec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005656          313 D-DLVIRLFDVV---A---LRMVRKFEG-HTDRITDFCFSEDGKWLLSSGMDGSLRIWDV  364 (685)
Q Consensus       313 ~-dg~I~i~d~~---~---~~~~~~~~~-h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~  364 (685)
                      . -+...++-+.   +   .+.+..+.+ |..-|.++.|...+..+.||+.||.+.+|..
T Consensus       286 ~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  286 TDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             cccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence            4 4555554333   2   344556665 6777889999888899999999999999986

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=6.3e-20  Score=181.57  Aligned_cols=266  Identities=15%  Similarity=0.206  Sum_probs=194.3

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCC--------CeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEE
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEK--------RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKM   72 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~--------~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~i   72 (685)
                      |.+.|++++|.|-.. .|++++.||.|.+|++..        -+.+.+++ +|.++|.|++..+++..+++|+.||+|+.
T Consensus       293 ~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfr-aH~gPVl~v~v~~n~~~~ysgg~Dg~I~~  370 (577)
T KOG0642|consen  293 HDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFR-AHEGPVLCVVVPSNGEHCYSGGIDGTIRC  370 (577)
T ss_pred             chhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCccccceeeeEEEe-cccCceEEEEecCCceEEEeeccCceeee
Confidence            556788999999876 999999999999999932        34677888 99999999999999999999999999999


Q ss_pred             EEecCCC------CCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccc
Q 005656           73 WIFDTTD------GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKE  146 (685)
Q Consensus        73 Wd~~~~~------~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (685)
                      |++....      ....+...+.||...|+.+++++....|++++.||+++.|....... ..+...             
T Consensus       371 w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~-------------  436 (577)
T KOG0642|consen  371 WNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEP-------------  436 (577)
T ss_pred             eccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCc-------------
Confidence            9765321      11234456789999999999999988999999999999999765543 111100             


Q ss_pred             cccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCC-CEEEEEecCCc
Q 005656          147 EELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGGW  225 (685)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~  225 (685)
                                                                           ...+...++.+.... ...++....|.
T Consensus       437 -----------------------------------------------------~e~g~Plsvd~~ss~~a~~~~s~~~~~  463 (577)
T KOG0642|consen  437 -----------------------------------------------------KEHGYPLSVDRTSSRPAHSLASFRFGY  463 (577)
T ss_pred             -----------------------------------------------------cccCCcceEeeccchhHhhhhhccccc
Confidence                                                                 111222333333222 22233333333


Q ss_pred             EEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec-CCceeEEEEeec
Q 005656          226 IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV-GCSLVKIVYHRV  304 (685)
Q Consensus       226 i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~i~~~~~~~~  304 (685)
                      -.++++..+.....+..... ........+.-+.++|.+.+.+++..|+.|+++|..++.++..... ...++++++.|+
T Consensus       464 ~~~~~~ev~s~~~~~~s~~~-~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~n  542 (577)
T KOG0642|consen  464 TSIDDMEVVSDLLIFESSAS-PGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPN  542 (577)
T ss_pred             ccchhhhhhhheeeccccCC-CcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCC
Confidence            34444444433333321110 1112234577788899999999999999999999999998876654 488999999999


Q ss_pred             CCEEEEEeCCCeEEEEEcCCCeeEEEEecCCC
Q 005656          305 NGLLATVADDLVIRLFDVVALRMVRKFEGHTD  336 (685)
Q Consensus       305 ~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~  336 (685)
                      |.+|++++.|+.+++|.+....++.....|..
T Consensus       543 g~~l~s~s~d~sv~l~kld~k~~~~es~~~r~  574 (577)
T KOG0642|consen  543 GPYLMSGSHDGSVRLWKLDVKTCVLESTAHRK  574 (577)
T ss_pred             CceEEeecCCceeehhhccchheeeccccccc
Confidence            99999999999999999988888877766653

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.83  E-value=4.6e-19  Score=163.85  Aligned_cols=306  Identities=17%  Similarity=0.240  Sum_probs=219.9

Q ss_pred             EEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEE-EecCCCcEEEEEecCCCCCCceeE
Q 005656            8 LAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLM-SASADNSIKMWIFDTTDGDPRLLR   86 (685)
Q Consensus         8 l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~-s~s~D~~v~iWd~~~~~~~~~~~~   86 (685)
                      ++|||+|+ ++|+.+.- .+.|-|.++-+..+.+.  --+.|..+.|..|.-+++ ....|+.|.+|++...    .-..
T Consensus        14 c~fSp~g~-yiAs~~~y-rlviRd~~tlq~~qlf~--cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp----ew~c   85 (447)
T KOG4497|consen   14 CSFSPCGN-YIASLSRY-RLVIRDSETLQLHQLFL--CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP----EWYC   85 (447)
T ss_pred             eeECCCCC-eeeeeeee-EEEEeccchhhHHHHHH--HHHHhhheeeeccceeeeeeeeccceEEEEEeecc----eeEE
Confidence            57999999 99988754 78899988877666554  346788999999887555 4567899999999876    4445


Q ss_pred             ecccCCCCCeEEEEecCCCEEEE-EeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccccccc
Q 005656           87 FRSGHSAPPLCIRFYANGRHILS-AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRER  165 (685)
Q Consensus        87 ~~~~h~~~v~~i~~~~~~~~l~s-~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (685)
                      .+.....++.+++|+|||+.++. ..-|-.|.+|++.+.+....-                                   
T Consensus        86 kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~-----------------------------------  130 (447)
T KOG4497|consen   86 KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP-----------------------------------  130 (447)
T ss_pred             EeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec-----------------------------------
Confidence            55667888999999999976664 556889999998766532211                                   


Q ss_pred             CCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCC---cccccccc
Q 005656          166 DWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG---ISRGSYLD  242 (685)
Q Consensus       166 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~---~~~~~~~~  242 (685)
                                                        ..+..+..++|+|+|++.+..+.-.....+++.+.   ...+.+. 
T Consensus       131 ----------------------------------~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~-  175 (447)
T KOG4497|consen  131 ----------------------------------HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFK-  175 (447)
T ss_pred             ----------------------------------ccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcC-
Confidence                                              22445688999999999998876543333333221   1122221 


Q ss_pred             ccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEc
Q 005656          243 MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDV  322 (685)
Q Consensus       243 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~  322 (685)
                             -.+-..+++.|+|+|..+++         ||---.-.+..+..+-.+..+.|+|.+++|++|+.|+.+||.+-
T Consensus       176 -------~dT~DltgieWsPdg~~laV---------wd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh  239 (447)
T KOG4497|consen  176 -------LDTIDLTGIEWSPDGNWLAV---------WDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNH  239 (447)
T ss_pred             -------CCcccccCceECCCCcEEEE---------ecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhce
Confidence                   34456789999999987764         44322222223444567889999999999999999999988764


Q ss_pred             CCCeeEEEE------------------------------------------------------------e------cCCC
Q 005656          323 VALRMVRKF------------------------------------------------------------E------GHTD  336 (685)
Q Consensus       323 ~~~~~~~~~------------------------------------------------------------~------~h~~  336 (685)
                      -+.+...+|                                                            +      ...-
T Consensus       240 ~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~  319 (447)
T KOG4497|consen  240 FTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKC  319 (447)
T ss_pred             eeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCccc
Confidence            433222111                                                            0      0011


Q ss_pred             CeEEEEEcCCCCEEEEEe--CCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656          337 RITDFCFSEDGKWLLSSG--MDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRC  408 (685)
Q Consensus       337 ~I~~l~~spdg~~l~s~s--~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~  408 (685)
                      .+.-++||+|..+++|-.  .-+.+-+||+..-++...+....+|....|+|....|+.+.... .+|+|....
T Consensus       320 g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~s-rLY~W~psg  392 (447)
T KOG4497|consen  320 GAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKS-RLYFWAPSG  392 (447)
T ss_pred             ccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCc-eEEEEcCCC
Confidence            366789999999999875  34679999999988888888888999999999999888887665 899998554

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=1.2e-18  Score=183.61  Aligned_cols=289  Identities=19%  Similarity=0.323  Sum_probs=210.8

Q ss_pred             EEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecc--cccCeeEEEEeCC--CcEEEEecCCCcEEEEEecCCC-
Q 005656            5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREA--HDNAIISLHFFAN--EPVLMSASADNSIKMWIFDTTD-   79 (685)
Q Consensus         5 V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~--h~~~V~~l~~sp~--~~~l~s~s~D~~v~iWd~~~~~-   79 (685)
                      -..+.|+|-.. .++++...-.|+|||.+.++....+..+  ....|+.+.+-.+  ..++++|+.||.||||+--... 
T Consensus      1067 pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1067 PKTLKFHPFEP-QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred             CceeeecCCCc-eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence            34677888777 7888887788999999999988777632  2457999998764  4599999999999999643332 


Q ss_pred             CCCceeEecccCC-------CCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccC
Q 005656           80 GDPRLLRFRSGHS-------APPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK  152 (685)
Q Consensus        80 ~~~~~~~~~~~h~-------~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (685)
                      +.++++....+-.       +.=.-+.|-....+|+++|.-..|+|||.........+..                    
T Consensus      1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~-------------------- 1205 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPY-------------------- 1205 (1387)
T ss_pred             CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeeccc--------------------
Confidence            4455555443321       1123456777666788877789999999987776555432                    


Q ss_pred             ceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEc-cCCCEEEEEecCCcEEEEEC
Q 005656          153 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS-ACGNFAVLGTAGGWIERFNL  231 (685)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~g~~dg~i~~~d~  231 (685)
                                                                     +....++++.-+ ..|+.+++|..||.|++||.
T Consensus      1206 -----------------------------------------------~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~ 1238 (1387)
T KOG1517|consen 1206 -----------------------------------------------GSSTLVTALSADLVHGNIIAAGFADGSVRVYDR 1238 (1387)
T ss_pred             -----------------------------------------------CCCccceeecccccCCceEEEeecCCceEEeec
Confidence                                                           223445555443 34799999999999999998


Q ss_pred             CCCccccccccccccccCCCCcC--EEEEEEcCCCC-EEEEEECCCeEEEEECCCCceEEEe------ecCCceeEEEEe
Q 005656          232 QSGISRGSYLDMSERSNYAHNGE--VVGVACDSTNT-LMISAGYHGDIKVWDFKGRDLKSRW------EVGCSLVKIVYH  302 (685)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~------~~~~~i~~~~~~  302 (685)
                      +........     .....|+..  |..+.+.+.|- .+++|+.||.|++||++.......+      ..++..+++..|
T Consensus      1239 R~a~~ds~v-----~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH 1313 (1387)
T KOG1517|consen 1239 RMAPPDSLV-----CVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVH 1313 (1387)
T ss_pred             ccCCccccc-----eeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeec
Confidence            865442111     123377777  99999988774 4999999999999999974222211      123459999999


Q ss_pred             ecCCEEEEEeCCCeEEEEEcCCCeeEEEEec-------CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 005656          303 RVNGLLATVADDLVIRLFDVVALRMVRKFEG-------HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR  368 (685)
Q Consensus       303 ~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~-------h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~  368 (685)
                      ++...+|+|+. +.|+||++... .+..++.       ..+.+.+++|+|..-.+|+|+.|.+|.||......
T Consensus      1314 ~hapiiAsGs~-q~ikIy~~~G~-~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1314 EHAPIIASGSA-QLIKIYSLSGE-QLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             cCCCeeeecCc-ceEEEEecChh-hhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence            99999999998 99999998643 3333322       23568999999998899999999999999876543

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=8.1e-20  Score=180.79  Aligned_cols=270  Identities=21%  Similarity=0.338  Sum_probs=200.0

Q ss_pred             EEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecC----CCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCC
Q 005656           39 SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT----TDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR  114 (685)
Q Consensus        39 ~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~----~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg  114 (685)
                      .++. .|.+.|+.++|.|..+.|++++.||++++|++..    .....+.+.++.+|.+||.|+++.+++.++++||-||
T Consensus       288 ~tl~-s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg  366 (577)
T KOG0642|consen  288 FTLR-SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDG  366 (577)
T ss_pred             eeee-cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCc
Confidence            3454 7999999999999999999999999999999822    2344567888999999999999999999999999999


Q ss_pred             ceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCcee
Q 005656          115 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI  194 (685)
Q Consensus       115 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  194 (685)
                      +|+.|++.........                                                       ...   ...
T Consensus       367 ~I~~w~~p~n~dp~ds-------------------------------------------------------~dp---~vl  388 (577)
T KOG0642|consen  367 TIRCWNLPPNQDPDDS-------------------------------------------------------YDP---SVL  388 (577)
T ss_pred             eeeeeccCCCCCcccc-------------------------------------------------------cCc---chh
Confidence            9999987522111000                                                       000   001


Q ss_pred             ecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCC-CEEEEEECC
Q 005656          195 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYH  273 (685)
Q Consensus       195 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~d  273 (685)
                      .....+|...++.+++|+....|++++.||+++.|+...... ..|..      ..-.+.-..+.+-... ...++...-
T Consensus       389 ~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~------~~e~g~Plsvd~~ss~~a~~~~s~~~  461 (577)
T KOG0642|consen  389 SGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGE------PKEHGYPLSVDRTSSRPAHSLASFRF  461 (577)
T ss_pred             ccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCC------ccccCCcceEeeccchhHhhhhhccc
Confidence            112238889999999999999999999999999999887766 33321      0122233444443322 112222222


Q ss_pred             CeEEEEECCCCceEEEeecC--------CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcC
Q 005656          274 GDIKVWDFKGRDLKSRWEVG--------CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE  345 (685)
Q Consensus       274 g~i~iwd~~~~~~~~~~~~~--------~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp  345 (685)
                      +.--++++........+...        ..+..+..+|.+.+.+++..|+.|+++|..+++++.....|...++++++.|
T Consensus       462 ~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~  541 (577)
T KOG0642|consen  462 GYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDP  541 (577)
T ss_pred             ccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecC
Confidence            22333333333333333221        4577889999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeeEEe
Q 005656          346 DGKWLLSSGMDGSLRIWDVILARQIDAIH  374 (685)
Q Consensus       346 dg~~l~s~s~Dg~I~iwd~~~~~~i~~~~  374 (685)
                      +|-+|++++.||.+++|.+....++....
T Consensus       542 ng~~l~s~s~d~sv~l~kld~k~~~~es~  570 (577)
T KOG0642|consen  542 NGPYLMSGSHDGSVRLWKLDVKTCVLEST  570 (577)
T ss_pred             CCceEEeecCCceeehhhccchheeeccc
Confidence            99999999999999999998777665543

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=6.3e-19  Score=164.11  Aligned_cols=270  Identities=16%  Similarity=0.210  Sum_probs=202.4

Q ss_pred             cEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEec--CCCEEEEEeCCCceEEEEeecCceeeEechhhHH
Q 005656           59 PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA--NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVA  136 (685)
Q Consensus        59 ~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~  136 (685)
                      ..+|++-..|+|++||..++    ..+..+++|...++.++|..  ....+.+|+.||+|++||++.......+....  
T Consensus        41 ~~vav~lSngsv~lyd~~tg----~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~--  114 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTG----QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQ--  114 (376)
T ss_pred             eeEEEEecCCeEEEEeccch----hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccC--
Confidence            57888888999999999886    77888899999999999987  36688999999999999998776544332100  


Q ss_pred             HHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCE
Q 005656          137 KRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNF  216 (685)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  216 (685)
                                                                                     ....+..+++..-.++.
T Consensus       115 ---------------------------------------------------------------~~~~~f~~ld~nck~~i  131 (376)
T KOG1188|consen  115 ---------------------------------------------------------------QSGTPFICLDLNCKKNI  131 (376)
T ss_pred             ---------------------------------------------------------------CCCCcceEeeccCcCCe
Confidence                                                                           11345677777778888


Q ss_pred             EEEEec----CCcEEEEECCCCcc-ccccccccccccCCCCcCEEEEEEcCCC-CEEEEEECCCeEEEEECCCC----ce
Q 005656          217 AVLGTA----GGWIERFNLQSGIS-RGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGR----DL  286 (685)
Q Consensus       217 l~~g~~----dg~i~~~d~~~~~~-~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~----~~  286 (685)
                      +++|+.    +-.|.+||++..+. .+.+..       .|...|+++.|+|.+ +.|++||.||.|.+||++..    .+
T Consensus       132 i~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e-------SH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL  204 (376)
T KOG1188|consen  132 IACGTELTRSDASVVLWDVRSEQQLLRQLNE-------SHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDAL  204 (376)
T ss_pred             EEeccccccCceEEEEEEeccccchhhhhhh-------hccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhH
Confidence            888864    56799999998776 666543       899999999999965 78999999999999999754    35


Q ss_pred             EEEeecCCceeEEEEeecC-CEEEEEeCCCeEEEEEcCCCeeEEEEecCC------------CCeEEEEEcC-CCCEEEE
Q 005656          287 KSRWEVGCSLVKIVYHRVN-GLLATVADDLVIRLFDVVALRMVRKFEGHT------------DRITDFCFSE-DGKWLLS  352 (685)
Q Consensus       287 ~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~------------~~I~~l~~sp-dg~~l~s  352 (685)
                      ..++.+.+.|.++.|+.++ +.+.+-+...+..+|+++.+.....+....            ..+... .+| +....+.
T Consensus       205 ~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~~~~~~~~l  283 (376)
T KOG1188|consen  205 LHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE-HSPGDKDTCAL  283 (376)
T ss_pred             HHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec-ccCCCcceEEE
Confidence            5677778889999999887 368888889999999999887655544221            112222 223 4445555


Q ss_pred             EeC-CCcEEEEEcC---CC---ceeeEEeeccc--eEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656          353 SGM-DGSLRIWDVI---LA---RQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       353 ~s~-Dg~I~iwd~~---~~---~~i~~~~~~~~--v~~v~~spdg~~Lat~~~d~~~I~lW~~  406 (685)
                      ++. -|...++-+.   ++   +.+..+..+..  |+++.|...+.++.+|+.|| .+.+|.+
T Consensus       284 ~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG-~l~~Wk~  345 (376)
T KOG1188|consen  284 AGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDG-LLQAWKV  345 (376)
T ss_pred             eccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCc-eEEEEec
Confidence            544 5666666443   33   33344444332  99999999999999999998 9999974

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=1.5e-18  Score=163.65  Aligned_cols=289  Identities=15%  Similarity=0.203  Sum_probs=214.5

Q ss_pred             ccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCC--CCCCceeEec-ccCCCCCeEEEEecCCCEEEEEeCCCceEEEE
Q 005656           44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT--DGDPRLLRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFS  120 (685)
Q Consensus        44 ~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~--~~~~~~~~~~-~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd  120 (685)
                      +|.+.|.++.|+.++++|++|+.|..+++|+++..  ...++++... ..|...|.|++|...++++++|+.+++|...|
T Consensus        54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HD  133 (609)
T KOG4227|consen   54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHD  133 (609)
T ss_pred             hhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeee
Confidence            89999999999999999999999999999998643  1222333332 34568999999999999999999999999999


Q ss_pred             eecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCC
Q 005656          121 VIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE  200 (685)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  200 (685)
                      +++.+.+..+...                                                                  .
T Consensus       134 iEt~qsi~V~~~~------------------------------------------------------------------~  147 (609)
T KOG4227|consen  134 IETKQSIYVANEN------------------------------------------------------------------N  147 (609)
T ss_pred             cccceeeeeeccc------------------------------------------------------------------C
Confidence            9887765544211                                                                  3


Q ss_pred             CCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCC-CEEEEEECCCeEEEE
Q 005656          201 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVW  279 (685)
Q Consensus       201 ~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iw  279 (685)
                      ..+.|..+..+|..+.+++.+.+|.|.+||.+.........     ...........+.|+|.. .+|++.+..+.+-+|
T Consensus       148 ~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~-----~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~  222 (609)
T KOG4227|consen  148 NRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLV-----LPANSGKNFYTAEFHPETPALILVNSETGGPNVF  222 (609)
T ss_pred             cccceeecccCCCCceEEEEecCceEEEEeccCCCCCCcee-----eecCCCccceeeeecCCCceeEEeccccCCCCce
Confidence            45689999999999999999999999999998765322211     011233456788899865 577888888999999


Q ss_pred             ECCCCc-eEEEeec----C---CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCee-EEEEecCCC-------CeEEEEE
Q 005656          280 DFKGRD-LKSRWEV----G---CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM-VRKFEGHTD-------RITDFCF  343 (685)
Q Consensus       280 d~~~~~-~~~~~~~----~---~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~-~~~~~~h~~-------~I~~l~~  343 (685)
                      |.+... .+.....    .   ..-..+.|+|+|+.+.+--....-.+||+-+.++ +..+. |+.       .+.+++|
T Consensus       223 D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F  301 (609)
T KOG4227|consen  223 DRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD-HNPNGYCNIKTIKSMTF  301 (609)
T ss_pred             eeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc-CCCCcceeeeeeeeeee
Confidence            988542 1111111    1   2235688999999888776666777889887544 33333 332       4667888


Q ss_pred             cCCCCEEEEEeCCCcEEEEEcCCC-----------------------ceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCC
Q 005656          344 SEDGKWLLSSGMDGSLRIWDVILA-----------------------RQIDAIHVDVS-ITALSLSPNMDVLATAHVDQN  399 (685)
Q Consensus       344 spdg~~l~s~s~Dg~I~iwd~~~~-----------------------~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~  399 (685)
                      ..|- -+++|+.+-.|++|.++..                       ..+..+++|.. +..|.|+|...+|++.+... 
T Consensus       302 ~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~-  379 (609)
T KOG4227|consen  302 IDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVEN-  379 (609)
T ss_pred             ecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhh-
Confidence            7654 4999999999999998632                       12334556655 88999999999999998885 


Q ss_pred             eEEEEEc
Q 005656          400 GVYLWVN  406 (685)
Q Consensus       400 ~I~lW~~  406 (685)
                      .++||+.
T Consensus       380 ~~KlWS~  386 (609)
T KOG4227|consen  380 SFKLWSD  386 (609)
T ss_pred             heecccc
Confidence            9999974

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.82  E-value=2.3e-18  Score=179.85  Aligned_cols=285  Identities=14%  Similarity=0.171  Sum_probs=202.9

Q ss_pred             CcEEEEeCCCCeeeEEeecccccCeeEEEEeCCC-cEEEEecCCCcEEEEEecCCCCC--CceeEecccCCCCCeEEEEe
Q 005656           25 GVISIWNLEKRRLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGD--PRLLRFRSGHSAPPLCIRFY  101 (685)
Q Consensus        25 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~D~~v~iWd~~~~~~~--~~~~~~~~~h~~~v~~i~~~  101 (685)
                      +.+.||++.......... .-...|+|+.|+|.. .+++.|..+|.|.+||+..+...  ...-.....|..+++.+.|.
T Consensus       222 ~~~~vW~~~~p~~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~  300 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL  300 (555)
T ss_pred             ceEEEEecCCCCCceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence            579999998873322222 467899999999955 57788888999999999876542  22223345799999999998


Q ss_pred             cCC--CEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCce
Q 005656          102 ANG--RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQ  179 (685)
Q Consensus       102 ~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (685)
                      .+-  .-+++++.||.|+.|+++.-.............                                          
T Consensus       301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~------------------------------------------  338 (555)
T KOG1587|consen  301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKK------------------------------------------  338 (555)
T ss_pred             ccCCCCceEEEecCCcEeeeeccccccchhhccccccc------------------------------------------
Confidence            763  459999999999999875443322111000000                                          


Q ss_pred             EEEEEcCccccCceeecCCCCCCCCeEEEEEcc-CCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEE
Q 005656          180 AYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGV  258 (685)
Q Consensus       180 ~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l  258 (685)
                                   + ..........++++.|.+ +-+.+++|+..|.|+.-+-+..................|.++|+++
T Consensus       339 -------------~-~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v  404 (555)
T KOG1587|consen  339 -------------H-KGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAV  404 (555)
T ss_pred             -------------c-cccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEee
Confidence                         0 000013345678889888 5578999999999988544433332211111111233789999999


Q ss_pred             EEcCCCCEEEEEECCCeEEEEECC-CCceEEEeecC-CceeEEEEeecCC-EEEEEeCCCeEEEEEcCCC--eeEEEEec
Q 005656          259 ACDSTNTLMISAGYHGDIKVWDFK-GRDLKSRWEVG-CSLVKIVYHRVNG-LLATVADDLVIRLFDVVAL--RMVRKFEG  333 (685)
Q Consensus       259 ~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~-~~i~~~~~~~~~~-~l~~~~~dg~I~i~d~~~~--~~~~~~~~  333 (685)
                      .++|-+..++..+.|.++++|... ...++..+... ..+++++|||-.. .++++..||.|.+||+...  .++.+..-
T Consensus       405 ~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~  484 (555)
T KOG1587|consen  405 SRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKV  484 (555)
T ss_pred             ecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccc
Confidence            999988666655559999999987 66666665554 5599999999765 8888888999999999753  55666665


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005656          334 HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL  366 (685)
Q Consensus       334 h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~  366 (685)
                      +....+.+.|+++|+.|+.|...|++.+|++..
T Consensus       485 ~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  485 CSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             cccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            666778888999999999999999999999864

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=1.2e-17  Score=174.26  Aligned_cols=373  Identities=16%  Similarity=0.217  Sum_probs=241.9

Q ss_pred             EEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCc---EEEEecCCCcEEEEEecCCCCCCcee
Q 005656            9 AFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP---VLMSASADNSIKMWIFDTTDGDPRLL   85 (685)
Q Consensus         9 ~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~---~l~s~s~D~~v~iWd~~~~~~~~~~~   85 (685)
                      .||+|++ .++. ..+..|.||...++.++..+. +|..+++++.+.|...   ++++++.||.|++||+..+    .++
T Consensus        23 vfSnD~k-~l~~-~~~~~V~VyS~~Tg~~i~~l~-~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~----~Ll   95 (792)
T KOG1963|consen   23 VFSNDAK-FLFL-CTGNFVKVYSTATGECITSLE-DHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDG----ELL   95 (792)
T ss_pred             ccccCCc-EEEE-eeCCEEEEEecchHhhhhhcc-cccCccceeeecCCCccceEEEEEecCccEEEecCCCc----EEE
Confidence            5899998 4443 345789999999999999888 9999999999998654   7789999999999998776    666


Q ss_pred             EecccCCCCCeEEEEecC---CCEEEEEe-CCC-ceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656           86 RFRSGHSAPPLCIRFYAN---GRHILSAG-QDR-AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  160 (685)
Q Consensus        86 ~~~~~h~~~v~~i~~~~~---~~~l~s~s-~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (685)
                      +++.. ..++..+.+.|.   -..++..+ .|. .+.........+...+...........+.   .....+..+.+.. 
T Consensus        96 kt~~~-~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~---~~~~~~~~I~~~~-  170 (792)
T KOG1963|consen   96 KTFDN-NLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFL---KEHQEPKSIVDNN-  170 (792)
T ss_pred             EEEec-CCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhh---hhhcCCccEEEcC-
Confidence            66533 344555555331   11122122 111 11111111111111110000000000000   0000011111111 


Q ss_pred             cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCC-Cccccc
Q 005656          161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS-GISRGS  239 (685)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~-~~~~~~  239 (685)
                           .+  .+..-.-...+.+|.................|...+++.++||+++++++|..+|.|.+|.--. .....+
T Consensus       171 -----~g--e~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t  243 (792)
T KOG1963|consen  171 -----SG--EFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSET  243 (792)
T ss_pred             -----Cc--eEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccccc
Confidence                 01  1122222344566666653311111111224555689999999999999999999999996433 111111


Q ss_pred             cccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEE
Q 005656          240 YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRL  319 (685)
Q Consensus       240 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i  319 (685)
                           .....-|...|.+++|+++|.+|++||..|.+.+|.+.+++....-+.+++|..+.++||+.+.++...|+.|.+
T Consensus       244 -----~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~l  318 (792)
T KOG1963|consen  244 -----CTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHL  318 (792)
T ss_pred             -----ceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEE
Confidence                 112237889999999999999999999999999999999985555556799999999999999999999999999


Q ss_pred             EEcCCCeeEEEEecC-----------CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEee------------c
Q 005656          320 FDVVALRMVRKFEGH-----------TDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV------------D  376 (685)
Q Consensus       320 ~d~~~~~~~~~~~~h-----------~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~------------~  376 (685)
                      ....+.....++.|-           .+-.+.++++|.-+.++-.+..|.|.+||+.+.+.+..+..            +
T Consensus       319 i~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~  398 (792)
T KOG1963|consen  319 IKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQ  398 (792)
T ss_pred             EeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeE
Confidence            988766555444432           33467889999777888889999999999998877765532            2


Q ss_pred             cceEEEEEcCCCCeEEEEEe--------C-CCeEEEEE
Q 005656          377 VSITALSLSPNMDVLATAHV--------D-QNGVYLWV  405 (685)
Q Consensus       377 ~~v~~v~~spdg~~Lat~~~--------d-~~~I~lW~  405 (685)
                      -.+++++.+-.|.+++|.-.        | ...+++|.
T Consensus       399 v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~  436 (792)
T KOG1963|consen  399 VGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQ  436 (792)
T ss_pred             EeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEE
Confidence            23888999999999999743        2 23678895

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=1.8e-19  Score=192.74  Aligned_cols=247  Identities=14%  Similarity=0.212  Sum_probs=194.0

Q ss_pred             cEEEEEEccCCCC---EEEEEeCCCcEEEEeCCCC------eeeEEeecccccCeeEEEEeCCCc-EEEEecCCCcEEEE
Q 005656            4 AVTALAFSSDGQP---LLASGASSGVISIWNLEKR------RLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMW   73 (685)
Q Consensus         4 ~V~~l~fspdg~~---~latg~~dg~I~vwd~~~~------~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~D~~v~iW   73 (685)
                      .-+.++|.+.|..   +||.|..||.|.+||...-      ..+.+.. .|.+.|..+.|++.+. +||+|+.||.|.||
T Consensus        66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~-~h~G~V~gLDfN~~q~nlLASGa~~geI~iW  144 (1049)
T KOG0307|consen   66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKS-KHTGPVLGLDFNPFQGNLLASGADDGEILIW  144 (1049)
T ss_pred             cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhc-ccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence            4578899988874   6999999999999998652      2345555 8999999999999776 99999999999999


Q ss_pred             EecCCCCCCceeEecccCCCCCeEEEEecC-CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccC
Q 005656           74 IFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK  152 (685)
Q Consensus        74 d~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (685)
                      |+...+.....-  -......|.+++|+.. ...|++++.+|.+.|||++..+.+-.+...                   
T Consensus       145 Dlnn~~tP~~~~--~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~-------------------  203 (1049)
T KOG0307|consen  145 DLNKPETPFTPG--SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDT-------------------  203 (1049)
T ss_pred             ccCCcCCCCCCC--CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccC-------------------
Confidence            998754322221  1234678999999875 567788899999999999877654444210                   


Q ss_pred             ceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCC-CEEEEEecCC---cEEE
Q 005656          153 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGG---WIER  228 (685)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg---~i~~  228 (685)
                                                                     .....+..++|+|++ ..+++++.|.   .|.+
T Consensus       204 -----------------------------------------------~~~~~~S~l~WhP~~aTql~~As~dd~~Pviql  236 (1049)
T KOG0307|consen  204 -----------------------------------------------PGRMHCSVLAWHPDHATQLLVASGDDSAPVIQL  236 (1049)
T ss_pred             -----------------------------------------------CCccceeeeeeCCCCceeeeeecCCCCCceeEe
Confidence                                                           223457889999976 4556665543   6999


Q ss_pred             EECCCCccccccccccccccCCCCcCEEEEEEcCCC-CEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecCC
Q 005656          229 FNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNG  306 (685)
Q Consensus       229 ~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~  306 (685)
                      ||++.-......       ..+|...|.++.|++.+ +++++++.|+.|.+|+.++++.+..+... ..+..+.|+|..-
T Consensus       237 WDlR~assP~k~-------~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P  309 (1049)
T KOG0307|consen  237 WDLRFASSPLKI-------LEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNP  309 (1049)
T ss_pred             ecccccCCchhh-------hcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCc
Confidence            998765433222       23999999999999977 88999999999999999999999988764 7899999999877


Q ss_pred             -EEEEEeCCCeEEEEEcCCCe
Q 005656          307 -LLATVADDLVIRLFDVVALR  326 (685)
Q Consensus       307 -~l~~~~~dg~I~i~d~~~~~  326 (685)
                       .+++++-||.|.||.+.+..
T Consensus       310 ~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  310 SVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             chhhhheeccceeeeeeecCC
Confidence             89999999999999987653

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=1.4e-17  Score=147.91  Aligned_cols=286  Identities=15%  Similarity=0.163  Sum_probs=206.2

Q ss_pred             CeeEEEEeCCCcEEEEecCCCcEEEEEecCCC------CCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEe
Q 005656           48 AIISLHFFANEPVLMSASADNSIKMWIFDTTD------GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV  121 (685)
Q Consensus        48 ~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~------~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~  121 (685)
                      .|.+-+|+|.+++|+.|+.+|+|.+..+..-.      .....+....+|.++|..++|+.  .+|++|+ ||.|+-|..
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~g-dG~V~gw~W   88 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGG-DGLVYGWEW   88 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeecc-CceEEEeee
Confidence            46777899999999999999999999886431      11233444579999999999983  3777776 599999987


Q ss_pred             ecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCC
Q 005656          122 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN  201 (685)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  201 (685)
                      .........                                                 -.+|.........      ...
T Consensus        89 ~E~~es~~~-------------------------------------------------K~lwe~~~P~~~~------~~e  113 (325)
T KOG0649|consen   89 NEEEESLAT-------------------------------------------------KRLWEVKIPMQVD------AVE  113 (325)
T ss_pred             hhhhhhccc-------------------------------------------------hhhhhhcCccccC------ccc
Confidence            544321110                                                 1122211110000      022


Q ss_pred             CCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005656          202 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF  281 (685)
Q Consensus       202 ~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~  281 (685)
                      -..|.++.+.|..+-++.++.|+.++-||+.+|+....+.        +|+..|.++.--..+..+++|+.||++++||.
T Consensus       114 vPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r--------GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~  185 (325)
T KOG0649|consen  114 VPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR--------GHTDYVHSVVGRNANGQILSGAEDGTVRVWDT  185 (325)
T ss_pred             CCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc--------CCcceeeeeeecccCcceeecCCCccEEEEec
Confidence            3468899999988888888899999999999999998886        99999999998556667999999999999999


Q ss_pred             CCCceEEEeecC-----------CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEE
Q 005656          282 KGRDLKSRWEVG-----------CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWL  350 (685)
Q Consensus       282 ~~~~~~~~~~~~-----------~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l  350 (685)
                      ++++.+..+..-           ..|.++  .-+..++++|+ ...+.+|.+++.++...|. ..+++..+.|  +.+.+
T Consensus       186 kt~k~v~~ie~yk~~~~lRp~~g~wigal--a~~edWlvCGg-Gp~lslwhLrsse~t~vfp-ipa~v~~v~F--~~d~v  259 (325)
T KOG0649|consen  186 KTQKHVSMIEPYKNPNLLRPDWGKWIGAL--AVNEDWLVCGG-GPKLSLWHLRSSESTCVFP-IPARVHLVDF--VDDCV  259 (325)
T ss_pred             cccceeEEeccccChhhcCcccCceeEEE--eccCceEEecC-CCceeEEeccCCCceEEEe-cccceeEeee--ecceE
Confidence            999988776532           223333  34466777765 4579999999998888776 5567888889  45578


Q ss_pred             EEEeCCCcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656          351 LSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       351 ~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~~  406 (685)
                      ++++..+.|.-|.+. |.+...+...++ +++..|+..--.+++.....+.+.|+.+
T Consensus       260 l~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~~  315 (325)
T KOG0649|consen  260 LIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILKD  315 (325)
T ss_pred             EEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeeeeeec
Confidence            888888889999864 555555555554 7777776654444444445457888754

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.81  E-value=1.3e-18  Score=156.34  Aligned_cols=297  Identities=18%  Similarity=0.237  Sum_probs=196.3

Q ss_pred             eeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecc-cCCCCCeEEEEecCCCEEEEEeCCCc
Q 005656           37 LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS-GHSAPPLCIRFYANGRHILSAGQDRA  115 (685)
Q Consensus        37 ~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~s~s~dg~  115 (685)
                      +...++ +|.+.|+++.|-.+++ |.+|..-|.|++|++.+.    +.+..+. .|...|+.+.-.|+ ..+.+-+.|+.
T Consensus         6 P~fvLR-p~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~----r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~   78 (323)
T KOG0322|consen    6 PFFVLR-PHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTE----RDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPL   78 (323)
T ss_pred             CeeEec-cccchheehhhccchh-hhcccccceEEEEEeecC----ccchhhhhhccceeeceeecCC-cchhhcCCCce
Confidence            345666 8999999999998875 899999999999999887    4444445 57788999988887 57899999999


Q ss_pred             eEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceee
Q 005656          116 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL  195 (685)
Q Consensus       116 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  195 (685)
                      +.+|++..+.....-+...            ..                     +-+|.        +.+.         
T Consensus        79 L~lw~ia~s~~i~i~Si~~------------ns---------------------lgFCr--------fSl~---------  108 (323)
T KOG0322|consen   79 LILWTIAYSAFISIHSIVV------------NS---------------------LGFCR--------FSLV---------  108 (323)
T ss_pred             EEEEEccCcceEEEeeeec------------cc---------------------ccccc--------ceec---------
Confidence            9999987644332211000            00                     00000        0000         


Q ss_pred             cCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCC-CC--EEEEEEC
Q 005656          196 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-NT--LMISAGY  272 (685)
Q Consensus       196 ~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~--~l~s~s~  272 (685)
                          .......-..+.|+..     +  ..+++-|......+.....    ...+..+.+.+..+... +.  +++.|-.
T Consensus       109 ----~~~k~~eqll~yp~rg-----s--de~h~~D~g~~tqv~i~dd----~~~~Klgsvmc~~~~~~c~s~~lllaGyE  173 (323)
T KOG0322|consen  109 ----KKPKNSEQLLEYPSRG-----S--DETHKQDGGDTTQVQIADD----SERSKLGSVMCQDKDHACGSTFLLLAGYE  173 (323)
T ss_pred             ----cCCCcchhheecCCcc-----c--chhhhhccCccceeEccCc----hhccccCceeeeeccccccceEEEEEecc
Confidence                0000000111111100     0  0011122111111111110    11255677888775443 32  4566678


Q ss_pred             CCeEEEEECCCCceEEEe-----------ecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCC--ee--EEEEecCCCC
Q 005656          273 HGDIKVWDFKGRDLKSRW-----------EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL--RM--VRKFEGHTDR  337 (685)
Q Consensus       273 dg~i~iwd~~~~~~~~~~-----------~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~--~~--~~~~~~h~~~  337 (685)
                      +|.+.+||+.++..+..+           .+..++.++.|.+.-..=++|+.+..+..|.+...  .+  -..+.-.+-.
T Consensus       174 sghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpG  253 (323)
T KOG0322|consen  174 SGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPG  253 (323)
T ss_pred             CCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCC
Confidence            999999999987433322           23478899999877666677888888889887643  21  1222223345


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656          338 ITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       338 I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~~  406 (685)
                      |..+..-||++.+||++.|+.||||+.++..++..++.|+. |++++|+|+...+|+++.|+ .|.+|++
T Consensus       254 v~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~-rISLWkL  322 (323)
T KOG0322|consen  254 VSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDA-RISLWKL  322 (323)
T ss_pred             ccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCc-eEEeeec
Confidence            88899999999999999999999999999999999997776 99999999999999999998 9999974

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.81  E-value=1.2e-19  Score=186.51  Aligned_cols=281  Identities=19%  Similarity=0.271  Sum_probs=220.3

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG   80 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~   80 (685)
                      |...|.|+.|...|. ++++|+.|..++||..+++.+....+ ||.+.|+.++.+.+..+++++|.|..|++|.+..+  
T Consensus       189 H~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et~~~lAs~r-Ghs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~--  264 (1113)
T KOG0644|consen  189 HRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMETARCLASCR-GHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG--  264 (1113)
T ss_pred             hhhheeeeeeccccc-eEeecCccceeeeeeccchhhhccCC-CCccccchhccchhhhhhhhcccCceEEEEecCCC--
Confidence            778999999999998 99999999999999999999999999 99999999999999999999999999999988877  


Q ss_pred             CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656           81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  160 (685)
Q Consensus        81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (685)
                        .++..+.||.+.|++|+|+|-.    +.+.||++++||.+-....  +.                             
T Consensus       265 --~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~--y~-----------------------------  307 (1113)
T KOG0644|consen  265 --APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRI--YV-----------------------------  307 (1113)
T ss_pred             --chHHHHhccccceeeeccCccc----cCCCCCceEeccccccccc--cC-----------------------------
Confidence              7788889999999999999964    7788999999998611100  00                             


Q ss_pred             cccccCCcceEEEEcCCceEEEEEcCccccCceeecCC-CCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccc
Q 005656          161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC-PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGS  239 (685)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~  239 (685)
                                                        ..+. .....-+.++.+-..+.-+++|+.++.-..|.+..-.    
T Consensus       308 ----------------------------------prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~----  349 (1113)
T KOG0644|consen  308 ----------------------------------PRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA----  349 (1113)
T ss_pred             ----------------------------------CCCCCcccccceeeeeccccccccccccCCcccccchhhHhh----
Confidence                                              0000 0223456677777788889999999887777554221    


Q ss_pred             cccccccccCCCCcCEEEEEEcCC-CCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecCC-EEEEEeCCCe
Q 005656          240 YLDMSERSNYAHNGEVVGVACDST-NTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNG-LLATVADDLV  316 (685)
Q Consensus       240 ~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~-~l~~~~~dg~  316 (685)
                                .+...+.-+..+.+ +.+.+++-.+-.+.+|++.++.+.+....+ ..+..+.++|-+. ...+++.||.
T Consensus       350 ----------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgs  419 (1113)
T KOG0644|consen  350 ----------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGS  419 (1113)
T ss_pred             ----------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCc
Confidence                      22222222222222 245667777888999999999888766654 7888899999776 4557889999


Q ss_pred             EEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcee
Q 005656          317 IRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI  370 (685)
Q Consensus       317 I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i  370 (685)
                      ..|||+-.|.+++...-..+.+.+.+||+||..++....-|.++|.....++..
T Consensus       420 t~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~  473 (1113)
T KOG0644|consen  420 TIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQ  473 (1113)
T ss_pred             eEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCccc
Confidence            999999999877765533566778899999999998888899999987665543

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.80  E-value=1.2e-19  Score=186.47  Aligned_cols=281  Identities=17%  Similarity=0.268  Sum_probs=219.5

Q ss_pred             eEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceE
Q 005656           38 QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFR  117 (685)
Q Consensus        38 ~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~  117 (685)
                      +..+. +|..+|+|+.|...|.++++|+.|..++||..++.    .++....||.+.|+.++.+.+...+++++.|..|+
T Consensus       183 ikrLl-gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~----~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIr  257 (1113)
T KOG0644|consen  183 IKRLL-GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA----RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIR  257 (1113)
T ss_pred             HHHHH-hhhhheeeeeeccccceEeecCccceeeeeeccch----hhhccCCCCccccchhccchhhhhhhhcccCceEE
Confidence            34455 89999999999999999999999999999998877    88899999999999999999999999999999999


Q ss_pred             EEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecC
Q 005656          118 LFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRP  197 (685)
Q Consensus       118 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  197 (685)
                      +|.+.++..+..+.                                                                  
T Consensus       258 vWrl~~~~pvsvLr------------------------------------------------------------------  271 (1113)
T KOG0644|consen  258 VWRLPDGAPVSVLR------------------------------------------------------------------  271 (1113)
T ss_pred             EEecCCCchHHHHh------------------------------------------------------------------
Confidence            99998876554432                                                                  


Q ss_pred             CCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEE
Q 005656          198 CPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIK  277 (685)
Q Consensus       198 ~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~  277 (685)
                        +|.+.|++++|+|-.    +.+.||++++||.+-. .+ .+..  .........-+.++.+...+..+.|++.|+.-.
T Consensus       272 --ghtgavtaiafsP~~----sss~dgt~~~wd~r~~-~~-~y~p--rp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~  341 (1113)
T KOG0644|consen  272 --GHTGAVTAIAFSPRA----SSSDDGTCRIWDARLE-PR-IYVP--RPLKFTEKDLVDSILFENNGDRFLTGSRDGEAR  341 (1113)
T ss_pred             --ccccceeeeccCccc----cCCCCCceEecccccc-cc-ccCC--CCCCcccccceeeeeccccccccccccCCcccc
Confidence              789999999999965    7788999999998711 11 1111  111113345677788888888999999999988


Q ss_pred             EEECCCCceEEEeecCCceeEEEEeec-CCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCC-CEEEEEeC
Q 005656          278 VWDFKGRDLKSRWEVGCSLVKIVYHRV-NGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDG-KWLLSSGM  355 (685)
Q Consensus       278 iwd~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg-~~l~s~s~  355 (685)
                      .|.+.......     ..+.-+..+.+ +.+.+++-.+..+.+|++.+|...+.+.+|...+..+.++|-+ +...+++.
T Consensus       342 n~e~~~l~~~~-----~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~  416 (1113)
T KOG0644|consen  342 NHEFEQLAWRS-----NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGY  416 (1113)
T ss_pred             cchhhHhhhhc-----cceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccC
Confidence            88765321110     00111111112 2466677778899999999999999999999999999999955 45568999


Q ss_pred             CCcEEEEEcCCCceeeEEe-eccceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656          356 DGSLRIWDVILARQIDAIH-VDVSITALSLSPNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       356 Dg~I~iwd~~~~~~i~~~~-~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~  405 (685)
                      ||...|||+-.|.+++.+. .+..+....||+||..++....-| .++|..
T Consensus       417 dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hg-ql~i~g  466 (1113)
T KOG0644|consen  417 DGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHG-QLYILG  466 (1113)
T ss_pred             CCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCC-ceEEec
Confidence            9999999999998887765 455688899999999888876554 788874

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.79  E-value=1.3e-17  Score=163.78  Aligned_cols=263  Identities=19%  Similarity=0.250  Sum_probs=187.2

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCee-EEEEeC-------CCcEEEEecCCCcEEE
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAII-SLHFFA-------NEPVLMSASADNSIKM   72 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~-~l~~sp-------~~~~l~s~s~D~~v~i   72 (685)
                      |...|.|+.|+.... ++.++ .|..+.+|.-.+......+. -...-|. .+..-+       ....++.++.||.+.+
T Consensus        13 ~~e~vc~v~w~~~ee-i~~~~-dDh~~~~~~~~~~~s~~~~~-~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~i   89 (737)
T KOG1524|consen   13 NSEKVCCVDWSSNEE-IYFVS-DDHQIFKWSDVSRDSVEVAK-LPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVI   89 (737)
T ss_pred             cceeEEeecccccce-EEEec-cCceEEEeecccchhhhhhh-CCcccCCccccccccccCCCCCcceEEEEcCCceEEE
Confidence            456788999998877 55554 56666666544433222222 1111111 111111       2237888889999888


Q ss_pred             EEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccC
Q 005656           73 WIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK  152 (685)
Q Consensus        73 Wd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (685)
                      -+-..     +.-+....|.+.+.+-.|+|||.-|+++|.||.|++|+-. +-....+                      
T Consensus        90 l~k~~-----rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRStl----------------------  141 (737)
T KOG1524|consen   90 LNKSA-----RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRSTV----------------------  141 (737)
T ss_pred             ecccc-----hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHHHH----------------------
Confidence            74322     5666778999999999999999999999999999999742 2111111                      


Q ss_pred             ceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECC
Q 005656          153 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ  232 (685)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~  232 (685)
                                                                    .....+|.|++|.|+.+.++.+ ..|.+.+-.++
T Consensus       142 ----------------------------------------------~Q~~~~v~c~~W~p~S~~vl~c-~g~h~~IKpL~  174 (737)
T KOG1524|consen  142 ----------------------------------------------VQNEESIRCARWAPNSNSIVFC-QGGHISIKPLA  174 (737)
T ss_pred             ----------------------------------------------hhcCceeEEEEECCCCCceEEe-cCCeEEEeecc
Confidence                                                          0346789999999998876654 44567776666


Q ss_pred             CCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEe
Q 005656          233 SGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVA  312 (685)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  312 (685)
                      .........        +|.+-|.++.|++.+..+++||.|-..++||-....+...-.+..+|++++|.|+ ..+++++
T Consensus       175 ~n~k~i~Wk--------AHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S  245 (737)
T KOG1524|consen  175 ANSKIIRWR--------AHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWS  245 (737)
T ss_pred             cccceeEEe--------ccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cceeeee
Confidence            554444333        9999999999999999999999999999999887777767777799999999999 6666665


Q ss_pred             CCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005656          313 DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIW  362 (685)
Q Consensus       313 ~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iw  362 (685)
                      .+ +.+           --+...+.|..++||+||..++.|...|.+.+=
T Consensus       246 ~n-t~R-----------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  246 YN-TAR-----------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIVA  283 (737)
T ss_pred             ee-eee-----------ecCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence            32 333           112356789999999999999999988876553

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.78  E-value=2.9e-16  Score=160.10  Aligned_cols=315  Identities=12%  Similarity=0.093  Sum_probs=208.3

Q ss_pred             EEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeE
Q 005656           18 LASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLC   97 (685)
Q Consensus        18 latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~   97 (685)
                      +++-..+|.|.|.|..+.+.+..+.. ....-..+.|+|||+++++++.||.|.++|+.+.    +.+..... .....+
T Consensus         9 ~V~~~~~~~v~viD~~t~~~~~~i~~-~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~----~~v~~i~~-G~~~~~   82 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGATNKVVARIPT-GGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATG----KVVATIKV-GGNPRG   82 (369)
T ss_dssp             EEEEGGGTEEEEEETTT-SEEEEEE--STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSS----SEEEEEE--SSEEEE
T ss_pred             EEEecCCCEEEEEECCCCeEEEEEcC-CCCceeEEEecCCCCEEEEEcCCCeEEEEECCcc----cEEEEEec-CCCcce
Confidence            34556789999999999999999983 3333455789999999999999999999999887    66666544 334688


Q ss_pred             EEEecCCCEEEEEe-CCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcC
Q 005656           98 IRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMD  176 (685)
Q Consensus        98 i~~~~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (685)
                      +++++||+++++++ .++.+.++|..+.+..+.+......                                        
T Consensus        83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~----------------------------------------  122 (369)
T PF02239_consen   83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMP----------------------------------------  122 (369)
T ss_dssp             EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-----------------------------------------
T ss_pred             EEEcCCCCEEEEEecCCCceeEeccccccceeeccccccc----------------------------------------
Confidence            99999999999776 5899999999988877776432110                                        


Q ss_pred             CceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEE-ecCCcEEEEECCCCccccccccccccccCCCCcCE
Q 005656          177 TAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEV  255 (685)
Q Consensus       177 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v  255 (685)
                                           .......+.++..+|.+..+++. -..+.|.+.|.........-.       .......
T Consensus       123 ---------------------~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~-------i~~g~~~  174 (369)
T PF02239_consen  123 ---------------------VDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTT-------IKVGRFP  174 (369)
T ss_dssp             ---------------------TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEE-------EE--TTE
T ss_pred             ---------------------ccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceee-------ecccccc
Confidence                                 00124567778888888855554 556899999987653322110       0233456


Q ss_pred             EEEEEcCCCCEEEEEE-CCCeEEEEECCCCceEEEeecC-----CceeEEEEeecC----------CEEEEEeCCCeEEE
Q 005656          256 VGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWEVG-----CSLVKIVYHRVN----------GLLATVADDLVIRL  319 (685)
Q Consensus       256 ~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~-----~~i~~~~~~~~~----------~~l~~~~~dg~I~i  319 (685)
                      ....|+|++++++.+. .+..|-++|..+++....+...     .+...+ .+|..          ...++.-....+.+
T Consensus       175 ~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v  253 (369)
T PF02239_consen  175 HDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSV  253 (369)
T ss_dssp             EEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-
T ss_pred             cccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCcccc
Confidence            7889999999877654 6679999999998887766432     222222 22322          22222222345667


Q ss_pred             EEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE----eCCCcEEEEEcCCCceeeEEeeccc--eEEEEEcCCCCeEEE
Q 005656          320 FDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS----GMDGSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLAT  393 (685)
Q Consensus       320 ~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~----s~Dg~I~iwd~~~~~~i~~~~~~~~--v~~v~~spdg~~Lat  393 (685)
                      ||..+.+.++++....+. ..+..+|+++++.+.    ...++|.++|..+.+.+..+.....  +..+.|++||+.+..
T Consensus       254 ~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~v  332 (369)
T PF02239_consen  254 HDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWV  332 (369)
T ss_dssp             STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEE
T ss_pred             chhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEE
Confidence            899999999999977666 788899999999988    4558899999999988888765444  999999999999999


Q ss_pred             EEeCCC-eEEEEEcCC
Q 005656          394 AHVDQN-GVYLWVNRC  408 (685)
Q Consensus       394 ~~~d~~-~I~lW~~~~  408 (685)
                      +..+++ .|.+||...
T Consensus       333 S~~~~~~~i~v~D~~T  348 (369)
T PF02239_consen  333 SVWDGNGAIVVYDAKT  348 (369)
T ss_dssp             EEE--TTEEEEEETTT
T ss_pred             EEecCCCEEEEEECCC
Confidence            888877 899998654

...

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=3.8e-16  Score=138.83  Aligned_cols=279  Identities=14%  Similarity=0.198  Sum_probs=199.4

Q ss_pred             EEEEEEccCCCCEEEEEeCCCcEEEEeCCC---------Cee-eEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEE
Q 005656            5 VTALAFSSDGQPLLASGASSGVISIWNLEK---------RRL-QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI   74 (685)
Q Consensus         5 V~~l~fspdg~~~latg~~dg~I~vwd~~~---------~~~-~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd   74 (685)
                      |.+-+++|.++ +|++|..+|.|.+..+++         ++. +...+ +|+++|+.++|.  ..+|++++ ||.|+-|.
T Consensus        13 vf~qa~sp~~~-~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eq-ahdgpiy~~~f~--d~~Lls~g-dG~V~gw~   87 (325)
T KOG0649|consen   13 VFAQAISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQ-AHDGPIYYLAFH--DDFLLSGG-DGLVYGWE   87 (325)
T ss_pred             HHHHhhCCcce-EEEEecCCCeEEEEEehhhhccccCCCCCcceeecc-ccCCCeeeeeee--hhheeecc-CceEEEee
Confidence            44567999999 999999999999998863         222 33334 999999999998  44777775 59999998


Q ss_pred             ecCCCCC---CceeEe-cc-----cCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccc
Q 005656           75 FDTTDGD---PRLLRF-RS-----GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK  145 (685)
Q Consensus        75 ~~~~~~~---~~~~~~-~~-----~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  145 (685)
                      +......   .++... ..     ..-..|+++...|..+-++.++.|+.+.-||+++++..+++.              
T Consensus        88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r--------------  153 (325)
T KOG0649|consen   88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR--------------  153 (325)
T ss_pred             ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc--------------
Confidence            7654221   011110 11     123468899999988888888899999999999998877775              


Q ss_pred             ccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCc
Q 005656          146 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGW  225 (685)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~  225 (685)
                                                                            +|...+.++..-.....+++|+.||+
T Consensus       154 ------------------------------------------------------GHtDYvH~vv~R~~~~qilsG~EDGt  179 (325)
T KOG0649|consen  154 ------------------------------------------------------GHTDYVHSVVGRNANGQILSGAEDGT  179 (325)
T ss_pred             ------------------------------------------------------CCcceeeeeeecccCcceeecCCCcc
Confidence                                                                  78889999998777778999999999


Q ss_pred             EEEEECCCCccccccccccccc-cCCCC-cCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEee
Q 005656          226 IERFNLQSGISRGSYLDMSERS-NYAHN-GEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHR  303 (685)
Q Consensus       226 i~~~d~~~~~~~~~~~~~~~~~-~~~h~-~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~  303 (685)
                      +++||.+++++...+....... ...|. ..|-+++.+  ..+++.|+ ...+.+|.++..+....+..++++..+.|. 
T Consensus       180 vRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGg-Gp~lslwhLrsse~t~vfpipa~v~~v~F~-  255 (325)
T KOG0649|consen  180 VRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGG-GPKLSLWHLRSSESTCVFPIPARVHLVDFV-  255 (325)
T ss_pred             EEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEecC-CCceeEEeccCCCceEEEecccceeEeeee-
Confidence            9999999999887765332211 12333 346677654  44666554 578999999999999999999999999987 


Q ss_pred             cCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEE
Q 005656          304 VNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSED-GKWLLSSGMDGSLRIW  362 (685)
Q Consensus       304 ~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spd-g~~l~s~s~Dg~I~iw  362 (685)
                       ...+++++..+.|.-|.+. |..-..........+...|+.. -++|-.++..+.+.|+
T Consensus       256 -~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  256 -DDCVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             -cceEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence             4577778877888888764 3333333333333444555332 2445555666666665

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.78  E-value=2.7e-17  Score=149.68  Aligned_cols=272  Identities=16%  Similarity=0.237  Sum_probs=197.2

Q ss_pred             CCCcEEEEeCCC--CeeeEEeecccccCeeEEEEeCCC-cEEEEecCC-------CcEEEEEecCCCCC-----CceeEe
Q 005656           23 SSGVISIWNLEK--RRLQSVIREAHDNAIISLHFFANE-PVLMSASAD-------NSIKMWIFDTTDGD-----PRLLRF   87 (685)
Q Consensus        23 ~dg~I~vwd~~~--~~~~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~D-------~~v~iWd~~~~~~~-----~~~~~~   87 (685)
                      .|+.|.+.+++.  +.+.......|.+.|..++-+|-. ++|+|+-.+       ..+.||.+...-+.     ..++..
T Consensus        38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~  117 (370)
T KOG1007|consen   38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS  117 (370)
T ss_pred             CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence            567788777655  334333333788999999999955 466665442       24679988765332     233333


Q ss_pred             cc-cCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCce-eeEechhhHHHHHhhccccccccccCceeeeeccccccc
Q 005656           88 RS-GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ-SRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRER  165 (685)
Q Consensus        88 ~~-~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (685)
                      +. .+-+.|.|+.|.|++..+++.. |..|.+|++..+.. ...+...                                
T Consensus       118 Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss--------------------------------  164 (370)
T KOG1007|consen  118 LDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSS--------------------------------  164 (370)
T ss_pred             CCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeeccc--------------------------------
Confidence            33 4566899999999999988876 88899999987654 2222100                                


Q ss_pred             CCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEcc--CCCEEEEEecCCcEEEEECCCCccccccccc
Q 005656          166 DWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA--CGNFAVLGTAGGWIERFNLQSGISRGSYLDM  243 (685)
Q Consensus       166 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~  243 (685)
                                                     ....+....++-+|+|  +|+.+++ ..++++..||+++......+.. 
T Consensus       165 -------------------------------~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~~~sI~d-  211 (370)
T KOG1007|consen  165 -------------------------------ESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKKNNSIED-  211 (370)
T ss_pred             -------------------------------ccccccceecccccCCCCccceEEE-eCCCcEEEEEccchhhhcchhh-
Confidence                                           0002345567778888  5665554 5678999999998877776654 


Q ss_pred             cccccCCCCcCEEEEEEcCCCC-EEEEEECCCeEEEEECCCC-ceEEEeecC-CceeEEEEeecCC-EEEEEeCCCeEEE
Q 005656          244 SERSNYAHNGEVVGVACDSTNT-LMISAGYHGDIKVWDFKGR-DLKSRWEVG-CSLVKIVYHRVNG-LLATVADDLVIRL  319 (685)
Q Consensus       244 ~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~-~~~~~~~~~-~~i~~~~~~~~~~-~l~~~~~dg~I~i  319 (685)
                            +|...|+.+.|+|+.+ +|++|+.||.|++||.+.. .++..+..+ ..+.++.|+|.-. ++++|+.|..|.+
T Consensus       212 ------AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~L  285 (370)
T KOG1007|consen  212 ------AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNL  285 (370)
T ss_pred             ------hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEE
Confidence                  8999999999999875 6789999999999999854 456666554 7899999999754 8889999999999


Q ss_pred             EEcCC-----------------------------CeeEEEEecCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEEcCC
Q 005656          320 FDVVA-----------------------------LRMVRKFEGHTDRITDFCFSEDGKWL-LSSGMDGSLRIWDVIL  366 (685)
Q Consensus       320 ~d~~~-----------------------------~~~~~~~~~h~~~I~~l~~spdg~~l-~s~s~Dg~I~iwd~~~  366 (685)
                      |...+                             ...+.++..|...|++++||.-..|+ |+-|.||.+.|=.++.
T Consensus       286 sca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  286 SCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             EeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence            86432                             01244677899999999999866654 5779999998877654

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=2.5e-18  Score=167.17  Aligned_cols=301  Identities=15%  Similarity=0.223  Sum_probs=228.5

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCC--CcEEEEecCCCcEEEEEecCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN--EPVLMSASADNSIKMWIFDTT   78 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~--~~~l~s~s~D~~v~iWd~~~~   78 (685)
                      |.|.|+.|.|...|. +|++|+.|..|.+||+..+.....+..+|...|....|.|.  .+.+++++.||.|++=.+...
T Consensus       141 H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t  219 (559)
T KOG1334|consen  141 HKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILET  219 (559)
T ss_pred             CCCccceeeecccCc-eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccc
Confidence            889999999999999 99999999999999999999999988899999999999984  458999999999999877654


Q ss_pred             CCCCceeEecccCCCCCeEEEEecCC-CEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeee
Q 005656           79 DGDPRLLRFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF  157 (685)
Q Consensus        79 ~~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (685)
                      .. ..-...+..|.++|..++.-|+. .-|++++.|+.+.-+|++.+.....+.                          
T Consensus       220 ~~-~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~--------------------------  272 (559)
T KOG1334|consen  220 GY-VENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV--------------------------  272 (559)
T ss_pred             cc-eecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee--------------------------
Confidence            32 22234556899999999999974 568899999999999987765433321                          


Q ss_pred             ecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEECCCCcc
Q 005656          158 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGGWIERFNLQSGIS  236 (685)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~~~d~~~~~~  236 (685)
                                     |...+.                     ...-....++..|.. +.+++|+.+-.+++||.+.-..
T Consensus       273 ---------------cr~~~~---------------------~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~  316 (559)
T KOG1334|consen  273 ---------------CREADE---------------------KERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDK  316 (559)
T ss_pred             ---------------eeccCC---------------------ccceeeeeEecCCCCccccccCChhhhhhhhcccchhh
Confidence                           111000                     111245677888855 4889999999999999875332


Q ss_pred             c------cccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCC--C----------ceEEE-eecC---C
Q 005656          237 R------GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG--R----------DLKSR-WEVG---C  294 (685)
Q Consensus       237 ~------~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~--~----------~~~~~-~~~~---~  294 (685)
                      .      ..+......  ......|+|++++.++.-+.++-.|-.|+++.-.-  |          ..... +..+   .
T Consensus       317 e~~n~~~~~f~p~hl~--~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~  394 (559)
T KOG1334|consen  317 EENNGVLDKFCPHHLV--EDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSR  394 (559)
T ss_pred             ccccchhhhcCCcccc--ccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhccccccc
Confidence            2      222110000  02345799999998887777777888899995332  2          11111 3333   3


Q ss_pred             ceeEEEE-eecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005656          295 SLVKIVY-HRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA  367 (685)
Q Consensus       295 ~i~~~~~-~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~  367 (685)
                      .|..+-| -|...++++|++-|.|.||+-.+++.++.+.+-..-|+|+.-+|--..||+++-|..|+||.-.+.
T Consensus       395 TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~  468 (559)
T KOG1334|consen  395 TVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTA  468 (559)
T ss_pred             ccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCcc
Confidence            3555554 577889999999999999999999999999987779999999999999999999999999986443

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.78  E-value=1.7e-17  Score=157.29  Aligned_cols=225  Identities=13%  Similarity=0.188  Sum_probs=170.4

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCC-------eeeEEeecccccCeeEEEEeCCC-cEEEEecCCCcEEE
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR-------RLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKM   72 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~-------~~~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~D~~v~i   72 (685)
                      |+++|..++|+|-....+|+|+.|.+|.||.+..+       +.+..+. +|...|..++|+|.- +.|+|++.|++|.+
T Consensus        80 Ht~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~-gH~rrVg~V~wHPtA~NVLlsag~Dn~v~i  158 (472)
T KOG0303|consen   80 HTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELY-GHQRRVGLVQWHPTAPNVLLSAGSDNTVSI  158 (472)
T ss_pred             ccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEe-ecceeEEEEeecccchhhHhhccCCceEEE
Confidence            89999999999988779999999999999998764       3355666 999999999999964 58999999999999


Q ss_pred             EEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccC
Q 005656           73 WIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK  152 (685)
Q Consensus        73 Wd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (685)
                      |++.++    ..+..+. |...|.++.|+.||.+|++++.|..|||||.++++.+.+-..                    
T Consensus       159 Wnv~tg----eali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~--------------------  213 (472)
T KOG0303|consen  159 WNVGTG----EALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVA--------------------  213 (472)
T ss_pred             EeccCC----ceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeeccc--------------------
Confidence            999988    4444554 999999999999999999999999999999998876655411                    


Q ss_pred             ceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe---cCCcEEEE
Q 005656          153 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT---AGGWIERF  229 (685)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~---~dg~i~~~  229 (685)
                                                                     ........+.|-.+|..+.+|.   ++..+.+|
T Consensus       214 -----------------------------------------------heG~k~~Raifl~~g~i~tTGfsr~seRq~aLw  246 (472)
T KOG0303|consen  214 -----------------------------------------------HEGAKPARAIFLASGKIFTTGFSRMSERQIALW  246 (472)
T ss_pred             -----------------------------------------------ccCCCcceeEEeccCceeeeccccccccceecc
Confidence                                                           1122334455666777666664   35688899


Q ss_pred             ECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCce----EEEeecCCceeEEEEeec
Q 005656          230 NLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDL----KSRWEVGCSLVKIVYHRV  304 (685)
Q Consensus       230 d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~----~~~~~~~~~i~~~~~~~~  304 (685)
                      |..+-.....+.      ....+..|.---|+++...++.+| .|+.|+.|.+....+    +.++....+-..+.|-|.
T Consensus       247 dp~nl~eP~~~~------elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPK  320 (472)
T KOG0303|consen  247 DPNNLEEPIALQ------ELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPK  320 (472)
T ss_pred             CcccccCcceeE------EeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccccccccc
Confidence            877654433321      113456677778899988887766 799999999987653    333444455555555554

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=2.6e-18  Score=167.04  Aligned_cols=294  Identities=19%  Similarity=0.333  Sum_probs=228.6

Q ss_pred             eEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecC--CCEEEEEeCCCc
Q 005656           38 QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--GRHILSAGQDRA  115 (685)
Q Consensus        38 ~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~--~~~l~s~s~dg~  115 (685)
                      ...+. .|.+.|..+.|+..|..|++||.|..|.+||+....   ..+....||...|....|.|.  ...+++++.||.
T Consensus       135 ~~kL~-~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~---~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq  210 (559)
T KOG1334|consen  135 QKKLN-KHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS---PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ  210 (559)
T ss_pred             hhccc-CCCCccceeeecccCceeeccCccceEEeehhhccC---cccccccccccchhhhhccCCCCCcCceeccccCc
Confidence            34454 899999999999999999999999999999998775   556777899999999999985  568999999999


Q ss_pred             eEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceee
Q 005656          116 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL  195 (685)
Q Consensus       116 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  195 (685)
                      +++=.+.........                                                                 
T Consensus       211 vr~s~i~~t~~~e~t-----------------------------------------------------------------  225 (559)
T KOG1334|consen  211 VRVSEILETGYVENT-----------------------------------------------------------------  225 (559)
T ss_pred             eeeeeeccccceecc-----------------------------------------------------------------
Confidence            998766433221100                                                                 


Q ss_pred             cCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEECCCCccccccccccccccCCCCc---CEEEEEEcCCCC-EEEEE
Q 005656          196 RPCPENPTAVKACTISACG-NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNG---EVVGVACDSTNT-LMISA  270 (685)
Q Consensus       196 ~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~~~~~-~l~s~  270 (685)
                      .....|.++|..+++-|+. ..+.+++.|+.+.-+|++.+.....+.     ....+..   ....++.+|.+. .++++
T Consensus       226 ~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~-----cr~~~~~~~v~L~~Ia~~P~nt~~faVg  300 (559)
T KOG1334|consen  226 KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV-----CREADEKERVGLYTIAVDPRNTNEFAVG  300 (559)
T ss_pred             eecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee-----eeccCCccceeeeeEecCCCCccccccC
Confidence            0011667888888888865 557888999999999999887665553     1113333   678899999775 78999


Q ss_pred             ECCCeEEEEECCCCceE------EEe-------ecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCC--C----------
Q 005656          271 GYHGDIKVWDFKGRDLK------SRW-------EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA--L----------  325 (685)
Q Consensus       271 s~dg~i~iwd~~~~~~~------~~~-------~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~--~----------  325 (685)
                      +.|..+++||.+.-...      ..+       ..+..|++++|+.++.-|.++..|-.|+++.-.-  |          
T Consensus       301 G~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~  380 (559)
T KOG1334|consen  301 GSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPRE  380 (559)
T ss_pred             ChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchh
Confidence            99999999998743211      111       2236799999998888777888888999995332  2          


Q ss_pred             eeEEE-EecCCCC--eEEEE-EcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCe
Q 005656          326 RMVRK-FEGHTDR--ITDFC-FSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNG  400 (685)
Q Consensus       326 ~~~~~-~~~h~~~--I~~l~-~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~  400 (685)
                      ..+.. ++||.+.  |..+- |-|...|+++||.-|.|.||+-.+++++..+..... |+|+.=+|--..||+++.|. -
T Consensus       381 ~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~-D  459 (559)
T KOG1334|consen  381 QYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDH-D  459 (559)
T ss_pred             hccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCcc-c
Confidence            22333 7888764  66665 467889999999999999999999999999887666 99999999999999999997 8


Q ss_pred             EEEEEc
Q 005656          401 VYLWVN  406 (685)
Q Consensus       401 I~lW~~  406 (685)
                      |+||..
T Consensus       460 VKIWTP  465 (559)
T KOG1334|consen  460 VKIWTP  465 (559)
T ss_pred             eeeecC
Confidence            999973

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.77  E-value=9.2e-17  Score=148.74  Aligned_cols=335  Identities=15%  Similarity=0.188  Sum_probs=198.7

Q ss_pred             cEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCc-EEEEecCCCcEEEEEecCCCCCC
Q 005656            4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDP   82 (685)
Q Consensus         4 ~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~   82 (685)
                      .|..+.|..|..++|.....++.|.+|++...+-...+. .-..++.++.|||||+ +|.+..-|-.|.+|.+.+..   
T Consensus        50 ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId-eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~---  125 (447)
T KOG4497|consen   50 KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID-EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK---  125 (447)
T ss_pred             HhhheeeeccceeeeeeeeccceEEEEEeecceeEEEec-cCCCcceeeeECCCcceEeeeecceeEEEEEEeccce---
Confidence            466788999988677777889999999999999888888 6677899999999996 56666779999999998863   


Q ss_pred             ceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccc
Q 005656           83 RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI  162 (685)
Q Consensus        83 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (685)
                       .. .+.-....+..++|+|||++.+.+++-.....+++...             +...+   ....+.+.+.   .   
T Consensus       126 -~~-~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c-------------~~W~l---l~~f~~dT~D---l---  181 (447)
T KOG4497|consen  126 -GY-LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSC-------------KAWIL---LKEFKLDTID---L---  181 (447)
T ss_pred             -eE-EecccccCceeEEECCCCceeeeeecccHHHHHHHHhh-------------HHHHH---HHhcCCCccc---c---
Confidence             22 22233456789999999999888775311111111000             00000   0000000000   0   


Q ss_pred             cccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccc
Q 005656          163 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD  242 (685)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~  242 (685)
                            .-+--..++..+.+|+-.-...   +..  -...-.+..+.|+|+++++++|+.|+.+++.|--+-+...    
T Consensus       182 ------tgieWsPdg~~laVwd~~Leyk---v~a--Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~----  246 (447)
T KOG4497|consen  182 ------TGIEWSPDGNWLAVWDNVLEYK---VYA--YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFG----  246 (447)
T ss_pred             ------cCceECCCCcEEEEecchhhhe---eee--eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehh----
Confidence                  0011222333444444221000   000  0112345666666666666666666666555422111100    


Q ss_pred             ccccccCC--CCcCEE--------------------EEEEcCCCCEEEEEECCCeEEEEECCC--------CceEEEee-
Q 005656          243 MSERSNYA--HNGEVV--------------------GVACDSTNTLMISAGYHGDIKVWDFKG--------RDLKSRWE-  291 (685)
Q Consensus       243 ~~~~~~~~--h~~~v~--------------------~l~~~~~~~~l~s~s~dg~i~iwd~~~--------~~~~~~~~-  291 (685)
                             .  |-..+.                    ++.|.|.         |-...+|....        ...+..+. 
T Consensus       247 -------eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~---------~~~a~~~~~se~~YE~~~~pv~~~~lkp  310 (447)
T KOG4497|consen  247 -------EFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPT---------DLEAHIWEESETIYEQQMTPVKVHKLKP  310 (447)
T ss_pred             -------hhccchhccCchhhhhhhhhcchhhhcccccccCCC---------ccccCccccchhhhhhhhcceeeecccC
Confidence                   0  101110                    0111110         11111121110        00111111 


Q ss_pred             ------cCCceeEEEEeecCCEEEEEeCC--CeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005656          292 ------VGCSLVKIVYHRVNGLLATVADD--LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD  363 (685)
Q Consensus       292 ------~~~~i~~~~~~~~~~~l~~~~~d--g~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd  363 (685)
                            ....+..++|++|..++++-.+.  +.+.+||++..+....+. ...+|....|.|....|+.+.....+++|.
T Consensus       311 ~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~  389 (447)
T KOG4497|consen  311 PTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWA  389 (447)
T ss_pred             CCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEc
Confidence                  12567789999999999887654  589999999877655554 456899999999888888887778899998


Q ss_pred             cCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCC
Q 005656          364 VILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ  398 (685)
Q Consensus       364 ~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~  398 (685)
                      ......+..-.....|..+.|.-+|.+++..+.|.
T Consensus       390 psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDa  424 (447)
T KOG4497|consen  390 PSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDA  424 (447)
T ss_pred             CCCceEEecCCCCceeeeEEecCCCcEEEEEcCCc
Confidence            66544554444445699999999999999999885

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.77  E-value=4.9e-19  Score=170.96  Aligned_cols=230  Identities=18%  Similarity=0.261  Sum_probs=192.8

Q ss_pred             CCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEE
Q 005656           93 APPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVT  172 (685)
Q Consensus        93 ~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (685)
                      -.+..+.|+.+|++++.|+.-|.|-.+|..+.....++..                                        
T Consensus       130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v----------------------------------------  169 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV----------------------------------------  169 (545)
T ss_pred             cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh----------------------------------------
Confidence            3567889999999999999999999999999888777632                                        


Q ss_pred             EEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCC
Q 005656          173 CHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHN  252 (685)
Q Consensus       173 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~  252 (685)
                                                   ...|..+.|-.+.++++++- ...+++||-. |.....+         ...
T Consensus       170 -----------------------------~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~-GtElHCl---------k~~  209 (545)
T KOG1272|consen  170 -----------------------------METVRDVTFLHNEQFFAVAQ-KKYVYVYDNN-GTELHCL---------KRH  209 (545)
T ss_pred             -----------------------------hhhhhhhhhhcchHHHHhhh-hceEEEecCC-CcEEeeh---------hhc
Confidence                                         34466667777777766653 4568888854 4444433         334


Q ss_pred             cCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEE
Q 005656          253 GEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKF  331 (685)
Q Consensus       253 ~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~  331 (685)
                      ..|..+.|-|..-+|++++..|.++.-|+.+|+++..+... +.+..+.-+|-+..+-+|..+|+|.+|.....+++..+
T Consensus       210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKi  289 (545)
T KOG1272|consen  210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKI  289 (545)
T ss_pred             CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHH
Confidence            67889999999889999999999999999999999888765 77888999999999999999999999999999999888


Q ss_pred             ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656          332 EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       332 ~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~  405 (685)
                      -.|.++|.++++.++|+|+||++.|..++|||++....+.++..+.+...+++|..|. ||.+-.+  .|.||.
T Consensus       290 LcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkgl-LA~~~G~--~v~iw~  360 (545)
T KOG1272|consen  290 LCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGL-LALSYGD--HVQIWK  360 (545)
T ss_pred             HhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCccccccccccc-eeeecCC--eeeeeh
Confidence            8999999999999999999999999999999999988888888778899999998763 4444323  899995

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.77  E-value=4.1e-16  Score=147.17  Aligned_cols=174  Identities=19%  Similarity=0.261  Sum_probs=141.9

Q ss_pred             CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC----CceeEE
Q 005656          224 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG----CSLVKI  299 (685)
Q Consensus       224 g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~----~~i~~~  299 (685)
                      ..+++++.+.+..+..+         .....|.++.++.  ++|+++-. ..|+|||+++.+++.++...    ..+..+
T Consensus        68 r~Lkv~~~Kk~~~ICe~---------~fpt~IL~VrmNr--~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~Al  135 (391)
T KOG2110|consen   68 RKLKVVHFKKKTTICEI---------FFPTSILAVRMNR--KRLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCAL  135 (391)
T ss_pred             ceEEEEEcccCceEEEE---------ecCCceEEEEEcc--ceEEEEEc-ccEEEEecccceeehhhhccCCCccceEee
Confidence            45888888877776655         3456788888764  45666654 44999999999999887653    334455


Q ss_pred             EEeecCCEEEEEe--CCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCc-EEEEEcCCCceeeEEeec
Q 005656          300 VYHRVNGLLATVA--DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGS-LRIWDVILARQIDAIHVD  376 (685)
Q Consensus       300 ~~~~~~~~l~~~~--~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~-I~iwd~~~~~~i~~~~~~  376 (685)
                      .+++.+.++|.-+  ..|.|.+||..+-+.+..+..|.+.+.+++|+++|.+|||+|..|+ ||||.+++|+.+..|+..
T Consensus       136 S~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG  215 (391)
T KOG2110|consen  136 SPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRG  215 (391)
T ss_pred             ccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCC
Confidence            5555556888654  3689999999999999999999999999999999999999999998 899999999999999754


Q ss_pred             c---ceEEEEEcCCCCeEEEEEeCCCeEEEEEcCCCc
Q 005656          377 V---SITALSLSPNMDVLATAHVDQNGVYLWVNRCMF  410 (685)
Q Consensus       377 ~---~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~~~  410 (685)
                      .   .|.+++|+|++++|++++..+ +|++|.+....
T Consensus       216 ~~~~~IySL~Fs~ds~~L~~sS~Te-TVHiFKL~~~~  251 (391)
T KOG2110|consen  216 TYPVSIYSLSFSPDSQFLAASSNTE-TVHIFKLEKVS  251 (391)
T ss_pred             ceeeEEEEEEECCCCCeEEEecCCC-eEEEEEecccc
Confidence            3   389999999999999999887 99999876544

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.76  E-value=1.3e-16  Score=147.68  Aligned_cols=237  Identities=13%  Similarity=0.146  Sum_probs=175.0

Q ss_pred             CCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe---eeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCC
Q 005656            2 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR---LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT   78 (685)
Q Consensus         2 ~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~---~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~   78 (685)
                      -.+|+|.+|++|+. .+|++.....|.||......   ..+++. .|...|+++.|+|..+.|++++.|..-.+|.... 
T Consensus        10 ~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w~~~htls-~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~-   86 (361)
T KOG1523|consen   10 LEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLWEPAHTLS-EHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPS-   86 (361)
T ss_pred             cCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCceeceehh-hhCcceeEEeecCCCCceeEccCCCCccccccCC-
Confidence            36899999999998 89999988999999887654   567777 8999999999999999999999999999997632 


Q ss_pred             CCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeee
Q 005656           79 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD  158 (685)
Q Consensus        79 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (685)
                      ++..+....+..|...++++.|+|.++.+++|+..+.|.||-++....--.-                            
T Consensus        87 ~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVs----------------------------  138 (361)
T KOG1523|consen   87 GGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVS----------------------------  138 (361)
T ss_pred             CCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehh----------------------------
Confidence            3444555556678999999999999999999999999999977544321100                            


Q ss_pred             cccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccc
Q 005656          159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG  238 (685)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~  238 (685)
                                                       +++.+   ...+.|.+++|+|++-.+++|+.|+..++|..--...-.
T Consensus       139 ---------------------------------Khikk---PirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vde  182 (361)
T KOG1523|consen  139 ---------------------------------KHIKK---PIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDE  182 (361)
T ss_pred             ---------------------------------hhhCC---ccccceeeeeccCCcceecccccCcceeEEEEeeecccc
Confidence                                             01111   456789999999999999999999999998642111000


Q ss_pred             ccc--------c--ccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc-eEEEee-cCCceeEEEEeecC
Q 005656          239 SYL--------D--MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD-LKSRWE-VGCSLVKIVYHRVN  305 (685)
Q Consensus       239 ~~~--------~--~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~-~~~~i~~~~~~~~~  305 (685)
                      .-.        .  ..........+.|.++.|+|+|..|+-.+.|.++.+-|..... ...... ..-+..++.|-.+.
T Consensus       183 kpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~  261 (361)
T KOG1523|consen  183 KPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISEN  261 (361)
T ss_pred             CCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCC
Confidence            000        0  0000111456789999999999999999999999999987654 222221 22455555555443

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.76  E-value=1.9e-16  Score=167.30  Aligned_cols=233  Identities=10%  Similarity=0.036  Sum_probs=162.6

Q ss_pred             CCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCC---CceEEEEeecCceeeEechhhHHHHHhhcc
Q 005656           67 DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD---RAFRLFSVIQDQQSRELSQRHVAKRARKLK  143 (685)
Q Consensus        67 D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  143 (685)
                      +..|.+||.+...     ...+..|...+.+.+|+|||+.|+.++.+   ..|++||+.+++.....             
T Consensus       183 ~~~i~i~d~dg~~-----~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~-------------  244 (429)
T PRK01742        183 PYEVRVADYDGFN-----QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA-------------  244 (429)
T ss_pred             eEEEEEECCCCCC-----ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe-------------
Confidence            4688899876542     23445678889999999999999987754   36999998765422111             


Q ss_pred             ccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe-c
Q 005656          144 MKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-A  222 (685)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~  222 (685)
                                                                              ........++|+|+|+.++++. .
T Consensus       245 --------------------------------------------------------~~~g~~~~~~wSPDG~~La~~~~~  268 (429)
T PRK01742        245 --------------------------------------------------------SFRGHNGAPAFSPDGSRLAFASSK  268 (429)
T ss_pred             --------------------------------------------------------cCCCccCceeECCCCCEEEEEEec
Confidence                                                                    1112233679999999988865 5


Q ss_pred             CCcE--EEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE-CCCeEEEEECCCC-ceEEEeecCCceeE
Q 005656          223 GGWI--ERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGR-DLKSRWEVGCSLVK  298 (685)
Q Consensus       223 dg~i--~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~-~~~~~~~~~~~i~~  298 (685)
                      +|.+  ++||+.++......         .+...+....|+|+|+.|+.++ .+|...+|++... .....+....  ..
T Consensus       269 ~g~~~Iy~~d~~~~~~~~lt---------~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~  337 (429)
T PRK01742        269 DGVLNIYVMGANGGTPSQLT---------SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YS  337 (429)
T ss_pred             CCcEEEEEEECCCCCeEeec---------cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CC
Confidence            7765  45577666543221         5566788899999999877655 5788888876532 2222232222  45


Q ss_pred             EEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc--CCCceeeEEeec
Q 005656          299 IVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV--ILARQIDAIHVD  376 (685)
Q Consensus       299 ~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~--~~~~~i~~~~~~  376 (685)
                      ..|+|+|+.++.++.++ +.+||+.+++.......+  ....+.|+|||++|++++.+|.+.+|++  .+|..+..+..+
T Consensus       338 ~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~  414 (429)
T PRK01742        338 AQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGS  414 (429)
T ss_pred             ccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCC
Confidence            78999999998887765 556999988754332222  3456789999999999999999988886  367788888654


Q ss_pred             cc-eEEEEEcCC
Q 005656          377 VS-ITALSLSPN  387 (685)
Q Consensus       377 ~~-v~~v~~spd  387 (685)
                      .. +..++|||-
T Consensus       415 ~g~~~~p~wsp~  426 (429)
T PRK01742        415 DGQVKFPAWSPY  426 (429)
T ss_pred             CCCCCCcccCCC
Confidence            44 888999984

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=2.3e-17  Score=158.52  Aligned_cols=200  Identities=22%  Similarity=0.261  Sum_probs=154.6

Q ss_pred             EEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCcee
Q 005656            6 TALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL   85 (685)
Q Consensus         6 ~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~   85 (685)
                      .+++|+.+|. .|++|+.||.++||++.+...+.... .|.+.|.++.|+|||++|++.+.| ..+||+.+++.    .+
T Consensus       148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~~t~l~e~-~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~----~~  220 (398)
T KOG0771|consen  148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSMLTILEEI-AHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA----AL  220 (398)
T ss_pred             eEEEEcCCCC-EeeeccccceEEEEecCcchhhhhhH-hhcCccccceeCCCCcEEEEecCC-ceEEEEeccCc----hh
Confidence            5799999999 99999999999999998888777776 899999999999999999999999 99999998872    22


Q ss_pred             Eec--ccCCCCCeEEEEecCC---CEEE--EEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeee
Q 005656           86 RFR--SGHSAPPLCIRFYANG---RHIL--SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD  158 (685)
Q Consensus        86 ~~~--~~h~~~v~~i~~~~~~---~~l~--s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (685)
                      ...  ..-......+.|+.|+   .+.+  ....-+.|+.|++........+                            
T Consensus       221 a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l----------------------------  272 (398)
T KOG0771|consen  221 ARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFL----------------------------  272 (398)
T ss_pred             hhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccccc----------------------------
Confidence            221  2334456677888776   2222  3344567777776432211000                            


Q ss_pred             cccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccc
Q 005656          159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG  238 (685)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~  238 (685)
                                                     ....    .......|++++++++|+++++|+.+|.|.+|+..+-+...
T Consensus       273 -------------------------------~~~~----~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~  317 (398)
T KOG0771|consen  273 -------------------------------RLRK----KIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQ  317 (398)
T ss_pred             -------------------------------chhh----hhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeE
Confidence                                           0000    00234579999999999999999999999999998887776


Q ss_pred             ccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005656          239 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  282 (685)
Q Consensus       239 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~  282 (685)
                      ..+.       .|...|+++.|+|+.+++++.+.|.+..+..+.
T Consensus       318 ~vk~-------aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  318 YVKE-------AHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA  354 (398)
T ss_pred             eehh-------hheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence            6543       899999999999999999999988888877665

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=5.5e-16  Score=149.06  Aligned_cols=192  Identities=21%  Similarity=0.276  Sum_probs=153.5

Q ss_pred             EEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Q 005656          206 KACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD  285 (685)
Q Consensus       206 ~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~  285 (685)
                      .+++++++|..+++|+.||.+++|+..+........        .|...|.++.|+|||++|++.+.| ..+||+..++.
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~--------~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~  218 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEI--------AHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA  218 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhH--------hhcCccccceeCCCCcEEEEecCC-ceEEEEeccCc
Confidence            789999999999999999999999987776665544        899999999999999999999999 99999999996


Q ss_pred             eEEEeec---CCceeEEEEeecC---C--EEEEEeCCCeEEEEEcCCCee-----EEEEecCCCCeEEEEEcCCCCEEEE
Q 005656          286 LKSRWEV---GCSLVKIVYHRVN---G--LLATVADDLVIRLFDVVALRM-----VRKFEGHTDRITDFCFSEDGKWLLS  352 (685)
Q Consensus       286 ~~~~~~~---~~~i~~~~~~~~~---~--~l~~~~~dg~I~i~d~~~~~~-----~~~~~~h~~~I~~l~~spdg~~l~s  352 (685)
                      .+.....   +.....+.|+.++   .  +++.....+.|+.||+...+-     .++.......|++++.|+||++++.
T Consensus       219 ~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~Al  298 (398)
T KOG0771|consen  219 ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLAL  298 (398)
T ss_pred             hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEE
Confidence            6655542   3567788888877   3  333344456777777654322     1112223456999999999999999


Q ss_pred             EeCCCcEEEEEcCCCceeeEEe-eccc-eEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          353 SGMDGSLRIWDVILARQIDAIH-VDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       353 ~s~Dg~I~iwd~~~~~~i~~~~-~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                      |+.||.|-|++..+-++++.++ .|.. |+.+.|+||.+++++.+.+. .+.|....
T Consensus       299 GT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~-~~~v~~l~  354 (398)
T KOG0771|consen  299 GTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDN-EAAVTKLA  354 (398)
T ss_pred             eccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCC-ceeEEEEe
Confidence            9999999999999988888776 3433 99999999999999988775 77777543

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.75  E-value=2.3e-15  Score=142.21  Aligned_cols=311  Identities=15%  Similarity=0.208  Sum_probs=208.2

Q ss_pred             CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCC--CcEEEEEecCCCC
Q 005656            3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD--NSIKMWIFDTTDG   80 (685)
Q Consensus         3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D--~~v~iWd~~~~~~   80 (685)
                      ..|..+.|+.|.. +|..|+.|| -++|+.+......... .....|.-+-|+.  .++|..+.+  +.+++.++...  
T Consensus         6 ~ti~~~~~Nqd~~-~lsvGs~~G-yk~~~~~~~~k~~~~~-~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~--   78 (391)
T KOG2110|consen    6 PTINFIGFNQDST-LLSVGSKDG-YKIFSCSPFEKCFSKD-TEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKK--   78 (391)
T ss_pred             cceeeeeecccee-EEEccCCCc-eeEEecCchHHhhccc-CCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccC--
Confidence            3577888999988 999999999 6888877644322221 2233455566664  466655554  34888877655  


Q ss_pred             CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656           81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  160 (685)
Q Consensus        81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (685)
                        ..+... ....+|.++.++.+  .|+++=.+. |.|||+.+.+...++..                            
T Consensus        79 --~~ICe~-~fpt~IL~VrmNr~--RLvV~Lee~-IyIydI~~MklLhTI~t----------------------------  124 (391)
T KOG2110|consen   79 --TTICEI-FFPTSILAVRMNRK--RLVVCLEES-IYIYDIKDMKLLHTIET----------------------------  124 (391)
T ss_pred             --ceEEEE-ecCCceEEEEEccc--eEEEEEccc-EEEEecccceeehhhhc----------------------------
Confidence              222222 34567888888654  666665544 99999988776655531                            


Q ss_pred             cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEE--ecCCcEEEEECCCCcccc
Q 005656          161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG--TAGGWIERFNLQSGISRG  238 (685)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g--~~dg~i~~~d~~~~~~~~  238 (685)
                                                           .+.++..+.++++++.+.+++.-  ...|.|.+||..+-+...
T Consensus       125 -------------------------------------~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~  167 (391)
T KOG2110|consen  125 -------------------------------------TPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVN  167 (391)
T ss_pred             -------------------------------------cCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeee
Confidence                                                 11345567777777777888874  346999999999988877


Q ss_pred             ccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCe-EEEEECCCCceEEEeecC---CceeEEEEeecCCEEEEEeCC
Q 005656          239 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD-IKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVADD  314 (685)
Q Consensus       239 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~d  314 (685)
                      .+.        +|.+.+.+++|+++|.+|||++..|+ ||++.+.+|+.+..++.+   ..|.+++|+|++.+|++.+..
T Consensus       168 ~I~--------aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~T  239 (391)
T KOG2110|consen  168 TIN--------AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNT  239 (391)
T ss_pred             EEE--------ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCC
Confidence            765        99999999999999999999999887 799999999999988865   778999999999999999999


Q ss_pred             CeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCceeeEEeec--c--ceEEEEEcCC
Q 005656          315 LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM---DGSLRIWDVILARQIDAIHVD--V--SITALSLSPN  387 (685)
Q Consensus       315 g~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~---Dg~I~iwd~~~~~~i~~~~~~--~--~v~~v~~spd  387 (685)
                      ++|+||.++...    ......+-..-.|  -+.+.-....   .+.-.+||..  +.....+..  .  .+..+.-.+.
T Consensus       240 eTVHiFKL~~~~----~~~~~~p~~~~~~--~~~~sk~~~sylps~V~~~~~~~--R~FAt~~l~~s~~~~~~~l~~~~~  311 (391)
T KOG2110|consen  240 ETVHIFKLEKVS----NNPPESPTAGTSW--FGKVSKAATSYLPSQVSSVLDQS--RKFATAKLPESGRKNICSLSSIQK  311 (391)
T ss_pred             CeEEEEEecccc----cCCCCCCCCCCcc--cchhhhhhhhhcchhhhhhhhhc--cceeEEEccCCCccceEEeeccCC
Confidence            999999987643    1111111000001  0111111100   1122234433  233333322  2  2333333357


Q ss_pred             CCeEEEEEeCCCeEEEEEcCC
Q 005656          388 MDVLATAHVDQNGVYLWVNRC  408 (685)
Q Consensus       388 g~~Lat~~~d~~~I~lW~~~~  408 (685)
                      ...+.+++.|| .++.|....
T Consensus       312 ~~~v~vas~dG-~~y~y~l~~  331 (391)
T KOG2110|consen  312 IPRVLVASYDG-HLYSYRLPP  331 (391)
T ss_pred             CCEEEEEEcCC-eEEEEEcCC
Confidence            88999999998 899997654

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.74  E-value=1.5e-16  Score=168.09  Aligned_cols=235  Identities=9%  Similarity=0.097  Sum_probs=165.6

Q ss_pred             CCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCC---CcEEEEEecCCCCCCceeEecccCCCCCeEEEE
Q 005656           24 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD---NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRF  100 (685)
Q Consensus        24 dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D---~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~  100 (685)
                      +..|.+||..... ...+. .|...+.+.+|+|||+.|+.++.+   ..|.+||+.++.  .+.+....+|.   ..++|
T Consensus       183 ~~~i~i~d~dg~~-~~~lt-~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~--~~~l~~~~g~~---~~~~w  255 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVN-RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGA--RKVVASFRGHN---GAPAF  255 (429)
T ss_pred             eEEEEEECCCCCC-ceEec-cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCc--eEEEecCCCcc---CceeE
Confidence            4689999987665 34454 688899999999999999887653   469999886542  23444444443   46899


Q ss_pred             ecCCCEEEEEe-CCCceEEEEee--cCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCC
Q 005656          101 YANGRHILSAG-QDRAFRLFSVI--QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDT  177 (685)
Q Consensus       101 ~~~~~~l~s~s-~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (685)
                      +|||+.|+.++ .+|.+.+|.+.  ++.. ..+.                                              
T Consensus       256 SPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt----------------------------------------------  288 (429)
T PRK01742        256 SPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLT----------------------------------------------  288 (429)
T ss_pred             CCCCCEEEEEEecCCcEEEEEEECCCCCe-Eeec----------------------------------------------
Confidence            99999888765 68877776543  2221 1110                                              


Q ss_pred             ceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECCCCccccccccccccccCCCCcCEE
Q 005656          178 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVV  256 (685)
Q Consensus       178 ~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~  256 (685)
                                            .+...+...+|+|+|+.++..+ .+|...+|++..........        .+.+  .
T Consensus       289 ----------------------~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l--------~~~~--~  336 (429)
T PRK01742        289 ----------------------SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV--------GGRG--Y  336 (429)
T ss_pred             ----------------------cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe--------cCCC--C
Confidence                                  2334567889999999877665 56778888765322111111        2222  3


Q ss_pred             EEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcC--CCeeEEEEecC
Q 005656          257 GVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVV--ALRMVRKFEGH  334 (685)
Q Consensus       257 ~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~--~~~~~~~~~~h  334 (685)
                      ...|+|+|+.++.++.++ +.+||+.++........ .....+.|+|+|++|+.++.++.+.+|++.  +++.++.+.+|
T Consensus       337 ~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~  414 (429)
T PRK01742        337 SAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGS  414 (429)
T ss_pred             CccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCC
Confidence            578999999998887765 55699988875533222 234567899999999999999988888763  57888889989


Q ss_pred             CCCeEEEEEcCC
Q 005656          335 TDRITDFCFSED  346 (685)
Q Consensus       335 ~~~I~~l~~spd  346 (685)
                      .+.+...+|||-
T Consensus       415 ~g~~~~p~wsp~  426 (429)
T PRK01742        415 DGQVKFPAWSPY  426 (429)
T ss_pred             CCCCCCcccCCC
Confidence            999999999984

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.74  E-value=8.7e-16  Score=164.99  Aligned_cols=269  Identities=16%  Similarity=0.244  Sum_probs=190.3

Q ss_pred             EeCCCCeeeEEeecccccCeeEEEEeCCC-cEEEEecCCCcEEEEEecCCCCC---CceeEecccCCCCCeEEEEecCCC
Q 005656           30 WNLEKRRLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGD---PRLLRFRSGHSAPPLCIRFYANGR  105 (685)
Q Consensus        30 wd~~~~~~~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~D~~v~iWd~~~~~~~---~~~~~~~~~h~~~v~~i~~~~~~~  105 (685)
                      |+. .|.++..+. .|...|..++.++.. .+++|||.||+|++|+...-.+.   .+...+......++.++...+.+.
T Consensus      1034 W~p-~G~lVAhL~-Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~ 1111 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLH-EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD 1111 (1431)
T ss_pred             CCc-cceEeehhh-hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC
Confidence            553 466777776 799999999988866 89999999999999998654332   333344444678899999999999


Q ss_pred             EEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEc
Q 005656          106 HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRL  185 (685)
Q Consensus       106 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~  185 (685)
                      .++.++.||.|++.++......+....                                                     
T Consensus      1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~----------------------------------------------------- 1138 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVAT----------------------------------------------------- 1138 (1431)
T ss_pred             eEEEEcCCCeEEEEEccccccccceee-----------------------------------------------------
Confidence            999999999999999875321111100                                                     


Q ss_pred             CccccCceeecCCCCCCCCe-EEEEEcc-CC-CEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcC
Q 005656          186 QNFVLGEHILRPCPENPTAV-KACTISA-CG-NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS  262 (685)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~v-~~~~~s~-~g-~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  262 (685)
                             ....+.....+.+ ..-++.. .+ ..++.++..+.|..||+++........      .....|.|++++.+|
T Consensus      1139 -------~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk------~~~~hG~vTSi~idp 1205 (1431)
T KOG1240|consen 1139 -------QVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLK------NQLRHGLVTSIVIDP 1205 (1431)
T ss_pred             -------eeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhh------cCccccceeEEEecC
Confidence                   0000000112222 2223332 23 378889999999999998876655543      224568999999999


Q ss_pred             CCCEEEEEECCCeEEEEECCCCceEEEeecC--CceeEEEEeecC---CEEE-EEe-CCCeEEEEEcCCCeeEEEEecCC
Q 005656          263 TNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVN---GLLA-TVA-DDLVIRLFDVVALRMVRKFEGHT  335 (685)
Q Consensus       263 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~i~~~~~~~~~---~~l~-~~~-~dg~I~i~d~~~~~~~~~~~~h~  335 (685)
                      .+.++++|+..|.+.+||++-+.++..+.++  .++..+..+|-.   ...+ ++. ..+.|.+|++.+|..-..+...+
T Consensus      1206 ~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~ 1285 (1431)
T KOG1240|consen 1206 WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASD 1285 (1431)
T ss_pred             CceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCC
Confidence            9999999999999999999999998888775  778888777643   3444 444 57899999999997766665331


Q ss_pred             C-------------------CeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005656          336 D-------------------RITDFCFSEDGKWLLSSGMDGSLRIWDVIL  366 (685)
Q Consensus       336 ~-------------------~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~  366 (685)
                      +                   .....++..-+..+.+|+.|+.|+.||...
T Consensus      1286 ~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1286 GAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred             CCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence            1                   111223333456889999999999999754

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.74  E-value=8.2e-16  Score=140.11  Aligned_cols=277  Identities=14%  Similarity=0.161  Sum_probs=192.0

Q ss_pred             CCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCC-EEEEEeCC-------CceEEEEeecCceeeEechhhHHH
Q 005656           66 ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQD-------RAFRLFSVIQDQQSRELSQRHVAK  137 (685)
Q Consensus        66 ~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~s~d-------g~i~vwd~~~~~~~~~~~~~~~~~  137 (685)
                      .|+.|.+-+++...+. ..-..+..|.+.|+.++-+|-.. .|+++..+       -.+.+|.+...........     
T Consensus        38 ~dNqVhll~~d~e~s~-l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~t-----  111 (370)
T KOG1007|consen   38 EDNQVHLLRLDSEGSE-LLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSST-----  111 (370)
T ss_pred             CcceeEEEEecCccch-hhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccch-----
Confidence            3788999988876443 23345567889999999999654 45554332       1345666543321100000     


Q ss_pred             HHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEE
Q 005656          138 RARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFA  217 (685)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  217 (685)
                                                                           -+.+.......-+.+.|+.|.|++..+
T Consensus       112 -----------------------------------------------------lE~v~~Ldteavg~i~cvew~Pns~kl  138 (370)
T KOG1007|consen  112 -----------------------------------------------------LECVASLDTEAVGKINCVEWEPNSDKL  138 (370)
T ss_pred             -----------------------------------------------------hhHhhcCCHHHhCceeeEEEcCCCCee
Confidence                                                                 000000011334579999999999988


Q ss_pred             EEEecCCcEEEEECCCCccc-cccccccccccCCCCcCEEEEEEcC--CCCEEEEEECCCeEEEEECCCCceEEEee--c
Q 005656          218 VLGTAGGWIERFNLQSGISR-GSYLDMSERSNYAHNGEVVGVACDS--TNTLMISAGYHGDIKVWDFKGRDLKSRWE--V  292 (685)
Q Consensus       218 ~~g~~dg~i~~~d~~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~  292 (685)
                      ++-. +..|.+|+++.+..+ ..+..   .....|....++-+|+|  ++..+++.+ |+++..||+++.+....+.  +
T Consensus       139 asm~-dn~i~l~~l~ess~~vaev~s---s~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAH  213 (370)
T KOG1007|consen  139 ASMD-DNNIVLWSLDESSKIVAEVLS---SESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAH  213 (370)
T ss_pred             EEec-cCceEEEEcccCcchheeecc---cccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhh
Confidence            8876 788999999988774 22221   11224677788899998  567776654 8999999999887766654  3


Q ss_pred             CCceeEEEEeecCC-EEEEEeCCCeEEEEEcCC-CeeEEEEecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCc-
Q 005656          293 GCSLVKIVYHRVNG-LLATVADDLVIRLFDVVA-LRMVRKFEGHTDRITDFCFSED-GKWLLSSGMDGSLRIWDVILAR-  368 (685)
Q Consensus       293 ~~~i~~~~~~~~~~-~l~~~~~dg~I~i~d~~~-~~~~~~~~~h~~~I~~l~~spd-g~~l~s~s~Dg~I~iwd~~~~~-  368 (685)
                      ...+..+.|+|+.. +|++|++||.|+|||.+. ..++.++.+|...|.++.|+|- .+++++||.|..|.+|...+-. 
T Consensus       214 gq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSS  293 (370)
T KOG1007|consen  214 GQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSS  293 (370)
T ss_pred             cceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccc
Confidence            46799999999877 889999999999999985 4678999999999999999994 4678899999999999653211 


Q ss_pred             ----------------------------eeeEEe-eccceEEEEEcCCCCe-EEEEEeCCCeEEEEEcC
Q 005656          369 ----------------------------QIDAIH-VDVSITALSLSPNMDV-LATAHVDQNGVYLWVNR  407 (685)
Q Consensus       369 ----------------------------~i~~~~-~~~~v~~v~~spdg~~-Lat~~~d~~~I~lW~~~  407 (685)
                                                  .+.++. +...|.+++||.-..+ +|+-+.|| .+.|=..+
T Consensus       294 E~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDG-RviIs~V~  361 (370)
T KOG1007|consen  294 EQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDG-RVIISSVP  361 (370)
T ss_pred             ccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCc-eEEeecCC
Confidence                                        122333 3445999999987665 55667776 66665443

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.74  E-value=7e-16  Score=161.33  Aligned_cols=274  Identities=14%  Similarity=0.128  Sum_probs=194.2

Q ss_pred             CcEEEEEecCCCCCCceeEecccCCCCCeEEEEecC-CCEEEEEeCCCceEEEEeecCceee--EechhhHHHHHhhccc
Q 005656           68 NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSR--ELSQRHVAKRARKLKM  144 (685)
Q Consensus        68 ~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~  144 (685)
                      +.+.+|++... ..+....   .-..+|+++.|+|. ..+++.|..+|+|.+||++.+....  .+.             
T Consensus       222 ~~~~vW~~~~p-~~Pe~~~---~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls-------------  284 (555)
T KOG1587|consen  222 GVLLVWSLKNP-NTPELVL---ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLS-------------  284 (555)
T ss_pred             ceEEEEecCCC-CCceEEE---ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccc-------------
Confidence            47899999876 3333322   34678999999995 5677788889999999998765421  110             


Q ss_pred             cccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCC--EEEEEec
Q 005656          145 KEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN--FAVLGTA  222 (685)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~--~l~~g~~  222 (685)
                                                                         .....|..+++.+.|..+..  -+++++.
T Consensus       285 ---------------------------------------------------~~~~sh~~~v~~vvW~~~~~~~~f~s~ss  313 (555)
T KOG1587|consen  285 ---------------------------------------------------ALEVSHSEPVTAVVWLQNEHNTEFFSLSS  313 (555)
T ss_pred             ---------------------------------------------------cccccCCcCeEEEEEeccCCCCceEEEec
Confidence                                                               00116677888888876544  4899999


Q ss_pred             CCcEEEEECCCCccccccccccc----cccCCCCcCEEEEEEcCCC-CEEEEEECCCeEEEEECCCC---c-----eE-E
Q 005656          223 GGWIERFNLQSGISRGSYLDMSE----RSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGR---D-----LK-S  288 (685)
Q Consensus       223 dg~i~~~d~~~~~~~~~~~~~~~----~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~---~-----~~-~  288 (685)
                      ||.|..|+++.-...........    .....-...++++.|.+.. ..++.|+.+|.|.--+-...   .     .. .
T Consensus       314 DG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~  393 (555)
T KOG1587|consen  314 DGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHST  393 (555)
T ss_pred             CCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccccc
Confidence            99999998775443211110000    0011233568899998754 57889999999887443322   2     11 2


Q ss_pred             EeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcC-CCeeEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCC
Q 005656          289 RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVV-ALRMVRKFEGHTDRITDFCFSEDGK-WLLSSGMDGSLRIWDVIL  366 (685)
Q Consensus       289 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~-~~~~~~~~~~h~~~I~~l~~spdg~-~l~s~s~Dg~I~iwd~~~  366 (685)
                      ...+.+++.++.++|-+..++..+.|.+++||... ...++..+..+...|++++|||-.. .++++..||.|.+||+..
T Consensus       394 ~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~  473 (555)
T KOG1587|consen  394 FITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQ  473 (555)
T ss_pred             ccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhc
Confidence            22345899999999988865555559999999988 7778888888888899999999654 677888899999999964


Q ss_pred             C--ceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEEcCCCc
Q 005656          367 A--RQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNRCMF  410 (685)
Q Consensus       367 ~--~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~~~~~~  410 (685)
                      .  .++.......+ .+.+.|++.|+.|++|...| .+++|++...+
T Consensus       474 ~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G-~~~~~~l~~~l  519 (555)
T KOG1587|consen  474 DDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANG-TTHILKLSESL  519 (555)
T ss_pred             cccCCcccccccccccceeecCCCCcEEEEecCCC-cEEEEEcCchh
Confidence            3  44444444444 77888999999999999887 89999876544

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.73  E-value=4.8e-16  Score=147.53  Aligned_cols=209  Identities=12%  Similarity=0.151  Sum_probs=172.7

Q ss_pred             cCCCCCCCCeEEEEEcc-CCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCC-CEEEEEECC
Q 005656          196 RPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYH  273 (685)
Q Consensus       196 ~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~d  273 (685)
                      ....+|..++..++|.| +.+.+++|+.|.+|.+|.+..+.....+. .+.....+|...|--++|+|.- +.|++++.|
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt-epvv~L~gH~rrVg~V~wHPtA~NVLlsag~D  153 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT-EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD  153 (472)
T ss_pred             CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc-cceEEEeecceeEEEEeecccchhhHhhccCC
Confidence            34458999999999999 56778899999999999998776655443 2233455999999999999974 678999999


Q ss_pred             CeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCC-eEEEEEcCCCCEEEE
Q 005656          274 GDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDR-ITDFCFSEDGKWLLS  352 (685)
Q Consensus       274 g~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~-I~~l~~spdg~~l~s  352 (685)
                      .+|.+||+.+++.+.++.|+..|.++.|+.+|.++++.+.|..|+|||.++++.+..-.+|.+. -..+.|-.+|..+.|
T Consensus       154 n~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tT  233 (472)
T KOG0303|consen  154 NTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTT  233 (472)
T ss_pred             ceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeee
Confidence            9999999999999999999999999999999999999999999999999999999998888764 445668788885555


Q ss_pred             Ee---CCCcEEEEEcCCC---ceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656          353 SG---MDGSLRIWDVILA---RQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       353 ~s---~Dg~I~iwd~~~~---~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~  405 (685)
                      |-   .+..+-+||-..-   -....+...+.|.---|.||.++++.++..++.|+.|.
T Consensus       234 Gfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyE  292 (472)
T KOG0303|consen  234 GFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFE  292 (472)
T ss_pred             ccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEE
Confidence            42   5778999986543   23345556666888889999999999988777999885

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.72  E-value=1.1e-15  Score=164.32  Aligned_cols=289  Identities=21%  Similarity=0.279  Sum_probs=198.7

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCC-------eeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEE
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR-------RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMW   73 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~-------~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iW   73 (685)
                      |++.|..++.++....+++||+.||+|++||+..-       +...++. .-...+.++.+.+++..+|.++.||.|++.
T Consensus      1047 hs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys-~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~ 1125 (1431)
T KOG1240|consen 1047 HSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYS-PEGSRVEKVTMCGNGDQFAVSTKDGSVRVL 1125 (1431)
T ss_pred             ccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEe-ccCCceEEEEeccCCCeEEEEcCCCeEEEE
Confidence            67788888888766349999999999999998641       1222222 246789999999999999999999999999


Q ss_pred             EecCCCCCC---ceeEecccCC-CCCeE-EEEecC-C-CEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccc
Q 005656           74 IFDTTDGDP---RLLRFRSGHS-APPLC-IRFYAN-G-RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKE  146 (685)
Q Consensus        74 d~~~~~~~~---~~~~~~~~h~-~~v~~-i~~~~~-~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (685)
                      +++......   ...+....+. +.+.+ -+|... + ..++.+..-+.|..||++.......+.               
T Consensus      1126 ~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk--------------- 1190 (1431)
T KOG1240|consen 1126 RIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLK--------------- 1190 (1431)
T ss_pred             EccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhh---------------
Confidence            998732211   1112222222 22332 233322 3 367778888899999987654322221               


Q ss_pred             cccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcE
Q 005656          147 EELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWI  226 (685)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i  226 (685)
                                                              .           ....+.|++++++|.++++++|+..|.+
T Consensus      1191 ----------------------------------------~-----------~~~hG~vTSi~idp~~~WlviGts~G~l 1219 (1431)
T KOG1240|consen 1191 ----------------------------------------N-----------QLRHGLVTSIVIDPWCNWLVIGTSRGQL 1219 (1431)
T ss_pred             ----------------------------------------c-----------CccccceeEEEecCCceEEEEecCCceE
Confidence                                                    0           1346789999999999999999999999


Q ss_pred             EEEECCCCccccccccccccccCCCCcCEEEEEEcCCC---CEEEEEE--CCCeEEEEECCCCceEEEeecCC-------
Q 005656          227 ERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN---TLMISAG--YHGDIKVWDFKGRDLKSRWEVGC-------  294 (685)
Q Consensus       227 ~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~-------  294 (685)
                      .+||++-+..+.....       ++..+++.+..+|..   ...++++  ..+.|.+|++.+|.....+....       
T Consensus      1220 ~lWDLRF~~~i~sw~~-------P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~ 1292 (1431)
T KOG1240|consen 1220 VLWDLRFRVPILSWEH-------PARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSY 1292 (1431)
T ss_pred             EEEEeecCceeecccC-------cccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhh
Confidence            9999998887766532       556778888777643   3555544  46789999999986655543220       


Q ss_pred             -------------ceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeE-----------------------------E---
Q 005656          295 -------------SLVKIVYHRVNGLLATVADDLVIRLFDVVALRMV-----------------------------R---  329 (685)
Q Consensus       295 -------------~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~-----------------------------~---  329 (685)
                                   ....+.+...+..+.+|+.|..|+.||....+..                             .   
T Consensus      1293 ~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i 1372 (1431)
T KOG1240|consen 1293 ALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFI 1372 (1431)
T ss_pred             hcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhccccccCCCccchhhh
Confidence                         1112233334568999999999999997542111                             0   


Q ss_pred             ----------------EE--------ecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEE
Q 005656          330 ----------------KF--------EGHTDRITDFCFSED-GKWLLSSGMDGSLRIWD  363 (685)
Q Consensus       330 ----------------~~--------~~h~~~I~~l~~spd-g~~l~s~s~Dg~I~iwd  363 (685)
                                      ..        ..|..+|+++++... ..+|++++.||.|+||.
T Consensus      1373 ~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1373 IYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             hhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence                            00        136668888887653 45899999999999993

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.72  E-value=1.7e-15  Score=160.32  Aligned_cols=290  Identities=16%  Similarity=0.210  Sum_probs=206.1

Q ss_pred             ccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccC---CCCCeEEEEec--CCCEEEEEeCCCceEEEE
Q 005656           46 DNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGH---SAPPLCIRFYA--NGRHILSAGQDRAFRLFS  120 (685)
Q Consensus        46 ~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h---~~~v~~i~~~~--~~~~l~s~s~dg~i~vwd  120 (685)
                      ..+-..+.|+|=.+.++++...-.|++||+..+    +.+..+..+   ...|+.+.+-.  |...+++|+.||.||||+
T Consensus      1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~----~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk 1139 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKG----RLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWK 1139 (1387)
T ss_pred             CCCCceeeecCCCceeEEcCCcceEEEEecccC----ceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEec
Confidence            345677889998999999987789999999877    455444332   35688888865  356899999999999997


Q ss_pred             eecCc-eeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCC
Q 005656          121 VIQDQ-QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCP  199 (685)
Q Consensus       121 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  199 (685)
                      -.... ...                                                 ..|..|..-....      +  
T Consensus      1140 ~y~~~~~~~-------------------------------------------------eLVTaw~~Ls~~~------~-- 1162 (1387)
T KOG1517|consen 1140 DYADKWKKP-------------------------------------------------ELVTAWSSLSDQL------P-- 1162 (1387)
T ss_pred             ccccccCCc-------------------------------------------------eeEEeeccccccC------c--
Confidence            53321 000                                                 1112222111000      0  


Q ss_pred             CCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCC-CCEEEEEECCCeEEE
Q 005656          200 ENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMISAGYHGDIKV  278 (685)
Q Consensus       200 ~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~s~dg~i~i  278 (685)
                      ...+.-.-+.|..+..+|++++.-..|++||.........++.       +....|+++.-+-. |..++.|..||.|++
T Consensus      1163 ~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~-------~s~t~vTaLS~~~~~gn~i~AGfaDGsvRv 1235 (1387)
T KOG1517|consen 1163 GARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPY-------GSSTLVTALSADLVHGNIIAAGFADGSVRV 1235 (1387)
T ss_pred             cCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeeccc-------CCCccceeecccccCCceEEEeecCCceEE
Confidence            1111225567888778888888889999999998887776643       55667777776543 588999999999999


Q ss_pred             EECCCCc---eEEEeecC---CceeEEEEeecCC-EEEEEeCCCeEEEEEcCCCee--EEEEecCC--C-CeEEEEEcCC
Q 005656          279 WDFKGRD---LKSRWEVG---CSLVKIVYHRVNG-LLATVADDLVIRLFDVVALRM--VRKFEGHT--D-RITDFCFSED  346 (685)
Q Consensus       279 wd~~~~~---~~~~~~~~---~~i~~~~~~~~~~-~l~~~~~dg~I~i~d~~~~~~--~~~~~~h~--~-~I~~l~~spd  346 (685)
                      ||.+...   .+..+..+   .+|..+.+.+.|- .|++|+.||.|++||++....  .-....|.  + ..+++..+++
T Consensus      1236 yD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~h 1315 (1387)
T KOG1517|consen 1236 YDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEH 1315 (1387)
T ss_pred             eecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccC
Confidence            9988543   33444333   3489999998776 599999999999999987422  22222333  3 5999999999


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCceeeEEee--------ccceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656          347 GKWLLSSGMDGSLRIWDVILARQIDAIHV--------DVSITALSLSPNMDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       347 g~~l~s~s~Dg~I~iwd~~~~~~i~~~~~--------~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~  406 (685)
                      ...+|+|+. +.|+||++. |+.+..++.        ...+.|++|+|-.-.||+|..|. .|.||..
T Consensus      1316 apiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds-~V~iYs~ 1380 (1387)
T KOG1517|consen 1316 APIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADS-TVSIYSC 1380 (1387)
T ss_pred             CCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCc-eEEEeec
Confidence            999999998 999999975 555444432        12389999999999999997775 9999963

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=2.4e-15  Score=149.30  Aligned_cols=288  Identities=15%  Similarity=0.209  Sum_probs=212.3

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG   80 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~   80 (685)
                      |.+.-+.|..+|||++++|||.+.-.|++||+.+-.+...-. -....|.-.-.+.|-..++--..|.+|-+..-   .+
T Consensus        50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERh-lDae~V~feiLsDD~SK~v~L~~DR~IefHak---~G  125 (703)
T KOG2321|consen   50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERH-LDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK---YG  125 (703)
T ss_pred             CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeec-ccccceeEEEeccchhhheEeecCceeeehhh---cC
Confidence            345678899999999999999999999999998876554432 22344555555556556666667888766521   11


Q ss_pred             CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656           81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  160 (685)
Q Consensus        81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (685)
                        ......  -...-..++++.-..-|+.++....|.-++++.|.....+.                             
T Consensus       126 --~hy~~R--IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~-----------------------------  172 (703)
T KOG2321|consen  126 --RHYRTR--IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFE-----------------------------  172 (703)
T ss_pred             --eeeeee--cCcCCccccccCCCccEEEeecCcceEEEEccccccccccc-----------------------------
Confidence              111111  12233556666555556666666778888887776544432                             


Q ss_pred             cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656          161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  240 (685)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~  240 (685)
                                                             ...+.+.+|.+++....+++|+.+|.|..||.++......+
T Consensus       173 ---------------------------------------~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l  213 (703)
T KOG2321|consen  173 ---------------------------------------TDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTL  213 (703)
T ss_pred             ---------------------------------------cccccceeeeecCccceEEecccCceEEEecchhhhhheee
Confidence                                                   44578899999999999999999999999999988777666


Q ss_pred             ccccccccCCCCc-----CEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC--CceeEEEEeecCC-EEEEEe
Q 005656          241 LDMSERSNYAHNG-----EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNG-LLATVA  312 (685)
Q Consensus       241 ~~~~~~~~~~h~~-----~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~i~~~~~~~~~~-~l~~~~  312 (685)
                      .....  ...|.+     .|+++.|+.+|-.+++|..+|.+.|||+++.+++..-.+.  .+|..+.|.+.+. --++..
T Consensus       214 ~~~~~--v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~  291 (703)
T KOG2321|consen  214 DAASS--VNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM  291 (703)
T ss_pred             ecccc--cCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec
Confidence            43221  113333     4999999999999999999999999999999888777665  7889999977643 233344


Q ss_pred             CCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005656          313 DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA  367 (685)
Q Consensus       313 ~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~  367 (685)
                      +...++|||-.+|+....+. ....++++|+-|++.++++|-.++.+..|=++.-
T Consensus       292 Dk~~~kiWd~~~Gk~~asiE-pt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~L  345 (703)
T KOG2321|consen  292 DKRILKIWDECTGKPMASIE-PTSDLNDFCFVPGSGMFFTANESSKMHTYYIPSL  345 (703)
T ss_pred             chHHhhhcccccCCceeecc-ccCCcCceeeecCCceEEEecCCCcceeEEcccc
Confidence            55789999999999988887 4455999999999999999999988888877653

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.71  E-value=3.9e-15  Score=151.91  Aligned_cols=291  Identities=13%  Similarity=0.135  Sum_probs=186.7

Q ss_pred             EEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEec-CCCcEEEEEecCCCCCCcee
Q 005656            7 ALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLL   85 (685)
Q Consensus         7 ~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s-~D~~v~iWd~~~~~~~~~~~   85 (685)
                      .+.|+|||+ ++++++.||.|.++|+.+++.+.+++.  .....++++++||++++++. .++.+.++|..+.    +.+
T Consensus        41 ~~~~s~Dgr-~~yv~~rdg~vsviD~~~~~~v~~i~~--G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl----e~v  113 (369)
T PF02239_consen   41 GLKFSPDGR-YLYVANRDGTVSVIDLATGKVVATIKV--GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETL----EPV  113 (369)
T ss_dssp             EEE-TT-SS-EEEEEETTSEEEEEETTSSSEEEEEE---SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT------EE
T ss_pred             EEEecCCCC-EEEEEcCCCeEEEEECCcccEEEEEec--CCCcceEEEcCCCCEEEEEecCCCceeEeccccc----cce
Confidence            467999999 777778899999999999999999983  34568999999999888775 5899999988775    445


Q ss_pred             Eeccc-------CCCCCeEEEEecCCCEEEEEeCC-CceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeee
Q 005656           86 RFRSG-------HSAPPLCIRFYANGRHILSAGQD-RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF  157 (685)
Q Consensus        86 ~~~~~-------h~~~v~~i~~~~~~~~l~s~s~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (685)
                      +....       ....+..|..+|....++..-.| +.|.+.|....+....-.                          
T Consensus       114 ~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~--------------------------  167 (369)
T PF02239_consen  114 KTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTT--------------------------  167 (369)
T ss_dssp             EEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEE--------------------------
T ss_pred             eecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceee--------------------------
Confidence            44332       23456778788887756555544 666666654432211100                          


Q ss_pred             ecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEE-ecCCcEEEEECCCCcc
Q 005656          158 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAGGWIERFNLQSGIS  236 (685)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~dg~i~~~d~~~~~~  236 (685)
                                                           .    ..........|+|++++++++ .....|.++|..++..
T Consensus       168 -------------------------------------i----~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~  206 (369)
T PF02239_consen  168 -------------------------------------I----KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL  206 (369)
T ss_dssp             -------------------------------------E----E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE
T ss_pred             -------------------------------------e----cccccccccccCcccceeeecccccceeEEEeeccceE
Confidence                                                 0    113345678999999988765 5567899999998877


Q ss_pred             ccccccccccccCCCCcCEEEEE-------E--cCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCE
Q 005656          237 RGSYLDMSERSNYAHNGEVVGVA-------C--DSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGL  307 (685)
Q Consensus       237 ~~~~~~~~~~~~~~h~~~v~~l~-------~--~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~  307 (685)
                      ...+..    ....|..++..+-       |  ...+...++.-....+.+||..+.+.+.++...+.-.-+..||++++
T Consensus       207 v~~i~~----g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~  282 (369)
T PF02239_consen  207 VALIDT----GKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRY  282 (369)
T ss_dssp             EEEEE-----SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SE
T ss_pred             EEEeec----cccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCcc
Confidence            654432    1113444443331       2  11223332333334566789999999999988765588899999999


Q ss_pred             EEEE----eCCCeEEEEEcCCCeeEEEEecC-CCCeEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCceeeEEee
Q 005656          308 LATV----ADDLVIRLFDVVALRMVRKFEGH-TDRITDFCFSEDGKWLLSSGM--DGSLRIWDVILARQIDAIHV  375 (685)
Q Consensus       308 l~~~----~~dg~I~i~d~~~~~~~~~~~~h-~~~I~~l~~spdg~~l~s~s~--Dg~I~iwd~~~~~~i~~~~~  375 (685)
                      +++.    ...+.|.++|.++.+.+.++... ...+..+.|++||+++..+..  ++.|.|||..+.+.+..+..
T Consensus       283 vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~~  357 (369)
T PF02239_consen  283 VWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIPV  357 (369)
T ss_dssp             EEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE-
T ss_pred             EEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEEe
Confidence            9998    44589999999999888887532 235899999999997765543  34799999999999998873

...

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=4.5e-15  Score=147.47  Aligned_cols=275  Identities=13%  Similarity=0.179  Sum_probs=202.3

Q ss_pred             ccccCeeEEEEeCCCcEE-EEecCCCcEEEEEecCCCCCCceeEeccc-CCCCCeEEEEecCCCEEEEEeCCCceEEEEe
Q 005656           44 AHDNAIISLHFFANEPVL-MSASADNSIKMWIFDTTDGDPRLLRFRSG-HSAPPLCIRFYANGRHILSAGQDRAFRLFSV  121 (685)
Q Consensus        44 ~h~~~V~~l~~sp~~~~l-~s~s~D~~v~iWd~~~~~~~~~~~~~~~~-h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~  121 (685)
                      .|...-+.|..+|||+|+ +||..--.|++||+..-.     ++.-.. ....|.-.-.+.|-..++.-..|++|-+..-
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS-----LKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak  123 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS-----LKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK  123 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccce-----eeeeecccccceeEEEeccchhhheEeecCceeeehhh
Confidence            577888999999999965 556667899999987642     222222 2334444444545444555555666654321


Q ss_pred             ecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCC
Q 005656          122 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN  201 (685)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  201 (685)
                      .......                                                                       .-
T Consensus       124 ~G~hy~~-----------------------------------------------------------------------RI  132 (703)
T KOG2321|consen  124 YGRHYRT-----------------------------------------------------------------------RI  132 (703)
T ss_pred             cCeeeee-----------------------------------------------------------------------ec
Confidence            1000000                                                                       11


Q ss_pred             CCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005656          202 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF  281 (685)
Q Consensus       202 ~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~  281 (685)
                      +..-..++++.-..-+++++....|+.+|+..|.....+.        ...+.++++..++...+|++|+.+|.|.+||.
T Consensus       133 P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~--------~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDp  204 (703)
T KOG2321|consen  133 PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFE--------TDSGELNVVSINEEHGLLACGTEDGVVEFWDP  204 (703)
T ss_pred             CcCCccccccCCCccEEEeecCcceEEEEccccccccccc--------cccccceeeeecCccceEEecccCceEEEecc
Confidence            2333456666655667777888889999999999888774        45588999999999999999999999999999


Q ss_pred             CCCceEEEeecCC------------ceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEe-cCCCCeEEEEEcCC--
Q 005656          282 KGRDLKSRWEVGC------------SLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE-GHTDRITDFCFSED--  346 (685)
Q Consensus       282 ~~~~~~~~~~~~~------------~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~-~h~~~I~~l~~spd--  346 (685)
                      +....+.++....            .|+++.|+.+|-.+++|+.+|.|.|||+++.+++..-. +..-+|..+.|.+.  
T Consensus       205 R~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~  284 (703)
T KOG2321|consen  205 RDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQ  284 (703)
T ss_pred             hhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCC
Confidence            9887766665432            38999999999999999999999999999988876443 23457899999775  


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEE
Q 005656          347 GKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLW  404 (685)
Q Consensus       347 g~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW  404 (685)
                      +..|+|.. ...++|||-.+|+....+.....+..+|+-|++-++++|..+. .+..|
T Consensus       285 q~~v~S~D-k~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~-~m~~y  340 (703)
T KOG2321|consen  285 QNKVVSMD-KRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESS-KMHTY  340 (703)
T ss_pred             CceEEecc-hHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCC-cceeE
Confidence            44566553 4679999999999999999888899999999999999998665 45444

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=1.3e-14  Score=136.56  Aligned_cols=302  Identities=11%  Similarity=0.162  Sum_probs=193.1

Q ss_pred             cEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCc-EEEEecCCCcEEEEEecCCCCCC
Q 005656            4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDP   82 (685)
Q Consensus         4 ~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~   82 (685)
                      .+..++|++.-- -+|++..|-.|++||-.. ++...++......|+|++|-|.+. -|+.|+ .+-|.+|..+......
T Consensus       100 dlr~~aWhqH~~-~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgC-r~gIciW~~s~tln~~  176 (445)
T KOG2139|consen  100 DLRGVAWHQHII-AFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGC-RAGICIWSDSRTLNAN  176 (445)
T ss_pred             ceeeEeechhhh-hhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeee-cceeEEEEcCcccccc
Confidence            466789998544 678889999999999777 666666656677899999999765 555554 4679999876543222


Q ss_pred             ce----------eEecccCCCCCeEEEEecCCCEEEEEeC-CCceEEEEeecCceeeEechhhHHHHHhhcccccccccc
Q 005656           83 RL----------LRFRSGHSAPPLCIRFYANGRHILSAGQ-DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL  151 (685)
Q Consensus        83 ~~----------~~~~~~h~~~v~~i~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (685)
                      +.          +..-.|| .+|++++|.+||..+++++. |..|++||..++.......                    
T Consensus       177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~--------------------  235 (445)
T KOG2139|consen  177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP--------------------  235 (445)
T ss_pred             cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc--------------------
Confidence            22          2223455 78999999999999999875 6789999998876433221                    


Q ss_pred             CceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEEC
Q 005656          152 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL  231 (685)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~  231 (685)
                                                                      ...+.++-+.|||||.++++++-|+..++|+.
T Consensus       236 ------------------------------------------------~glgg~slLkwSPdgd~lfaAt~davfrlw~e  267 (445)
T KOG2139|consen  236 ------------------------------------------------KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQE  267 (445)
T ss_pred             ------------------------------------------------cCCCceeeEEEcCCCCEEEEecccceeeeehh
Confidence                                                            34567889999999999999999999999965


Q ss_pred             CCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEE-E
Q 005656          232 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLA-T  310 (685)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~  310 (685)
                      ..........        -..+.|...+|+|+|++|..+.. |.-++|.+.                  |......+. .
T Consensus       268 ~q~wt~erw~--------lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~------------------f~~~~~~~~~~  320 (445)
T KOG2139|consen  268 NQSWTKERWI--------LGSGRVQTACWSPCGSFLLFACS-GSPRLYSLT------------------FDGEDSVFLRP  320 (445)
T ss_pred             cccceeccee--------ccCCceeeeeecCCCCEEEEEEc-CCceEEEEe------------------ecCCCccccCc
Confidence            4332221111        33459999999999987665542 333334332                  211111110 1


Q ss_pred             EeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCC--------cEEEEEcCCCceeeEEe----eccc
Q 005656          311 VADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG--------SLRIWDVILARQIDAIH----VDVS  378 (685)
Q Consensus       311 ~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg--------~I~iwd~~~~~~i~~~~----~~~~  378 (685)
                      ++.....-+-|+..-....--+--.+.+.+++|.|.|.+||+.-..+        .|.+||....-.+....    ....
T Consensus       321 ~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~  400 (445)
T KOG2139|consen  321 QSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEY  400 (445)
T ss_pred             ccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCC
Confidence            22222223333321110000011346788999999999999875433        47778876554443331    1222


Q ss_pred             eEEEEEcC---CCCeEEEEEeCCCeEEEEE
Q 005656          379 ITALSLSP---NMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       379 v~~v~~sp---dg~~Lat~~~d~~~I~lW~  405 (685)
                      ..-++|+|   +|.+|.++=..| .+.-|.
T Consensus       401 P~~IsF~pl~n~g~lLsiaWsTG-riq~yp  429 (445)
T KOG2139|consen  401 PAYISFGPLKNEGRLLSIAWSTG-RIQRYP  429 (445)
T ss_pred             CceEEeeecccCCcEEEEEeccC-ceEeee
Confidence            55566666   566777776665 666554

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.69  E-value=5.7e-14  Score=130.30  Aligned_cols=239  Identities=15%  Similarity=0.246  Sum_probs=165.6

Q ss_pred             cEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEE-ecCC------CcEEEEEec
Q 005656            4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS-ASAD------NSIKMWIFD   76 (685)
Q Consensus         4 ~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s-~s~D------~~v~iWd~~   76 (685)
                      ...+++|+.|.. .+++|..+| .+||+.+.-+.....+ .+.+++.-+...-..++|+- ||.+      +.|.||| +
T Consensus         7 ~~lsvs~NQD~S-cFava~~~G-friyn~~P~ke~~~r~-~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWD-D   82 (346)
T KOG2111|consen    7 KTLSVSFNQDHS-CFAVATDTG-FRIYNCDPFKESASRQ-FIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWD-D   82 (346)
T ss_pred             ceeEEEEccCCc-eEEEEecCc-eEEEecCchhhhhhhc-cccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEe-c
Confidence            456799999988 899988777 8999988744433332 23333322222223444443 3333      5799998 3


Q ss_pred             CCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecC-ceeeEechhhHHHHHhhccccccccccCcee
Q 005656           77 TTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQD-QQSRELSQRHVAKRARKLKMKEEELKLKPVI  155 (685)
Q Consensus        77 ~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (685)
                      ..   .+++..+ ....+|.++.+.++  .|++.- .+.|.||...++ +....+..                       
T Consensus        83 ~k---~~~i~el-~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et-----------------------  132 (346)
T KOG2111|consen   83 LK---ERCIIEL-SFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIET-----------------------  132 (346)
T ss_pred             cc---CcEEEEE-EeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeec-----------------------
Confidence            22   2555554 45788999999876  555544 667999987633 22222210                       


Q ss_pred             eeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEE-EecCCcEEEEECCCC
Q 005656          156 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL-GTAGGWIERFNLQSG  234 (685)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-g~~dg~i~~~d~~~~  234 (685)
                                                                . ..+..+.+++-+.+...|+. |..-|.|.+-|+...
T Consensus       133 ------------------------------------------~-~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~  169 (346)
T KOG2111|consen  133 ------------------------------------------R-SNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLAST  169 (346)
T ss_pred             ------------------------------------------c-cCCCceEeecCCCCceEEEcCCCccceEEEEEhhhc
Confidence                                                      0 22333444444444444544 556699999999876


Q ss_pred             ccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCe-EEEEECCCCceEEEeecC---CceeEEEEeecCCEEEE
Q 005656          235 ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD-IKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLAT  310 (685)
Q Consensus       235 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~  310 (685)
                      ......      ...+|.+.|.|++.+-+|..+||+|..|+ |+|||..+|.++..+..+   ..|.+++|+|++.+||+
T Consensus       170 ~~~~p~------~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~Lav  243 (346)
T KOG2111|consen  170 KPNAPS------IINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAV  243 (346)
T ss_pred             CcCCce------EEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEE
Confidence            663111      12299999999999999999999999997 799999999999988764   78999999999999999


Q ss_pred             EeCCCeEEEEEcCCC
Q 005656          311 VADDLVIRLFDVVAL  325 (685)
Q Consensus       311 ~~~dg~I~i~d~~~~  325 (685)
                      +++.|+++||.++..
T Consensus       244 sSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  244 SSDKGTLHIFSLRDT  258 (346)
T ss_pred             EcCCCeEEEEEeecC
Confidence            999999999988753

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.69  E-value=2.4e-14  Score=151.65  Aligned_cols=233  Identities=14%  Similarity=0.042  Sum_probs=156.1

Q ss_pred             CcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCC---CceEEEEeecCceeeEechhhHHHHHhhccc
Q 005656           68 NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD---RAFRLFSVIQDQQSRELSQRHVAKRARKLKM  144 (685)
Q Consensus        68 ~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  144 (685)
                      ..|.+||.+..     ..+.+..+...+.+.+|+|||+.|+.++.+   ..|.+||+.+++.....              
T Consensus       184 ~~l~i~D~~g~-----~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~--------------  244 (433)
T PRK04922        184 YALQVADSDGY-----NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVA--------------  244 (433)
T ss_pred             EEEEEECCCCC-----CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEec--------------
Confidence            35777776532     122334567789999999999999987743   36888888665432111              


Q ss_pred             cccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEE-ecC
Q 005656          145 KEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAG  223 (685)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~d  223 (685)
                                                                             .......+..|+|+|+.+++. +.+
T Consensus       245 -------------------------------------------------------~~~g~~~~~~~SpDG~~l~~~~s~~  269 (433)
T PRK04922        245 -------------------------------------------------------SFRGINGAPSFSPDGRRLALTLSRD  269 (433)
T ss_pred             -------------------------------------------------------cCCCCccCceECCCCCEEEEEEeCC
Confidence                                                                   112234467999999988654 445


Q ss_pred             C--cEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC-CCe--EEEEECCCCceEEEeecCCceeE
Q 005656          224 G--WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-HGD--IKVWDFKGRDLKSRWEVGCSLVK  298 (685)
Q Consensus       224 g--~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-dg~--i~iwd~~~~~~~~~~~~~~~i~~  298 (685)
                      |  .|++||+.++......         .+.......+|+|+|+.++.++. +|.  |+++|+.+++.............
T Consensus       270 g~~~Iy~~d~~~g~~~~lt---------~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~  340 (433)
T PRK04922        270 GNPEIYVMDLGSRQLTRLT---------NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNAR  340 (433)
T ss_pred             CCceEEEEECCCCCeEECc---------cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccC
Confidence            5  6999999888654321         44445567899999998887763 444  77778777765443333334557


Q ss_pred             EEEeecCCEEEEEeCCC---eEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCceeeE
Q 005656          299 IVYHRVNGLLATVADDL---VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD---GSLRIWDVILARQIDA  372 (685)
Q Consensus       299 ~~~~~~~~~l~~~~~dg---~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~D---g~I~iwd~~~~~~i~~  372 (685)
                      .+|+|+|+.++..+.++   .|.+||+.+++.. .+. +........|+|||++|+..+.+   +.|.++++. +.....
T Consensus       341 ~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~  417 (433)
T PRK04922        341 ASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQR  417 (433)
T ss_pred             EEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEE
Confidence            89999999888765443   6999999888754 343 32345567999999988876653   358888875 444455


Q ss_pred             Eee-ccceEEEEEcC
Q 005656          373 IHV-DVSITALSLSP  386 (685)
Q Consensus       373 ~~~-~~~v~~v~~sp  386 (685)
                      +.. ...+...+|+|
T Consensus       418 l~~~~g~~~~p~wsp  432 (433)
T PRK04922        418 LVSADGEVREPAWSP  432 (433)
T ss_pred             cccCCCCCCCCccCC
Confidence            543 34477788876

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.69  E-value=2.7e-15  Score=147.66  Aligned_cols=182  Identities=13%  Similarity=0.140  Sum_probs=140.7

Q ss_pred             CCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEE
Q 005656          200 ENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW  279 (685)
Q Consensus       200 ~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw  279 (685)
                      .|.+.+.+-.|+|+|.-+++.+.||.|++|. ++|-.+..+.        ....+|.|++|.|+...++.|. .+.+.|=
T Consensus       102 AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~--------Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IK  171 (737)
T KOG1524|consen  102 AHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVV--------QNEESIRCARWAPNSNSIVFCQ-GGHISIK  171 (737)
T ss_pred             hhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHh--------hcCceeEEEEECCCCCceEEec-CCeEEEe
Confidence            5678888999999999999999999999998 4555554443        5667899999999987766654 3667777


Q ss_pred             ECCCCc-eEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCc
Q 005656          280 DFKGRD-LKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGS  358 (685)
Q Consensus       280 d~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~  358 (685)
                      .+.... +++--.|++-|.++.|++.++++++|+.|...+|||-. |+.+..-..|..+|++++|.|+ +.++.+|. ++
T Consensus       172 pL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt  248 (737)
T KOG1524|consen  172 PLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NT  248 (737)
T ss_pred             ecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeee-ee
Confidence            766444 44444556889999999999999999999999999965 5666667789999999999999 55666653 34


Q ss_pred             EEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEE
Q 005656          359 LRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLW  404 (685)
Q Consensus       359 I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW  404 (685)
                      .|+=..          .-+.|..++||+||..++.|+..|..|.-+
T Consensus       249 ~R~~~p----------~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~  284 (737)
T KOG1524|consen  249 ARFSSP----------RVGSIFNLSWSADGTQATCGTSTGQLIVAY  284 (737)
T ss_pred             eeecCC----------CccceEEEEEcCCCceeeccccCceEEEee
Confidence            551111          123488999999999999999887444434

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.68  E-value=5.2e-15  Score=137.12  Aligned_cols=244  Identities=12%  Similarity=0.111  Sum_probs=183.7

Q ss_pred             cccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecC
Q 005656           45 HDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQD  124 (685)
Q Consensus        45 h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~  124 (685)
                      -..+|+|.+|++|+..+|.+-....|.||..... ..++..+++..|...|++|+|+|.++.|++|+.|..-.+|....+
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~-~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~   87 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGA-DLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG   87 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCC-CCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence            3578999999999999999999999999987654 346788899999999999999999999999999999999976322


Q ss_pred             ce-eeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCC
Q 005656          125 QQ-SRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT  203 (685)
Q Consensus       125 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  203 (685)
                      .. ..++                                                                         
T Consensus        88 ~~Wkptl-------------------------------------------------------------------------   94 (361)
T KOG1523|consen   88 GTWKPTL-------------------------------------------------------------------------   94 (361)
T ss_pred             Ceeccce-------------------------------------------------------------------------
Confidence            11 0000                                                                         


Q ss_pred             CeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005656          204 AVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG  283 (685)
Q Consensus       204 ~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~  283 (685)
                                                                 ....++..++++.|+|.++.|++|+....|.+|-++.
T Consensus        95 -------------------------------------------vLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~  131 (361)
T KOG1523|consen   95 -------------------------------------------VLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQ  131 (361)
T ss_pred             -------------------------------------------eEEEeccceeeEeecCcCceEEeccCccEEEEEEEec
Confidence                                                       0116777888899999888899888888888888765


Q ss_pred             CceE-----EEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcC-----C-------------CeeEEEEecCCCCeEE
Q 005656          284 RDLK-----SRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVV-----A-------------LRMVRKFEGHTDRITD  340 (685)
Q Consensus       284 ~~~~-----~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~-----~-------------~~~~~~~~~h~~~I~~  340 (685)
                      ..--     ......+.|+++.|+|++-+|++|+.|+..+||..-     .             |+++.++....+.|..
T Consensus       132 ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~  211 (361)
T KOG1523|consen  132 ENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHG  211 (361)
T ss_pred             ccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceee
Confidence            4322     122334789999999999999999999999998631     1             2344455456678999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcCCCc-eeeEE-eeccceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656          341 FCFSEDGKWLLSSGMDGSLRIWDVILAR-QIDAI-HVDVSITALSLSPNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       341 l~~spdg~~l~s~s~Dg~I~iwd~~~~~-~i~~~-~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~  405 (685)
                      +.|+|+|..|+-.+.|+++.+=|..... .+... ..+-+..++.|-.+...++++..-+-.++..+
T Consensus       212 v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag~~c~P~lf~~~  278 (361)
T KOG1523|consen  212 VLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVVAAGYDCGPVLFVTD  278 (361)
T ss_pred             eEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCCceeecCCCCCceEEEec
Confidence            9999999999999999999999976654 23333 23456788888777665555543233444443

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.68  E-value=4e-16  Score=151.09  Aligned_cols=264  Identities=15%  Similarity=0.210  Sum_probs=206.3

Q ss_pred             EEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCcee
Q 005656            6 TALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL   85 (685)
Q Consensus         6 ~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~   85 (685)
                      ..+.++.+|+ .|+.|+..|.|..+|+.++++...+.  -...|..+.|..+.+++|++- .+.+.|||-..     ..+
T Consensus       133 Y~~~ytrnGr-hlllgGrKGHlAa~Dw~t~~L~~Ei~--v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~G-----tEl  203 (545)
T KOG1272|consen  133 YHLDYTRNGR-HLLLGGRKGHLAAFDWVTKKLHFEIN--VMETVRDVTFLHNEQFFAVAQ-KKYVYVYDNNG-----TEL  203 (545)
T ss_pred             eeeeecCCcc-EEEecCCccceeeeecccceeeeeee--hhhhhhhhhhhcchHHHHhhh-hceEEEecCCC-----cEE
Confidence            4678899999 78888899999999999999998886  567899999999998888875 45788886332     445


Q ss_pred             EecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccccccc
Q 005656           86 RFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRER  165 (685)
Q Consensus        86 ~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (685)
                      ..++.| ..|..+.|.|.--+|++++..|.++.-|+.+++.+..+.                                  
T Consensus       204 HClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~----------------------------------  248 (545)
T KOG1272|consen  204 HCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIR----------------------------------  248 (545)
T ss_pred             eehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHH----------------------------------
Confidence            555444 468999999998888999999999999999988766553                                  


Q ss_pred             CCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccc
Q 005656          166 DWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSE  245 (685)
Q Consensus       166 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~  245 (685)
                                                        ...+.+..++-+|-+..+-+|..+|+|.+|...+......+.    
T Consensus       249 ----------------------------------t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiL----  290 (545)
T KOG1272|consen  249 ----------------------------------TGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKIL----  290 (545)
T ss_pred             ----------------------------------ccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHH----
Confidence                                              335567777888888899999999999999999988887765    


Q ss_pred             cccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEc-CC
Q 005656          246 RSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDV-VA  324 (685)
Q Consensus       246 ~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~-~~  324 (685)
                          .|.++|.+++++++|++++|+|.|..++|||++....+.++..+.+...+++|..| +||++ ....|.||.- -.
T Consensus       291 ----cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg-lLA~~-~G~~v~iw~d~~~  364 (545)
T KOG1272|consen  291 ----CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG-LLALS-YGDHVQIWKDALK  364 (545)
T ss_pred             ----hcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc-ceeee-cCCeeeeehhhhc
Confidence                89999999999999999999999999999999988777777767788888888544 44444 3457888842 22


Q ss_pred             Ce--eEEEEecC--CCCeEEEEEcCCCCEEEEEeCCC
Q 005656          325 LR--MVRKFEGH--TDRITDFCFSEDGKWLLSSGMDG  357 (685)
Q Consensus       325 ~~--~~~~~~~h--~~~I~~l~~spdg~~l~s~s~Dg  357 (685)
                      +.  .-..+-.|  .++|.++.|.|-...|-.|-.-|
T Consensus       365 ~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G  401 (545)
T KOG1272|consen  365 GSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG  401 (545)
T ss_pred             CCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence            11  11111112  34788888888766666655444

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=3.1e-14  Score=150.06  Aligned_cols=233  Identities=8%  Similarity=0.043  Sum_probs=159.9

Q ss_pred             cEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEec---CCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEec
Q 005656           26 VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS---ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA  102 (685)
Q Consensus        26 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s---~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~  102 (685)
                      .|.+||..........  .+...+.+.+|+|||+.|+..+   .+..+.+|++..+  ..+.+....+   .+....|+|
T Consensus       180 ~l~~~d~dg~~~~~lt--~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G--~~~~l~~~~~---~~~~~~~SP  252 (429)
T PRK03629        180 ELRVSDYDGYNQFVVH--RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG--AVRQVASFPR---HNGAPAFSP  252 (429)
T ss_pred             eEEEEcCCCCCCEEee--cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCC--CeEEccCCCC---CcCCeEECC
Confidence            6999998876554433  4667899999999999888654   2456888887654  2233333333   345689999


Q ss_pred             CCCEEEEE-eCCC--ceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCce
Q 005656          103 NGRHILSA-GQDR--AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQ  179 (685)
Q Consensus       103 ~~~~l~s~-s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (685)
                      ||+.|+.. +.+|  .|.+||+.++......                                                 
T Consensus       253 DG~~La~~~~~~g~~~I~~~d~~tg~~~~lt-------------------------------------------------  283 (429)
T PRK03629        253 DGSKLAFALSKTGSLNLYVMDLASGQIRQVT-------------------------------------------------  283 (429)
T ss_pred             CCCEEEEEEcCCCCcEEEEEECCCCCEEEcc-------------------------------------------------
Confidence            99988865 4455  4777777655322111                                                 


Q ss_pred             EEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecC-C--cEEEEECCCCccccccccccccccCCCCcCEE
Q 005656          180 AYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG-G--WIERFNLQSGISRGSYLDMSERSNYAHNGEVV  256 (685)
Q Consensus       180 ~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d-g--~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~  256 (685)
                                          .....+....|+|+|+.++..+.. |  .|+++|+.++......         .+.....
T Consensus       284 --------------------~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt---------~~~~~~~  334 (429)
T PRK03629        284 --------------------DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRIT---------WEGSQNQ  334 (429)
T ss_pred             --------------------CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEee---------cCCCCcc
Confidence                                122345678999999999877764 3  5666677766543221         2333456


Q ss_pred             EEEEcCCCCEEEEEECC---CeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCe---EEEEEcCCCeeEEE
Q 005656          257 GVACDSTNTLMISAGYH---GDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLV---IRLFDVVALRMVRK  330 (685)
Q Consensus       257 ~l~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~---I~i~d~~~~~~~~~  330 (685)
                      ...|+|+|++++..+.+   ..|.+||+.++.... +..........|+|||++|+.++.++.   +.++++ +++..+.
T Consensus       335 ~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~  412 (429)
T PRK03629        335 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKAR  412 (429)
T ss_pred             CEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEE
Confidence            78899999998876643   358899998886543 322333456789999999998887764   677777 4666677


Q ss_pred             EecCCCCeEEEEEcC
Q 005656          331 FEGHTDRITDFCFSE  345 (685)
Q Consensus       331 ~~~h~~~I~~l~~sp  345 (685)
                      +.+|.+.+...+|+|
T Consensus       413 l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        413 LPATDGQVKFPAWSP  427 (429)
T ss_pred             CccCCCCcCCcccCC
Confidence            888889999999997

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=3.8e-14  Score=133.34  Aligned_cols=262  Identities=19%  Similarity=0.283  Sum_probs=165.5

Q ss_pred             CCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCee------------eEEee-cccccCeeEEEEeCCCcEEEEecC-C
Q 005656            2 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL------------QSVIR-EAHDNAIISLHFFANEPVLMSASA-D   67 (685)
Q Consensus         2 ~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~------------~~~~~-~~h~~~V~~l~~sp~~~~l~s~s~-D   67 (685)
                      +..|+|++|.|.+..-|++|+..| |.+|.....-.            ...++ .+| .+|+++.|.+||..+++++. |
T Consensus       140 QrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gs  217 (445)
T KOG2139|consen  140 QRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGS  217 (445)
T ss_pred             hcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCc
Confidence            346999999998877899998766 99998653211            11222 144 68999999999999999986 6


Q ss_pred             CcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccccc
Q 005656           68 NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEE  147 (685)
Q Consensus        68 ~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (685)
                      ..|.|||.+++...+-.    ....+.+.-+.|+|||.+|+.++-|+..++|............                
T Consensus       218 ssi~iWdpdtg~~~pL~----~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~----------------  277 (445)
T KOG2139|consen  218 SSIMIWDPDTGQKIPLI----PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWI----------------  277 (445)
T ss_pred             ceEEEEcCCCCCccccc----ccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceeccee----------------
Confidence            78999999988543322    2335668889999999999999999999999643221111000                


Q ss_pred             ccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEE
Q 005656          148 ELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIE  227 (685)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~  227 (685)
                                                                          ...+.|...+|+|+|.+++...... -.
T Consensus       278 ----------------------------------------------------lgsgrvqtacWspcGsfLLf~~sgs-p~  304 (445)
T KOG2139|consen  278 ----------------------------------------------------LGSGRVQTACWSPCGSFLLFACSGS-PR  304 (445)
T ss_pred             ----------------------------------------------------ccCCceeeeeecCCCCEEEEEEcCC-ce
Confidence                                                                2244899999999999988766432 22


Q ss_pred             EEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEE-EEECCCeEEEEECCCCceEE-EeecCCceeEEEEeecC
Q 005656          228 RFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMI-SAGYHGDIKVWDFKGRDLKS-RWEVGCSLVKIVYHRVN  305 (685)
Q Consensus       228 ~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~s~dg~i~iwd~~~~~~~~-~~~~~~~i~~~~~~~~~  305 (685)
                                                 +.++.|+.....+. .++.....-+-|+..-.... .....+++.+++|.|.|
T Consensus       305 ---------------------------lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsG  357 (445)
T KOG2139|consen  305 ---------------------------LYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSG  357 (445)
T ss_pred             ---------------------------EEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCC
Confidence                                       33333332211111 12222222333332111000 11124678999999999


Q ss_pred             CEEEEEeCCC--------eEEEEEcCCCeeEEEEe-c--CCCCeEEEEEcC---CCCEEEEEeCCCcEEEEEcC
Q 005656          306 GLLATVADDL--------VIRLFDVVALRMVRKFE-G--HTDRITDFCFSE---DGKWLLSSGMDGSLRIWDVI  365 (685)
Q Consensus       306 ~~l~~~~~dg--------~I~i~d~~~~~~~~~~~-~--h~~~I~~l~~sp---dg~~l~s~s~Dg~I~iwd~~  365 (685)
                      .+||+....+        .|.+||.+..-.+.-.. |  .......++|+|   +|++|..+=..|.+.-|++.
T Consensus       358 eyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  358 EYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             CEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence            9999986544        36677766543332221 1  112245667776   56667666667777777653

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.66  E-value=7.7e-15  Score=134.01  Aligned_cols=239  Identities=17%  Similarity=0.252  Sum_probs=170.0

Q ss_pred             CCCcEEEEEEccCCC----CEEEEEeCCCcEEEEeCCC--Cee--eEEe----ecccccCeeEEEEeC-CCcEEEEecCC
Q 005656            1 MRGAVTALAFSSDGQ----PLLASGASSGVISIWNLEK--RRL--QSVI----REAHDNAIISLHFFA-NEPVLMSASAD   67 (685)
Q Consensus         1 h~~~V~~l~fspdg~----~~latg~~dg~I~vwd~~~--~~~--~~~~----~~~h~~~V~~l~~sp-~~~~l~s~s~D   67 (685)
                      |.=|++.+.|.|+..    .+|||.+  ..+++|.+..  .+.  ...+    ...+.+++++..|+. +-+++.++|-|
T Consensus        95 ~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiD  172 (364)
T KOG0290|consen   95 HPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSID  172 (364)
T ss_pred             CCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeeccc
Confidence            445789999999862    3777654  5799998873  221  1111    124678999999997 45688999999


Q ss_pred             CcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCC-CEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccc
Q 005656           68 NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKE  146 (685)
Q Consensus        68 ~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (685)
                      .+..|||+.++. .......+-.|...|..|+|...+ +.++++|.||.+|+||++.-.-...+-.              
T Consensus       173 TTCTiWdie~~~-~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE--------------  237 (364)
T KOG0290|consen  173 TTCTIWDIETGV-SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYE--------------  237 (364)
T ss_pred             CeEEEEEEeecc-ccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEec--------------
Confidence            999999999861 123445567899999999999864 4788999999999999976543332210              


Q ss_pred             cccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccC-CCEEEEEe-cCC
Q 005656          147 EELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC-GNFAVLGT-AGG  224 (685)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~-~dg  224 (685)
                                                                         .+....+...++|++. -+++++-. ...
T Consensus       238 ---------------------------------------------------~p~~~~pLlRLswnkqDpnymATf~~dS~  266 (364)
T KOG0290|consen  238 ---------------------------------------------------DPSPSTPLLRLSWNKQDPNYMATFAMDSN  266 (364)
T ss_pred             ---------------------------------------------------CCCCCCcceeeccCcCCchHHhhhhcCCc
Confidence                                                               0012445667777764 35555543 445


Q ss_pred             cEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCC-CEEEEEECCCeEEEEECCCCc------eEEEeecCCcee
Q 005656          225 WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRD------LKSRWEVGCSLV  297 (685)
Q Consensus       225 ~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~------~~~~~~~~~~i~  297 (685)
                      .|.+.|++.......       ...+|.+.|.+++|.|.. ..|.++|.|..+.+||+...-      ++..+..++.|.
T Consensus       267 ~V~iLDiR~P~tpva-------~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVN  339 (364)
T KOG0290|consen  267 KVVILDIRVPCTPVA-------RLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVN  339 (364)
T ss_pred             eEEEEEecCCCccee-------hhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceee
Confidence            799999986543222       223999999999999965 689999999999999997532      233444568899


Q ss_pred             EEEEeec-CCEEEEEeCC
Q 005656          298 KIVYHRV-NGLLATVADD  314 (685)
Q Consensus       298 ~~~~~~~-~~~l~~~~~d  314 (685)
                      .+.|++. +.+++++...
T Consensus       340 qi~Ws~~~~Dwiai~~~k  357 (364)
T KOG0290|consen  340 QIQWSSSQPDWIAICFGK  357 (364)
T ss_pred             eeeecccCCCEEEEEecC
Confidence            9999964 5588877643

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.66  E-value=1.9e-13  Score=136.20  Aligned_cols=315  Identities=13%  Similarity=0.188  Sum_probs=207.2

Q ss_pred             cEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEe-----cCC-----CcEEEE
Q 005656            4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA-----SAD-----NSIKMW   73 (685)
Q Consensus         4 ~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~-----s~D-----~~v~iW   73 (685)
                      +++..++|++|+ ++|.+. ++.++|++..++..+.+..   ...++++.|+|-+.+|.|-     ..+     -.+++|
T Consensus        36 ~~~v~~~S~~G~-lfA~~~-~~~v~i~~~~~~~~~lt~~---~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~  110 (566)
T KOG2315|consen   36 PCNVFAYSNNGR-LFAYSD-NQVVKVFEIATLKVVLCVE---LKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY  110 (566)
T ss_pred             cceeEEEcCCCc-EEEEEc-CCeEEEEEccCCcEEEEec---cceeeeeeecccccccccccccccccCCCCCCCceeee
Confidence            356788999998 777654 6789999999886544443   2278999999999998873     122     346799


Q ss_pred             EecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCc
Q 005656           74 IFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKP  153 (685)
Q Consensus        74 d~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (685)
                      ++.++    .....+......-++..|+.|..+.+ --..+.+.+|++...+....-                       
T Consensus       111 ~vet~----~~~s~~q~k~Q~~W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~~k-----------------------  162 (566)
T KOG2315|consen  111 NVETG----VQRSQIQKKMQNGWVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQHK-----------------------  162 (566)
T ss_pred             eeccc----eehhheehhhhcCcccccccchhhhh-hhhcceEEEEecCCccceeee-----------------------
Confidence            88874    22222222222226889998864332 222456888887552211100                       


Q ss_pred             eeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCC--CEEEE-----EecCCcE
Q 005656          154 VIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG--NFAVL-----GTAGGWI  226 (685)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~-----g~~dg~i  226 (685)
                                                                    -+...+..+.+||.+  .++++     ++.-+.|
T Consensus       163 ----------------------------------------------l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~v  196 (566)
T KOG2315|consen  163 ----------------------------------------------LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASV  196 (566)
T ss_pred             ----------------------------------------------eeccceeeEEecCCCCCceEEEEccCCCCCCcEE
Confidence                                                          234557777777753  33333     2344578


Q ss_pred             EEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCE-E--EEEECC---------CeEEEEECCCCceEEEeecCC
Q 005656          227 ERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTL-M--ISAGYH---------GDIKVWDFKGRDLKSRWEVGC  294 (685)
Q Consensus       227 ~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-l--~s~s~d---------g~i~iwd~~~~~~~~~~~~~~  294 (685)
                      ++|...-..........   .  -....-..+.|++.|+- |  ++...|         .++++.++.+......+...+
T Consensus       197 ri~~~~~~~~~~~~a~k---s--FFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~G  271 (566)
T KOG2315|consen  197 RIYKYPEEGQHQPVANK---S--FFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEG  271 (566)
T ss_pred             EEeccccccccchhhhc---c--ccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCC
Confidence            88877632222111100   0  01122235677776653 2  222233         368888888666666777789


Q ss_pred             ceeEEEEeecCCEEEEE--eCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCce
Q 005656          295 SLVKIVYHRVNGLLATV--ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM---DGSLRIWDVILARQ  369 (685)
Q Consensus       295 ~i~~~~~~~~~~~l~~~--~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~---Dg~I~iwd~~~~~~  369 (685)
                      +|.++.|+|+++-++++  -.=.++.|||++ +.++..|  ..++=+++-|+|.|++|+.+|-   -|.|-|||+.+.++
T Consensus       272 PVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~  348 (566)
T KOG2315|consen  272 PVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKL  348 (566)
T ss_pred             CceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhh
Confidence            99999999999866554  445689999986 4555554  4567788999999999998874   48899999999888


Q ss_pred             eeEEeeccceEEEEEcCCCCeEEEEEeC-----CCeEEEEEc
Q 005656          370 IDAIHVDVSITALSLSPNMDVLATAHVD-----QNGVYLWVN  406 (685)
Q Consensus       370 i~~~~~~~~v~~v~~spdg~~Lat~~~d-----~~~I~lW~~  406 (685)
                      +..+.... .+-+.|+|||++++|++..     +|+++||+.
T Consensus       349 i~~~~a~~-tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy  389 (566)
T KOG2315|consen  349 IAKFKAAN-TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY  389 (566)
T ss_pred             ccccccCC-ceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence            88776543 4567999999999999865     468999984

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=4e-14  Score=149.21  Aligned_cols=232  Identities=12%  Similarity=0.072  Sum_probs=155.7

Q ss_pred             cEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeC---CCceEEEEeecCceeeEechhhHHHHHhhcccc
Q 005656           69 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ---DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK  145 (685)
Q Consensus        69 ~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  145 (685)
                      .|.+||.+...  .+.   +..+...+.+.+|+|||+.|+..+.   +..|.+|++.+++.....               
T Consensus       180 ~l~~~d~dg~~--~~~---lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~---------------  239 (429)
T PRK03629        180 ELRVSDYDGYN--QFV---VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA---------------  239 (429)
T ss_pred             eEEEEcCCCCC--CEE---eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc---------------
Confidence            56777665432  122   2345678999999999999887643   346788887655421111               


Q ss_pred             ccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEE-ecCC
Q 005656          146 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAGG  224 (685)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~dg  224 (685)
                                                                            ..........|+|+|+.++.. ..+|
T Consensus       240 ------------------------------------------------------~~~~~~~~~~~SPDG~~La~~~~~~g  265 (429)
T PRK03629        240 ------------------------------------------------------SFPRHNGAPAFSPDGSKLAFALSKTG  265 (429)
T ss_pred             ------------------------------------------------------CCCCCcCCeEECCCCCEEEEEEcCCC
Confidence                                                                  112233457999999988865 3344


Q ss_pred             --cEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC-C--eEEEEECCCCceEEEeecCCceeEE
Q 005656          225 --WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH-G--DIKVWDFKGRDLKSRWEVGCSLVKI  299 (685)
Q Consensus       225 --~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d-g--~i~iwd~~~~~~~~~~~~~~~i~~~  299 (685)
                        .|++||+.++......         .+...+....|+|+|+.|+.++.+ |  .|+++|+.++...............
T Consensus       266 ~~~I~~~d~~tg~~~~lt---------~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~  336 (429)
T PRK03629        266 SLNLYVMDLASGQIRQVT---------DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDA  336 (429)
T ss_pred             CcEEEEEECCCCCEEEcc---------CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCE
Confidence              5999999887654332         334567789999999988877754 4  4555577776554433333455678


Q ss_pred             EEeecCCEEEEEeCC---CeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCc---EEEEEcCCCceeeEE
Q 005656          300 VYHRVNGLLATVADD---LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGS---LRIWDVILARQIDAI  373 (685)
Q Consensus       300 ~~~~~~~~l~~~~~d---g~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~---I~iwd~~~~~~i~~~  373 (685)
                      .|+|+|++++..+.+   ..|++||+.+++.. .+... .......|+|||++|+.++.++.   +.++++ +|.....+
T Consensus       337 ~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l  413 (429)
T PRK03629        337 DVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARL  413 (429)
T ss_pred             EECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEEC
Confidence            999999988876543   36889999888643 34322 23446789999999999887764   677777 45555555


Q ss_pred             ee-ccceEEEEEcC
Q 005656          374 HV-DVSITALSLSP  386 (685)
Q Consensus       374 ~~-~~~v~~v~~sp  386 (685)
                      .. ...+...+|+|
T Consensus       414 ~~~~~~~~~p~Wsp  427 (429)
T PRK03629        414 PATDGQVKFPAWSP  427 (429)
T ss_pred             ccCCCCcCCcccCC
Confidence            54 44588889987

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.66  E-value=1.8e-12  Score=132.90  Aligned_cols=285  Identities=16%  Similarity=0.206  Sum_probs=187.4

Q ss_pred             EEEEeCC----CcEEEEeC--CCCeeeEEeecccccCeeEEEEeCCCcEEEEecC----CCcEEEEEecCCCCCCceeEe
Q 005656           18 LASGASS----GVISIWNL--EKRRLQSVIREAHDNAIISLHFFANEPVLMSASA----DNSIKMWIFDTTDGDPRLLRF   87 (685)
Q Consensus        18 latg~~d----g~I~vwd~--~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~----D~~v~iWd~~~~~~~~~~~~~   87 (685)
                      +++|++.    +.|.+|++  +++++...-...-......++++|++++|.++..    ++.|..|.++...+....+..
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~   81 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS   81 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence            4556655    68999988  5565543322134456678999999999988866    579999998876454455555


Q ss_pred             cccCCCCCeEEEEecCCCEEEEEeC-CCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccC
Q 005656           88 RSGHSAPPLCIRFYANGRHILSAGQ-DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERD  166 (685)
Q Consensus        88 ~~~h~~~v~~i~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (685)
                      .......+..++++|++++|+++.. +|.|.++++...........                                  
T Consensus        82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~----------------------------------  127 (345)
T PF10282_consen   82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQ----------------------------------  127 (345)
T ss_dssp             EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEE----------------------------------
T ss_pred             eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeee----------------------------------
Confidence            4435566788999999999998875 78999999876432221100                                  


Q ss_pred             CcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccccccc
Q 005656          167 WCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSER  246 (685)
Q Consensus       167 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~  246 (685)
                                                                                   ++... +.-..        
T Consensus       128 -------------------------------------------------------------~~~~~-g~g~~--------  137 (345)
T PF10282_consen  128 -------------------------------------------------------------TVRHE-GSGPN--------  137 (345)
T ss_dssp             -------------------------------------------------------------EEESE-EEESS--------
T ss_pred             -------------------------------------------------------------ecccC-CCCCc--------
Confidence                                                                         00000 00000        


Q ss_pred             ccCCCCcCEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCc--eEE----EeecCCceeEEEEeecCCEEEEEe-CCCeEE
Q 005656          247 SNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRD--LKS----RWEVGCSLVKIVYHRVNGLLATVA-DDLVIR  318 (685)
Q Consensus       247 ~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~--~~~----~~~~~~~i~~~~~~~~~~~l~~~~-~dg~I~  318 (685)
                      ..........++.++|+++++++.. ....|.+|++....  +..    .+........++|+|+++++++.. .++.|.
T Consensus       138 ~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~  217 (345)
T PF10282_consen  138 PDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVS  217 (345)
T ss_dssp             TTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred             ccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEE
Confidence            0002234466788899988887765 34578888887654  322    234457889999999999776665 477899


Q ss_pred             EEEcC--CCe--eEEEEec----C--CCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcC--CCce--eeEEeeccc-eEEE
Q 005656          319 LFDVV--ALR--MVRKFEG----H--TDRITDFCFSEDGKWLLSSG-MDGSLRIWDVI--LARQ--IDAIHVDVS-ITAL  382 (685)
Q Consensus       319 i~d~~--~~~--~~~~~~~----h--~~~I~~l~~spdg~~l~s~s-~Dg~I~iwd~~--~~~~--i~~~~~~~~-v~~v  382 (685)
                      +|++.  ++.  .+..+..    .  ......++++|||++|+++. ..++|.+|++.  +|.+  +..+..... .+.+
T Consensus       218 v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~  297 (345)
T PF10282_consen  218 VFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHF  297 (345)
T ss_dssp             EEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEE
T ss_pred             EEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEE
Confidence            99988  443  3333331    1  12578999999999988765 56789999993  3433  344444334 9999


Q ss_pred             EEcCCCCeEEEEEeCCCeEEEEEc
Q 005656          383 SLSPNMDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       383 ~~spdg~~Lat~~~d~~~I~lW~~  406 (685)
                      +++|+|++|++++.+++.|.+|+.
T Consensus       298 ~~s~~g~~l~Va~~~s~~v~vf~~  321 (345)
T PF10282_consen  298 AFSPDGRYLYVANQDSNTVSVFDI  321 (345)
T ss_dssp             EE-TTSSEEEEEETTTTEEEEEEE
T ss_pred             EEeCCCCEEEEEecCCCeEEEEEE
Confidence            999999999999999889999974

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=1.8e-13  Score=144.42  Aligned_cols=219  Identities=12%  Similarity=0.074  Sum_probs=143.6

Q ss_pred             cccCCCCCeEEEEecCCCEEEEEeCC---CceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccc
Q 005656           88 RSGHSAPPLCIRFYANGRHILSAGQD---RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE  164 (685)
Q Consensus        88 ~~~h~~~v~~i~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (685)
                      +..+...+.+.+|+|||+.|+.++.+   ..|.+||+.+++.....                                  
T Consensus       191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~----------------------------------  236 (427)
T PRK02889        191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVA----------------------------------  236 (427)
T ss_pred             eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEee----------------------------------
Confidence            34677889999999999999887643   35888898766432211                                  


Q ss_pred             cCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEE-EecCCcEEE--EECCCCccccccc
Q 005656          165 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL-GTAGGWIER--FNLQSGISRGSYL  241 (685)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-g~~dg~i~~--~d~~~~~~~~~~~  241 (685)
                                                         .......+..|+|+|+.++. .+.+|...+  +|+.++... .+.
T Consensus       237 -----------------------------------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt  280 (427)
T PRK02889        237 -----------------------------------NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLR-RLT  280 (427)
T ss_pred             -----------------------------------cCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcE-ECC
Confidence                                               12234557899999998875 566776444  455555432 221


Q ss_pred             cccccccCCCCcCEEEEEEcCCCCEEEEEEC-CCeEEEEE--CCCCceEEEeecCCceeEEEEeecCCEEEEEeCCC---
Q 005656          242 DMSERSNYAHNGEVVGVACDSTNTLMISAGY-HGDIKVWD--FKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDL---  315 (685)
Q Consensus       242 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-dg~i~iwd--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---  315 (685)
                              .+.+......|+|+|+.++..+. +|...+|.  +.++................|+|+|++++..+.++   
T Consensus       281 --------~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~  352 (427)
T PRK02889        281 --------QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAF  352 (427)
T ss_pred             --------CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcE
Confidence                    34445567889999998876654 45556665  44554433222223344678999999988777654   


Q ss_pred             eEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCceeeEEeec-cceEEEEEcCC
Q 005656          316 VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG---SLRIWDVILARQIDAIHVD-VSITALSLSPN  387 (685)
Q Consensus       316 ~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg---~I~iwd~~~~~~i~~~~~~-~~v~~v~~spd  387 (685)
                      .|++||+.+++... +..+ .......|+|||++|+.++.++   .+.+.++ +|.....+..+ ..+...+|+|-
T Consensus       353 ~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        353 KLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             EEEEEECCCCCeEE-ccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence            69999999887543 3322 3346789999999998777544   3555565 46555555543 44777888873

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.66  E-value=1.9e-14  Score=134.51  Aligned_cols=327  Identities=17%  Similarity=0.256  Sum_probs=208.1

Q ss_pred             CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe-----eeEEeecccc------------cCeeEEEEeCCCc--EEEE
Q 005656            3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-----LQSVIREAHD------------NAIISLHFFANEP--VLMS   63 (685)
Q Consensus         3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~-----~~~~~~~~h~------------~~V~~l~~sp~~~--~l~s   63 (685)
                      +-|.++.|..+|. +||||..+|.|.++.-+...     ....++ .|.            ..|..+.|.++++  .++.
T Consensus        26 diis~vef~~~Ge-~LatGdkgGRVv~f~r~~~~~~ey~~~t~fq-shepEFDYLkSleieEKinkIrw~~~~n~a~FLl  103 (433)
T KOG1354|consen   26 DIISAVEFDHYGE-RLATGDKGGRVVLFEREKLYKGEYNFQTEFQ-SHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL  103 (433)
T ss_pred             cceeeEEeecccc-eEeecCCCCeEEEeecccccccceeeeeeee-ccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence            3589999999999 99999999999999654322     233333 453            4688999999765  5666


Q ss_pred             ecCCCcEEEEEecCCCCCC-------------------------------ceeE-ecccCCCCCeEEEEecCCCEEEEEe
Q 005656           64 ASADNSIKMWIFDTTDGDP-------------------------------RLLR-FRSGHSAPPLCIRFYANGRHILSAG  111 (685)
Q Consensus        64 ~s~D~~v~iWd~~~~~~~~-------------------------------~~~~-~~~~h~~~v~~i~~~~~~~~l~s~s  111 (685)
                      .+.|.+|++|.+.......                               .+.+ .-.+|..-|++|.++.|...++++.
T Consensus       104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD  183 (433)
T KOG1354|consen  104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD  183 (433)
T ss_pred             ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc
Confidence            6789999999876532211                               0000 1246788899999999988888765


Q ss_pred             CCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccC
Q 005656          112 QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLG  191 (685)
Q Consensus       112 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~  191 (685)
                       |=.|.+|+++-..+...+                                                    -|+....+.
T Consensus       184 -dLRINLWnlei~d~sFnI----------------------------------------------------VDIKP~nmE  210 (433)
T KOG1354|consen  184 -DLRINLWNLEIIDQSFNI----------------------------------------------------VDIKPANME  210 (433)
T ss_pred             -ceeeeeccccccCCceeE----------------------------------------------------EEccccCHH
Confidence             677999988643322221                                                    111111110


Q ss_pred             ceeecCCCCCCCCeEEEEEccC-CCEEEEEecCCcEEEEECCCCccccc----ccccc----ccccCCCCcCEEEEEEcC
Q 005656          192 EHILRPCPENPTAVKACTISAC-GNFAVLGTAGGWIERFNLQSGISRGS----YLDMS----ERSNYAHNGEVVGVACDS  262 (685)
Q Consensus       192 ~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~dg~i~~~d~~~~~~~~~----~~~~~----~~~~~~h~~~v~~l~~~~  262 (685)
                              ....-|++..|+|. .+.++..++.|.|++.|++.......    +....    ......--..|..+.|++
T Consensus       211 --------eLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~  282 (433)
T KOG1354|consen  211 --------ELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSH  282 (433)
T ss_pred             --------HHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEcc
Confidence                    11234677788884 46777888899999999985432211    11000    000112235788999999


Q ss_pred             CCCEEEEEECCCeEEEEECC-CCceEEEeecCC----------------ceeEEEEeecCCEEEEEeCCCeEEEEEcCCC
Q 005656          263 TNTLMISAGYHGDIKVWDFK-GRDLKSRWEVGC----------------SLVKIVYHRVNGLLATVADDLVIRLFDVVAL  325 (685)
Q Consensus       263 ~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~----------------~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~  325 (685)
                      +|+++++-+. -+|++||+. ..+++.+++.+.                .-..++|+-++.++++|+..+.+++|+...|
T Consensus       283 sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  283 SGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             CCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence            9999988654 689999994 556666665431                1245788888889999999999999997766


Q ss_pred             ee-EEEEecCCCC--eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEE
Q 005656          326 RM-VRKFEGHTDR--ITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVY  402 (685)
Q Consensus       326 ~~-~~~~~~h~~~--I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~  402 (685)
                      .. -.++......  +..+   ..-+.+.+++......+       -+..+.....+...+|+|..+.+|++..+  .++
T Consensus       362 sk~d~tl~asr~~~~~~~~---~k~~~V~~~g~r~~~~~-------~vd~ldf~kkilh~aWhp~en~ia~aatn--nly  429 (433)
T KOG1354|consen  362 SKEDFTLEASRKNMKPRKV---LKLRLVSSSGKRKRDEI-------SVDALDFRKKILHTAWHPKENSIAVAATN--NLY  429 (433)
T ss_pred             cceeecccccccCCccccc---ccceeeecCCCcccccc-------ccchhhhhhHHHhhccCCccceeeeeecC--ceE
Confidence            32 2222222111  1111   11234444444433222       22333444457788999999999999866  577


Q ss_pred             EEE
Q 005656          403 LWV  405 (685)
Q Consensus       403 lW~  405 (685)
                      +|.
T Consensus       430 if~  432 (433)
T KOG1354|consen  430 IFQ  432 (433)
T ss_pred             Eec
Confidence            763

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.65  E-value=1.8e-14  Score=137.06  Aligned_cols=273  Identities=13%  Similarity=0.169  Sum_probs=195.5

Q ss_pred             CcEEEEEEccCCCCEEEEEe-CCCcEEEEeCCCCeeeEEe-----ecccccCeeEEEEeCCCcEEEEecCCCcEEEEEec
Q 005656            3 GAVTALAFSSDGQPLLASGA-SSGVISIWNLEKRRLQSVI-----REAHDNAIISLHFFANEPVLMSASADNSIKMWIFD   76 (685)
Q Consensus         3 ~~V~~l~fspdg~~~latg~-~dg~I~vwd~~~~~~~~~~-----~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~   76 (685)
                      ..|++++|..|++.-+..+. .+..+..++.....+...+     .....++|..++..  ...|++|-.+|.+.+|...
T Consensus        56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k  133 (412)
T KOG3881|consen   56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDK  133 (412)
T ss_pred             hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEecc
Confidence            35788888877764344444 6667777777766655443     12456777777765  3378888889999999887


Q ss_pred             CCCCCCceeEecccCCCCCeEEEEecCCCEE-EEEeCC--CceEEEEeecCceeeEechhhHHHHHhhccccccccccCc
Q 005656           77 TTDGDPRLLRFRSGHSAPPLCIRFYANGRHI-LSAGQD--RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKP  153 (685)
Q Consensus        77 ~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l-~s~s~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (685)
                      .++.....+..+..+ .++..+.-++...++ ++||..  ..+.+||+...+++..                        
T Consensus       134 ~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~------------------------  188 (412)
T KOG3881|consen  134 SGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWS------------------------  188 (412)
T ss_pred             CCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeee------------------------
Confidence            654222233333222 445556666654444 457777  7888999876633221                        


Q ss_pred             eeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCC
Q 005656          154 VIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS  233 (685)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~  233 (685)
                                                     ..+...                       ..      -+=.|-+     
T Consensus       189 -------------------------------aKNvpn-----------------------D~------L~LrVPv-----  203 (412)
T KOG3881|consen  189 -------------------------------AKNVPN-----------------------DR------LGLRVPV-----  203 (412)
T ss_pred             -------------------------------ccCCCC-----------------------cc------ccceeee-----
Confidence                                           111000                       00      0001223     


Q ss_pred             CccccccccccccccCCCCcCEEEEEEcCC--CCEEEEEECCCeEEEEECCCC-ceEEEeecC-CceeEEEEeecCCEEE
Q 005656          234 GISRGSYLDMSERSNYAHNGEVVGVACDST--NTLMISAGYHGDIKVWDFKGR-DLKSRWEVG-CSLVKIVYHRVNGLLA  309 (685)
Q Consensus       234 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~-~~i~~~~~~~~~~~l~  309 (685)
                                          .++++.|-+.  ...|++++.-+.+++||.+.+ +++..+... .+++++...|++++++
T Consensus       204 --------------------W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy  263 (412)
T KOG3881|consen  204 --------------------WITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIY  263 (412)
T ss_pred             --------------------eeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEE
Confidence                                3455666665  778999999999999999854 567777664 8999999999999999


Q ss_pred             EEeCCCeEEEEEcCCCeeEEE-EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccceEEEEEcCC
Q 005656          310 TVADDLVIRLFDVVALRMVRK-FEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPN  387 (685)
Q Consensus       310 ~~~~dg~I~i~d~~~~~~~~~-~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spd  387 (685)
                      +|..-+.+..||+++++.... +.+..+.|+++..+|.+++|+++|-|..|||+|+.+.+++..+...+.++++.+.++
T Consensus       264 ~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~  342 (412)
T KOG3881|consen  264 TGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD  342 (412)
T ss_pred             EecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence            999999999999999998877 889999999999999999999999999999999999888887777777877777553

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.64  E-value=1.3e-14  Score=143.14  Aligned_cols=231  Identities=13%  Similarity=0.185  Sum_probs=155.9

Q ss_pred             eeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEe-----cCCCEEEEEeCCCceEEEEeec
Q 005656           49 IISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY-----ANGRHILSAGQDRAFRLFSVIQ  123 (685)
Q Consensus        49 V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~-----~~~~~l~s~s~dg~i~vwd~~~  123 (685)
                      +....++-.|.+|+-.-. ..+.+|++..+....+.+....-.....+|-.|.     |++--++.+-.-|.+.+.|...
T Consensus       126 ~~~~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~  204 (636)
T KOG2394|consen  126 VTNTNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPIN  204 (636)
T ss_pred             eeeccccCCCCEEEEecC-CeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchh
Confidence            444444555666655432 3688888875433323332222223334455552     3566788888888898888754


Q ss_pred             CceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCC
Q 005656          124 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT  203 (685)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  203 (685)
                      .+..+.+...                                                                ..-...
T Consensus       205 ~~~sklfne~----------------------------------------------------------------r~i~kt  220 (636)
T KOG2394|consen  205 FEVSKLFNEE----------------------------------------------------------------RLINKS  220 (636)
T ss_pred             hHHHHhhhhc----------------------------------------------------------------cccccc
Confidence            2221111100                                                                002346


Q ss_pred             CeEEEEEccC-CCEEEEEecCCcEEEEECCCCccc--cccc------------------cccccccCCCCcCEEEEEEcC
Q 005656          204 AVKACTISAC-GNFAVLGTAGGWIERFNLQSGISR--GSYL------------------DMSERSNYAHNGEVVGVACDS  262 (685)
Q Consensus       204 ~v~~~~~s~~-g~~l~~g~~dg~i~~~d~~~~~~~--~~~~------------------~~~~~~~~~h~~~v~~l~~~~  262 (685)
                      .++|+.|-|. ...+++...+|.+++||..-....  ..+.                  ..+.....--.+.|..++|+|
T Consensus       221 svT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~  300 (636)
T KOG2394|consen  221 SVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSP  300 (636)
T ss_pred             ceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcC
Confidence            7889998884 456777888899999976311000  0000                  000001111245789999999


Q ss_pred             CCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEE
Q 005656          263 TNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDF  341 (685)
Q Consensus       263 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l  341 (685)
                      ||++||+.+.||.++|+|+.+.+++..+..- +...|++|+|||++|++|+.|.-|.||.+..++.+..-.||.+.|+.+
T Consensus       301 DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~V  380 (636)
T KOG2394|consen  301 DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVV  380 (636)
T ss_pred             CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeE
Confidence            9999999999999999999998877665543 789999999999999999999999999999999999999999999999


Q ss_pred             EEc
Q 005656          342 CFS  344 (685)
Q Consensus       342 ~~s  344 (685)
                      +|.
T Consensus       381 aFD  383 (636)
T KOG2394|consen  381 AFD  383 (636)
T ss_pred             eec
Confidence            997

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.64  E-value=1.2e-14  Score=143.55  Aligned_cols=211  Identities=17%  Similarity=0.259  Sum_probs=153.8

Q ss_pred             EEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEE-----ccCCCEEEEEecCCcEEEEECCCCcccccccccccc
Q 005656          172 TCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTI-----SACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSER  246 (685)
Q Consensus       172 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~-----s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~  246 (685)
                      .|-.-...+++|+++........+..........+|-+|     .+.+--+++|-..|.|.++|.........+..    
T Consensus       138 lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~sklfne----  213 (636)
T KOG2394|consen  138 LCFNVGRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEVSKLFNE----  213 (636)
T ss_pred             EEEecCCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhhHHHHhhhh----
Confidence            344455677888877532222222111122233334444     46778899999999999999887444333321    


Q ss_pred             ccCCCCcCEEEEEEcCCCC-EEEEEECCCeEEEEECCCC--------------c--------------eEEEee-cCCce
Q 005656          247 SNYAHNGEVVGVACDSTNT-LMISAGYHGDIKVWDFKGR--------------D--------------LKSRWE-VGCSL  296 (685)
Q Consensus       247 ~~~~h~~~v~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~--------------~--------------~~~~~~-~~~~i  296 (685)
                      ...-.+..|+++.|-|.+. .++.+-.+|.+++||..-.              .              ++..+. ....|
T Consensus       214 ~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~i  293 (636)
T KOG2394|consen  214 ERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSI  293 (636)
T ss_pred             cccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccc
Confidence            1113447899999998654 5566668999999975311              0              111111 12578


Q ss_pred             eEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeec
Q 005656          297 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVD  376 (685)
Q Consensus       297 ~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~  376 (685)
                      ..++|+|||++||+.+.||.+||||..+.+++..++.--+...|++|||||+||++|++|--|.||.+..++.+..-+.|
T Consensus       294 n~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGH  373 (636)
T KOG2394|consen  294 NEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGH  373 (636)
T ss_pred             cceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccc
Confidence            89999999999999999999999999999888888877888999999999999999999999999999999999988877


Q ss_pred             cc-eEEEEEcC
Q 005656          377 VS-ITALSLSP  386 (685)
Q Consensus       377 ~~-v~~v~~sp  386 (685)
                      .. |..|+|.|
T Consensus       374 kSWVs~VaFDp  384 (636)
T KOG2394|consen  374 KSWVSVVAFDP  384 (636)
T ss_pred             ccceeeEeecc
Confidence            76 99999983

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=1e-13  Score=147.13  Aligned_cols=232  Identities=15%  Similarity=0.130  Sum_probs=157.6

Q ss_pred             cEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeC---CCceEEEEeecCceeeEechhhHHHHHhhcccc
Q 005656           69 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ---DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK  145 (685)
Q Consensus        69 ~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  145 (685)
                      .|.+||.+..     ..+.+..|...+.+.+|+|||+.|+..+.   +..|.+||+.+++... +.              
T Consensus       183 ~l~~~d~dg~-----~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~--------------  242 (435)
T PRK05137        183 RLAIMDQDGA-----NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VG--------------  242 (435)
T ss_pred             EEEEECCCCC-----CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-ee--------------
Confidence            5666665432     22334567889999999999999888764   4679999987664321 10              


Q ss_pred             ccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEE-ecCC
Q 005656          146 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAGG  224 (685)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~dg  224 (685)
                                                                            .....+...+|+|+|+.++.. +.+|
T Consensus       243 ------------------------------------------------------~~~g~~~~~~~SPDG~~la~~~~~~g  268 (435)
T PRK05137        243 ------------------------------------------------------NFPGMTFAPRFSPDGRKVVMSLSQGG  268 (435)
T ss_pred             ------------------------------------------------------cCCCcccCcEECCCCCEEEEEEecCC
Confidence                                                                  223455678999999987654 4444


Q ss_pred             --cEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC-CC--eEEEEECCCCceEEEeecCCceeEE
Q 005656          225 --WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-HG--DIKVWDFKGRDLKSRWEVGCSLVKI  299 (685)
Q Consensus       225 --~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~i~~~  299 (685)
                        .|++||+.++......         .+........|+|+|+.++..+. +|  .|++||+.++...........+...
T Consensus       269 ~~~Iy~~d~~~~~~~~Lt---------~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~  339 (435)
T PRK05137        269 NTDIYTMDLRSGTTTRLT---------DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTP  339 (435)
T ss_pred             CceEEEEECCCCceEEcc---------CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCe
Confidence              4888899887654321         44555677899999998887763 33  6888898877665544444556778


Q ss_pred             EEeecCCEEEEEeCC---CeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCC------CcEEEEEcCCCcee
Q 005656          300 VYHRVNGLLATVADD---LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD------GSLRIWDVILARQI  370 (685)
Q Consensus       300 ~~~~~~~~l~~~~~d---g~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~D------g~I~iwd~~~~~~i  370 (685)
                      .|+|+|+.|+....+   ..|.+||+.++. .+.+. ....+....|+|||++|+..+.+      ..++++|+..+.. 
T Consensus       340 ~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-  416 (435)
T PRK05137        340 VWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-  416 (435)
T ss_pred             EECCCCCEEEEEEcCCCceEEEEEECCCCc-eEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-
Confidence            899999988877643   368889986554 33343 23356788999999998865543      2578888766544 


Q ss_pred             eEEeeccceEEEEEcC
Q 005656          371 DAIHVDVSITALSLSP  386 (685)
Q Consensus       371 ~~~~~~~~v~~v~~sp  386 (685)
                      ..+.....+...+|+|
T Consensus       417 ~~l~~~~~~~~p~Wsp  432 (435)
T PRK05137        417 REVPTPGDASDPAWSP  432 (435)
T ss_pred             EEccCCCCccCcccCC
Confidence            4444444467777776

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=9.4e-14  Score=147.16  Aligned_cols=234  Identities=13%  Similarity=0.113  Sum_probs=158.0

Q ss_pred             CcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecC---CCcEEEEEecCCCCCCceeEecccCCCCCeEEEEe
Q 005656           25 GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA---DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY  101 (685)
Q Consensus        25 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~---D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~  101 (685)
                      ..|.+||....... .+. .|...+.+.+|+|||+.|+..+.   +..|.+|++..+.  .+.+.   .+.+...+..|+
T Consensus       184 ~~l~i~D~~g~~~~-~lt-~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~--~~~l~---~~~g~~~~~~~S  256 (433)
T PRK04922        184 YALQVADSDGYNPQ-TIL-RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ--RELVA---SFRGINGAPSFS  256 (433)
T ss_pred             EEEEEECCCCCCce-Eee-cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCC--EEEec---cCCCCccCceEC
Confidence            46999998655443 444 57778999999999998888764   3468888886552  12222   334445678999


Q ss_pred             cCCCEEE-EEeCCC--ceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCc
Q 005656          102 ANGRHIL-SAGQDR--AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTA  178 (685)
Q Consensus       102 ~~~~~l~-s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (685)
                      |||+.|+ +.+.+|  .|.+||+.+++... +.                                               
T Consensus       257 pDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt-----------------------------------------------  288 (433)
T PRK04922        257 PDGRRLALTLSRDGNPEIYVMDLGSRQLTR-LT-----------------------------------------------  288 (433)
T ss_pred             CCCCEEEEEEeCCCCceEEEEECCCCCeEE-Cc-----------------------------------------------
Confidence            9998776 445555  47778876554211 10                                               


Q ss_pred             eEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec-CC--cEEEEECCCCccccccccccccccCCCCcCE
Q 005656          179 QAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA-GG--WIERFNLQSGISRGSYLDMSERSNYAHNGEV  255 (685)
Q Consensus       179 ~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-dg--~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v  255 (685)
                                           .+.......+|+|+|+++++.+. +|  .|+++|+.++......         .+....
T Consensus       289 ---------------------~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt---------~~g~~~  338 (433)
T PRK04922        289 ---------------------NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT---------FQGNYN  338 (433)
T ss_pred             ---------------------cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee---------cCCCCc
Confidence                                 12223456799999999887764 44  4777787776543221         122334


Q ss_pred             EEEEEcCCCCEEEEEECCC---eEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCC---CeEEEEEcCCCeeEE
Q 005656          256 VGVACDSTNTLMISAGYHG---DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD---LVIRLFDVVALRMVR  329 (685)
Q Consensus       256 ~~l~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~I~i~d~~~~~~~~  329 (685)
                      ..++|+|+|++++..+.++   .|.+||+.+++.. .+..........|+|+|++++..+.+   +.++++++. +...+
T Consensus       339 ~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~  416 (433)
T PRK04922        339 ARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQ  416 (433)
T ss_pred             cCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceE
Confidence            5689999999988765443   6999999887765 33333345567999999987776653   468888885 44566


Q ss_pred             EEecCCCCeEEEEEcC
Q 005656          330 KFEGHTDRITDFCFSE  345 (685)
Q Consensus       330 ~~~~h~~~I~~l~~sp  345 (685)
                      .+..+.+.+...+|+|
T Consensus       417 ~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        417 RLVSADGEVREPAWSP  432 (433)
T ss_pred             EcccCCCCCCCCccCC
Confidence            6666677788888887

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.63  E-value=1.9e-13  Score=126.94  Aligned_cols=172  Identities=15%  Similarity=0.172  Sum_probs=131.2

Q ss_pred             CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECC-CCceEEEeecCC-ceeEEEE
Q 005656          224 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK-GRDLKSRWEVGC-SLVKIVY  301 (685)
Q Consensus       224 g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~-~i~~~~~  301 (685)
                      ..|.+||-.....+..+         ....+|.++.+.++  .+++. ..+.|++|.+. +.+.++.+.... |-.-+++
T Consensus        75 NkviIWDD~k~~~i~el---------~f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~  142 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIEL---------SFNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSL  142 (346)
T ss_pred             ceEEEEecccCcEEEEE---------EeccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEee
Confidence            46899995555555444         56789999999876  34444 36899999998 556666555432 2223334


Q ss_pred             eec--CCEEEEE-eCCCeEEEEEcCCCee--EEEEecCCCCeEEEEEcCCCCEEEEEeCCCc-EEEEEcCCCceeeEEee
Q 005656          302 HRV--NGLLATV-ADDLVIRLFDVVALRM--VRKFEGHTDRITDFCFSEDGKWLLSSGMDGS-LRIWDVILARQIDAIHV  375 (685)
Q Consensus       302 ~~~--~~~l~~~-~~dg~I~i~d~~~~~~--~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~-I~iwd~~~~~~i~~~~~  375 (685)
                      .|.  ..+||.- -.-|.|.|.|+...+.  ...+.+|.+.|.+++.+-+|..+||+|..|+ |||||..+|+++..++.
T Consensus       143 ~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR  222 (346)
T KOG2111|consen  143 CPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR  222 (346)
T ss_pred             cCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec
Confidence            443  3355543 3468999999987655  4678899999999999999999999999998 89999999999999974


Q ss_pred             c---cceEEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656          376 D---VSITALSLSPNMDVLATAHVDQNGVYLWVNRC  408 (685)
Q Consensus       376 ~---~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~  408 (685)
                      .   ..|.+++|||+..+||+++..| +|+||..+.
T Consensus       223 G~d~A~iy~iaFSp~~s~LavsSdKg-TlHiF~l~~  257 (346)
T KOG2111|consen  223 GVDRADIYCIAFSPNSSWLAVSSDKG-TLHIFSLRD  257 (346)
T ss_pred             CCchheEEEEEeCCCccEEEEEcCCC-eEEEEEeec
Confidence            3   3499999999999999999665 999998654

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.63  E-value=3.5e-13  Score=132.68  Aligned_cols=316  Identities=15%  Similarity=0.227  Sum_probs=213.2

Q ss_pred             cEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCC---------------C
Q 005656            4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD---------------N   68 (685)
Q Consensus         4 ~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D---------------~   68 (685)
                      ++..++|||.|. +|++....| |.+|+-..+..+..+.  | ..|..+.|+|++++|.|-+..               +
T Consensus        34 p~~~~~~SP~G~-~l~~~~~~~-V~~~~g~~~~~l~~~~--~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n  108 (561)
T COG5354          34 PVAYVSESPLGT-YLFSEHAAG-VECWGGPSKAKLVRFR--H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKN  108 (561)
T ss_pred             chhheeecCcch-heehhhccc-eEEccccchhheeeee--c-CCceecccCcccceeeeeccCCccChhhccCCccccC
Confidence            578899999999 888776655 9999988877555654  4 468999999999999996543               3


Q ss_pred             cEEEEEecCCCCCCceeEecccCCCC--Ce-EEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccc
Q 005656           69 SIKMWIFDTTDGDPRLLRFRSGHSAP--PL-CIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK  145 (685)
Q Consensus        69 ~v~iWd~~~~~~~~~~~~~~~~h~~~--v~-~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  145 (685)
                      .+.+||..++    .++..+.+-..+  .+ -+.|+-+.++++-.. ...+.++++ ++... ...              
T Consensus       109 ~~~vwd~~sg----~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~-t~n~~-~~p--------------  167 (561)
T COG5354         109 NVFVWDIASG----MIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEI-TDNIE-EHP--------------  167 (561)
T ss_pred             ceeEEeccCc----eeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEec-CCccc-cCc--------------
Confidence            5899999887    777777766666  55 678888877766542 345888876 22211 000              


Q ss_pred             ccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCE--EEE----
Q 005656          146 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNF--AVL----  219 (685)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~--l~~----  219 (685)
                              .                                         ..  -....+....++|.|+.  ++.    
T Consensus       168 --------~-----------------------------------------~~--lr~~gi~dFsisP~~n~~~la~~tPE  196 (561)
T COG5354         168 --------F-----------------------------------------KN--LRPVGILDFSISPEGNHDELAYWTPE  196 (561)
T ss_pred             --------h-----------------------------------------hh--ccccceeeEEecCCCCCceEEEEccc
Confidence                    0                                         00  11244556666665432  222    


Q ss_pred             -EecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE-----------CCCeEEEEECCCCceE
Q 005656          220 -GTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-----------YHGDIKVWDFKGRDLK  287 (685)
Q Consensus       220 -g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-----------~dg~i~iwd~~~~~~~  287 (685)
                       +...+.+++|.+..+....+..        -....-..+.|.+.|+++..--           ....++++++....+.
T Consensus       197 k~~kpa~~~i~sIp~~s~l~tk~--------lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~  268 (561)
T COG5354         197 KLNKPAMVRILSIPKNSVLVTKN--------LFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIP  268 (561)
T ss_pred             cCCCCcEEEEEEccCCCeeeeee--------eEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccc
Confidence             3456778888887655443321        1112234577888887654321           1356888888865555


Q ss_pred             EEeecCCceeEEEEeecCCEEEEEe--CCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCC---CcEEEE
Q 005656          288 SRWEVGCSLVKIVYHRVNGLLATVA--DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD---GSLRIW  362 (685)
Q Consensus       288 ~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~D---g~I~iw  362 (685)
                      ......++|...+|.|.++.+++.+  .+-.+.++|++.. ..  +......=+.+.|||.++|++.++-|   |.|-+|
T Consensus       269 V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~--~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~  345 (561)
T COG5354         269 VEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LR--FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIF  345 (561)
T ss_pred             eeccccccceeeeecccCCceeEEecccccceeecccccc-eE--EecCCcccccccccCcccEEEEecCCccccceEEe
Confidence            4445578999999999999666654  6778999999866 32  33445566778999999999998755   679999


Q ss_pred             EcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeC-----CCeEEEEEcC
Q 005656          363 DVILARQIDAIHVDVSITALSLSPNMDVLATAHVD-----QNGVYLWVNR  407 (685)
Q Consensus       363 d~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d-----~~~I~lW~~~  407 (685)
                      |....-.+..-......+-+.|+|||.++.++...     ++.|.||+.-
T Consensus       346 ~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~  395 (561)
T COG5354         346 DPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY  395 (561)
T ss_pred             ccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence            97755444322233346677899999998887532     3589999853

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=2.1e-13  Score=144.01  Aligned_cols=236  Identities=11%  Similarity=0.086  Sum_probs=155.1

Q ss_pred             CcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCC---CcEEEEEecCCCCCCceeEecccCCCCCeEEEEe
Q 005656           25 GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD---NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY  101 (685)
Q Consensus        25 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D---~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~  101 (685)
                      ..|.+||.... ....+. .+...+.+.+|+|||+.|+..+.+   ..|.+||+.++.  ...+.   ...+.+.+..|+
T Consensus       176 ~~L~~~D~dG~-~~~~l~-~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~--~~~l~---~~~g~~~~~~~S  248 (427)
T PRK02889        176 YQLQISDADGQ-NAQSAL-SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR--RRVVA---NFKGSNSAPAWS  248 (427)
T ss_pred             cEEEEECCCCC-CceEec-cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC--EEEee---cCCCCccceEEC
Confidence            46777787543 333444 577889999999999988877643   358888887652  12222   233456688999


Q ss_pred             cCCCEEE-EEeCCCceEEEEeecCc-eeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCce
Q 005656          102 ANGRHIL-SAGQDRAFRLFSVIQDQ-QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQ  179 (685)
Q Consensus       102 ~~~~~l~-s~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (685)
                      |||+.|+ +.+.+|...+|.+.... ....+.                                                
T Consensus       249 PDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt------------------------------------------------  280 (427)
T PRK02889        249 PDGRTLAVALSRDGNSQIYTVNADGSGLRRLT------------------------------------------------  280 (427)
T ss_pred             CCCCEEEEEEccCCCceEEEEECCCCCcEECC------------------------------------------------
Confidence            9998886 56778887777654211 111110                                                


Q ss_pred             EEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec-CCcEEEE--ECCCCccccccccccccccCCCCcCEE
Q 005656          180 AYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA-GGWIERF--NLQSGISRGSYLDMSERSNYAHNGEVV  256 (685)
Q Consensus       180 ~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-dg~i~~~--d~~~~~~~~~~~~~~~~~~~~h~~~v~  256 (685)
                                          .+........|+|+|+.++..+. +|...+|  ++.++......         .+.....
T Consensus       281 --------------------~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt---------~~g~~~~  331 (427)
T PRK02889        281 --------------------QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT---------FTGSYNT  331 (427)
T ss_pred             --------------------CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe---------cCCCCcC
Confidence                                12233456789999998887654 4555555  44454432211         1122334


Q ss_pred             EEEEcCCCCEEEEEECCC---eEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCC---eEEEEEcCCCeeEEE
Q 005656          257 GVACDSTNTLMISAGYHG---DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDL---VIRLFDVVALRMVRK  330 (685)
Q Consensus       257 ~l~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~I~i~d~~~~~~~~~  330 (685)
                      ..+|+|+|++++..+.++   .|.+||+.+++..... .........|+|+|+.|+.++.++   .+++.++ +++..+.
T Consensus       332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt-~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~  409 (427)
T PRK02889        332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT-DTTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQR  409 (427)
T ss_pred             ceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc-CCCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEE
Confidence            678999999998777554   6999999988755433 333456789999999888877544   4666676 4666667


Q ss_pred             EecCCCCeEEEEEcCC
Q 005656          331 FEGHTDRITDFCFSED  346 (685)
Q Consensus       331 ~~~h~~~I~~l~~spd  346 (685)
                      +..+.+.+...+|+|-
T Consensus       410 l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        410 LSVQGGDVREPSWGPF  425 (427)
T ss_pred             eecCCCCCCCCccCCC
Confidence            7777788888899873

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.61  E-value=7.1e-12  Score=119.36  Aligned_cols=271  Identities=14%  Similarity=0.245  Sum_probs=188.8

Q ss_pred             CCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCC---CceEEEEeecC-ceeeEechhhHHHHHhhc
Q 005656           67 DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD---RAFRLFSVIQD-QQSRELSQRHVAKRARKL  142 (685)
Q Consensus        67 D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d---g~i~vwd~~~~-~~~~~~~~~~~~~~~~~~  142 (685)
                      +.-|.+|++++..+....+.. ..+.+.++-++|+|++++|.++..+   |.|-.|.+... .....+..          
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~-v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~----------   83 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQL-VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNR----------   83 (346)
T ss_pred             CCceEEEEEeCcccccchhhh-ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeec----------
Confidence            567999999977665444433 3567788999999999999988654   66777766542 11111110          


Q ss_pred             cccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe-
Q 005656          143 KMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-  221 (685)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-  221 (685)
                                                                             ......+.+.++++++|++++++. 
T Consensus        84 -------------------------------------------------------~~~~g~~p~yvsvd~~g~~vf~AnY  108 (346)
T COG2706          84 -------------------------------------------------------QTLPGSPPCYVSVDEDGRFVFVANY  108 (346)
T ss_pred             -------------------------------------------------------cccCCCCCeEEEECCCCCEEEEEEc
Confidence                                                                   002233348899999999988774 


Q ss_pred             cCCcEEEEECCC-CccccccccccccccCCCCcC----------EEEEEEcCCCCEEEEEEC-CCeEEEEECCCCceEE-
Q 005656          222 AGGWIERFNLQS-GISRGSYLDMSERSNYAHNGE----------VVGVACDSTNTLMISAGY-HGDIKVWDFKGRDLKS-  288 (685)
Q Consensus       222 ~dg~i~~~d~~~-~~~~~~~~~~~~~~~~~h~~~----------v~~l~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~-  288 (685)
                      ..|.|.++-++. |.......      ...|.+.          +....++|++++++++.. -..|.+|++..+++.. 
T Consensus       109 ~~g~v~v~p~~~dG~l~~~v~------~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~  182 (346)
T COG2706         109 HSGSVSVYPLQADGSLQPVVQ------VVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPA  182 (346)
T ss_pred             cCceEEEEEcccCCcccccee------eeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccc
Confidence            568999999976 33322211      1133333          788899999999998873 3479999999776543 


Q ss_pred             ---EeecCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCC-eeEEEEec---------CCCCeEEEEEcCCCCEEEEEe
Q 005656          289 ---RWEVGCSLVKIVYHRVNGLLATVAD-DLVIRLFDVVAL-RMVRKFEG---------HTDRITDFCFSEDGKWLLSSG  354 (685)
Q Consensus       289 ---~~~~~~~i~~~~~~~~~~~l~~~~~-dg~I~i~d~~~~-~~~~~~~~---------h~~~I~~l~~spdg~~l~s~s  354 (685)
                         .+..++....+.|+|++++.++.++ +++|.+|..... ..+..++.         -.....+|..+|||++|.++.
T Consensus       183 ~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasN  262 (346)
T COG2706         183 DPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASN  262 (346)
T ss_pred             cccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEec
Confidence               2344578899999999998777665 889999998873 22333321         234577899999999999875


Q ss_pred             -CCCcEEEEEcCCC-ceeeEE---eeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEEcCCC
Q 005656          355 -MDGSLRIWDVILA-RQIDAI---HVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNRCM  409 (685)
Q Consensus       355 -~Dg~I~iwd~~~~-~~i~~~---~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~~~~~  409 (685)
                       ....|-+|.+... ..+..+   ..+.. .+.+.|+|+|++|++++.++..|.+|.....
T Consensus       263 Rg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~  323 (346)
T COG2706         263 RGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKE  323 (346)
T ss_pred             CCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence             2346888887642 223322   23334 8999999999999999999989999975443

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.60  E-value=5.3e-13  Score=132.39  Aligned_cols=314  Identities=13%  Similarity=0.173  Sum_probs=208.2

Q ss_pred             EEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecC-----------CCcEEEEE
Q 005656            6 TALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-----------DNSIKMWI   74 (685)
Q Consensus         6 ~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~-----------D~~v~iWd   74 (685)
                      |-+.|||-|. +|+|-..-| |.+|--++-..++.+.  |. .|.-+.|||+.++|+|-+.           ...++|||
T Consensus       214 tyv~wSP~GT-YL~t~Hk~G-I~lWGG~~f~r~~RF~--Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD  288 (698)
T KOG2314|consen  214 TYVRWSPKGT-YLVTFHKQG-IALWGGESFDRIQRFY--HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD  288 (698)
T ss_pred             eeEEecCCce-EEEEEeccc-eeeecCccHHHHHhcc--CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence            5689999999 999987766 8999877766666664  65 5899999999999999653           25799999


Q ss_pred             ecCCCCCCceeEeccc--CCCCC-eEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccccccccc
Q 005656           75 FDTTDGDPRLLRFRSG--HSAPP-LCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL  151 (685)
Q Consensus        75 ~~~~~~~~~~~~~~~~--h~~~v-~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (685)
                      +.++    .+.+.+..  ....+ .-..||.|+++++-... .+|.||+...-....                       
T Consensus       289 I~tG----~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld-----------------------  340 (698)
T KOG2314|consen  289 IATG----LLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLD-----------------------  340 (698)
T ss_pred             cccc----chhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeec-----------------------
Confidence            9988    44444333  12222 34689999999987776 458888764321110                       


Q ss_pred             CceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecC-----CcE
Q 005656          152 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG-----GWI  226 (685)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d-----g~i  226 (685)
                                                                   ...-....|....|+|.++.|+.-+..     ..+
T Consensus       341 ---------------------------------------------~Kslki~gIr~FswsP~~~llAYwtpe~~~~parv  375 (698)
T KOG2314|consen  341 ---------------------------------------------KKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARV  375 (698)
T ss_pred             ---------------------------------------------ccccCCccccCcccCCCcceEEEEcccccCCcceE
Confidence                                                         000224557777788877776653321     245


Q ss_pred             EEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE----------CCCeEEEEECCCC-ceEEEeecCCc
Q 005656          227 ERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG----------YHGDIKVWDFKGR-DLKSRWEVGCS  295 (685)
Q Consensus       227 ~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s----------~dg~i~iwd~~~~-~~~~~~~~~~~  295 (685)
                      .+..+.+++.+++..        -|+-.=..+.|-.+|.+|+.--          .-..+.|+.++.. -++........
T Consensus       376 tL~evPs~~~iRt~n--------lfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~  447 (698)
T KOG2314|consen  376 TLMEVPSKREIRTKN--------LFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKES  447 (698)
T ss_pred             EEEecCccceeeecc--------ceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchh
Confidence            555666555544322        2333333456666777665421          1123556666543 34556667788


Q ss_pred             eeEEEEeecCCEEEEEeC---CCeEEEEEcCC----CeeEEEEecCCCCeEEEEEcCCCCEEEEEe---CCCcEEEEEcC
Q 005656          296 LVKIVYHRVNGLLATVAD---DLVIRLFDVVA----LRMVRKFEGHTDRITDFCFSEDGKWLLSSG---MDGSLRIWDVI  365 (685)
Q Consensus       296 i~~~~~~~~~~~l~~~~~---dg~I~i~d~~~----~~~~~~~~~h~~~I~~l~~spdg~~l~s~s---~Dg~I~iwd~~  365 (685)
                      +...+|-|.|+.+++-+.   ..++.+|.+++    .+.+..+..  ...+.+.|+|.|++++.+.   ..|.+.++|..
T Consensus       448 vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~  525 (698)
T KOG2314|consen  448 VIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTD  525 (698)
T ss_pred             eeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecc
Confidence            999999999997776554   35788888773    234444442  4467899999999998764   57889999987


Q ss_pred             CCceeeEE-eeccceEEEEEcCCCCeEEEEEeCC-----CeEEEEEcC
Q 005656          366 LARQIDAI-HVDVSITALSLSPNMDVLATAHVDQ-----NGVYLWVNR  407 (685)
Q Consensus       366 ~~~~i~~~-~~~~~v~~v~~spdg~~Lat~~~d~-----~~I~lW~~~  407 (685)
                      -..+...- ..|...+.+.|.|.|+|++|++.-.     ++.++|+.+
T Consensus       526 ~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq  573 (698)
T KOG2314|consen  526 YADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ  573 (698)
T ss_pred             hhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence            54443332 2355588999999999999987542     366777643

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=3.7e-13  Score=142.84  Aligned_cols=233  Identities=12%  Similarity=0.132  Sum_probs=157.7

Q ss_pred             CcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecC---CCcEEEEEecCCCCCCceeEecccCCCCCeEEEEe
Q 005656           25 GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA---DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY  101 (685)
Q Consensus        25 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~---D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~  101 (685)
                      ..|.+||...... ..+. .|...+.+.+|+|||+.|+..+.   +..|.+|++.++.    . ..+..+.+.+...+|+
T Consensus       182 ~~l~~~d~dg~~~-~~lt-~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~----~-~~l~~~~g~~~~~~~S  254 (435)
T PRK05137        182 KRLAIMDQDGANV-RYLT-DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ----R-ELVGNFPGMTFAPRFS  254 (435)
T ss_pred             eEEEEECCCCCCc-EEEe-cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc----E-EEeecCCCcccCcEEC
Confidence            3789999865544 3444 68889999999999998887653   4679999887652    1 2233456677889999


Q ss_pred             cCCCEEE-EEeCCCc--eEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCc
Q 005656          102 ANGRHIL-SAGQDRA--FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTA  178 (685)
Q Consensus       102 ~~~~~l~-s~s~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (685)
                      |||+.|+ +.+.++.  |.+||+.++... .+.                                               
T Consensus       255 PDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt-----------------------------------------------  286 (435)
T PRK05137        255 PDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLT-----------------------------------------------  286 (435)
T ss_pred             CCCCEEEEEEecCCCceEEEEECCCCceE-Ecc-----------------------------------------------
Confidence            9998875 5555665  555566544321 111                                               


Q ss_pred             eEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec-CC--cEEEEECCCCccccccccccccccCCCCcCE
Q 005656          179 QAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA-GG--WIERFNLQSGISRGSYLDMSERSNYAHNGEV  255 (685)
Q Consensus       179 ~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-dg--~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v  255 (685)
                                           .+.......+|+|+|+.++..+. +|  .|+++|+.++......         .+.+.+
T Consensus       287 ---------------------~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt---------~~~~~~  336 (435)
T PRK05137        287 ---------------------DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRIS---------FGGGRY  336 (435)
T ss_pred             ---------------------CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEee---------cCCCcc
Confidence                                 22333456799999999888764 33  6888898766543322         234456


Q ss_pred             EEEEEcCCCCEEEEEECC---CeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCC------CeEEEEEcCCCe
Q 005656          256 VGVACDSTNTLMISAGYH---GDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD------LVIRLFDVVALR  326 (685)
Q Consensus       256 ~~l~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~I~i~d~~~~~  326 (685)
                      ....|+|+|+.|+..+.+   ..|.+||+.++.. ..+.....+....|+|||+.|+..+.+      ..++++|+..+.
T Consensus       337 ~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~  415 (435)
T PRK05137        337 STPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN  415 (435)
T ss_pred             cCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence            678899999999877643   3688889865543 334334456788999999988776543      368888887665


Q ss_pred             eEEEEecCCCCeEEEEEcC
Q 005656          327 MVRKFEGHTDRITDFCFSE  345 (685)
Q Consensus       327 ~~~~~~~h~~~I~~l~~sp  345 (685)
                      . +.+. ..+.+...+|+|
T Consensus       416 ~-~~l~-~~~~~~~p~Wsp  432 (435)
T PRK05137        416 E-REVP-TPGDASDPAWSP  432 (435)
T ss_pred             e-EEcc-CCCCccCcccCC
Confidence            4 4444 344567778877

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=7.8e-15  Score=144.82  Aligned_cols=225  Identities=21%  Similarity=0.272  Sum_probs=155.4

Q ss_pred             eEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecC--CCEEEEEeCCCc
Q 005656           38 QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--GRHILSAGQDRA  115 (685)
Q Consensus        38 ~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~--~~~l~s~s~dg~  115 (685)
                      ...+. ||.+.|+|++|+.+|.+|++||.|-.+.|||.-...   .+.....||.+.|.++.|.|.  .+.+++|..|..
T Consensus        43 E~eL~-GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~K---llhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~  118 (758)
T KOG1310|consen   43 EAELT-GHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYK---LLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKL  118 (758)
T ss_pred             hhhhc-cccceecceeecCCCCEEeecCCcceEEeecchhcc---eeeeeecccccceeEEeeeccCCCeEEEeccCcce
Confidence            34555 999999999999999999999999999999876441   333445799999999999994  678999999999


Q ss_pred             eEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceee
Q 005656          116 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL  195 (685)
Q Consensus       116 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  195 (685)
                      |+++|+...+....                                                                  
T Consensus       119 i~lfdl~~~~~~~~------------------------------------------------------------------  132 (758)
T KOG1310|consen  119 IKLFDLDSSKEGGM------------------------------------------------------------------  132 (758)
T ss_pred             EEEEeccccccccc------------------------------------------------------------------
Confidence            99999864321100                                                                  


Q ss_pred             cCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCC-CEEEEEECCC
Q 005656          196 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHG  274 (685)
Q Consensus       196 ~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg  274 (685)
                          .+....+                   ++.|                   ..|...|..++..|++ ..+.+++.||
T Consensus       133 ----d~~~~~~-------------------~~~~-------------------~cht~rVKria~~p~~PhtfwsasEDG  170 (758)
T KOG1310|consen  133 ----DHGMEET-------------------TRCW-------------------SCHTDRVKRIATAPNGPHTFWSASEDG  170 (758)
T ss_pred             ----ccCccch-------------------hhhh-------------------hhhhhhhhheecCCCCCceEEEecCCc
Confidence                0000000                   0111                   1677777788887877 6788888888


Q ss_pred             eEEEEECCCCceE-EEe-------e---cCCceeEEEEeecCC-EEEEEeCCCeEEEEEcCC--------C---------
Q 005656          275 DIKVWDFKGRDLK-SRW-------E---VGCSLVKIVYHRVNG-LLATVADDLVIRLFDVVA--------L---------  325 (685)
Q Consensus       275 ~i~iwd~~~~~~~-~~~-------~---~~~~i~~~~~~~~~~-~l~~~~~dg~I~i~d~~~--------~---------  325 (685)
                      +|+-+|++....- ...       .   .--...++.++|... +||+|+.|-..++||.+.        +         
T Consensus       171 tirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~  250 (758)
T KOG1310|consen  171 TIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKD  250 (758)
T ss_pred             ceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcc
Confidence            8888888752110 000       0   013467888898765 899999999999999431        1         


Q ss_pred             -eeEEEEe-cCC--------C---CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEe
Q 005656          326 -RMVRKFE-GHT--------D---RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH  374 (685)
Q Consensus       326 -~~~~~~~-~h~--------~---~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~  374 (685)
                       .+++.|. +|.        .   .++-++|+|+|.-|+..-..-.|+++|+..++....+.
T Consensus       251 ~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~  312 (758)
T KOG1310|consen  251 CRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYF  312 (758)
T ss_pred             cchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence             1233332 232        1   15677899999765544444569999999887665543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.58  E-value=9.1e-11  Score=114.64  Aligned_cols=213  Identities=13%  Similarity=0.133  Sum_probs=157.7

Q ss_pred             EEcCCceEEEEEcCccccCceeec-CCCCCCC------CeEEEE-Ecc-CCCEEEEEecCCcEEEEECCCCccccccccc
Q 005656          173 CHMDTAQAYVWRLQNFVLGEHILR-PCPENPT------AVKACT-ISA-CGNFAVLGTAGGWIERFNLQSGISRGSYLDM  243 (685)
Q Consensus       173 ~~~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~------~v~~~~-~s~-~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~  243 (685)
                      .-...+.+++++..+..+.+.-+. +......      +..-+. |++ +|++++..+ .|...+.+...+-.+..    
T Consensus       282 vFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~iqv----  356 (668)
T COG4946         282 VFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSIQV----  356 (668)
T ss_pred             EEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeEEc----
Confidence            334556788888776655443322 1110111      111111 333 566666655 46677776665544432    


Q ss_pred             cccccCCCCcCEEEEEEcCCCCEEEEEECCC-eEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEc
Q 005656          244 SERSNYAHNGEVVGVACDSTNTLMISAGYHG-DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDV  322 (685)
Q Consensus       244 ~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~  322 (685)
                            +|.+.|.-..+..+++-++.|..|| .+-++|..+++.......-+.|.++..+++|+.++++.....+.++|+
T Consensus       357 ------~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vidi  430 (668)
T COG4946         357 ------GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDI  430 (668)
T ss_pred             ------CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEe
Confidence                  7888899888888888899999999 899999999988777777799999999999999999999999999999


Q ss_pred             CCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCC----cEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEe
Q 005656          323 VALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG----SLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHV  396 (685)
Q Consensus       323 ~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg----~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~  396 (685)
                      +++.....-+...+-|+.++|||+++|+|-+--+|    .|+++|+..++........+.=.+-+|.|||++|..-+.
T Consensus       431 dngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~  508 (668)
T COG4946         431 DNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSA  508 (668)
T ss_pred             cCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEec
Confidence            99986555556677899999999999999886655    699999999888776655555667789999998887664

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.57  E-value=3.3e-13  Score=125.08  Aligned_cols=147  Identities=20%  Similarity=0.353  Sum_probs=109.6

Q ss_pred             EEEEEcCCCCEEEEEEC----------CCeEEEEECCC-CceEEEee--cCCceeEEEEeecCCEEEEE--eCCCeEEEE
Q 005656          256 VGVACDSTNTLMISAGY----------HGDIKVWDFKG-RDLKSRWE--VGCSLVKIVYHRVNGLLATV--ADDLVIRLF  320 (685)
Q Consensus       256 ~~l~~~~~~~~l~s~s~----------dg~i~iwd~~~-~~~~~~~~--~~~~i~~~~~~~~~~~l~~~--~~dg~I~i~  320 (685)
                      ..+.|+++|.+|+.-..          -|...+|.++. ......+.  ..++|.+++|+|+|+.+|+.  ..+..|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            46788888877654332          12345555532 23334443  34679999999999977655  356799999


Q ss_pred             EcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeC
Q 005656          321 DVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM---DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVD  397 (685)
Q Consensus       321 d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~---Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d  397 (685)
                      |++ ++.+..+.  ...++.+.|||+|++|++|+.   .|.|.+||+.+.+.+....+. .++.++|||||++++++...
T Consensus        89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~  164 (194)
T PF08662_consen   89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYLATATTS  164 (194)
T ss_pred             cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEEEEEEec
Confidence            997 66666664  567889999999999999874   467999999988888776644 47899999999999999864


Q ss_pred             -----CCeEEEEEc
Q 005656          398 -----QNGVYLWVN  406 (685)
Q Consensus       398 -----~~~I~lW~~  406 (685)
                           +++++||+.
T Consensus       165 ~r~~~dng~~Iw~~  178 (194)
T PF08662_consen  165 PRLRVDNGFKIWSF  178 (194)
T ss_pred             cceeccccEEEEEe
Confidence                 468999984

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.56  E-value=6.2e-13  Score=123.25  Aligned_cols=158  Identities=18%  Similarity=0.261  Sum_probs=115.3

Q ss_pred             eEEEEEccCCCEEEEEec----------CCcEEEEECCCCc-cccccccccccccCCCCcCEEEEEEcCCCCEEEEE--E
Q 005656          205 VKACTISACGNFAVLGTA----------GGWIERFNLQSGI-SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA--G  271 (685)
Q Consensus       205 v~~~~~s~~g~~l~~g~~----------dg~i~~~d~~~~~-~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~--s  271 (685)
                      -..+.|+++|++|++-..          -|...+|.++... ....+       .....++|.+++|+|+|+.++++  .
T Consensus         8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i-------~l~~~~~I~~~~WsP~g~~favi~g~   80 (194)
T PF08662_consen    8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESI-------ELKKEGPIHDVAWSPNGNEFAVIYGS   80 (194)
T ss_pred             eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCcccee-------eccCCCceEEEEECcCCCEEEEEEcc
Confidence            356789999998876544          1334455443221 22221       11345679999999999887554  3


Q ss_pred             CCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeC---CCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCC
Q 005656          272 YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVAD---DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK  348 (685)
Q Consensus       272 ~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~  348 (685)
                      .++.|.+||++ ++.+..+. ...+..+.|+|+|+++++++.   .|.|.+||+++.+.+..+. |. .++.++|||||+
T Consensus        81 ~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr  156 (194)
T PF08662_consen   81 MPAKVTLYDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGR  156 (194)
T ss_pred             CCcccEEEcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCC
Confidence            67799999997 55555554 467789999999999999874   4679999999999888775 33 478999999999


Q ss_pred             EEEEEeC------CCcEEEEEcCCCceeeEEe
Q 005656          349 WLLSSGM------DGSLRIWDVILARQIDAIH  374 (685)
Q Consensus       349 ~l~s~s~------Dg~I~iwd~~~~~~i~~~~  374 (685)
                      +|++++.      |+.++||+.. |+++....
T Consensus       157 ~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~  187 (194)
T PF08662_consen  157 YLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP  187 (194)
T ss_pred             EEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence            9998864      7889999984 66665543

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.56  E-value=2.6e-13  Score=129.33  Aligned_cols=212  Identities=17%  Similarity=0.290  Sum_probs=158.1

Q ss_pred             EEEEEeCCCcEEEEeCCCCe----eeEEeecccccCeeEEEEeCCCc-EEEEecCC--CcEEEEEecCCCCCCceeEec-
Q 005656           17 LLASGASSGVISIWNLEKRR----LQSVIREAHDNAIISLHFFANEP-VLMSASAD--NSIKMWIFDTTDGDPRLLRFR-   88 (685)
Q Consensus        17 ~latg~~dg~I~vwd~~~~~----~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~D--~~v~iWd~~~~~~~~~~~~~~-   88 (685)
                      .|++|-.+|.+.+|..+.+-    ....+.  -..++..+.-++..+ ++++||..  +.+++||+......+.-.... 
T Consensus       117 ~Litc~~sG~l~~~~~k~~d~hss~l~~la--~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpn  194 (412)
T KOG3881|consen  117 TLITCVSSGNLQVRHDKSGDLHSSKLIKLA--TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPN  194 (412)
T ss_pred             EEEEEecCCcEEEEeccCCccccccceeee--cCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCC
Confidence            57788889999999988443    222332  235677777777666 55558888  889999987652111100000 


Q ss_pred             --ccC--CCCCeEEEEecC--CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccc
Q 005656           89 --SGH--SAPPLCIRFYAN--GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI  162 (685)
Q Consensus        89 --~~h--~~~v~~i~~~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (685)
                        -+-  .-.++++.|.+.  ...|++++.-+.+|+||+..++....                          .|     
T Consensus       195 D~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~--------------------------~f-----  243 (412)
T KOG3881|consen  195 DRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVA--------------------------QF-----  243 (412)
T ss_pred             ccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCccee--------------------------Ee-----
Confidence              001  124578889887  78999999999999999976543211                          11     


Q ss_pred             cccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccc
Q 005656          163 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD  242 (685)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~  242 (685)
                                                          .....+++++...|.|+++++|...|.+..||++.+........
T Consensus       244 ------------------------------------d~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~k  287 (412)
T KOG3881|consen  244 ------------------------------------DFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLK  287 (412)
T ss_pred             ------------------------------------ccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccC
Confidence                                                13467899999999999999999999999999999998877432


Q ss_pred             ccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeec
Q 005656          243 MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRV  304 (685)
Q Consensus       243 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~  304 (685)
                             +-.+.|+++..+|.+.++++||.|..|+|+|+++.+++...-....++++.+.++
T Consensus       288 -------g~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~  342 (412)
T KOG3881|consen  288 -------GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD  342 (412)
T ss_pred             -------CccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence                   8889999999999999999999999999999999888777666667777666543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.55  E-value=6.3e-11  Score=113.00  Aligned_cols=302  Identities=14%  Similarity=0.191  Sum_probs=199.7

Q ss_pred             CCcEEEEeCCC--CeeeEEeecccccCeeEEEEeCCCcEEEEecC---CCcEEEEEecCCCCCCceeEecccCCCCCeEE
Q 005656           24 SGVISIWNLEK--RRLQSVIREAHDNAIISLHFFANEPVLMSASA---DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI   98 (685)
Q Consensus        24 dg~I~vwd~~~--~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~---D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i   98 (685)
                      +.-|.+|++.+  ++.-......+.+.++-|+|+|+++.|.++..   +|.|-.|.++..++....+........+.+.+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            46699999874  33322222367888999999999999988755   57899999987666555555444455666999


Q ss_pred             EEecCCCEEEEEeC-CCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCC
Q 005656           99 RFYANGRHILSAGQ-DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDT  177 (685)
Q Consensus        99 ~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (685)
                      +++++|++++++.. .|.|.++-+..........+                                      ...+.+.
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~--------------------------------------~~~h~g~  136 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQ--------------------------------------VVKHTGS  136 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCCcccccee--------------------------------------eeecCCC
Confidence            99999999999876 47888888765432221100                                      0000000


Q ss_pred             ceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecC-CcEEEEECCCCccccccccccccccCCCCcCEE
Q 005656          178 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG-GWIERFNLQSGISRGSYLDMSERSNYAHNGEVV  256 (685)
Q Consensus       178 ~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d-g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~  256 (685)
                                   +.+    .+.....+.+..++|+++++++..-. -.|.+|++..|........     .......-+
T Consensus       137 -------------~p~----~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~-----~v~~G~GPR  194 (346)
T COG2706         137 -------------GPH----ERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPA-----EVKPGAGPR  194 (346)
T ss_pred             -------------CCC----ccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccc-----ccCCCCCcc
Confidence                         000    00223347788999999999887654 5799999997766543321     113445678


Q ss_pred             EEEEcCCCCEEEEEE-CCCeEEEEECCCC--ceEE--E-------eecCCceeEEEEeecCCEEEEEeC-CCeEEEEEcC
Q 005656          257 GVACDSTNTLMISAG-YHGDIKVWDFKGR--DLKS--R-------WEVGCSLVKIVYHRVNGLLATVAD-DLVIRLFDVV  323 (685)
Q Consensus       257 ~l~~~~~~~~l~s~s-~dg~i~iwd~~~~--~~~~--~-------~~~~~~i~~~~~~~~~~~l~~~~~-dg~I~i~d~~  323 (685)
                      .|.|+|++++..... .+++|.+|.....  +...  .       +........+..+++|++|+++.. ...|.+|.+.
T Consensus       195 Hi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~  274 (346)
T COG2706         195 HIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVD  274 (346)
T ss_pred             eEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            999999999876665 7899999998863  2221  1       122366788999999999988754 3478888775


Q ss_pred             C--Cee--EEEEecCCCCeEEEEEcCCCCEEEEEeCC-CcEEEEEcC--CCceeeEEe-eccc-eEEEEEc
Q 005656          324 A--LRM--VRKFEGHTDRITDFCFSEDGKWLLSSGMD-GSLRIWDVI--LARQIDAIH-VDVS-ITALSLS  385 (685)
Q Consensus       324 ~--~~~--~~~~~~h~~~I~~l~~spdg~~l~s~s~D-g~I~iwd~~--~~~~i~~~~-~~~~-v~~v~~s  385 (685)
                      .  +++  +.....+.....+..|+|+|++|+++..+ ..|.+|.+.  +|++-.... ...+ ..||.|.
T Consensus       275 ~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~  345 (346)
T COG2706         275 PDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL  345 (346)
T ss_pred             CCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence            4  332  22223344457899999999999998854 468899775  565543333 1222 5566664

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.55  E-value=6.1e-13  Score=124.62  Aligned_cols=329  Identities=14%  Similarity=0.157  Sum_probs=215.1

Q ss_pred             CcEEEEEEccCCCCEEEEEeCCCcEEEEe-CCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCC
Q 005656            3 GAVTALAFSSDGQPLLASGASSGVISIWN-LEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD   81 (685)
Q Consensus         3 ~~V~~l~fspdg~~~latg~~dg~I~vwd-~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~   81 (685)
                      +.|++...-|-.. -+++.+.|.+++||- .+.++.-..+......+++++.+.+....|+.|-..|++.-+.+...-..
T Consensus        25 d~vn~~~l~~~e~-gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnk  103 (404)
T KOG1409|consen   25 DDVNAAILIPKEE-GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNK  103 (404)
T ss_pred             hhhhhheeccCCC-CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhh
Confidence            3455555555444 577889999999994 45566656665455688999999999999999999999998877654444


Q ss_pred             CceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccc
Q 005656           82 PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE  161 (685)
Q Consensus        82 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (685)
                      ....+....|..+|..+-|+-...++++++.|..+.---.+.+.....+..                        .....
T Consensus       104 m~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~------------------------~~~~t  159 (404)
T KOG1409|consen  104 MTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF------------------------ETPAS  159 (404)
T ss_pred             cchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe------------------------eccCC
Confidence            456666778999999999998889999999998876555554443222110                        00000


Q ss_pred             ccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccc
Q 005656          162 IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYL  241 (685)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~  241 (685)
                      ....+.. ....+...+.+..-++.....  ..+....++...+++++|.+....+.+|..|..+.+||+.-+...... 
T Consensus       160 ~~~~d~~-~~fvGd~~gqvt~lr~~~~~~--~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~e-  235 (404)
T KOG1409|consen  160 ALQFDAL-YAFVGDHSGQITMLKLEQNGC--QLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYE-  235 (404)
T ss_pred             CCceeeE-EEEecccccceEEEEEeecCC--ceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeee-
Confidence            0000111 222233333333333332222  223334488999999999999999999999999999999766554432 


Q ss_pred             cccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEE-----E-------------------------ee
Q 005656          242 DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS-----R-------------------------WE  291 (685)
Q Consensus       242 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-----~-------------------------~~  291 (685)
                            ..+|...|..+...+--+.+++++.||.|.+|+++......     .                         ..
T Consensus       236 ------l~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~  309 (404)
T KOG1409|consen  236 ------LQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQ  309 (404)
T ss_pred             ------eccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhh
Confidence                  23899999999988888899999999999999987542210     0                         00


Q ss_pred             cC----CceeEEEEeecCCEEEEEeCCCeEEEEEcCC-------CeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 005656          292 VG----CSLVKIVYHRVNGLLATVADDLVIRLFDVVA-------LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLR  360 (685)
Q Consensus       292 ~~----~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~-------~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~  360 (685)
                      ++    +...+...+.+.....+-+..-.+|+.|.-.       ..++..+..-...|+.|.+-.+-.+|+|+|.|..|+
T Consensus       310 h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~  389 (404)
T KOG1409|consen  310 HHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIK  389 (404)
T ss_pred             hhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEE
Confidence            00    1112222222222222333334555554321       123444433334599999988888999999999999


Q ss_pred             EEEcCC
Q 005656          361 IWDVIL  366 (685)
Q Consensus       361 iwd~~~  366 (685)
                      |||+.+
T Consensus       390 iwd~~~  395 (404)
T KOG1409|consen  390 IWDVRS  395 (404)
T ss_pred             EEechh
Confidence            999864

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.53  E-value=4.8e-12  Score=134.54  Aligned_cols=204  Identities=14%  Similarity=0.110  Sum_probs=137.9

Q ss_pred             ccCCCCCeEEEEecCCCEEEEEeCC---CceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccccccc
Q 005656           89 SGHSAPPLCIRFYANGRHILSAGQD---RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRER  165 (685)
Q Consensus        89 ~~h~~~v~~i~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (685)
                      ..+...+.+.+|+|||++|+.++.+   ..|++||+.+++.....                                   
T Consensus       186 ~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~-----------------------------------  230 (417)
T TIGR02800       186 TRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA-----------------------------------  230 (417)
T ss_pred             ecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee-----------------------------------
Confidence            3566678899999999999987654   46888888665432111                                   


Q ss_pred             CCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEE-ecCC--cEEEEECCCCcccccccc
Q 005656          166 DWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAGG--WIERFNLQSGISRGSYLD  242 (685)
Q Consensus       166 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~dg--~i~~~d~~~~~~~~~~~~  242 (685)
                                                        .....+.+++|+|+|+.+++. +.++  .|++||+.++......  
T Consensus       231 ----------------------------------~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~--  274 (417)
T TIGR02800       231 ----------------------------------SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLT--  274 (417)
T ss_pred             ----------------------------------cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECC--
Confidence                                              122345567899999987654 4343  5899999887543322  


Q ss_pred             ccccccCCCCcCEEEEEEcCCCCEEEEEECC-C--eEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCC---e
Q 005656          243 MSERSNYAHNGEVVGVACDSTNTLMISAGYH-G--DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDL---V  316 (685)
Q Consensus       243 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d-g--~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~  316 (685)
                             .+........|+|+++.|+.++.. +  .|+++|+.+++...............|+|+|++++.++.++   .
T Consensus       275 -------~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~  347 (417)
T TIGR02800       275 -------NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFN  347 (417)
T ss_pred             -------CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceE
Confidence                   333445567899999988776643 3  68888988776554443445667889999999999888776   8


Q ss_pred             EEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCceeeEE
Q 005656          317 IRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG---SLRIWDVILARQIDAI  373 (685)
Q Consensus       317 I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg---~I~iwd~~~~~~i~~~  373 (685)
                      |.+||+.++.. ..+... .......|+|||++|+.++.++   .+++.+. ++.....+
T Consensus       348 i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~  404 (417)
T TIGR02800       348 IAVMDLDGGGE-RVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARL  404 (417)
T ss_pred             EEEEeCCCCCe-EEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeEC
Confidence            99999988654 333322 2345668999999998877654   3555553 34444444

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.52  E-value=2e-10  Score=114.41  Aligned_cols=266  Identities=14%  Similarity=0.124  Sum_probs=170.0

Q ss_pred             CcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecC----------CCcEEEEEecCCCCCCceeEecccC---
Q 005656           25 GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA----------DNSIKMWIFDTTDGDPRLLRFRSGH---   91 (685)
Q Consensus        25 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~----------D~~v~iWd~~~~~~~~~~~~~~~~h---   91 (685)
                      |.|.+.|..+++.+..+..+....  .+ ++||++.|+.+..          +..|.+||..+.    +.+..+.-.   
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~----~~~~~i~~p~~p   99 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH----LPIADIELPEGP   99 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC----cEEeEEccCCCc
Confidence            899999999999999998554433  34 9999997776655          789999999887    444333221   


Q ss_pred             ----CCCCeEEEEecCCCEEEEEe-C-CCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccccccc
Q 005656           92 ----SAPPLCIRFYANGRHILSAG-Q-DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRER  165 (685)
Q Consensus        92 ----~~~v~~i~~~~~~~~l~s~s-~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (685)
                          ......++++|||++++... . +..|.+.|+.+++...++..+.                               
T Consensus       100 ~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-------------------------------  148 (352)
T TIGR02658       100 RFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-------------------------------  148 (352)
T ss_pred             hhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-------------------------------
Confidence                22345789999999999776 3 6899999999998877764210                               


Q ss_pred             CCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECCCCcccccccccc
Q 005656          166 DWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-AGGWIERFNLQSGISRGSYLDMS  244 (685)
Q Consensus       166 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~dg~i~~~d~~~~~~~~~~~~~~  244 (685)
                                 ...++.                   ...-..+..+.||..+.+.. .+|....=+..      .+.. .
T Consensus       149 -----------~~~vy~-------------------t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~------vf~~-~  191 (352)
T TIGR02658       149 -----------CYHIFP-------------------TANDTFFMHCRDGSLAKVGYGTKGNPKIKPTE------VFHP-E  191 (352)
T ss_pred             -----------CcEEEE-------------------ecCCccEEEeecCceEEEEecCCCceEEeeee------eecC-C
Confidence                       000000                   00011112223444333222 22321110000      0000 0


Q ss_pred             ccccCCCCcCEEEEEEcC-CCCEEEEEECCCeEEEEECCCC-----ceEEEeec--------CCceeEEEEeecCCEEEE
Q 005656          245 ERSNYAHNGEVVGVACDS-TNTLMISAGYHGDIKVWDFKGR-----DLKSRWEV--------GCSLVKIVYHRVNGLLAT  310 (685)
Q Consensus       245 ~~~~~~h~~~v~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~-----~~~~~~~~--------~~~i~~~~~~~~~~~l~~  310 (685)
                        ...-...+    .+.+ +|++++.... |+|.+.|+...     .....+..        ++...-++++++++.+++
T Consensus       192 --~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV  264 (352)
T TIGR02658       192 --DEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYL  264 (352)
T ss_pred             --ccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEE
Confidence              00001112    3345 7777766655 99999996543     22222211        133445999999998887


Q ss_pred             Ee----------CCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCC-EEEEEe-CCCcEEEEEcCCCceeeEE
Q 005656          311 VA----------DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK-WLLSSG-MDGSLRIWDVILARQIDAI  373 (685)
Q Consensus       311 ~~----------~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~-~l~s~s-~Dg~I~iwd~~~~~~i~~~  373 (685)
                      ..          ..+.|.++|..+++.+..+.. ...+..++++||++ +|++.. .++.|.++|..+++.+..+
T Consensus       265 ~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       265 LADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             EecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            43          225899999999999998873 34789999999999 887666 6788999999999999887

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.48  E-value=7.4e-12  Score=125.06  Aligned_cols=308  Identities=13%  Similarity=0.197  Sum_probs=193.1

Q ss_pred             cEEEEEEccCCCCEEEEE-------e---CCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEE
Q 005656            4 AVTALAFSSDGQPLLASG-------A---SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMW   73 (685)
Q Consensus         4 ~V~~l~fspdg~~~latg-------~---~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iW   73 (685)
                      .++++-|||-|. +|.|=       .   ..-.+.+|+++++.....+....... .+..|+.|..+.+- -..+.+.+|
T Consensus        75 ~~~~L~fSP~g~-yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~dEsl~ar-lv~nev~f~  151 (566)
T KOG2315|consen   75 KTYDLLFSPKGN-YLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSIDESLAAR-LVSNEVQFY  151 (566)
T ss_pred             eeeeeeeccccc-ccccccccccccCCCCCCCceeeeeeccceehhheehhhhcC-cccccccchhhhhh-hhcceEEEE
Confidence            467899999998 66652       1   12457899999977666665333443 68999998764332 234689999


Q ss_pred             EecCCCCCCceeEecccCCCCCeEEEEecCC--CEEEE-----EeCCCceEEEEeecCceeeEechhhHHHHHhhccccc
Q 005656           74 IFDTTDGDPRLLRFRSGHSAPPLCIRFYANG--RHILS-----AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKE  146 (685)
Q Consensus        74 d~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~--~~l~s-----~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (685)
                      +......   ...  .-|...|+.+.++|.+  ..+++     .|.-+.|++|..........+...             
T Consensus       152 ~~~~f~~---~~~--kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~k-------------  213 (566)
T KOG2315|consen  152 DLGSFKT---IQH--KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANK-------------  213 (566)
T ss_pred             ecCCccc---eee--eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhc-------------
Confidence            8876432   222  2357788999999863  23332     345567888876532221111100             


Q ss_pred             cccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcE
Q 005656          147 EELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWI  226 (685)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i  226 (685)
                                               +....+.....|+-.               ...+..++-+.-.+.=.+-+....+
T Consensus       214 -------------------------sFFkadkvqm~WN~~---------------gt~LLvLastdVDktn~SYYGEq~L  253 (566)
T KOG2315|consen  214 -------------------------SFFKADKVQMKWNKL---------------GTALLVLASTDVDKTNASYYGEQTL  253 (566)
T ss_pred             -------------------------cccccceeEEEeccC---------------CceEEEEEEEeecCCCccccccceE
Confidence                                     000111222223211               1111122111111111122234468


Q ss_pred             EEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEE--ECCCeEEEEECCCCceEEEeecCCceeEEEEeec
Q 005656          227 ERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA--GYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRV  304 (685)
Q Consensus       227 ~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~--s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~  304 (685)
                      ++++++....+..+         ...++|.++.|+++++.++++  -.-..+.|+|++.. ++..+ ..++-+++-|+|.
T Consensus       254 yll~t~g~s~~V~L---------~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-~v~df-~egpRN~~~fnp~  322 (566)
T KOG2315|consen  254 YLLATQGESVSVPL---------LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-PVFDF-PEGPRNTAFFNPH  322 (566)
T ss_pred             EEEEecCceEEEec---------CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-EeEeC-CCCCccceEECCC
Confidence            88888733333332         567999999999999876554  36678999998743 33332 2367789999999


Q ss_pred             CCEEEEEeCC---CeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeC------CCcEEEEEcCCCceeeEEee
Q 005656          305 NGLLATVADD---LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM------DGSLRIWDVILARQIDAIHV  375 (685)
Q Consensus       305 ~~~l~~~~~d---g~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~------Dg~I~iwd~~~~~~i~~~~~  375 (685)
                      |++++.++-+   |.+-|||+.+.+++..+....  -+-+.|+|||++++|++.      |+.++||+. +|.++.....
T Consensus       323 g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~f  399 (566)
T KOG2315|consen  323 GNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEKMF  399 (566)
T ss_pred             CCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeehhhh
Confidence            9988887764   799999999999998887544  355789999999998864      678999996 5777666555


Q ss_pred             ccceEEEEEcC
Q 005656          376 DVSITALSLSP  386 (685)
Q Consensus       376 ~~~v~~v~~sp  386 (685)
                      .+....+.|-|
T Consensus       400 ~sEL~qv~W~P  410 (566)
T KOG2315|consen  400 KSELLQVEWRP  410 (566)
T ss_pred             hHhHhheeeee
Confidence            54566666655

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.48  E-value=7.8e-12  Score=127.54  Aligned_cols=288  Identities=14%  Similarity=0.137  Sum_probs=207.1

Q ss_pred             ccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCC-----------ceeEecccCCCCCeEEEEecCCCEEEEEeC
Q 005656           44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP-----------RLLRFRSGHSAPPLCIRFYANGRHILSAGQ  112 (685)
Q Consensus        44 ~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~-----------~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~  112 (685)
                      .......|++|+....+++.||.||.+++-.+.+.....           ..-.++.||.+.|.-+.|+.+.+.|-+...
T Consensus        12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt   91 (1189)
T KOG2041|consen   12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT   91 (1189)
T ss_pred             CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence            345678899999999999999999999999887653211           112456899999999999999889999999


Q ss_pred             CCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCc
Q 005656          113 DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGE  192 (685)
Q Consensus       113 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~  192 (685)
                      +|-|.+|-+-.+.-..+...                                                            
T Consensus        92 ~GlIiVWmlykgsW~EEMiN------------------------------------------------------------  111 (1189)
T KOG2041|consen   92 SGLIIVWMLYKGSWCEEMIN------------------------------------------------------------  111 (1189)
T ss_pred             CceEEEEeeecccHHHHHhh------------------------------------------------------------
Confidence            99999998876653322210                                                            


Q ss_pred             eeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC
Q 005656          193 HILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY  272 (685)
Q Consensus       193 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~  272 (685)
                            ....+.|.+++|+.+|..+.+.+.||.|.+=.+.....-..-.         .......+.|++|.+.+..+-.
T Consensus       112 ------nRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeL---------kg~~l~hv~ws~D~~~~Lf~~a  176 (1189)
T KOG2041|consen  112 ------NRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKEL---------KGQLLAHVLWSEDLEQALFKKA  176 (1189)
T ss_pred             ------CcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhc---------chheccceeecccHHHHHhhhc
Confidence                  0345678999999999999999999999887766544332211         1123457899999998888888


Q ss_pred             CCeEEEEECCCCc-----eEEEee-------cCCceeEEEEe--------ecCCEEEEEeCCCeEEEEEcCCCeeEEEEe
Q 005656          273 HGDIKVWDFKGRD-----LKSRWE-------VGCSLVKIVYH--------RVNGLLATVADDLVIRLFDVVALRMVRKFE  332 (685)
Q Consensus       273 dg~i~iwd~~~~~-----~~~~~~-------~~~~i~~~~~~--------~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~  332 (685)
                      +|.+.++|....-     ......       .+..+..+.|.        |+...++++..+|.+.|..-.+......+.
T Consensus       177 nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d  256 (1189)
T KOG2041|consen  177 NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD  256 (1189)
T ss_pred             CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe
Confidence            9999999976421     111111       11234445543        467799999999998887554432222222


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCC---------CcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEE
Q 005656          333 GHTDRITDFCFSEDGKWLLSSGMD---------GSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVY  402 (685)
Q Consensus       333 ~h~~~I~~l~~spdg~~l~s~s~D---------g~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~  402 (685)
                       ..-.|.++.|+++|..|+.++.|         +.|.+|. +-|+.+.+++.++. |++++|-..|-.+|.+- |+ .|+
T Consensus       257 -tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~Av-ds-fiy  332 (1189)
T KOG2041|consen  257 -TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAIAV-DS-FIY  332 (1189)
T ss_pred             -cccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEEEEe-cc-eEE
Confidence             22568899999999999998864         2466665 67889999988777 99999998888877775 44 666


Q ss_pred             EEEcCCCc
Q 005656          403 LWVNRCMF  410 (685)
Q Consensus       403 lW~~~~~~  410 (685)
                      +=+.|+.|
T Consensus       333 fanIRP~y  340 (1189)
T KOG2041|consen  333 FANIRPEY  340 (1189)
T ss_pred             EEeecccc
Confidence            55444443

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.48  E-value=1.5e-11  Score=115.28  Aligned_cols=275  Identities=16%  Similarity=0.225  Sum_probs=181.1

Q ss_pred             cccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCC-CCCceeEecccCC------------CCCeEEEEecCC--CEEEE
Q 005656           45 HDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD-GDPRLLRFRSGHS------------APPLCIRFYANG--RHILS  109 (685)
Q Consensus        45 h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~-~~~~~~~~~~~h~------------~~v~~i~~~~~~--~~l~s  109 (685)
                      -.+-|.++.|...|.+|+||..+|.|.++.-+... +.......+..|.            ..|..+.|.+++  ..++.
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl  103 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL  103 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence            45678999999999999999999999998644332 2233444444453            468899999864  46777


Q ss_pred             EeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccc
Q 005656          110 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV  189 (685)
Q Consensus       110 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~  189 (685)
                      .+.|.+|++|.+........-.                  .++                                     
T Consensus       104 stNdktiKlWKi~er~~k~~~~------------------~~~-------------------------------------  128 (433)
T KOG1354|consen  104 STNDKTIKLWKIRERGSKKEGY------------------NLP-------------------------------------  128 (433)
T ss_pred             ecCCcceeeeeeeccccccccc------------------ccc-------------------------------------
Confidence            8889999999986543222000                  000                                     


Q ss_pred             cCceeecCCCCCCCCeEEE---EEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCE
Q 005656          190 LGEHILRPCPENPTAVKAC---TISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTL  266 (685)
Q Consensus       190 ~~~~~~~~~~~~~~~v~~~---~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  266 (685)
                              .......++++   .+.+....+.+.               +++.+.       .+|.--|.++.++.|...
T Consensus       129 --------~~~~~~~~~~lr~p~~~~~~~~vea~---------------prRv~a-------NaHtyhiNSIS~NsD~Et  178 (433)
T KOG1354|consen  129 --------EEGPPGTITSLRLPVEGRHDLEVEAS---------------PRRVYA-------NAHTYHINSISVNSDKET  178 (433)
T ss_pred             --------ccCCCCccceeeceeeccccceeeee---------------eeeecc-------ccceeEeeeeeecCccce
Confidence                    00011111111   112222111111               112221       289999999999999998


Q ss_pred             EEEEECCCeEEEEECCC-CceEEEeec---C-----CceeEEEEeecC-CEEEEEeCCCeEEEEEcCCCee----EEEE-
Q 005656          267 MISAGYHGDIKVWDFKG-RDLKSRWEV---G-----CSLVKIVYHRVN-GLLATVADDLVIRLFDVVALRM----VRKF-  331 (685)
Q Consensus       267 l~s~s~dg~i~iwd~~~-~~~~~~~~~---~-----~~i~~~~~~~~~-~~l~~~~~dg~I~i~d~~~~~~----~~~~-  331 (685)
                      ++++. |=.|.+|++.- .+.......   .     .-|++..|+|.. ++++..+..|+|++.|++...+    ...| 
T Consensus       179 ~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfE  257 (433)
T KOG1354|consen  179 FLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFE  257 (433)
T ss_pred             Eeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhc
Confidence            88774 77899999873 222222221   1     458888999965 4888888999999999984321    1111 


Q ss_pred             -----------ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC-CCceeeEEeeccc----------------eEEEE
Q 005656          332 -----------EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI-LARQIDAIHVDVS----------------ITALS  383 (685)
Q Consensus       332 -----------~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~-~~~~i~~~~~~~~----------------v~~v~  383 (685)
                                 .+--..|.++.|+++|+|+++-+. -+|++||+. ..+++.++..|..                -..++
T Consensus       258 epedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~  336 (433)
T KOG1354|consen  258 EPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECS  336 (433)
T ss_pred             cccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEE
Confidence                       122346899999999999998764 579999994 5667776665321                35689


Q ss_pred             EcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          384 LSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       384 ~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                      |+.++.+++||+... .++++++.
T Consensus       337 ~sg~~~~v~TGsy~n-~frvf~~~  359 (433)
T KOG1354|consen  337 WSGNDSYVMTGSYNN-VFRVFNLA  359 (433)
T ss_pred             EcCCcceEecccccc-eEEEecCC
Confidence            999999999999885 89999743

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.47  E-value=1.6e-11  Score=130.52  Aligned_cols=187  Identities=15%  Similarity=0.080  Sum_probs=136.1

Q ss_pred             CCCeEEEEEccCCCEEEEEecC---CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEE-ECCC--e
Q 005656          202 PTAVKACTISACGNFAVLGTAG---GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA-GYHG--D  275 (685)
Q Consensus       202 ~~~v~~~~~s~~g~~l~~g~~d---g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-s~dg--~  275 (685)
                      ...+...+|+|+|++++.+...   ..|++||+.++......         .+.+.+.+++|+|+++.|+.. +.++  .
T Consensus       189 ~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~---------~~~~~~~~~~~spDg~~l~~~~~~~~~~~  259 (417)
T TIGR02800       189 REPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA---------SFPGMNGAPAFSPDGSKLAVSLSKDGNPD  259 (417)
T ss_pred             CCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee---------cCCCCccceEECCCCCEEEEEECCCCCcc
Confidence            4457788899999999887654   47999999887553321         344566778999999877644 4444  5


Q ss_pred             EEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCC-C--eEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEE
Q 005656          276 IKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD-L--VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLS  352 (685)
Q Consensus       276 i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s  352 (685)
                      |++||+.++................|+|+|+.|+..+.. +  .|+++|+.+++. ..+..+...+....|+|||++|+.
T Consensus       260 i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~  338 (417)
T TIGR02800       260 IYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAF  338 (417)
T ss_pred             EEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEE
Confidence            999999887665544444445577899999988776543 2  688889887764 344445566788899999999998


Q ss_pred             EeCCC---cEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCCC
Q 005656          353 SGMDG---SLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQN  399 (685)
Q Consensus       353 ~s~Dg---~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~  399 (685)
                      ++.++   .|.+||+.++.. ..+..........|+|||++|+.++.+++
T Consensus       339 ~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~p~~spdg~~l~~~~~~~~  387 (417)
T TIGR02800       339 VHREGGGFNIAVMDLDGGGE-RVLTDTGLDESPSFAPNGRMILYATTRGG  387 (417)
T ss_pred             EEccCCceEEEEEeCCCCCe-EEccCCCCCCCceECCCCCEEEEEEeCCC
Confidence            88776   799999987654 33332333556789999999999888763

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.47  E-value=5.4e-11  Score=117.48  Aligned_cols=301  Identities=13%  Similarity=0.166  Sum_probs=201.0

Q ss_pred             cEEEEEEccCCCCEEEEEeC---------------CCcEEEEeCCCCeeeEEeecccccC--ee-EEEEeCCCcEEEEec
Q 005656            4 AVTALAFSSDGQPLLASGAS---------------SGVISIWNLEKRRLQSVIREAHDNA--II-SLHFFANEPVLMSAS   65 (685)
Q Consensus         4 ~V~~l~fspdg~~~latg~~---------------dg~I~vwd~~~~~~~~~~~~~h~~~--V~-~l~~sp~~~~l~s~s   65 (685)
                      .|.-+.|||.|+ +|.|=+.               ++.+.+||..++.++..+. +...+  .. -+.|+-+.+++|-. 
T Consensus        73 ~V~~~~fSP~~k-YL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~-~~~q~~~~Wp~~k~s~~D~y~ARv-  149 (561)
T COG5354          73 DVKYLDFSPNEK-YLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFN-GISQPYLGWPVLKFSIDDKYVARV-  149 (561)
T ss_pred             CceecccCcccc-eeeeeccCCccChhhccCCccccCceeEEeccCceeEeecc-ccCCcccccceeeeeecchhhhhh-
Confidence            477889999999 8887543               2359999999999999887 55444  44 68899988877655 


Q ss_pred             CCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCC--CEEEE-----EeCCCceEEEEeecCceeeEechhhHHHH
Q 005656           66 ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG--RHILS-----AGQDRAFRLFSVIQDQQSRELSQRHVAKR  138 (685)
Q Consensus        66 ~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~--~~l~s-----~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  138 (685)
                      ....+.|+++ +..-.......++  ...|....|+|.+  ..|+.     .+.++++++|.+..+.....-.       
T Consensus       150 v~~sl~i~e~-t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~-------  219 (561)
T COG5354         150 VGSSLYIHEI-TDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN-------  219 (561)
T ss_pred             ccCeEEEEec-CCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeee-------
Confidence            3357899986 4322222222222  3457778888864  23332     3456677777765433322211       


Q ss_pred             HhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEE
Q 005656          139 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAV  218 (685)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  218 (685)
                                                                                   .....-..+.|.+.|++++
T Consensus       220 -------------------------------------------------------------lfk~~~~qLkW~~~g~~ll  238 (561)
T COG5354         220 -------------------------------------------------------------LFKVSGVQLKWQVLGKYLL  238 (561)
T ss_pred             -------------------------------------------------------------eEeecccEEEEecCCceEE
Confidence                                                                         0011123445666666654


Q ss_pred             EEe-----------cCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE--CCCeEEEEECCCCc
Q 005656          219 LGT-----------AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG--YHGDIKVWDFKGRD  285 (685)
Q Consensus       219 ~g~-----------~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s--~dg~i~iwd~~~~~  285 (685)
                      +-.           ....+++++++........         .-.++|...+|.|.++.+++++  .+..+.++|++.. 
T Consensus       239 ~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~---------~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-  308 (561)
T COG5354         239 VLVMTHTKSNKSYFGESNLYLLRITERSIPVEK---------DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-  308 (561)
T ss_pred             EEEEEeeecccceeccceEEEEeecccccceec---------cccccceeeeecccCCceeEEecccccceeecccccc-
Confidence            421           2245788888744333221         4578999999999988776554  7788999999876 


Q ss_pred             eEEEeecCCceeEEEEeecCCEEEEEeCC---CeEEEEEcCCCeeEE-EEecCCCCeEEEEEcCCCCEEEEEe------C
Q 005656          286 LKSRWEVGCSLVKIVYHRVNGLLATVADD---LVIRLFDVVALRMVR-KFEGHTDRITDFCFSEDGKWLLSSG------M  355 (685)
Q Consensus       286 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~I~i~d~~~~~~~~-~~~~h~~~I~~l~~spdg~~l~s~s------~  355 (685)
                       +...-....-..+.|+|.++++++++-|   |.|-+||......+. .+.+.+  .+-+.|+|||.++.++.      .
T Consensus       309 -l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~  385 (561)
T COG5354         309 -LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRV  385 (561)
T ss_pred             -eEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCccccc
Confidence             4444445666788999999998887765   689999988765444 666544  34568999999888664      4


Q ss_pred             CCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCC
Q 005656          356 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ  398 (685)
Q Consensus       356 Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~  398 (685)
                      |..|+|||+......       ..+.+.|.|.|++..+.+.+.
T Consensus       386 Dn~i~l~~v~g~~~f-------el~~~~W~p~~~~~ttsSs~~  421 (561)
T COG5354         386 DNSIKLWDVYGAKVF-------ELTNITWDPSGQYVTTSSSCP  421 (561)
T ss_pred             CcceEEEEecCchhh-------hhhhccccCCcccceeeccCC
Confidence            788999998654332       567889999988887776553

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=2.1e-11  Score=129.11  Aligned_cols=169  Identities=13%  Similarity=0.016  Sum_probs=111.0

Q ss_pred             EEEEEccCCCEEEE-EecCCc--EEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC-CC--eEEEE
Q 005656          206 KACTISACGNFAVL-GTAGGW--IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-HG--DIKVW  279 (685)
Q Consensus       206 ~~~~~s~~g~~l~~-g~~dg~--i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-dg--~i~iw  279 (685)
                      ....|+|+|+.++. ...+|.  |+++|+.++......         .+.......+|+|+|+.++..+. ++  .|+++
T Consensus       265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt---------~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~  335 (448)
T PRK04792        265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRIT---------RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRV  335 (448)
T ss_pred             CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECc---------cCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence            35789999998875 455564  888898887654322         34445677899999998876653 33  57777


Q ss_pred             ECCCCceEEEeecCCceeEEEEeecCCEEEEEeCC-C--eEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeC-
Q 005656          280 DFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD-L--VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM-  355 (685)
Q Consensus       280 d~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~-  355 (685)
                      |+.+++..............+|+|+|++++..+.+ +  .|.++|+.+++.. .+... .......|+|||++|+..+. 
T Consensus       336 dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~  413 (448)
T PRK04792        336 NLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTY  413 (448)
T ss_pred             ECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEec
Confidence            88777654432222333457899999988776553 3  5667888887643 33322 12234589999998886654 


Q ss_pred             CC--cEEEEEcCCCceeeEEeec-cceEEEEEcC
Q 005656          356 DG--SLRIWDVILARQIDAIHVD-VSITALSLSP  386 (685)
Q Consensus       356 Dg--~I~iwd~~~~~~i~~~~~~-~~v~~v~~sp  386 (685)
                      +|  .+++++. +|.....+..+ ..+...+|||
T Consensus       414 ~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        414 QGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             CCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence            33  3777786 56666656543 3477788887

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=2.3e-11  Score=129.48  Aligned_cols=217  Identities=14%  Similarity=0.049  Sum_probs=141.4

Q ss_pred             ccCCCCCeEEEEecCCCEEEEEeCC---CceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccccccc
Q 005656           89 SGHSAPPLCIRFYANGRHILSAGQD---RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRER  165 (685)
Q Consensus        89 ~~h~~~v~~i~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (685)
                      ..+...+....|+|||+.|+..+.+   ..|.+|++.+++.....                                   
T Consensus       195 ~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~-----------------------------------  239 (430)
T PRK00178        195 LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT-----------------------------------  239 (430)
T ss_pred             ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc-----------------------------------
Confidence            3567788999999999999877643   35777887665432111                                   


Q ss_pred             CCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEE-ecCC--cEEEEECCCCcccccccc
Q 005656          166 DWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAGG--WIERFNLQSGISRGSYLD  242 (685)
Q Consensus       166 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~dg--~i~~~d~~~~~~~~~~~~  242 (685)
                                                        .....+....|+|+|+.++.. ..+|  .|++||+.++......  
T Consensus       240 ----------------------------------~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt--  283 (430)
T PRK00178        240 ----------------------------------NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVT--  283 (430)
T ss_pred             ----------------------------------CCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcc--
Confidence                                              112234467899999988754 3444  6888999987654321  


Q ss_pred             ccccccCCCCcCEEEEEEcCCCCEEEEEEC-CC--eEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCC-C--e
Q 005656          243 MSERSNYAHNGEVVGVACDSTNTLMISAGY-HG--DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD-L--V  316 (685)
Q Consensus       243 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~  316 (685)
                             .+........|+|+|+.++..+. +|  .|+++|+.+++...............|+|+|+.++....+ +  .
T Consensus       284 -------~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~  356 (430)
T PRK00178        284 -------NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFH  356 (430)
T ss_pred             -------cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceE
Confidence                   34445567889999998876653 33  5888888877754433223334457899999988877653 2  5


Q ss_pred             EEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCceeeEEeec-cceEEEEEcC
Q 005656          317 IRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD---GSLRIWDVILARQIDAIHVD-VSITALSLSP  386 (685)
Q Consensus       317 I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~D---g~I~iwd~~~~~~i~~~~~~-~~v~~v~~sp  386 (685)
                      |.+||+.+++. +.+. +........|+|||++++.++.+   ..|.++++. |.....+..+ ..+...+|+|
T Consensus       357 l~~~dl~tg~~-~~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~  427 (430)
T PRK00178        357 VAAQDLQRGSV-RILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSP  427 (430)
T ss_pred             EEEEECCCCCE-EEcc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCC
Confidence            88999988764 3333 22223356899999999876643   346777764 3333344333 3366777776

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.46  E-value=6e-10  Score=114.28  Aligned_cols=271  Identities=13%  Similarity=0.172  Sum_probs=170.3

Q ss_pred             EEEEEEccCCCCEEEEEeC----CCcEEEEeCCCC--ee--eEEeecccccCeeEEEEeCCCcEEEEec-CCCcEEEEEe
Q 005656            5 VTALAFSSDGQPLLASGAS----SGVISIWNLEKR--RL--QSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIF   75 (685)
Q Consensus         5 V~~l~fspdg~~~latg~~----dg~I~vwd~~~~--~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~s-~D~~v~iWd~   75 (685)
                      -+.++++|+++ +|.+...    +|.|..|.+...  ++  +.... ........++++|++++|+++. .+|+|.++++
T Consensus        39 Ps~l~~~~~~~-~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~-~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l  116 (345)
T PF10282_consen   39 PSWLAVSPDGR-RLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVP-SGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL  116 (345)
T ss_dssp             ECCEEE-TTSS-EEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEE-ESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CceEEEEeCCC-EEEEEEccccCCCCEEEEEECCCcceeEEeeeec-cCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence            45688999998 6666654    678999988763  43  33332 2344567899999999888886 4899999999


Q ss_pred             cCCCCCCceeEec----------ccCCCCCeEEEEecCCCEEEEEeC-CCceEEEEeecCce-eeEechhhHHHHHhhcc
Q 005656           76 DTTDGDPRLLRFR----------SGHSAPPLCIRFYANGRHILSAGQ-DRAFRLFSVIQDQQ-SRELSQRHVAKRARKLK  143 (685)
Q Consensus        76 ~~~~~~~~~~~~~----------~~h~~~v~~i~~~~~~~~l~s~s~-dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~  143 (685)
                      +............          ......+.++.|+|+|++++++.. ...|.+|++..... .....            
T Consensus       117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~------------  184 (345)
T PF10282_consen  117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVD------------  184 (345)
T ss_dssp             CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEE------------
T ss_pred             cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEee------------
Confidence            8752211221111          112345689999999999888753 34788888865541 11100            


Q ss_pred             ccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec-
Q 005656          144 MKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA-  222 (685)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-  222 (685)
                                                                        .+.  .......+.++|+|+|+++++... 
T Consensus       185 --------------------------------------------------~~~--~~~G~GPRh~~f~pdg~~~Yv~~e~  212 (345)
T PF10282_consen  185 --------------------------------------------------SIK--VPPGSGPRHLAFSPDGKYAYVVNEL  212 (345)
T ss_dssp             --------------------------------------------------EEE--CSTTSSEEEEEE-TTSSEEEEEETT
T ss_pred             --------------------------------------------------ccc--cccCCCCcEEEEcCCcCEEEEecCC
Confidence                                                              000  033566899999999999876654 


Q ss_pred             CCcEEEEECC--CCcccc--ccccccccccCCCCcCEEEEEEcCCCCEEEEEE-CCCeEEEEECC--CCce--EEEeec-
Q 005656          223 GGWIERFNLQ--SGISRG--SYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFK--GRDL--KSRWEV-  292 (685)
Q Consensus       223 dg~i~~~d~~--~~~~~~--~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~--~~~~--~~~~~~-  292 (685)
                      ++.|.+|++.  .+....  .....+  ...........+.++|+|++|+++. .++.|.+|++.  ++.+  +..+.. 
T Consensus       213 s~~v~v~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~  290 (345)
T PF10282_consen  213 SNTVSVFDYDPSDGSLTEIQTISTLP--EGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG  290 (345)
T ss_dssp             TTEEEEEEEETTTTEEEEEEEEESCE--TTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES
T ss_pred             CCcEEEEeecccCCceeEEEEeeecc--ccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC
Confidence            6789999888  442211  111110  1112223688999999999887766 56789999994  3443  333443 


Q ss_pred             CCceeEEEEeecCCEEEEEeC-CCeEEEEEc--CCCeeEEEEe-cCCCCeEEEEE
Q 005656          293 GCSLVKIVYHRVNGLLATVAD-DLVIRLFDV--VALRMVRKFE-GHTDRITDFCF  343 (685)
Q Consensus       293 ~~~i~~~~~~~~~~~l~~~~~-dg~I~i~d~--~~~~~~~~~~-~h~~~I~~l~~  343 (685)
                      ......+.++|+|++|+++.. ++.|.+|++  .+|.+...-. -.-....||.|
T Consensus       291 G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f  345 (345)
T PF10282_consen  291 GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF  345 (345)
T ss_dssp             SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred             CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence            345889999999999888874 568999876  4666544332 23344666665

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=3.1e-11  Score=128.44  Aligned_cols=233  Identities=11%  Similarity=0.098  Sum_probs=149.9

Q ss_pred             cEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCC---CcEEEEEecCCCCCCceeEecccCCCCCeEEEEec
Q 005656           26 VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD---NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA  102 (685)
Q Consensus        26 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D---~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~  102 (685)
                      .|.++|.+.+... .+. .+...+.+..|+|||+.|+..+.+   ..|.+|+++++.  .+.+.   ...+.+....|+|
T Consensus       180 ~l~~~d~~g~~~~-~l~-~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~--~~~l~---~~~g~~~~~~~Sp  252 (430)
T PRK00178        180 TLQRSDYDGARAV-TLL-QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR--REQIT---NFEGLNGAPAWSP  252 (430)
T ss_pred             EEEEECCCCCCce-EEe-cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC--EEEcc---CCCCCcCCeEECC
Confidence            4888888766544 343 567789999999999988776543   357777776542  22222   2334455789999


Q ss_pred             CCCEEE-EEeCCC--ceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCce
Q 005656          103 NGRHIL-SAGQDR--AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQ  179 (685)
Q Consensus       103 ~~~~l~-s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (685)
                      ||+.|+ +.+.+|  .|.+||+.++.... +.                                                
T Consensus       253 DG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt------------------------------------------------  283 (430)
T PRK00178        253 DGSKLAFVLSKDGNPEIYVMDLASRQLSR-VT------------------------------------------------  283 (430)
T ss_pred             CCCEEEEEEccCCCceEEEEECCCCCeEE-cc------------------------------------------------
Confidence            999887 444455  46666765543211 10                                                


Q ss_pred             EEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec-CC--cEEEEECCCCccccccccccccccCCCCcCEE
Q 005656          180 AYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA-GG--WIERFNLQSGISRGSYLDMSERSNYAHNGEVV  256 (685)
Q Consensus       180 ~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-dg--~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~  256 (685)
                                          .+........|+|+|+.++..+. +|  .|+++++.++.......         ......
T Consensus       284 --------------------~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~---------~~~~~~  334 (430)
T PRK00178        284 --------------------NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF---------VGNYNA  334 (430)
T ss_pred             --------------------cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec---------CCCCcc
Confidence                                11223445689999998877664 33  58888887776433211         112234


Q ss_pred             EEEEcCCCCEEEEEECC-C--eEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCC---CeEEEEEcCCCeeEEE
Q 005656          257 GVACDSTNTLMISAGYH-G--DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD---LVIRLFDVVALRMVRK  330 (685)
Q Consensus       257 ~l~~~~~~~~l~s~s~d-g--~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~I~i~d~~~~~~~~~  330 (685)
                      ...|+|+|+.++..+.+ +  .|.+||+.+++.... ..........|+|+|+.++..+.+   ..++++++. +...+.
T Consensus       335 ~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~l-t~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~  412 (430)
T PRK00178        335 RPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRIL-TDTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLP  412 (430)
T ss_pred             ceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEc-cCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEE
Confidence            57899999998877643 3  588899988765433 222233356899999988776654   357777775 444455


Q ss_pred             EecCCCCeEEEEEcC
Q 005656          331 FEGHTDRITDFCFSE  345 (685)
Q Consensus       331 ~~~h~~~I~~l~~sp  345 (685)
                      +..+.+.+...+|+|
T Consensus       413 l~~~~g~~~~p~ws~  427 (430)
T PRK00178        413 LPTAQGEVREPSWSP  427 (430)
T ss_pred             CcCCCCCcCCCccCC
Confidence            655667778888887

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.45  E-value=8.1e-10  Score=110.16  Aligned_cols=261  Identities=9%  Similarity=0.059  Sum_probs=167.5

Q ss_pred             CcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeC----------CCceEEEEeecCceeeEechhhHHH
Q 005656           68 NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ----------DRAFRLFSVIQDQQSRELSQRHVAK  137 (685)
Q Consensus        68 ~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~----------dg~i~vwd~~~~~~~~~~~~~~~~~  137 (685)
                      ++|.+.|.++.    +.+..+..-..+ ..+ ++|||+.++.+..          +..|.+||+.+.+...++..+... 
T Consensus        27 ~~v~ViD~~~~----~v~g~i~~G~~P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p-   99 (352)
T TIGR02658        27 TQVYTIDGEAG----RVLGMTDGGFLP-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGP-   99 (352)
T ss_pred             ceEEEEECCCC----EEEEEEEccCCC-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCc-
Confidence            78999988876    666555433333 345 9999998887765          788999999998887776421100 


Q ss_pred             HHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEE
Q 005656          138 RARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFA  217 (685)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  217 (685)
                                                                                  ..........++++|+|+++
T Consensus       100 ------------------------------------------------------------~~~~~~~~~~~~ls~dgk~l  119 (352)
T TIGR02658       100 ------------------------------------------------------------RFLVGTYPWMTSLTPDNKTL  119 (352)
T ss_pred             ------------------------------------------------------------hhhccCccceEEECCCCCEE
Confidence                                                                        00012334578999999999


Q ss_pred             EEEe-c-CCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCC-CceE-EE---e
Q 005656          218 VLGT-A-GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG-RDLK-SR---W  290 (685)
Q Consensus       218 ~~g~-~-dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~-~~---~  290 (685)
                      ++.. . +..|.++|+.+++....+..         .+...-...+.+. .++ -+.||......+.+ ++.. ..   +
T Consensus       120 ~V~n~~p~~~V~VvD~~~~kvv~ei~v---------p~~~~vy~t~e~~-~~~-~~~Dg~~~~v~~d~~g~~~~~~~~vf  188 (352)
T TIGR02658       120 LFYQFSPSPAVGVVDLEGKAFVRMMDV---------PDCYHIFPTANDT-FFM-HCRDGSLAKVGYGTKGNPKIKPTEVF  188 (352)
T ss_pred             EEecCCCCCEEEEEECCCCcEEEEEeC---------CCCcEEEEecCCc-cEE-EeecCceEEEEecCCCceEEeeeeee
Confidence            9876 4 68999999999998877642         1122222222222 221 22344444433321 1111 11   1


Q ss_pred             ec-CCce-eEEEEee-cCCEEEEEeCCCeEEEEEcCC-----CeeEEEEec-------CCCCeEEEEEcCCCCEEEEEe-
Q 005656          291 EV-GCSL-VKIVYHR-VNGLLATVADDLVIRLFDVVA-----LRMVRKFEG-------HTDRITDFCFSEDGKWLLSSG-  354 (685)
Q Consensus       291 ~~-~~~i-~~~~~~~-~~~~l~~~~~dg~I~i~d~~~-----~~~~~~~~~-------h~~~I~~l~~spdg~~l~s~s-  354 (685)
                      .. ..++ ..-.|.+ +|+++.+... |+|.+.|+..     .+.+..+..       ..+.+.-++++|+++.++.+. 
T Consensus       189 ~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~  267 (352)
T TIGR02658       189 HPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLAD  267 (352)
T ss_pred             cCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEec
Confidence            11 0000 0014455 7888877777 9999999643     333333221       223344599999999888743 


Q ss_pred             ---------CCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCC-eEEEEEeCCCeEEEEEcC
Q 005656          355 ---------MDGSLRIWDVILARQIDAIHVDVSITALSLSPNMD-VLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       355 ---------~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~-~Lat~~~d~~~I~lW~~~  407 (685)
                               ..+.|.++|..+++.+..+.....+..++++|||+ +|+++....+.|.+.|..
T Consensus       268 ~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~  330 (352)
T TIGR02658       268 QRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAE  330 (352)
T ss_pred             CCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECc
Confidence                     12579999999999999999988999999999999 888887655689999843

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.44  E-value=3e-11  Score=127.97  Aligned_cols=233  Identities=12%  Similarity=0.090  Sum_probs=147.1

Q ss_pred             cEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecC-CC--cEEEEEecCCCCCCceeEecccCCCCCeEEEEec
Q 005656           26 VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-DN--SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA  102 (685)
Q Consensus        26 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~-D~--~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~  102 (685)
                      .|.++|....... .+. .+...+.+..|+|||+.|+..+. ++  .|.+||+.++  ..+.+....   +......|+|
T Consensus       199 ~l~i~d~dG~~~~-~l~-~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg--~~~~lt~~~---g~~~~~~wSP  271 (448)
T PRK04792        199 QLMIADYDGYNEQ-MLL-RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQ--VREKVTSFP---GINGAPRFSP  271 (448)
T ss_pred             EEEEEeCCCCCce-Eee-cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCC--CeEEecCCC---CCcCCeeECC
Confidence            6777787665543 333 56778999999999998887654 33  4666666544  223333332   2345689999


Q ss_pred             CCCEEEE-EeCCCc--eEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCce
Q 005656          103 NGRHILS-AGQDRA--FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQ  179 (685)
Q Consensus       103 ~~~~l~s-~s~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (685)
                      ||+.|+. .+.+|.  |.+||+.+++.. .+.                                                
T Consensus       272 DG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt------------------------------------------------  302 (448)
T PRK04792        272 DGKKLALVLSKDGQPEIYVVDIATKALT-RIT------------------------------------------------  302 (448)
T ss_pred             CCCEEEEEEeCCCCeEEEEEECCCCCeE-ECc------------------------------------------------
Confidence            9998875 455665  555565444321 110                                                


Q ss_pred             EEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec-CC--cEEEEECCCCccccccccccccccCCCCcCEE
Q 005656          180 AYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA-GG--WIERFNLQSGISRGSYLDMSERSNYAHNGEVV  256 (685)
Q Consensus       180 ~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-dg--~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~  256 (685)
                                          .+.......+|+|+|++++..+. +|  .|+++|+.++......         .+.....
T Consensus       303 --------------------~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt---------~~g~~~~  353 (448)
T PRK04792        303 --------------------RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT---------FEGEQNL  353 (448)
T ss_pred             --------------------cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe---------cCCCCCc
Confidence                                12233456789999998877654 33  5777788777643321         1112234


Q ss_pred             EEEEcCCCCEEEEEEC-CC--eEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCC-C--eEEEEEcCCCeeEEE
Q 005656          257 GVACDSTNTLMISAGY-HG--DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD-L--VIRLFDVVALRMVRK  330 (685)
Q Consensus       257 ~l~~~~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~I~i~d~~~~~~~~~  330 (685)
                      ..+|+|+|++++..+. ++  .|.++|+.++..... ..........|+|+|+.|+..+.+ +  .+++++. +++..+.
T Consensus       354 ~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~l-t~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~  431 (448)
T PRK04792        354 GGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVL-TSTRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKAR  431 (448)
T ss_pred             CeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEc-cCCCCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEE
Confidence            5689999998877664 33  466678887765432 222222345799999987766543 3  4777786 5666677


Q ss_pred             EecCCCCeEEEEEcC
Q 005656          331 FEGHTDRITDFCFSE  345 (685)
Q Consensus       331 ~~~h~~~I~~l~~sp  345 (685)
                      +..+.+.+...+|||
T Consensus       432 l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        432 LPAGQGEVKSPAWSP  446 (448)
T ss_pred             CcCCCCCcCCCccCC
Confidence            776777788889987

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.43  E-value=2.9e-10  Score=118.85  Aligned_cols=301  Identities=13%  Similarity=0.098  Sum_probs=184.9

Q ss_pred             EEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCe
Q 005656           17 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPL   96 (685)
Q Consensus        17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~   96 (685)
                      .+++++.+|.|..+|..+|+.+.... .......+..  .++..++.++.++.+..+|..++.    .+..... ...+.
T Consensus        67 ~v~v~~~~g~v~a~d~~tG~~~W~~~-~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~----~~W~~~~-~~~~~  138 (377)
T TIGR03300        67 KVYAADADGTVVALDAETGKRLWRVD-LDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGK----ELWRAKL-SSEVL  138 (377)
T ss_pred             EEEEECCCCeEEEEEccCCcEeeeec-CCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCc----Eeeeecc-Cceee
Confidence            57778888999999999999877665 2222112222  246677788889999999887763    3322211 12221


Q ss_pred             EEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcC
Q 005656           97 CIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMD  176 (685)
Q Consensus        97 ~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (685)
                      +.-.. .+..++.++.+|.+..||..+++..........                                         
T Consensus       139 ~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~-----------------------------------------  176 (377)
T TIGR03300       139 SPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTP-----------------------------------------  176 (377)
T ss_pred             cCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCC-----------------------------------------
Confidence            11111 244677788899999999988875544321000                                         


Q ss_pred             CceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCC--cC
Q 005656          177 TAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHN--GE  254 (685)
Q Consensus       177 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~--~~  254 (685)
                                    .   .    ...... +..+  .+..++++..+|.+..+|..+|...........   .+..  ..
T Consensus       177 --------------~---~----~~~~~~-sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~---~g~~~~~~  229 (377)
T TIGR03300       177 --------------A---L----TLRGSA-SPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALP---KGRTELER  229 (377)
T ss_pred             --------------c---e----eecCCC-CCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccC---CCCCchhh
Confidence                          0   0    000000 0111  124678888889999999999876544321000   0000  00


Q ss_pred             ---E-EEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEE
Q 005656          255 ---V-VGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRK  330 (685)
Q Consensus       255 ---v-~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~  330 (685)
                         + ....+  .+..++.++.+|.++.||..+++.+....... ...  ....+..+++++.+|.++.+|..+++.+..
T Consensus       230 ~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~-~~~--p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~  304 (377)
T TIGR03300       230 LVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDASS-YQG--PAVDDNRLYVTDADGVVVALDRRSGSELWK  304 (377)
T ss_pred             hhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeeccCC-ccC--ceEeCCEEEEECCCCeEEEEECCCCcEEEc
Confidence               0 01111  24578888889999999999998877665332 111  223567888888999999999999988766


Q ss_pred             EecCCC-CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccc-e-EEEEEcCCCCeEEEEEeCCCeEEEE
Q 005656          331 FEGHTD-RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-I-TALSLSPNMDVLATAHVDQNGVYLW  404 (685)
Q Consensus       331 ~~~h~~-~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v-~~v~~spdg~~Lat~~~d~~~I~lW  404 (685)
                      ...... .......  .+..|++++.+|.|+++|..+|+.+..+..+.. + .+..+. + ..|++++.|| .|+.|
T Consensus       305 ~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG-~l~~~  376 (377)
T TIGR03300       305 NDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDG-DLYAF  376 (377)
T ss_pred             cccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCc-eEEEe
Confidence            532211 1222222  466889999999999999999999988876553 2 222332 3 3477777787 77765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.42  E-value=6.5e-11  Score=126.68  Aligned_cols=107  Identities=26%  Similarity=0.391  Sum_probs=90.0

Q ss_pred             EccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecc
Q 005656           10 FSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS   89 (685)
Q Consensus        10 fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~   89 (685)
                      ++++.- ++++|+.-|.|.+|+....+....+. +|.+.|.++.|+-||+++++.|.|.++|+|++++.....   ...-
T Consensus       141 ~s~~~~-~i~~gsv~~~iivW~~~~dn~p~~l~-GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~---~~~f  215 (967)
T KOG0974|consen  141 DSAEEL-YIASGSVFGEIIVWKPHEDNKPIRLK-GHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG---CTGF  215 (967)
T ss_pred             ccCcEE-EEEeccccccEEEEeccccCCcceec-ccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC---cccc
Confidence            455544 88899999999999988444333455 999999999999999999999999999999999874322   3556


Q ss_pred             cCCCCCeEEEEecCCCEEEEEeCCCceEEEEeec
Q 005656           90 GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ  123 (685)
Q Consensus        90 ~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~  123 (685)
                      +|++.|+.+.|.|+  .+++++.|.+.++|+...
T Consensus       216 gHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~  247 (967)
T KOG0974|consen  216 GHSARVWACCFLPN--RIITVGEDCTCRVWGVNG  247 (967)
T ss_pred             cccceeEEEEeccc--eeEEeccceEEEEEeccc
Confidence            99999999999998  999999999999996543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.42  E-value=7.5e-10  Score=108.38  Aligned_cols=375  Identities=12%  Similarity=0.092  Sum_probs=214.3

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEE-----ecCCCcEEEEEecCCCCCCceeEec
Q 005656           14 GQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS-----ASADNSIKMWIFDTTDGDPRLLRFR   88 (685)
Q Consensus        14 g~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s-----~s~D~~v~iWd~~~~~~~~~~~~~~   88 (685)
                      |..++.+++.|  +..+++.+++..+..  .|-+-|+...|+|+|+.+|-     ++.-.+.-+|-++..++..+.+..+
T Consensus        50 GD~IiFt~~Dd--lWe~slk~g~~~rit--S~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRiTyf  125 (668)
T COG4946          50 GDRIIFTCCDD--LWEYSLKDGKPLRIT--SGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRITYF  125 (668)
T ss_pred             CcEEEEEechH--HHHhhhccCCeeEEe--cccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEEEEe
Confidence            55467776643  566677888777665  58889999999999997776     3444455566666666666666666


Q ss_pred             ccCCCCCeE-EEEecCCCEEEEEeCCCceE----EEEeecCce-eeEechhhHHH---HHhhccccc-------------
Q 005656           89 SGHSAPPLC-IRFYANGRHILSAGQDRAFR----LFSVIQDQQ-SRELSQRHVAK---RARKLKMKE-------------  146 (685)
Q Consensus        89 ~~h~~~v~~-i~~~~~~~~l~s~s~dg~i~----vwd~~~~~~-~~~~~~~~~~~---~~~~~~~~~-------------  146 (685)
                       |  .+-+. .-|.|||+.+++...-.-..    +|.+..+.. ...+..+....   .........             
T Consensus       126 -G--r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e~LnlGpathiv~~dg~ivigRntydLP~WK~YkG  202 (668)
T COG4946         126 -G--RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTEPLNLGPATHIVIKDGIIVIGRNTYDLPHWKGYKG  202 (668)
T ss_pred             -c--cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceeeeccCCceeeEEEeCCEEEEccCcccCcccccccC
Confidence             3  23333 45899999888765433222    233322211 11110000000   000000000             


Q ss_pred             -----------cccccCceeeeeccc---ccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEcc
Q 005656          147 -----------EELKLKPVIAFDCAE---IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA  212 (685)
Q Consensus       147 -----------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  212 (685)
                                 ....+..++.+....   .-..+-...++-+.+-+.++.-++....+.++.-      -..-.+-..+.
T Consensus       203 GtrGklWis~d~g~tFeK~vdl~~~vS~PmIV~~RvYFlsD~eG~GnlYSvdldGkDlrrHTn------FtdYY~R~~ns  276 (668)
T COG4946         203 GTRGKLWISSDGGKTFEKFVDLDGNVSSPMIVGERVYFLSDHEGVGNLYSVDLDGKDLRRHTN------FTDYYPRNANS  276 (668)
T ss_pred             CccceEEEEecCCcceeeeeecCCCcCCceEEcceEEEEecccCccceEEeccCCchhhhcCC------chhccccccCC
Confidence                       000011111111000   0001111122333444444444444444433321      01122233456


Q ss_pred             CCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEE---EE-EcC-CCCEEEEEECCCeEEEEECCCCceE
Q 005656          213 CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVG---VA-CDS-TNTLMISAGYHGDIKVWDFKGRDLK  287 (685)
Q Consensus       213 ~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~---l~-~~~-~~~~l~s~s~dg~i~iwd~~~~~~~  287 (685)
                      ||+.++. ...|.|++||..+......-...+..........+.-   +. |++ +|.+++..|. |...+.+...+-.+
T Consensus       277 DGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~i  354 (668)
T COG4946         277 DGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGYSI  354 (668)
T ss_pred             CCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCeeE
Confidence            7777766 3568899999887654332221111000000011111   11 222 5677877775 67777765544333


Q ss_pred             EEeecCCceeEEEEeecCCEEEEEeCCC-eEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005656          288 SRWEVGCSLVKIVYHRVNGLLATVADDL-VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL  366 (685)
Q Consensus       288 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~  366 (685)
                       .+.....|.-..+..+++-++.|..|| .+-|||..+++. ..+...-+.|-++..+|||++++.+.....+-+.|+.+
T Consensus       355 -qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididn  432 (668)
T COG4946         355 -QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDN  432 (668)
T ss_pred             -EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecC
Confidence             344556688888888888999999999 999999998874 45666778899999999999999999889999999999


Q ss_pred             CceeeEEeeccc-eEEEEEcCCCCeEEEEEeCC---CeEEEEE
Q 005656          367 ARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQ---NGVYLWV  405 (685)
Q Consensus       367 ~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~---~~I~lW~  405 (685)
                      |.....=+.... |+.++|||+++++|-+--+|   ..|++++
T Consensus       433 gnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklyd  475 (668)
T COG4946         433 GNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYD  475 (668)
T ss_pred             CCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEe
Confidence            976544444444 99999999999999987654   2577775

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=1.6e-10  Score=121.45  Aligned_cols=242  Identities=12%  Similarity=0.028  Sum_probs=149.9

Q ss_pred             CcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcE---EEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEe
Q 005656           25 GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPV---LMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY  101 (685)
Q Consensus        25 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~---l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~  101 (685)
                      +.|.+.|...+......  .....+.+-+|+|||+.   +++...++.-.||-.+...+..+.+..+.+   .....+|+
T Consensus       165 ~~l~~~d~dG~~~~~lt--~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g---~~~~p~wS  239 (428)
T PRK01029        165 GELWSVDYDGQNLRPLT--QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQG---NQLMPTFS  239 (428)
T ss_pred             ceEEEEcCCCCCceEcc--cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCC---CccceEEC
Confidence            46888888776554433  34556788899999974   235555565556655554444455554433   34567999


Q ss_pred             cCCCEEEEEeC-CCc----eEEEEeecCc--eeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEE
Q 005656          102 ANGRHILSAGQ-DRA----FRLFSVIQDQ--QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH  174 (685)
Q Consensus       102 ~~~~~l~s~s~-dg~----i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (685)
                      |||+.|+..+. +|.    +..|++..+.  ....+                                            
T Consensus       240 PDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~l--------------------------------------------  275 (428)
T PRK01029        240 PRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRL--------------------------------------------  275 (428)
T ss_pred             CCCCEEEEEECCCCCcceeEEEeecccCCCCcceEe--------------------------------------------
Confidence            99998887653 232    2224433210  00000                                            


Q ss_pred             cCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe-cCCc--EEEEECCC-CccccccccccccccCC
Q 005656          175 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-AGGW--IERFNLQS-GISRGSYLDMSERSNYA  250 (685)
Q Consensus       175 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~dg~--i~~~d~~~-~~~~~~~~~~~~~~~~~  250 (685)
                                          ..   .........+|+|||+.++..+ .+|.  |+++++.. +.....+.        .
T Consensus       276 --------------------t~---~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt--------~  324 (428)
T PRK01029        276 --------------------LN---EAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT--------K  324 (428)
T ss_pred             --------------------ec---CCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec--------c
Confidence                                00   1112334679999999888765 4564  44445532 22122111        3


Q ss_pred             CCcCEEEEEEcCCCCEEEEEECC---CeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeC---CCeEEEEEcCC
Q 005656          251 HNGEVVGVACDSTNTLMISAGYH---GDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVAD---DLVIRLFDVVA  324 (685)
Q Consensus       251 h~~~v~~l~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~I~i~d~~~  324 (685)
                      +...+....|+|+|+.|+..+.+   ..|.+||+.+++..........+....|+|||+.|+....   ...|+++|+.+
T Consensus       325 ~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~  404 (428)
T PRK01029        325 KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLIT  404 (428)
T ss_pred             CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence            34566788999999988877643   4699999998877654444456678999999997775543   35789999988


Q ss_pred             CeeEEEEecCCCCeEEEEEcCCC
Q 005656          325 LRMVRKFEGHTDRITDFCFSEDG  347 (685)
Q Consensus       325 ~~~~~~~~~h~~~I~~l~~spdg  347 (685)
                      ++..... ...+.+...+|+|-.
T Consensus       405 g~~~~Lt-~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        405 KKTRKIV-IGSGEKRFPSWGAFP  426 (428)
T ss_pred             CCEEEee-cCCCcccCceecCCC
Confidence            7754443 345567788898853

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=1.5e-10  Score=121.63  Aligned_cols=176  Identities=11%  Similarity=0.037  Sum_probs=113.8

Q ss_pred             eEEEEEccCCCEEEEEec-CC--cE--EEEECCCCc--cccccccccccccCCCCcCEEEEEEcCCCCEEEEEE-CCCeE
Q 005656          205 VKACTISACGNFAVLGTA-GG--WI--ERFNLQSGI--SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDI  276 (685)
Q Consensus       205 v~~~~~s~~g~~l~~g~~-dg--~i--~~~d~~~~~--~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i  276 (685)
                      .....|||||+.|+.... +|  .+  ..|++..+.  ....+.       ..+.+.....+|+|+|+.|+..+ .+|..
T Consensus       233 ~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt-------~~~~~~~~~p~wSPDG~~Laf~s~~~g~~  305 (428)
T PRK01029        233 QLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLL-------NEAFGTQGNPSFSPDGTRLVFVSNKDGRP  305 (428)
T ss_pred             ccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEee-------cCCCCCcCCeEECCCCCEEEEEECCCCCc
Confidence            445789999998887653 23  33  346766531  111111       02223345789999999887765 46654


Q ss_pred             EEE--ECCC-CceEEEee-cCCceeEEEEeecCCEEEEEeCC---CeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCE
Q 005656          277 KVW--DFKG-RDLKSRWE-VGCSLVKIVYHRVNGLLATVADD---LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKW  349 (685)
Q Consensus       277 ~iw--d~~~-~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d---g~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~  349 (685)
                      .+|  ++.. +.....+. ....+....|+|||+.|+..+.+   ..|++||+.+++... +......+....|+|||++
T Consensus       306 ~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~  384 (428)
T PRK01029        306 RIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLH  384 (428)
T ss_pred             eEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCE
Confidence            455  4432 22223332 23566788999999988876543   479999999887643 4333445778999999998


Q ss_pred             EEEEeC---CCcEEEEEcCCCceeeEEeeccceEEEEEcCCC
Q 005656          350 LLSSGM---DGSLRIWDVILARQIDAIHVDVSITALSLSPNM  388 (685)
Q Consensus       350 l~s~s~---Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg  388 (685)
                      |+..+.   .+.|++||+.+++..........+...+|+|-.
T Consensus       385 L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        385 LVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             EEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecCCC
Confidence            875442   356889999888766555555557788888754

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.40  E-value=1.8e-11  Score=114.93  Aligned_cols=254  Identities=16%  Similarity=0.256  Sum_probs=191.1

Q ss_pred             CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCce-eeEechhhHHHHHhhccccccccccCceeeeec
Q 005656           81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ-SRELSQRHVAKRARKLKMKEEELKLKPVIAFDC  159 (685)
Q Consensus        81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (685)
                      ++.+++.+.||...|+....-|...-+++.+.|.++|+|--++..+ -..+                             
T Consensus        13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI-----------------------------   63 (404)
T KOG1409|consen   13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSI-----------------------------   63 (404)
T ss_pred             chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchh-----------------------------
Confidence            3466777889999999999989888899999999999995433211 0000                             


Q ss_pred             ccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccc
Q 005656          160 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGS  239 (685)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~  239 (685)
                                                            ....+.+++++.+.+....|++|-.+|.+.-+.+...-....
T Consensus        64 --------------------------------------~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~  105 (404)
T KOG1409|consen   64 --------------------------------------YHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMT  105 (404)
T ss_pred             --------------------------------------hhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcc
Confidence                                                  014577899999999999999999999999987654322222


Q ss_pred             cccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEE
Q 005656          240 YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRL  319 (685)
Q Consensus       240 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i  319 (685)
                      +.    +....|...|..+.|+-...++++.+.|..+.---.+.+..+..+......+++.+.-.  +..+|...|.|.+
T Consensus       106 ~~----r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~  179 (404)
T KOG1409|consen  106 FL----KDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFVGDHSGQITM  179 (404)
T ss_pred             hh----hhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEEecccccceEE
Confidence            21    12338999999999999999999999998876666666665554444333333333332  5666766777766


Q ss_pred             EEc--CCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcee--eEEeeccceEEEEEcCCCCeEEEEE
Q 005656          320 FDV--VALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI--DAIHVDVSITALSLSPNMDVLATAH  395 (685)
Q Consensus       320 ~d~--~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i--~~~~~~~~v~~v~~spdg~~Lat~~  395 (685)
                      ..+  ..-.++.++.+|.+.+++++|.|..+.|.+|..|..|.+||+.-.+-+  ....+...|..+...+--+.|.+++
T Consensus       180 lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~  259 (404)
T KOG1409|consen  180 LKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCG  259 (404)
T ss_pred             EEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeecc
Confidence            554  345778899999999999999999999999999999999999765443  3333455599999999999999999


Q ss_pred             eCCCeEEEEEcCC
Q 005656          396 VDQNGVYLWVNRC  408 (685)
Q Consensus       396 ~d~~~I~lW~~~~  408 (685)
                      .|| .|.+|+.+.
T Consensus       260 edg-~i~~w~mn~  271 (404)
T KOG1409|consen  260 EDG-GIVVWNMNV  271 (404)
T ss_pred             CCC-eEEEEeccc
Confidence            998 899998654

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.40  E-value=8.9e-12  Score=133.13  Aligned_cols=273  Identities=12%  Similarity=0.165  Sum_probs=185.9

Q ss_pred             CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCC------CcEEEEecCCCcEEEEEec
Q 005656            3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN------EPVLMSASADNSIKMWIFD   76 (685)
Q Consensus         3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~------~~~l~s~s~D~~v~iWd~~   76 (685)
                      +++++..+-.  + +|..| +.-.|.+||+.++.++..+...|.-.+.    .+.      +.+++++..-..+..=..+
T Consensus         8 ~~l~~~~~~~--~-~llag-~gp~i~~yd~~s~~li~~~~~~~~~~~H----~~e~~~~l~~~~~v~~~~~~~v~~~~~~   79 (967)
T KOG0974|consen    8 GPLNLPQLVS--D-YLLAG-SGPEILVYDLSSGCLIRHLIQSKILEVH----RGEGKVKLLSGKIVTCAKSDEVYVKEAS   79 (967)
T ss_pred             ccccchhhcc--c-eeeec-CCCceEEeeCCchhHhhhhhhhcccccc----cccccceeccceEEEEEeecceeecchh
Confidence            4455555544  3 44443 3567999999998776555422222222    121      2345555443333322111


Q ss_pred             CCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceee
Q 005656           77 TTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA  156 (685)
Q Consensus        77 ~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (685)
                      .     ....   .-...+....+.-+.+.++.++.+..+.+||...+..........                      
T Consensus        80 ~-----~~~~---~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~e----------------------  129 (967)
T KOG0974|consen   80 N-----QIIE---RFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDE----------------------  129 (967)
T ss_pred             h-----hhhh---hccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCc----------------------
Confidence            1     1111   122334445555567788999999999999986654433221100                      


Q ss_pred             eecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcc
Q 005656          157 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS  236 (685)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~  236 (685)
                                                          .      ..-....-+-.+++.-++++|+.-|.|.+|+......
T Consensus       130 ------------------------------------r------~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~  167 (967)
T KOG0974|consen  130 ------------------------------------R------CTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK  167 (967)
T ss_pred             ------------------------------------e------EEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC
Confidence                                                0      0001122334566778899999999999999872222


Q ss_pred             ccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEE--EeecCCceeEEEEeecCCEEEEEeCC
Q 005656          237 RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS--RWEVGCSLVKIVYHRVNGLLATVADD  314 (685)
Q Consensus       237 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d  314 (685)
                      ..        ...+|.+.|..+.++.+|+++++.|.|.++++|++.+.+...  -+.|.+.+..++++|+  .+++++.|
T Consensus       168 p~--------~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~ged  237 (967)
T KOG0974|consen  168 PI--------RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGED  237 (967)
T ss_pred             cc--------eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccc
Confidence            21        223999999999999999999999999999999999887654  5667799999999997  99999999


Q ss_pred             CeEEEEEcCCCeeEEEEecCCC-CeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005656          315 LVIRLFDVVALRMVRKFEGHTD-RITDFCFSEDGKWLLSSGMDGSLRIWDVIL  366 (685)
Q Consensus       315 g~I~i~d~~~~~~~~~~~~h~~-~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~  366 (685)
                      .+.++|+.. ++.+..+.+|.+ .|..++..++..+++|++.||.+++|++..
T Consensus       238 ctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  238 CTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             eEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            999999765 444557888865 489999999999999999999999999754

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.39  E-value=3.1e-11  Score=121.67  Aligned_cols=188  Identities=14%  Similarity=0.285  Sum_probs=155.9

Q ss_pred             cCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEE------cC--------------CCCEEEEEE
Q 005656          212 ACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC------DS--------------TNTLMISAG  271 (685)
Q Consensus       212 ~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~------~~--------------~~~~l~s~s  271 (685)
                      |.+.+++..+.||.+++|+...++....|.+..     .-++..++..|      +|              +...++-|.
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~-----~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt   77 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIA-----SLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT   77 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccch-----hccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec
Confidence            456789999999999999999998887775321     12233334333      11              334677788


Q ss_pred             CCCeEEEEECCCCceEEEeec---CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCC
Q 005656          272 YHGDIKVWDFKGRDLKSRWEV---GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK  348 (685)
Q Consensus       272 ~dg~i~iwd~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~  348 (685)
                      ..|.|.+|+...+++...+..   .+++.++.++.+-..|.+++.|+.+..|+....+.++.+.+....+.+++.+|||.
T Consensus        78 ~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~  157 (541)
T KOG4547|consen   78 PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK  157 (541)
T ss_pred             CCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC
Confidence            899999999999999888873   48899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCcEEEEEcCCCceeeEEeeccc-eEEEEEcCC-----CCeEEEEEeCCCeEEEEEc
Q 005656          349 WLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPN-----MDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       349 ~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spd-----g~~Lat~~~d~~~I~lW~~  406 (685)
                      .|++|+  ++|++||+.+++.+..|.+|.. |++++|..+     |.++.++..-...|.+|-.
T Consensus       158 ~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v  219 (541)
T KOG4547|consen  158 ILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVV  219 (541)
T ss_pred             EEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEE
Confidence            999997  6899999999999999998766 999999887     7777776655558899964

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.38  E-value=6.2e-11  Score=121.13  Aligned_cols=277  Identities=12%  Similarity=0.185  Sum_probs=198.5

Q ss_pred             CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe---------------eeEEeecccccCeeEEEEeCCCcEEEEecCC
Q 005656            3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRR---------------LQSVIREAHDNAIISLHFFANEPVLMSASAD   67 (685)
Q Consensus         3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~---------------~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D   67 (685)
                      ....|++|+.... ++|+|+.||.++|-.+.+..               .-+++. ||.+.|.-+.|+.+.+.|-|+..+
T Consensus        15 vkL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLe-GH~~sV~vvTWNe~~QKLTtSDt~   92 (1189)
T KOG2041|consen   15 VKLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLE-GHNASVMVVTWNENNQKLTTSDTS   92 (1189)
T ss_pred             ceEEEEEEcccCC-eEEeccccceeEEEEccccCCcccccccccccccchhhhhc-cCcceEEEEEeccccccccccCCC
Confidence            4578999999877 99999999999999776421               123444 999999999999999999999999


Q ss_pred             CcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccccc
Q 005656           68 NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEE  147 (685)
Q Consensus        68 ~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (685)
                      |-|.+|-+-.++.-...  .-......|.+++|..||..+...-.||.|.+=+++.++.                     
T Consensus        93 GlIiVWmlykgsW~EEM--iNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRI---------------------  149 (1189)
T KOG2041|consen   93 GLIIVWMLYKGSWCEEM--INNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRI---------------------  149 (1189)
T ss_pred             ceEEEEeeecccHHHHH--hhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecccee---------------------
Confidence            99999987665321111  1233566789999999999999999999998877654421                     


Q ss_pred             ccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEE
Q 005656          148 ELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIE  227 (685)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~  227 (685)
                                                         |...             -.......+.|++|...++.+-.+|.+.
T Consensus       150 -----------------------------------wgKe-------------Lkg~~l~hv~ws~D~~~~Lf~~ange~h  181 (1189)
T KOG2041|consen  150 -----------------------------------WGKE-------------LKGQLLAHVLWSEDLEQALFKKANGETH  181 (1189)
T ss_pred             -----------------------------------cchh-------------cchheccceeecccHHHHHhhhcCCcEE
Confidence                                               1110             1122345788999999999999999999


Q ss_pred             EEECCCCccccccccccc---cccCCCCcCEEEEEEc--------CCCCEEEEEECCCeEEEEECCCCceEEEeecCCce
Q 005656          228 RFNLQSGISRGSYLDMSE---RSNYAHNGEVVGVACD--------STNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSL  296 (685)
Q Consensus       228 ~~d~~~~~~~~~~~~~~~---~~~~~h~~~v~~l~~~--------~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i  296 (685)
                      +||.+..-.+..-..-..   .........|..+.|.        |+...++.+-..|.+.+-.-.+......+..+-.+
T Consensus       182 lydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~  261 (1189)
T KOG2041|consen  182 LYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKI  261 (1189)
T ss_pred             EecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEe
Confidence            999876533221110000   0000111225555553        46678999999999988876655555556666788


Q ss_pred             eEEEEeecCCEEEEEeCCC---------eEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE
Q 005656          297 VKIVYHRVNGLLATVADDL---------VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS  353 (685)
Q Consensus       297 ~~~~~~~~~~~l~~~~~dg---------~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~  353 (685)
                      ....|+++|..||+++.+.         .|.+|. .-|+.+.+++.....|++++|-..|-.++.+
T Consensus       262 vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~A  326 (1189)
T KOG2041|consen  262 VGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAIA  326 (1189)
T ss_pred             ecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEEEE
Confidence            9999999999999998642         455554 3478888898888889999997766555443

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.37  E-value=2.6e-11  Score=125.06  Aligned_cols=394  Identities=14%  Similarity=0.140  Sum_probs=231.4

Q ss_pred             CCCcEEEEEEccC-----------CCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCC---C-cEEEEec
Q 005656            1 MRGAVTALAFSSD-----------GQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN---E-PVLMSAS   65 (685)
Q Consensus         1 h~~~V~~l~fspd-----------g~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~---~-~~l~s~s   65 (685)
                      |+..|+.+.|.|-           ...+||++...|.|.+||...+..+..+. .|.++|..++|-+.   . ..|+.-.
T Consensus        54 h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~-~~~~~~qdl~W~~~rd~Srd~LlaIh  132 (1062)
T KOG1912|consen   54 HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLS-HSNDSVQDLCWVPARDDSRDVLLAIH  132 (1062)
T ss_pred             CccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhc-CCCcchhheeeeeccCcchheeEEec
Confidence            6788999999873           23478888999999999999999888887 89999999999873   3 3677777


Q ss_pred             CCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEec-CCCEEEEEeCCCceEEEEeecCcee------eEechhhHH--
Q 005656           66 ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQS------RELSQRHVA--  136 (685)
Q Consensus        66 ~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~------~~~~~~~~~--  136 (685)
                      ..+++.+|+.++++    .+...........|+.+.| |.+++..-+..|.+.+-+.......      ..+...+..  
T Consensus       133 ~ss~lvLwntdtG~----k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~  208 (1062)
T KOG1912|consen  133 GSSTLVLWNTDTGE----KFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLA  208 (1062)
T ss_pred             CCcEEEEEEccCCc----eeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchh
Confidence            77899999998884    3333233344566688877 4566666666666666554322111      111111000  


Q ss_pred             HHHhhccccccccccCce---eeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccC
Q 005656          137 KRARKLKMKEEELKLKPV---IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC  213 (685)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  213 (685)
                      .-..........-..++-   ..+.....-.+.|.+++..... ..+.++|++-...-..+  +  -..+.+.-+.+-|+
T Consensus       209 ~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~p-rellv~dle~~~~l~vv--p--ier~~akfv~vlP~  283 (1062)
T KOG1912|consen  209 HLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFP-RELLVFDLEYECCLAVV--P--IERGGAKFVDVLPD  283 (1062)
T ss_pred             hhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEec-cceEEEcchhhceeEEE--E--eccCCcceeEeccC
Confidence            000000000000000110   0011111223456666655444 34555665532221111  1  22344556666665


Q ss_pred             C--CEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEE-----------EEEcCC-CCEEEEEECCCeEEEE
Q 005656          214 G--NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVG-----------VACDST-NTLMISAGYHGDIKVW  279 (685)
Q Consensus       214 g--~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~-----------l~~~~~-~~~l~s~s~dg~i~iw  279 (685)
                      +  ..++++..||.+.+|--+......+........  .-...+.+           ....|. ...++.--.+|.+.+|
T Consensus       284 ~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~--dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w  361 (1062)
T KOG1912|consen  284 PRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSM--DLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFW  361 (1062)
T ss_pred             CCcceEEEEecCCeEEEEEeeccCccccccchhhcc--ccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHH
Confidence            5  679999999999999765422211111000000  00111111           122233 2223333346777888


Q ss_pred             ECCCCceEEEe--------------------------------ecCCceeEEEEee-----------cC-------CEEE
Q 005656          280 DFKGRDLKSRW--------------------------------EVGCSLVKIVYHR-----------VN-------GLLA  309 (685)
Q Consensus       280 d~~~~~~~~~~--------------------------------~~~~~i~~~~~~~-----------~~-------~~l~  309 (685)
                      .+.+++.....                                .+....++...+|           .+       .++|
T Consensus       362 ~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvA  441 (1062)
T KOG1912|consen  362 QLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVA  441 (1062)
T ss_pred             hhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEE
Confidence            87754321100                                0112222222221           12       2789


Q ss_pred             EEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE---------eCCCcEEEEEcCCCceeeEE--e--ec
Q 005656          310 TVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS---------GMDGSLRIWDVILARQIDAI--H--VD  376 (685)
Q Consensus       310 ~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~---------s~Dg~I~iwd~~~~~~i~~~--~--~~  376 (685)
                      +|...|+|.++|+.++...+.+..|.+.|.++.|-...+++-.+         +.-+.+.+-|+++|.-...-  .  ..
T Consensus       442 vGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~de  521 (1062)
T KOG1912|consen  442 VGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDE  521 (1062)
T ss_pred             eecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCc
Confidence            99999999999999999999999999999999997766544322         22245788899998654332  2  34


Q ss_pred             cceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          377 VSITALSLSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       377 ~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                      ++|+.+..|..|+||+..-.+. -+.+|+.+
T Consensus       522 spI~~irvS~~~~yLai~Fr~~-plEiwd~k  551 (1062)
T KOG1912|consen  522 SPIRAIRVSSSGRYLAILFRRE-PLEIWDLK  551 (1062)
T ss_pred             CcceeeeecccCceEEEEeccc-chHHHhhc
Confidence            5699999999999999999997 89999874

>PF04003 Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]

Probab=99.35  E-value=4.2e-12  Score=106.24  Aligned_cols=105  Identities=19%  Similarity=0.350  Sum_probs=98.8

Q ss_pred             CChHHHHHHHhcCCcchhhhhhccCCCCCCCCcccccCcccHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHhhcc
Q 005656          563 KNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEIS--CRNNFEFIQAVIRLFLKIHGE  640 (685)
Q Consensus       563 ~~~~~~~~~l~~~~~s~id~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~--~~~~~e~~~~~l~~~l~~h~~  640 (685)
                      ||...+.+++.+.+++.|+..+++|+               ..++..||++|..+++  ...+.|++..|+..+|+.||.
T Consensus         1 Nd~~ll~~vl~~~~~~~I~~tv~~Lp---------------~~~~~~LL~~l~~~l~~~~~~~~e~~l~Wl~~ll~~H~~   65 (110)
T PF04003_consen    1 NDEELLLEVLERIPPSDIENTVRSLP---------------FSYAERLLQFLSERLQTRKSPHVEFLLRWLKALLKTHGS   65 (110)
T ss_pred             CHHHHHHHHHhhCCHHHHHHHHHhCC---------------HHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHH
Confidence            57789999999999999999999995               4789999999999887  448999999999999999999


Q ss_pred             ccccc-hHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhccc
Q 005656          641 TVRCH-TKLQDKARKLLEVQSAVWQKIDKMFQSARCVVSFLSN  682 (685)
Q Consensus       641 ~l~~~-~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  682 (685)
                      +|++. +++++.|..|++.++...+.++++++.|.+.|+|+.+
T Consensus        66 ~l~~~~~~~~~~L~~L~~~l~~~~~~l~~l~~~n~~~L~~l~~  108 (110)
T PF04003_consen   66 YLSSSSPELRPVLRSLQKILRERLQNLSKLLDLNLGRLDYLLS  108 (110)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            99999 9999999999999999999999999999999999864

This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This domain is found at the C terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein. In yeast, these proteins are called Utp5, Utp1 or Pwp2, Utp12 or DIP2 Q12220 from SWISSPROT. They interact with snoRNA U3 and with MPP10 []. Pwp2 is an essential Saccharomyces cerevisiae (Baker's yeast) protein involved in cell separation.

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.33  E-value=1.5e-08  Score=115.14  Aligned_cols=359  Identities=11%  Similarity=0.147  Sum_probs=207.1

Q ss_pred             cEEEEEEccCCCCEEEEEe-CCC--cEEEEeCCCCe---eeEEee----cccccCeeEEEEeCCCcEEEEecCCCcEEEE
Q 005656            4 AVTALAFSSDGQPLLASGA-SSG--VISIWNLEKRR---LQSVIR----EAHDNAIISLHFFANEPVLMSASADNSIKMW   73 (685)
Q Consensus         4 ~V~~l~fspdg~~~latg~-~dg--~I~vwd~~~~~---~~~~~~----~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iW   73 (685)
                      .++..+|.+....++++.+ ...  .|.+.......   .+..+.    ....+.|.++.|.++...++.+..+|.|.+.
T Consensus        23 ~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~  102 (928)
T PF04762_consen   23 PITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIILV  102 (928)
T ss_pred             ccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEEE
Confidence            4667778776653433333 222  23333332222   222221    1234689999999999988888899999888


Q ss_pred             EecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCc
Q 005656           74 IFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKP  153 (685)
Q Consensus        74 d~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (685)
                      ..+.... ...+.....-...|.+++||||+..|+.++.+|++.+.+ .+.....+......            ..+.  
T Consensus       103 ~~~~~~~-~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~fd~i~E~~l~~~------------~~~~--  166 (928)
T PF04762_consen  103 REDPDPD-EDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT-RDFDPISEVPLDSD------------DFGE--  166 (928)
T ss_pred             EccCCCC-CceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccceEEEEeecCcc------------ccCC--
Confidence            3332111 122223334567899999999999999999999988774 23332222211000            0000  


Q ss_pred             eeeeecccccccCCcceEEEEcCCceEEEE---------EcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec--
Q 005656          154 VIAFDCAEIRERDWCNVVTCHMDTAQAYVW---------RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA--  222 (685)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w---------~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~--  222 (685)
                                    ...++++-++..-..-         ........+.-..... ....-..++|-.||.|+++.+-  
T Consensus       167 --------------~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~  231 (928)
T PF04762_consen  167 --------------SKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEP  231 (928)
T ss_pred             --------------CceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEc
Confidence                          0011111110000000         0000000000000111 3446778999999999999875  


Q ss_pred             -C---CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC---CCeEEEEECCCCceEEEeec---
Q 005656          223 -G---GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY---HGDIKVWDFKGRDLKSRWEV---  292 (685)
Q Consensus       223 -d---g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~---  292 (685)
                       .   ..+++|+-. |.....-.        .-.+--.+++|-|.|.+|++...   ...|.+|.-+ |-....+..   
T Consensus       232 ~~~~~R~iRVy~Re-G~L~stSE--------~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~  301 (928)
T PF04762_consen  232 ETGSRRVIRVYSRE-GELQSTSE--------PVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFD  301 (928)
T ss_pred             CCCceeEEEEECCC-ceEEeccc--------cCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCC
Confidence             3   468888865 43332221        22233456899999999988764   3456777643 333333332   


Q ss_pred             --CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeE--EEEe-cCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEc--
Q 005656          293 --GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMV--RKFE-GHTDRITDFCFSEDG-KWLLSSGMDGSLRIWDV--  364 (685)
Q Consensus       293 --~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~--~~~~-~h~~~I~~l~~spdg-~~l~s~s~Dg~I~iwd~--  364 (685)
                        ...+..+.|++++..||+...|. |.+|-..+..-.  +.+. .....+..+.|+|.. ..|...+.+|.+..+++  
T Consensus       302 ~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~  380 (928)
T PF04762_consen  302 PEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAW  380 (928)
T ss_pred             CCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEE
Confidence              36789999999999999988665 999998876422  2222 123345568999843 45666666566655443  


Q ss_pred             --CCCc--------ee------------------------eEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656          365 --ILAR--------QI------------------------DAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       365 --~~~~--------~i------------------------~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~  405 (685)
                        ..+.        .+                        ..+..+.+|.+++|++++..+|+-..|+ .|.+|.
T Consensus       381 ~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~-~l~~~~  454 (928)
T PF04762_consen  381 DVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDG-SLSIYE  454 (928)
T ss_pred             EEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCC-CEEEEE
Confidence              1110        11                        2233466799999999998888888887 788876

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.33  E-value=2.2e-12  Score=134.49  Aligned_cols=270  Identities=16%  Similarity=0.188  Sum_probs=195.7

Q ss_pred             eeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCC--
Q 005656           37 LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR--  114 (685)
Q Consensus        37 ~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg--  114 (685)
                      ....++ .|+...+|++|+-+.+.|+.|+..|.|+++++.++    .......+|..+|+.+.-+.+|..+++.+.-.  
T Consensus      1093 ~w~~fr-d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG----~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1093 SWRSFR-DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG----SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred             cchhhh-ccccceeeEEeecCCceEEeeeccceEEEEEccCc----cccccccccccccccccccCCcceeeeeccccCc
Confidence            345555 78899999999999999999999999999999988    45556689999999999999998877665433  


Q ss_pred             ceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCcee
Q 005656          115 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI  194 (685)
Q Consensus       115 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  194 (685)
                      -..+|++..--..                                                                .  
T Consensus      1168 lsaLW~~~s~~~~----------------------------------------------------------------~-- 1181 (1516)
T KOG1832|consen 1168 LSALWDASSTGGP----------------------------------------------------------------R-- 1181 (1516)
T ss_pred             hHHHhccccccCc----------------------------------------------------------------c--
Confidence            3567776431100                                                                0  


Q ss_pred             ecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCC
Q 005656          195 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG  274 (685)
Q Consensus       195 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg  274 (685)
                           ..-..-.++.|+..-.+-++|+......+||++++....++.....    +.+-.-++..|+|+..+++   .||
T Consensus      1182 -----Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~----~~~y~~n~a~FsP~D~LIl---ndG 1249 (1516)
T KOG1832|consen 1182 -----HSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTV----TSSYSNNLAHFSPCDTLIL---NDG 1249 (1516)
T ss_pred             -----ccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcch----hhhhhccccccCCCcceEe---eCc
Confidence                 1122345677777777778888888999999999998887643221    2222337788999988776   355


Q ss_pred             eEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 005656          275 DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG  354 (685)
Q Consensus       275 ~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s  354 (685)
                        .+||++..+.++.+..-.....-.|+|.|..+++.+     .|||+++-+.++....-.  -..+.|+..|..+...-
T Consensus      1250 --vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~Ld--qc~VtFNstG~VmYa~~ 1320 (1516)
T KOG1832|consen 1250 --VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSLD--QCAVTFNSTGDVMYAML 1320 (1516)
T ss_pred             --eeeeeccHHHHhhhhhheecccccccCCCceEEeec-----hhhhhHHHHHHhcCcccc--ceEEEeccCccchhhhh
Confidence              479999887776665444444567999999888865     489999988776554322  35677888777554332


Q ss_pred             -----C------------CCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCC
Q 005656          355 -----M------------DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ  398 (685)
Q Consensus       355 -----~------------Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~  398 (685)
                           .            -...|.++......+.++.....+..++-+|...+|++-...+
T Consensus      1321 ~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~vIe~~~ 1381 (1516)
T KOG1832|consen 1321 NIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGVIEMED 1381 (1516)
T ss_pred             hhhhhhhhhcccccccchhhhhccccccccccceeeecccchhhhhcCCccceEEEEeccC
Confidence                 0            1246777777888888998888899999999988888775443

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.31  E-value=5.5e-08  Score=110.53  Aligned_cols=370  Identities=14%  Similarity=0.176  Sum_probs=221.4

Q ss_pred             CcEEEEEEccCCCCEEEEEeCCCcEEEE----eCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecC-
Q 005656            3 GAVTALAFSSDGQPLLASGASSGVISIW----NLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT-   77 (685)
Q Consensus         3 ~~V~~l~fspdg~~~latg~~dg~I~vw----d~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~-   77 (685)
                      +.|.++.|-++.. -++.+..+|.|.+.    +..+......  +.-+.+|.+++||||+.+|+.++.++++.+-.-+- 
T Consensus        76 ~~ivs~~yl~d~~-~l~~~~~~Gdi~~~~~~~~~~~~~~E~V--G~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd  152 (928)
T PF04762_consen   76 DKIVSFQYLADSE-SLCIALASGDIILVREDPDPDEDEIEIV--GSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFD  152 (928)
T ss_pred             CcEEEEEeccCCC-cEEEEECCceEEEEEccCCCCCceeEEE--EEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccce
Confidence            5688999999987 67778889999999    5544432221  23568999999999999999998888887653210 


Q ss_pred             ---------C-CCCCcee---------------------------------EecccCCCCCeEEEEecCCCEEEEEeC--
Q 005656           78 ---------T-DGDPRLL---------------------------------RFRSGHSAPPLCIRFYANGRHILSAGQ--  112 (685)
Q Consensus        78 ---------~-~~~~~~~---------------------------------~~~~~h~~~v~~i~~~~~~~~l~s~s~--  112 (685)
                               . -+..+.+                                 ..+. +...-..|+|-.||.++++.+.  
T Consensus       153 ~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~  231 (928)
T PF04762_consen  153 PISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEP  231 (928)
T ss_pred             EEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEc
Confidence                     0 0000000                                 0011 2334567899999999998764  


Q ss_pred             -C---CceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEE--cCCceEEEEEcC
Q 005656          113 -D---RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH--MDTAQAYVWRLQ  186 (685)
Q Consensus       113 -d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~w~~~  186 (685)
                       .   +.+|||+-+ +...... .                    ++..+...-...+.+..+++..  .+...+..|.-+
T Consensus       232 ~~~~~R~iRVy~Re-G~L~stS-E--------------------~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN  289 (928)
T PF04762_consen  232 ETGSRRVIRVYSRE-GELQSTS-E--------------------PVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN  289 (928)
T ss_pred             CCCceeEEEEECCC-ceEEecc-c--------------------cCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC
Confidence             2   578888754 2211111 0                    1111111111111222233222  234566667666


Q ss_pred             ccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCC-C
Q 005656          187 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-T  265 (685)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~  265 (685)
                      ..+.++..+.. ......+..+.|++++..|++...+. |.+|-..+.....+..     ........+..+.|+|.. .
T Consensus       290 GLrhgeF~l~~-~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqe-----i~~~~~~~~~~~~Wdpe~p~  362 (928)
T PF04762_consen  290 GLRHGEFTLRF-DPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQE-----IRFSSSESVNFVKWDPEKPL  362 (928)
T ss_pred             CcEeeeEecCC-CCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEE-----EEccCCCCCCceEECCCCCC
Confidence            66666655443 34556789999999999999988666 9999887754322211     111333445558898854 3


Q ss_pred             EEEEEECCCeEEEEECC----CC----------------c----------------eEEEeecCCceeEEEEeecCCEEE
Q 005656          266 LMISAGYHGDIKVWDFK----GR----------------D----------------LKSRWEVGCSLVKIVYHRVNGLLA  309 (685)
Q Consensus       266 ~l~s~s~dg~i~iwd~~----~~----------------~----------------~~~~~~~~~~i~~~~~~~~~~~l~  309 (685)
                      .|...+.+|.+..+++.    .+                .                ....+..+.+|.+++|++++..++
T Consensus       363 ~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~a  442 (928)
T PF04762_consen  363 RLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFA  442 (928)
T ss_pred             EEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEE
Confidence            45555555665544331    11                0                012334457899999999998899


Q ss_pred             EEeCCCeEEEEEcCCCee--------EEEEe----------cCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCc
Q 005656          310 TVADDLVIRLFDVVALRM--------VRKFE----------GHTDRITDFCFSEDGKWLLSSGMD---GSLRIWDVILAR  368 (685)
Q Consensus       310 ~~~~dg~I~i~d~~~~~~--------~~~~~----------~h~~~I~~l~~spdg~~l~s~s~D---g~I~iwd~~~~~  368 (685)
                      +-..||.|.+|.......        ...+.          .....+..++|..+...++..+.+   ..+.++++....
T Consensus       443 vl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  522 (928)
T PF04762_consen  443 VLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSE  522 (928)
T ss_pred             EEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCC
Confidence            999999999998543211        11111          123457888898877766666554   678888885432


Q ss_pred             ---eeeEE-eeccceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656          369 ---QIDAI-HVDVSITALSLSPNMDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       369 ---~i~~~-~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~  406 (685)
                         .+... .....+..+...++...++.-..+| .|+..+.
T Consensus       523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G-~v~~~~~  563 (928)
T PF04762_consen  523 NSASVESSTEVDGVVLIISSSPDSGSLYIQTNDG-KVFQLSS  563 (928)
T ss_pred             CceeEEEEeccCceEEEEeeCCCCcEEEEEECCC-EEEEeec
Confidence               22222 2344466666666665455555566 6775543

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.30  E-value=1.5e-09  Score=112.37  Aligned_cols=119  Identities=16%  Similarity=0.228  Sum_probs=95.9

Q ss_pred             cEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCC------------CcEEEEecCCCcEE
Q 005656            4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN------------EPVLMSASADNSIK   71 (685)
Q Consensus         4 ~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~------------~~~l~s~s~D~~v~   71 (685)
                      .-.++.|+|.|  ++|-|+. ..|.|-|..+-+.++.+. -|...|+.+.|.|-            ..+||++...|.|.
T Consensus        17 N~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iqsie-~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi   92 (1062)
T KOG1912|consen   17 NRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQSIE-LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII   92 (1062)
T ss_pred             cccccccCccc--eEEEecC-ceEEEEehhhhhhhhccc-cCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence            35678899988  6888774 568999999999999998 89999999999872            23677888889999


Q ss_pred             EEEecCCCCCCceeEecccCCCCCeEEEEecC---C-CEEEEEeCCCceEEEEeecCceeeEe
Q 005656           72 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN---G-RHILSAGQDRAFRLFSVIQDQQSREL  130 (685)
Q Consensus        72 iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~---~-~~l~s~s~dg~i~vwd~~~~~~~~~~  130 (685)
                      +||+...    ..+..+..|..++..++|.+.   . ..|+.-....++.+|+..+|+.....
T Consensus        93 l~d~~~~----s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~  151 (1062)
T KOG1912|consen   93 LVDFVLA----SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKY  151 (1062)
T ss_pred             EEEehhh----hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecc
Confidence            9999887    555666789999999999873   4 45666677889999999988765443

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.27  E-value=7.9e-10  Score=101.98  Aligned_cols=278  Identities=15%  Similarity=0.180  Sum_probs=181.9

Q ss_pred             EEEEEe------------CCCcEEEEeCCCCeeeE--EeecccccCeeEEEEeC---CCc-EEEEecCCCcEEEEEecCC
Q 005656           17 LLASGA------------SSGVISIWNLEKRRLQS--VIREAHDNAIISLHFFA---NEP-VLMSASADNSIKMWIFDTT   78 (685)
Q Consensus        17 ~latg~------------~dg~I~vwd~~~~~~~~--~~~~~h~~~V~~l~~sp---~~~-~l~s~s~D~~v~iWd~~~~   78 (685)
                      +||+|+            ..|.+.+|++...+...  +++...+..+..+.|+.   +|. .++-+-.+|.|.++..+..
T Consensus        26 vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~  105 (339)
T KOG0280|consen   26 VLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDED  105 (339)
T ss_pred             eEEEeeEEecCCCCchheeccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccc
Confidence            777775            34789999988766543  33324456778888875   444 5666777899999976554


Q ss_pred             CCCCceeEecccCCC---CCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCcee
Q 005656           79 DGDPRLLRFRSGHSA---PPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI  155 (685)
Q Consensus        79 ~~~~~~~~~~~~h~~---~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (685)
                      ... -.++.+..-.-   ...++.|++.+..++++-.+|.+.+-+........                           
T Consensus       106 ~ss-~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~---------------------------  157 (339)
T KOG0280|consen  106 ESS-VHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEK---------------------------  157 (339)
T ss_pred             eee-eeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeee---------------------------
Confidence            211 11111111111   23567888888889998888888744332221111                           


Q ss_pred             eeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEcc-CCCEEEEEecCCcEEEEECCC-
Q 005656          156 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQS-  233 (685)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~~~d~~~-  233 (685)
                                              +.               ....|..++..+.|+. +.+.+++|+.||.+..||++. 
T Consensus       158 ------------------------vq---------------~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p  198 (339)
T KOG0280|consen  158 ------------------------VQ---------------TWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIP  198 (339)
T ss_pred             ------------------------cc---------------cccccceeeeeeecccCCCceEEecCCCceEEEEEecCC
Confidence                                    00               1115666677777765 447889999999999999993 


Q ss_pred             CccccccccccccccCCCCcCEEEEEEcCC-CCEEEEEECCCeEEEEECC-CCceEEEeecCCceeEEEEeecCC-EEEE
Q 005656          234 GISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMISAGYHGDIKVWDFK-GRDLKSRWEVGCSLVKIVYHRVNG-LLAT  310 (685)
Q Consensus       234 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~i~~~~~~~~~~-~l~~  310 (685)
                      +..+..       ....|...|.+|.-+|. +.+++||+.|-.|++||.+ -++++..-...+.|..+..+|.-. .++.
T Consensus       199 ~~~i~~-------n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~  271 (339)
T KOG0280|consen  199 KTFIWH-------NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLA  271 (339)
T ss_pred             cceeee-------cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHH
Confidence            322222       12378899999988764 6799999999999999998 567777777779999999998644 3333


Q ss_pred             EeCCCeEEEEEcCCC--e---eEEEEecCCCCeEEEEEcCCCCEEEEEe-CCCcEE-EEEcCCCc
Q 005656          311 VADDLVIRLFDVVAL--R---MVRKFEGHTDRITDFCFSEDGKWLLSSG-MDGSLR-IWDVILAR  368 (685)
Q Consensus       311 ~~~dg~I~i~d~~~~--~---~~~~~~~h~~~I~~l~~spdg~~l~s~s-~Dg~I~-iwd~~~~~  368 (685)
                      ++..+-.+|.+...+  +   .....+.|.+-...-.|......|+|++ .|+.++ +|-..++.
T Consensus       272 ~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~  336 (339)
T KOG0280|consen  272 ACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE  336 (339)
T ss_pred             HHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence            344444667776654  3   3445567777777777754445788876 677755 77655443

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.26  E-value=4.9e-11  Score=122.35  Aligned_cols=287  Identities=15%  Similarity=0.227  Sum_probs=197.0

Q ss_pred             CCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCC-CeeeEEeecccccCeeEEEEeCCCc---EEEEecCCCcEEEEEecC
Q 005656            2 RGAVTALAFSSDGQPLLASGASSGVISIWNLEK-RRLQSVIREAHDNAIISLHFFANEP---VLMSASADNSIKMWIFDT   77 (685)
Q Consensus         2 ~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~-~~~~~~~~~~h~~~V~~l~~sp~~~---~l~s~s~D~~v~iWd~~~   77 (685)
                      .+++.+++.+|.|+ -+|.++.-| +.+-|+.. +....-+.+-..-.|-.+.|+|...   ++++.+. ..-.+|++..
T Consensus        24 ~~~~~a~si~p~gr-di~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~-qkaiiwnlA~  100 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGR-DIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSN-QKAIIWNLAK  100 (1081)
T ss_pred             cCcccceeeccccc-hhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCc-chhhhhhhhc
Confidence            36788999999998 777887767 66777765 3333333311223477788988543   5555554 4556898876


Q ss_pred             CCCCCceeEecccCCCCCeEEEEecCC-CEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceee
Q 005656           78 TDGDPRLLRFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA  156 (685)
Q Consensus        78 ~~~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (685)
                      ... ..+-..+.||...|+.+.|+|.. ..+++++.|-.+..||+++.....                            
T Consensus       101 ss~-~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~----------------------------  151 (1081)
T KOG0309|consen  101 SSS-NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPF----------------------------  151 (1081)
T ss_pred             CCc-cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcce----------------------------
Confidence            533 24445678999999999999864 478899999999999997654321                            


Q ss_pred             eecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcc
Q 005656          157 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS  236 (685)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~  236 (685)
                                              +.|+               .-......+.|+.....+.+.+....|.+||++.|..
T Consensus       152 ------------------------ys~~---------------~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~  192 (1081)
T KOG0309|consen  152 ------------------------YSTS---------------SWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGST  192 (1081)
T ss_pred             ------------------------eeee---------------cccccCceeeecccCcchhhhccCCceEEEeccCCCc
Confidence                                    1111               1234455677777666677777888899999988765


Q ss_pred             ccccccccccccCCCCcCEEEEEEcCC-CCEEEEEECCCeEEEEECCCC--ceEEEeecCCceeEEEEeecCCEEEEE--
Q 005656          237 RGSYLDMSERSNYAHNGEVVGVACDST-NTLMISAGYHGDIKVWDFKGR--DLKSRWEVGCSLVKIVYHRVNGLLATV--  311 (685)
Q Consensus       237 ~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~--  311 (685)
                      .....       .+|...|.++.|..- ...+.+++.||+|++||....  ...++.....++..-.+.|-|.-.++-  
T Consensus       193 pl~s~-------K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~  265 (1081)
T KOG0309|consen  193 PLCSL-------KGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPM  265 (1081)
T ss_pred             ceEEe-------cccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccc
Confidence            43322       278888888888653 346889999999999998743  445555666778777777766522221  


Q ss_pred             eCCCeEEEEEcC---------C-CeeEEEEecCCCCeEEEEEcCC--------CC--EEEEEeCCCcEEEEEcCC
Q 005656          312 ADDLVIRLFDVV---------A-LRMVRKFEGHTDRITDFCFSED--------GK--WLLSSGMDGSLRIWDVIL  366 (685)
Q Consensus       312 ~~dg~I~i~d~~---------~-~~~~~~~~~h~~~I~~l~~spd--------g~--~l~s~s~Dg~I~iwd~~~  366 (685)
                      -.+..+.+++.+         + .+++.+|.||...|....|-..        .+  .|+|-|.|.++++|-+.+
T Consensus       266 ~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  266 VGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             cCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            122244444433         2 3789999999999887776432        22  699999999999998764

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.25  E-value=4.9e-11  Score=118.36  Aligned_cols=288  Identities=17%  Similarity=0.189  Sum_probs=193.8

Q ss_pred             cccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCC---CceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEE
Q 005656           43 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD---PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF  119 (685)
Q Consensus        43 ~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~---~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vw  119 (685)
                      .||...|..++-..+.+-+++++.|.+|++|.+......   ..+..+...|..+|.++.|..+.++++++  ||.|.+|
T Consensus       732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlW  809 (1034)
T KOG4190|consen  732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLW  809 (1034)
T ss_pred             cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceee
Confidence            389999999998889999999999999999998764322   23666778999999999999998887765  8899999


Q ss_pred             EeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCC
Q 005656          120 SVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCP  199 (685)
Q Consensus       120 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  199 (685)
                      |.--++......                                                   |.            +..
T Consensus       810 DPFigr~Laq~~---------------------------------------------------da------------pk~  826 (1034)
T KOG4190|consen  810 DPFIGRLLAQME---------------------------------------------------DA------------PKE  826 (1034)
T ss_pred             cccccchhHhhh---------------------------------------------------cC------------ccc
Confidence            975544322110                                                   00            000


Q ss_pred             CCCCCeEEEEEccCCCEEEEE-ecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEE
Q 005656          200 ENPTAVKACTISACGNFAVLG-TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV  278 (685)
Q Consensus       200 ~~~~~v~~~~~s~~g~~l~~g-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~i  278 (685)
                      +..+.|.|+- +-+...+++| +...+|+++|.+++.....+..-   ...+.+.-++++++.+.|++++.+-..|.|.+
T Consensus       827 ~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVc---na~~Pna~~R~iaVa~~GN~lAa~LSnGci~~  902 (1034)
T KOG4190|consen  827 GAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVC---NAPGPNALTRAIAVADKGNKLAAALSNGCIAI  902 (1034)
T ss_pred             CCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEec---cCCCCchheeEEEeccCcchhhHHhcCCcEEE
Confidence            1112222221 2234455555 66789999999998876655311   11256678999999999999999999999999


Q ss_pred             EECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEE-EEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q 005656          279 WDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRL-FDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD  356 (685)
Q Consensus       279 wd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i-~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~D  356 (685)
                      .|.++|+.+..+..- .....++ .|..+.++....|.++.+ |...++....+.+....+..-+  -.-|.-|+++...
T Consensus       903 LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppepahfl--qsvgpSLV~a~~G  979 (1034)
T KOG4190|consen  903 LDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFL--QSVGPSLVTAQNG  979 (1034)
T ss_pred             EecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhh--hccCceeEEeccC
Confidence            999999988876542 3333333 355667777778888888 8877776655554333332211  1235567777776


Q ss_pred             CcEEEEEcCC-------CceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEE
Q 005656          357 GSLRIWDVIL-------ARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYL  403 (685)
Q Consensus       357 g~I~iwd~~~-------~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~l  403 (685)
                      ..+.+|.-..       -..++.-...+..++++--|-+.-+..|...| .|.+
T Consensus       980 n~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G-~IaL 1032 (1034)
T KOG4190|consen  980 NILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHG-AIAL 1032 (1034)
T ss_pred             cEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCC-ceee
Confidence            7778874211       11222223455588888888777677776665 5554

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.24  E-value=6.7e-11  Score=132.39  Aligned_cols=197  Identities=14%  Similarity=0.259  Sum_probs=160.9

Q ss_pred             cEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCc
Q 005656            4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPR   83 (685)
Q Consensus         4 ~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~   83 (685)
                      .|.++.=+|... +.+||+.||.|++|....+..+...+.+-...|+.+.|+.+|+.+..+..||.+.+|...     ++
T Consensus      2210 ~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-----pk 2283 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDP-YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-----PK 2283 (2439)
T ss_pred             ceeeecCCCCCc-eEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-----Cc
Confidence            466677778776 888999999999999999988888876666999999999999999999999999999766     37


Q ss_pred             eeEecccCCCCCeEEEEecCCCEEEEEe---CCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656           84 LLRFRSGHSAPPLCIRFYANGRHILSAG---QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  160 (685)
Q Consensus        84 ~~~~~~~h~~~v~~i~~~~~~~~l~s~s---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (685)
                      ++...+.|.......+|-.  ..+++++   .++.+.+||..-......+                              
T Consensus      2284 ~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v------------------------------ 2331 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLV------------------------------ 2331 (2439)
T ss_pred             ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCccccee------------------------------
Confidence            7888889999999999986  4677765   3678999997432211110                              


Q ss_pred             cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656          161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  240 (685)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~  240 (685)
                                                          + ..|...++++++-|....+++|+.+|.|++||++..+.++.+
T Consensus      2332 ------------------------------------~-~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~ 2374 (2439)
T KOG1064|consen 2332 ------------------------------------H-TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTF 2374 (2439)
T ss_pred             ------------------------------------e-eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHh
Confidence                                                0 167889999999999999999999999999999988887776


Q ss_pred             ccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC
Q 005656          241 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG  293 (685)
Q Consensus       241 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  293 (685)
                      .        .         ++ ...++++++..|.++||++....++..+...
T Consensus      2375 ~--------~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2375 Q--------A---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSE 2409 (2439)
T ss_pred             h--------h---------hh-hhheeeccCcccceEEEEccccchhhcCchh
Confidence            4        1         44 5678999999999999999988777766653

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.24  E-value=2.9e-09  Score=106.33  Aligned_cols=271  Identities=10%  Similarity=0.093  Sum_probs=164.3

Q ss_pred             cEEEEEEccCCCCEEEEEeC-----------CCcEEEEeCCCCeeeEEeec--ccccCeeEEEEeCCCcEEEEecCCCcE
Q 005656            4 AVTALAFSSDGQPLLASGAS-----------SGVISIWNLEKRRLQSVIRE--AHDNAIISLHFFANEPVLMSASADNSI   70 (685)
Q Consensus         4 ~V~~l~fspdg~~~latg~~-----------dg~I~vwd~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~l~s~s~D~~v   70 (685)
                      .|.-+.|||..+ +|+|=+.           ...++|||+.+|...+.+..  +....-.-..||.|++++|--.. ++|
T Consensus       251 ~Vq~idfSP~Ek-YLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~si  328 (698)
T KOG2314|consen  251 GVQFIDFSPNEK-YLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSI  328 (698)
T ss_pred             CceeeecCCccc-eEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceE
Confidence            377899999998 8887542           25799999999999888762  11122234689999999998766 578


Q ss_pred             EEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeC-----CCceEEEEeecCceeeEechhhHHHHHhhcccc
Q 005656           71 KMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ-----DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK  145 (685)
Q Consensus        71 ~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  145 (685)
                      .|++...-    .++....-.-..|....|+|.+..|+.=..     -..+.+..+.+.+.++...              
T Consensus       329 sIyEtpsf----~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~n--------------  390 (698)
T KOG2314|consen  329 SIYETPSF----MLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKN--------------  390 (698)
T ss_pred             EEEecCce----eeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeecc--------------
Confidence            99965432    233222233456888899999776653211     0122222222222111110              


Q ss_pred             ccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe----
Q 005656          146 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT----  221 (685)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~----  221 (685)
                                                                            -+.-.=..+.|-.+|.+|++-.    
T Consensus       391 ------------------------------------------------------lfnVsDckLhWQk~gdyLcvkvdR~t  416 (698)
T KOG2314|consen  391 ------------------------------------------------------LFNVSDCKLHWQKSGDYLCVKVDRHT  416 (698)
T ss_pred             ------------------------------------------------------ceeeeccEEEeccCCcEEEEEEEeec
Confidence                                                                  0011112234445555555421    


Q ss_pred             ------cCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC---CCeEEEEECCCC----ceEE
Q 005656          222 ------AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY---HGDIKVWDFKGR----DLKS  288 (685)
Q Consensus       222 ------~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~---dg~i~iwd~~~~----~~~~  288 (685)
                            .-..+.++.++.........        .-...|...+|.|.|..+++-+.   ..++.+|.+.+.    +++.
T Consensus       417 K~~~~g~f~n~eIfrireKdIpve~v--------elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk  488 (698)
T KOG2314|consen  417 KSKVKGQFSNLEIFRIREKDIPVEVV--------ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVK  488 (698)
T ss_pred             cccccceEeeEEEEEeeccCCCceee--------ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhh
Confidence                  11235566655443322211        45678999999999988776553   357888888732    2222


Q ss_pred             EeecCCceeEEEEeecCCEEEEEe---CCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q 005656          289 RWEVGCSLVKIVYHRVNGLLATVA---DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG  357 (685)
Q Consensus       289 ~~~~~~~i~~~~~~~~~~~l~~~~---~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg  357 (685)
                      .+.. ...+.+.|+|.|++++++.   ..|.+.++|+.-..+..+-.......+.+.|.|.|+|+++++.-.
T Consensus       489 ~~dk-~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~w  559 (698)
T KOG2314|consen  489 ELDK-KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSW  559 (698)
T ss_pred             hhcc-cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehh
Confidence            3322 5678899999999887764   478999999885333222221223467889999999999998543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.24  E-value=1.1e-08  Score=118.45  Aligned_cols=264  Identities=13%  Similarity=0.109  Sum_probs=164.4

Q ss_pred             eEEEEeCC-CcEEEEecCCCcEEEEEecCCCCCCceeEeccc--------------CCCCCeEEEEecCCCEEEEEeC-C
Q 005656           50 ISLHFFAN-EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSG--------------HSAPPLCIRFYANGRHILSAGQ-D  113 (685)
Q Consensus        50 ~~l~~sp~-~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~--------------h~~~v~~i~~~~~~~~l~s~s~-d  113 (685)
                      ..++++++ +.++++-+.++.|++||.+..     .+....+              +-..+..+++.++++.|+++.. .
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-----~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n  645 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-----FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN  645 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCC-----EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC
Confidence            36788874 667777778889999987542     2222111              1234788999998877666654 5


Q ss_pred             CceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCce
Q 005656          114 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH  193 (685)
Q Consensus       114 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  193 (685)
                      +.|+++|..++.. ..+......                                           .  .+......+..
T Consensus       646 ~~Ir~id~~~~~V-~tlag~G~~-------------------------------------------g--~~~~gg~~~~~  679 (1057)
T PLN02919        646 HALREIDFVNETV-RTLAGNGTK-------------------------------------------G--SDYQGGKKGTS  679 (1057)
T ss_pred             ceEEEEecCCCEE-EEEeccCcc-------------------------------------------c--CCCCCChhhhH
Confidence            6789888766532 222100000                                           0  00000000000


Q ss_pred             eecCCCCCCCCeEEEEEcc-CCCEEEEEecCCcEEEEECCCCcccccccccccccc------CCCCcCEEEEEEcCCCCE
Q 005656          194 ILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSN------YAHNGEVVGVACDSTNTL  266 (685)
Q Consensus       194 ~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~------~~h~~~v~~l~~~~~~~~  266 (685)
                            ..-.....++++| ++...++.+.++.|++||..++..............      ...-....+++++|++..
T Consensus       680 ------~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~  753 (1057)
T PLN02919        680 ------QVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKE  753 (1057)
T ss_pred             ------hhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCE
Confidence                  0012345789999 455566667789999999987754321100000000      011234678999999985


Q ss_pred             E-EEEECCCeEEEEECCCCceEEEee-----------c-----------CCceeEEEEeecCCEEEEEeCCCeEEEEEcC
Q 005656          267 M-ISAGYHGDIKVWDFKGRDLKSRWE-----------V-----------GCSLVKIVYHRVNGLLATVADDLVIRLFDVV  323 (685)
Q Consensus       267 l-~s~s~dg~i~iwd~~~~~~~~~~~-----------~-----------~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~  323 (685)
                      | ++.+.++.|++||+.++.......           .           -.....++++++|.++++-..++.|++||..
T Consensus       754 LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~  833 (1057)
T PLN02919        754 LYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPA  833 (1057)
T ss_pred             EEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECC
Confidence            5 455567899999998765321110           0           0124578999999988888899999999998


Q ss_pred             CCeeEEEEe-------------cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcee
Q 005656          324 ALRMVRKFE-------------GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI  370 (685)
Q Consensus       324 ~~~~~~~~~-------------~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i  370 (685)
                      ++.......             +.-.....++++++|+++++-+.++.|++||+.+++..
T Consensus       834 tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~~  893 (1057)
T PLN02919        834 TKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEAA  893 (1057)
T ss_pred             CCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCccc
Confidence            876553221             11235788999999998888889999999999988754

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.21  E-value=2.7e-08  Score=115.29  Aligned_cols=261  Identities=14%  Similarity=0.115  Sum_probs=162.4

Q ss_pred             EEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeec-c------------cccCeeEEEEeCCCcEEEEe-cCCCcEEE
Q 005656            7 ALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIRE-A------------HDNAIISLHFFANEPVLMSA-SADNSIKM   72 (685)
Q Consensus         7 ~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~-~------------h~~~V~~l~~sp~~~~l~s~-s~D~~v~i   72 (685)
                      .+++++++..++++-+.++.|++||..... +..+.. +            +-.....+++.++++.|+.+ ...+.|++
T Consensus       572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~  650 (1057)
T PLN02919        572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNF-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE  650 (1057)
T ss_pred             eEEEECCCCeEEEEECCCCeEEEEeCCCCE-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence            578887543377777788999999986543 333321 1            11235789999988765554 44567888


Q ss_pred             EEecCCCCCCceeEeccc-----------------CCCCCeEEEEec-CCCEEEEEeCCCceEEEEeecCceeeEechhh
Q 005656           73 WIFDTTDGDPRLLRFRSG-----------------HSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRH  134 (685)
Q Consensus        73 Wd~~~~~~~~~~~~~~~~-----------------h~~~v~~i~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~  134 (685)
                      +|+.++    . +.++.+                 .-..+..++|+| ++..+++.+.++.|++||..++........  
T Consensus       651 id~~~~----~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~--  723 (1057)
T PLN02919        651 IDFVNE----T-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGD--  723 (1057)
T ss_pred             EecCCC----E-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecC--
Confidence            887553    1 111110                 012457899999 465666767789999999866543211000  


Q ss_pred             HHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCC
Q 005656          135 VAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG  214 (685)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  214 (685)
                                                                 +.....+      +. .  ...........++++|+|
T Consensus       724 -------------------------------------------G~~~~~~------g~-~--~~~~~~~~P~GIavspdG  751 (1057)
T PLN02919        724 -------------------------------------------GYERNLN------GS-S--GTSTSFAQPSGISLSPDL  751 (1057)
T ss_pred             -------------------------------------------CccccCC------CC-c--cccccccCccEEEEeCCC
Confidence                                                       0000000      00 0  000112346789999999


Q ss_pred             CEEE-EEecCCcEEEEECCCCcccccccccc-----cccc--------CCCCcCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 005656          215 NFAV-LGTAGGWIERFNLQSGISRGSYLDMS-----ERSN--------YAHNGEVVGVACDSTNTLMISAGYHGDIKVWD  280 (685)
Q Consensus       215 ~~l~-~g~~dg~i~~~d~~~~~~~~~~~~~~-----~~~~--------~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd  280 (685)
                      +.++ +.+.++.|++||+.++..........     ....        ...-....+++++++|..+++-+.++.|++||
T Consensus       752 ~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD  831 (1057)
T PLN02919        752 KELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLD  831 (1057)
T ss_pred             CEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEE
Confidence            8555 45567899999998765321110000     0000        00112346899999999888888999999999


Q ss_pred             CCCCceEEEeecC--------------CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCee
Q 005656          281 FKGRDLKSRWEVG--------------CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM  327 (685)
Q Consensus       281 ~~~~~~~~~~~~~--------------~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~  327 (685)
                      ..++........+              .....++++++|+++++-+.++.|++||+.+++.
T Consensus       832 ~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        832 PATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             CCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            9887665433211              2467899999999888888999999999998865

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.15  E-value=2.1e-10  Score=128.60  Aligned_cols=237  Identities=13%  Similarity=0.118  Sum_probs=171.8

Q ss_pred             cEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHH
Q 005656           59 PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKR  138 (685)
Q Consensus        59 ~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  138 (685)
                      +....+..++...-|......   .   ....+-..|.++.=+|...+.++|+.||.+++|....++.+..+..      
T Consensus      2181 ~~~~~~n~~~~~~tq~~~~~~---~---~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt------ 2248 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGAS---V---MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRT------ 2248 (2439)
T ss_pred             ccCCcccCCccccceecccce---e---EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeec------
Confidence            344444445555555332221   1   2234566788888889888999999999999999877765544432      


Q ss_pred             HhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEE
Q 005656          139 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAV  218 (685)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  218 (685)
                                                                                   ..+..++.+.|+.+|+.+.
T Consensus      2249 -------------------------------------------------------------~g~s~vtr~~f~~qGnk~~ 2267 (2439)
T KOG1064|consen 2249 -------------------------------------------------------------AGNSRVTRSRFNHQGNKFG 2267 (2439)
T ss_pred             -------------------------------------------------------------cCcchhhhhhhcccCCcee
Confidence                                                                         2237788999999999999


Q ss_pred             EEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE---CCCeEEEEECCCC---ceEEEeec
Q 005656          219 LGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG---YHGDIKVWDFKGR---DLKSRWEV  292 (685)
Q Consensus       219 ~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s---~dg~i~iwd~~~~---~~~~~~~~  292 (685)
                      ++..||.+.+|........         ....|+.....+.|-.  ..+++++   .++.+.+||.--.   .++. .-|
T Consensus      2268 i~d~dg~l~l~q~~pk~~~---------s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H 2335 (2439)
T KOG1064|consen 2268 IVDGDGDLSLWQASPKPYT---------SWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCH 2335 (2439)
T ss_pred             eeccCCceeecccCCccee---------ccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee-eec
Confidence            9999999999998722221         2227888888888865  5566664   5678999996532   2333 455


Q ss_pred             CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeE
Q 005656          293 GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDA  372 (685)
Q Consensus       293 ~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~  372 (685)
                      .+.++++++-|..++|++|+.+|.|++||++..+.++.+..         +. ...++++|+..|.++||++..-.++..
T Consensus      2336 ~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~ 2405 (2439)
T KOG1064|consen 2336 DGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHT 2405 (2439)
T ss_pred             CCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhc
Confidence            68999999999999999999999999999998887776664         43 456899999999999999998888877


Q ss_pred             EeeccceEEEEEcCCCCeE
Q 005656          373 IHVDVSITALSLSPNMDVL  391 (685)
Q Consensus       373 ~~~~~~v~~v~~spdg~~L  391 (685)
                      +.+...-.++ |-..|..+
T Consensus      2406 ~p~e~ak~gf-Fr~~g~Q~ 2423 (2439)
T KOG1064|consen 2406 FPSEHAKQGF-FRNIGMQI 2423 (2439)
T ss_pred             Cchhhcccch-hhhcCcee
Confidence            7654333333 44444333

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.14  E-value=2e-08  Score=105.10  Aligned_cols=261  Identities=14%  Similarity=0.076  Sum_probs=159.7

Q ss_pred             EEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCC-
Q 005656           17 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP-   95 (685)
Q Consensus        17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v-   95 (685)
                      .+++++.+|.+..+|..+|+.+....  -.+.+.+.-.. .+..++.++.++.+..||..++.    .+.......... 
T Consensus       107 ~v~v~~~~g~l~ald~~tG~~~W~~~--~~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~----~~W~~~~~~~~~~  179 (377)
T TIGR03300       107 LVFVGTEKGEVIALDAEDGKELWRAK--LSSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGE----RLWTYSRVTPALT  179 (377)
T ss_pred             EEEEEcCCCEEEEEECCCCcEeeeec--cCceeecCCEE-ECCEEEEECCCCeEEEEEcCCCc----eeeEEccCCCcee
Confidence            57778889999999999999887665  22233221111 24466677789999999987763    222221111110 


Q ss_pred             ----eEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceE
Q 005656           96 ----LCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVV  171 (685)
Q Consensus        96 ----~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (685)
                          .+....  +..++.+..+|.+..+|..+++..........                                    
T Consensus       180 ~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~------------------------------------  221 (377)
T TIGR03300       180 LRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALP------------------------------------  221 (377)
T ss_pred             ecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccC------------------------------------
Confidence                111111  24677788889999999887765432210000                                    


Q ss_pred             EEEcCCceEEEEEcCccccCceeecCCCCCCCCe-EEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCC
Q 005656          172 TCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAV-KACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYA  250 (685)
Q Consensus       172 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~  250 (685)
                                        .+....    .....+ .+..+  .+..+++++.+|.++.||..+|+......         
T Consensus       222 ------------------~g~~~~----~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~---------  268 (377)
T TIGR03300       222 ------------------KGRTEL----ERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRD---------  268 (377)
T ss_pred             ------------------CCCCch----hhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeec---------
Confidence                              000000    000000 00011  25678888899999999999998765442         


Q ss_pred             CCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEee-cCC-ceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeE
Q 005656          251 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE-VGC-SLVKIVYHRVNGLLATVADDLVIRLFDVVALRMV  328 (685)
Q Consensus       251 h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~-~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~  328 (685)
                      .. .......  .+..++.++.||.+..+|..+++.+.... ... .......  .+..+++++.+|.++++|..+++.+
T Consensus       269 ~~-~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~  343 (377)
T TIGR03300       269 AS-SYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFV  343 (377)
T ss_pred             cC-CccCceE--eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence            11 1112222  35678888889999999999998876653 221 1222222  4678999999999999999999999


Q ss_pred             EEEecCCCCeEE-EEEcCCCCEEEEEeCCCcEEEE
Q 005656          329 RKFEGHTDRITD-FCFSEDGKWLLSSGMDGSLRIW  362 (685)
Q Consensus       329 ~~~~~h~~~I~~-l~~spdg~~l~s~s~Dg~I~iw  362 (685)
                      .++..+...+.. ..+. ++ .|+.++.||.|+.|
T Consensus       344 ~~~~~~~~~~~~sp~~~-~~-~l~v~~~dG~l~~~  376 (377)
T TIGR03300       344 ARLKTDGSGIASPPVVV-GD-GLLVQTRDGDLYAF  376 (377)
T ss_pred             EEEEcCCCccccCCEEE-CC-EEEEEeCCceEEEe
Confidence            988866654332 2332 34 58888899998876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.14  E-value=1.3e-08  Score=106.25  Aligned_cols=189  Identities=10%  Similarity=-0.032  Sum_probs=128.2

Q ss_pred             CeEEEEEccCCCE-EEEEec---CCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEE-EC--CCeE
Q 005656          204 AVKACTISACGNF-AVLGTA---GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA-GY--HGDI  276 (685)
Q Consensus       204 ~v~~~~~s~~g~~-l~~g~~---dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-s~--dg~i  276 (685)
                      ......|+|+|+. ++..+.   ...|+++|+.+++.....         ...+......|+|+|+.++.. +.  +..|
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt---------~~~g~~~~~~~SPDG~~la~~~~~~g~~~I  259 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA---------SSQGMLVVSDVSKDGSKLLLTMAPKGQPDI  259 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe---------cCCCcEEeeEECCCCCEEEEEEccCCCcEE
Confidence            6778999999985 554333   357999999888765433         334556677899999877644 33  3568


Q ss_pred             EEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCC-C--eEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE
Q 005656          277 KVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD-L--VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS  353 (685)
Q Consensus       277 ~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~  353 (685)
                      .++|+.++................|+|||+.|+..+.. +  .|+++|+.+++..+..... .  ....|||||++|+..
T Consensus       260 y~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g-~--~~~~~SPDG~~Ia~~  336 (419)
T PRK04043        260 YLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG-K--NNSSVSTYKNYIVYS  336 (419)
T ss_pred             EEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC-C--cCceECCCCCEEEEE
Confidence            88898888755443333334566899999977776643 2  7888999888764433211 1  124899999998866


Q ss_pred             eCC---------CcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656          354 GMD---------GSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       354 s~D---------g~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~  405 (685)
                      +..         ..|.+.|+.++... .+..........|+|||+.++.....++.-.+|.
T Consensus       337 ~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~  396 (419)
T PRK04043        337 SRETNNEFGKNTFNLYLISTNSDYIR-RLTANGVNQFPRFSSDGGSIMFIKYLGNQSALGI  396 (419)
T ss_pred             EcCCCcccCCCCcEEEEEECCCCCeE-ECCCCCCcCCeEECCCCCEEEEEEccCCcEEEEE
Confidence            643         36888898888653 3333333446899999999988877665545554

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.13  E-value=1.1e-08  Score=94.49  Aligned_cols=193  Identities=16%  Similarity=0.130  Sum_probs=129.5

Q ss_pred             eEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCC-CCEEEEEECCCeEEEEECC-
Q 005656          205 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMISAGYHGDIKVWDFK-  282 (685)
Q Consensus       205 v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~s~dg~i~iwd~~-  282 (685)
                      ..++.|++.+..++++.++|.+.+.+..........      ...+|.-......|+.. .+.+.+||.|+.+..||++ 
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq------~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~  197 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQ------TWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRI  197 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecc------cccccceeeeeeecccCCCceEEecCCCceEEEEEecC
Confidence            567889999999999999999996665544333211      12389999999998764 3688999999999999999 


Q ss_pred             CCceEEE--eecCCceeEEEEeec-CCEEEEEeCCCeEEEEEcCC-CeeEEEEecCCCCeEEEEEcCC--CCEEEEEeCC
Q 005656          283 GRDLKSR--WEVGCSLVKIVYHRV-NGLLATVADDLVIRLFDVVA-LRMVRKFEGHTDRITDFCFSED--GKWLLSSGMD  356 (685)
Q Consensus       283 ~~~~~~~--~~~~~~i~~~~~~~~-~~~l~~~~~dg~I~i~d~~~-~~~~~~~~~h~~~I~~l~~spd--g~~l~s~s~D  356 (685)
                      .++.+..  ..+...|.++.-+|. ..++++|+.|-.|++||.++ ++++..-. -.+.|..+.++|-  ++.|+++-..
T Consensus       198 p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~  276 (339)
T KOG0280|consen  198 PKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHN  276 (339)
T ss_pred             CcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhc
Confidence            3333332  334578888887764 56999999999999999984 55554433 3478999999994  3344444444


Q ss_pred             CcEEEEEcCCCcee--eEEeeccc----eEEEEEcCCCCeEEEEEeCCCeEE-EEE
Q 005656          357 GSLRIWDVILARQI--DAIHVDVS----ITALSLSPNMDVLATAHVDQNGVY-LWV  405 (685)
Q Consensus       357 g~I~iwd~~~~~~i--~~~~~~~~----v~~v~~spdg~~Lat~~~d~~~I~-lW~  405 (685)
                      | .+|-+...+..-  ..+..+..    +..-.|.....+|||++--++.++ +|-
T Consensus       277 G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl  331 (339)
T KOG0280|consen  277 G-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWL  331 (339)
T ss_pred             C-ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeee
Confidence            4 777777654332  12222222    444455444467888654434544 774

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.12  E-value=1.1e-07  Score=99.96  Aligned_cols=305  Identities=10%  Similarity=0.075  Sum_probs=181.6

Q ss_pred             EEEEEeCCCcEEEEeCCCCeeeEEeecccccCee----------EEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeE
Q 005656           17 LLASGASSGVISIWNLEKRRLQSVIREAHDNAII----------SLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLR   86 (685)
Q Consensus        17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~----------~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~   86 (685)
                      .+++++.+|.+.-+|..+|+.+..........+.          .+..  ++..++.++.++.+..+|..++...++.  
T Consensus        71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~--  146 (394)
T PRK11138         71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT--  146 (394)
T ss_pred             EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc--
Confidence            5667778899999999999988766522211110          1111  2456677778899999988777433222  


Q ss_pred             ecccCCCCCeE-EEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccccccc
Q 005656           87 FRSGHSAPPLC-IRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRER  165 (685)
Q Consensus        87 ~~~~h~~~v~~-i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (685)
                        ... ..+.+ ...  .+..++.++.+|.+..+|..+++..........                              
T Consensus       147 --~~~-~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~------------------------------  191 (394)
T PRK11138        147 --KVA-GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVP------------------------------  191 (394)
T ss_pred             --cCC-CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCC------------------------------
Confidence              111 11111 111  234677788899999999988876554421000                              


Q ss_pred             CCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccc
Q 005656          166 DWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSE  245 (685)
Q Consensus       166 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~  245 (685)
                                               .   . .......++    +  .+..+++++.+|.+..+|..+|+....+.....
T Consensus       192 -------------------------~---~-~~~~~~sP~----v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~  236 (394)
T PRK11138        192 -------------------------S---L-TLRGESAPA----T--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQP  236 (394)
T ss_pred             -------------------------c---c-cccCCCCCE----E--ECCEEEEEcCCCEEEEEEccCChhhheeccccC
Confidence                                     0   0 000001111    1  134577788899999999999887655421000


Q ss_pred             cccCCCC-cCEEEEEEcC--CCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEc
Q 005656          246 RSNYAHN-GEVVGVACDS--TNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDV  322 (685)
Q Consensus       246 ~~~~~h~-~~v~~l~~~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~  322 (685)
                      ..  .+. .....+..+|  .+..++.++.+|.+..+|..+++.+........ ..+  ...+..+++++.+|.+..+|.
T Consensus       237 ~~--~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~--~~~~~~vy~~~~~g~l~ald~  311 (394)
T PRK11138        237 TG--ATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSV-NDF--AVDGGRIYLVDQNDRVYALDT  311 (394)
T ss_pred             CC--ccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCCc-cCc--EEECCEEEEEcCCCeEEEEEC
Confidence            00  000 0001111111  245677777899999999999988776554322 112  234678888889999999999


Q ss_pred             CCCeeEEEEecCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeec-cceEE-EEEcCCCCeEEEEEeCCC
Q 005656          323 VALRMVRKFEGHT-DRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVD-VSITA-LSLSPNMDVLATAHVDQN  399 (685)
Q Consensus       323 ~~~~~~~~~~~h~-~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~-~~v~~-v~~spdg~~Lat~~~d~~  399 (685)
                      .+++.+-....-. ........  .+.+|+.++.||.|++.|..+|+.+...+.. ..+.+ ..+  .+..|++++.|| 
T Consensus       312 ~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G-  386 (394)
T PRK11138        312 RGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDG-  386 (394)
T ss_pred             CCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCc-
Confidence            9998765443211 11222222  2457888899999999999999998877653 22322 222  345788888786 


Q ss_pred             eEEEEE
Q 005656          400 GVYLWV  405 (685)
Q Consensus       400 ~I~lW~  405 (685)
                      .|+.+.
T Consensus       387 ~l~~~~  392 (394)
T PRK11138        387 TVYAIT  392 (394)
T ss_pred             eEEEEe
Confidence            787765

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=1.3e-09  Score=106.15  Aligned_cols=254  Identities=16%  Similarity=0.225  Sum_probs=180.6

Q ss_pred             ccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeC-CCceEEEEee
Q 005656           44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ-DRAFRLFSVI  122 (685)
Q Consensus        44 ~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~-dg~i~vwd~~  122 (685)
                      -|.+.|+.+.... .+++.+++.||.++.|--..- .....+..+..|...|.+++.+-+|..+.|.+. |..++++|+.
T Consensus         7 mhrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~i-sGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE   84 (558)
T KOG0882|consen    7 MHRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRI-SGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVE   84 (558)
T ss_pred             cccceeeeEeeeh-hheEEeeecchhhhhcCCCCc-cceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEee
Confidence            4788888876554 569999999999999954321 222455666789999999999999999999777 9999999997


Q ss_pred             cCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCC
Q 005656          123 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP  202 (685)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  202 (685)
                      +-.....+...                                                                  ..+
T Consensus        85 n~DminmiKL~------------------------------------------------------------------~lP   98 (558)
T KOG0882|consen   85 NFDMINMIKLV------------------------------------------------------------------DLP   98 (558)
T ss_pred             ccchhhhcccc------------------------------------------------------------------cCC
Confidence            65432221100                                                                  001


Q ss_pred             CCeEEEEEccCC----CEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEE
Q 005656          203 TAVKACTISACG----NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV  278 (685)
Q Consensus       203 ~~v~~~~~s~~g----~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~i  278 (685)
                      +.+.  .+...|    ...+..-.+|.+.++|-....+...+.      ..-|..+|..+.+.+.+..+++....|.|..
T Consensus        99 g~a~--wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~f------kklH~sPV~~i~y~qa~Ds~vSiD~~gmVEy  170 (558)
T KOG0882|consen   99 GFAE--WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYF------KKLHFSPVKKIRYNQAGDSAVSIDISGMVEY  170 (558)
T ss_pred             CceE--EecCCCCeeeeEEeecccCCCcEEECCcCCcCcccee------cccccCceEEEEeeccccceeeccccceeEe
Confidence            1111  111112    122333457889999877665433321      1279999999999999999999999999999


Q ss_pred             EECCC------CceEEEee----------cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEec---------
Q 005656          279 WDFKG------RDLKSRWE----------VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG---------  333 (685)
Q Consensus       279 wd~~~------~~~~~~~~----------~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~---------  333 (685)
                      |....      ..+...+.          ......++.|+|++..+.+-+.|..|++++..+++.++.+..         
T Consensus       171 Ws~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~  250 (558)
T KOG0882|consen  171 WSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQP  250 (558)
T ss_pred             ecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhcc
Confidence            99873      11211121          236678999999999999999999999999999887665431         


Q ss_pred             -----------------------CCC-CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEe
Q 005656          334 -----------------------HTD-RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH  374 (685)
Q Consensus       334 -----------------------h~~-~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~  374 (685)
                                             |.. .-+.+.|...|++|+-++.=| |+|.++.++++++.+.
T Consensus       251 ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g  314 (558)
T KOG0882|consen  251 KSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG  314 (558)
T ss_pred             ccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence                                   111 345678888999999998776 9999999998887764

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.10  E-value=3.6e-09  Score=98.21  Aligned_cols=332  Identities=16%  Similarity=0.248  Sum_probs=194.9

Q ss_pred             CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe-----eeEEeecccc------------cCeeEEEEeCCCc--EEEE
Q 005656            3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-----LQSVIREAHD------------NAIISLHFFANEP--VLMS   63 (685)
Q Consensus         3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~-----~~~~~~~~h~------------~~V~~l~~sp~~~--~l~s   63 (685)
                      ..|+++.|...|. +||||...|.|.+|.-+...     ....++ +|.            ..|..+.|..++.  .++.
T Consensus        27 d~ItaVefd~tg~-YlatGDkgGRVvlfer~~s~~ceykf~teFQ-she~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          27 DKITAVEFDETGL-YLATGDKGGRVVLFEREKSYGCEYKFFTEFQ-SHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ceeeEEEeccccc-eEeecCCCceEEEeecccccccchhhhhhhc-ccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            4699999999998 99999999999999765422     222343 554            4588889987654  4555


Q ss_pred             ecCCCcEEEEEecCC------------------CCC---------Cc------ee-----E-ecccCCCCCeEEEEecCC
Q 005656           64 ASADNSIKMWIFDTT------------------DGD---------PR------LL-----R-FRSGHSAPPLCIRFYANG  104 (685)
Q Consensus        64 ~s~D~~v~iWd~~~~------------------~~~---------~~------~~-----~-~~~~h~~~v~~i~~~~~~  104 (685)
                      .+.|.+|++|.+...                  .+.         ++      .+     + ....|..-+.++.|..|.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            668999999987543                  100         00      00     1 113566777888888777


Q ss_pred             CEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEE
Q 005656          105 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR  184 (685)
Q Consensus       105 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~  184 (685)
                      ..++++. |-.|.+|++.-......                                                    +-+
T Consensus       185 et~lSaD-dLrINLWnl~i~D~sFn----------------------------------------------------IVD  211 (460)
T COG5170         185 ETLLSAD-DLRINLWNLEIIDGSFN----------------------------------------------------IVD  211 (460)
T ss_pred             heeeecc-ceeeeeccccccCCceE----------------------------------------------------EEe
Confidence            7776654 66788887753322111                                                    111


Q ss_pred             cCccccCceeecCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEECCCCccccc----c----ccccccccCCCCcCE
Q 005656          185 LQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGGWIERFNLQSGISRGS----Y----LDMSERSNYAHNGEV  255 (685)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~~~d~~~~~~~~~----~----~~~~~~~~~~h~~~v  255 (685)
                      +....+.        ....-|++..|+|.. +.+...++.|.|++-|++.......    +    .........+....|
T Consensus       212 iKP~nme--------eLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSI  283 (460)
T COG5170         212 IKPHNME--------ELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSI  283 (460)
T ss_pred             ccCccHH--------HHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhh
Confidence            1111000        112346677788843 5566778889999999984322111    0    000000111334678


Q ss_pred             EEEEEcCCCCEEEEEECCCeEEEEECCC-CceEEEeecC-------------Cc---eeEEEEeecCCEEEEEeCCCeEE
Q 005656          256 VGVACDSTNTLMISAGYHGDIKVWDFKG-RDLKSRWEVG-------------CS---LVKIVYHRVNGLLATVADDLVIR  318 (685)
Q Consensus       256 ~~l~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~-------------~~---i~~~~~~~~~~~l~~~~~dg~I~  318 (685)
                      ..+.|+++|+++++-+. -+|++||.+. ..++.++..+             ..   -..+.|+-+.+.+.+|+..+..-
T Consensus       284 SD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfg  362 (460)
T COG5170         284 SDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFG  362 (460)
T ss_pred             cceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCccccccccccccee
Confidence            89999999999887654 6899999984 3455555432             11   23467888888999998888877


Q ss_pred             EEEcCCC-----eeEEEEecCCC----------CeEEEE-EcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccceEEE
Q 005656          319 LFDVVAL-----RMVRKFEGHTD----------RITDFC-FSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITAL  382 (685)
Q Consensus       319 i~d~~~~-----~~~~~~~~h~~----------~I~~l~-~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v  382 (685)
                      +|-..+.     -.+..+..|..          .|.... ...+.....+.+.+|.+..-.-+     ..+.....|...
T Consensus       363 iyp~~ssg~~D~g~vv~~ad~~a~~~~~k~~~nnv~kkd~~kn~~~rs~ss~a~g~~~~~eD~-----d~ld~~k~ilh~  437 (460)
T COG5170         363 IYPTDSSGFKDVGHVVNLADGSAEDFKVKCETNNVEKKDKLKNNDWRSVSSSADGFVVACEDP-----DNLDLLKKILHR  437 (460)
T ss_pred             eeccccCCCCcceEEEecccCCcccccCcccccccccccccccccccccccccCcceeeccCc-----chhHHHHHHHhh
Confidence            7764331     12233332221          111111 11112234445555544332211     222333346677


Q ss_pred             EEcCCCCeEEEEEeCCCeEEEEE
Q 005656          383 SLSPNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       383 ~~spdg~~Lat~~~d~~~I~lW~  405 (685)
                      .|+|-...+|.+..+  .+++|+
T Consensus       438 sWhp~e~svaiaatn--nlfvfs  458 (460)
T COG5170         438 SWHPFEDSVAIAATN--NLFVFS  458 (460)
T ss_pred             ccCCcccceeeeecC--ceEEEe
Confidence            899988888887655  577764

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.09  E-value=8.4e-08  Score=100.22  Aligned_cols=151  Identities=12%  Similarity=0.040  Sum_probs=98.4

Q ss_pred             CCeEEEEEccCCCEEEEEec---CCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC-CC--eE
Q 005656          203 TAVKACTISACGNFAVLGTA---GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-HG--DI  276 (685)
Q Consensus       203 ~~v~~~~~s~~g~~l~~g~~---dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-dg--~i  276 (685)
                      +......|+|||+.++....   +..|+++|+.++......         .+.+......|+|+|+.|+..+. .|  .|
T Consensus       233 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT---------~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~I  303 (419)
T PRK04043        233 GMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQIT---------NYPGIDVNGNFVEDDKRIVFVSDRLGYPNI  303 (419)
T ss_pred             CcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcc---------cCCCccCccEECCCCCEEEEEECCCCCceE
Confidence            34556779999988776543   357888898887644321         22222345579999988777663 23  68


Q ss_pred             EEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCC---------CeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCC
Q 005656          277 KVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD---------LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDG  347 (685)
Q Consensus       277 ~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------g~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg  347 (685)
                      +++|+.+++..+.......  ...|+|+|+.++.....         ..|.+.|+.++.. +.+... .......|+|||
T Consensus       304 y~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG  379 (419)
T PRK04043        304 FMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDG  379 (419)
T ss_pred             EEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCC
Confidence            8889988776444332222  35899999988776643         3788899988864 344432 233458899999


Q ss_pred             CEEEEEeCC-C--cEEEEEcCC
Q 005656          348 KWLLSSGMD-G--SLRIWDVIL  366 (685)
Q Consensus       348 ~~l~s~s~D-g--~I~iwd~~~  366 (685)
                      +.|+..+.+ +  .+.+.++..
T Consensus       380 ~~I~f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        380 GSIMFIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             CEEEEEEccCCcEEEEEEecCC
Confidence            988766533 2  355666543

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.07  E-value=6e-10  Score=110.78  Aligned_cols=279  Identities=15%  Similarity=0.224  Sum_probs=178.5

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCC-------CeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEE
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEK-------RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMW   73 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~-------~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iW   73 (685)
                      |+..|.+++--.+.+ -+++++.|.+|++|.++.       ..+..+++ .|+.+|.++.|..+-++++++  ||.|.+|
T Consensus       734 H~~~iRai~AidNEN-SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~-aHkk~i~~igfL~~lr~i~Sc--D~giHlW  809 (1034)
T KOG4190|consen  734 HQEKIRAIAAIDNEN-SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQ-AHKKPIHDIGFLADLRSIASC--DGGIHLW  809 (1034)
T ss_pred             cHHHhHHHHhccccc-ceeeccCCceEEEEEeccccCccccceeeeEhh-hccCcccceeeeeccceeeec--cCcceee
Confidence            445555554333333 588999999999999864       33667777 999999999999998888865  8899999


Q ss_pred             EecCCCCCCceeEec--ccCCCCCeEEEEecC--CCEEEEE-eCCCceEEEEeecCceeeEechhhHHHHHhhccccccc
Q 005656           74 IFDTTDGDPRLLRFR--SGHSAPPLCIRFYAN--GRHILSA-GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEE  148 (685)
Q Consensus        74 d~~~~~~~~~~~~~~--~~h~~~v~~i~~~~~--~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (685)
                      |.-.+    +++...  ....+.+..+...++  ...++.+ +...+|+++|.+......++..                
T Consensus       810 DPFig----r~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kV----------------  869 (1034)
T KOG4190|consen  810 DPFIG----RLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKV----------------  869 (1034)
T ss_pred             ccccc----chhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEe----------------
Confidence            86554    332211  112233344444444  3333333 6788999999877665444421                


Q ss_pred             cccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEE
Q 005656          149 LKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIER  228 (685)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~  228 (685)
                                                           .+          .+.....++++++-+.|+.+++|-++|.|.+
T Consensus       870 -------------------------------------cn----------a~~Pna~~R~iaVa~~GN~lAa~LSnGci~~  902 (1034)
T KOG4190|consen  870 -------------------------------------CN----------APGPNALTRAIAVADKGNKLAAALSNGCIAI  902 (1034)
T ss_pred             -------------------------------------cc----------CCCCchheeEEEeccCcchhhHHhcCCcEEE
Confidence                                                 10          0134566899999999999999999999999


Q ss_pred             EECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEE-EECCCCceEEEeecC-CceeEEEEeecCC
Q 005656          229 FNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV-WDFKGRDLKSRWEVG-CSLVKIVYHRVNG  306 (685)
Q Consensus       229 ~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~i-wd~~~~~~~~~~~~~-~~i~~~~~~~~~~  306 (685)
                      .|.++|..+....        .-.-....++ .|..+.++....|.++.+ |..-.+....+...+ .+..-+  ..-|.
T Consensus       903 LDaR~G~vINswr--------pmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppepahfl--qsvgp  971 (1034)
T KOG4190|consen  903 LDARNGKVINSWR--------PMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFL--QSVGP  971 (1034)
T ss_pred             EecCCCceeccCC--------cccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhh--hccCc
Confidence            9999998776553        1111222222 355667777778888888 887777665554432 221111  11245


Q ss_pred             EEEEEeCCCeEEEEEcCC----CeeEEEEe--cCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 005656          307 LLATVADDLVIRLFDVVA----LRMVRKFE--GHTDRITDFCFSEDGKWLLSSGMDGSLRI  361 (685)
Q Consensus       307 ~l~~~~~dg~I~i~d~~~----~~~~~~~~--~h~~~I~~l~~spdg~~l~s~s~Dg~I~i  361 (685)
                      -++++.....+.+|--..    ...+.+++  ...+..++++.-|-+.-+..|...|.|.+
T Consensus       972 SLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen  972 SLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred             eeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence            566666666677774211    01112222  24566788888887777777888888875

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.05  E-value=6.8e-07  Score=87.27  Aligned_cols=184  Identities=14%  Similarity=0.076  Sum_probs=124.7

Q ss_pred             eEEEEEc-cCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC--------Ce
Q 005656          205 VKACTIS-ACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH--------GD  275 (685)
Q Consensus       205 v~~~~~s-~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d--------g~  275 (685)
                      ...+++. ++ ..++++...+ +.++|+.++.........   .........+.++++++|++.++....        |.
T Consensus        42 ~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~~---~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~  116 (246)
T PF08450_consen   42 PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADLP---DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGS  116 (246)
T ss_dssp             EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEEE---TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEE
T ss_pred             CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeecc---CCCcccCCCceEEEcCCCCEEEEecCCCccccccccc
Confidence            5666777 55 5555555544 566699888654433210   001145678899999999977776543        56


Q ss_pred             EEEEECCCCceEEEeecCCceeEEEEeecCCEEE-EEeCCCeEEEEEcCCC-e------eEEEEecCCCCeEEEEEcCCC
Q 005656          276 IKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLA-TVADDLVIRLFDVVAL-R------MVRKFEGHTDRITDFCFSEDG  347 (685)
Q Consensus       276 i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~I~i~d~~~~-~------~~~~~~~h~~~I~~l~~spdg  347 (685)
                      |..++.. ++.......-...+.++|+|+++.|+ +-+..+.|..|++... .      .+..+....+..-.+++..+|
T Consensus       117 v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G  195 (246)
T PF08450_consen  117 VYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG  195 (246)
T ss_dssp             EEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS
T ss_pred             eEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC
Confidence            7788877 55554444446678999999999665 5566789999998632 1      122222233347889999999


Q ss_pred             CEEEEEeCCCcEEEEEcCCCceeeEEeec-cceEEEEE-cCCCCeEEEEE
Q 005656          348 KWLLSSGMDGSLRIWDVILARQIDAIHVD-VSITALSL-SPNMDVLATAH  395 (685)
Q Consensus       348 ~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~-~~v~~v~~-spdg~~Lat~~  395 (685)
                      ++.++....+.|.+++-. |+.+..+..+ ..+++++| .++.+.|++++
T Consensus       196 ~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  196 NLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             -EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred             CEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence            988887788999999966 9999999887 45999999 47777777765

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.04  E-value=7.8e-08  Score=87.84  Aligned_cols=258  Identities=9%  Similarity=0.038  Sum_probs=170.0

Q ss_pred             CCCcEEEEeCCCCe--eeEEeecccccCeeEEEEeC-----CCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCC
Q 005656           23 SSGVISIWNLEKRR--LQSVIREAHDNAIISLHFFA-----NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP   95 (685)
Q Consensus        23 ~dg~I~vwd~~~~~--~~~~~~~~h~~~V~~l~~sp-----~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v   95 (685)
                      ....+-+|++-+..  .+...        ..+.|.|     ...+|+.||.-|...+|...+.++.   +.....|...|
T Consensus        50 ~t~sv~i~~~y~N~~~iv~~y--------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h---~~~cd~snn~v  118 (344)
T KOG4532|consen   50 KTISVPINSHYSNPKGIVEFY--------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGH---LYQCDVSNNDV  118 (344)
T ss_pred             ceeeeEeccccCCchhhEEee--------ecccccchHhhccccEEEeccccceeeeecccCcccc---eeeecccccch
Confidence            34457777765543  22221        3455655     3348999999999999988876532   22333444444


Q ss_pred             eEEEEecC-CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEE
Q 005656           96 LCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH  174 (685)
Q Consensus        96 ~~i~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (685)
                      +-+.=.-+ .--+..++.|.+++++++..+......-                                           
T Consensus       119 ~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h-------------------------------------------  155 (344)
T KOG4532|consen  119 TLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVH-------------------------------------------  155 (344)
T ss_pred             hhhhhhcccccceeeccCCcceeEEEEecCcccceee-------------------------------------------
Confidence            33222222 2356778899999999886554322211                                           


Q ss_pred             cCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccc-cc-cccccccccCCCC
Q 005656          175 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR-GS-YLDMSERSNYAHN  252 (685)
Q Consensus       175 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~-~~-~~~~~~~~~~~h~  252 (685)
                                               ...-...+++++++++++++.+....|..|.+...... .. +.       ...+
T Consensus       156 -------------------------~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~-------a~t~  203 (344)
T KOG4532|consen  156 -------------------------NQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYE-------APTS  203 (344)
T ss_pred             -------------------------ccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEe-------cccC
Confidence                                     01123778999999999999999999999988754322 11 11       1334


Q ss_pred             cCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceE-EE-----eecCCceeEEEEeecCC--EEEEEeCCCeEEEEEcCC
Q 005656          253 GEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLK-SR-----WEVGCSLVKIVYHRVNG--LLATVADDLVIRLFDVVA  324 (685)
Q Consensus       253 ~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~-----~~~~~~i~~~~~~~~~~--~l~~~~~dg~I~i~d~~~  324 (685)
                      ..-.+..|+..+..+|++..||++.|||++..... ..     -.+.+.+..+.|++-|.  +|...-.-+.+.+.|+++
T Consensus       204 D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~  283 (344)
T KOG4532|consen  204 DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN  283 (344)
T ss_pred             CCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc
Confidence            45578889999999999999999999999864322 11     12348899999998665  666666667899999999


Q ss_pred             CeeEEEEe-------cCCCC-eEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005656          325 LRMVRKFE-------GHTDR-ITDFCFSEDGKWLLSSGMDGSLRIWDVILA  367 (685)
Q Consensus       325 ~~~~~~~~-------~h~~~-I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~  367 (685)
                      ++-.+.+.       .|... |..-.|+.++.-+.+.+.+. +.=|++.+.
T Consensus       284 ~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~-~ae~ni~sr  333 (344)
T KOG4532|consen  284 YVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQ-GAEYNILSR  333 (344)
T ss_pred             CceeeEEecCccccccccccccccccccCCCcccccccchh-hheeecccc
Confidence            86555443       23333 88888888887776666553 556766554

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.01  E-value=1.1e-08  Score=98.92  Aligned_cols=167  Identities=13%  Similarity=0.178  Sum_probs=120.8

Q ss_pred             eeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEe---ecCc
Q 005656           49 IISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV---IQDQ  125 (685)
Q Consensus        49 V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~---~~~~  125 (685)
                      ...+..+++++++|.+..+....++++.......+++... .-....+++.|..+...+..+..-|-+.-+|+   ..+.
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~  143 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR  143 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence            3445667888899998888887788877654333444333 23344566777766666665554444444443   2221


Q ss_pred             eeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCe
Q 005656          126 QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAV  205 (685)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v  205 (685)
                      ..                                                                     +..+|-+-+
T Consensus       144 ~~---------------------------------------------------------------------~~lGhvSml  154 (390)
T KOG3914|consen  144 CE---------------------------------------------------------------------PILGHVSML  154 (390)
T ss_pred             cc---------------------------------------------------------------------hhhhhhhhh
Confidence            11                                                                     112778889


Q ss_pred             EEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Q 005656          206 KACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD  285 (685)
Q Consensus       206 ~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~  285 (685)
                      +.++++||+++++++..|+.|++-....-..+..+.-       +|+.-|..++.-++ +.|+++|.|++|++||+.+++
T Consensus       155 ~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl-------GH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk  226 (390)
T KOG3914|consen  155 LDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL-------GHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGK  226 (390)
T ss_pred             heeeecCCCCEEEEecCCceEEEEecCcccchhhhcc-------ccHhheeeeeeccC-ceeeecCCCCcEEEEecccCC
Confidence            9999999999999999999999998877666666542       89999999999764 558999999999999999999


Q ss_pred             eEEEeecC
Q 005656          286 LKSRWEVG  293 (685)
Q Consensus       286 ~~~~~~~~  293 (685)
                      .+.++...
T Consensus       227 ~L~t~dl~  234 (390)
T KOG3914|consen  227 LLDTCDLS  234 (390)
T ss_pred             cccccchh
Confidence            88776654

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.01  E-value=2.9e-09  Score=102.77  Aligned_cols=166  Identities=16%  Similarity=0.234  Sum_probs=120.5

Q ss_pred             eEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEE---EECCCeEEEEEC
Q 005656          205 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS---AGYHGDIKVWDF  281 (685)
Q Consensus       205 v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s---~s~dg~i~iwd~  281 (685)
                      ...+..++.+++++++..+....+++.........+...     ..-...-+.+.+..+...+..   .+....+.+|..
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~-----~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~  139 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDV-----SCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSA  139 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeE-----eecccCcceeeeeeccceEEEEeecCCceeeeeecc
Confidence            445667889999999999998888887665442222110     011122233333333333333   344556667776


Q ss_pred             CCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEE-ecCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 005656          282 KGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKF-EGHTDRITDFCFSEDGKWLLSSGMDGSLR  360 (685)
Q Consensus       282 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~-~~h~~~I~~l~~spdg~~l~s~s~Dg~I~  360 (685)
                      ..+.....+.|-+.++.++++||+++++++..|..|+|-.....-.+..| -||..-|..++.-++ ..|++||.|++|+
T Consensus       140 ~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr  218 (390)
T KOG3914|consen  140 DSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLR  218 (390)
T ss_pred             cccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEE
Confidence            66777777777799999999999999999999999999887766666655 479999999999865 4689999999999


Q ss_pred             EEEcCCCceeeEEeec
Q 005656          361 IWDVILARQIDAIHVD  376 (685)
Q Consensus       361 iwd~~~~~~i~~~~~~  376 (685)
                      +||+.+|++++++...
T Consensus       219 ~Wd~~sgk~L~t~dl~  234 (390)
T KOG3914|consen  219 LWDITSGKLLDTCDLS  234 (390)
T ss_pred             EEecccCCcccccchh
Confidence            9999999999877643

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.00  E-value=2.8e-07  Score=85.87  Aligned_cols=242  Identities=12%  Similarity=0.184  Sum_probs=130.4

Q ss_pred             EEEeCCCcEEEEecCCCcEEEEEecCCCCCCcee---EecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceee
Q 005656           52 LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL---RFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR  128 (685)
Q Consensus        52 l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~---~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~  128 (685)
                      ++.+.+|++||.. .|..|.|=.....-.  .++   ...+.....=..++|+||+..|+.+...|+|+++|+..... .
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~--si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f   78 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFS--SIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-F   78 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCch--heeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccccee-E
Confidence            5567788877765 466666653322211  111   12222233447899999999999999999999999865332 2


Q ss_pred             EechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEE
Q 005656          129 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKAC  208 (685)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~  208 (685)
                      .+....                     .+      ..                                  .....|..+
T Consensus        79 ~I~p~~---------------------~~------~~----------------------------------d~~~Aiagl   97 (282)
T PF15492_consen   79 VIPPAM---------------------SF------PG----------------------------------DLSDAIAGL   97 (282)
T ss_pred             EcCccc---------------------cc------CC----------------------------------ccccceeee
Confidence            222100                     00      00                                  011222333


Q ss_pred             EEccC------CCEEEEEecCCcEEEEECCCC-----ccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCe--
Q 005656          209 TISAC------GNFAVLGTAGGWIERFNLQSG-----ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD--  275 (685)
Q Consensus       209 ~~s~~------g~~l~~g~~dg~i~~~d~~~~-----~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~--  275 (685)
                      .|.+.      ...|++-...|.++-|-+..+     +....+.     ....+...|.++.++|..++|+.||....  
T Consensus        98 ~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfs-----f~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~  172 (282)
T PF15492_consen   98 IFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFS-----FSSHYPHGINSAVYHPKHRLLLVGGCEQNQD  172 (282)
T ss_pred             EeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEE-----ecccCCCceeEEEEcCCCCEEEEeccCCCCC
Confidence            32221      123555555666666654322     1112221     11145678999999999998888764321  


Q ss_pred             ---------EEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCC
Q 005656          276 ---------IKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSED  346 (685)
Q Consensus       276 ---------i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spd  346 (685)
                               +..|.+-++.+         -.......+...-....   +-.+|.+-+.+...........|..|..|||
T Consensus       173 ~~s~a~~~GLtaWRiL~~~P---------yyk~v~~~~~~~~~~~~---~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPd  240 (282)
T PF15492_consen  173 GMSKASSCGLTAWRILSDSP---------YYKQVTSSEDDITASSK---RRGLLRIPSFKFFSRQGQEQDGIFKMSLSPD  240 (282)
T ss_pred             ccccccccCceEEEEcCCCC---------cEEEccccCcccccccc---ccceeeccceeeeeccccCCCceEEEEECCC
Confidence                     22222222111         11111111111111111   1123333332222222234567999999999


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCceeeEEee
Q 005656          347 GKWLLSSGMDGSLRIWDVILARQIDAIHV  375 (685)
Q Consensus       347 g~~l~s~s~Dg~I~iwd~~~~~~i~~~~~  375 (685)
                      |..||+...+|.|.+|++++-++...+..
T Consensus       241 g~~La~ih~sG~lsLW~iPsL~~~~~W~~  269 (282)
T PF15492_consen  241 GSLLACIHFSGSLSLWEIPSLRLQRSWKQ  269 (282)
T ss_pred             CCEEEEEEcCCeEEEEecCcchhhcccch
Confidence            99999999999999999999887776654

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.96  E-value=1.9e-07  Score=85.44  Aligned_cols=222  Identities=11%  Similarity=0.055  Sum_probs=149.0

Q ss_pred             EEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCC-CcEEEEecCCCcEEEEEecCCCCCCceeEecccCCC--
Q 005656           17 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN-EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSA--   93 (685)
Q Consensus        17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~--   93 (685)
                      +||.|+..|...+|...+.+....+-..|...|+-+.=.-+ .--+..++.|.++++.+++.+.....      .|..  
T Consensus        86 ~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~------~h~~~~  159 (344)
T KOG4532|consen   86 TLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFA------VHNQNL  159 (344)
T ss_pred             EEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccce------eecccc
Confidence            78999999999999998766544443355554443322222 22566678899999999887643221      2333  


Q ss_pred             CCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEE
Q 005656           94 PPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTC  173 (685)
Q Consensus        94 ~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (685)
                      .+.++.+++|++++++.+....|..|.+........-.                                          
T Consensus       160 ~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~------------------------------------------  197 (344)
T KOG4532|consen  160 TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENI------------------------------------------  197 (344)
T ss_pred             ceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeee------------------------------------------
Confidence            37889999999999999999999999886543211100                                          


Q ss_pred             EcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCc
Q 005656          174 HMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNG  253 (685)
Q Consensus       174 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~  253 (685)
                                             ........--+..|+.....+++++.||.+.+||++...........   ....|.+
T Consensus       198 -----------------------~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ss---trp~hnG  251 (344)
T KOG4532|consen  198 -----------------------YEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISS---TRPHHNG  251 (344)
T ss_pred             -----------------------EecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcc---cCCCCCC
Confidence                                   00022344557789999999999999999999999876554433221   2236999


Q ss_pred             CEEEEEEcCCC--CEEEEEECCCeEEEEECCCCceEEEeecC---------CceeEEEEeecCCEEEEEe
Q 005656          254 EVVGVACDSTN--TLMISAGYHGDIKVWDFKGRDLKSRWEVG---------CSLVKIVYHRVNGLLATVA  312 (685)
Q Consensus       254 ~v~~l~~~~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---------~~i~~~~~~~~~~~l~~~~  312 (685)
                      .++.+.|++.|  .+|+..-.-+.+.+.|+++++-.+.+...         ..|....|+.++.-+.+..
T Consensus       252 a~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~  321 (344)
T KOG4532|consen  252 AFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKN  321 (344)
T ss_pred             ceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCccccccc
Confidence            99999999866  34555555688999999988765554332         1245555555555444443

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.90  E-value=6.8e-08  Score=87.86  Aligned_cols=256  Identities=18%  Similarity=0.198  Sum_probs=146.9

Q ss_pred             EEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEE------------eecccccCeeEEEEeCCCcEEEEecCCCcEEE
Q 005656            5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSV------------IREAHDNAIISLHFFANEPVLMSASADNSIKM   72 (685)
Q Consensus         5 V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~------------~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~i   72 (685)
                      |+.+.|+.+-  .|+++..++.+.......+.++..            +. .|.++-.+-+.+--+..++++..||.+.+
T Consensus        39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a-~~sep~p~~~~s~~~t~V~~~~~dg~~~v  115 (319)
T KOG4714|consen   39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLA-KNSEIDPNDACTMTDNRVCIGYADGSLAV  115 (319)
T ss_pred             EEEeechhhh--eeecccchhheeeeccceEEEechhhcccCcCceeeee-ccCCCCCcccccccCCceEecCCCceEEE
Confidence            6777777654  588888888777776555444322            22 34333333333445678999999999999


Q ss_pred             EEecCCCCCCceeEecc-cCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccccccccc
Q 005656           73 WIFDTTDGDPRLLRFRS-GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL  151 (685)
Q Consensus        73 Wd~~~~~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (685)
                      .+.+..-   +..+... .|.+ -.+.++...++.+.+++    +-.|+.....                          
T Consensus       116 ~s~~~~~---~~~~~i~~~~~~-~as~~~~~~~~~i~s~~----~g~~n~~d~~--------------------------  161 (319)
T KOG4714|consen  116 FSTDKDL---ALMSRIPSIHSG-SASRKICRHGNSILSGG----CGNWNAQDNF--------------------------  161 (319)
T ss_pred             EechHHH---hhhhhccccccc-ccccceeecccEEecCC----cceEeeccce--------------------------
Confidence            9776421   1111111 1211 12233333455554432    3333332221                          


Q ss_pred             CceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccC-CCEEEEEecCCcEEEEE
Q 005656          152 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC-GNFAVLGTAGGWIERFN  230 (685)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~dg~i~~~d  230 (685)
                                                   +.|+++....    +.+.......|++++-+|. .+.+++|+.+|.+.+||
T Consensus       162 -----------------------------~a~~~~p~~t----~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d  208 (319)
T KOG4714|consen  162 -----------------------------YANTLDPIKT----LIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWD  208 (319)
T ss_pred             -----------------------------eeeccccccc----ccccccccccchhhhCCcccccEEEEecCCCeEEEEE
Confidence                                         1222221111    1111122334888999985 45678899999999999


Q ss_pred             CCCCccccccccccccccCCCCcCEEEEEEcCC-CCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEE
Q 005656          231 LQSGISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLA  309 (685)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  309 (685)
                      ++.......+.       ..|+.+++.+-|+|. +..|++++.||.+..||..+.                      .|.
T Consensus       209 ~rn~~~p~S~l-------~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~----------------------~l~  259 (319)
T KOG4714|consen  209 ARNVAMPVSLL-------KAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTT----------------------FLS  259 (319)
T ss_pred             cccccchHHHH-------HHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCc----------------------eEE
Confidence            99886555543       389999999999995 478999999999999997751                      111


Q ss_pred             EEeCCCeEEEEEcCCCeeEEE-------EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005656          310 TVADDLVIRLFDVVALRMVRK-------FEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD  363 (685)
Q Consensus       310 ~~~~dg~I~i~d~~~~~~~~~-------~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd  363 (685)
                      ++.....+..|=  ++.+++.       +..-...|+.+..  -|..|++|+.-+.|++++
T Consensus       260 i~~~~s~~s~WL--sgD~v~s~i~i~~ll~~~~~SinsfDV--~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  260 ISNQASVISSWL--SGDPVKSRIEITSLLPSRSLSINSFDV--LGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             ecCccccccccc--cCCcccceEeeeccccccceeeeeeec--cCceEEeccccceEEEec
Confidence            111112233331  1111111       1112233555444  678899999888898875

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.87  E-value=4.7e-08  Score=90.98  Aligned_cols=293  Identities=12%  Similarity=0.183  Sum_probs=174.0

Q ss_pred             cccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCC-CCCceeEecccCC------------CCCeEEEEecCC--CEEEE
Q 005656           45 HDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD-GDPRLLRFRSGHS------------APPLCIRFYANG--RHILS  109 (685)
Q Consensus        45 h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~-~~~~~~~~~~~h~------------~~v~~i~~~~~~--~~l~s  109 (685)
                      ....|+++.|...|.+|++|...|.|.++.-.... ...+.+..+++|.            ..|..|.|..++  ..++.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            35679999999999999999999999999644332 2234444556664            357888888763  36777


Q ss_pred             EeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccc-ccccCCcceEEEEcCCceEEEEEcCcc
Q 005656          110 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE-IRERDWCNVVTCHMDTAQAYVWRLQNF  188 (685)
Q Consensus       110 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~w~~~~~  188 (685)
                      .+.|.+|++|.+..... +...+..+....       ....-.|++....-. .|-.....++++..             
T Consensus       105 stNdktiKlWKiyeknl-k~va~nnls~~~-------~~~~~g~~~s~~~l~lprls~hd~iiaa~p-------------  163 (460)
T COG5170         105 STNDKTIKLWKIYEKNL-KVVAENNLSDSF-------HSPMGGPLTSTKELLLPRLSEHDEIIAAKP-------------  163 (460)
T ss_pred             ecCCceeeeeeeecccc-hhhhcccccccc-------ccccCCCcCCHHHhhcccccccceEEEecc-------------
Confidence            78899999999865422 111111111000       000000111000000 00011111111110             


Q ss_pred             ccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCC-CEE
Q 005656          189 VLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLM  267 (685)
Q Consensus       189 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l  267 (685)
                           .......|+..+.++.+..+...++++ .+-.|.+|++.-......+..........-..-|++..|+|.. ..+
T Consensus       164 -----~rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~f  237 (460)
T COG5170         164 -----CRVYANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVF  237 (460)
T ss_pred             -----ceeccccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceE
Confidence                 000112667788999999988877765 4567889987643332222211100000112357888898864 556


Q ss_pred             EEEECCCeEEEEECCCCceE------E--Ee---ec------CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCC-eeEE
Q 005656          268 ISAGYHGDIKVWDFKGRDLK------S--RW---EV------GCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-RMVR  329 (685)
Q Consensus       268 ~s~s~dg~i~iwd~~~~~~~------~--~~---~~------~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~-~~~~  329 (685)
                      ..++..|.|++-|++...+-      .  ++   .+      -..|..+.|+++|+++++-.. .+|+|||+... .++.
T Consensus       238 mYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pik  316 (460)
T COG5170         238 MYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIK  316 (460)
T ss_pred             EEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCce
Confidence            66777899999999843211      0  11   11      167889999999999887643 58999999754 5677


Q ss_pred             EEecCC------------CCe---EEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005656          330 KFEGHT------------DRI---TDFCFSEDGKWLLSSGMDGSLRIWDVI  365 (685)
Q Consensus       330 ~~~~h~------------~~I---~~l~~spdg~~l~s~s~Dg~I~iwd~~  365 (685)
                      ++.-|.            ..|   ..+.||.|.+.+.+|+..+..-+|-..
T Consensus       317 Ti~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         317 TIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             eechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence            765443            223   347889999999999988887777643

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.87  E-value=1.2e-07  Score=99.58  Aligned_cols=109  Identities=16%  Similarity=0.173  Sum_probs=86.1

Q ss_pred             EEEEccCCCCEEEEEe----CCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCC
Q 005656            7 ALAFSSDGQPLLASGA----SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP   82 (685)
Q Consensus         7 ~l~fspdg~~~latg~----~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~   82 (685)
                      -.+|+|... ++|+++    ..|+|.||- ++|++.....  -.-.+++++|+|..-.|+.|-.-|.+.+|...+.    
T Consensus        20 i~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt--~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~----   91 (1416)
T KOG3617|consen   20 ISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVT--YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTT----   91 (1416)
T ss_pred             ccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCcccc--cceehhhhccChHHHHHhhccccceeEEEecCCc----
Confidence            457999877 898876    568999984 5555433322  1223567999999889999989999999976654    


Q ss_pred             ceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeec
Q 005656           83 RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ  123 (685)
Q Consensus        83 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~  123 (685)
                      +.......|..+|..+.|+++|..++++..-|.+.+|....
T Consensus        92 e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   92 ETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             eeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence            44555668999999999999999999999999999998763

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.87  E-value=1.2e-06  Score=85.09  Aligned_cols=231  Identities=12%  Similarity=0.059  Sum_probs=141.0

Q ss_pred             CCcEEEEeCCCCeeeEEeeccc-ccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEec
Q 005656           24 SGVISIWNLEKRRLQSVIREAH-DNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA  102 (685)
Q Consensus        24 dg~I~vwd~~~~~~~~~~~~~h-~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~  102 (685)
                      +|.|..||..+|+.+.....+. .....+. ..+++..+++++.++.+..||..++    +.+..... ..++.... ..
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG----~~~W~~~~-~~~~~~~~-~~   74 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTG----KVLWRFDL-PGPISGAP-VV   74 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTS----EEEEEEEC-SSCGGSGE-EE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCC----CEEEEeec-ccccccee-ee
Confidence            6889999999999988876221 1222211 3335667777788999999998777    44433332 22222212 22


Q ss_pred             CCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEE
Q 005656          103 NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYV  182 (685)
Q Consensus       103 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (685)
                      ++..++.++.++.+..+|..+++.........                                                
T Consensus        75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~------------------------------------------------  106 (238)
T PF13360_consen   75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTS------------------------------------------------  106 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSCEEEEEEE-S------------------------------------------------
T ss_pred             cccccccccceeeeEecccCCcceeeeecccc------------------------------------------------
Confidence            45567777788899999988887655521000                                                


Q ss_pred             EEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCC---CCcCEEEEE
Q 005656          183 WRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYA---HNGEVVGVA  259 (685)
Q Consensus       183 w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~---h~~~v~~l~  259 (685)
                                     .+... ..........++.++++..+|.|..+|+.+|+.+..+...... ...   ....+.+-.
T Consensus       107 ---------------~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~-~~~~~~~~~~~~~~~  169 (238)
T PF13360_consen  107 ---------------SPPAG-VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR-GSSPISSFSDINGSP  169 (238)
T ss_dssp             ---------------SCTCS-TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT--SS--EEEETTEEEEE
T ss_pred             ---------------ccccc-cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCC-CCcceeeecccccce
Confidence                           00000 1112222233888999999999999999999987766421100 000   011122333


Q ss_pred             EcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEE
Q 005656          260 CDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR  329 (685)
Q Consensus       260 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~  329 (685)
                      +..++ .++.++.++.+..+|+.+++.+.... ...+.. .....+..+++++.++.+..||+.+|+.+-
T Consensus       170 ~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W  236 (238)
T PF13360_consen  170 VISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVW  236 (238)
T ss_dssp             ECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred             EEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence            33344 67777777754444999998665433 222222 245678888888899999999999998764

...

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.85  E-value=5.1e-06  Score=81.11  Aligned_cols=220  Identities=15%  Similarity=0.120  Sum_probs=141.9

Q ss_pred             EEEEeC-CCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEe-cCCCEEEEEeCCCceEEEEeecCceee
Q 005656           51 SLHFFA-NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY-ANGRHILSAGQDRAFRLFSVIQDQQSR  128 (685)
Q Consensus        51 ~l~~sp-~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~-~~~~~l~s~s~dg~i~vwd~~~~~~~~  128 (685)
                      ++.|.+ ++.++++--..+.|..|+...+    .... ... .. ...+.+. +++ .++.+...+ +.++|..+++...
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~----~~~~-~~~-~~-~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~   74 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTG----EVEV-IDL-PG-PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTV   74 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTT----EEEE-EES-SS-EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCC----eEEE-Eec-CC-CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEE
Confidence            578888 7777777777888998887665    2221 111 11 6778888 565 555555544 5566876664332


Q ss_pred             EechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEE
Q 005656          129 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKAC  208 (685)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~  208 (685)
                      .....                                                               ...........+
T Consensus        75 ~~~~~---------------------------------------------------------------~~~~~~~~~ND~   91 (246)
T PF08450_consen   75 LADLP---------------------------------------------------------------DGGVPFNRPNDV   91 (246)
T ss_dssp             EEEEE---------------------------------------------------------------TTCSCTEEEEEE
T ss_pred             Eeecc---------------------------------------------------------------CCCcccCCCceE
Confidence            22100                                                               000134557789


Q ss_pred             EEccCCCEEEEEecC--------CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEE-EEECCCeEEEE
Q 005656          209 TISACGNFAVLGTAG--------GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMI-SAGYHGDIKVW  279 (685)
Q Consensus       209 ~~s~~g~~l~~g~~d--------g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~s~dg~i~iw  279 (685)
                      ++.++|++.++....        |.|+.++.. ++.....         ..-...++++|+|+++.|+ +-+..+.|..+
T Consensus        92 ~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~---------~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~  161 (246)
T PF08450_consen   92 AVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA---------DGLGFPNGIAFSPDGKTLYVADSFNGRIWRF  161 (246)
T ss_dssp             EE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE---------EEESSEEEEEEETTSSEEEEEETTTTEEEEE
T ss_pred             EEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe---------cCcccccceEECCcchheeecccccceeEEE
Confidence            999999966655433        568888887 4433322         2345578999999998776 45577889999


Q ss_pred             ECCCCc--eE--EEe-ecC---CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEc-CCCCEE
Q 005656          280 DFKGRD--LK--SRW-EVG---CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFS-EDGKWL  350 (685)
Q Consensus       280 d~~~~~--~~--~~~-~~~---~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~s-pdg~~l  350 (685)
                      ++....  ..  ..+ ...   ...-.+++..+|++.++....+.|.++|.+ |+.+..+.-....+++++|. ++.+.|
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L  240 (246)
T PF08450_consen  162 DLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTL  240 (246)
T ss_dssp             EEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEE
T ss_pred             eccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEE
Confidence            986322  11  112 222   247789999999988888889999999988 88888887666689999994 676665


Q ss_pred             EEE
Q 005656          351 LSS  353 (685)
Q Consensus       351 ~s~  353 (685)
                      +..
T Consensus       241 ~vT  243 (246)
T PF08450_consen  241 YVT  243 (246)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            544

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.85  E-value=8.5e-07  Score=93.25  Aligned_cols=123  Identities=12%  Similarity=0.051  Sum_probs=92.9

Q ss_pred             CCeEEEEECCC-----CceEEEeecCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCee------------EEEEecC
Q 005656          273 HGDIKVWDFKG-----RDLKSRWEVGCSLVKIVYHRVNGLLATVAD-DLVIRLFDVVALRM------------VRKFEGH  334 (685)
Q Consensus       273 dg~i~iwd~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~I~i~d~~~~~~------------~~~~~~h  334 (685)
                      ++.|.+.|..+     ......+..+.....+.++|||+++++++. +++|.|+|+.+.+.            +.+..--
T Consensus       295 gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG  374 (635)
T PRK02888        295 GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG  374 (635)
T ss_pred             CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccC
Confidence            46789999887     567777888888999999999997776654 88999999988552            4444433


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC----------CceeeEEeeccceEEEEE------cCCCCeEEEEEe
Q 005656          335 TDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL----------ARQIDAIHVDVSITALSL------SPNMDVLATAHV  396 (685)
Q Consensus       335 ~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~----------~~~i~~~~~~~~v~~v~~------spdg~~Lat~~~  396 (685)
                      .+ ....+|.++|....|..-|..|..|++..          ...++.+..+..+-.+.-      .|||+||++...
T Consensus       375 lG-PLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk  451 (635)
T PRK02888        375 LG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK  451 (635)
T ss_pred             CC-cceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence            33 34678999998888888999999999986          345555655555444444      789999998853

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.83  E-value=5.8e-06  Score=77.25  Aligned_cols=245  Identities=16%  Similarity=0.176  Sum_probs=140.2

Q ss_pred             EEEEccCCCCEEEEEeCCCcEEEEeCCCC--eeeEEee--cccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCC
Q 005656            7 ALAFSSDGQPLLASGASSGVISIWNLEKR--RLQSVIR--EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP   82 (685)
Q Consensus         7 ~l~fspdg~~~latg~~dg~I~vwd~~~~--~~~~~~~--~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~   82 (685)
                      .++.+.||+ +||+- .|..|.|-..+..  ..+...+  ....-.=+-++||||+.+||.+...|+|+++|+...    
T Consensus         2 ~~~~~~~Gk-~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~----   75 (282)
T PF15492_consen    2 HLALSSDGK-LLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS----   75 (282)
T ss_pred             ceeecCCCc-EEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc----
Confidence            367789999 77764 5777888765542  2223222  122234578999999999999999999999998653    


Q ss_pred             ceeEec------ccCCCCCeEEEEecC------CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccc
Q 005656           83 RLLRFR------SGHSAPPLCIRFYAN------GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELK  150 (685)
Q Consensus        83 ~~~~~~------~~h~~~v~~i~~~~~------~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (685)
                      .+...-      ..-...|..+.|.+.      ...|+....+|.++-|-+..+.... +                    
T Consensus        76 ~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~-y--------------------  134 (282)
T PF15492_consen   76 ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQG-Y--------------------  134 (282)
T ss_pred             eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCc-c--------------------
Confidence            121111      112345666666542      2246666677777766653221000 0                    


Q ss_pred             cCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEE
Q 005656          151 LKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFN  230 (685)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d  230 (685)
                                                             ...+.+......+..|.++.++|.-+.|++|+....     
T Consensus       135 ---------------------------------------~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~-----  170 (282)
T PF15492_consen  135 ---------------------------------------QENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN-----  170 (282)
T ss_pred             ---------------------------------------eeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC-----
Confidence                                                   000111111145778999999999999888765422     


Q ss_pred             CCCCccccccccccccccCCCCcCEEEEEEcCCCCE--EEEEECCC------eEEEEECCCCceEEE-eecCCceeEEEE
Q 005656          231 LQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTL--MISAGYHG------DIKVWDFKGRDLKSR-WEVGCSLVKIVY  301 (685)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~--l~s~s~dg------~i~iwd~~~~~~~~~-~~~~~~i~~~~~  301 (685)
                       +.+..            .+....+++-.+-.+..+  .++...|+      +..+|.+-+.+.... ......|..|..
T Consensus       171 -~~~~s------------~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSl  237 (282)
T PF15492_consen  171 -QDGMS------------KASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSL  237 (282)
T ss_pred             -CCccc------------cccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEE
Confidence             00000            011122222222111111  11222121      123344333222211 223478999999


Q ss_pred             eecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCC
Q 005656          302 HRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT  335 (685)
Q Consensus       302 ~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~  335 (685)
                      +|||..||+...+|.|.+|++.+-++.+.+..+.
T Consensus       238 SPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~e  271 (282)
T PF15492_consen  238 SPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDE  271 (282)
T ss_pred             CCCCCEEEEEEcCCeEEEEecCcchhhcccchhh
Confidence            9999999999999999999999988877776443

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=1.3e-07  Score=92.46  Aligned_cols=257  Identities=14%  Similarity=0.100  Sum_probs=172.7

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCC---CeeeEEeecccccCeeEEEEeCCCcEEEEecC-CCcEEEEEec
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEK---RRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFD   76 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~---~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~-D~~v~iWd~~   76 (685)
                      |++-|+.+.-+.. + ++.+++.||.++.|.-..   -+.+..++ .|.+.|.+++.+-++.++.|.+. |..++++|+.
T Consensus         8 hrd~i~hv~~tka-~-fiiqASlDGh~KFWkKs~isGvEfVKhFr-aHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE   84 (558)
T KOG0882|consen    8 HRDVITHVFPTKA-K-FIIQASLDGHKKFWKKSRISGVEFVKHFR-AHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVE   84 (558)
T ss_pred             ccceeeeEeeehh-h-eEEeeecchhhhhcCCCCccceeehhhhH-HHHHHHHhhhccccceeEeeccCcccceeEEEee
Confidence            7778888866653 4 899999999999997543   23344444 89999999999999999999777 9999999987


Q ss_pred             CCCCCCceeEecccCCCCCeEEEEec-CC--C-EEE-EEeCCCceEEEEeecCceeeEechhhHHHHHhhcccccccccc
Q 005656           77 TTDGDPRLLRFRSGHSAPPLCIRFYA-NG--R-HIL-SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL  151 (685)
Q Consensus        77 ~~~~~~~~~~~~~~h~~~v~~i~~~~-~~--~-~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (685)
                      .-+-.. .++    -...+..+.|.. .|  . .++ +.-.+|.+.++|-..+.+....                     
T Consensus        85 n~Dmin-miK----L~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~---------------------  138 (558)
T KOG0882|consen   85 NFDMIN-MIK----LVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGY---------------------  138 (558)
T ss_pred             ccchhh-hcc----cccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccce---------------------
Confidence            653210 011    111122233322 22  1 222 3334677888875443321111                     


Q ss_pred             CceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEEC
Q 005656          152 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL  231 (685)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~  231 (685)
                                                                   ....|..+|.++-+++.+..+++....|.|.-|..
T Consensus       139 ---------------------------------------------fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~  173 (558)
T KOG0882|consen  139 ---------------------------------------------FKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSA  173 (558)
T ss_pred             ---------------------------------------------ecccccCceEEEEeeccccceeeccccceeEeecC
Confidence                                                         01156789999999999999999999999999987


Q ss_pred             CC-Cc-----ccccccc-ccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec------------
Q 005656          232 QS-GI-----SRGSYLD-MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV------------  292 (685)
Q Consensus       232 ~~-~~-----~~~~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~------------  292 (685)
                      .. -+     ....+.. ..............++.|+|++..+.+-+.|..|++++++++++++.+.-            
T Consensus       174 e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~  253 (558)
T KOG0882|consen  174 EGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSP  253 (558)
T ss_pred             CCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccc
Confidence            73 11     1111100 00001113345678999999999999999999999999999876654321            


Q ss_pred             ----------------------CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEe
Q 005656          293 ----------------------GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE  332 (685)
Q Consensus       293 ----------------------~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~  332 (685)
                                            ....+.+.|...|++|+.|+-=| |++.++.++++++.+-
T Consensus       254 y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g  314 (558)
T KOG0882|consen  254 YGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG  314 (558)
T ss_pred             cccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence                                  02235567777888888877544 8899999998888764

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.81  E-value=2.3e-06  Score=89.86  Aligned_cols=262  Identities=12%  Similarity=0.043  Sum_probs=155.3

Q ss_pred             EEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeE-EEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCC
Q 005656           17 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP   95 (685)
Q Consensus        17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~-l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v   95 (685)
                      .++.++.+|.+..+|.++|+.+.... .. +.+.+ ....  +..++.++.++.+.-+|..++.    .+-..... .+.
T Consensus       122 ~v~v~~~~g~l~ald~~tG~~~W~~~-~~-~~~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~----~~W~~~~~-~~~  192 (394)
T PRK11138        122 KVYIGSEKGQVYALNAEDGEVAWQTK-VA-GEALSRPVVS--DGLVLVHTSNGMLQALNESDGA----VKWTVNLD-VPS  192 (394)
T ss_pred             EEEEEcCCCEEEEEECCCCCCccccc-CC-CceecCCEEE--CCEEEEECCCCEEEEEEccCCC----EeeeecCC-CCc
Confidence            46677788999999999999887765 22 22222 1121  3456667778888888887773    32222111 110


Q ss_pred             eEE--EEec--CCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceE
Q 005656           96 LCI--RFYA--NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVV  171 (685)
Q Consensus        96 ~~i--~~~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (685)
                      ..+  .-+|  .+..++.++.+|.+..+|..+++..........                                    
T Consensus       193 ~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~------------------------------------  236 (394)
T PRK11138        193 LTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQP------------------------------------  236 (394)
T ss_pred             ccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccC------------------------------------
Confidence            000  0011  123567777889898888877765433210000                                    


Q ss_pred             EEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEcc--CCCEEEEEecCCcEEEEECCCCccccccccccccccC
Q 005656          172 TCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA--CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNY  249 (685)
Q Consensus       172 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~  249 (685)
                                        .+.       ........+..+|  .+..+++++.+|.++.+|..+|+.+.....       
T Consensus       237 ------------------~~~-------~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~-------  284 (394)
T PRK11138        237 ------------------TGA-------TEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY-------  284 (394)
T ss_pred             ------------------CCc-------cchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC-------
Confidence                              000       0000000000111  256777888899999999999987654321       


Q ss_pred             CCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec--CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCee
Q 005656          250 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV--GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM  327 (685)
Q Consensus       250 ~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~  327 (685)
                      +.   ...+..  .+..++.++.+|.+..+|..+++.+.....  .........  .+..+++++.+|.++.+|..+|+.
T Consensus       285 ~~---~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~  357 (394)
T PRK11138        285 GS---VNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRF  357 (394)
T ss_pred             CC---ccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCE
Confidence            11   111222  355677888899999999999987665432  111222222  266788899999999999999998


Q ss_pred             EEEEecCCCCeEE-EEEcCCCCEEEEEeCCCcEEEEEc
Q 005656          328 VRKFEGHTDRITD-FCFSEDGKWLLSSGMDGSLRIWDV  364 (685)
Q Consensus       328 ~~~~~~h~~~I~~-l~~spdg~~l~s~s~Dg~I~iwd~  364 (685)
                      +...+-....+.. ..+  .+..|+.++.||.|+.++.
T Consensus       358 ~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        358 VAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             EEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence            8877644333322 222  3447888899999988875

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.81  E-value=3.7e-06  Score=81.76  Aligned_cols=150  Identities=17%  Similarity=0.077  Sum_probs=98.1

Q ss_pred             CCCEEEEEecCCcEEEEECCCCcccccc-ccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEee
Q 005656          213 CGNFAVLGTAGGWIERFNLQSGISRGSY-LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE  291 (685)
Q Consensus       213 ~g~~l~~g~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  291 (685)
                      .+..+++++.++.++.+|..+|+..... .... .   ... ..........+..++.+..++.|..+|.++|+.+....
T Consensus        75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~-~---~~~-~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~  149 (238)
T PF13360_consen   75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSS-P---PAG-VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYP  149 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SS-C---TCS-TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEE
T ss_pred             cccccccccceeeeEecccCCcceeeeeccccc-c---ccc-cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEee
Confidence            4567777888889999999999988773 2110 0   111 11122222237788888889999999999999988776


Q ss_pred             cCCce-----------eEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 005656          292 VGCSL-----------VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLR  360 (685)
Q Consensus       292 ~~~~i-----------~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~  360 (685)
                      ...+-           ..-....++ .++++..++.+.-+|+.+++.+....  ...+.. ....++..|+.++.++.|.
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~  225 (238)
T PF13360_consen  150 VGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLY  225 (238)
T ss_dssp             SSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEE
T ss_pred             cCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEE
Confidence            64211           122222234 77777777754444999998664333  222333 1456778888888999999


Q ss_pred             EEEcCCCceee
Q 005656          361 IWDVILARQID  371 (685)
Q Consensus       361 iwd~~~~~~i~  371 (685)
                      .||+.+|+.+-
T Consensus       226 ~~d~~tG~~~W  236 (238)
T PF13360_consen  226 ALDLKTGKVVW  236 (238)
T ss_dssp             EEETTTTEEEE
T ss_pred             EEECCCCCEEe
Confidence            99999998764

...

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.80  E-value=5.1e-06  Score=81.06  Aligned_cols=270  Identities=13%  Similarity=0.197  Sum_probs=160.0

Q ss_pred             CcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecC----------CCcEEEEEecCCCCCCceeEecccC---
Q 005656           25 GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA----------DNSIKMWIFDTTDGDPRLLRFRSGH---   91 (685)
Q Consensus        25 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~----------D~~v~iWd~~~~~~~~~~~~~~~~h---   91 (685)
                      +.+.|+|.++++.+..+..+..+   .+..+|+++.+++++.          .-.|.+||..+-.....+. ....|   
T Consensus        17 ~rv~viD~d~~k~lGmi~~g~~~---~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~-iP~k~R~~   92 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTGFLG---NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIE-IPPKPRAQ   92 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEESSE---EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEE-ETTS-B--
T ss_pred             ceEEEEECCCCcEEEEeecccCC---ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEe-cCCcchhe
Confidence            57999999999999888755444   4668999998887542          3368899887652211111 11111   


Q ss_pred             -CCCCeEEEEecCCCEEEEEeC--CCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCc
Q 005656           92 -SAPPLCIRFYANGRHILSAGQ--DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC  168 (685)
Q Consensus        92 -~~~v~~i~~~~~~~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (685)
                       ......++++.||++++....  ...|.|.|+...+...++..+                                   
T Consensus        93 ~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-----------------------------------  137 (342)
T PF06433_consen   93 VVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-----------------------------------  137 (342)
T ss_dssp             BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-----------------------------------
T ss_pred             ecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC-----------------------------------
Confidence             122345677888887776532  346777777777666555321                                   


Q ss_pred             ceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccC-CCEEEEEecCCcEEEEECC-CCcccccccccccc
Q 005656          169 NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC-GNFAVLGTAGGWIERFNLQ-SGISRGSYLDMSER  246 (685)
Q Consensus       169 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~dg~i~~~d~~-~~~~~~~~~~~~~~  246 (685)
                                                        +   |..+-|. .+-+..-|.||.+..+.+. .|+.......    
T Consensus       138 ----------------------------------G---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~----  176 (342)
T PF06433_consen  138 ----------------------------------G---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTK----  176 (342)
T ss_dssp             ----------------------------------S---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEE----
T ss_pred             ----------------------------------C---EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeecc----
Confidence                                              1   1111111 1345666777777777776 3433311110    


Q ss_pred             ccCCCCcCE-EEEEEcCCCCEEEEEECCCeEEEEECCCCceEE--Eeec-----------CCceeEEEEeecCCEEEEEe
Q 005656          247 SNYAHNGEV-VGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS--RWEV-----------GCSLVKIVYHRVNGLLATVA  312 (685)
Q Consensus       247 ~~~~h~~~v-~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~-----------~~~i~~~~~~~~~~~l~~~~  312 (685)
                      ....-..++ ..-++...+..++..+.+|.|+--|+.......  .+..           ++.-.-+++++..+.|++..
T Consensus       177 ~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLM  256 (342)
T PF06433_consen  177 VFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLM  256 (342)
T ss_dssp             ESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEE
T ss_pred             ccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEe
Confidence            111222222 233444455556667888999998887654322  2211           14455688888777666543


Q ss_pred             CCC----------eEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCC-EEEEEe-CCCcEEEEEcCCCceeeEEee
Q 005656          313 DDL----------VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK-WLLSSG-MDGSLRIWDVILARQIDAIHV  375 (685)
Q Consensus       313 ~dg----------~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~-~l~s~s-~Dg~I~iwd~~~~~~i~~~~~  375 (685)
                      ..|          .|.+||+.+++.++++.. ..++.+|+.+.|.+ +|++.+ .++.+.+||..+|+.++.+..
T Consensus       257 h~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  257 HQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             EE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             cCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            221          688999999999999873 24588999999776 665544 589999999999999998864

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.79  E-value=6.2e-06  Score=84.99  Aligned_cols=302  Identities=12%  Similarity=0.101  Sum_probs=164.3

Q ss_pred             ccCCCCEEEEE--------eCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCC
Q 005656           11 SSDGQPLLASG--------ASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP   82 (685)
Q Consensus        11 spdg~~~latg--------~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~   82 (685)
                      ||||+.+|+..        +..+.+.|||+++++...... . ...+....|||+|+.++... ++.|.+++...+  ..
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~-~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~--~~   75 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP-P-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATG--QE   75 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS--E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTS--EE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcC-C-ccccccceeecCCCeeEEEe-cCceEEEECCCC--Ce
Confidence            68998444421        234789999999988776654 2 67899999999999998875 567888865443  11


Q ss_pred             ceeEeccc-------C---------CCCCeEEEEecCCCEEEEEeC-CCceEEEEeecCceeeEechhhHHHHHhhcccc
Q 005656           83 RLLRFRSG-------H---------SAPPLCIRFYANGRHILSAGQ-DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK  145 (685)
Q Consensus        83 ~~~~~~~~-------h---------~~~v~~i~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  145 (685)
                      ..+.. .|       -         -+.-..+-|||||++|+.... +..|+.+.+........                
T Consensus        76 ~~lT~-dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~----------------  138 (353)
T PF00930_consen   76 TQLTT-DGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS----------------  138 (353)
T ss_dssp             EESES---TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE----------------
T ss_pred             EEecc-ccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc----------------
Confidence            11111 11       0         123467889999999987654 45566555432111000                


Q ss_pred             ccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCc
Q 005656          146 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGW  225 (685)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~  225 (685)
                                                                             ....+..+.+-.-|..-    ..-.
T Consensus       139 -------------------------------------------------------~yp~~~~~~YPk~G~~n----p~v~  159 (353)
T PF00930_consen  139 -------------------------------------------------------QYPEVESIRYPKAGDPN----PRVS  159 (353)
T ss_dssp             -------------------------------------------------------SS-EEEEEE--BTTS-------EEE
T ss_pred             -------------------------------------------------------cCCcccccccCCCCCcC----CceE
Confidence                                                                   00001111110001000    0013


Q ss_pred             EEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEE--ECCC---eEEEEECCCCceEEEee--cC---Cc
Q 005656          226 IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA--GYHG---DIKVWDFKGRDLKSRWE--VG---CS  295 (685)
Q Consensus       226 i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~--s~dg---~i~iwd~~~~~~~~~~~--~~---~~  295 (685)
                      +.++|+.+++....-..  . ....-...+..+.|.+++..++..  ..+.   .+.++|..++.......  .+   ..
T Consensus       160 l~v~~~~~~~~~~~~~~--~-~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~  236 (353)
T PF00930_consen  160 LFVVDLASGKTTELDPP--N-SLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDV  236 (353)
T ss_dssp             EEEEESSSTCCCEE-----H-HHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSS
T ss_pred             EEEEECCCCcEEEeeec--c-ccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceee
Confidence            66778877765421100  0 001345678899999998844433  3322   46777887765443332  22   22


Q ss_pred             eeEEEEe-ecCC-EEEEEeCCC--eEEEEEcCCCeeEEEEecCCCCeEE-EEEcCCCCEEE-EEeCC--C--cEEEEEcC
Q 005656          296 LVKIVYH-RVNG-LLATVADDL--VIRLFDVVALRMVRKFEGHTDRITD-FCFSEDGKWLL-SSGMD--G--SLRIWDVI  365 (685)
Q Consensus       296 i~~~~~~-~~~~-~l~~~~~dg--~I~i~d~~~~~~~~~~~~h~~~I~~-l~~spdg~~l~-s~s~D--g--~I~iwd~~  365 (685)
                      .....+. +++. ++.....+|  .|++++...+. .+.+....-.|+. +.|+++++.|. +|..+  +  .|+.-++.
T Consensus       237 ~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~  315 (353)
T PF00930_consen  237 YDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD  315 (353)
T ss_dssp             SSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT
T ss_pred             ecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC
Confidence            2355554 5555 555555676  56666766666 4456555666755 67888877665 55442  2  45555666


Q ss_pred             CCceeeEEeeccce-EEEEEcCCCCeEEEEEeC
Q 005656          366 LARQIDAIHVDVSI-TALSLSPNMDVLATAHVD  397 (685)
Q Consensus       366 ~~~~i~~~~~~~~v-~~v~~spdg~~Lat~~~d  397 (685)
                      .+..+..+...... ..+.|||+|++++..+..
T Consensus       316 ~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s~  348 (353)
T PF00930_consen  316 SGGEPKCLTCEDGDHYSASFSPDGKYYVDTYSG  348 (353)
T ss_dssp             ETTEEEESSTTSSTTEEEEE-TTSSEEEEEEES
T ss_pred             CCCCeEeccCCCCCceEEEECCCCCEEEEEEcC
Confidence            34455566555444 499999999999887654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.78  E-value=3.8e-07  Score=95.84  Aligned_cols=179  Identities=15%  Similarity=0.180  Sum_probs=138.1

Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005656          203 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  282 (685)
Q Consensus       203 ~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~  282 (685)
                      ..++|++++  +++++.|+.+|.|++++.+... ...+         .|...      +..|.++++|+.||+|.|-.+-
T Consensus        40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~---------~~s~~------~~~Gey~asCS~DGkv~I~sl~  101 (846)
T KOG2066|consen   40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNF---------DHSSS------ILEGEYVASCSDDGKVVIGSLF  101 (846)
T ss_pred             hHHHHHHhh--cceeeeccccceEEEEecCCcc-cccc---------ccccc------ccCCceEEEecCCCcEEEeecc
Confidence            345566655  6899999999999999877553 2222         44433      6689999999999999999999


Q ss_pred             CCceEEEeecCCceeEEEEeec-----CCEEEEEeCCCeEEEEEcC---CCeeEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 005656          283 GRDLKSRWEVGCSLVKIVYHRV-----NGLLATVADDLVIRLFDVV---ALRMVRKFEGHTDRITDFCFSEDGKWLLSSG  354 (685)
Q Consensus       283 ~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~~~dg~I~i~d~~---~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s  354 (685)
                      +.+...++..+.++.+++++|+     .+.+++|+.-| +.++.-.   ....+ .+..-.++|.++.|  .|.++|-++
T Consensus       102 ~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W--~g~lIAWan  177 (846)
T KOG2066|consen  102 TDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKW--RGNLIAWAN  177 (846)
T ss_pred             CCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEe--cCcEEEEec
Confidence            9999999999999999999998     56889999888 7776532   12222 45556789999999  688999999


Q ss_pred             CCCcEEEEEcCCCceeeEEeeccc-------eEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          355 MDGSLRIWDVILARQIDAIHVDVS-------ITALSLSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       355 ~Dg~I~iwd~~~~~~i~~~~~~~~-------v~~v~~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                      .+| |+|||+.+++.+..+..+..       ...+.|.++. .|+.|=.|  +|+|...+
T Consensus       178 d~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d--~v~i~~I~  233 (846)
T KOG2066|consen  178 DDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGD--SVKICSIK  233 (846)
T ss_pred             CCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEecCC--eEEEEEEe
Confidence            888 99999999998887764432       4567787664 56666555  78888776

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.78  E-value=1.1e-05  Score=77.96  Aligned_cols=250  Identities=15%  Similarity=0.135  Sum_probs=161.2

Q ss_pred             cEEEEEEccCCCCEEEEEeCCC-cEEEEeCCCCeeeEEeecccccCe--eEEEEeCCCcEEEEecC-----CCcEEEEEe
Q 005656            4 AVTALAFSSDGQPLLASGASSG-VISIWNLEKRRLQSVIREAHDNAI--ISLHFFANEPVLMSASA-----DNSIKMWIF   75 (685)
Q Consensus         4 ~V~~l~fspdg~~~latg~~dg-~I~vwd~~~~~~~~~~~~~h~~~V--~~l~~sp~~~~l~s~s~-----D~~v~iWd~   75 (685)
                      ....++.+|+....+|.+-.-| ...+||..+++....+. ...+.-  -.-.||+||++|++.-.     .|.|-|||.
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~-a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~   84 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW-APPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA   84 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc-CCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence            4567889996554777877665 47899999999887775 322221  14679999999998744     478999998


Q ss_pred             cCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCcee
Q 005656           76 DTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI  155 (685)
Q Consensus        76 ~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (685)
                      ...   .+.+..+..|.-.+..+.+.|||+.|+.+..  -|.- ...+++.                             
T Consensus        85 ~~~---~~ri~E~~s~GIGPHel~l~pDG~tLvVANG--GI~T-hpd~GR~-----------------------------  129 (305)
T PF07433_consen   85 ARG---YRRIGEFPSHGIGPHELLLMPDGETLVVANG--GIET-HPDSGRA-----------------------------  129 (305)
T ss_pred             cCC---cEEEeEecCCCcChhhEEEcCCCCEEEEEcC--CCcc-CcccCce-----------------------------
Confidence            722   2667777888888999999999988887642  1210 0000000                             


Q ss_pred             eeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCc
Q 005656          156 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI  235 (685)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~  235 (685)
                                                                                  .+=..+.+..+...|..+|.
T Consensus       130 ------------------------------------------------------------kLNl~tM~psL~~ld~~sG~  149 (305)
T PF07433_consen  130 ------------------------------------------------------------KLNLDTMQPSLVYLDARSGA  149 (305)
T ss_pred             ------------------------------------------------------------ecChhhcCCceEEEecCCCc
Confidence                                                                        01111122334455556666


Q ss_pred             cccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCe-------EEEEECCCCceEEEee--------cCCceeEEE
Q 005656          236 SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD-------IKVWDFKGRDLKSRWE--------VGCSLVKIV  300 (685)
Q Consensus       236 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~-------i~iwd~~~~~~~~~~~--------~~~~i~~~~  300 (685)
                      ...+..-    ...-|..+|+.++++++|..++..-..|.       |-+++-.  .....+.        ....+-+++
T Consensus       150 ll~q~~L----p~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa  223 (305)
T PF07433_consen  150 LLEQVEL----PPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIA  223 (305)
T ss_pred             eeeeeec----CccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEE
Confidence            5544210    11257789999999999987666544432       3344332  2222222        236789999


Q ss_pred             EeecCCEEEEEe-CCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 005656          301 YHRVNGLLATVA-DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSL  359 (685)
Q Consensus       301 ~~~~~~~l~~~~-~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I  359 (685)
                      +++++.++++.+ ..+.+.+||..+++.+....-  ..+..++-.+++ +++|.+. |.+
T Consensus       224 ~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l--~D~cGva~~~~~-f~~ssG~-G~~  279 (305)
T PF07433_consen  224 ADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL--PDACGVAPTDDG-FLVSSGQ-GQL  279 (305)
T ss_pred             EeCCCCEEEEECCCCCEEEEEECCCCCEeecccc--CceeeeeecCCc-eEEeCCC-ccE
Confidence            999999776665 467999999999998876642  346777777776 6665553 443

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.75  E-value=3.3e-08  Score=93.39  Aligned_cols=149  Identities=19%  Similarity=0.251  Sum_probs=119.2

Q ss_pred             EecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCC-----ceEEEeecCC
Q 005656          220 GTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-----DLKSRWEVGC  294 (685)
Q Consensus       220 g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~-----~~~~~~~~~~  294 (685)
                      .+.+-.|-+-|+.+|.... |         ...+.|.++.|...+..++.|...|.|..+|++.+     .+...+-+++
T Consensus       230 ~G~sqqv~L~nvetg~~qs-f---------~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~S  299 (425)
T KOG2695|consen  230 VGLSQQVLLTNVETGHQQS-F---------QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDS  299 (425)
T ss_pred             ccccceeEEEEeecccccc-c---------ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCc
Confidence            3344557788888764432 1         45677888999888899999999999999999854     5667778889


Q ss_pred             ceeEEEEee-cCCEEEEEeCCCeEEEEEcCCCee---EEEEecCCCCeEEEE--EcCCCCEEEEEeCCCcEEEEEcCCCc
Q 005656          295 SLVKIVYHR-VNGLLATVADDLVIRLFDVVALRM---VRKFEGHTDRITDFC--FSEDGKWLLSSGMDGSLRIWDVILAR  368 (685)
Q Consensus       295 ~i~~~~~~~-~~~~l~~~~~dg~I~i~d~~~~~~---~~~~~~h~~~I~~l~--~spdg~~l~s~s~Dg~I~iwd~~~~~  368 (685)
                      .++++..-. ++.+|.+.+.+|+|++||++--++   +.++.||.+.-.-+-  ..+....+++++.|...|||.+.+|.
T Consensus       300 svtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh  379 (425)
T KOG2695|consen  300 SVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH  379 (425)
T ss_pred             chhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCc
Confidence            999988776 778999999999999999987666   999999976544333  34556788999999999999999999


Q ss_pred             eeeEEeeccc
Q 005656          369 QIDAIHVDVS  378 (685)
Q Consensus       369 ~i~~~~~~~~  378 (685)
                      ++.++..+..
T Consensus       380 Ll~tipf~~s  389 (425)
T KOG2695|consen  380 LLCTIPFPYS  389 (425)
T ss_pred             eeeccCCCCc
Confidence            9999887654

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.74  E-value=4.8e-07  Score=87.51  Aligned_cols=245  Identities=11%  Similarity=0.051  Sum_probs=151.8

Q ss_pred             eEecccCCCCCeEEEEecCCC-EEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccccc
Q 005656           85 LRFRSGHSAPPLCIRFYANGR-HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIR  163 (685)
Q Consensus        85 ~~~~~~h~~~v~~i~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (685)
                      ...+.+|...|..++|+|..+ ++..++.+..|++.|+++...+..+.                                
T Consensus       186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~--------------------------------  233 (463)
T KOG1645|consen  186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI--------------------------------  233 (463)
T ss_pred             hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee--------------------------------
Confidence            345678889999999999765 78889999999999998876554442                                


Q ss_pred             ccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccC-CCEEEEEecCCcEEEEECCCCcccccccc
Q 005656          164 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC-GNFAVLGTAGGWIERFNLQSGISRGSYLD  242 (685)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~dg~i~~~d~~~~~~~~~~~~  242 (685)
                                                           ....+++++|.-+ .+++++|..+|.|.+||++...-......
T Consensus       234 -------------------------------------a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~  276 (463)
T KOG1645|consen  234 -------------------------------------AYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELV  276 (463)
T ss_pred             -------------------------------------ccCCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhh
Confidence                                                 2367888898775 47788999999999999987543222110


Q ss_pred             ccccccCCCCcCEEEEE------EcCCCCEEEEEECCCeEEEEECC----CCceEEEeecCCceeEEEEeecCCEEEEEe
Q 005656          243 MSERSNYAHNGEVVGVA------CDSTNTLMISAGYHGDIKVWDFK----GRDLKSRWEVGCSLVKIVYHRVNGLLATVA  312 (685)
Q Consensus       243 ~~~~~~~~h~~~v~~l~------~~~~~~~l~s~s~dg~i~iwd~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  312 (685)
                      ..     ....+|..++      ..+.+.+++..+.+  +..|.+.    ...++..+..++...++.+++..+.++...
T Consensus       277 a~-----~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~ty  349 (463)
T KOG1645|consen  277 AN-----VTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLLTY  349 (463)
T ss_pred             hh-----hccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccceEEEEe
Confidence            00     1112333332      33344455544432  4566654    223334445557777888887666444433


Q ss_pred             CC-C---eEE---E-EEcCCCeeEEEE-ecCCC-C------eEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCceeeEEee
Q 005656          313 DD-L---VIR---L-FDVVALRMVRKF-EGHTD-R------ITDFCFSEDGKWLL-SSGMDGSLRIWDVILARQIDAIHV  375 (685)
Q Consensus       313 ~d-g---~I~---i-~d~~~~~~~~~~-~~h~~-~------I~~l~~spdg~~l~-s~s~Dg~I~iwd~~~~~~i~~~~~  375 (685)
                      .. .   +++   . -|-.+|.++..- .+|.+ +      -..+.-.++.++++ +++..+.+.+||..+++.++.+..
T Consensus       350 Rs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~~  429 (463)
T KOG1645|consen  350 RSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLAL  429 (463)
T ss_pred             cCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhheeeeccc
Confidence            22 1   111   1 122334333222 12211 1      11222345666666 455667899999999999999999


Q ss_pred             ccceEEEEEcCC--CCeEEEEEeCCCeEEEEEcC
Q 005656          376 DVSITALSLSPN--MDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       376 ~~~v~~v~~spd--g~~Lat~~~d~~~I~lW~~~  407 (685)
                      ..+|..++....  +.||++-..|  .++|+.+.
T Consensus       430 ~epv~Dicp~~~n~~syLa~LTd~--~v~Iyk~e  461 (463)
T KOG1645|consen  430 SEPVLDICPNDTNGSSYLALLTDD--RVHIYKNE  461 (463)
T ss_pred             CcceeecceeecCCcchhhheecc--eEEEEecC
Confidence            999988876543  5688887755  68887653

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.72  E-value=2.9e-05  Score=83.59  Aligned_cols=320  Identities=12%  Similarity=0.091  Sum_probs=175.4

Q ss_pred             EEEEEeCCCcEEEEeCCCCeeeEEeecccc-----cCee--EEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecc
Q 005656           17 LLASGASSGVISIWNLEKRRLQSVIREAHD-----NAII--SLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS   89 (685)
Q Consensus        17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h~-----~~V~--~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~   89 (685)
                      .++.++.+|.|.-.|..+++.+-.......     ..+.  .+... ++..++.++.++.|.-+|.++++    .+-...
T Consensus        63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~----~~W~~~  137 (488)
T cd00216          63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGK----QVWKFG  137 (488)
T ss_pred             EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCC----Eeeeec
Confidence            456677789999999999988777652221     0110  11111 22577778889999999888773    332221


Q ss_pred             cCCCC-----C-eEEEEecCCCEEEEEe---------CCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCce
Q 005656           90 GHSAP-----P-LCIRFYANGRHILSAG---------QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV  154 (685)
Q Consensus        90 ~h~~~-----v-~~i~~~~~~~~l~s~s---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (685)
                      .....     + ....+.  +..++.++         .+|.+..+|..+++..-........           ..     
T Consensus       138 ~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~-----------~~-----  199 (488)
T cd00216         138 NNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPD-----------PN-----  199 (488)
T ss_pred             CCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCC-----------cC-----
Confidence            11110     1 111122  23455443         3577888888888765544211000           00     


Q ss_pred             eeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCC----------
Q 005656          155 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG----------  224 (685)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg----------  224 (685)
                       .       .+.|...         ...|.              ......-.+.++.+.+..+++++.++          
T Consensus       200 -~-------~~~~~~~---------~~~~~--------------~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~  248 (488)
T cd00216         200 -A-------FPTWGPD---------RQMWG--------------PGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRT  248 (488)
T ss_pred             -C-------CCCCCCC---------cceec--------------CCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccC
Confidence             0       0000000         00000              00000112345666677888887665          


Q ss_pred             --------cEEEEECCCCcccccccccccccc--CCCCcCE-EEEEEcCCCC---EEEEEECCCeEEEEECCCCceEEEe
Q 005656          225 --------WIERFNLQSGISRGSYLDMSERSN--YAHNGEV-VGVACDSTNT---LMISAGYHGDIKVWDFKGRDLKSRW  290 (685)
Q Consensus       225 --------~i~~~d~~~~~~~~~~~~~~~~~~--~~h~~~v-~~l~~~~~~~---~l~s~s~dg~i~iwd~~~~~~~~~~  290 (685)
                              .|.-+|..+|+....+........  .....++ ..+. .-++.   .++.++.+|.+...|..+|+.+...
T Consensus       249 ~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~  327 (488)
T cd00216         249 PGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISAR  327 (488)
T ss_pred             CCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEe
Confidence                    799999999998877642110000  0111111 1111 11232   5777888999999999999998876


Q ss_pred             ecCCceeEEEEeecCCEEEEE------------------eCCCeEEEEEcCCCeeEEEEecCC--------CCe--EEEE
Q 005656          291 EVGCSLVKIVYHRVNGLLATV------------------ADDLVIRLFDVVALRMVRKFEGHT--------DRI--TDFC  342 (685)
Q Consensus       291 ~~~~~i~~~~~~~~~~~l~~~------------------~~dg~I~i~d~~~~~~~~~~~~h~--------~~I--~~l~  342 (685)
                      ...  ...+..+|  ..++++                  ..+|.+.-+|+.+|+.+-+.....        .+.  ..+.
T Consensus       328 ~~~--~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~  403 (488)
T cd00216         328 PEV--EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA  403 (488)
T ss_pred             Eee--ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE
Confidence            542  11223333  333332                  236789999999998877665321        111  1122


Q ss_pred             EcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccceE--EEEEcCCCCeEEEEEeCC
Q 005656          343 FSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSIT--ALSLSPNMDVLATAHVDQ  398 (685)
Q Consensus       343 ~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~--~v~~spdg~~Lat~~~d~  398 (685)
                      .  .+..|+.++.||.|+.+|..+|+.+-.++....+.  -+.+..+|+ ++++..++
T Consensus       404 ~--~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~-~yv~~~~g  458 (488)
T cd00216         404 T--AGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATPMTYEVNGK-QYVGVMVG  458 (488)
T ss_pred             e--cCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEcCEEEEeCCE-EEEEEEec
Confidence            2  56788899999999999999999998888766632  233344543 33333344

The alignment model contains an 8-bladed beta-propeller.

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.69  E-value=6.5e-08  Score=63.67  Aligned_cols=39  Identities=41%  Similarity=0.868  Sum_probs=37.2

Q ss_pred             CeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005656          325 LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD  363 (685)
Q Consensus       325 ~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd  363 (685)
                      +++++++.+|.+.|++++|+|++++|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467899999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.67  E-value=2.1e-07  Score=84.77  Aligned_cols=190  Identities=17%  Similarity=0.218  Sum_probs=116.5

Q ss_pred             EEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE-----CCCeEEEEEC
Q 005656          207 ACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-----YHGDIKVWDF  281 (685)
Q Consensus       207 ~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-----~dg~i~iwd~  281 (685)
                      +-+.+-.++.+++++.||.+.+++.+.-......      ....|.+ -.+.++...++.+.+++     .-+..+.|++
T Consensus        94 ~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~------i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~  166 (319)
T KOG4714|consen   94 NDACTMTDNRVCIGYADGSLAVFSTDKDLALMSR------IPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTL  166 (319)
T ss_pred             cccccccCCceEecCCCceEEEEechHHHhhhhh------ccccccc-ccccceeecccEEecCCcceEeeccceeeecc
Confidence            3344455788999999999999988762111110      0001211 11222223344444332     1234566666


Q ss_pred             CCCceE-EEeecCCceeEEEEeecCC-EEEEEeCCCeEEEEEcCCCee-EEEEecCCCCeEEEEEcC-CCCEEEEEeCCC
Q 005656          282 KGRDLK-SRWEVGCSLVKIVYHRVNG-LLATVADDLVIRLFDVVALRM-VRKFEGHTDRITDFCFSE-DGKWLLSSGMDG  357 (685)
Q Consensus       282 ~~~~~~-~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~I~i~d~~~~~~-~~~~~~h~~~I~~l~~sp-dg~~l~s~s~Dg  357 (685)
                      +..+.. ........+++++-+|..+ ++++|+.||.+.+||.+.... +..+..|..+|+.+-|+| ++..|+++++||
T Consensus       167 ~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedG  246 (319)
T KOG4714|consen  167 DPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDG  246 (319)
T ss_pred             cccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCC
Confidence            533221 1111224488889888655 788889999999999998743 445678999999999999 667999999999


Q ss_pred             cEEEEEcCCCceee------------------E-Eee----ccceEEE-EEcCCCCeEEEEEeCCCeEEEEE
Q 005656          358 SLRIWDVILARQID------------------A-IHV----DVSITAL-SLSPNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       358 ~I~iwd~~~~~~i~------------------~-~~~----~~~v~~v-~~spdg~~Lat~~~d~~~I~lW~  405 (685)
                      .+--||..+ ..+.                  . +..    +....++ .|.--|..|++|+.-+ .||+..
T Consensus       247 slw~wdas~-~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~e-aIyl~~  316 (319)
T KOG4714|consen  247 SLWHWDAST-TFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAE-AIYLTR  316 (319)
T ss_pred             cEEEEcCCC-ceEEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccc-eEEEec
Confidence            999999763 1111                  0 110    1111111 2444678898888666 888875

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.64  E-value=9.3e-08  Score=90.46  Aligned_cols=129  Identities=15%  Similarity=0.222  Sum_probs=99.4

Q ss_pred             CCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcC-CCCEEEEEECCCeEEEEE
Q 005656          202 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYHGDIKVWD  280 (685)
Q Consensus       202 ~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~dg~i~iwd  280 (685)
                      .+.|.+..|...++.+..|+.+|.|..+|++.+..-....    ....-|...|+++..-. ++++|++.+.+|+|++||
T Consensus       252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~----a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD  327 (425)
T KOG2695|consen  252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWC----AQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYD  327 (425)
T ss_pred             chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcc----eEEEEcCcchhhhhhhccccceEeeccCcCceeEee
Confidence            4567778888889999999999999999998762111000    01117899999998876 778999999999999999


Q ss_pred             CCCCce---EEEeecC---CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecC
Q 005656          281 FKGRDL---KSRWEVG---CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH  334 (685)
Q Consensus       281 ~~~~~~---~~~~~~~---~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h  334 (685)
                      .+.-+.   +.++..|   ....-+-..+....++++++|...+||.++.+..+.++.-.
T Consensus       328 ~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~  387 (425)
T KOG2695|consen  328 LRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP  387 (425)
T ss_pred             ehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence            986655   6676665   22333455667788999999999999999999999887643

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.63  E-value=1.9e-05  Score=76.22  Aligned_cols=197  Identities=13%  Similarity=0.172  Sum_probs=142.1

Q ss_pred             CCCeEEEEEcc-CCCEEEEEecCC-cEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC-----CC
Q 005656          202 PTAVKACTISA-CGNFAVLGTAGG-WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-----HG  274 (685)
Q Consensus       202 ~~~v~~~~~s~-~g~~l~~g~~dg-~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-----dg  274 (685)
                      +.....++.+| .+..++++-.-| ...+||.+++.....+.....+-+++|      -+|+++|++|++.-.     .|
T Consensus         4 P~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G   77 (305)
T PF07433_consen    4 PARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRG   77 (305)
T ss_pred             CccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCCCEEEEeccccCCCcE
Confidence            34456778888 556667776666 578899999998877765444444455      478999999998743     47


Q ss_pred             eEEEEECC-CCceEEEeecC-CceeEEEEeecCCEEEEEeC------------------CCeEEEEEcCCCeeEEEEe--
Q 005656          275 DIKVWDFK-GRDLKSRWEVG-CSLVKIVYHRVNGLLATVAD------------------DLVIRLFDVVALRMVRKFE--  332 (685)
Q Consensus       275 ~i~iwd~~-~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~------------------dg~I~i~d~~~~~~~~~~~--  332 (685)
                      .|-|||.. +.+.+..+..+ -....+.+.|||+.|+++..                  +.++...|..+|+.+.+..  
T Consensus        78 ~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp  157 (305)
T PF07433_consen   78 VIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELP  157 (305)
T ss_pred             EEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecC
Confidence            89999999 55666666654 45667889999987777632                  2356777888998887743  


Q ss_pred             --cCCCCeEEEEEcCCCCEEEEEeCCCc-------EEEEEcCCCceeeEEe--------eccceEEEEEcCCCCeEEEEE
Q 005656          333 --GHTDRITDFCFSEDGKWLLSSGMDGS-------LRIWDVILARQIDAIH--------VDVSITALSLSPNMDVLATAH  395 (685)
Q Consensus       333 --~h~~~I~~l~~spdg~~l~s~s~Dg~-------I~iwd~~~~~~i~~~~--------~~~~v~~v~~spdg~~Lat~~  395 (685)
                        -|...|..+++.++|..++..-..|.       |-+++-  +..+..+.        ....+-+|+++++|.++++++
T Consensus       158 ~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~ts  235 (305)
T PF07433_consen  158 PDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTS  235 (305)
T ss_pred             ccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEEC
Confidence              37788999999999987666544332       344432  33333333        234589999999999999999


Q ss_pred             eCCCeEEEEEc
Q 005656          396 VDQNGVYLWVN  406 (685)
Q Consensus       396 ~d~~~I~lW~~  406 (685)
                      --++.+.+|+.
T Consensus       236 PrGg~~~~~d~  246 (305)
T PF07433_consen  236 PRGGRVAVWDA  246 (305)
T ss_pred             CCCCEEEEEEC
Confidence            99999999964

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.61  E-value=4.9e-07  Score=96.07  Aligned_cols=143  Identities=18%  Similarity=0.223  Sum_probs=114.6

Q ss_pred             ccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC---------CCeEEEEEC
Q 005656          211 SACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY---------HGDIKVWDF  281 (685)
Q Consensus       211 s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~---------dg~i~iwd~  281 (685)
                      -.+++++.+|...|.|.+-|..+.+...++.        +|++.|..+.+  .|+.|++||.         |..|++||+
T Consensus       184 R~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~--------aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDL  253 (1118)
T KOG1275|consen  184 RYNNRNLFCGDTRGTVFLRDPNSFETIHTFD--------AHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDL  253 (1118)
T ss_pred             EecCcEEEeecccceEEeecCCcCceeeeee--------ccccceeeeec--cCCeEEEeecccccccccccchhhhhhh
Confidence            3467899999999999999999999999886        99999988776  5778999875         455899999


Q ss_pred             CCCceEEEeecCCceeEEEEeecC-CEEEEEeCCCeEEEEEcC---CC-eeEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q 005656          282 KGRDLKSRWEVGCSLVKIVYHRVN-GLLATVADDLVIRLFDVV---AL-RMVRKFEGHTDRITDFCFSEDGKWLLSSGMD  356 (685)
Q Consensus       282 ~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~I~i~d~~---~~-~~~~~~~~h~~~I~~l~~spdg~~l~s~s~D  356 (685)
                      +..+.+.-+..+....-+.|+|.- ..+++++..|...+.|..   +. .-+..+......+..+++|++|+.++.|..+
T Consensus       254 Rmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~  333 (1118)
T KOG1275|consen  254 RMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHE  333 (1118)
T ss_pred             hhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEeccc
Confidence            988777666666555677888864 488889999999999943   32 1122233334559999999999999999999


Q ss_pred             CcEEEEE
Q 005656          357 GSLRIWD  363 (685)
Q Consensus       357 g~I~iwd  363 (685)
                      |.|.+|.
T Consensus       334 g~v~~wa  340 (1118)
T KOG1275|consen  334 GHVNLWA  340 (1118)
T ss_pred             CcEeeec
Confidence            9999997

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.61  E-value=6.7e-05  Score=83.08  Aligned_cols=278  Identities=13%  Similarity=0.162  Sum_probs=155.2

Q ss_pred             CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCC
Q 005656            3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP   82 (685)
Q Consensus         3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~   82 (685)
                      +.|.++.|..++. -++.+...|.|.+-|.++....-.  +.-..+|.+++|+||+.+++..+.++++.+-..+-     
T Consensus        69 ~~i~s~~fl~d~~-~i~v~~~~G~iilvd~et~~~eiv--g~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f-----  140 (1265)
T KOG1920|consen   69 DEIVSVQFLADTN-SICVITALGDIILVDPETLELEIV--GNVDNGISAASWSPDEELLALITGRQTLLFMTKDF-----  140 (1265)
T ss_pred             cceEEEEEecccc-eEEEEecCCcEEEEcccccceeee--eeccCceEEEeecCCCcEEEEEeCCcEEEEEeccc-----
Confidence            4688999999887 566777889999998877654322  23568899999999999999888888877653221     


Q ss_pred             ceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccc
Q 005656           83 RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI  162 (685)
Q Consensus        83 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (685)
                      .++....     . ...-.+.+ ..+.+|..+.=.-+.-..++....-.              ...              
T Consensus       141 ~~i~E~~-----L-~~d~~~~s-k~v~VGwGrkeTqfrgs~gr~~~~~~--------------~~~--------------  185 (1265)
T KOG1920|consen  141 EPIAEKP-----L-DADDERKS-KFVNVGWGRKETQFRGSEGRQAARQK--------------IEK--------------  185 (1265)
T ss_pred             cchhccc-----c-cccccccc-ccceecccccceeeecchhhhccccc--------------ccc--------------
Confidence            1111100     0 11111122 23333332211111111110000000              000              


Q ss_pred             cccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEE-----ecCCcEEEEECCCCccc
Q 005656          163 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-----TAGGWIERFNLQSGISR  237 (685)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-----~~dg~i~~~d~~~~~~~  237 (685)
                                                   .... ......+.=+.++|-.||.++++.     .....|++||-. |..-
T Consensus       186 -----------------------------ek~~-~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Ln  234 (1265)
T KOG1920|consen  186 -----------------------------EKAL-EQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALN  234 (1265)
T ss_pred             -----------------------------cccc-cchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhh
Confidence                                         0000 000112334578999999999883     333789999977 4332


Q ss_pred             cccccccccccCCCCcCEEEEEEcCCCCEEEEEE---CCCeEEEEECCC---CceEEEeecC-CceeEEEEeecCCEEEE
Q 005656          238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG---YHGDIKVWDFKG---RDLKSRWEVG-CSLVKIVYHRVNGLLAT  310 (685)
Q Consensus       238 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s---~dg~i~iwd~~~---~~~~~~~~~~-~~i~~~~~~~~~~~l~~  310 (685)
                      ..-.        ...+.-.+++|-|.|..+++..   .|+.|.++.-+.   +.....+... ..+..++|+.++..||+
T Consensus       235 s~se--------~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv  306 (1265)
T KOG1920|consen  235 STSE--------PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAV  306 (1265)
T ss_pred             cccC--------cccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceee
Confidence            2111        2334446899999999888764   566788887543   2222222223 34899999999999998


Q ss_pred             ---EeCCCeEEEEEcCCCeeE--EEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEc
Q 005656          311 ---VADDLVIRLFDVVALRMV--RKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIWDV  364 (685)
Q Consensus       311 ---~~~dg~I~i~d~~~~~~~--~~~~~h~~~I~~l~~spdg-~~l~s~s~Dg~I~iwd~  364 (685)
                         ......|++|-+.+..-.  +.+.-.....  +.|+|-- ..|..-..+|...++++
T Consensus       307 ~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~  364 (1265)
T KOG1920|consen  307 VTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF  364 (1265)
T ss_pred             eecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence               555567999998775322  1222111111  6777732 22333335565555543

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.61  E-value=2e-05  Score=81.12  Aligned_cols=283  Identities=13%  Similarity=0.107  Sum_probs=141.9

Q ss_pred             CCeEEEEecCCCEEEEEeCCCceEEEEeecCceee-EechhhHHHHHhhccccccccccCceeeeecccccccCCcceEE
Q 005656           94 PPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR-ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVT  172 (685)
Q Consensus        94 ~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (685)
                      .|+.+.|.++..-|+.+...|.|-+|.....+... .............+........+..+..-.....++.       
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~g-------   75 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEG-------   75 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEE-------
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccc-------
Confidence            47899999998899999999999999987765432 1111111000011111111111100100000000000       


Q ss_pred             EEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCC
Q 005656          173 CHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHN  252 (685)
Q Consensus       173 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~  252 (685)
                                       +....+.  ....++|++++.| +=.|+++|+.+|.+.+.|++....+..-.-..........
T Consensus        76 -----------------f~P~~l~--~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~  135 (395)
T PF08596_consen   76 -----------------FLPLTLL--DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSS  135 (395)
T ss_dssp             -----------------EEEEEEE-----S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS--
T ss_pred             -----------------cCchhhe--eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccc
Confidence                             0000011  1337889999997 6679999999999999999776655442111101111344


Q ss_pred             cCEEEEEEcC-----CC---CEEEEEECCCeEEEEECCC---CceE----EEe-ecCCceeEEE-Eeec-----------
Q 005656          253 GEVVGVACDS-----TN---TLMISAGYHGDIKVWDFKG---RDLK----SRW-EVGCSLVKIV-YHRV-----------  304 (685)
Q Consensus       253 ~~v~~l~~~~-----~~---~~l~s~s~dg~i~iwd~~~---~~~~----~~~-~~~~~i~~~~-~~~~-----------  304 (685)
                      ..|+++.|.-     |+   -.+++|...|.+.+|.+.-   +...    ... ...+++..+. ++.+           
T Consensus       136 ~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~  215 (395)
T PF08596_consen  136 SYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISA  215 (395)
T ss_dssp             --EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHH
T ss_pred             cCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhH
Confidence            5678887752     33   3678888999999998751   2111    111 2334554444 2221           


Q ss_pred             ------C---CEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEc-----CCCCEEEEEeCCCcEEEEEcCCCcee
Q 005656          305 ------N---GLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFS-----EDGKWLLSSGMDGSLRIWDVILARQI  370 (685)
Q Consensus       305 ------~---~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~s-----pdg~~l~s~s~Dg~I~iwd~~~~~~i  370 (685)
                            +   .-+++...+..++++...+.+...+.....-....+++-     ..+..|++-..+|.|++|.++.-+.+
T Consensus       216 ~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei  295 (395)
T PF08596_consen  216 MQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEI  295 (395)
T ss_dssp             HHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EE
T ss_pred             hhccccCCCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHh
Confidence                  1   234455557889999998887766555222233344452     35667888889999999999999988


Q ss_pred             eEEeeccc-----eEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656          371 DAIHVDVS-----ITALSLSPNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       371 ~~~~~~~~-----v~~v~~spdg~~Lat~~~d~~~I~lW~  405 (685)
                      ..+.....     +...+++++|+.++-.+..  .+.+++
T Consensus       296 ~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gps--E~~l~s  333 (395)
T PF08596_consen  296 KSVSLPPPLDSRRLSSSSISRNGDIFYWTGPS--EIQLFS  333 (395)
T ss_dssp             EEEE-SS---HHHHTT-EE-TTS-EEEE-SSS--EEEEEE
T ss_pred             hcccCCCccccccccccEECCCCCEEEEeCcc--cEEEEE
Confidence            88776432     5677889999988877654  455543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.60  E-value=0.00043  Score=63.74  Aligned_cols=114  Identities=11%  Similarity=0.026  Sum_probs=78.5

Q ss_pred             EccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecc
Q 005656           10 FSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS   89 (685)
Q Consensus        10 fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~   89 (685)
                      .-+|.+.+++.|+..+.+.--|..+|+.+....  -...|.+-+.- -|++++.|...|.+.+-++.++..-+...    
T Consensus        18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~i--lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~----   90 (354)
T KOG4649|consen   18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI--LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFV----   90 (354)
T ss_pred             EecCCceEEEEecCCceEEEecCCCCcEEeehh--hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeee----
Confidence            345556688899999999999999998876543  23334443333 46789999999999999988874322211    


Q ss_pred             cCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEe
Q 005656           90 GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSREL  130 (685)
Q Consensus        90 ~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~  130 (685)
                      ....-=......+++..+..++.|++....|..+..++...
T Consensus        91 ~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyks  131 (354)
T KOG4649|consen   91 ILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS  131 (354)
T ss_pred             ehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEec
Confidence            11111122344568889999999999999999877765543

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.59  E-value=7.9e-08  Score=101.30  Aligned_cols=218  Identities=13%  Similarity=0.196  Sum_probs=149.9

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCC--cEEEEEecCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADN--SIKMWIFDTT   78 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~--~v~iWd~~~~   78 (685)
                      |+..-||++|+-+.+ .|++|+..|.|++|++.+|....... +|..+|+.+.=+.||..+++.+.-.  -..+|+....
T Consensus      1100 ~~~~fTc~afs~~~~-hL~vG~~~Geik~~nv~sG~~e~s~n-cH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~ 1177 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTN-HLAVGSHAGEIKIFNVSSGSMEESVN-CHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST 1177 (1516)
T ss_pred             cccceeeEEeecCCc-eEEeeeccceEEEEEccCcccccccc-ccccccccccccCCcceeeeeccccCchHHHhccccc
Confidence            456789999999887 89999999999999999999998887 9999999999999999777765533  4678987653


Q ss_pred             CCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeee
Q 005656           79 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD  158 (685)
Q Consensus        79 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (685)
                      .   ...+++    ..-.++.|+.....-+.|+......+||+.++....++-....                       
T Consensus      1178 ~---~~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~----------------------- 1227 (1516)
T KOG1832|consen 1178 G---GPRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTV----------------------- 1227 (1516)
T ss_pred             c---Cccccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcch-----------------------
Confidence            2   222222    2345778876544444455455688999988765544311100                       


Q ss_pred             cccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccc
Q 005656          159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG  238 (685)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~  238 (685)
                                                               .....-.+..|+|+...++-   ||  .+||.+....++
T Consensus      1228 -----------------------------------------~~~y~~n~a~FsP~D~LIln---dG--vLWDvR~~~aIh 1261 (1516)
T KOG1832|consen 1228 -----------------------------------------TSSYSNNLAHFSPCDTLILN---DG--VLWDVRIPEAIH 1261 (1516)
T ss_pred             -----------------------------------------hhhhhccccccCCCcceEee---Cc--eeeeeccHHHHh
Confidence                                                     11122256789999887763   44  479999887777


Q ss_pred             ccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEE
Q 005656          239 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV  311 (685)
Q Consensus       239 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  311 (685)
                      .|..        .+. --+-.|+|.|..++.-+     .|||+++.++++....- .-..+.|+..|..++..
T Consensus      1262 ~FD~--------ft~-~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~L-dqc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1262 RFDQ--------FTD-YGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSL-DQCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred             hhhh--------hee-cccccccCCCceEEeec-----hhhhhHHHHHHhcCccc-cceEEEeccCccchhhh
Confidence            7642        111 12335899998888766     48999998877655432 23456777777755543

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.55  E-value=2.9e-07  Score=95.36  Aligned_cols=121  Identities=17%  Similarity=0.274  Sum_probs=97.8

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCee-eEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL-QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD   79 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~-~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~   79 (685)
                      |+..|+.+.|.|....++|+++.|-.+..||+.+... +.... .-...-..++|+...+.+.+.+..+.|++||...+.
T Consensus       113 hsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~-~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs  191 (1081)
T KOG0309|consen  113 HSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTS-SWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGS  191 (1081)
T ss_pred             CccceeccccCCCCCcceeeccccccceeeeccCCCcceeeee-cccccCceeeecccCcchhhhccCCceEEEeccCCC
Confidence            6788999999999888999999999999999988543 44444 444566889999876666666778899999988765


Q ss_pred             CCCceeEecccCCCCCeEEEEecC-CCEEEEEeCCCceEEEEeecCc
Q 005656           80 GDPRLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQDQ  125 (685)
Q Consensus        80 ~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~dg~i~vwd~~~~~  125 (685)
                         .++..+++|...|..+.|..- ...+.+++.||+|+.||.....
T Consensus       192 ---~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt  235 (1081)
T KOG0309|consen  192 ---TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST  235 (1081)
T ss_pred             ---cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccc
Confidence               667778889999999999763 4468899999999999986543

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.54  E-value=2.8e-07  Score=60.59  Aligned_cols=39  Identities=26%  Similarity=0.470  Sum_probs=36.2

Q ss_pred             CeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEE
Q 005656           35 RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI   74 (685)
Q Consensus        35 ~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd   74 (685)
                      ++++.++. +|.+.|++++|+|++.+|++++.|++|++||
T Consensus         1 g~~~~~~~-~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFR-GHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEE-SSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEc-CCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            35778888 9999999999999999999999999999996

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.54  E-value=1.7e-05  Score=84.47  Aligned_cols=222  Identities=14%  Similarity=0.199  Sum_probs=138.9

Q ss_pred             EEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCC-CeEEEEecCCCEEEEEeCCCc-----eEEEEeecCce
Q 005656           53 HFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP-PLCIRFYANGRHILSAGQDRA-----FRLFSVIQDQQ  126 (685)
Q Consensus        53 ~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~-v~~i~~~~~~~~l~s~s~dg~-----i~vwd~~~~~~  126 (685)
                      +|++++..++.|+.+|.|.+.+  ..   .+.++.+..+... |..+....+..+|++.+.|+.     +++|+++.-+.
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln--~s---~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~  104 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILN--SS---FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDK  104 (933)
T ss_pred             EEcCCCceEEEeeccccEEEec--cc---ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCC
Confidence            3567888999999999887774  32   1444666677766 444444434468888887754     88998864321


Q ss_pred             eeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeE
Q 005656          127 SRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVK  206 (685)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~  206 (685)
                      ...                       |.               .+      +..+++..           ..+..+.++.
T Consensus       105 n~s-----------------------P~---------------c~------~~~ri~~~-----------~np~~~~p~s  129 (933)
T KOG2114|consen  105 NNS-----------------------PQ---------------CL------YEHRIFTI-----------KNPTNPSPAS  129 (933)
T ss_pred             CCC-----------------------cc---------------ee------eeeeeecc-----------CCCCCCCcce
Confidence            100                       00               00      00001000           1113577899


Q ss_pred             EEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCce
Q 005656          207 ACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDL  286 (685)
Q Consensus       207 ~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~  286 (685)
                      +++++.+-+.+|+|..+|.|..+.-.--..+..-..    .......+|+++++..+++.++.+..-..|.+|.+.+..+
T Consensus       130 ~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~----~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p  205 (933)
T KOG2114|consen  130 SLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQD----YSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTP  205 (933)
T ss_pred             EEEEEccccEEEEEecCcEEEEEcCcchhcccccee----eeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCc
Confidence            999999999999999999999985322111111100    1114457999999998887633334456899999985553


Q ss_pred             E-EEee-cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEe-cCCCCeE
Q 005656          287 K-SRWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE-GHTDRIT  339 (685)
Q Consensus       287 ~-~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~-~h~~~I~  339 (685)
                      . ..+. ++.+..|..+++....+++++ +..+.+||....++-..|. ||.....
T Consensus       206 ~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~~~  260 (933)
T KOG2114|consen  206 SLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKKEML  260 (933)
T ss_pred             ceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCeEEEE
Confidence            3 3243 347788888887666455554 3579999998777766776 6665443

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=3.5e-06  Score=81.73  Aligned_cols=93  Identities=14%  Similarity=0.107  Sum_probs=72.3

Q ss_pred             EEEEeCCCCeeeEEeecccccCeeEEEEeCCCc-EEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCC-
Q 005656           27 ISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG-  104 (685)
Q Consensus        27 I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~-  104 (685)
                      +++.+-.+.+....+. +|...|..++|+|..+ ++..++.++.|+|.|+.+.    ..+.....| .++++++|.-|. 
T Consensus       175 v~~l~~~~fkssq~lp-~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~----~~vssy~a~-~~~wSC~wDlde~  248 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILP-GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS----CVVSSYIAY-NQIWSCCWDLDER  248 (463)
T ss_pred             eEEeccCCcchhhccc-ccchhhhhhccCccccceeeeeccCceEEEEecccc----eeeeheecc-CCceeeeeccCCc
Confidence            5555554544444444 7889999999999877 7888999999999999887    555555566 889999998875 


Q ss_pred             CEEEEEeCCCceEEEEeecCc
Q 005656          105 RHILSAGQDRAFRLFSVIQDQ  125 (685)
Q Consensus       105 ~~l~s~s~dg~i~vwd~~~~~  125 (685)
                      ++|..|-..|.|.+||++..+
T Consensus       249 h~IYaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  249 HVIYAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             ceeEEeccCceEEEEEccCCC
Confidence            466667778999999997654

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.53  E-value=2.6e-05  Score=83.05  Aligned_cols=207  Identities=14%  Similarity=0.174  Sum_probs=136.5

Q ss_pred             EccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccC-eeEEEEeCCCcEEEEecCCC-----cEEEEEecCCCCC--
Q 005656           10 FSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNA-IISLHFFANEPVLMSASADN-----SIKMWIFDTTDGD--   81 (685)
Q Consensus        10 fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~-V~~l~~sp~~~~l~s~s~D~-----~v~iWd~~~~~~~--   81 (685)
                      |++.+. .+|.|+.+|.|.+.+- +-+.++.++ ++... |..+....+..+|++.+.|.     .++||+++..++.  
T Consensus        31 ~~s~~~-~vvigt~~G~V~~Ln~-s~~~~~~fq-a~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s  107 (933)
T KOG2114|consen   31 CSSSTG-SVVIGTADGRVVILNS-SFQLIRGFQ-AYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS  107 (933)
T ss_pred             EcCCCc-eEEEeeccccEEEecc-cceeeehhe-ecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence            567666 8999999998888763 334446666 66666 55555555557888887765     4899999876322  


Q ss_pred             Ccee---Eec----ccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCce
Q 005656           82 PRLL---RFR----SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV  154 (685)
Q Consensus        82 ~~~~---~~~----~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (685)
                      +.++   +..    .....|+.+++.+.+-+.++.|-.+|.|..+.-   ...+....                      
T Consensus       108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~G---Di~RDrgs----------------------  162 (933)
T KOG2114|consen  108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKG---DILRDRGS----------------------  162 (933)
T ss_pred             cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcC---cchhcccc----------------------
Confidence            4444   221    113567889999999889999999998887632   11111000                      


Q ss_pred             eeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCC
Q 005656          155 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG  234 (685)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~  234 (685)
                                                             ...-......+|+.+++..++..++.......|.+|.+...
T Consensus       163 ---------------------------------------r~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr  203 (933)
T KOG2114|consen  163 ---------------------------------------RQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGR  203 (933)
T ss_pred             ---------------------------------------ceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCC
Confidence                                                   00000144678999999999988555555667999999844


Q ss_pred             ccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEee
Q 005656          235 ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE  291 (685)
Q Consensus       235 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  291 (685)
                      .+....       ...|...+.|.++++....+++++ +..+.+|+....++-..+.
T Consensus       204 ~p~~~~-------ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  204 TPSLKV-------LDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             Ccceee-------eccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence            422221       226778899999987665465554 4679999988766655555

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.52  E-value=0.00012  Score=67.19  Aligned_cols=62  Identities=11%  Similarity=0.026  Sum_probs=48.0

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCee-EEEEeCCCcEEEEecCCCcEEEEEecCC
Q 005656           14 GQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAII-SLHFFANEPVLMSASADNSIKMWIFDTT   78 (685)
Q Consensus        14 g~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~-~l~~sp~~~~l~s~s~D~~v~iWd~~~~   78 (685)
                      |. +++.|++.|.+++.+.++|.....+. . .+.|. .....+++.++..++.|++...-|..+.
T Consensus        63 gd-fVV~GCy~g~lYfl~~~tGs~~w~f~-~-~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~  125 (354)
T KOG4649|consen   63 GD-FVVLGCYSGGLYFLCVKTGSQIWNFV-I-LETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTY  125 (354)
T ss_pred             CC-EEEEEEccCcEEEEEecchhheeeee-e-hhhhccceEEcCCCceEEEecCCCcEEEeccccc
Confidence            45 78899999999999999998777665 2 22232 2345678889999999999998887765

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.49  E-value=3e-05  Score=81.90  Aligned_cols=195  Identities=11%  Similarity=0.100  Sum_probs=132.6

Q ss_pred             cCCCEEEEEec-CCcEEEEECCCCccccccccccc------c-ccCCCCcCEEE-----EEEcCCCCEEEEE-ECCCeEE
Q 005656          212 ACGNFAVLGTA-GGWIERFNLQSGISRGSYLDMSE------R-SNYAHNGEVVG-----VACDSTNTLMISA-GYHGDIK  277 (685)
Q Consensus       212 ~~g~~l~~g~~-dg~i~~~d~~~~~~~~~~~~~~~------~-~~~~h~~~v~~-----l~~~~~~~~l~s~-s~dg~i~  277 (685)
                      .||+++++-.. +++|...++...+......-+..      + ....+++.|.+     +-++|+|+.+... -..+.+.
T Consensus       139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vS  218 (635)
T PRK02888        139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFT  218 (635)
T ss_pred             cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEE
Confidence            47888888774 66777777765444322211000      0 00133333433     3346677655333 3557788


Q ss_pred             EEECCCCceEEEeecCCceeEEEEeecCCEEEEEe----------------------------------------CCCeE
Q 005656          278 VWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVA----------------------------------------DDLVI  317 (685)
Q Consensus       278 iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------------------------------------~dg~I  317 (685)
                      +.|..+.+...++..+.....+.++|+|+++++.+                                        .++.|
T Consensus       219 vID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V  298 (635)
T PRK02888        219 AVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKV  298 (635)
T ss_pred             EEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEE
Confidence            89999888888888877778889999999887775                                        12457


Q ss_pred             EEEEcCC-----CeeEEEEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCc------------eeeEEeeccce
Q 005656          318 RLFDVVA-----LRMVRKFEGHTDRITDFCFSEDGKWLLSSG-MDGSLRIWDVILAR------------QIDAIHVDVSI  379 (685)
Q Consensus       318 ~i~d~~~-----~~~~~~~~~h~~~I~~l~~spdg~~l~s~s-~Dg~I~iwd~~~~~------------~i~~~~~~~~v  379 (685)
                      .++|..+     .+.+..+. -......+.+||||+++++++ .+.+|.|.|+.+.+            .+..+......
T Consensus       299 ~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP  377 (635)
T PRK02888        299 PVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP  377 (635)
T ss_pred             EEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc
Confidence            7777776     34444444 334567899999999988666 68999999998855            35555555667


Q ss_pred             EEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656          380 TALSLSPNMDVLATAHVDQNGVYLWVNRC  408 (685)
Q Consensus       380 ~~v~~spdg~~Lat~~~d~~~I~lW~~~~  408 (685)
                      ...+|+++|....+-..|. .|-.|+...
T Consensus       378 LHTaFDg~G~aytslf~ds-qv~kwn~~~  405 (635)
T PRK02888        378 LHTAFDGRGNAYTTLFLDS-QIVKWNIEA  405 (635)
T ss_pred             ceEEECCCCCEEEeEeecc-eeEEEehHH
Confidence            7889999999888888886 999999765

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.42  E-value=9.8e-06  Score=85.56  Aligned_cols=183  Identities=13%  Similarity=0.113  Sum_probs=127.4

Q ss_pred             ccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCc
Q 005656           46 DNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ  125 (685)
Q Consensus        46 ~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~  125 (685)
                      ...++|++++  ++.++-|+.+|.|++.+.+..     . .....|+..      .-+|.+++||+.||.|.|..+.+++
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-----~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~  104 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN-----P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDD  104 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCCc-----c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCc
Confidence            4567777776  679999999999999977643     1 222344443      4579999999999999999887776


Q ss_pred             eeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCe
Q 005656          126 QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAV  205 (685)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v  205 (685)
                      ....+                                                                     ....++
T Consensus       105 ~~~~~---------------------------------------------------------------------df~rpi  115 (846)
T KOG2066|consen  105 EITQY---------------------------------------------------------------------DFKRPI  115 (846)
T ss_pred             cceeE---------------------------------------------------------------------ecCCcc
Confidence            55444                                                                     335678


Q ss_pred             EEEEEccC-----CCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 005656          206 KACTISAC-----GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD  280 (685)
Q Consensus       206 ~~~~~s~~-----g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd  280 (685)
                      .+++++|+     .+.+++|+..| +.++.-.=-......      ......|+|.++.|.  |.+++-++.+| |++||
T Consensus       116 ksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v------~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd  185 (846)
T KOG2066|consen  116 KSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV------VLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYD  185 (846)
T ss_pred             eeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce------eeecCccceEEEEec--CcEEEEecCCC-cEEEe
Confidence            89999997     57889999988 777642211111000      122567899999996  66788877555 89999


Q ss_pred             CCCCceEEEeecCC-------ceeEEEEeecCCEEEEEeCCCeEEEEEcC
Q 005656          281 FKGRDLKSRWEVGC-------SLVKIVYHRVNGLLATVADDLVIRLFDVV  323 (685)
Q Consensus       281 ~~~~~~~~~~~~~~-------~i~~~~~~~~~~~l~~~~~dg~I~i~d~~  323 (685)
                      +.+++.+..+..+.       -...+.|.++ ..|+.|-. .+|+|..++
T Consensus       186 ~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~-~~LVIGW~-d~v~i~~I~  233 (846)
T KOG2066|consen  186 TPTRQRLTNIPPPSQSVRPELFPPHLHWQDE-DRLVIGWG-DSVKICSIK  233 (846)
T ss_pred             ccccceeeccCCCCCCCCcccCCCceEecCC-CeEEEecC-CeEEEEEEe
Confidence            99988887766542       2335666654 45555554 478888877

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.41  E-value=0.00093  Score=72.26  Aligned_cols=319  Identities=11%  Similarity=0.107  Sum_probs=166.8

Q ss_pred             EEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeE----------EEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeE
Q 005656           17 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIIS----------LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLR   86 (685)
Q Consensus        17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~----------l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~   86 (685)
                      .|++++.++.|.-.|..+|+.+-.....-...+..          +++.  +..++.++.|+.+.-.|..++.    .+-
T Consensus        71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALDa~TGk----~~W  144 (527)
T TIGR03075        71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTLDARLVALDAKTGK----VVW  144 (527)
T ss_pred             EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEEcCCCEEEEEECCCCC----EEe
Confidence            56667778899999999999887765211111111          1222  3456677788888888777663    332


Q ss_pred             ecc--cCC--CCCeEEEEecCCCEEEEEe------CCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceee
Q 005656           87 FRS--GHS--APPLCIRFYANGRHILSAG------QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA  156 (685)
Q Consensus        87 ~~~--~h~--~~v~~i~~~~~~~~l~s~s------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (685)
                      ...  .+.  ..+++--..-++ .++.+.      .+|.|..+|..+++..-.+...........       ....++  
T Consensus       145 ~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~-------~~~~~~--  214 (527)
T TIGR03075       145 SKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLD-------KADKPV--  214 (527)
T ss_pred             ecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccc-------cccccc--
Confidence            211  111  111111011134 455543      268999999999987766542210000000       000000  


Q ss_pred             eecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecC-------------
Q 005656          157 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG-------------  223 (685)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d-------------  223 (685)
                        ........|..-....                         +....=..+++.+..+.+++++.+             
T Consensus       215 --~~~~~~~tw~~~~~~~-------------------------gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdn  267 (527)
T TIGR03075       215 --GGEPGAKTWPGDAWKT-------------------------GGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDN  267 (527)
T ss_pred             --ccccccCCCCCCcccc-------------------------CCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCC
Confidence              0000000110000000                         001111233455555555555422             


Q ss_pred             ---CcEEEEECCCCccccccccccccccC-CCCcCEEEEEEcCCCC---EEEEEECCCeEEEEECCCCceEEE-------
Q 005656          224 ---GWIERFNLQSGISRGSYLDMSERSNY-AHNGEVVGVACDSTNT---LMISAGYHGDIKVWDFKGRDLKSR-------  289 (685)
Q Consensus       224 ---g~i~~~d~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~---~l~s~s~dg~i~iwd~~~~~~~~~-------  289 (685)
                         ..|.-.|+++|+..-.|......... .-.....-+.+..+|+   .++.+..+|.+++.|-.+++++..       
T Consensus       268 l~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~  347 (527)
T TIGR03075       268 LYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTV  347 (527)
T ss_pred             ccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCc
Confidence               15777888888887776432111000 0001112223334665   677889999999999999987621       


Q ss_pred             -e----ecC--Cce----------------------------eEEEEeecCCEEEEEeCC--------------------
Q 005656          290 -W----EVG--CSL----------------------------VKIVYHRVNGLLATVADD--------------------  314 (685)
Q Consensus       290 -~----~~~--~~i----------------------------~~~~~~~~~~~l~~~~~d--------------------  314 (685)
                       +    ...  .++                            ..++++|+..++++...+                    
T Consensus       348 ~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~  427 (527)
T TIGR03075       348 NWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLG  427 (527)
T ss_pred             ccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceec
Confidence             1    000  000                            125666666655544333                    


Q ss_pred             -------------CeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccce
Q 005656          315 -------------LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSI  379 (685)
Q Consensus       315 -------------g~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v  379 (685)
                                   |.+.-+|+.+++.+-+........... ..-.+..++.++.||.++.+|..+|+.+-.++....+
T Consensus       428 ~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~  504 (527)
T TIGR03075       428 AGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGI  504 (527)
T ss_pred             cccccCCCCCCCceeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCc
Confidence                         457788888888777665322111121 1224557777888999999999999999988876653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.40  E-value=2.5e-05  Score=86.30  Aligned_cols=192  Identities=13%  Similarity=0.083  Sum_probs=132.7

Q ss_pred             CCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005656          202 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF  281 (685)
Q Consensus       202 ~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~  281 (685)
                      ...|.++.|..+++.+++++..|.|.+.|..+......-         .-...|.+++|+|+++.++..+..+++.+-+-
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg---------~vd~GI~aaswS~Dee~l~liT~~~tll~mT~  138 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVG---------NVDNGISAASWSPDEELLALITGRQTLLFMTK  138 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccceeeee---------eccCceEEEeecCCCcEEEEEeCCcEEEEEec
Confidence            368999999999999999999999999988776543221         34578999999999999998888788766432


Q ss_pred             C----C-------------------CceEEEeec----------------------CCceeEEEEeecCCEEEEE-----
Q 005656          282 K----G-------------------RDLKSRWEV----------------------GCSLVKIVYHRVNGLLATV-----  311 (685)
Q Consensus       282 ~----~-------------------~~~~~~~~~----------------------~~~i~~~~~~~~~~~l~~~-----  311 (685)
                      .    .                   |+....+.+                      +..-+.+.|--||.++|+.     
T Consensus       139 ~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~  218 (1265)
T KOG1920|consen  139 DFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESE  218 (1265)
T ss_pred             cccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEecc
Confidence            1    1                   111112221                      1223458899999999984     


Q ss_pred             eCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEe---CCCcEEEEEcCCCceeeEE----eeccc-eEEEE
Q 005656          312 ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG---MDGSLRIWDVILARQIDAI----HVDVS-ITALS  383 (685)
Q Consensus       312 ~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s---~Dg~I~iwd~~~~~~i~~~----~~~~~-v~~v~  383 (685)
                      .....|+|||.+ |..-..-..-.+.=.+++|-|.|.++++-.   .|+.|.+|.- +|-....+    ..+.. |..++
T Consensus       219 ~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~  296 (1265)
T KOG1920|consen  219 TGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELA  296 (1265)
T ss_pred             CCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheee
Confidence            233799999987 433222222233345789999999998763   5668999984 34333333    22333 89999


Q ss_pred             EcCCCCeEEE---EEeCCCeEEEEE
Q 005656          384 LSPNMDVLAT---AHVDQNGVYLWV  405 (685)
Q Consensus       384 ~spdg~~Lat---~~~d~~~I~lW~  405 (685)
                      |+.++..||+   ..... .|++|.
T Consensus       297 Wns~sdiLAv~~~~~e~~-~v~lwt  320 (1265)
T KOG1920|consen  297 WNSNSDILAVVTSNLENS-LVQLWT  320 (1265)
T ss_pred             ecCCCCceeeeecccccc-eEEEEE
Confidence            9999999998   33333 599995

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.39  E-value=0.00072  Score=67.62  Aligned_cols=297  Identities=17%  Similarity=0.154  Sum_probs=125.4

Q ss_pred             EEccCCCCEEEEEeCCCc--EEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeE
Q 005656            9 AFSSDGQPLLASGASSGV--ISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLR   86 (685)
Q Consensus         9 ~fspdg~~~latg~~dg~--I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~   86 (685)
                      +|.+||+.+|.++..+|.  +.+.|+++++..+... +-........++|+++.++-......|+--|+++.  +.+.+.
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTd-g~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~--e~~~vy  118 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTD-GPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTL--EERVVY  118 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE----SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT----EEEEE
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECcc-CCCCCccceEEecCCCeEEEEECCCeEEEEECCcC--cEEEEE
Confidence            578899867777766664  6666889998887766 33233446777888888766555556655555554  222332


Q ss_pred             ecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccC
Q 005656           87 FRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERD  166 (685)
Q Consensus        87 ~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (685)
                      ..  ....+-...|..+        .|++..+---........+..  .. ....+..     ..+              
T Consensus       119 ~~--p~~~~g~gt~v~n--------~d~t~~~g~e~~~~d~~~l~~--~~-~f~e~~~-----a~p--------------  166 (386)
T PF14583_consen  119 EV--PDDWKGYGTWVAN--------SDCTKLVGIEISREDWKPLTK--WK-GFREFYE-----ARP--------------  166 (386)
T ss_dssp             E----TTEEEEEEEEE---------TTSSEEEEEEEEGGG-----S--HH-HHHHHHH-----C----------------
T ss_pred             EC--CcccccccceeeC--------CCccEEEEEEEeehhccCccc--cH-HHHHHHh-----hCC--------------
Confidence            22  2333333444322        223222111111111111100  00 0000000     000              


Q ss_pred             CcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCC-------cEEEEECCCCccccc
Q 005656          167 WCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG-------WIERFNLQSGISRGS  239 (685)
Q Consensus       167 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg-------~i~~~d~~~~~~~~~  239 (685)
                      -..++......+...+-          .     .....+..+.++|....++.=+..|       .|.+.+.........
T Consensus       167 ~~~i~~idl~tG~~~~v----------~-----~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v  231 (386)
T PF14583_consen  167 HCRIFTIDLKTGERKVV----------F-----EDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKV  231 (386)
T ss_dssp             -EEEEEEETTT--EEEE----------E-----EESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EES
T ss_pred             CceEEEEECCCCceeEE----------E-----ecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceee
Confidence            01111111111111110          0     2345677888888665555544333       344445443333222


Q ss_pred             cccccccccCCCCcCEEEEEEcCCCCEEEEEE-----CCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCC
Q 005656          240 YLDMSERSNYAHNGEVVGVACDSTNTLMISAG-----YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD  314 (685)
Q Consensus       240 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-----~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  314 (685)
                      ...       .....+..=-|.|+|..+..-+     .+..|.-+|..+++.......+ ....+-.+++|++++-=+.|
T Consensus       232 ~~~-------~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p-~~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  232 HRR-------MEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP-WCSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             S----------TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE--
T ss_pred             ecC-------CCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCC-ceeeeEEcCCCCEEEecCCC
Confidence            210       1123445556889998765533     2446777888887665444433 34566667888877653333


Q ss_pred             ----------------CeEEEEEcCCCeeEEEEecCC----------C-CeEEEEEcCCCCEEEEE-eCCCcEEEEEc
Q 005656          315 ----------------LVIRLFDVVALRMVRKFEGHT----------D-RITDFCFSEDGKWLLSS-GMDGSLRIWDV  364 (685)
Q Consensus       315 ----------------g~I~i~d~~~~~~~~~~~~h~----------~-~I~~l~~spdg~~l~s~-s~Dg~I~iwd~  364 (685)
                                      ..|+++++..++... +..|.          . .=....|||||++++-. ...|...||-+
T Consensus       304 ~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~-l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v  380 (386)
T PF14583_consen  304 APVDVADAGGYKIENDPWIYLFDVEAGRFRK-LARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV  380 (386)
T ss_dssp             -----------------EEEEEETTTTEEEE-EEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred             CCccccccccceecCCcEEEEeccccCceee-eeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence                            256778888776432 21121          1 12357899999988754 46777766643

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.39  E-value=0.001  Score=69.09  Aligned_cols=279  Identities=11%  Similarity=0.109  Sum_probs=185.3

Q ss_pred             EEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEec-CCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCC
Q 005656           27 ISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR  105 (685)
Q Consensus        27 I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s-~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~  105 (685)
                      +.+++..+......+. .+. ....+...+++..+.... ....+..-+..  ..  ........-......+..++.+.
T Consensus        13 ~~v~~~~~~~~~~~~~-~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~--~n--~~~~~~~~g~~~p~~i~v~~~~~   86 (381)
T COG3391          13 VSVINTGTNKVTAAIS-LGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDAT--SN--TVTQSLSVGGVYPAGVAVNPAGN   86 (381)
T ss_pred             eEEEeecccEEEEEee-cCC-CCceeEEcCccCEEEEEeecCceeeecccc--cc--eeeeeccCCCccccceeeCCCCC
Confidence            7788877777766665 333 567788888885443332 22233333222  11  11111111114556788888877


Q ss_pred             EEEE-EeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEE
Q 005656          106 HILS-AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR  184 (685)
Q Consensus       106 ~l~s-~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~  184 (685)
                      .++. ...++.|.+.|..+.........                                                    
T Consensus        87 ~vyv~~~~~~~v~vid~~~~~~~~~~~v----------------------------------------------------  114 (381)
T COG3391          87 KVYVTTGDSNTVSVIDTATNTVLGSIPV----------------------------------------------------  114 (381)
T ss_pred             eEEEecCCCCeEEEEcCcccceeeEeee----------------------------------------------------
Confidence            5554 44468899998665554443321                                                    


Q ss_pred             cCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec---CCcEEEEECCCCccccccccccccccCCCCcCEEEEEEc
Q 005656          185 LQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA---GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACD  261 (685)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~---dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  261 (685)
                                       ......++++++++.++++..   ++.+.+.|..++.......        .-..+ ..++++
T Consensus       115 -----------------G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~--------vG~~P-~~~a~~  168 (381)
T COG3391         115 -----------------GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP--------VGNTP-TGVAVD  168 (381)
T ss_pred             -----------------ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe--------cCCCc-ceEEEC
Confidence                             124568899999999888776   6899999999888877643        11123 899999


Q ss_pred             CCCCEEEEEE-CCCeEEEEECCCCceEE-----EeecCCceeEEEEeecCCEEEEEeCC---CeEEEEEcCCCeeEEEEe
Q 005656          262 STNTLMISAG-YHGDIKVWDFKGRDLKS-----RWEVGCSLVKIVYHRVNGLLATVADD---LVIRLFDVVALRMVRKFE  332 (685)
Q Consensus       262 ~~~~~l~s~s-~dg~i~iwd~~~~~~~~-----~~~~~~~i~~~~~~~~~~~l~~~~~d---g~I~i~d~~~~~~~~~~~  332 (685)
                      |+|..++.+. .++.|.+.|..+.....     ..........+.++|+|..+.+....   +.+...|..++.....-.
T Consensus       169 p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~  248 (381)
T COG3391         169 PDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDL  248 (381)
T ss_pred             CCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecc
Confidence            9999766665 78999999987766653     23334556788999999976666554   599999999988766522


Q ss_pred             cCCC-CeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCceeeEEeeccc----eEEEEEcCCCC
Q 005656          333 GHTD-RITDFCFSEDGKWLLSSG-MDGSLRIWDVILARQIDAIHVDVS----ITALSLSPNMD  389 (685)
Q Consensus       333 ~h~~-~I~~l~~spdg~~l~s~s-~Dg~I~iwd~~~~~~i~~~~~~~~----v~~v~~spdg~  389 (685)
                      .-.. ....+.++|+|+++.+.. ..+.+.+-|..+......+.....    +..+++.+...
T Consensus       249 ~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  311 (381)
T COG3391         249 PVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLYD  311 (381)
T ss_pred             ccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeecc
Confidence            1111 566789999999888874 448899999998888777654433    66666666543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.34  E-value=7e-06  Score=86.66  Aligned_cols=72  Identities=24%  Similarity=0.443  Sum_probs=64.1

Q ss_pred             EEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCC
Q 005656            5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT   78 (685)
Q Consensus         5 V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~   78 (685)
                      +++++|+|..- +||.|-.-|.+.+|...+.+...... .|..+|..+.||++|..|+|+..-|.|.+|..+..
T Consensus        62 atSLCWHpe~~-vLa~gwe~g~~~v~~~~~~e~htv~~-th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~  133 (1416)
T KOG3617|consen   62 ATSLCWHPEEF-VLAQGWEMGVSDVQKTNTTETHTVVE-THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVI  133 (1416)
T ss_pred             hhhhccChHHH-HHhhccccceeEEEecCCceeeeecc-CCCCCceeEEecCCCCeEEEcCCCceeEEEEeeec
Confidence            57889999866 89999999999999988877766665 89999999999999999999999999999988753

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.32  E-value=0.0011  Score=68.73  Aligned_cols=94  Identities=14%  Similarity=0.137  Sum_probs=74.1

Q ss_pred             EEEECCCCce----EEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEE
Q 005656          277 KVWDFKGRDL----KSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLS  352 (685)
Q Consensus       277 ~iwd~~~~~~----~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s  352 (685)
                      .+|++...++    +..+...+.+.+++++|+...++.|+.||+|.+||...+...  +..+.-.++.++|+|+|..+++
T Consensus       239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V  316 (545)
T PF11768_consen  239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVV  316 (545)
T ss_pred             EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEE
Confidence            4566655443    234556789999999999999999999999999998776332  3334556889999999999999


Q ss_pred             EeCCCcEEEEEcCCCceeeE
Q 005656          353 SGMDGSLRIWDVILARQIDA  372 (685)
Q Consensus       353 ~s~Dg~I~iwd~~~~~~i~~  372 (685)
                      |+..|.+.+||+.-+.....
T Consensus       317 ~s~qGelQ~FD~ALspi~~q  336 (545)
T PF11768_consen  317 GSEQGELQCFDMALSPIKMQ  336 (545)
T ss_pred             EcCCceEEEEEeecCcccee
Confidence            99999999999976554333

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.32  E-value=0.00026  Score=69.39  Aligned_cols=256  Identities=16%  Similarity=0.182  Sum_probs=145.3

Q ss_pred             EEEEccCCCCEEEEEe----------CCCcEEEEeCCCCeeeEEeeccc--cc----CeeEEEEeCCCcEEEEe--cCCC
Q 005656            7 ALAFSSDGQPLLASGA----------SSGVISIWNLEKRRLQSVIREAH--DN----AIISLHFFANEPVLMSA--SADN   68 (685)
Q Consensus         7 ~l~fspdg~~~latg~----------~dg~I~vwd~~~~~~~~~~~~~h--~~----~V~~l~~sp~~~~l~s~--s~D~   68 (685)
                      .+..||||+ .+++++          ..-.|.+||..+-.....+....  ..    ....++++.|+++++..  +--.
T Consensus        40 ~~~~spdgk-~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~  118 (342)
T PF06433_consen   40 NVALSPDGK-TIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT  118 (342)
T ss_dssp             EEEE-TTSS-EEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred             ceeECCCCC-EEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence            467899999 666532          34469999999987766544221  11    23446778888876654  3456


Q ss_pred             cEEEEEecCCCCCCceeEecccCCCCCeEEEEecC-CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccccc
Q 005656           69 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEE  147 (685)
Q Consensus        69 ~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (685)
                      +|.|-|+...    +.+....    ..-|.-..|. .+-+.+.|.||.+.-..+........-...              
T Consensus       119 SVtVVDl~~~----kvv~ei~----~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~--------------  176 (342)
T PF06433_consen  119 SVTVVDLAAK----KVVGEID----TPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTK--------------  176 (342)
T ss_dssp             EEEEEETTTT----EEEEEEE----GTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEE--------------
T ss_pred             eEEEEECCCC----ceeeeec----CCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeecc--------------
Confidence            7778877765    5554432    1223333443 346888899999999888744332211000              


Q ss_pred             ccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEE
Q 005656          148 ELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIE  227 (685)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~  227 (685)
                                                        +++.              .....+..-+++..+..++.-+.+|.|+
T Consensus       177 ----------------------------------~F~~--------------~~dp~f~~~~~~~~~~~~~F~Sy~G~v~  208 (342)
T PF06433_consen  177 ----------------------------------VFDP--------------DDDPLFEHPAYSRDGGRLYFVSYEGNVY  208 (342)
T ss_dssp             ----------------------------------ESST--------------TTS-B-S--EEETTTTEEEEEBTTSEEE
T ss_pred             ----------------------------------ccCC--------------CCcccccccceECCCCeEEEEecCCEEE
Confidence                                              0000              0111111223344455555566677777


Q ss_pred             EEECCCCccccccccc----cccccCCCCcCEEEEEEcCCCCEEEEEEC---CC-------eEEEEECCCCceEEEeecC
Q 005656          228 RFNLQSGISRGSYLDM----SERSNYAHNGEVVGVACDSTNTLMISAGY---HG-------DIKVWDFKGRDLKSRWEVG  293 (685)
Q Consensus       228 ~~d~~~~~~~~~~~~~----~~~~~~~h~~~v~~l~~~~~~~~l~s~s~---dg-------~i~iwd~~~~~~~~~~~~~  293 (685)
                      -.|+..........-.    ......-..+.-.-+++++....|++.-.   +|       .|.++|+.+++.+..+...
T Consensus       209 ~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~  288 (342)
T PF06433_consen  209 SADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE  288 (342)
T ss_dssp             EEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE
T ss_pred             EEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC
Confidence            7666654422111000    00000011233445777776655554321   22       4888899999999999988


Q ss_pred             CceeEEEEeecCC-EEEEE-eCCCeEEEEEcCCCeeEEEEec
Q 005656          294 CSLVKIVYHRVNG-LLATV-ADDLVIRLFDVVALRMVRKFEG  333 (685)
Q Consensus       294 ~~i~~~~~~~~~~-~l~~~-~~dg~I~i~d~~~~~~~~~~~~  333 (685)
                      .++.++..+.+.+ +|++. ..++.+.+||..+|+.++++.+
T Consensus       289 ~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  289 HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            8899999999887 55544 4579999999999999999874

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.31  E-value=0.00016  Score=75.80  Aligned_cols=117  Identities=14%  Similarity=0.192  Sum_probs=90.2

Q ss_pred             EEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCce
Q 005656            5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRL   84 (685)
Q Consensus         5 V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~   84 (685)
                      |.--+++..++ +++.|++.|.+++|+-..++....-..+-.+.+..+..+++..++|.|+..|.|.++-++.. ..+..
T Consensus        36 v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~-~p~~~  113 (726)
T KOG3621|consen   36 VKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKE-LPRDL  113 (726)
T ss_pred             EEEEEeecCCc-eEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhcc-CCCcc
Confidence            44445666677 99999999999999988877655444345566777788888888999999999999987763 33332


Q ss_pred             eEec---ccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeec
Q 005656           85 LRFR---SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ  123 (685)
Q Consensus        85 ~~~~---~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~  123 (685)
                      ....   ..|...|++++|++|+..+++|...|.|.+-.+..
T Consensus       114 ~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  114 DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            2222   23678999999999999999999999999887765

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.31  E-value=0.00017  Score=75.37  Aligned_cols=179  Identities=16%  Similarity=0.132  Sum_probs=94.7

Q ss_pred             eEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 005656          205 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR  284 (685)
Q Consensus       205 v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~  284 (685)
                      ....+|.+.++ +++-..++.|.++.--.......+.         ....+..+..   |..|...+. +.|.+||+.++
T Consensus        71 g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i~---------~~~~~~~If~---G~LL~~~~~-~~i~~yDw~~~  136 (443)
T PF04053_consen   71 GLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSIK---------LPFSVEKIFG---GNLLGVKSS-DFICFYDWETG  136 (443)
T ss_dssp             -SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT--------------SS-EEEEE----SSSEEEEET-TEEEEE-TTT-
T ss_pred             eeEEEEecCcc-EEEEECCCeEEEEEcCccccceEEc---------CCcccceEEc---CcEEEEECC-CCEEEEEhhHc
Confidence            44667888555 5555558889986333333222221         1123444433   777777664 48999999999


Q ss_pred             ceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCC-----------eeEEEEecCCCCeEEEEEcCCCCEEEEE
Q 005656          285 DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-----------RMVRKFEGHTDRITDFCFSEDGKWLLSS  353 (685)
Q Consensus       285 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~-----------~~~~~~~~h~~~I~~l~~spdg~~l~s~  353 (685)
                      +.++.+.... +..+.|+++|.+++..+.+ .+.|++....           .....+..-...|.+.+|..|  .++-.
T Consensus       137 ~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYt  212 (443)
T PF04053_consen  137 KLIRRIDVSA-VKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYT  212 (443)
T ss_dssp             -EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE
T ss_pred             ceeeEEecCC-CcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEE
Confidence            9999998764 8999999999999998865 6677664432           123333333567889999655  44444


Q ss_pred             eCCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656          354 GMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       354 s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~  405 (685)
                      +.. .++.  +..|+.-..-..+.++.=+.+.|..+.+.....|+ .|..+.
T Consensus       213 T~~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~-~v~~~~  260 (443)
T PF04053_consen  213 TSN-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYLIDRDG-NVISYE  260 (443)
T ss_dssp             -TT-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEEE-TT---EEEEE
T ss_pred             cCC-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEEEECCC-CEEEEE
Confidence            434 6775  45555444444456666667777666666666665 555554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=98.30  E-value=0.0072  Score=66.22  Aligned_cols=364  Identities=14%  Similarity=0.077  Sum_probs=200.3

Q ss_pred             CCcEEEEEEccC--CCC---EEEEEeCCCcEEEEe-CCCCeeeEEeecc---cccCeeEEEEeCCCcEEEEecCCCcEEE
Q 005656            2 RGAVTALAFSSD--GQP---LLASGASSGVISIWN-LEKRRLQSVIREA---HDNAIISLHFFANEPVLMSASADNSIKM   72 (685)
Q Consensus         2 ~~~V~~l~fspd--g~~---~latg~~dg~I~vwd-~~~~~~~~~~~~~---h~~~V~~l~~sp~~~~l~s~s~D~~v~i   72 (685)
                      ...|.|+.++|-  ++.   ++|+|..+..+.+-- +.+...+.....+   -...|.-..|-.|..+|.++..||.+..
T Consensus       530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~  609 (1096)
T KOG1897|consen  530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY  609 (1096)
T ss_pred             cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence            357899999986  333   899998766655443 3333332222101   1234555666667889999999999999


Q ss_pred             EEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccC
Q 005656           73 WIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK  152 (685)
Q Consensus        73 Wd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (685)
                      +.++...+...-.+...--..|+.--.|+..++.-+.+..|+-..+|.-...-....++....                 
T Consensus       610 fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev-----------------  672 (1096)
T KOG1897|consen  610 FVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEV-----------------  672 (1096)
T ss_pred             EEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHh-----------------
Confidence            988877553333332233456777777877665555566677766775433222222211110                 


Q ss_pred             ceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecC---------
Q 005656          153 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG---------  223 (685)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d---------  223 (685)
                         ...+......-.+.++.+..+.-.+..-|--.....+.+     ......+.+++.+....+.+.+..         
T Consensus       673 ---~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtv-----pl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~  744 (1096)
T KOG1897|consen  673 ---NHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTV-----PLGESPRRICYQESSLTFGVLSNRIESSAEYYG  744 (1096)
T ss_pred             ---hhhcccccccCCceEEEecCCceEEEEecchhhcceeee-----cCCCChhheEecccceEEEEEecccccchhhcC
Confidence               001111111222334444333332222221111111111     234455666766644444443221         


Q ss_pred             -----CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCC-CCEEEEEEC----------CCeEEEEECCCC-c-
Q 005656          224 -----GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMISAGY----------HGDIKVWDFKGR-D-  285 (685)
Q Consensus       224 -----g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~s~----------dg~i~iwd~~~~-~-  285 (685)
                           ..++++|-++-+......-    ....---.+.+..|..+ +.++++|..          .|.|.++.+..+ + 
T Consensus       745 ee~~~s~l~vlD~nTf~vl~~hef----~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L  820 (1096)
T KOG1897|consen  745 EEYEVSFLRVLDQNTFEVLSSHEF----ERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSL  820 (1096)
T ss_pred             CcceEEEEEEecCCceeEEeeccc----cccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCce
Confidence                 1356666665544432211    00011123455557666 677777642          467788877662 2 


Q ss_pred             -eEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005656          286 -LKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV  364 (685)
Q Consensus       286 -~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~  364 (685)
                       .+......+.+.++..- +|+++|.-  +..|++|+..+.+.++.-..|..++..+...-.|..++.|..=+.+.+...
T Consensus       821 ~~v~e~~v~Gav~aL~~f-ngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y  897 (1096)
T KOG1897|consen  821 ELVAETVVKGAVYALVEF-NGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQY  897 (1096)
T ss_pred             eeeeeeeeccceeehhhh-CCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEE
Confidence             22333334555554433 36665543  478999999999888877789999999999999999999987777666554


Q ss_pred             C--CCceeeEEe--eccceEEEEEcCCCCeEEEEEeCC
Q 005656          365 I--LARQIDAIH--VDVSITALSLSPNMDVLATAHVDQ  398 (685)
Q Consensus       365 ~--~~~~i~~~~--~~~~v~~v~~spdg~~Lat~~~d~  398 (685)
                      .  .|..+..-+  .+...+++.+-.+..++.+ ..++
T Consensus       898 ~~~eg~f~evArD~~p~Wmtaveil~~d~ylga-e~~g  934 (1096)
T KOG1897|consen  898 KGDEGNFEEVARDYNPNWMTAVEILDDDTYLGA-ENSG  934 (1096)
T ss_pred             eccCCceEEeehhhCccceeeEEEecCceEEee-cccc
Confidence            4  444554443  2333777777655555544 3455

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.28  E-value=0.0012  Score=63.24  Aligned_cols=213  Identities=12%  Similarity=0.120  Sum_probs=116.8

Q ss_pred             cEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCc
Q 005656            4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPR   83 (685)
Q Consensus         4 ~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~   83 (685)
                      .++.++|.|+...++|+....+.|...+. +|+.+..+.-.-.+..-.|++..++.++++.-.++.+.+.+++.......
T Consensus        23 e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~  101 (248)
T PF06977_consen   23 ELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLD  101 (248)
T ss_dssp             -EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--
T ss_pred             CccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccc
Confidence            48999999986658888889999988897 47777777633346788999998888888877789999998855432211


Q ss_pred             e-----eE--ecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCc---eeeEechhhHHHHHhhccccccccccCc
Q 005656           84 L-----LR--FRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ---QSRELSQRHVAKRARKLKMKEEELKLKP  153 (685)
Q Consensus        84 ~-----~~--~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (685)
                      .     +.  ....+...+-.++|.|.++.|+.+-.....++|.+....   ............                
T Consensus       102 ~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~----------------  165 (248)
T PF06977_consen  102 RADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD----------------  165 (248)
T ss_dssp             EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-----------------
T ss_pred             hhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccc----------------
Confidence            1     11  112355678999999988888888777777888776421   111110000000                


Q ss_pred             eeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccC-CCEEEEEecCCcEEEEECC
Q 005656          154 VIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC-GNFAVLGTAGGWIERFNLQ  232 (685)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~dg~i~~~d~~  232 (685)
                                                                  .......+.+++++|. |++++....+..|..+| .
T Consensus       166 --------------------------------------------~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~  200 (248)
T PF06977_consen  166 --------------------------------------------DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-R  200 (248)
T ss_dssp             --------------------------------------------HT--SS---EEEEETTTTEEEEEETTTTEEEEE--T
T ss_pred             --------------------------------------------ccceeccccceEEcCCCCeEEEEECCCCeEEEEC-C
Confidence                                                        0022344678888885 45666666777888888 5


Q ss_pred             CCcccccccccc-ccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEE
Q 005656          233 SGISRGSYLDMS-ERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW  279 (685)
Q Consensus       233 ~~~~~~~~~~~~-~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw  279 (685)
                      +|.....+.-.. .......-...-+|+++++|+..++ +.-+..+++
T Consensus       201 ~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f  247 (248)
T PF06977_consen  201 QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF  247 (248)
T ss_dssp             T--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred             CCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence            555444332100 0000011235779999999875554 455554443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.26  E-value=0.0023  Score=64.10  Aligned_cols=314  Identities=15%  Similarity=0.144  Sum_probs=135.4

Q ss_pred             eCCCCeeeEEeeccccc-----CeeEEEEeCCCc-EEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCC
Q 005656           31 NLEKRRLQSVIREAHDN-----AIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG  104 (685)
Q Consensus        31 d~~~~~~~~~~~~~h~~-----~V~~l~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~  104 (685)
                      |..+|..+..+. .+..     -.+.=+|.+||+ +|+++..||.-.+|.++..++....+....  ........++|++
T Consensus        16 D~~TG~~VtrLT-~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~--g~~~~g~~~s~~~   92 (386)
T PF14583_consen   16 DPDTGHRVTRLT-PPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGP--GDNTFGGFLSPDD   92 (386)
T ss_dssp             -TTT--EEEE-S--TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS---B-TTT-EE-TTS
T ss_pred             CCCCCceEEEec-CCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCC--CCCccceEEecCC
Confidence            566776666665 2222     222335678886 445555688877887776654333333322  2233356778888


Q ss_pred             CEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEE--EcCCce-EE
Q 005656          105 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTC--HMDTAQ-AY  181 (685)
Q Consensus       105 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~  181 (685)
                      +.++.......|+-.|+.+.+....+...                               .+|....+.  ..+... +.
T Consensus        93 ~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p-------------------------------~~~~g~gt~v~n~d~t~~~g  141 (386)
T PF14583_consen   93 RALYYVKNGRSLRRVDLDTLEERVVYEVP-------------------------------DDWKGYGTWVANSDCTKLVG  141 (386)
T ss_dssp             SEEEEEETTTEEEEEETTT--EEEEEE---------------------------------TTEEEEEEEEE-TTSSEEEE
T ss_pred             CeEEEEECCCeEEEEECCcCcEEEEEECC-------------------------------cccccccceeeCCCccEEEE
Confidence            88877766678888888776644333210                               111110000  011111 01


Q ss_pred             EEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEc
Q 005656          182 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACD  261 (685)
Q Consensus       182 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  261 (685)
                      +........      +.   ..      +..- +.+..+--...|...|+.+|+....+         .-...+..+.|+
T Consensus       142 ~e~~~~d~~------~l---~~------~~~f-~e~~~a~p~~~i~~idl~tG~~~~v~---------~~~~wlgH~~fs  196 (386)
T PF14583_consen  142 IEISREDWK------PL---TK------WKGF-REFYEARPHCRIFTIDLKTGERKVVF---------EDTDWLGHVQFS  196 (386)
T ss_dssp             EEEEGGG--------------S------HHHH-HHHHHC---EEEEEEETTT--EEEEE---------EESS-EEEEEEE
T ss_pred             EEEeehhcc------Cc---cc------cHHH-HHHHhhCCCceEEEEECCCCceeEEE---------ecCccccCcccC
Confidence            110000000      00   00      0000 00000011234667788887765544         344567788899


Q ss_pred             CCCCEEEEEECCC-----eEEEEECC--CCce--EEEeecCCceeEEEEeecCCEEEEEe-----CCCeEEEEEcCCCee
Q 005656          262 STNTLMISAGYHG-----DIKVWDFK--GRDL--KSRWEVGCSLVKIVYHRVNGLLATVA-----DDLVIRLFDVVALRM  327 (685)
Q Consensus       262 ~~~~~l~s~s~dg-----~i~iwd~~--~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~-----~dg~I~i~d~~~~~~  327 (685)
                      |....+++=+..|     .-+||-++  ....  +........+..=-|.|||..+..-+     .+..|.-+|+.+++.
T Consensus       197 P~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~  276 (386)
T PF14583_consen  197 PTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER  276 (386)
T ss_dssp             TTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E
T ss_pred             CCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc
Confidence            8765444433332     13566554  2222  11111224455566889998554422     244677788888765


Q ss_pred             EEEEecCCCCeEEEEEcCCCCEEEEEeCCC----------------cEEEEEcCCCceeeEEeecc-----------ceE
Q 005656          328 VRKFEGHTDRITDFCFSEDGKWLLSSGMDG----------------SLRIWDVILARQIDAIHVDV-----------SIT  380 (685)
Q Consensus       328 ~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg----------------~I~iwd~~~~~~i~~~~~~~-----------~v~  380 (685)
                      .....  ......+--++||++++-=+.|.                .|+++++..+.......+..           .=.
T Consensus       277 ~~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hP  354 (386)
T PF14583_consen  277 RRLME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHP  354 (386)
T ss_dssp             EEEEE--E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT--
T ss_pred             eEEEe--CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCC
Confidence            43222  12344556688999877444432                46678887776544333321           124


Q ss_pred             EEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656          381 ALSLSPNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       381 ~v~~spdg~~Lat~~~d~~~I~lW~  405 (685)
                      .+.|||||++++..+.-.+...||.
T Consensus       355 hp~FSPDgk~VlF~Sd~~G~~~vY~  379 (386)
T PF14583_consen  355 HPSFSPDGKWVLFRSDMEGPPAVYL  379 (386)
T ss_dssp             --EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred             CCccCCCCCEEEEECCCCCCccEEE
Confidence            6799999999988887666666664

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.25  E-value=0.0014  Score=67.97  Aligned_cols=75  Identities=12%  Similarity=0.134  Sum_probs=65.3

Q ss_pred             CCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCC
Q 005656          250 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL  325 (685)
Q Consensus       250 ~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~  325 (685)
                      .....|.+.+++|+...++.|+.||.|.+||...+..... ...-..+.++|||+|.++++|+..|.+.+||+.-.
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            6778999999999999999999999999999887643332 44567889999999999999999999999998644

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.25  E-value=0.00026  Score=74.25  Aligned_cols=125  Identities=14%  Similarity=0.014  Sum_probs=88.2

Q ss_pred             ccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeec
Q 005656           44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ  123 (685)
Q Consensus        44 ~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~  123 (685)
                      .|...|.--++...+++++.|+.-|.+.+|+-..+.  .+. ....+-.+.+..+..+++..+++.|+..|.|.++-+..
T Consensus        31 ~~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~--~~~-~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~  107 (726)
T KOG3621|consen   31 FFPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGE--MRK-LKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNK  107 (726)
T ss_pred             cCcceEEEEEeecCCceEEEecccceEEEEecCchh--hhc-ccccCccceEEEEEecchhHhhhhhcCCceEEeehhhc
Confidence            355566666777889999999999999999755442  122 22223444556667788888888889899999987755


Q ss_pred             CceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCC
Q 005656          124 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT  203 (685)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  203 (685)
                      .......                                        ...+                      ....|+.
T Consensus       108 ~~p~~~~----------------------------------------~~t~----------------------~d~~~~~  125 (726)
T KOG3621|consen  108 ELPRDLD----------------------------------------YVTP----------------------CDKSHKC  125 (726)
T ss_pred             cCCCcce----------------------------------------eecc----------------------ccccCCc
Confidence            3211110                                        0000                      0014678


Q ss_pred             CeEEEEEccCCCEEEEEecCCcEEEEECCC
Q 005656          204 AVKACTISACGNFAVLGTAGGWIERFNLQS  233 (685)
Q Consensus       204 ~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~  233 (685)
                      .|++++|++++..+++|...|.|..-.+.+
T Consensus       126 rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  126 RVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             eEEEEEecccccEEeecCCCceEEEEEech
Confidence            899999999999999999999999988887

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.23  E-value=2.7e-05  Score=83.35  Aligned_cols=179  Identities=9%  Similarity=0.152  Sum_probs=124.9

Q ss_pred             EEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCe
Q 005656           17 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPL   96 (685)
Q Consensus        17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~   96 (685)
                      .++.|+-...+..+|+.+.+..+... --.+.|+-+..  +++.+.+|...|+|.+-|..+.    +.++.+..|++.|.
T Consensus       149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~-v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~----~~iht~~aHs~siS  221 (1118)
T KOG1275|consen  149 TLIMGGLQEKLIHIDLNTEKETRTTN-VSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSF----ETIHTFDAHSGSIS  221 (1118)
T ss_pred             ceeecchhhheeeeecccceeeeeee-ccCCceEEEEe--cCcEEEeecccceEEeecCCcC----ceeeeeecccccee
Confidence            56677777778899999988877765 33444655554  5889999999999999988776    78889999999998


Q ss_pred             EEEEecCCCEEEEEeC---------CCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCC
Q 005656           97 CIRFYANGRHILSAGQ---------DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDW  167 (685)
Q Consensus        97 ~i~~~~~~~~l~s~s~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (685)
                      .+..  .|+.|++||.         |..|+|||++.-+....+.                                    
T Consensus       222 DfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~------------------------------------  263 (1118)
T KOG1275|consen  222 DFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ------------------------------------  263 (1118)
T ss_pred             eeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcc------------------------------------
Confidence            7665  5779999985         4456777776544322221                                    


Q ss_pred             cceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccC-CCEEEEEecCCcEEEEE---CCCCccccccccc
Q 005656          168 CNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC-GNFAVLGTAGGWIERFN---LQSGISRGSYLDM  243 (685)
Q Consensus       168 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~dg~i~~~d---~~~~~~~~~~~~~  243 (685)
                                                       ......-+.|.|. ...+++.+..|...+.|   +.+......+.  
T Consensus       264 ---------------------------------~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v--  308 (1118)
T KOG1275|consen  264 ---------------------------------FPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMV--  308 (1118)
T ss_pred             ---------------------------------cccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEE--
Confidence                                             0111122334442 34577778888888888   33322221111  


Q ss_pred             cccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 005656          244 SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD  280 (685)
Q Consensus       244 ~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd  280 (685)
                           ......+..++++++++.++.|..+|.|.+|.
T Consensus       309 -----~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  309 -----NPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             -----ccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence                 13345599999999999999999999999997

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.21  E-value=0.00025  Score=73.80  Aligned_cols=142  Identities=13%  Similarity=0.082  Sum_probs=91.4

Q ss_pred             eEEEEEccCCCEEEEEe-cCC--cEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE-CCC--eEEE
Q 005656          205 VKACTISACGNFAVLGT-AGG--WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHG--DIKV  278 (685)
Q Consensus       205 v~~~~~s~~g~~l~~g~-~dg--~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg--~i~i  278 (685)
                      -....|+|+|+.++... .+|  .|+++|+.++.... +.        .-.+.-..-.|+|+|+.++..+ ..|  .|.+
T Consensus       240 ~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt--------~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~  310 (425)
T COG0823         240 NGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LT--------NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYL  310 (425)
T ss_pred             cCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cc--------cCCccccCccCCCCCCEEEEEeCCCCCcceEE
Confidence            34558999998887654 344  57777888877443 21        1222223678999999887776 344  3667


Q ss_pred             EECCCCceEEEeecCCceeEEEEeecCCEEEEEeCC-Ce--EEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeC
Q 005656          279 WDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD-LV--IRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM  355 (685)
Q Consensus       279 wd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~--I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~  355 (685)
                      ++...+...+.......-..-.++|+|++++..+.. |.  |.+.|+.++..++.+. +......-.|.|+|+.+...+.
T Consensus       311 ~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~  389 (425)
T COG0823         311 YDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSG  389 (425)
T ss_pred             ECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEecc
Confidence            777766654433333333378899999988877743 43  7777777665555444 4444556688999988876654


Q ss_pred             C
Q 005656          356 D  356 (685)
Q Consensus       356 D  356 (685)
                      -
T Consensus       390 ~  390 (425)
T COG0823         390 Q  390 (425)
T ss_pred             C
Confidence            3

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.19  E-value=4.5e-05  Score=79.33  Aligned_cols=187  Identities=14%  Similarity=0.108  Sum_probs=126.1

Q ss_pred             CCCeEEEEEccCCCEEEEE---ecC-CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE-CCCe-
Q 005656          202 PTAVKACTISACGNFAVLG---TAG-GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGD-  275 (685)
Q Consensus       202 ~~~v~~~~~s~~g~~l~~g---~~d-g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~-  275 (685)
                      ...+..-.|+|++..++..   ... ..++++++.++......         ...+.-...+|+|+|+.++.+. .||. 
T Consensus       192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~---------~~~g~~~~P~fspDG~~l~f~~~rdg~~  262 (425)
T COG0823         192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL---------NFNGNNGAPAFSPDGSKLAFSSSRDGSP  262 (425)
T ss_pred             CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceee---------ccCCccCCccCCCCCCEEEEEECCCCCc
Confidence            4556677889988775443   223 46999999988766554         2233344568999998877665 5554 


Q ss_pred             -EEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCC-C--eEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEE
Q 005656          276 -IKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD-L--VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLL  351 (685)
Q Consensus       276 -i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~  351 (685)
                       |++.|+.++...+.....+.-..-.|+|+|+.++..++. |  .|.++|.+.... +.+....+.-..-.|||||++++
T Consensus       263 ~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~  341 (425)
T COG0823         263 DIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIV  341 (425)
T ss_pred             cEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEE
Confidence             677788877755433333444577899999988777654 3  677788877665 33332322223678999999999


Q ss_pred             EEeC-CCc--EEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCC
Q 005656          352 SSGM-DGS--LRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ  398 (685)
Q Consensus       352 s~s~-Dg~--I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~  398 (685)
                      ..+. +|.  |.+.|+.++..++.+........-+|.|+|+.+...+..+
T Consensus       342 ~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~~  391 (425)
T COG0823         342 FESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQG  391 (425)
T ss_pred             EEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccCC
Confidence            7764 344  7777777776666666555566778999998888776543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.18  E-value=4.8e-05  Score=79.36  Aligned_cols=177  Identities=17%  Similarity=0.196  Sum_probs=101.4

Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005656          203 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  282 (685)
Q Consensus       203 ~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~  282 (685)
                      ..+..+.++|+|+++++ +.+|.-.+|.......             ...+.-..++|.+.++ +++-...++|.++.--
T Consensus        33 ~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~-------------k~~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~   97 (443)
T PF04053_consen   33 IYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRN-------------KAFGSGLSFVWSSRNR-YAVLESSSTIKIYKNF   97 (443)
T ss_dssp             S--SEEEE-TTSSEEEE-EETTEEEEEETTTTEE-------------EEEEE-SEEEE-TSSE-EEEE-TTS-EEEEETT
T ss_pred             cCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcc-------------cccCceeEEEEecCcc-EEEEECCCeEEEEEcC
Confidence            44789999999999999 6777788887332221             2234556788988554 6666668899996322


Q ss_pred             CCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005656          283 GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIW  362 (685)
Q Consensus       283 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iw  362 (685)
                      +......+..+..+..+-.   |.+|+..+.+ .|.+||..+++.++++...  +|..+.|+++|.+++..+.+ .+.|+
T Consensus        98 ~~~~~k~i~~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il  170 (443)
T PF04053_consen   98 KNEVVKSIKLPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYIL  170 (443)
T ss_dssp             EE-TT-----SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEE
T ss_pred             ccccceEEcCCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEE
Confidence            2222223444434444433   7777777655 8999999999999999743  38999999999999988865 68888


Q ss_pred             EcCCC-----------ceeeEEee-ccceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656          363 DVILA-----------RQIDAIHV-DVSITALSLSPNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       363 d~~~~-----------~~i~~~~~-~~~v~~v~~spdg~~Lat~~~d~~~I~lW~  405 (685)
                      +....           .....+.. ...|.+.+|..| -++.|+ ..  .|+.+-
T Consensus       171 ~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT-~~--~lkYl~  221 (443)
T PF04053_consen  171 KYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTT-SN--HLKYLV  221 (443)
T ss_dssp             EE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE--TT--EEEEEE
T ss_pred             EecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEc-CC--eEEEEE
Confidence            76544           13344433 667999999776 344443 22  555553

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.18  E-value=0.0011  Score=68.29  Aligned_cols=271  Identities=9%  Similarity=0.046  Sum_probs=140.0

Q ss_pred             CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeeccc----------------ccCeeEEEEeCCCcEEEEecC
Q 005656            3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAH----------------DNAIISLHFFANEPVLMSASA   66 (685)
Q Consensus         3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h----------------~~~V~~l~~sp~~~~l~s~s~   66 (685)
                      +.+....|||+|+ .+|-.. ++.|.+++..++...+....|-                -+.-..+.||||+++|+....
T Consensus        43 ~~~~~~~~sP~g~-~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~  120 (353)
T PF00930_consen   43 PKLQDAKWSPDGK-YIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF  120 (353)
T ss_dssp             TTBSEEEE-SSST-EEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred             cccccceeecCCC-eeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence            3566789999999 666554 6889999998886555444230                112357889999998887654


Q ss_pred             -CCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccc
Q 005656           67 -DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK  145 (685)
Q Consensus        67 -D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  145 (685)
                       +..|+.+.+........       -...+..+.+-.-|......    .+.++++.+++....-.....          
T Consensus       121 d~~~v~~~~~~~~~~~~~-------~yp~~~~~~YPk~G~~np~v----~l~v~~~~~~~~~~~~~~~~~----------  179 (353)
T PF00930_consen  121 DEREVPEYPLPDYSPPDS-------QYPEVESIRYPKAGDPNPRV----SLFVVDLASGKTTELDPPNSL----------  179 (353)
T ss_dssp             E-TTS-EEEEEEESSSTE-------SS-EEEEEE--BTTS---EE----EEEEEESSSTCCCEE---HHH----------
T ss_pred             CCcCCceEEeeccCCccc-------cCCcccccccCCCCCcCCce----EEEEEECCCCcEEEeeecccc----------
Confidence             45565554332211000       00112333332122222111    356677765543211100000          


Q ss_pred             ccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecC--
Q 005656          146 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG--  223 (685)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d--  223 (685)
                                                                           ......+..+.|+++++.+++...+  
T Consensus       180 -----------------------------------------------------~~~~~yl~~v~W~~d~~~l~~~~~nR~  206 (353)
T PF00930_consen  180 -----------------------------------------------------NPQDYYLTRVGWSPDGKRLWVQWLNRD  206 (353)
T ss_dssp             -----------------------------------------------------HTSSEEEEEEEEEETTEEEEEEEEETT
T ss_pred             -----------------------------------------------------CCCccCcccceecCCCcEEEEEEcccC
Confidence                                                                 0224557788898988844444332  


Q ss_pred             ---CcEEEEECCCCccccccccccccccCCCCcCEEEEEEc-CCCC-EEEEEECCCe--EEEEECCCCceEEEeecCCce
Q 005656          224 ---GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACD-STNT-LMISAGYHGD--IKVWDFKGRDLKSRWEVGCSL  296 (685)
Q Consensus       224 ---g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~~-~l~s~s~dg~--i~iwd~~~~~~~~~~~~~~~i  296 (685)
                         ..+.++|..++..........    .+--..-....+. +++. ++.....||.  |.+++..++.........-.|
T Consensus       207 q~~~~l~~~d~~tg~~~~~~~e~~----~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V  282 (353)
T PF00930_consen  207 QNRLDLVLCDASTGETRVVLEETS----DGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEV  282 (353)
T ss_dssp             STEEEEEEEEECTTTCEEEEEEES----SSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-E
T ss_pred             CCEEEEEEEECCCCceeEEEEecC----CcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceee
Confidence               246777887766544432110    0111122244443 5554 4445556664  666666666655444444556


Q ss_pred             eE-EEEeecCCEEE-EEeCC----CeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE
Q 005656          297 VK-IVYHRVNGLLA-TVADD----LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS  353 (685)
Q Consensus       297 ~~-~~~~~~~~~l~-~~~~d----g~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~  353 (685)
                      .. +.++++++.|+ ++..+    ..++..++..+..+..+....+.-..+.|||+|++++-.
T Consensus       283 ~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~  345 (353)
T PF00930_consen  283 TSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDT  345 (353)
T ss_dssp             EEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred             cccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEE
Confidence            44 67788877544 45442    367777777334455565443333689999999988743

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.18  E-value=0.0032  Score=62.59  Aligned_cols=243  Identities=14%  Similarity=0.141  Sum_probs=137.2

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCce--eE----
Q 005656           13 DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRL--LR----   86 (685)
Q Consensus        13 dg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~--~~----   86 (685)
                      .++ .|+.|+.+| +.+++.........+.  +...|..+...|+-+.|++-+ |+.+.+++++.-......  ..    
T Consensus         6 ~~~-~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~   80 (275)
T PF00780_consen    6 WGD-RLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS   80 (275)
T ss_pred             CCC-EEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence            345 788999888 9999993333222322  344599999999888777664 599999998765322210  00    


Q ss_pred             ----ecccCCCCCeEEE--EecCCCEEEEEeCCCceEEEEeecCceee--EechhhHHHHHhhccccccccccCceeeee
Q 005656           87 ----FRSGHSAPPLCIR--FYANGRHILSAGQDRAFRLFSVIQDQQSR--ELSQRHVAKRARKLKMKEEELKLKPVIAFD  158 (685)
Q Consensus        87 ----~~~~h~~~v~~i~--~~~~~~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (685)
                          ........+...+  -...+...+.+.....|.+|.........  .+.                           
T Consensus        81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~k---------------------------  133 (275)
T PF00780_consen   81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLK---------------------------  133 (275)
T ss_pred             ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeE---------------------------
Confidence                0111223333333  11233344444445578888776532110  100                           


Q ss_pred             cccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccc
Q 005656          159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG  238 (685)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~  238 (685)
                                                        ..     ..+..+.+++|.  ++.+++|..++ ..+.|+.++....
T Consensus       134 ----------------------------------e~-----~lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~  171 (275)
T PF00780_consen  134 ----------------------------------EI-----SLPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSE  171 (275)
T ss_pred             ----------------------------------EE-----EcCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceE
Confidence                                              00     224667888887  77888888655 8888998776644


Q ss_pred             cccccccc----ccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceE-EEeecCCceeEEEEeecCCEEEEEeC
Q 005656          239 SYLDMSER----SNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLK-SRWEVGCSLVKIVYHRVNGLLATVAD  313 (685)
Q Consensus       239 ~~~~~~~~----~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~  313 (685)
                      .+......    .......++..+.. +++.+|++-  |..-.+.|....... ..+.....+..+++.  ..+|++.+.
T Consensus       172 l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~~G~~~r~~~i~W~~~p~~~~~~--~pyli~~~~  246 (275)
T PF00780_consen  172 LLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNKNGEPSRKSTIQWSSAPQSVAYS--SPYLIAFSS  246 (275)
T ss_pred             EeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcCCCCcCcccEEEcCCchhEEEEE--CCEEEEECC
Confidence            33210000    00011223333443 345555543  444455555433222 345555667777774  456666555


Q ss_pred             CCeEEEEEcCCCeeEEEEecCC
Q 005656          314 DLVIRLFDVVALRMVRKFEGHT  335 (685)
Q Consensus       314 dg~I~i~d~~~~~~~~~~~~h~  335 (685)
                       +.|.||++.+++.++++....
T Consensus       247 -~~iEV~~~~~~~lvQ~i~~~~  267 (275)
T PF00780_consen  247 -NSIEVRSLETGELVQTIPLPN  267 (275)
T ss_pred             -CEEEEEECcCCcEEEEEECCC
Confidence             559999999999999887543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.14  E-value=0.00026  Score=73.00  Aligned_cols=275  Identities=13%  Similarity=0.140  Sum_probs=133.5

Q ss_pred             cEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeE-EeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCC---
Q 005656            4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQS-VIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD---   79 (685)
Q Consensus         4 ~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~-~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~---   79 (685)
                      .|++++|+++.. -||+|...|.|.||.+...+... .-    ..+-....|.+-      ...++.-.+-|+....   
T Consensus         3 ~v~~vs~a~~t~-Elav~~~~GeVv~~k~~~n~~~~~~~----~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~   71 (395)
T PF08596_consen    3 SVTHVSFAPETL-ELAVGLESGEVVLFKFGKNQNYGNRE----QPPDLDYNFRRF------SLNNSPGKLTDISDRAPPS   71 (395)
T ss_dssp             -EEEEEEETTTT-EEEEEETTS-EEEEEEEE----------------------S--------GGGSS-SEEE-GGG--TT
T ss_pred             eEEEEEecCCCc-eEEEEccCCcEEEEEcccCCCCCccC----CCcccCcccccc------cccCCCcceEEehhhCCcc
Confidence            589999999866 68999999999999876544332 10    011111111110      0011112223332211   


Q ss_pred             --CCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeee
Q 005656           80 --GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF  157 (685)
Q Consensus        80 --~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (685)
                        ....+...+....++|++++.+.=| +++.|..+|.+.|.|++....+..-.....                      
T Consensus        72 ~~~gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~----------------------  128 (395)
T PF08596_consen   72 LKEGFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRES----------------------  128 (395)
T ss_dssp             -SEEEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG-----------------------
T ss_pred             cccccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeecccccc----------------------
Confidence              1123344445568999999997444 999999999999999976665544221110                      


Q ss_pred             ecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEc-----cCC---CEEEEEecCCcEEEE
Q 005656          158 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS-----ACG---NFAVLGTAGGWIERF  229 (685)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~g---~~l~~g~~dg~i~~~  229 (685)
                                                            .........++++.|+     .|+   -.+++|+..|.+.+|
T Consensus       129 --------------------------------------~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~f  170 (395)
T PF08596_consen  129 --------------------------------------FLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTF  170 (395)
T ss_dssp             ---------------------------------------T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEE
T ss_pred             --------------------------------------ccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEE
Confidence                                                  0000223344555544     222   467888999999888


Q ss_pred             ECCC---CccccccccccccccCCCCcCEEEEE-EcCC-----------------C---CEEEEEECCCeEEEEECCCCc
Q 005656          230 NLQS---GISRGSYLDMSERSNYAHNGEVVGVA-CDST-----------------N---TLMISAGYHGDIKVWDFKGRD  285 (685)
Q Consensus       230 d~~~---~~~~~~~~~~~~~~~~~h~~~v~~l~-~~~~-----------------~---~~l~s~s~dg~i~iwd~~~~~  285 (685)
                      .+.-   +.....+..    ....+.+.|..+. ++.+                 +   .-++....+..++++...+.+
T Consensus       171 kIlp~~~g~f~v~~~~----~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k  246 (395)
T PF08596_consen  171 KILPSSNGRFSVQFAG----ATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSK  246 (395)
T ss_dssp             EEEE-GGG-EEEEEEE----EE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---
T ss_pred             EEecCCCCceEEEEee----ccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCc
Confidence            7642   222212211    1124455555544 2211                 0   123334447889999998777


Q ss_pred             eEEEeecC-CceeEEEE-----eecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCC----CCeEEEEEcCCCCEEEEEe
Q 005656          286 LKSRWEVG-CSLVKIVY-----HRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT----DRITDFCFSEDGKWLLSSG  354 (685)
Q Consensus       286 ~~~~~~~~-~~i~~~~~-----~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~----~~I~~l~~spdg~~l~s~s  354 (685)
                      ........ .....+.+     ...+..|++-..+|.|++|.+..-+.+..+.-+.    ..+...+++++|..++-.+
T Consensus       247 ~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~g  325 (395)
T PF08596_consen  247 GAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTG  325 (395)
T ss_dssp             EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-S
T ss_pred             ccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeC
Confidence            65544422 22233344     2356688888999999999999988888776532    1234456666776555444

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=98.14  E-value=0.015  Score=63.90  Aligned_cols=362  Identities=13%  Similarity=0.112  Sum_probs=181.6

Q ss_pred             cEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCC------cEEEEecCCCcEEEEEecC
Q 005656            4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANE------PVLMSASADNSIKMWIFDT   77 (685)
Q Consensus         4 ~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~------~~l~s~s~D~~v~iWd~~~   77 (685)
                      .+++...+.+.. -++.++.++.+...+...+.+....+......|.|+.++|-|      ++++.|..+..+.+--+..
T Consensus       489 ~~ti~~~~~n~s-qVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~p  567 (1096)
T KOG1897|consen  489 KITIGVVSANAS-QVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLP  567 (1096)
T ss_pred             ceEEEEEeecce-EEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECC
Confidence            445555555544 445555556666666666654444333456789999999742      2788887776666554433


Q ss_pred             CCCCCceeEeccc--CCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCcee
Q 005656           78 TDGDPRLLRFRSG--HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI  155 (685)
Q Consensus        78 ~~~~~~~~~~~~~--h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (685)
                      .. ...+...+.+  -...|.-..|-.|..+|+++..||.+..|-+....-...-.      +.       ..+...|+.
T Consensus       568 d~-~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~------Kk-------~~lGt~P~~  633 (1096)
T KOG1897|consen  568 DL-ILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDR------KK-------VTLGTQPIS  633 (1096)
T ss_pred             Cc-ceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccc------cc-------cccCCCCcE
Confidence            21 1111111111  12234444555678899999999999877665433211110      00       011111111


Q ss_pred             eeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEE-EEEcc--CCCEEEEEecCCcEEEEECC
Q 005656          156 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKA-CTISA--CGNFAVLGTAGGWIERFNLQ  232 (685)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~--~g~~l~~g~~dg~i~~~d~~  232 (685)
                      -.   .++......+++++ +.+.+ +|..+.+    .+..+.  .-..+.. +.|+.  .+..++.+ ..+.+.+.-+.
T Consensus       634 Lr---~f~sk~~t~vfa~s-drP~v-iY~~n~k----Lv~spl--s~kev~~~c~f~s~a~~d~l~~~-~~~~l~i~tid  701 (1096)
T KOG1897|consen  634 LR---TFSSKSRTAVFALS-DRPTV-IYSSNGK----LVYSPL--SLKEVNHMCPFNSDAYPDSLASA-NGGALTIGTID  701 (1096)
T ss_pred             EE---EEeeCCceEEEEeC-CCCEE-EEecCCc----EEEecc--chHHhhhhcccccccCCceEEEe-cCCceEEEEec
Confidence            11   11122222233332 22221 2221111    111110  0011111 11221  22333333 33445554443


Q ss_pred             CCc--cccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC-----------C---CeEEEEECCCCceEEEeecC---
Q 005656          233 SGI--SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-----------H---GDIKVWDFKGRDLKSRWEVG---  293 (685)
Q Consensus       233 ~~~--~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-----------d---g~i~iwd~~~~~~~~~~~~~---  293 (685)
                      .-+  ..++.         .-....+.+++.+....+++.+.           .   ..++++|-++.+.....+..   
T Consensus       702 ~iqkl~irtv---------pl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E  772 (1096)
T KOG1897|consen  702 EIQKLHIRTV---------PLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNE  772 (1096)
T ss_pred             chhhcceeee---------cCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccc
Confidence            211  11111         22233445555553333333221           1   13677777776665544432   


Q ss_pred             --CceeEEEEeec-CCEEEEEeC----------CCeEEEEEcCCCeeEEEEecC--CCCeEEEEEcCCCCEEEEEeCCCc
Q 005656          294 --CSLVKIVYHRV-NGLLATVAD----------DLVIRLFDVVALRMVRKFEGH--TDRITDFCFSEDGKWLLSSGMDGS  358 (685)
Q Consensus       294 --~~i~~~~~~~~-~~~l~~~~~----------dg~I~i~d~~~~~~~~~~~~h--~~~I~~l~~spdg~~l~s~s~Dg~  358 (685)
                        ..+.++.|..| +.++++|..          .|.|.+|....++.++....+  .+.+.++..- +|++||.-+  ..
T Consensus       773 ~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA~In--~~  849 (1096)
T KOG1897|consen  773 TALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLAGIN--QS  849 (1096)
T ss_pred             eeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEEecC--cE
Confidence              34555668777 668888753          478888887764333333222  3445554322 677777554  57


Q ss_pred             EEEEEcCCCceeeE-EeeccceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656          359 LRIWDVILARQIDA-IHVDVSITALSLSPNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       359 I~iwd~~~~~~i~~-~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~  405 (685)
                      |++|+..+.+.++. .....++..+...-.|+.+++|..-+ .|.+-.
T Consensus       850 vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~-Sitll~  896 (1096)
T KOG1897|consen  850 VRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMR-SITLLQ  896 (1096)
T ss_pred             EEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccc-eEEEEE
Confidence            99999998855543 34556688899999999999998776 666643

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.11  E-value=0.0024  Score=68.94  Aligned_cols=105  Identities=17%  Similarity=0.117  Sum_probs=71.8

Q ss_pred             EEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEE------------------ECCCeEE
Q 005656          216 FAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA------------------GYHGDIK  277 (685)
Q Consensus       216 ~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~------------------s~dg~i~  277 (685)
                      .+++++.+|.++.+|..+|+.+......           ...++.+| + .++.+                  ..+|.+.
T Consensus       303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~-----------~~~~~~~~-~-~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~  369 (488)
T cd00216         303 AIVHAPKNGFFYVLDRTTGKLISARPEV-----------EQPMAYDP-G-LVYLGAFHIPLGLPPQKKKRCKKPGKGGLA  369 (488)
T ss_pred             EEEEECCCceEEEEECCCCcEeeEeEee-----------ccccccCC-c-eEEEccccccccCcccccCCCCCCCceEEE
Confidence            6788899999999999999987765310           11122333 2 22221                  2467888


Q ss_pred             EEECCCCceEEEeecC---------CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEec
Q 005656          278 VWDFKGRDLKSRWEVG---------CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG  333 (685)
Q Consensus       278 iwd~~~~~~~~~~~~~---------~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~  333 (685)
                      -.|..+++.+.+....         .+...-.....+..+++++.||.++.+|..+|+.+.+++-
T Consensus       370 AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~  434 (488)
T cd00216         370 ALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRT  434 (488)
T ss_pred             EEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence            8999999888777654         1111111223567899999999999999999999888764

The alignment model contains an 8-bladed beta-propeller.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.11  E-value=0.0051  Score=64.41  Aligned_cols=129  Identities=13%  Similarity=0.127  Sum_probs=77.6

Q ss_pred             EEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecC-CCC
Q 005656          259 ACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH-TDR  337 (685)
Q Consensus       259 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h-~~~  337 (685)
                      .++.+....+....++.+.+.+-...+   .+...+++..++.||+++++|.-..+|.+.+...+-.+....+... ...
T Consensus       185 ~l~~~~~~~i~~~~g~~i~~i~~~~~~---~i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~  261 (410)
T PF04841_consen  185 LLSSDRVVEILLANGETIYIIDENSFK---QIDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSP  261 (410)
T ss_pred             EeecCcceEEEEecCCEEEEEEccccc---cccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCC
Confidence            345555555666666677755433221   1334578999999999999999999999999987766666666543 345


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          338 ITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       338 I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                      ...|.|.-+...++.-  ...|.+.... +            ..+.|.-++...+..-.|  +|+|....
T Consensus       262 p~~~~WCG~dav~l~~--~~~l~lvg~~-~------------~~~~~~~~~~~~l~~E~D--G~riit~~  314 (410)
T PF04841_consen  262 PKQMAWCGNDAVVLSW--EDELLLVGPD-G------------DSISFWYDGPVILVSEID--GVRIITST  314 (410)
T ss_pred             CcEEEEECCCcEEEEe--CCEEEEECCC-C------------CceEEeccCceEEeccCC--ceEEEeCC
Confidence            6777776554333222  2334444411 1            112333344444444445  58888654

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.10  E-value=0.0089  Score=62.61  Aligned_cols=136  Identities=15%  Similarity=0.169  Sum_probs=80.5

Q ss_pred             EEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEE
Q 005656          209 TISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS  288 (685)
Q Consensus       209 ~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~  288 (685)
                      .++.+....+....++.+.+.+-.....   .         ...+++..+++||++++++.-..+|.+.+.+..-.+...
T Consensus       185 ~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i---------~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~  252 (410)
T PF04841_consen  185 LLSSDRVVEILLANGETIYIIDENSFKQ---I---------DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLC  252 (410)
T ss_pred             EeecCcceEEEEecCCEEEEEEcccccc---c---------cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeE
Confidence            4455556666666667777555433211   1         334689999999999999999999999999877666666


Q ss_pred             EeecC--CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005656          289 RWEVG--CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL  366 (685)
Q Consensus       289 ~~~~~--~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~  366 (685)
                      .+...  .....+.|+-+...++.-  ...+.++.           .....   +.|..++..++..-.|| |||..-..
T Consensus       253 e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg-----------~~~~~---~~~~~~~~~~l~~E~DG-~riit~~~  315 (410)
T PF04841_consen  253 EFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVG-----------PDGDS---ISFWYDGPVILVSEIDG-VRIITSTS  315 (410)
T ss_pred             EeecCcCCCCcEEEEECCCcEEEEe--CCEEEEEC-----------CCCCc---eEEeccCceEEeccCCc-eEEEeCCc
Confidence            66655  566677776443222211  12232222           12222   24444555555555676 77776554


Q ss_pred             CceeeEE
Q 005656          367 ARQIDAI  373 (685)
Q Consensus       367 ~~~i~~~  373 (685)
                      -+.++.+
T Consensus       316 ~~~l~~V  322 (410)
T PF04841_consen  316 HEFLQRV  322 (410)
T ss_pred             eEEEEEC
Confidence            4444443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.10  E-value=0.00079  Score=68.57  Aligned_cols=184  Identities=15%  Similarity=0.142  Sum_probs=112.1

Q ss_pred             CCEEEEEec---------C-CcEEEEECCCC-ccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005656          214 GNFAVLGTA---------G-GWIERFNLQSG-ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  282 (685)
Q Consensus       214 g~~l~~g~~---------d-g~i~~~d~~~~-~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~  282 (685)
                      ..++++|+.         . |.|.+|++... .....+..   .......++|++++-- .+ +++.+. ++.|.+|++.
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~---i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~  115 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL---IHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLD  115 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE---EEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEE
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE---EEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEcc
Confidence            578888865         2 89999999984 11111100   0111457889999876 33 344443 5899999998


Q ss_pred             CCc-eEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCC-CeeEEEEe--cCCCCeEEEEEcCCCCEEEEEeCCCc
Q 005656          283 GRD-LKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA-LRMVRKFE--GHTDRITDFCFSEDGKWLLSSGMDGS  358 (685)
Q Consensus       283 ~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~-~~~~~~~~--~h~~~I~~l~~spdg~~l~s~s~Dg~  358 (685)
                      ..+ +...-..+.++........++++++|.....+.++..+. ...+..+.  .....++++.|-+|++.++.+..+|.
T Consensus       116 ~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gn  195 (321)
T PF03178_consen  116 NSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGN  195 (321)
T ss_dssp             TTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSE
T ss_pred             CcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCe
Confidence            877 655544444444455555578999999888888875443 33233332  23455889999877789999999999


Q ss_pred             EEEEEcCC-------Cc----eeeEEeeccceEEE---EEcCC--CC------eEEEEEeCCCeEEEE
Q 005656          359 LRIWDVIL-------AR----QIDAIHVDVSITAL---SLSPN--MD------VLATAHVDQNGVYLW  404 (685)
Q Consensus       359 I~iwd~~~-------~~----~i~~~~~~~~v~~v---~~spd--g~------~Lat~~~d~~~I~lW  404 (685)
                      +.++..+.       +.    .+..+..+..|+++   ++.|.  +.      .++.++.+| +|...
T Consensus       196 l~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G-~Ig~l  262 (321)
T PF03178_consen  196 LFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDG-SIGVL  262 (321)
T ss_dssp             EEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS--EEEE
T ss_pred             EEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCC-EEEEE
Confidence            99998863       22    23445556668888   66662  22      377777787 67643

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=98.09  E-value=0.0063  Score=61.51  Aligned_cols=123  Identities=19%  Similarity=0.219  Sum_probs=64.6

Q ss_pred             CCeEEEEECCCCceEEEeecC---CceeEEEEeec--CCEEEEE-eCCCeEEEEEc-CCC----eeEEEEecC-------
Q 005656          273 HGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRV--NGLLATV-ADDLVIRLFDV-VAL----RMVRKFEGH-------  334 (685)
Q Consensus       273 dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~~~~--~~~l~~~-~~dg~I~i~d~-~~~----~~~~~~~~h-------  334 (685)
                      ..++.+||+.+.+.++++..+   .....+.|..+  ..+-++| .-..+|..|-- ..+    +.+..+..-       
T Consensus       221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l  300 (461)
T PF05694_consen  221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL  300 (461)
T ss_dssp             --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred             cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence            468999999999999999886   34556666544  3332222 23344544433 433    222222211       


Q ss_pred             ----------CCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCC---ceeeEEeec-----------------cceEEEE
Q 005656          335 ----------TDRITDFCFSEDGKWLLSSG-MDGSLRIWDVILA---RQIDAIHVD-----------------VSITALS  383 (685)
Q Consensus       335 ----------~~~I~~l~~spdg~~l~s~s-~Dg~I~iwd~~~~---~~i~~~~~~-----------------~~v~~v~  383 (685)
                                ..-|++|..|.|.++|..+. .+|.|+-||+..-   +++..+...                 ....-+.
T Consensus       301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvq  380 (461)
T PF05694_consen  301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQ  380 (461)
T ss_dssp             -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EE
T ss_pred             cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEE
Confidence                      23489999999999998766 7899999999763   334333322                 2246677


Q ss_pred             EcCCCCeEEEEE
Q 005656          384 LSPNMDVLATAH  395 (685)
Q Consensus       384 ~spdg~~Lat~~  395 (685)
                      .|.||+.|.+++
T Consensus       381 lS~DGkRlYvTn  392 (461)
T PF05694_consen  381 LSLDGKRLYVTN  392 (461)
T ss_dssp             E-TTSSEEEEE-
T ss_pred             EccCCeEEEEEe
Confidence            888888888774

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.09  E-value=0.0068  Score=63.04  Aligned_cols=196  Identities=14%  Similarity=0.143  Sum_probs=142.4

Q ss_pred             CCeEEEEEccCCCEEEEEe-cCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC---CCeEEE
Q 005656          203 TAVKACTISACGNFAVLGT-AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY---HGDIKV  278 (685)
Q Consensus       203 ~~v~~~~~s~~g~~l~~g~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~---dg~i~i  278 (685)
                      .....+++++.++.+++.. .++.|.++|..+.........       +.  ....++++++++.+..+..   ++++.+
T Consensus        74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v-------G~--~P~~~~~~~~~~~vYV~n~~~~~~~vsv  144 (381)
T COG3391          74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV-------GL--GPVGLAVDPDGKYVYVANAGNGNNTVSV  144 (381)
T ss_pred             ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee-------cc--CCceEEECCCCCEEEEEecccCCceEEE
Confidence            3445778888888665554 458899999777766655421       22  5678999999987776654   689999


Q ss_pred             EECCCCceEEEeecCCceeEEEEeecCCEEEEEe-CCCeEEEEEcCCCeeEE-E---EecCCCCeEEEEEcCCCCEEEEE
Q 005656          279 WDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVA-DDLVIRLFDVVALRMVR-K---FEGHTDRITDFCFSEDGKWLLSS  353 (685)
Q Consensus       279 wd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~I~i~d~~~~~~~~-~---~~~h~~~I~~l~~spdg~~l~s~  353 (685)
                      .|-.+.+.......+.....+++.|+|+.++++. .++.|.++|..+....+ .   ...-......+.++|+|.++...
T Consensus       145 id~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~  224 (381)
T COG3391         145 IDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVA  224 (381)
T ss_pred             EeCCCCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEE
Confidence            9999998888866554348999999999666555 78899999987766554 1   01122334678999999976655


Q ss_pred             eCC---CcEEEEEcCCCceeeE-Eeecc-ceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          354 GMD---GSLRIWDVILARQIDA-IHVDV-SITALSLSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       354 s~D---g~I~iwd~~~~~~i~~-~~~~~-~v~~v~~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                      ...   +.+...|..++..... ..... ....+..+|+|+++.+.....+.+.+-+..
T Consensus       225 ~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~  283 (381)
T COG3391         225 NDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGA  283 (381)
T ss_pred             eccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCC
Confidence            433   5899999988877765 33333 467789999999999998776678877643

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.07  E-value=1.9e-06  Score=88.32  Aligned_cols=205  Identities=17%  Similarity=0.193  Sum_probs=131.9

Q ss_pred             cEEEEEEccCCC-CEEEEEeCCCcEEEEeCCCCeee-EEeecccccCeeEEEEeC-CCcEEEEec----CCCcEEEEEec
Q 005656            4 AVTALAFSSDGQ-PLLASGASSGVISIWNLEKRRLQ-SVIREAHDNAIISLHFFA-NEPVLMSAS----ADNSIKMWIFD   76 (685)
Q Consensus         4 ~V~~l~fspdg~-~~latg~~dg~I~vwd~~~~~~~-~~~~~~h~~~V~~l~~sp-~~~~l~s~s----~D~~v~iWd~~   76 (685)
                      .+.|+++.-+.+ .++++|..+|.|.+-.+....-- ..+..+|....++++|++ |...||.|-    .|..+.|||+.
T Consensus        58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~  137 (783)
T KOG1008|consen   58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN  137 (783)
T ss_pred             CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence            356777655433 58999999999999987664433 334448889999999998 456777763    36789999998


Q ss_pred             CCCCCCceeEecc-cCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCcee
Q 005656           77 TTDGDPRLLRFRS-GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI  155 (685)
Q Consensus        77 ~~~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (685)
                      +.-..+..-..+. +-.....+++|..+.+.+++|...+.+.++|++........                         
T Consensus       138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~s-------------------------  192 (783)
T KOG1008|consen  138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSS-------------------------  192 (783)
T ss_pred             cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhh-------------------------
Confidence            7622222111111 23445568889888889999998889999998633211000                         


Q ss_pred             eeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEcc-CCCEEEEEecCCcEEEEECC-C
Q 005656          156 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQ-S  233 (685)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~~~d~~-~  233 (685)
                                                                  .....+..+.+.| .+++++.-. +|.|.+||.. .
T Consensus       193 --------------------------------------------vnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rn  227 (783)
T KOG1008|consen  193 --------------------------------------------VNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRN  227 (783)
T ss_pred             --------------------------------------------hhhhhcccceecCCCCCceeccc-cCceeeccchhh
Confidence                                                        1123456677788 667766655 9999999942 2


Q ss_pred             C-ccccccccccccccCCCCcCEEEEEEcCCCC-EEEEEE-CCCeEEEEECC
Q 005656          234 G-ISRGSYLDMSERSNYAHNGEVVGVACDSTNT-LMISAG-YHGDIKVWDFK  282 (685)
Q Consensus       234 ~-~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s-~dg~i~iwd~~  282 (685)
                      - .....+..    ........+..++|.|... .+++.. ..++|+.+|+.
T Consensus       228 ienpl~~i~~----~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  228 IENPLQIILR----NENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             hccHHHHHhh----CCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            1 11111110    1111223589999999643 455555 45789999986

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.04  E-value=0.0056  Score=64.90  Aligned_cols=114  Identities=15%  Similarity=0.232  Sum_probs=65.8

Q ss_pred             EEEEEEccCCCCEEE-EEeCCC----cEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCC-----------
Q 005656            5 VTALAFSSDGQPLLA-SGASSG----VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADN-----------   68 (685)
Q Consensus         5 V~~l~fspdg~~~la-tg~~dg----~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~-----------   68 (685)
                      +...++||||+ ++| +-+..|    .|+++|+++++.+....  ....-.++.|.++++.|+....+.           
T Consensus       126 ~~~~~~Spdg~-~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i--~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~  202 (414)
T PF02897_consen  126 LGGFSVSPDGK-RLAYSLSDGGSEWYTLRVFDLETGKFLPDGI--ENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR  202 (414)
T ss_dssp             EEEEEETTTSS-EEEEEEEETTSSEEEEEEEETTTTEEEEEEE--EEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred             eeeeeECCCCC-EEEEEecCCCCceEEEEEEECCCCcCcCCcc--cccccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence            34678999999 555 434445    49999999998765432  111223499999988766554332           


Q ss_pred             cEEEEEecCCCCCCceeEecccCCCC--CeEEEEecCCCEEEEEeCCC----ceEEEEeec
Q 005656           69 SIKMWIFDTTDGDPRLLRFRSGHSAP--PLCIRFYANGRHILSAGQDR----AFRLFSVIQ  123 (685)
Q Consensus        69 ~v~iWd~~~~~~~~~~~~~~~~h~~~--v~~i~~~~~~~~l~s~s~dg----~i~vwd~~~  123 (685)
                      .|..|.+.+......++  +......  ...+..++|+++++..+..+    .+.+.++..
T Consensus       203 ~v~~~~~gt~~~~d~lv--fe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~  261 (414)
T PF02897_consen  203 QVYRHKLGTPQSEDELV--FEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD  261 (414)
T ss_dssp             EEEEEETTS-GGG-EEE--EC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred             EEEEEECCCChHhCeeE--EeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence            25666554432221233  2233333  45778899999887654333    345555443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.03  E-value=0.0056  Score=58.61  Aligned_cols=159  Identities=13%  Similarity=0.126  Sum_probs=87.1

Q ss_pred             CCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccc---cccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEE
Q 005656          202 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR---GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV  278 (685)
Q Consensus       202 ~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~---~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~i  278 (685)
                      ....-.+++..++.++++--.++.+.++++......   ..+..........++..+-+++|++.++.|+.+-...-..+
T Consensus        64 ~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l  143 (248)
T PF06977_consen   64 FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRL  143 (248)
T ss_dssp             -SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEE
T ss_pred             CCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhh
Confidence            345778888888888887767899999988443221   11111111111246677999999999888877776666666


Q ss_pred             EECCC---CceEEEee---------cCCceeEEEEeecCC-EEEEEeCCCeEEEEEcCCCeeEEEEecCC---------C
Q 005656          279 WDFKG---RDLKSRWE---------VGCSLVKIVYHRVNG-LLATVADDLVIRLFDVVALRMVRKFEGHT---------D  336 (685)
Q Consensus       279 wd~~~---~~~~~~~~---------~~~~i~~~~~~~~~~-~l~~~~~dg~I~i~d~~~~~~~~~~~~h~---------~  336 (685)
                      |.+..   ........         .-..+..+.++|... +++....+..|.++| .+|+++..+.-..         .
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~  222 (248)
T PF06977_consen  144 YEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIP  222 (248)
T ss_dssp             EEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---
T ss_pred             EEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccC
Confidence            66543   11111110         114578899999765 666666778899999 6677766554222         2


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005656          337 RITDFCFSEDGKWLLSSGMDGSLRIW  362 (685)
Q Consensus       337 ~I~~l~~spdg~~l~s~s~Dg~I~iw  362 (685)
                      ..-.|+|.++|++.+ .+.-+..++|
T Consensus       223 QpEGIa~d~~G~LYI-vsEpNlfy~f  247 (248)
T PF06977_consen  223 QPEGIAFDPDGNLYI-VSEPNLFYRF  247 (248)
T ss_dssp             SEEEEEE-TT--EEE-EETTTEEEEE
T ss_pred             CccEEEECCCCCEEE-EcCCceEEEe
Confidence            477899999996544 4456655554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.93  E-value=0.008  Score=59.70  Aligned_cols=242  Identities=9%  Similarity=0.024  Sum_probs=132.6

Q ss_pred             CCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhH
Q 005656           56 ANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV  135 (685)
Q Consensus        56 p~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~  135 (685)
                      ..++.|+.|+.+| +.+++.....   .....  .+..+|..+...++-+.+++-+ |+.+.++++..-...........
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~---~~~~i--~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~   77 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPS---KPTRI--LKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAF   77 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCc---cceeE--eecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccc
Confidence            3577889998888 8888873222   11121  1233499999999876666655 59999999865443221100000


Q ss_pred             HHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEE--EccC
Q 005656          136 AKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACT--ISAC  213 (685)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~--~s~~  213 (685)
                      .+. .                                                     ...........+..++  -...
T Consensus        78 ~~~-~-----------------------------------------------------~~~~~~~~~~~v~~f~~~~~~~  103 (275)
T PF00780_consen   78 PKS-R-----------------------------------------------------SLPTKLPETKGVSFFAVNGGHE  103 (275)
T ss_pred             ccc-c-----------------------------------------------------cccccccccCCeeEEeeccccc
Confidence            000 0                                                     0000001122333333  2233


Q ss_pred             CCEEEEEecCCcEEEEECCCCc-----cccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEE
Q 005656          214 GNFAVLGTAGGWIERFNLQSGI-----SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS  288 (685)
Q Consensus       214 g~~l~~g~~dg~i~~~d~~~~~-----~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~  288 (685)
                      +...++......|.+|......     ....+         .-...+.+++|.  ++.++.|.. +...+.|+.++....
T Consensus       104 ~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~---------~lp~~~~~i~~~--~~~i~v~~~-~~f~~idl~~~~~~~  171 (275)
T PF00780_consen  104 GSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI---------SLPDPPSSIAFL--GNKICVGTS-KGFYLIDLNTGSPSE  171 (275)
T ss_pred             cceEEEEEECCEEEEEEEECCcccccceeEEE---------EcCCCcEEEEEe--CCEEEEEeC-CceEEEecCCCCceE
Confidence            4444444445588888776632     22222         344778899998  456766664 558889999776655


Q ss_pred             EeecCC------------ceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEE--EEecCCCCeEEEEEcCCCCEEEEEe
Q 005656          289 RWEVGC------------SLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR--KFEGHTDRITDFCFSEDGKWLLSSG  354 (685)
Q Consensus       289 ~~~~~~------------~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~--~~~~h~~~I~~l~~spdg~~l~s~s  354 (685)
                      ......            ....+.--+++.+|++-  |..-.+.|. .|+..+  .+.- ...+..+++  ...||+..+
T Consensus       172 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W-~~~p~~~~~--~~pyli~~~  245 (275)
T PF00780_consen  172 LLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGVFVNK-NGEPSRKSTIQW-SSAPQSVAY--SSPYLIAFS  245 (275)
T ss_pred             EeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEEEEcC-CCCcCcccEEEc-CCchhEEEE--ECCEEEEEC
Confidence            443221            11222222344555543  233333343 444433  2322 234566666  345888777


Q ss_pred             CCCcEEEEEcCCCceeeEEeecc
Q 005656          355 MDGSLRIWDVILARQIDAIHVDV  377 (685)
Q Consensus       355 ~Dg~I~iwd~~~~~~i~~~~~~~  377 (685)
                      .+ .|.||++.++++++.+..+.
T Consensus       246 ~~-~iEV~~~~~~~lvQ~i~~~~  267 (275)
T PF00780_consen  246 SN-SIEVRSLETGELVQTIPLPN  267 (275)
T ss_pred             CC-EEEEEECcCCcEEEEEECCC
Confidence            65 59999999999999887553

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.92  E-value=0.0065  Score=60.37  Aligned_cols=236  Identities=16%  Similarity=0.128  Sum_probs=129.5

Q ss_pred             EEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEe-
Q 005656            9 AFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRF-   87 (685)
Q Consensus         9 ~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~-   87 (685)
                      .|.++...++.+--..+.|.-|+..+++.....   +.+.+.++.....+..|+++..  .+.+++++.+... ..+.. 
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~---~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~-t~~~~~  104 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVFP---SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKI-TLLAEP  104 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceEEEE---CCCCcccceeecCCCeEEEEcc--ccEEEeccCCcee-EEeccc
Confidence            456666646666667788888888766543332   3445566666666666666543  4667776443210 11111 


Q ss_pred             cccC-CCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccC
Q 005656           88 RSGH-SAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERD  166 (685)
Q Consensus        88 ~~~h-~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (685)
                      ..+. ....+.+...|+|.+.++... .    ++  .+....                                      
T Consensus       105 ~~~~~~~r~ND~~v~pdG~~wfgt~~-~----~~--~~~~~~--------------------------------------  139 (307)
T COG3386         105 EDGLPLNRPNDGVVDPDGRIWFGDMG-Y----FD--LGKSEE--------------------------------------  139 (307)
T ss_pred             cCCCCcCCCCceeEcCCCCEEEeCCC-c----cc--cCcccc--------------------------------------
Confidence            1111 245567777888765554332 1    11  000000                                      


Q ss_pred             CcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecC-CcEEEEECCC--Cccccccccc
Q 005656          167 WCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG-GWIERFNLQS--GISRGSYLDM  243 (685)
Q Consensus       167 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d-g~i~~~d~~~--~~~~~~~~~~  243 (685)
                              ...+  .+|.+...   ....+....+-.....++|||+++.+++.... +.|+.|++..  +.....-   
T Consensus       140 --------~~~G--~lyr~~p~---g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~---  203 (307)
T COG3386         140 --------RPTG--SLYRVDPD---GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRR---  203 (307)
T ss_pred             --------CCcc--eEEEEcCC---CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcc---
Confidence                    0001  12222210   00000111223445789999999888777654 8899998863  2211110   


Q ss_pred             cccccCCCCcCEEEEEEcCCCCEEEEEECCC-eEEEEECCCCceEEEeecC-CceeEEEEee-cCCEEEEEe
Q 005656          244 SERSNYAHNGEVVGVACDSTNTLMISAGYHG-DIKVWDFKGRDLKSRWEVG-CSLVKIVYHR-VNGLLATVA  312 (685)
Q Consensus       244 ~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~-~~~~l~~~~  312 (685)
                      .......+.+..-+++.+.+|.+.+++..+| .|.+|+.. ++++..+..+ ..+++++|-- +.+.|++.+
T Consensus       204 ~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         204 GFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS  274 (307)
T ss_pred             eEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence            0001113456677888999998776555554 89999988 8888888887 7788888853 344444433

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.91  E-value=3.2e-06  Score=86.78  Aligned_cols=198  Identities=16%  Similarity=0.195  Sum_probs=134.4

Q ss_pred             CCCeEEEEEccC--CCEEEEEecCCcEEEEECCCCccc-cccccccccccCCCCcCEEEEEEcCCC-CEEEEEE----CC
Q 005656          202 PTAVKACTISAC--GNFAVLGTAGGWIERFNLQSGISR-GSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAG----YH  273 (685)
Q Consensus       202 ~~~v~~~~~s~~--g~~l~~g~~dg~i~~~d~~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s----~d  273 (685)
                      ...+.|+++.-+  ...+++|..+|.|.+-..+..... ..+       ..+|....++++|++-. ..||.|-    .|
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~-------tp~~ar~Ct~lAwneLDtn~LAagldkhrnd  128 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEV-------TPGYARPCTSLAWNELDTNHLAAGLDKHRND  128 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCccccccee-------cccccccccccccccccHHHHHhhhhhhccc
Confidence            455677776554  357899999999999887754433 222       23788899999999864 4455542    35


Q ss_pred             CeEEEEECCCC--ceEEEee----cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCC-eeEEEEecCCCCeEEEEEcC-
Q 005656          274 GDIKVWDFKGR--DLKSRWE----VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-RMVRKFEGHTDRITDFCFSE-  345 (685)
Q Consensus       274 g~i~iwd~~~~--~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~I~~l~~sp-  345 (685)
                      ..+.|||+.++  .+.....    ......+++|..+.+++.+|.....+.++|++.. .....+  .+..+..+..+| 
T Consensus       129 s~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~  206 (783)
T KOG1008|consen  129 SSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPF  206 (783)
T ss_pred             CCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCC
Confidence            67999999876  2222221    2245568888888889999999999999998732 111112  233466677888 


Q ss_pred             CCCEEEEEeCCCcEEEEEcC-C-CceeeEEeec-----cceEEEEEcCCC-CeEEEEEeCCCeEEEEEcCCC
Q 005656          346 DGKWLLSSGMDGSLRIWDVI-L-ARQIDAIHVD-----VSITALSLSPNM-DVLATAHVDQNGVYLWVNRCM  409 (685)
Q Consensus       346 dg~~l~s~s~Dg~I~iwd~~-~-~~~i~~~~~~-----~~v~~v~~spdg-~~Lat~~~d~~~I~lW~~~~~  409 (685)
                      .+.|+++-. ||.|.+||.. . ..++..+...     ..+..++|+|.. ..|++...|.+.|++++.+..
T Consensus       207 ~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v  277 (783)
T KOG1008|consen  207 SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVV  277 (783)
T ss_pred             CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccccc
Confidence            778888776 9999999942 1 2233333222     238999999964 467888888889999976543

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.89  E-value=0.015  Score=62.99  Aligned_cols=106  Identities=11%  Similarity=0.156  Sum_probs=67.1

Q ss_pred             CCcEEEEECCCCccccccccccccc----------------------cCCC-CcCE-EEEEEcCCCCEEEEEEC-----C
Q 005656          223 GGWIERFNLQSGISRGSYLDMSERS----------------------NYAH-NGEV-VGVACDSTNTLMISAGY-----H  273 (685)
Q Consensus       223 dg~i~~~d~~~~~~~~~~~~~~~~~----------------------~~~h-~~~v-~~l~~~~~~~~l~s~s~-----d  273 (685)
                      +|.|..+|..+|+.+-.+.......                      ...+ .+.+ ..+++++...+++.+..     +
T Consensus       180 ~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~  259 (527)
T TIGR03075       180 RGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWN  259 (527)
T ss_pred             CcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCC
Confidence            6789999999988876654322110                      0001 1112 23477776666665542     1


Q ss_pred             C-----------eEEEEECCCCceEEEeecC----------CceeEEEEeecCC---EEEEEeCCCeEEEEEcCCCeeE
Q 005656          274 G-----------DIKVWDFKGRDLKSRWEVG----------CSLVKIVYHRVNG---LLATVADDLVIRLFDVVALRMV  328 (685)
Q Consensus       274 g-----------~i~iwd~~~~~~~~~~~~~----------~~i~~~~~~~~~~---~l~~~~~dg~I~i~d~~~~~~~  328 (685)
                      +           .|.-.|+++|+....++..          ....-+.+..+|+   .++.+..+|.++++|..+|+.+
T Consensus       260 ~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       260 SHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             CCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            2           5777888999988766531          2222233334666   8889999999999999999886

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.85  E-value=0.0028  Score=64.55  Aligned_cols=217  Identities=11%  Similarity=0.106  Sum_probs=126.2

Q ss_pred             CcEEEEeCCCCeeeEEeecccccCeeEEEEe---CC----CcEEEEecC----------CCcEEEEEecCC-C--CCCce
Q 005656           25 GVISIWNLEKRRLQSVIREAHDNAIISLHFF---AN----EPVLMSASA----------DNSIKMWIFDTT-D--GDPRL   84 (685)
Q Consensus        25 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~s---p~----~~~l~s~s~----------D~~v~iWd~~~~-~--~~~~~   84 (685)
                      +.|++.|..+.+.+..+.-.....+.+++..   .+    ..+++.|+.          .|.|.++++... .  ...+.
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            3588889888877766653344455555433   22    457777643          288999998874 1  11122


Q ss_pred             eEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCc-eeeEechhhHHHHHhhccccccccccCceeeeeccccc
Q 005656           85 LRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ-QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIR  163 (685)
Q Consensus        85 ~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (685)
                      +.. ....++|++++-. ++ +|+.+. .+.|.+|++...+ .......                               
T Consensus        82 i~~-~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~-------------------------------  126 (321)
T PF03178_consen   82 IHS-TEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFY-------------------------------  126 (321)
T ss_dssp             EEE-EEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-------------------------------
T ss_pred             EEE-EeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhhee-------------------------------
Confidence            222 3457889999877 44 444443 5789999998776 2211100                               


Q ss_pred             ccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcc-cccccc
Q 005656          164 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS-RGSYLD  242 (685)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~-~~~~~~  242 (685)
                                                          .....+.++  ...++++++|.....+.++..+.... ...+. 
T Consensus       127 ------------------------------------~~~~~i~sl--~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va-  167 (321)
T PF03178_consen  127 ------------------------------------DSPFYITSL--SVFKNYILVGDAMKSVSLLRYDEENNKLILVA-  167 (321)
T ss_dssp             -------------------------------------BSSSEEEE--EEETTEEEEEESSSSEEEEEEETTTE-EEEEE-
T ss_pred             ------------------------------------cceEEEEEE--eccccEEEEEEcccCEEEEEEEccCCEEEEEE-
Confidence                                                112234444  44477999999988888885544211 11111 


Q ss_pred             ccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCC-------C--c--eEEEeecCCceeEE---EEee--cC-
Q 005656          243 MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG-------R--D--LKSRWEVGCSLVKI---VYHR--VN-  305 (685)
Q Consensus       243 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~-------~--~--~~~~~~~~~~i~~~---~~~~--~~-  305 (685)
                           .......++++.+-++++.++.+..+|.+.++....       +  +  ....+..+..++++   .+.|  .+ 
T Consensus       168 -----~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~  242 (321)
T PF03178_consen  168 -----RDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSS  242 (321)
T ss_dssp             -----EESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS
T ss_pred             -----ecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCC
Confidence                 113355688888886667899999999999998762       2  2  23445556778777   4444  12 


Q ss_pred             -----CEEEEEeCCCeEEEE
Q 005656          306 -----GLLATVADDLVIRLF  320 (685)
Q Consensus       306 -----~~l~~~~~dg~I~i~  320 (685)
                           ..++.++.+|.|.+.
T Consensus       243 ~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  243 ESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             -TTEEEEEEEEETTS-EEEE
T ss_pred             cccccceEEEEecCCEEEEE
Confidence                 247788888888743

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.76  E-value=0.0096  Score=59.17  Aligned_cols=144  Identities=10%  Similarity=0.082  Sum_probs=95.7

Q ss_pred             cCEEEEEEcCCCCEEEEEEC-----------CCeEEEEECCCCceEEEeec-CCceeEEEEeecCCEEEEEeC-CCeEEE
Q 005656          253 GEVVGVACDSTNTLMISAGY-----------HGDIKVWDFKGRDLKSRWEV-GCSLVKIVYHRVNGLLATVAD-DLVIRL  319 (685)
Q Consensus       253 ~~v~~l~~~~~~~~l~s~s~-----------dg~i~iwd~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~-dg~I~i  319 (685)
                      ...+.+.++|+|.+.++...           -|.|+.+|. .+.....+.. -...+.++||||++.++.+.. .+.|+-
T Consensus       111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r  189 (307)
T COG3386         111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHR  189 (307)
T ss_pred             CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEE
Confidence            45567888899886665443           133444443 4555554444 356678999999987777765 478888


Q ss_pred             EEcCC--C----e-eEEEEecCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEEcCCCceeeEEeec-cceEEEEEc-CCCC
Q 005656          320 FDVVA--L----R-MVRKFEGHTDRITDFCFSEDGKWLLSSGMDG-SLRIWDVILARQIDAIHVD-VSITALSLS-PNMD  389 (685)
Q Consensus       320 ~d~~~--~----~-~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg-~I~iwd~~~~~~i~~~~~~-~~v~~v~~s-pdg~  389 (685)
                      |++..  +    + ....+..+.+..-.++...+|.+.+++-.+| .|.+|+.. |+++..+..+ ..+++++|- |+.+
T Consensus       190 ~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~  268 (307)
T COG3386         190 YDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLN  268 (307)
T ss_pred             EecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcC
Confidence            87762  1    1 1122223456666788888888776555554 89999977 9999999988 559999984 4566


Q ss_pred             eEEEEEeCC
Q 005656          390 VLATAHVDQ  398 (685)
Q Consensus       390 ~Lat~~~d~  398 (685)
                      .|++++...
T Consensus       269 ~L~iTs~~~  277 (307)
T COG3386         269 TLYITSARS  277 (307)
T ss_pred             EEEEEecCC
Confidence            666665543

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.69  E-value=0.00016  Score=74.76  Aligned_cols=94  Identities=18%  Similarity=0.275  Sum_probs=82.5

Q ss_pred             cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeE-EEEEcCCCCEEEEEeCCCcEEEEEcCCCcee
Q 005656          292 VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRIT-DFCFSEDGKWLLSSGMDGSLRIWDVILARQI  370 (685)
Q Consensus       292 ~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~-~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i  370 (685)
                      .+..+..+.|+|.-.++|.+..+|.|.++.+. .+.+.++.-|...++ +++|.|||+.||.|-.||+|++-|+.++..+
T Consensus        19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence            34678889999999999999999999999888 777888887888887 9999999999999999999999999999988


Q ss_pred             eE--EeeccceEEEEEcC
Q 005656          371 DA--IHVDVSITALSLSP  386 (685)
Q Consensus       371 ~~--~~~~~~v~~v~~sp  386 (685)
                      ..  +....+|.++-|++
T Consensus        98 ~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   98 VSFLFSVETDISKGIWDR  115 (665)
T ss_pred             eccccccccchheeeccc
Confidence            87  55566788888873

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.66  E-value=0.0048  Score=68.22  Aligned_cols=132  Identities=14%  Similarity=0.167  Sum_probs=95.8

Q ss_pred             CCCeEEEEECCCCceEEEeecCCceeEEEEeec-------CCEEEEEeCCCeEEEEEcCCC--eeEEE-E--ecCCCCeE
Q 005656          272 YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRV-------NGLLATVADDLVIRLFDVVAL--RMVRK-F--EGHTDRIT  339 (685)
Q Consensus       272 ~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~-------~~~l~~~~~dg~I~i~d~~~~--~~~~~-~--~~h~~~I~  339 (685)
                      ....|+-.|+..|+.+..+..+..+.-..+.|+       ....++|-.++.+..||.+-.  +++.. .  .......+
T Consensus       502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs  581 (794)
T PF08553_consen  502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS  581 (794)
T ss_pred             CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence            457899999999999999998755544555554       235567888899999998753  33321 1  12345678


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEe-eccceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656          340 DFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH-VDVSITALSLSPNMDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       340 ~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~-~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~  406 (685)
                      |++-+.+| +||.|+.+|.||+||--..+....+. ...+|..|..+.||+++++++..  .+-|.+.
T Consensus       582 ~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t--yLlLi~t  646 (794)
T PF08553_consen  582 CFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT--YLLLIDT  646 (794)
T ss_pred             EEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc--eEEEEEE
Confidence            88888777 79999999999999953333233333 36779999999999999999855  5666653

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.59  E-value=0.0051  Score=49.74  Aligned_cols=101  Identities=20%  Similarity=0.279  Sum_probs=70.9

Q ss_pred             EEEEEEc---cCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCC
Q 005656            5 VTALAFS---SDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD   81 (685)
Q Consensus         5 V~~l~fs---pdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~   81 (685)
                      |++|++.   -||..-|++|+.|..|++|+-+  +.+..+.  -.+.|+++.-... ..++.+..+|+|-+|+-..    
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~--e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~----   72 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT--ETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ----   72 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe--cccceEEEEEcCC-CEEEEEecCCEEEEEeCcc----
Confidence            5666654   4666789999999999999743  5666664  4567888887776 5788899999999995422    


Q ss_pred             CceeEecccCCCCCeEEEEecCC----CEEEEEeCCCceE
Q 005656           82 PRLLRFRSGHSAPPLCIRFYANG----RHILSAGQDRAFR  117 (685)
Q Consensus        82 ~~~~~~~~~h~~~v~~i~~~~~~----~~l~s~s~dg~i~  117 (685)
                       +..+.-.  ...++++.++.-.    ..|++|-.+|.|-
T Consensus        73 -RlWRiKS--K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   73 -RLWRIKS--KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             -eeeeecc--CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence             3333322  3337777776532    3688888888764

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.56  E-value=0.024  Score=53.50  Aligned_cols=260  Identities=13%  Similarity=0.100  Sum_probs=137.3

Q ss_pred             EEEEccCCCCEEEEEeCCCc-EEEEeCCCCeeeEEeecccccC--eeEEEEeCCCcEEEEecCC-----CcEEEEEecCC
Q 005656            7 ALAFSSDGQPLLASGASSGV-ISIWNLEKRRLQSVIREAHDNA--IISLHFFANEPVLMSASAD-----NSIKMWIFDTT   78 (685)
Q Consensus         7 ~l~fspdg~~~latg~~dg~-I~vwd~~~~~~~~~~~~~h~~~--V~~l~~sp~~~~l~s~s~D-----~~v~iWd~~~~   78 (685)
                      .|+|+|.-..-++.+-.-|+ ..++|..+.+...++. ..++.  --.=.|||||.+|...-.|     |.|-|||...+
T Consensus        72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~-s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~  150 (366)
T COG3490          72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLV-SQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG  150 (366)
T ss_pred             CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEe-cccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence            35566654434444443333 5677777766555543 11111  1123589999999876544     67899988743


Q ss_pred             CCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEE-EeecCceeeEechhhHHHHHhhccccccccccCceeee
Q 005656           79 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF-SVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF  157 (685)
Q Consensus        79 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (685)
                         ...+..+..|.-....+.|.+||+.++.+.  |-|..- |....+..                              
T Consensus       151 ---fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lN------------------------------  195 (366)
T COG3490         151 ---FQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELN------------------------------  195 (366)
T ss_pred             ---cceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccc------------------------------
Confidence               245566778888899999999999888764  334433 21110000                              


Q ss_pred             ecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCc----EEEEEC-C
Q 005656          158 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGW----IERFNL-Q  232 (685)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~----i~~~d~-~  232 (685)
                                     ...-...+.+.+.....+-++...+...+...++.++..++|...+-+-..|.    --+.-. .
T Consensus       196 ---------------ldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~  260 (366)
T COG3490         196 ---------------LDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFR  260 (366)
T ss_pred             ---------------hhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeecc
Confidence                           00011222333322222222222232244567888888888876554432221    001111 1


Q ss_pred             CCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEE
Q 005656          233 SGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV  311 (685)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  311 (685)
                      .++... +...+......-...|-+|+.+.+..+++..+ ..+...+||..++..+..-....   +.-.-+...-+++.
T Consensus       261 ~g~~l~-~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d---aaGva~~~~gf~vs  336 (366)
T COG3490         261 KGEPLE-FLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPD---AAGVAAAKGGFAVS  336 (366)
T ss_pred             CCCcCc-ccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccc---cccceeccCceEEe
Confidence            111111 11111111112334567788876666655555 55668899999998876543321   11222344556666


Q ss_pred             eCCCeEEEEE
Q 005656          312 ADDLVIRLFD  321 (685)
Q Consensus       312 ~~dg~I~i~d  321 (685)
                      +.+|.+..+.
T Consensus       337 sg~G~~~~~s  346 (366)
T COG3490         337 SGQGRIIFYS  346 (366)
T ss_pred             cCCceEEecc
Confidence            7778887773

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.55  E-value=0.16  Score=53.73  Aligned_cols=181  Identities=14%  Similarity=0.072  Sum_probs=95.6

Q ss_pred             EEEEccCCCEEEEEecCC-----------cEEEEECCCCccc--cccccccccccCCCCc-CEEEEEEcCCCCEEEEEEC
Q 005656          207 ACTISACGNFAVLGTAGG-----------WIERFNLQSGISR--GSYLDMSERSNYAHNG-EVVGVACDSTNTLMISAGY  272 (685)
Q Consensus       207 ~~~~s~~g~~l~~g~~dg-----------~i~~~d~~~~~~~--~~~~~~~~~~~~~h~~-~v~~l~~~~~~~~l~s~s~  272 (685)
                      .+.|.++++.++....+.           .|+.|.+.++...  ..+..       .... ....+..++++++++..+.
T Consensus       174 ~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~-------~~~~~~~~~~~~s~d~~~l~i~~~  246 (414)
T PF02897_consen  174 SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEE-------PDEPFWFVSVSRSKDGRYLFISSS  246 (414)
T ss_dssp             EEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC--------TTCTTSEEEEEE-TTSSEEEEEEE
T ss_pred             eEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEee-------cCCCcEEEEEEecCcccEEEEEEE
Confidence            388999988776654332           3778888776554  22210       1222 2678889999998765442


Q ss_pred             ---C-CeEEEEECCCC-----ceEEEeecCCceeEEEEeecCCEEEEEeC---CCeEEEEEcCCCee---EEEEecCCCC
Q 005656          273 ---H-GDIKVWDFKGR-----DLKSRWEVGCSLVKIVYHRVNGLLATVAD---DLVIRLFDVVALRM---VRKFEGHTDR  337 (685)
Q Consensus       273 ---d-g~i~iwd~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~I~i~d~~~~~~---~~~~~~h~~~  337 (685)
                         + ..+.+.++..+     ...........+....-+..+.+++....   ++.|...++.+...   ...+..|...
T Consensus       247 ~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~  326 (414)
T PF02897_consen  247 SGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDED  326 (414)
T ss_dssp             SSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSS
T ss_pred             ccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCc
Confidence               2 35788888764     33333333334444443444444444322   45777788877652   3355556664


Q ss_pred             eEEEEEcCCCCEEEEE-eCCC--cEEEEEcCCCceeeEEeeccc--eEEEEEcCCCCeEEEE
Q 005656          338 ITDFCFSEDGKWLLSS-GMDG--SLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATA  394 (685)
Q Consensus       338 I~~l~~spdg~~l~s~-s~Dg--~I~iwd~~~~~~i~~~~~~~~--v~~v~~spdg~~Lat~  394 (685)
                      +.-..+...+++|+.. -.++  .|+++++..+.....+.....  |..+...++++.+...
T Consensus       327 ~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~  388 (414)
T PF02897_consen  327 VSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFS  388 (414)
T ss_dssp             EEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEE
T ss_pred             eeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEE
Confidence            3333333455555544 3444  589999884444444443322  6666666665544433

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=97.52  E-value=0.14  Score=52.09  Aligned_cols=75  Identities=20%  Similarity=0.203  Sum_probs=47.3

Q ss_pred             eEEEeecCCceeEEEEee-------cCCEEEEEeCCCeEEEEEcCCCeeEE---EE-ecCCCCeEEEEEcCCCCEEEEEe
Q 005656          286 LKSRWEVGCSLVKIVYHR-------VNGLLATVADDLVIRLFDVVALRMVR---KF-EGHTDRITDFCFSEDGKWLLSSG  354 (685)
Q Consensus       286 ~~~~~~~~~~i~~~~~~~-------~~~~l~~~~~dg~I~i~d~~~~~~~~---~~-~~h~~~I~~l~~spdg~~l~s~s  354 (685)
                      +...+..+..+..+.|..       .|.++++....+.|....+..+..+.   .+ .....++.++++.|||.+.++.+
T Consensus       245 P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d  324 (331)
T PF07995_consen  245 PVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDD  324 (331)
T ss_dssp             -SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-
T ss_pred             cceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEEC
Confidence            334455556677777764       34566666667788888887553322   22 23445899999999999888888


Q ss_pred             CCCcEE
Q 005656          355 MDGSLR  360 (685)
Q Consensus       355 ~Dg~I~  360 (685)
                      .+|.|+
T Consensus       325 ~~G~iy  330 (331)
T PF07995_consen  325 SDGKIY  330 (331)
T ss_dssp             TTTTEE
T ss_pred             CCCeEe
Confidence            888774

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>smart00320 WD40 WD40 repeats

Probab=97.47  E-value=0.00039  Score=44.57  Aligned_cols=39  Identities=38%  Similarity=0.841  Sum_probs=34.9

Q ss_pred             CeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005656          325 LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD  363 (685)
Q Consensus       325 ~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd  363 (685)
                      ++++..+..|...|+++.|+++++++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            456677788999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.42  E-value=0.003  Score=69.65  Aligned_cols=102  Identities=15%  Similarity=0.330  Sum_probs=75.4

Q ss_pred             EEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCe
Q 005656           17 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPL   96 (685)
Q Consensus        17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~   96 (685)
                      .+|.|++.|.+...|+...-....-...-.++|++++|+.+|.+++.|-.+|.|.+||+..+    ++++.+..|..|.+
T Consensus       101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~----k~l~~i~e~~ap~t  176 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA----KILKVITEHGAPVT  176 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC----cceeeeeecCCccc
Confidence            68888999999998887642210111134579999999999999999999999999999887    67777777777777


Q ss_pred             EEEEe---cCCCEEEEEeCCCceEEEEeecC
Q 005656           97 CIRFY---ANGRHILSAGQDRAFRLFSVIQD  124 (685)
Q Consensus        97 ~i~~~---~~~~~l~s~s~dg~i~vwd~~~~  124 (685)
                      ++-++   .++..++++...|.  +|.+.-.
T Consensus       177 ~vi~v~~t~~nS~llt~D~~Gs--f~~lv~n  205 (1206)
T KOG2079|consen  177 GVIFVGRTSQNSKLLTSDTGGS--FWKLVFN  205 (1206)
T ss_pred             eEEEEEEeCCCcEEEEccCCCc--eEEEEec
Confidence            76554   34556777776665  6766433

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.41  E-value=0.13  Score=53.82  Aligned_cols=110  Identities=15%  Similarity=0.219  Sum_probs=61.3

Q ss_pred             cEEEEEEccCCCCEEEEEe--CCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCC----CcEEEEecCCCcEEEEEecC
Q 005656            4 AVTALAFSSDGQPLLASGA--SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN----EPVLMSASADNSIKMWIFDT   77 (685)
Q Consensus         4 ~V~~l~fspdg~~~latg~--~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~----~~~l~s~s~D~~v~iWd~~~   77 (685)
                      ||..++|. ||+.++.|.-  .+|.+++=|   .+.+     |.-..|..+.|.|-    .+.|.+......|.||.+..
T Consensus        21 PvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~vi-----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~   91 (671)
T PF15390_consen   21 PVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVI-----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP   91 (671)
T ss_pred             cccceEec-CCCEEEEEeeeeeCCccccCC---ccEe-----eccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence            57778887 5664666542  233333222   1223     34456899999984    44566666788999998864


Q ss_pred             CC-CCCceeEecccC-----CCCCeEEEEecCCCEEEEEeCCCceEEEEee
Q 005656           78 TD-GDPRLLRFRSGH-----SAPPLCIRFYANGRHILSAGQDRAFRLFSVI  122 (685)
Q Consensus        78 ~~-~~~~~~~~~~~h-----~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~  122 (685)
                      .. ...+.+.....+     .--...+.|+|....|+.-.....-.++++.
T Consensus        92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~  142 (671)
T PF15390_consen   92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVH  142 (671)
T ss_pred             CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeee
Confidence            32 111222221111     1123567899988776665544433444443

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.30  E-value=0.01  Score=64.74  Aligned_cols=144  Identities=13%  Similarity=0.061  Sum_probs=89.5

Q ss_pred             cCEEEEEEcCCCCEEEEEE------CCC--eEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCC----------
Q 005656          253 GEVVGVACDSTNTLMISAG------YHG--DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD----------  314 (685)
Q Consensus       253 ~~v~~l~~~~~~~~l~s~s------~dg--~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------  314 (685)
                      ..+...+++|+|+.++...      .|+  .|.+++.. +.. ..+......+.-.|+|+|+.+++....          
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~  427 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDP  427 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCCCCCCceECCCCCceEEEecCcceEEEeccC
Confidence            4678899999999877665      243  45555643 222 333333458889999998877776533          


Q ss_pred             --CeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEE---EEcCCCceeeE-----Eee--ccceEEE
Q 005656          315 --LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRI---WDVILARQIDA-----IHV--DVSITAL  382 (685)
Q Consensus       315 --g~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~i---wd~~~~~~i~~-----~~~--~~~v~~v  382 (685)
                        +.+.+.++..+....   ...+.|..+.|||||..++... +|.|++   -....|. ...     +..  ...+.++
T Consensus       428 ~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~l  502 (591)
T PRK13616        428 ATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAVSL  502 (591)
T ss_pred             CCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc-eeecccEEeecccCCccccc
Confidence              234334444443322   2356799999999999888766 577877   4444554 111     211  2236889


Q ss_pred             EEcCCCCeEEEEEeCCCeEEEEE
Q 005656          383 SLSPNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       383 ~~spdg~~Lat~~~d~~~I~lW~  405 (685)
                      .|.+++.++ ++..++ ...+|.
T Consensus       503 ~W~~~~~L~-V~~~~~-~~~v~~  523 (591)
T PRK13616        503 DWRTGDSLV-VGRSDP-EHPVWY  523 (591)
T ss_pred             eEecCCEEE-EEecCC-CCceEE
Confidence            999999965 444443 445564

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.30  E-value=0.015  Score=63.59  Aligned_cols=178  Identities=13%  Similarity=0.107  Sum_probs=103.6

Q ss_pred             CCeEEEEEccCCCEEEEEe------cCC--cEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC-
Q 005656          203 TAVKACTISACGNFAVLGT------AGG--WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH-  273 (685)
Q Consensus       203 ~~v~~~~~s~~g~~l~~g~------~dg--~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d-  273 (685)
                      ..+...+++|+|+.++...      .++  .|++++.. +.. ..+.       .+  ...+.-.|+|+|+.+++.... 
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt-------~g--~~~t~PsWspDG~~lw~v~dg~  418 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVL-------EG--HSLTRPSWSLDADAVWVVVDGN  418 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeee-------cC--CCCCCceECCCCCceEEEecCc
Confidence            4678999999999987765      233  56666642 222 2221       02  237788999998877776532 


Q ss_pred             -----------CeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEE---EEcCCCe-eE---EEEe-cC
Q 005656          274 -----------GDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRL---FDVVALR-MV---RKFE-GH  334 (685)
Q Consensus       274 -----------g~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i---~d~~~~~-~~---~~~~-~h  334 (685)
                                 +.+.+.++..+....  .....|..+.|+|||..++... ++.|++   -....|. .+   +.+. +-
T Consensus       419 ~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l  495 (591)
T PRK13616        419 TVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGL  495 (591)
T ss_pred             ceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeeccc
Confidence                       233333444443333  3356799999999999888766 477777   4444453 11   1122 23


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CceeeEEee---ccceEEEEEcCCCCeEEEEEeC
Q 005656          335 TDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL-ARQIDAIHV---DVSITALSLSPNMDVLATAHVD  397 (685)
Q Consensus       335 ~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~-~~~i~~~~~---~~~v~~v~~spdg~~Lat~~~d  397 (685)
                      ...+.++.|.+++.++ .+..++.-.+|.+.- |.....+..   ..++.+++=+++  .++.+..+
T Consensus       496 ~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~  559 (591)
T PRK13616        496 GDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDAR  559 (591)
T ss_pred             CCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCC
Confidence            3346889999999855 555455555565442 322222222   344777777763  34444434

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.30  E-value=0.0011  Score=68.70  Aligned_cols=93  Identities=14%  Similarity=0.151  Sum_probs=73.0

Q ss_pred             cEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCee-EEEEeCCCcEEEEecCCCcEEEEEecCCCCCC
Q 005656            4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAII-SLHFFANEPVLMSASADNSIKMWIFDTTDGDP   82 (685)
Q Consensus         4 ~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~-~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~   82 (685)
                      .|.-+.|+|.-. ++|++..+|.|.+.-++ .+.+.++. -|...++ +++|.|||+.||.|-.||+|++.|+..+..  
T Consensus        22 ~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~qRlwtip-~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~--   96 (665)
T KOG4640|consen   22 NIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQRLWTIP-IPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR--   96 (665)
T ss_pred             ceEEEEEcCccc-hhheeccCCcEEEEEec-cceeEecc-CCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc--
Confidence            467789999887 99999999999999888 55566665 5777777 999999999999999999999999988742  


Q ss_pred             ceeEecccCCCCCeEEEEec
Q 005656           83 RLLRFRSGHSAPPLCIRFYA  102 (685)
Q Consensus        83 ~~~~~~~~h~~~v~~i~~~~  102 (685)
                       +......-..+|.++.|.+
T Consensus        97 -l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   97 -LVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             -eeccccccccchheeeccc
Confidence             2221223455677777753

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.28  E-value=0.18  Score=48.11  Aligned_cols=128  Identities=16%  Similarity=0.116  Sum_probs=84.1

Q ss_pred             CEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-
Q 005656          215 NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-  293 (685)
Q Consensus       215 ~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-  293 (685)
                      +.....-.+|...+||..+-+....+.         ..+.-.+++  .+++.|+.+.....++++|..+.+....+... 
T Consensus       101 ~l~qLTWk~~~~f~yd~~tl~~~~~~~---------y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~  169 (264)
T PF05096_consen  101 KLYQLTWKEGTGFVYDPNTLKKIGTFP---------YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTD  169 (264)
T ss_dssp             EEEEEESSSSEEEEEETTTTEEEEEEE----------SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EE
T ss_pred             EEEEEEecCCeEEEEccccceEEEEEe---------cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEE
Confidence            444555678899999999888877763         335566777  35666777766788999999887777666542 


Q ss_pred             -----CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEec------------C---CCCeEEEEEcCCCCEEEEE
Q 005656          294 -----CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG------------H---TDRITDFCFSEDGKWLLSS  353 (685)
Q Consensus       294 -----~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~------------h---~~~I~~l~~spdg~~l~s~  353 (685)
                           ..++-+.|. +|...|=.-....|...|..+|+++..+.-            +   ..-.+.||+.|..+.|...
T Consensus       170 ~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vT  248 (264)
T PF05096_consen  170 NGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVT  248 (264)
T ss_dssp             TTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEE
T ss_pred             CCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEE
Confidence                 345556665 566666666778899999999999887641            1   2457899999876655444


Q ss_pred             e
Q 005656          354 G  354 (685)
Q Consensus       354 s  354 (685)
                      +
T Consensus       249 G  249 (264)
T PF05096_consen  249 G  249 (264)
T ss_dssp             E
T ss_pred             e
Confidence            4

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.26  E-value=0.0047  Score=68.27  Aligned_cols=141  Identities=21%  Similarity=0.262  Sum_probs=95.1

Q ss_pred             CEEEEE-ecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcC-----CCCEEEEEECCCeEEEEECCCC--ce
Q 005656          215 NFAVLG-TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS-----TNTLMISAGYHGDIKVWDFKGR--DL  286 (685)
Q Consensus       215 ~~l~~g-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-----~~~~l~s~s~dg~i~iwd~~~~--~~  286 (685)
                      +.++.. .....|+..|+..|+.+.....       ....+|..++-+.     .+...+.|-.+..+..||.+-.  ++
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~-------~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~  566 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGKVVEEWKV-------HDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKL  566 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCcEEEEeec-------CCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCce
Confidence            344433 3457899999999999887752       2233355554321     1234566777889999998843  23


Q ss_pred             EE----EeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005656          287 KS----RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIW  362 (685)
Q Consensus       287 ~~----~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iw  362 (685)
                      +.    .+......+|++-+. ..+||+|+.+|.||+||-...+.-..+.+-..+|..|..+.||+||++.+ +..+.++
T Consensus       567 v~~~~k~Y~~~~~Fs~~aTt~-~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi  644 (794)
T PF08553_consen  567 VDSQSKQYSSKNNFSCFATTE-DGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLI  644 (794)
T ss_pred             eeccccccccCCCceEEEecC-CceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEE
Confidence            32    222235566665554 45899999999999999544343445667789999999999999998776 4567777


Q ss_pred             Ec
Q 005656          363 DV  364 (685)
Q Consensus       363 d~  364 (685)
                      +.
T Consensus       645 ~t  646 (794)
T PF08553_consen  645 DT  646 (794)
T ss_pred             EE
Confidence            75

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>smart00320 WD40 WD40 repeats

Probab=97.21  E-value=0.00097  Score=42.59  Aligned_cols=39  Identities=31%  Similarity=0.525  Sum_probs=33.8

Q ss_pred             CeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEE
Q 005656           35 RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI   74 (685)
Q Consensus        35 ~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd   74 (685)
                      ++....+. .|...|.++.|.+++..+++++.|+.+++|+
T Consensus         2 ~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLK-GHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEE-ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            34556666 7999999999999999999999999999995

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.20  E-value=0.09  Score=54.28  Aligned_cols=80  Identities=11%  Similarity=0.055  Sum_probs=55.0

Q ss_pred             cCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC--CceeEEEEeec-----------------CC-EEEEEe
Q 005656          253 GEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRV-----------------NG-LLATVA  312 (685)
Q Consensus       253 ~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~i~~~~~~~~-----------------~~-~l~~~~  312 (685)
                      ..+.+++.+|.+++.++...=|.|.++|+.++..++.++.-  ..+.-+.....                 .. +++-+-
T Consensus       308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap  387 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP  387 (415)
T ss_pred             ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence            45788999999998888877899999999998887776642  11111111111                 01 334455


Q ss_pred             CCCeEEEEEcCCCeeEEEEe
Q 005656          313 DDLVIRLFDVVALRMVRKFE  332 (685)
Q Consensus       313 ~dg~I~i~d~~~~~~~~~~~  332 (685)
                      .-|.|.||.+++|..+..+.
T Consensus       388 rRg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  388 RRGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             cCCeEEEEecCCCCEEEEEE
Confidence            67899999998887766665

>PF09384 UTP15_C: UTP15 C terminal; InterPro: IPR018983 This entry represents the C-terminal domain of the U3 small nucleolar RNA-associated protein 15 (UTP15)

Probab=97.19  E-value=0.0031  Score=55.20  Aligned_cols=75  Identities=16%  Similarity=0.194  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhh
Q 005656          604 YLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKARKLLEVQSAVWQKIDKMFQSARCVVSF  679 (685)
Q Consensus       604 ~~~~~~~l~~l~~~l~~~~~~e~~~~~l~~~l~~h~~~l~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  679 (685)
                      ...+.++|+|+...+...+.+.++..+...+|.+++..+.+++.+...+..|+..++.+.+..+++ ....|||.-
T Consensus        73 e~~L~piL~Fl~k~i~~pr~~~~l~~v~~~ildiY~~~~~~s~~v~~~~~~L~~~v~~E~~~~~~l-~~l~G~ld~  147 (148)
T PF09384_consen   73 EESLEPILKFLIKNITDPRYTRILVDVANIILDIYSPVIGQSPEVDKLFQKLQRKVQEELQLQKEL-LELQGMLDM  147 (148)
T ss_pred             HHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHhh
Confidence            477999999999999999999999999999999999999999999999999999999999888887 666676653

This protein is involved in nucleolar processing of pre-18S ribosomal RNA, and is required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). UTP15 is a component of the ribosomal small subunit (SSU) processome, which is a large ribonucleoprotein (RNP) required for processing of precursors to the small subunit RNA, the 18S, of the ribosome [, ]. This domain is found C-terminal to the WD40 repeat (IPR001680 from INTERPRO). UTP15 associates with U3 snoRNA, which is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA []. ; GO: 0006364 rRNA processing, 0005730 nucleolus

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=97.12  E-value=0.3  Score=54.57  Aligned_cols=79  Identities=18%  Similarity=0.238  Sum_probs=50.8

Q ss_pred             CCcEEEEEEccCC-----CCEEEEEeCCCcEEEEeCCCCeeeEEee-cccccCeeEEEEeC---CC------cEEEEecC
Q 005656            2 RGAVTALAFSSDG-----QPLLASGASSGVISIWNLEKRRLQSVIR-EAHDNAIISLHFFA---NE------PVLMSASA   66 (685)
Q Consensus         2 ~~~V~~l~fspdg-----~~~latg~~dg~I~vwd~~~~~~~~~~~-~~h~~~V~~l~~sp---~~------~~l~s~s~   66 (685)
                      +..|.|+++.+++     ..+++.|+.|+.+++..+....++..+. .+-..++.++.+-+   ++      -+|.+|-.
T Consensus       582 ~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~  661 (1205)
T KOG1898|consen  582 STDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGLR  661 (1205)
T ss_pred             ceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccccccCCCccceEEEEecccCCccceeEEEEeccc
Confidence            3568899999876     2489999999999999988665555443 13444555555543   22      25666666


Q ss_pred             CCcEEEEEecCCCC
Q 005656           67 DNSIKMWIFDTTDG   80 (685)
Q Consensus        67 D~~v~iWd~~~~~~   80 (685)
                      +|.+.-..++.-.+
T Consensus       662 NGvllR~~id~v~G  675 (1205)
T KOG1898|consen  662 NGVLLRFVIDTVTG  675 (1205)
T ss_pred             ccEEEEEEeccccc
Confidence            66655554444433

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.09  E-value=0.29  Score=46.81  Aligned_cols=183  Identities=12%  Similarity=0.045  Sum_probs=119.5

Q ss_pred             CeEEEEEccCCCEEEEEecCC--cEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005656          204 AVKACTISACGNFAVLGTAGG--WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF  281 (685)
Q Consensus       204 ~v~~~~~s~~g~~l~~g~~dg--~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~  281 (685)
                      ....+.+..+|.++-+.+.-|  .|+.+|+.+|+......-       ...----+++...+ +...-.=.++...+||.
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l-------~~~~FgEGit~~~d-~l~qLTWk~~~~f~yd~  117 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPL-------PPRYFGEGITILGD-KLYQLTWKEGTGFVYDP  117 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE--------TTT--EEEEEEETT-EEEEEESSSSEEEEEET
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEEC-------CccccceeEEEECC-EEEEEEecCCeEEEEcc
Confidence            345677777777777766666  799999999987654421       22222334444432 33333336789999999


Q ss_pred             CCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecC-----CCCeEEEEEcCCCCEEEEEeCC
Q 005656          282 KGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH-----TDRITDFCFSEDGKWLLSSGMD  356 (685)
Q Consensus       282 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h-----~~~I~~l~~spdg~~l~s~s~D  356 (685)
                      .+.+.+.++.....-..++  .+++.|+.......++++|..+.+..+++.-.     -..++-+.|- +|...|=.=..
T Consensus       118 ~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~t  194 (264)
T PF05096_consen  118 NTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQT  194 (264)
T ss_dssp             TTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTS
T ss_pred             ccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCC
Confidence            9999998888776555666  56777888877889999999988877776532     2346677776 67666655556


Q ss_pred             CcEEEEEcCCCceeeEEee----------------ccceEEEEEcCCCCeEEEEEeC
Q 005656          357 GSLRIWDVILARQIDAIHV----------------DVSITALSLSPNMDVLATAHVD  397 (685)
Q Consensus       357 g~I~iwd~~~~~~i~~~~~----------------~~~v~~v~~spdg~~Lat~~~d  397 (685)
                      ..|..-|..+|+.+..+..                ..-.+.+++.|..+.|.+++..
T Consensus       195 d~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~  251 (264)
T PF05096_consen  195 DRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL  251 (264)
T ss_dssp             SEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred             CeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence            6788889999998887742                0127899999988877777644

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.08  E-value=0.15  Score=46.89  Aligned_cols=144  Identities=10%  Similarity=0.136  Sum_probs=89.9

Q ss_pred             CcCEEEEEEcCCCCEEEEEECC---------CeEEEEECCCCceEEEeecCCceeEEEEeecCC-EEEEEeCCCeEEEEE
Q 005656          252 NGEVVGVACDSTNTLMISAGYH---------GDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG-LLATVADDLVIRLFD  321 (685)
Q Consensus       252 ~~~v~~l~~~~~~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~I~i~d  321 (685)
                      ..+...-.++|+|++++-.-.|         |.++.|-.. ++....+..-.-.+.++|+.+.+ +.++-+.+..|.-||
T Consensus       108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~d  186 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYD  186 (310)
T ss_pred             hcccccCccCCCCceeeeeeccccccccccccEEEEeccC-CCceeeehhccCCccccccccCcEEEEEccCceEEeeee
Confidence            4456667789999984432222         334444322 22222222223445678887777 445556677887777


Q ss_pred             --cCCCe-----eEEEEecC---C-CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccc-eEEEEEcC-CC
Q 005656          322 --VVALR-----MVRKFEGH---T-DRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSP-NM  388 (685)
Q Consensus       322 --~~~~~-----~~~~~~~h---~-~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~sp-dg  388 (685)
                        ..+|.     .+..++..   . -..-.++...+|.+.+++-..|+|...|..+|+.+..+..+.+ ++|++|-- +-
T Consensus       187 yd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~  266 (310)
T KOG4499|consen  187 YDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNL  266 (310)
T ss_pred             cCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCc
Confidence              55553     33333321   1 1123456666888888888889999999999999999998877 99999954 33


Q ss_pred             CeEEEEEe
Q 005656          389 DVLATAHV  396 (685)
Q Consensus       389 ~~Lat~~~  396 (685)
                      ..|++++.
T Consensus       267 d~~yvT~a  274 (310)
T KOG4499|consen  267 DILYVTTA  274 (310)
T ss_pred             cEEEEEeh
Confidence            45555543

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.06  E-value=0.073  Score=43.19  Aligned_cols=100  Identities=11%  Similarity=0.186  Sum_probs=70.6

Q ss_pred             EEEEEEc---CCC-CEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEE
Q 005656          255 VVGVACD---STN-TLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRK  330 (685)
Q Consensus       255 v~~l~~~---~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~  330 (685)
                      |+++++.   .+| ..|++|+.|..|++|+-  ...+..+.....+++++.... ..++.+..+|+|-+|+-..  .+..
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--RlWR   76 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RLWR   76 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--eeee
Confidence            4555543   333 57999999999999984  467888888888998888775 6789999999999997532  2333


Q ss_pred             EecCCCCeEEEEEcC-C--C-CEEEEEeCCCcEE
Q 005656          331 FEGHTDRITDFCFSE-D--G-KWLLSSGMDGSLR  360 (685)
Q Consensus       331 ~~~h~~~I~~l~~sp-d--g-~~l~s~s~Dg~I~  360 (685)
                      .+. ...++++++.. +  | .-|++|-.+|.|-
T Consensus        77 iKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   77 IKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             ecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            332 23366666543 3  3 3688888888764

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.04  E-value=0.03  Score=57.39  Aligned_cols=135  Identities=11%  Similarity=0.213  Sum_probs=97.0

Q ss_pred             EEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCC-------EEEEEeCCCeEEEEEcCCC-e-eEEEEecCC--
Q 005656          267 MISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG-------LLATVADDLVIRLFDVVAL-R-MVRKFEGHT--  335 (685)
Q Consensus       267 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~dg~I~i~d~~~~-~-~~~~~~~h~--  335 (685)
                      +.++.....++-.|+..|+.+..+..+..|+-+.+.|+.+       .-++|-+|..|.-||.+-. . .+..-.+|.  
T Consensus       349 l~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~  428 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYS  428 (644)
T ss_pred             eeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccc
Confidence            3445566779999999999999999988888888888754       2346777889999998732 2 222333332  


Q ss_pred             --CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceee-EEe-eccceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656          336 --DRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQID-AIH-VDVSITALSLSPNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       336 --~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~-~~~-~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~  405 (685)
                        ....|.+-..+| ++|.||.+|.||+||- .+..-. .+. ...+|..|..+.+|++++.++..  .+-+-+
T Consensus       429 ~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t--yLlLi~  498 (644)
T KOG2395|consen  429 TKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKT--YLLLID  498 (644)
T ss_pred             cccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEeccc--EEEEEE
Confidence              335566666565 8999999999999997 444333 333 35569999999999999988755  555554

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.03  E-value=0.36  Score=49.93  Aligned_cols=83  Identities=19%  Similarity=0.222  Sum_probs=60.5

Q ss_pred             CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEE-EEEc-CC----------------CCE-EEEEe
Q 005656          294 CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITD-FCFS-ED----------------GKW-LLSSG  354 (685)
Q Consensus       294 ~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~-l~~s-pd----------------g~~-l~s~s  354 (685)
                      ..+.+++.+|++++.|+...=|.|.++|+.++..++.++|-.+.=.. +... +.                ..+ ++-+-
T Consensus       308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap  387 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP  387 (415)
T ss_pred             ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence            44778999999999999888899999999999999988875543111 1110 10                112 33556


Q ss_pred             CCCcEEEEEcCCCceeeEEeec
Q 005656          355 MDGSLRIWDVILARQIDAIHVD  376 (685)
Q Consensus       355 ~Dg~I~iwd~~~~~~i~~~~~~  376 (685)
                      .-|.|.||++++|..+..+...
T Consensus       388 rRg~lEvW~~~~g~Rv~a~~v~  409 (415)
T PF14655_consen  388 RRGILEVWSMRQGPRVAAFNVG  409 (415)
T ss_pred             cCCeEEEEecCCCCEEEEEEeC
Confidence            7899999999999988877654

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.02  E-value=0.13  Score=49.26  Aligned_cols=119  Identities=11%  Similarity=0.150  Sum_probs=85.2

Q ss_pred             CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCC
Q 005656            3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP   82 (685)
Q Consensus         3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~   82 (685)
                      +.|+++.|+|+.+.++++ ...+.-.||=..+|..+.++.-..-..--.+++..++.+.++--.++.+.++.++......
T Consensus        86 ~nvS~LTynp~~rtLFav-~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~  164 (316)
T COG3204          86 ANVSSLTYNPDTRTLFAV-TNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVI  164 (316)
T ss_pred             ccccceeeCCCcceEEEe-cCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEE
Confidence            348999999999845554 4456666776678888888763333445678899899899988889999999887763211


Q ss_pred             c------eeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEee
Q 005656           83 R------LLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI  122 (685)
Q Consensus        83 ~------~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~  122 (685)
                      .      .+..........-.++|.|..+.|+.+-.-.-+++|.+.
T Consensus       165 ~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~  210 (316)
T COG3204         165 SAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT  210 (316)
T ss_pred             eccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence            1      111111225667889999998888888888888888776

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.01  E-value=0.18  Score=56.86  Aligned_cols=164  Identities=14%  Similarity=0.175  Sum_probs=100.4

Q ss_pred             cCCCEEEEEecCCcEEEEECCCCccccccccccccccC----CCCcCEEEEEEcC--CCCEEEEEEC----------CCe
Q 005656          212 ACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNY----AHNGEVVGVACDS--TNTLMISAGY----------HGD  275 (685)
Q Consensus       212 ~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~----~h~~~v~~l~~~~--~~~~l~s~s~----------dg~  275 (685)
                      .++..+++++.||.+.-.|..+|+....+.........    .....-..+.-.|  .+..+++|+.          +|.
T Consensus       258 ~~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~  337 (764)
T TIGR03074       258 DCARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGV  337 (764)
T ss_pred             ccCCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcE
Confidence            36778999999999999999999988765321100000    0000000111111  1335555542          688


Q ss_pred             EEEEECCCCceEEEeecCC------------------ce-eEEEEeecCCEEEEEeC------------------CCeEE
Q 005656          276 IKVWDFKGRDLKSRWEVGC------------------SL-VKIVYHRVNGLLATVAD------------------DLVIR  318 (685)
Q Consensus       276 i~iwd~~~~~~~~~~~~~~------------------~i-~~~~~~~~~~~l~~~~~------------------dg~I~  318 (685)
                      |+-+|.++|+++..+....                  .+ ..+++.+...+++.+..                  .++|.
T Consensus       338 I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slv  417 (764)
T TIGR03074       338 IRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLV  417 (764)
T ss_pred             EEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEE
Confidence            9999999999988775320                  01 23455555555554321                  24677


Q ss_pred             EEEcCCCeeEEEEecCCCCe---------EEEEEcC-CCC---EEEEEeCCCcEEEEEcCCCceeeEEee
Q 005656          319 LFDVVALRMVRKFEGHTDRI---------TDFCFSE-DGK---WLLSSGMDGSLRIWDVILARQIDAIHV  375 (685)
Q Consensus       319 i~d~~~~~~~~~~~~h~~~I---------~~l~~sp-dg~---~l~s~s~Dg~I~iwd~~~~~~i~~~~~  375 (685)
                      -.|.++|+..-.++.....+         .-+.+.. +|+   .++.++.+|.++++|..+|+.+..+..
T Consensus       418 ALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e  487 (764)
T TIGR03074       418 ALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEE  487 (764)
T ss_pred             EEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeecee
Confidence            78889998887776422111         1122322 563   788999999999999999998876543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.96  E-value=0.26  Score=47.22  Aligned_cols=175  Identities=10%  Similarity=0.104  Sum_probs=109.7

Q ss_pred             ccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCc
Q 005656           89 SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC  168 (685)
Q Consensus        89 ~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (685)
                      .|-...+.++.|+|+.+.|++......-.||=...|+..+.+...                                   
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~-----------------------------------  126 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT-----------------------------------  126 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccc-----------------------------------
Confidence            355566999999999999999888887777766667666655321                                   


Q ss_pred             ceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccc--cccc
Q 005656          169 NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD--MSER  246 (685)
Q Consensus       169 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~--~~~~  246 (685)
                                                      .-...-.+.+..+|.++++--.++.++++.+..+........  .+..
T Consensus       127 --------------------------------g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~  174 (316)
T COG3204         127 --------------------------------GFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLG  174 (316)
T ss_pred             --------------------------------ccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEecc
Confidence                                            123344567777778887777788888877765533322221  1111


Q ss_pred             ccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEe----ec-------CCceeEEEEeecCC-EEEEEeCC
Q 005656          247 SNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRW----EV-------GCSLVKIVYHRVNG-LLATVADD  314 (685)
Q Consensus       247 ~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~----~~-------~~~i~~~~~~~~~~-~l~~~~~d  314 (685)
                      .....+...-+++|+|.+..++.+-.-.-+.||.+....-....    ..       -..+..+.|++..+ +++-+..+
T Consensus       175 ~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ES  254 (316)
T COG3204         175 TTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDES  254 (316)
T ss_pred             ccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCC
Confidence            11122667889999999998888877676777665532211000    00       03466777876544 66666667


Q ss_pred             CeEEEEEcCCCeeEEEE
Q 005656          315 LVIRLFDVVALRMVRKF  331 (685)
Q Consensus       315 g~I~i~d~~~~~~~~~~  331 (685)
                      +.+.-.|.. |.++..+
T Consensus       255 r~l~Evd~~-G~~~~~l  270 (316)
T COG3204         255 RRLLEVDLS-GEVIELL  270 (316)
T ss_pred             ceEEEEecC-CCeeeeE
Confidence            777777765 3334433

>PHA02713 hypothetical protein; Provisional

Probab=96.93  E-value=0.086  Score=57.83  Aligned_cols=147  Identities=9%  Similarity=0.026  Sum_probs=78.9

Q ss_pred             CCCEEEEEecCC-----cEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCC-------------
Q 005656          213 CGNFAVLGTAGG-----WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG-------------  274 (685)
Q Consensus       213 ~g~~l~~g~~dg-----~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg-------------  274 (685)
                      +|+..++|+.+|     .+..||..++.....-. .+     ........++  -+|...+.||.++             
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~-mp-----~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~  422 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPD-MP-----IALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSI  422 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCC-CC-----cccccccEEE--ECCEEEEEeCCCcccccccccccccc
Confidence            566667777654     48889988765432111 00     0011111122  2566677776542             


Q ss_pred             ----------eEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCC------CeEEEEEcCC-C--eeEEEEecC
Q 005656          275 ----------DIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADD------LVIRLFDVVA-L--RMVRKFEGH  334 (685)
Q Consensus       275 ----------~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d------g~I~i~d~~~-~--~~~~~~~~h  334 (685)
                                .+..||..+.+-...-... .........-++++.++|+.+      ..+..||..+ .  ..+..+...
T Consensus       423 ~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~  502 (557)
T PHA02713        423 DMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR  502 (557)
T ss_pred             cccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc
Confidence                      4677887765433221111 111112233356777777654      2467899886 3  444444433


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCC--cEEEEEcCCCce
Q 005656          335 TDRITDFCFSEDGKWLLSSGMDG--SLRIWDVILARQ  369 (685)
Q Consensus       335 ~~~I~~l~~spdg~~l~s~s~Dg--~I~iwd~~~~~~  369 (685)
                      ......+.+  +|+..++|+.||  .+..||..+.+-
T Consensus       503 r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W  537 (557)
T PHA02713        503 LSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEW  537 (557)
T ss_pred             cccceeEEE--CCEEEEEeeecceeehhhcCcccccc
Confidence            333333444  788888999888  667777666543

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.90  E-value=0.12  Score=56.66  Aligned_cols=96  Identities=10%  Similarity=0.093  Sum_probs=52.0

Q ss_pred             EEEEEeCCC------cEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCC-Cc---EEEEEecCCCCCCceeE
Q 005656           17 LLASGASSG------VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD-NS---IKMWIFDTTDGDPRLLR   86 (685)
Q Consensus        17 ~latg~~dg------~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D-~~---v~iWd~~~~~~~~~~~~   86 (685)
                      +++.|+.++      .+..+|..++.-.....-.+...-.+++... +.+.++||.| |.   -.+|.++.....+..+.
T Consensus       287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~-~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a  365 (571)
T KOG4441|consen  287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLN-GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVA  365 (571)
T ss_pred             EEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEEC-CEEEEEccccCCCcccceEEEecCCCCceeccC
Confidence            778888763      5788898887544333223344445555554 5688888888 32   12344444333333332


Q ss_pred             ecccCCCCCeEEEEecCCCEEEEEeCCCc
Q 005656           87 FRSGHSAPPLCIRFYANGRHILSAGQDRA  115 (685)
Q Consensus        87 ~~~~h~~~v~~i~~~~~~~~l~s~s~dg~  115 (685)
                      .............  -+|...++||.||.
T Consensus       366 ~M~~~R~~~~v~~--l~g~iYavGG~dg~  392 (571)
T KOG4441|consen  366 PMNTKRSDFGVAV--LDGKLYAVGGFDGE  392 (571)
T ss_pred             CccCccccceeEE--ECCEEEEEeccccc
Confidence            2222222222222  25778888888864

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.90  E-value=0.0027  Score=57.88  Aligned_cols=103  Identities=16%  Similarity=0.165  Sum_probs=68.6

Q ss_pred             CCEEEEEECCCeEEEEECCC-CceEEEeec-CCceeEEE-EeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCC-CCeE
Q 005656          264 NTLMISAGYHGDIKVWDFKG-RDLKSRWEV-GCSLVKIV-YHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT-DRIT  339 (685)
Q Consensus       264 ~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~-~~~i~~~~-~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~-~~I~  339 (685)
                      +..++.|+.+|.|++|+... +........ ...+.++. --.++.+..+++.||.|+.|++.-.+.+.....|+ .++.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e  149 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE  149 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence            45688999999999998772 111111111 12333322 23345588899999999999999988888777787 5555


Q ss_pred             EEEEcCCCCEEEEE--eCCCcEEEEEcCC
Q 005656          340 DFCFSEDGKWLLSS--GMDGSLRIWDVIL  366 (685)
Q Consensus       340 ~l~~spdg~~l~s~--s~Dg~I~iwd~~~  366 (685)
                      ....+..++.++.+  |.|..++.|++..
T Consensus       150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             eeEEecCCceEEeeccccchhhhhcchhh
Confidence            55555566666666  6666677776653

>PHA02713 hypothetical protein; Provisional

Probab=96.89  E-value=0.11  Score=56.89  Aligned_cols=101  Identities=11%  Similarity=0.034  Sum_probs=52.2

Q ss_pred             cEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC------CeEEEEECCC-CceEEE--eecCCc
Q 005656          225 WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH------GDIKVWDFKG-RDLKSR--WEVGCS  295 (685)
Q Consensus       225 ~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d------g~i~iwd~~~-~~~~~~--~~~~~~  295 (685)
                      .+..||..+......-.     ...+...  .+++ .-+++..+.||.+      ..+..||..+ .+-...  +.....
T Consensus       433 ~ve~YDP~td~W~~v~~-----m~~~r~~--~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~  504 (557)
T PHA02713        433 KVIRYDTVNNIWETLPN-----FWTGTIR--PGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS  504 (557)
T ss_pred             eEEEECCCCCeEeecCC-----CCccccc--CcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc
Confidence            47788888775532211     0001111  1222 2246666667654      2467899886 443322  222211


Q ss_pred             eeEEEEeecCCEEEEEeCCC--eEEEEEcCCCeeEEEEecC
Q 005656          296 LVKIVYHRVNGLLATVADDL--VIRLFDVVALRMVRKFEGH  334 (685)
Q Consensus       296 i~~~~~~~~~~~l~~~~~dg--~I~i~d~~~~~~~~~~~~h  334 (685)
                      ...++ .-+|++.++|+.++  .+..||..+.+-......|
T Consensus       505 ~~~~~-~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~  544 (557)
T PHA02713        505 ALHTI-LHDNTIMMLHCYESYMLQDTFNVYTYEWNHICHQH  544 (557)
T ss_pred             cceeE-EECCEEEEEeeecceeehhhcCcccccccchhhhc
Confidence            12222 23678888998888  6777887776543333334

>PRK10115 protease 2; Provisional

Probab=96.88  E-value=1.2  Score=50.33  Aligned_cols=58  Identities=14%  Similarity=0.070  Sum_probs=38.1

Q ss_pred             EEEEEEccCCCCEEEEE-eCC----CcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecC
Q 005656            5 VTALAFSSDGQPLLASG-ASS----GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA   66 (685)
Q Consensus         5 V~~l~fspdg~~~latg-~~d----g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~   66 (685)
                      +..+.+||||+ +||.+ +.+    ..|++-|+.++..+.... ...  -..++|++|++.|+.+..
T Consensus       129 l~~~~~Spdg~-~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i-~~~--~~~~~w~~D~~~~~y~~~  191 (686)
T PRK10115        129 LGGMAITPDNT-IMALAEDFLSRRQYGIRFRNLETGNWYPELL-DNV--EPSFVWANDSWTFYYVRK  191 (686)
T ss_pred             EeEEEECCCCC-EEEEEecCCCcEEEEEEEEECCCCCCCCccc-cCc--ceEEEEeeCCCEEEEEEe
Confidence            66788999999 66644 333    358899998886433322 121  256999999986655543

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.84  E-value=0.0044  Score=68.46  Aligned_cols=100  Identities=17%  Similarity=0.287  Sum_probs=77.3

Q ss_pred             CCCEEEEEECCCeEEEEECCCCce--EEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEE
Q 005656          263 TNTLMISAGYHGDIKVWDFKGRDL--KSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITD  340 (685)
Q Consensus       263 ~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~  340 (685)
                      .+..++.|+..|.+-..|..+.-.  .+-....+++++++|+.+|.+++.|-.+|.|.+||+.+++.++.+..|..+.++
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            455788888889999888875311  222334589999999999999999999999999999999999999877777665


Q ss_pred             EE---EcCCCCEEEEEeCCCcEEEEEc
Q 005656          341 FC---FSEDGKWLLSSGMDGSLRIWDV  364 (685)
Q Consensus       341 l~---~spdg~~l~s~s~Dg~I~iwd~  364 (685)
                      +-   +..++..++++..-|.  +|.+
T Consensus       178 vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  178 VIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            54   4446667888877775  5654

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.74  E-value=0.91  Score=47.16  Aligned_cols=112  Identities=14%  Similarity=0.193  Sum_probs=64.3

Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCeee---EEeecccccCeeEEEEeC-----CCcEEEEecCCCcEEEEEecCCCCC--
Q 005656           12 SDGQPLLASGASSGVISIWNLEKRRLQ---SVIREAHDNAIISLHFFA-----NEPVLMSASADNSIKMWIFDTTDGD--   81 (685)
Q Consensus        12 pdg~~~latg~~dg~I~vwd~~~~~~~---~~~~~~h~~~V~~l~~sp-----~~~~l~s~s~D~~v~iWd~~~~~~~--   81 (685)
                      ++++..+++|+..|.++||+...+...   ..+...-..+|..++.-.     +...||. -.-+.+.||.+...++.  
T Consensus        34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~  112 (418)
T PF14727_consen   34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVE  112 (418)
T ss_pred             CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcc
Confidence            445558999999999999998654311   112223457888887642     2224444 45567888887544332  


Q ss_pred             ---CceeEecccCCC--CCeEEEEecC-----CCEEEEEeCCCceEEEEeecC
Q 005656           82 ---PRLLRFRSGHSA--PPLCIRFYAN-----GRHILSAGQDRAFRLFSVIQD  124 (685)
Q Consensus        82 ---~~~~~~~~~h~~--~v~~i~~~~~-----~~~l~s~s~dg~i~vwd~~~~  124 (685)
                         .-.+.....|.-  ....+++-|-     -.++..-+.||.+.+|+-+.-
T Consensus       113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~  165 (418)
T PF14727_consen  113 HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF  165 (418)
T ss_pred             cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE
Confidence               112222223332  2233333331     257788899999999975433

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.66  E-value=0.0024  Score=58.16  Aligned_cols=111  Identities=14%  Similarity=0.154  Sum_probs=69.0

Q ss_pred             ccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccc
Q 005656          162 IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYL  241 (685)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~  241 (685)
                      .+...|..-+.++..++.+++|......  .+.-............+....++.+..++..+|.|+.|+++.++......
T Consensus        64 ~~v~~~~~~~~vG~~dg~v~~~n~n~~g--~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g  141 (238)
T KOG2444|consen   64 QRVVTASAKLMVGTSDGAVYVFNWNLEG--AHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG  141 (238)
T ss_pred             eeecccCceEEeecccceEEEecCCccc--hHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeec
Confidence            4445566678888888888888776221  11111111222333444455567799999999999999999887766553


Q ss_pred             cccccccCCCC-cCEEEEEEcCCCCEEEEE--ECCCeEEEEECC
Q 005656          242 DMSERSNYAHN-GEVVGVACDSTNTLMISA--GYHGDIKVWDFK  282 (685)
Q Consensus       242 ~~~~~~~~~h~-~~v~~l~~~~~~~~l~s~--s~dg~i~iwd~~  282 (685)
                              .|+ .++........++.++.+  |.|..++.|++.
T Consensus       142 --------~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  142 --------QHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             --------cccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence                    455 445555555555555555  566666666654

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.60  E-value=0.92  Score=47.04  Aligned_cols=66  Identities=11%  Similarity=0.017  Sum_probs=38.7

Q ss_pred             cCeeEEEEeCCCcEEEEec-----------CCC-cEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCC
Q 005656           47 NAIISLHFFANEPVLMSAS-----------ADN-SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR  114 (685)
Q Consensus        47 ~~V~~l~~sp~~~~l~s~s-----------~D~-~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg  114 (685)
                      .....|+|.++|+++++-.           ..+ .|.+++-..+++.......+...-..++.+++.++|  |++++...
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence            3467889999998777653           122 566665433344333333333334467889999888  44444443

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.59  E-value=0.62  Score=45.31  Aligned_cols=117  Identities=14%  Similarity=0.147  Sum_probs=69.6

Q ss_pred             cEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEe-cCCCCCC
Q 005656            4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF-DTTDGDP   82 (685)
Q Consensus         4 ~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~-~~~~~~~   82 (685)
                      .+.+.++++||+.+.++...++.-.+|-...+........+  ..+....|++++...+....+...+++.. ..+....
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~  102 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP  102 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence            57889999999844444423333344433333333333213  37888999999877777666677777742 2222222


Q ss_pred             ceeEecccCCCCCeEEEEecCCCEEEEEe---CCCceEEEEeec
Q 005656           83 RLLRFRSGHSAPPLCIRFYANGRHILSAG---QDRAFRLFSVIQ  123 (685)
Q Consensus        83 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~s---~dg~i~vwd~~~  123 (685)
                      ..+... .-...|..++++|||..++...   .++.|.+--+..
T Consensus       103 ~~v~~~-~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r  145 (253)
T PF10647_consen  103 VEVDWP-GLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVR  145 (253)
T ss_pred             EEeccc-ccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEe
Confidence            222221 1122899999999999887665   346666665543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.56  E-value=0.53  Score=48.08  Aligned_cols=200  Identities=14%  Similarity=0.109  Sum_probs=98.4

Q ss_pred             CCCEEEEEe-cCCcEEEEECCCCcccccccccccc---ccCCCCcCEEEEEEcCCCCEEEEEE--C----CCeEEEEECC
Q 005656          213 CGNFAVLGT-AGGWIERFNLQSGISRGSYLDMSER---SNYAHNGEVVGVACDSTNTLMISAG--Y----HGDIKVWDFK  282 (685)
Q Consensus       213 ~g~~l~~g~-~dg~i~~~d~~~~~~~~~~~~~~~~---~~~~h~~~v~~l~~~~~~~~l~s~s--~----dg~i~iwd~~  282 (685)
                      ..++|++.+ .++.|+++|+.+......+......   .....-..-..+-.-|+|+.++++-  .    -|.+.+.|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            456777766 6789999999865433332211110   0000112223344557888888763  2    2468889988


Q ss_pred             CCceEEEeecC----CceeEEEEeecCCEEEEEeC--------------------CCeEEEEEcCCCeeEEEEecCC--C
Q 005656          283 GRDLKSRWEVG----CSLVKIVYHRVNGLLATVAD--------------------DLVIRLFDVVALRMVRKFEGHT--D  336 (685)
Q Consensus       283 ~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~--------------------dg~I~i~d~~~~~~~~~~~~h~--~  336 (685)
                      +......+..+    .--..+-|.|..+.+++...                    ..++.+||+.+++.++++.--.  .
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~  245 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ  245 (461)
T ss_dssp             T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred             cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence            88887777654    23456778888888877642                    3589999999999999987432  2


Q ss_pred             CeEEEEEcCC--CCEEEEE-eCCCcEEEEEc-CCCc----eeeEEee------------------ccceEEEEEcCCCCe
Q 005656          337 RITDFCFSED--GKWLLSS-GMDGSLRIWDV-ILAR----QIDAIHV------------------DVSITALSLSPNMDV  390 (685)
Q Consensus       337 ~I~~l~~spd--g~~l~s~-s~Dg~I~iwd~-~~~~----~i~~~~~------------------~~~v~~v~~spdg~~  390 (685)
                      .+..+.|..+  ..+=+++ ...++|..|-- ..++    .+-.+..                  +.-|+.+..|.|.++
T Consensus       246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf  325 (461)
T PF05694_consen  246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF  325 (461)
T ss_dssp             EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred             ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence            3556777553  4443333 34444544433 3332    1111211                  112899999999999


Q ss_pred             EEEEEeCCCeEEEEEcCCCcCC
Q 005656          391 LATAHVDQNGVYLWVNRCMFSG  412 (685)
Q Consensus       391 Lat~~~d~~~I~lW~~~~~~~~  412 (685)
                      |.+++--.+.|+.||....+.|
T Consensus       326 LYvs~W~~GdvrqYDISDP~~P  347 (461)
T PF05694_consen  326 LYVSNWLHGDVRQYDISDPFNP  347 (461)
T ss_dssp             EEEEETTTTEEEEEE-SSTTS-
T ss_pred             EEEEcccCCcEEEEecCCCCCC
Confidence            9999987779999997665544

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.55  E-value=0.32  Score=47.36  Aligned_cols=147  Identities=13%  Similarity=0.045  Sum_probs=92.4

Q ss_pred             CEEEEEEcCCCCEEEEEE---CCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEE-cCCCeeEE
Q 005656          254 EVVGVACDSTNTLMISAG---YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFD-VVALRMVR  329 (685)
Q Consensus       254 ~v~~l~~~~~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d-~~~~~~~~  329 (685)
                      .+...+++++++.++...   ....++++...  ...........+..-.|++++...++...+...+++. ..+++...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~  102 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP  102 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence            688999999998776655   23345555433  3333332445788889999988777766666666663 33332221


Q ss_pred             -EEec--CCCCeEEEEEcCCCCEEEEEe---CCCcEEEEEcC---CC---ceeeEEe----eccceEEEEEcCCCCeEEE
Q 005656          330 -KFEG--HTDRITDFCFSEDGKWLLSSG---MDGSLRIWDVI---LA---RQIDAIH----VDVSITALSLSPNMDVLAT  393 (685)
Q Consensus       330 -~~~~--h~~~I~~l~~spdg~~l~s~s---~Dg~I~iwd~~---~~---~~i~~~~----~~~~v~~v~~spdg~~Lat  393 (685)
                       ....  -.+.|+.+.+||||..++...   .++.|.+=-+.   .+   .+...+.    ....+++++|.+++.+++.
T Consensus       103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~  182 (253)
T PF10647_consen  103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVL  182 (253)
T ss_pred             EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEE
Confidence             1221  112899999999999887655   45777777553   23   1111111    1345999999999998888


Q ss_pred             EEeCCCeEE
Q 005656          394 AHVDQNGVY  402 (685)
Q Consensus       394 ~~~d~~~I~  402 (685)
                      +...+..+.
T Consensus       183 ~~~~~~~~~  191 (253)
T PF10647_consen  183 GRSAGGPVV  191 (253)
T ss_pred             eCCCCCcee
Confidence            876654333

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]

Probab=96.53  E-value=0.015  Score=50.17  Aligned_cols=113  Identities=17%  Similarity=0.241  Sum_probs=84.8

Q ss_pred             HHHHHhhccccCChHHHHHHHhcCC----------cchhhhhhccCCCCCCCCcccccCcccHHHHHHHHHHHHHHHhcC
Q 005656          552 FIQLLHSCAEMKNFSAFTDYIKSLS----------PSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEISCR  621 (685)
Q Consensus       552 ~~~~l~~~~~~~~~~~~~~~l~~~~----------~s~id~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~  621 (685)
                      +.+.|.-|.+.+--..++++++.+-          -..||..|..|..               ..+..+|+|+..+-...
T Consensus        13 y~~Al~LAl~L~~P~~ll~i~~~~~~~~~~~~~~g~~~l~~~i~~L~~---------------~~l~~LL~~ir~WNTNs   77 (141)
T PF08625_consen   13 YKEALRLALKLDHPFRLLKILKDLLETEEDEDSIGSEELDEVIKKLDD---------------EQLEKLLRFIRDWNTNS   77 (141)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHhcccccccchHHHHHHHHHhcCH---------------HHHHHHHHHHHHhhccc
Confidence            4444444444444344444444332          2457777777754               66889999999999999


Q ss_pred             CCHHHHHHHHHHHHHhhcc-ccccchHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhc
Q 005656          622 NNFEFIQAVIRLFLKIHGE-TVRCHTKLQDKARKLLEVQSAVWQKIDKMFQSARCVVSFL  680 (685)
Q Consensus       622 ~~~e~~~~~l~~~l~~h~~-~l~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  680 (685)
                      |+....|..|+.+|+.|.- .|.+.|.+.+.++.|....++-.+|++++.+ ...+|.|.
T Consensus        78 r~~~vAQ~vL~~il~~~~~~~L~~~~~~~~~le~lipYteRH~~Rl~~L~q-~syllDy~  136 (141)
T PF08625_consen   78 RTSHVAQRVLNAILKSHPPEELLKIPGLKEILEALIPYTERHFQRLDRLLQ-KSYLLDYT  136 (141)
T ss_pred             ccHHHHHHHHHHHHHhCCHHHHHccccHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHH
Confidence            9999999999999998764 4678899999999999999999999999854 45666664

This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.51  E-value=0.36  Score=45.90  Aligned_cols=140  Identities=20%  Similarity=0.186  Sum_probs=93.9

Q ss_pred             EEEEEcCCC-CEEEEEECCCe-EEEEECCCCceEEEeecC---CceeEEEEeecCCEEEEEeCC-----CeEEEEEcCCC
Q 005656          256 VGVACDSTN-TLMISAGYHGD-IKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVADD-----LVIRLFDVVAL  325 (685)
Q Consensus       256 ~~l~~~~~~-~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~d-----g~I~i~d~~~~  325 (685)
                      .+++++|.. .-++.+-.-|+ ..++|..+.+...++...   .-.-.-.|||||.+|+..-.|     |.|-|||.+.+
T Consensus        71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~  150 (366)
T COG3490          71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG  150 (366)
T ss_pred             CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence            356777754 34555555555 567888877665554432   334456799999999877554     68999999865


Q ss_pred             -eeEEEEecCCCCeEEEEEcCCCCEEEEEeC------------------CCcEEEEEcCCCceeeEEeec-----cceEE
Q 005656          326 -RMVRKFEGHTDRITDFCFSEDGKWLLSSGM------------------DGSLRIWDVILARQIDAIHVD-----VSITA  381 (685)
Q Consensus       326 -~~~~~~~~h~~~I~~l~~spdg~~l~s~s~------------------Dg~I~iwd~~~~~~i~~~~~~-----~~v~~  381 (685)
                       +.+.++..|.-....+.|.+||+.|+.+..                  .-++.+.|..+|.++.....+     -.+..
T Consensus       151 fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRH  230 (366)
T COG3490         151 FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRH  230 (366)
T ss_pred             cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceee
Confidence             567788888888889999999999987643                  112344455566665544333     23777


Q ss_pred             EEEcCCCCeEEEEE
Q 005656          382 LSLSPNMDVLATAH  395 (685)
Q Consensus       382 v~~spdg~~Lat~~  395 (685)
                      ++..+||..++.+-
T Consensus       231 ld~g~dgtvwfgcQ  244 (366)
T COG3490         231 LDIGRDGTVWFGCQ  244 (366)
T ss_pred             eeeCCCCcEEEEEE
Confidence            77777776655543

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.48  E-value=0.36  Score=52.90  Aligned_cols=143  Identities=14%  Similarity=0.098  Sum_probs=79.2

Q ss_pred             CCCEEEEEecCC-----cEEEEECCCCccccccccccccccCCCCcCEEEEEE-cCCCCEEEEEECCC------eEEEEE
Q 005656          213 CGNFAVLGTAGG-----WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC-DSTNTLMISAGYHG------DIKVWD  280 (685)
Q Consensus       213 ~g~~l~~g~~dg-----~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~~~l~s~s~dg------~i~iwd  280 (685)
                      +|...++|+.+|     .+..||..+.+....-.         ......+... .-+|...++||.++      ++..||
T Consensus       380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~---------m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YD  450 (571)
T KOG4441|consen  380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP---------MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYD  450 (571)
T ss_pred             CCEEEEEeccccccccccEEEecCCCCcccccCC---------CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEc
Confidence            567778888886     47888888776543321         1112222222 22567777777554      467888


Q ss_pred             CCCCceEEEeecC--CceeEEEEeecCCEEEEEeCCC-----eEEEEEcCCCeeEE--EEecCCCCeEEEEEcCCCCEEE
Q 005656          281 FKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADDL-----VIRLFDVVALRMVR--KFEGHTDRITDFCFSEDGKWLL  351 (685)
Q Consensus       281 ~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg-----~I~i~d~~~~~~~~--~~~~h~~~I~~l~~spdg~~l~  351 (685)
                      ..+......-...  ..-.. ...-++.+.++|+.|+     +|..||..+.+-..  ........+-...+  +++..+
T Consensus       451 P~t~~W~~~~~M~~~R~~~g-~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~  527 (571)
T KOG4441|consen  451 PETNTWTLIAPMNTRRSGFG-VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYA  527 (571)
T ss_pred             CCCCceeecCCcccccccce-EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEE
Confidence            7776543322221  11111 2233577888888776     37788887654322  22223333333333  677777


Q ss_pred             EEeCCC-----cEEEEEcCCC
Q 005656          352 SSGMDG-----SLRIWDVILA  367 (685)
Q Consensus       352 s~s~Dg-----~I~iwd~~~~  367 (685)
                      .|+.||     +|..||..+.
T Consensus       528 vGG~~~~~~l~~ve~ydp~~d  548 (571)
T KOG4441|consen  528 VGGFDGNNNLNTVECYDPETD  548 (571)
T ss_pred             EecccCccccceeEEcCCCCC
Confidence            888775     4666655443

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.41  E-value=0.12  Score=55.94  Aligned_cols=111  Identities=12%  Similarity=0.134  Sum_probs=77.3

Q ss_pred             CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEe-cCCCCeEEEEEc--CCCCEEEEEeCCCcEEEEEc------
Q 005656          294 CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE-GHTDRITDFCFS--EDGKWLLSSGMDGSLRIWDV------  364 (685)
Q Consensus       294 ~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~-~h~~~I~~l~~s--pdg~~l~s~s~Dg~I~iwd~------  364 (685)
                      ..+..+.-+.-++..++-+....+.|||...+.....-. ...+.|.++.|.  |||+.+++.|-.+.|.+|.-      
T Consensus        30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~  109 (631)
T PF12234_consen   30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT  109 (631)
T ss_pred             CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence            344445555555655555556689999999887543322 357889999985  68999999999999999853      


Q ss_pred             ---CCCceeeEEe----eccceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          365 ---ILARQIDAIH----VDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       365 ---~~~~~i~~~~----~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                         ++...+..+.    .+.+|.+..|.++|.+++.++   +.++|++..
T Consensus       110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG---Nqlfv~dk~  156 (631)
T PF12234_consen  110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG---NQLFVFDKW  156 (631)
T ss_pred             cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC---CEEEEECCC
Confidence               2233444443    234599999999998776663   589998743

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.40  E-value=0.64  Score=42.92  Aligned_cols=91  Identities=15%  Similarity=0.169  Sum_probs=65.1

Q ss_pred             EEEEEEcCCCCEEE-EEECCCeEEEEE--CCCCce-----EEEeec----C-CceeEEEEeecCCEEEEEeCCCeEEEEE
Q 005656          255 VVGVACDSTNTLMI-SAGYHGDIKVWD--FKGRDL-----KSRWEV----G-CSLVKIVYHRVNGLLATVADDLVIRLFD  321 (685)
Q Consensus       255 v~~l~~~~~~~~l~-s~s~dg~i~iwd--~~~~~~-----~~~~~~----~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d  321 (685)
                      -.+++|+.+.+.+. +-+.+-+|.-||  ..+|..     +..+..    . -..-.++...+|++.++.-..++|..+|
T Consensus       160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d  239 (310)
T KOG4499|consen  160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD  239 (310)
T ss_pred             CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence            35788987776554 445677787787  555532     222221    1 1223455566788888888899999999


Q ss_pred             cCCCeeEEEEecCCCCeEEEEEcC
Q 005656          322 VVALRMVRKFEGHTDRITDFCFSE  345 (685)
Q Consensus       322 ~~~~~~~~~~~~h~~~I~~l~~sp  345 (685)
                      ..+|+.+.++.-....|+++||--
T Consensus       240 p~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  240 PTTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             CCCCcEEEEEEcCCCceEEEEecC
Confidence            999999999998899999999953

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.26  E-value=1.2  Score=50.28  Aligned_cols=192  Identities=13%  Similarity=0.088  Sum_probs=114.4

Q ss_pred             CCEEEEEecCCcEEEEECCCCcccccccccccccc-CCCCcCEEEEEEc----------------CCCCEEEEEECCCeE
Q 005656          214 GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSN-YAHNGEVVGVACD----------------STNTLMISAGYHGDI  276 (685)
Q Consensus       214 g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~----------------~~~~~l~s~s~dg~i  276 (685)
                      +..+++++.++.|+-+|..+|+.+..+........ ..| ...+++++.                ..+..++.++.|+.+
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~-~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L  272 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQH-QTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL  272 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccc-ccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence            67888888899999999999998877643211100 011 011223331                134578888899999


Q ss_pred             EEEECCCCceEEEeecCCcee-------------EEEEee--cCCEEEEEeC----------CCeEEEEEcCCCeeEEEE
Q 005656          277 KVWDFKGRDLKSRWEVGCSLV-------------KIVYHR--VNGLLATVAD----------DLVIRLFDVVALRMVRKF  331 (685)
Q Consensus       277 ~iwd~~~~~~~~~~~~~~~i~-------------~~~~~~--~~~~l~~~~~----------dg~I~i~d~~~~~~~~~~  331 (685)
                      .-.|.++|+....+..++.+.             .+.-.|  .+..+++|+.          +|.|+-+|..+|+.+-.+
T Consensus       273 iALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       273 IALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            999999999987765433221             011111  1446666643          688999999999998877


Q ss_pred             ecC---------CC--------Ce-EEEEEcCCCCEEEEEe------------------CCCcEEEEEcCCCceeeEEee
Q 005656          332 EGH---------TD--------RI-TDFCFSEDGKWLLSSG------------------MDGSLRIWDVILARQIDAIHV  375 (685)
Q Consensus       332 ~~h---------~~--------~I-~~l~~spdg~~l~s~s------------------~Dg~I~iwd~~~~~~i~~~~~  375 (685)
                      ..-         .+        .+ ..+++.+....++.+.                  ..+.|.-.|..+|+..-.+..
T Consensus       353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~  432 (764)
T TIGR03074       353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT  432 (764)
T ss_pred             ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence            521         00        01 2234444433333221                  134577778889988776653


Q ss_pred             -ccc---------eEEEEEcC-CCC---eEEEEEeCCCeEEEEEcC
Q 005656          376 -DVS---------ITALSLSP-NMD---VLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       376 -~~~---------v~~v~~sp-dg~---~Lat~~~d~~~I~lW~~~  407 (685)
                       +..         ..-+.+.. +|+   .++.++.+| .+++.|-+
T Consensus       433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G-~~~vlDr~  477 (764)
T TIGR03074       433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQG-QIYVLDRR  477 (764)
T ss_pred             cCCccccccccCCceEEeeecCCCcEeeEEEEECCCC-EEEEEECC
Confidence             221         11222332 553   788888776 78888743

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.25  E-value=0.014  Score=39.43  Aligned_cols=31  Identities=19%  Similarity=0.461  Sum_probs=28.2

Q ss_pred             CCcEEEEEEccCCCCEEEEEeCCCcEEEEeCC
Q 005656            2 RGAVTALAFSSDGQPLLASGASSGVISIWNLE   33 (685)
Q Consensus         2 ~~~V~~l~fspdg~~~latg~~dg~I~vwd~~   33 (685)
                      ...|++++|+|... ++|.|+.+|.|.++.++
T Consensus        11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCC-EEEEEECCCeEEEEECC
Confidence            35799999999998 99999999999999883

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.23  E-value=1.4  Score=44.94  Aligned_cols=68  Identities=12%  Similarity=0.146  Sum_probs=41.8

Q ss_pred             CCCCeEEEEEcC-------CCCEEEEEeCCCcEEEEEcCCCceeeEE-e----eccceEEEEEcCCCCeEEEEEeCCCeE
Q 005656          334 HTDRITDFCFSE-------DGKWLLSSGMDGSLRIWDVILARQIDAI-H----VDVSITALSLSPNMDVLATAHVDQNGV  401 (685)
Q Consensus       334 h~~~I~~l~~sp-------dg~~l~s~s~Dg~I~iwd~~~~~~i~~~-~----~~~~v~~v~~spdg~~Lat~~~d~~~I  401 (685)
                      +...++.+.|..       .|.++++.-..+.|....+..+..+... .    ....+..+++.|||.+.++...+| .|
T Consensus       251 ~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G-~i  329 (331)
T PF07995_consen  251 PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDG-KI  329 (331)
T ss_dssp             TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTT-TE
T ss_pred             CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCC-eE
Confidence            335677787764       4556666666677888887655332221 1    122599999999999988887666 55


Q ss_pred             E
Q 005656          402 Y  402 (685)
Q Consensus       402 ~  402 (685)
                      +
T Consensus       330 y  330 (331)
T PF07995_consen  330 Y  330 (331)
T ss_dssp             E
T ss_pred             e
Confidence            4

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.21  E-value=2.1  Score=45.27  Aligned_cols=114  Identities=13%  Similarity=0.140  Sum_probs=69.6

Q ss_pred             cEEEEEEccCC----CCEEEEEeCCCcEEEEeCCC-----CeeeEEeeccccc----CeeEEEEeCCCcEEEEecCCCcE
Q 005656            4 AVTALAFSSDG----QPLLASGASSGVISIWNLEK-----RRLQSVIREAHDN----AIISLHFFANEPVLMSASADNSI   70 (685)
Q Consensus         4 ~V~~l~fspdg----~~~latg~~dg~I~vwd~~~-----~~~~~~~~~~h~~----~V~~l~~sp~~~~l~s~s~D~~v   70 (685)
                      .|..++|.|-+    ..+||+- ....|.||.+..     ++....-......    --..+.|+|....|+.-.....-
T Consensus        58 hV~GlsW~P~~~~~~paLLAVQ-HkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS  136 (671)
T PF15390_consen   58 HVHGLSWAPPCTADTPALLAVQ-HKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS  136 (671)
T ss_pred             eeeeeeecCcccCCCCceEEEe-ccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence            48899999864    2466665 467899998752     2222221101111    12467899999888776554444


Q ss_pred             EEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeC-CCceEEEEe
Q 005656           71 KMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ-DRAFRLFSV  121 (685)
Q Consensus        71 ~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~-dg~i~vwd~  121 (685)
                      .+.++.....  +....+ .-.+-|.|.+|.+||+.|+.+-. .=.-.+||-
T Consensus       137 V~~sV~~d~s--rVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  137 VLPSVHCDSS--RVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             EeeeeeeCCc--eEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence            4565554332  333333 45678999999999998876643 334566764

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=96.10  E-value=1.4  Score=42.25  Aligned_cols=274  Identities=11%  Similarity=0.068  Sum_probs=145.7

Q ss_pred             EEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccc-cCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCce
Q 005656            6 TALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHD-NAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRL   84 (685)
Q Consensus         6 ~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~-~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~   84 (685)
                      ..+.|+.+   +...+..+.-++|.|+.+......+..-.. +--+++..  .|++...+.-|.-+-+.|+...+ .+.+
T Consensus        90 ~Dv~vse~---yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdps-sP~l  163 (370)
T COG5276          90 ADVRVSEE---YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPS-SPQL  163 (370)
T ss_pred             heeEeccc---EEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCC-Ccee
Confidence            34455533   555566666799999987543333221112 33344444  48888888867677788887653 3344


Q ss_pred             eEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccc
Q 005656           85 LRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE  164 (685)
Q Consensus        85 ~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (685)
                      ..........-..++.+  |++-..+..|+-+.+-|+........+..-                               
T Consensus       164 agrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~-------------------------------  210 (370)
T COG5276         164 AGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSY-------------------------------  210 (370)
T ss_pred             eeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEE-------------------------------
Confidence            44444444445667776  557777888999999998765433322100                               


Q ss_pred             cCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccccc
Q 005656          165 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMS  244 (685)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~  244 (685)
                                                         .....+.++..+++-.+++....  -+.+.|.........+... 
T Consensus       211 -----------------------------------n~g~g~~sv~vsdnr~y~vvy~e--gvlivd~s~~ssp~~~gsy-  252 (370)
T COG5276         211 -----------------------------------NTGPGTYSVSVSDNRAYLVVYDE--GVLIVDVSGPSSPTVFGSY-  252 (370)
T ss_pred             -----------------------------------ecCCceEEEEecCCeeEEEEccc--ceEEEecCCCCCceEeecc-
Confidence                                               11225677777777666666544  3556666555443333110 


Q ss_pred             ccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc---eEEEeecCC-ceeEEEEeecCCEEEEEeCCCeEEEE
Q 005656          245 ERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD---LKSRWEVGC-SLVKIVYHRVNGLLATVADDLVIRLF  320 (685)
Q Consensus       245 ~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~---~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~I~i~  320 (685)
                         .......++.+.++  +++......+.-+.+-|+.+..   +...+...+ ....+..+  +.++..+..+ ...+.
T Consensus       253 ---et~~p~~~s~v~Vs--~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay--~~y~yiadkn-~g~vV  324 (370)
T COG5276         253 ---ETSNPVSISTVPVS--GEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--GNYNYIADKN-TGAVV  324 (370)
T ss_pred             ---ccCCcccccceecc--cceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe--cCeeEeccCC-ceEEE
Confidence               00112223333443  4455555555666666665432   111222221 22223222  4444444443 44455


Q ss_pred             EcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005656          321 DVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV  364 (685)
Q Consensus       321 d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~  364 (685)
                      |....+......+....+.+.+.+-+.+.+.+...++-+.||+.
T Consensus       325 ~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~  368 (370)
T COG5276         325 DASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY  368 (370)
T ss_pred             eCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence            55443333333333333444455556677888888999999985

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.09  E-value=0.094  Score=53.89  Aligned_cols=104  Identities=15%  Similarity=0.191  Sum_probs=69.6

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCc--EE-----EEecCCCcEEEEEecCCCCCCcee
Q 005656           13 DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP--VL-----MSASADNSIKMWIFDTTDGDPRLL   85 (685)
Q Consensus        13 dg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~--~l-----~s~s~D~~v~iWd~~~~~~~~~~~   85 (685)
                      +...++.+|.....++--|++.|+.+.... -|.. |+-+.+.|+.+  .|     +.|-.|+.|+-||....+..  .+
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk-~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~--kl  419 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWK-FEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN--KL  419 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEee-ccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc--ee
Confidence            334344456666678888999999999988 5555 88888888754  22     33556889999988754321  22


Q ss_pred             EecccCC----CCCeEEEEecCCCEEEEEeCCCceEEEEe
Q 005656           86 RFRSGHS----APPLCIRFYANGRHILSAGQDRAFRLFSV  121 (685)
Q Consensus        86 ~~~~~h~----~~v~~i~~~~~~~~l~s~s~dg~i~vwd~  121 (685)
                      ....+|.    ....|.+-..+| ++++||.+|.||+||-
T Consensus       420 ~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr  458 (644)
T KOG2395|consen  420 AVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR  458 (644)
T ss_pred             eeeeccccccccccceeeecCCc-eEEEeecCCcEEeehh
Confidence            2223332    234455544455 8999999999999985

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.08  E-value=0.27  Score=51.01  Aligned_cols=142  Identities=14%  Similarity=0.154  Sum_probs=80.2

Q ss_pred             cCEEEEEEcCCCCEEEEEE-----------CCC-eEEEEECCC--Cce--EEEeec-CCceeEEEEeecCCEEEEEeCCC
Q 005656          253 GEVVGVACDSTNTLMISAG-----------YHG-DIKVWDFKG--RDL--KSRWEV-GCSLVKIVYHRVNGLLATVADDL  315 (685)
Q Consensus       253 ~~v~~l~~~~~~~~l~s~s-----------~dg-~i~iwd~~~--~~~--~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg  315 (685)
                      .....|+|+++|+++++-.           ..+ .|.+++-.+  ++.  ...+.. -.....+++.+++  |++++...
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence            4457889999998776642           223 677776542  332  122222 2445788888888  44444443


Q ss_pred             eEEEEEcCC-------CeeE-EEEec----CCCCeEEEEEcCCCCEEEEEeCC-------------------CcEEEEEc
Q 005656          316 VIRLFDVVA-------LRMV-RKFEG----HTDRITDFCFSEDGKWLLSSGMD-------------------GSLRIWDV  364 (685)
Q Consensus       316 ~I~i~d~~~-------~~~~-~~~~~----h~~~I~~l~~spdg~~l~s~s~D-------------------g~I~iwd~  364 (685)
                      ..++.|...       .+.+ ..+..    +......++|.|||++.++-+..                   |.|.-++.
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p  171 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP  171 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence            333445432       1112 22322    23447889999999876655421                   33444554


Q ss_pred             CCCceeeEEee-ccceEEEEEcCCCCeEEEEEeC
Q 005656          365 ILARQIDAIHV-DVSITALSLSPNMDVLATAHVD  397 (685)
Q Consensus       365 ~~~~~i~~~~~-~~~v~~v~~spdg~~Lat~~~d  397 (685)
                      .+++ +..+.. ......++|+|+|+++++-+.+
T Consensus       172 dg~~-~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       172 DGGK-LRVVAHGFQNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             CCCe-EEEEecCcCCCccceECCCCCEEEEccCC
Confidence            4433 333332 2337899999999987765533

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=96.07  E-value=1.5  Score=42.47  Aligned_cols=165  Identities=15%  Similarity=0.196  Sum_probs=92.9

Q ss_pred             EEEEecCCcEEEEECCCCccc--cccccccccccCCCCcC-EEEEEEcC--CCCEEEEEE-CCCeEEEEECCCCceEE--
Q 005656          217 AVLGTAGGWIERFNLQSGISR--GSYLDMSERSNYAHNGE-VVGVACDS--TNTLMISAG-YHGDIKVWDFKGRDLKS--  288 (685)
Q Consensus       217 l~~g~~dg~i~~~d~~~~~~~--~~~~~~~~~~~~~h~~~-v~~l~~~~--~~~~l~s~s-~dg~i~iwd~~~~~~~~--  288 (685)
                      ++.++++|+|.-|+..-+...  ..+..    ......+. -.++++..  .+.+|+.+. ..++|.++|-.-.++..  
T Consensus       103 Fif~tEdGTisaW~p~v~~t~~~~~~~~----~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g  178 (336)
T TIGR03118       103 FLFVTEDGTLSGWAPALGTTRMTRAEIV----VDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPG  178 (336)
T ss_pred             EEEEeCCceEEeecCcCCcccccccEEE----EccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCC
Confidence            678899999999986544331  11000    00011122 34555543  345665554 67889999855332211  


Q ss_pred             Eeec-----C-Cc--ee------EEEE---eecCCEEEEEeCCCeEEEEEcCCCeeEEEEe--cCCCCeEEEEEcC----
Q 005656          289 RWEV-----G-CS--LV------KIVY---HRVNGLLATVADDLVIRLFDVVALRMVRKFE--GHTDRITDFCFSE----  345 (685)
Q Consensus       289 ~~~~-----~-~~--i~------~~~~---~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~--~h~~~I~~l~~sp----  345 (685)
                      .+..     . .+  |.      -+.|   .++.+.=+.|..-|.|-+||.. |+.++++.  +.-...+.|+..|    
T Consensus       179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG  257 (336)
T TIGR03118       179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFG  257 (336)
T ss_pred             CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhC
Confidence            0100     0 01  11      1111   1122222233345789999975 77777774  3344567777766    


Q ss_pred             --CCCEEEEEeCCCcEEEEEcCCCceeeEEeecc-------ceEEEEEcC
Q 005656          346 --DGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-------SITALSLSP  386 (685)
Q Consensus       346 --dg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~-------~v~~v~~sp  386 (685)
                        .|.+|+---.||+|..||..+|+.+..+....       ..+.++|..
T Consensus       258 ~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       258 SLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             CCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence              46777766689999999999999888776432       256666654

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.06  E-value=0.022  Score=38.44  Aligned_cols=35  Identities=9%  Similarity=0.183  Sum_probs=30.5

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCce
Q 005656          334 HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ  369 (685)
Q Consensus       334 h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~  369 (685)
                      ....|..++|+|...+||.++.+|.|.++.+ +++.
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            3456999999999999999999999999998 5544

>PRK13684 Ycf48-like protein; Provisional

Probab=95.97  E-value=2.2  Score=43.45  Aligned_cols=150  Identities=13%  Similarity=0.086  Sum_probs=83.8

Q ss_pred             CCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005656          202 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF  281 (685)
Q Consensus       202 ~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~  281 (685)
                      ...+..+.+.+++.++++|. .|.+..-.-..+..-....       ..-...++++.+.++++.++++ ..|.+++=..
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~-------~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~  242 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQ-------RNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDP  242 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEee-------CCCcccceeeeEcCCCCEEEEe-cCCEEEEccC
Confidence            45678888899887665554 4544432111111111111       1344678899999998876655 4576653333


Q ss_pred             CCCceEEEeec-----CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEe---cCCCCeEEEEEcCCCCEEEEE
Q 005656          282 KGRDLKSRWEV-----GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE---GHTDRITDFCFSEDGKWLLSS  353 (685)
Q Consensus       282 ~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~---~h~~~I~~l~~spdg~~l~s~  353 (685)
                      +.+..-.....     ...+..+.+.+++..++++ .+|.+. .....++.-....   +-....+.+.|..+++.++ .
T Consensus       243 d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~  319 (334)
T PRK13684        243 DDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-L  319 (334)
T ss_pred             CCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-E
Confidence            44332221111     1346788888877765554 566554 3444444433332   2234578888887776655 4


Q ss_pred             eCCCcEEEEE
Q 005656          354 GMDGSLRIWD  363 (685)
Q Consensus       354 s~Dg~I~iwd  363 (685)
                      +..|.|--|+
T Consensus       320 G~~G~il~~~  329 (334)
T PRK13684        320 GQRGVLLRYV  329 (334)
T ss_pred             CCCceEEEec
Confidence            5578887765

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.65  E-value=0.062  Score=60.12  Aligned_cols=151  Identities=7%  Similarity=-0.011  Sum_probs=96.3

Q ss_pred             CCCeEEEEEccCCCEEEEEecCC--cEEEEECCCCcccccccccc---ccccCCCCcCEEEEEEcCCC-CEEEEEECCCe
Q 005656          202 PTAVKACTISACGNFAVLGTAGG--WIERFNLQSGISRGSYLDMS---ERSNYAHNGEVVGVACDSTN-TLMISAGYHGD  275 (685)
Q Consensus       202 ~~~v~~~~~s~~g~~l~~g~~dg--~i~~~d~~~~~~~~~~~~~~---~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~  275 (685)
                      ...+..+...+|+...++.....  .|+.||+.+-.........+   ............++.|+|.- ...+.+..|+.
T Consensus       100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls  179 (1405)
T KOG3630|consen  100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS  179 (1405)
T ss_pred             cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence            34566667777777665544433  78899987643322111100   00111223445677888753 23566678899


Q ss_pred             EEEEECCCC-ceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEec----CCCCeEEEEEcCCCCEE
Q 005656          276 IKVWDFKGR-DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG----HTDRITDFCFSEDGKWL  350 (685)
Q Consensus       276 i~iwd~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~----h~~~I~~l~~spdg~~l  350 (685)
                      |++..+.-. .....+......++++|+|.|+.+++|-..|++.-|... ++..+.+.+    ....|.+++|-....|+
T Consensus       180 l~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~efl  258 (1405)
T KOG3630|consen  180 LRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFL  258 (1405)
T ss_pred             hhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEE
Confidence            988877633 233345566789999999999999999999999888643 343343332    24679999998877777


Q ss_pred             EEE
Q 005656          351 LSS  353 (685)
Q Consensus       351 ~s~  353 (685)
                      ++-
T Consensus       259 vvy  261 (1405)
T KOG3630|consen  259 VVY  261 (1405)
T ss_pred             EEe
Confidence            754

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.61  E-value=1.2  Score=48.16  Aligned_cols=53  Identities=17%  Similarity=0.237  Sum_probs=40.4

Q ss_pred             CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEe--cCCCCeEEEEEcCC
Q 005656          293 GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE--GHTDRITDFCFSED  346 (685)
Q Consensus       293 ~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~--~h~~~I~~l~~spd  346 (685)
                      ++.+..+..||+.++|+.-...|.|.+.+.+..+....+.  .|. +...++|..+
T Consensus       216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~-~p~qm~Wcgn  270 (829)
T KOG2280|consen  216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHD-PPKQMAWCGN  270 (829)
T ss_pred             CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCC-chHhceeecC
Confidence            4778899999999999999999999999988877776665  232 2235666443

>PHA03098 kelch-like protein; Provisional

Probab=95.55  E-value=0.59  Score=51.40  Aligned_cols=146  Identities=9%  Similarity=0.072  Sum_probs=72.7

Q ss_pred             CCCEEEEEecC-----CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC------CeEEEEEC
Q 005656          213 CGNFAVLGTAG-----GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH------GDIKVWDF  281 (685)
Q Consensus       213 ~g~~l~~g~~d-----g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d------g~i~iwd~  281 (685)
                      ++...++|+.+     ..+..||..++.....-. .+    .+...  .+++. -+++..+.||.+      ..+..||.
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~-lp----~~r~~--~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~  413 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPP-LI----FPRYN--PCVVN-VNNLIYVIGGISKNDELLKTVECFSL  413 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCC-cC----cCCcc--ceEEE-ECCEEEEECCcCCCCcccceEEEEeC
Confidence            56666777654     357788887765432211 00    01111  11222 246666767632      35888998


Q ss_pred             CCCceEEEeecCCc-eeEEEEeecCCEEEEEeCC--------CeEEEEEcCCCeeEEE--EecCCCCeEEEEEcCCCCEE
Q 005656          282 KGRDLKSRWEVGCS-LVKIVYHRVNGLLATVADD--------LVIRLFDVVALRMVRK--FEGHTDRITDFCFSEDGKWL  350 (685)
Q Consensus       282 ~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~d--------g~I~i~d~~~~~~~~~--~~~h~~~I~~l~~spdg~~l  350 (685)
                      .+.+-...-..+.+ ....+...++.+++.|+.+        ..+.+||..+.+-...  +.........+.+  +++.+
T Consensus       414 ~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iy  491 (534)
T PHA03098        414 NTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIY  491 (534)
T ss_pred             CCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEE
Confidence            77654332221111 1112233456666777643        2388899887643221  1111111122223  67777


Q ss_pred             EEEeCC-----CcEEEEEcCCCc
Q 005656          351 LSSGMD-----GSLRIWDVILAR  368 (685)
Q Consensus       351 ~s~s~D-----g~I~iwd~~~~~  368 (685)
                      +.|+.+     +.|.+||..+.+
T Consensus       492 v~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        492 VVGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             EEcCCcCCcccceeEEEeCCCCE
Confidence            777654     357777766553

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.54  E-value=0.13  Score=57.74  Aligned_cols=187  Identities=14%  Similarity=0.102  Sum_probs=110.4

Q ss_pred             EEEEccCCCEEEEEecCCcEEEEECCCCcccccc-------cccc-ccccC-CCCcCEEEEEEcCCCCEEEE--EECCCe
Q 005656          207 ACTISACGNFAVLGTAGGWIERFNLQSGISRGSY-------LDMS-ERSNY-AHNGEVVGVACDSTNTLMIS--AGYHGD  275 (685)
Q Consensus       207 ~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~-------~~~~-~~~~~-~h~~~v~~l~~~~~~~~l~s--~s~dg~  275 (685)
                      .++.++.-..++++...+.+.++-..+-.....-       .+.. ..... .....+..+...+|+...++  .+.+-.
T Consensus        46 ~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~  125 (1405)
T KOG3630|consen   46 NLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGEA  125 (1405)
T ss_pred             hhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCce
Confidence            4555665556666666666666544322111111       0000 00001 12235566666777654433  334447


Q ss_pred             EEEEECCCCceEE--------E----eecCCceeEEEEeecCC-EEEEEeCCCeEEEEEcCCCe-eEEEEecCCCCeEEE
Q 005656          276 IKVWDFKGRDLKS--------R----WEVGCSLVKIVYHRVNG-LLATVADDLVIRLFDVVALR-MVRKFEGHTDRITDF  341 (685)
Q Consensus       276 i~iwd~~~~~~~~--------~----~~~~~~i~~~~~~~~~~-~l~~~~~dg~I~i~d~~~~~-~~~~~~~h~~~I~~l  341 (685)
                      |..||+++-....        .    +.......++.|.|.=. ..+++..|+.|++.-+.... .+..+. -....+++
T Consensus       126 v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav  204 (1405)
T KOG3630|consen  126 VYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTAV  204 (1405)
T ss_pred             EEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-cccceeeE
Confidence            8999987532211        0    11124456777877543 56677788999888765432 222322 45668999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEee-----ccceEEEEEcCCCCeEEEEE
Q 005656          342 CFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV-----DVSITALSLSPNMDVLATAH  395 (685)
Q Consensus       342 ~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~-----~~~v~~v~~spdg~~Lat~~  395 (685)
                      +|+|.|+.++.|-..|++.-|. ++++....+..     ...|.+|+|-....+|++-+
T Consensus       205 ~WSprGKQl~iG~nnGt~vQy~-P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~  262 (1405)
T KOG3630|consen  205 LWSPRGKQLFIGRNNGTEVQYE-PSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG  262 (1405)
T ss_pred             EeccccceeeEecCCCeEEEee-cccceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence            9999999999999999998886 44554444432     24499999998888877643

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.50  E-value=1.4  Score=40.01  Aligned_cols=123  Identities=17%  Similarity=0.205  Sum_probs=77.0

Q ss_pred             EEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec---CC-
Q 005656          219 LGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV---GC-  294 (685)
Q Consensus       219 ~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~-  294 (685)
                      ....+|.-..||..+-+....+         ...+.-.+++.+  +..++.++...++++-|-++-....++..   +. 
T Consensus       106 LTw~egvaf~~d~~t~~~lg~~---------~y~GeGWgLt~d--~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~p  174 (262)
T COG3823         106 LTWKEGVAFKYDADTLEELGRF---------SYEGEGWGLTSD--DKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVP  174 (262)
T ss_pred             EEeccceeEEEChHHhhhhccc---------ccCCcceeeecC--CcceEeeCCceEEEecCHHHhhhcceEEEEECCee
Confidence            3446788889999888887766         445556677654  44466665556777777665443333221   22 


Q ss_pred             --ceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEe------------cCCCCeEEEEEcCCC-CEEEEE
Q 005656          295 --SLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE------------GHTDRITDFCFSEDG-KWLLSS  353 (685)
Q Consensus       295 --~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~------------~h~~~I~~l~~spdg-~~l~s~  353 (685)
                        .++-+.|- +|.+.|-.-.+..|...|..+|+.+..+.            .|....+.+++.|++ +++++|
T Consensus       175 v~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         175 VSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             cccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence              23333443 46666666666677777888888776554            244567889999987 555565

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=95.47  E-value=3.9  Score=42.63  Aligned_cols=175  Identities=10%  Similarity=0.128  Sum_probs=96.3

Q ss_pred             CEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCC-----------
Q 005656          215 NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG-----------  283 (685)
Q Consensus       215 ~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~-----------  283 (685)
                      .++.+-+.||.+.+|+-..-.....++.      .-..++   +++.+....+++++.+..+..|....           
T Consensus       146 ~~IcVQS~DG~L~~feqe~~~f~~~lp~------~llPgP---l~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~  216 (418)
T PF14727_consen  146 DFICVQSMDGSLSFFEQESFAFSRFLPD------FLLPGP---LCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQ  216 (418)
T ss_pred             eEEEEEecCceEEEEeCCcEEEEEEcCC------CCCCcC---eEEeecCCEEEEecCceeEEEecHHHhhhcccccccc
Confidence            6788899999999999776554444321      123333   56677777899998888888886521           


Q ss_pred             ---------C---ceEEEeecCCceeEEEEeec---CCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEE-E----
Q 005656          284 ---------R---DLKSRWEVGCSLVKIVYHRV---NGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC-F----  343 (685)
Q Consensus       284 ---------~---~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~-~----  343 (685)
                               +   .+..++..+..+..+.....   ...+++-+ ..++...+- +|......+ ......+++ |    
T Consensus       217 ~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~-~G~l~~~kr-Ld~~p~~~~~Y~~~~  293 (418)
T PF14727_consen  217 SGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKD-NGSLRFQKR-LDYNPSCFCPYRVPW  293 (418)
T ss_pred             ccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEe-cceEEEEcC-CCeEEEEEe-cCCceeeEEEEEeec
Confidence                     0   12234445566666655443   22333333 345666654 343332222 233333322 2    


Q ss_pred             --cCCC-CEEEEEeCCCcEEEEEcCCCceeeEEeeccceEEE---EEcCCCCeEEEEEeCCCeEEEE
Q 005656          344 --SEDG-KWLLSSGMDGSLRIWDVILARQIDAIHVDVSITAL---SLSPNMDVLATAHVDQNGVYLW  404 (685)
Q Consensus       344 --spdg-~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v---~~spdg~~Lat~~~d~~~I~lW  404 (685)
                        .|+. ..++.++.++++.||.  ..+++........+.++   .|..-...+++-+.+| .+.+-
T Consensus       294 ~~~~~~~~~llV~t~t~~LlVy~--d~~L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G-~L~v~  357 (418)
T PF14727_consen  294 YNEPSTRLNLLVGTHTGTLLVYE--DTTLVWSAQLPHVPVALSVANFNGLKGLIVSLSDEG-QLSVS  357 (418)
T ss_pred             ccCCCCceEEEEEecCCeEEEEe--CCeEEEecCCCCCCEEEEecccCCCCceEEEEcCCC-cEEEE
Confidence              1221 2478888999999986  33344433333332233   3333344566666665 66664

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.40  E-value=3.2  Score=41.24  Aligned_cols=145  Identities=10%  Similarity=0.062  Sum_probs=78.2

Q ss_pred             CCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCC-ceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEE-cCCCee
Q 005656          250 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFD-VVALRM  327 (685)
Q Consensus       250 ~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d-~~~~~~  327 (685)
                      .-.+.+..+..+++|+++++++....+.-||--.. -..........+..|.|.|++.+.+++ ..|.|+.=+ ....+.
T Consensus       142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~  220 (302)
T PF14870_consen  142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGET  220 (302)
T ss_dssp             S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEE
T ss_pred             CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccc
Confidence            44577889999999998888876556667875432 223333345889999999998876655 788888877 222222


Q ss_pred             EEE----EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEee----ccceEEEEEcCCCCeEEEEEeCC
Q 005656          328 VRK----FEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV----DVSITALSLSPNMDVLATAHVDQ  398 (685)
Q Consensus       328 ~~~----~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~----~~~v~~v~~spdg~~Lat~~~d~  398 (685)
                      ...    +..-.-.+.+++|.+++...++|+ .|.+ +.....|+.-...+.    +.....+.|.++.+-++.|. +|
T Consensus       221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~-~G  296 (302)
T PF14870_consen  221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQ-DG  296 (302)
T ss_dssp             E---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-S-TT
T ss_pred             cccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEECC-Cc
Confidence            211    111222388999999887777665 4544 345566665544432    44588899987766666664 55

>PHA03098 kelch-like protein; Provisional

Probab=95.38  E-value=0.49  Score=52.05  Aligned_cols=149  Identities=7%  Similarity=0.032  Sum_probs=74.7

Q ss_pred             ccCCCEEEEEecCC------cEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC-----CeEEEE
Q 005656          211 SACGNFAVLGTAGG------WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH-----GDIKVW  279 (685)
Q Consensus       211 s~~g~~l~~g~~dg------~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d-----g~i~iw  279 (685)
                      ..++..+++|+.++      .+..||..++.....- ..+     ........+.+  +++.++.||.+     ..+..|
T Consensus       292 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~-~~~-----~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~y  363 (534)
T PHA03098        292 VLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVP-ELI-----YPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESW  363 (534)
T ss_pred             EECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECC-CCC-----cccccceEEEE--CCEEEEEeCCCCCEecceEEEE
Confidence            34556667776542      5788998877653221 100     11111122222  56677777755     347788


Q ss_pred             ECCCCceEEEeecCCce-eEEEEeecCCEEEEEeCC------CeEEEEEcCCCeeEE--EEecCCCCeEEEEEcCCCCEE
Q 005656          280 DFKGRDLKSRWEVGCSL-VKIVYHRVNGLLATVADD------LVIRLFDVVALRMVR--KFEGHTDRITDFCFSEDGKWL  350 (685)
Q Consensus       280 d~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~d------g~I~i~d~~~~~~~~--~~~~h~~~I~~l~~spdg~~l  350 (685)
                      |..+.+-...-..+.+. ...+..-++++++.|+.+      ..+..||..+.+-..  .+........  +...+++..
T Consensus       364 d~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~--~~~~~~~iy  441 (534)
T PHA03098        364 KPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGC--AIYHDGKIY  441 (534)
T ss_pred             cCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCce--EEEECCEEE
Confidence            88766543322211111 111223356677777632      468889987654322  1111111111  222356666


Q ss_pred             EEEeCCC--------cEEEEEcCCCce
Q 005656          351 LSSGMDG--------SLRIWDVILARQ  369 (685)
Q Consensus       351 ~s~s~Dg--------~I~iwd~~~~~~  369 (685)
                      +.||.++        .+.+||..+++-
T Consensus       442 v~GG~~~~~~~~~~~~v~~yd~~~~~W  468 (534)
T PHA03098        442 VIGGISYIDNIKVYNIVESYNPVTNKW  468 (534)
T ss_pred             EECCccCCCCCcccceEEEecCCCCce
Confidence            6776432        388888876543

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.37  E-value=0.39  Score=52.23  Aligned_cols=105  Identities=17%  Similarity=0.303  Sum_probs=70.7

Q ss_pred             EEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec--CCceeEEEEe--ecCCEEEEEeCCCeEEEEEcC---------C
Q 005656          258 VACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV--GCSLVKIVYH--RVNGLLATVADDLVIRLFDVV---------A  324 (685)
Q Consensus       258 l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~i~~~~~~--~~~~~l~~~~~dg~I~i~d~~---------~  324 (685)
                      +.-+.-++..++.+....+.|||.+.+.+...-..  ...|.++.|.  |+++.+.+.+-.+.|.+|--.         +
T Consensus        35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~  114 (631)
T PF12234_consen   35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPS  114 (631)
T ss_pred             EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcc
Confidence            33344455444444556799999998886665544  6889999886  577777777777888887532         2


Q ss_pred             CeeEEEE--ecCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005656          325 LRMVRKF--EGHT-DRITDFCFSEDGKWLLSSGMDGSLRIWDV  364 (685)
Q Consensus       325 ~~~~~~~--~~h~-~~I~~l~~spdg~~l~s~s~Dg~I~iwd~  364 (685)
                      ...++.+  ..|+ .+|.+..|.++|..++.++  +.+.|+|-
T Consensus       115 w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  115 WAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             cceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence            2334443  3444 5799999999997665544  56888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.35  E-value=0.84  Score=50.19  Aligned_cols=150  Identities=12%  Similarity=0.187  Sum_probs=94.3

Q ss_pred             CCEEEEEecCCcEEEEECCCCcccc------ccccccccc--------cCCCCcCEEEEEEcC--CCCEEEEEECCCeEE
Q 005656          214 GNFAVLGTAGGWIERFNLQSGISRG------SYLDMSERS--------NYAHNGEVVGVACDS--TNTLMISAGYHGDIK  277 (685)
Q Consensus       214 g~~l~~g~~dg~i~~~d~~~~~~~~------~~~~~~~~~--------~~~h~~~v~~l~~~~--~~~~l~s~s~dg~i~  277 (685)
                      ++++++++ .+.|.+|++..-....      .+...+...        .......|+-+.+..  ....|+.|..||.|.
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            67777765 7789999986533311      110000000        000122355555443  446788999999999


Q ss_pred             EEECCC-------C-------------ceEEEeecCCceeEEEEe--ecCCEEEEEeCCCeEEEEEcCCC--ee-EEEEe
Q 005656          278 VWDFKG-------R-------------DLKSRWEVGCSLVKIVYH--RVNGLLATVADDLVIRLFDVVAL--RM-VRKFE  332 (685)
Q Consensus       278 iwd~~~-------~-------------~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~I~i~d~~~~--~~-~~~~~  332 (685)
                      +|.+++       .             ++...+..+..+..++++  ...++||+++....|.||-....  +. ...-.
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~  207 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSH  207 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccc
Confidence            997531       0             122344455788899998  78889999999888888765432  11 11111


Q ss_pred             cCCCCeEEEEEcCCC---C---EEEEEeCCCcEEEEEc
Q 005656          333 GHTDRITDFCFSEDG---K---WLLSSGMDGSLRIWDV  364 (685)
Q Consensus       333 ~h~~~I~~l~~spdg---~---~l~s~s~Dg~I~iwd~  364 (685)
                      .|...|.+|+|-++.   .   +|++++-.|.+-+|++
T Consensus       208 ~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  208 QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            256679999997643   2   7888999999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.27  E-value=1.8  Score=47.04  Aligned_cols=39  Identities=18%  Similarity=0.130  Sum_probs=33.3

Q ss_pred             CCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656          202 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  240 (685)
Q Consensus       202 ~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~  240 (685)
                      .+.+..+.+||+.++++.-+..|.|.+.++...+....+
T Consensus       216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~  254 (829)
T KOG2280|consen  216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEF  254 (829)
T ss_pred             CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhcc
Confidence            467889999999999999999999999988776665554

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.26  E-value=3.3  Score=42.31  Aligned_cols=74  Identities=12%  Similarity=0.171  Sum_probs=48.8

Q ss_pred             eEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCc
Q 005656           50 ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ  125 (685)
Q Consensus        50 ~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~  125 (685)
                      +.+-|....+.|+ +-..|.+.=|.+...+ .-.++..-....++|.+|.|++|.+.++.--.+.+|.+++...++
T Consensus        26 ngvFfDDaNkqlf-avrSggatgvvvkgpn-dDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~   99 (657)
T KOG2377|consen   26 NGVFFDDANKQLF-AVRSGGATGVVVKGPN-DDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDN   99 (657)
T ss_pred             cceeeccCcceEE-EEecCCeeEEEEeCCC-CCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCc
Confidence            3444443333333 3344566777665543 223344445567799999999999999999999999998874443

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=95.17  E-value=3  Score=39.69  Aligned_cols=239  Identities=12%  Similarity=0.054  Sum_probs=134.4

Q ss_pred             EEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCcee
Q 005656            6 TALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL   85 (685)
Q Consensus         6 ~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~   85 (685)
                      ..++-+|||. +-.++...|.|---|-.+|+....-. +....-..+..-|||..-++-+.. .|.-.  +......+..
T Consensus        65 ~dvapapdG~-VWft~qg~gaiGhLdP~tGev~~ypL-g~Ga~Phgiv~gpdg~~Witd~~~-aI~R~--dpkt~evt~f  139 (353)
T COG4257          65 FDVAPAPDGA-VWFTAQGTGAIGHLDPATGEVETYPL-GSGASPHGIVVGPDGSAWITDTGL-AIGRL--DPKTLEVTRF  139 (353)
T ss_pred             cccccCCCCc-eEEecCccccceecCCCCCceEEEec-CCCCCCceEEECCCCCeeEecCcc-eeEEe--cCcccceEEe
Confidence            3456667776 66677666777777777777665544 555566677777877765554333 22222  2221111111


Q ss_pred             Ee-cccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccc
Q 005656           86 RF-RSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE  164 (685)
Q Consensus        86 ~~-~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (685)
                      .. ...-........|.+.|+.-+++.. |.---.|.                                           
T Consensus       140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdP-------------------------------------------  175 (353)
T COG4257         140 PLPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDP-------------------------------------------  175 (353)
T ss_pred             ecccccCCCcccceeeCCCccEEEeecc-ccceecCc-------------------------------------------
Confidence            11 1222345667788888877776642 10000000                                           


Q ss_pred             cCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccccc
Q 005656          165 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMS  244 (685)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~  244 (685)
                                 ....+.+|+.              ........+|..|+|..-++...+..|...|..++.. ..+..  
T Consensus       176 -----------a~~~i~vfpa--------------PqG~gpyGi~atpdGsvwyaslagnaiaridp~~~~a-ev~p~--  227 (353)
T COG4257         176 -----------ARNVISVFPA--------------PQGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHA-EVVPQ--  227 (353)
T ss_pred             -----------ccCceeeecc--------------CCCCCCcceEECCCCcEEEEeccccceEEcccccCCc-ceecC--
Confidence                       0112222222              2244567889999999999988889999999888733 22211  


Q ss_pred             ccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC---CceeEEEEeecCCEEEEEeCCCeEEEEE
Q 005656          245 ERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVADDLVIRLFD  321 (685)
Q Consensus       245 ~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~dg~I~i~d  321 (685)
                         .......-+.+-.+|.++.-+|....+.+..+|-.... -..+...   ..-.++.....++.-.+-...|.|.-+|
T Consensus       228 ---P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypLPgs~arpys~rVD~~grVW~sea~agai~rfd  303 (353)
T COG4257         228 ---PNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFD  303 (353)
T ss_pred             ---CCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeCCCCCCCcceeeeccCCcEEeeccccCceeecC
Confidence               11223345566678888888887777888888866544 2233322   3345555555555444444445666666


Q ss_pred             cCCC
Q 005656          322 VVAL  325 (685)
Q Consensus       322 ~~~~  325 (685)
                      .++.
T Consensus       304 peta  307 (353)
T COG4257         304 PETA  307 (353)
T ss_pred             cccc
Confidence            5544

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.11  E-value=0.014  Score=63.20  Aligned_cols=153  Identities=18%  Similarity=0.221  Sum_probs=90.9

Q ss_pred             CCCcCEEEEEEcCCC-CEEEEEECCCeEEEEECC--CCceEEEeec------CCceeEEEEe---ecCCEEEEEeCCCeE
Q 005656          250 AHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFK--GRDLKSRWEV------GCSLVKIVYH---RVNGLLATVADDLVI  317 (685)
Q Consensus       250 ~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~--~~~~~~~~~~------~~~i~~~~~~---~~~~~l~~~~~dg~I  317 (685)
                      +..+.|-.+.|-... ..+.  -.-|.+.+||+.  .|++...+..      +..+.-+.|+   ++..++.++..++.|
T Consensus       130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i  207 (1283)
T KOG1916|consen  130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEI  207 (1283)
T ss_pred             cCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCce
Confidence            566777777774321 1111  223678889876  4443322221      2333444444   456688888888999


Q ss_pred             EEEEcCCCeeEEEEecCCCCeEEEE-----------EcCCCCEEEEEeCCCcEEEEEcC-CC----ceeeEEeeccc---
Q 005656          318 RLFDVVALRMVRKFEGHTDRITDFC-----------FSEDGKWLLSSGMDGSLRIWDVI-LA----RQIDAIHVDVS---  378 (685)
Q Consensus       318 ~i~d~~~~~~~~~~~~h~~~I~~l~-----------~spdg~~l~s~s~Dg~I~iwd~~-~~----~~i~~~~~~~~---  378 (685)
                      ++..+.+... ..+++|...+++++           .||||..+++++.||.+++|.+. +|    +++..++.|..   
T Consensus       208 ~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~  286 (1283)
T KOG1916|consen  208 RLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPR  286 (1283)
T ss_pred             eEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCc
Confidence            8887765432 33456877666554           58999999999999999999764 23    23333443332   


Q ss_pred             eEEEEEcCC---------CCeEEEEEeCCCeEEEEEc
Q 005656          379 ITALSLSPN---------MDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       379 v~~v~~spd---------g~~Lat~~~d~~~I~lW~~  406 (685)
                      |-.+ |+..         -.++++++.-+..+++|.-
T Consensus       287 vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~  322 (1283)
T KOG1916|consen  287 VCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAE  322 (1283)
T ss_pred             eeee-eccccccCCccceeEEEEecccCCcceeEeec
Confidence            2222 3321         1356666666668999963

>PRK10115 protease 2; Provisional

Probab=95.09  E-value=7.7  Score=43.88  Aligned_cols=191  Identities=11%  Similarity=-0.017  Sum_probs=100.7

Q ss_pred             CCeEEEEEccCCCEEEEEecC-----CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC----
Q 005656          203 TAVKACTISACGNFAVLGTAG-----GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH----  273 (685)
Q Consensus       203 ~~v~~~~~s~~g~~l~~g~~d-----g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d----  273 (685)
                      ..+..+.++|+|++++.+.+.     ..|++.|+.+|.......        ..  .-..++|.++++.|+.+..+    
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i--------~~--~~~~~~w~~D~~~~~y~~~~~~~~  196 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL--------DN--VEPSFVWANDSWTFYYVRKHPVTL  196 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc--------cC--cceEEEEeeCCCEEEEEEecCCCC
Confidence            346778899999999886543     368899998885432211        11  11469999999877665432    


Q ss_pred             --CeEEEEECCCC--ceEEEeecC-Ccee-EEEEeecCCEEEEEeC---CCeEEEEEcC--CCeeEEEEecCCCCeEEEE
Q 005656          274 --GDIKVWDFKGR--DLKSRWEVG-CSLV-KIVYHRVNGLLATVAD---DLVIRLFDVV--ALRMVRKFEGHTDRITDFC  342 (685)
Q Consensus       274 --g~i~iwd~~~~--~~~~~~~~~-~~i~-~~~~~~~~~~l~~~~~---dg~I~i~d~~--~~~~~~~~~~h~~~I~~l~  342 (685)
                        ..|+.+++.++  +-...+... .... ....+.+++++++.+.   ++.+.+|+..  ++.....+..-.+....+.
T Consensus       197 ~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  276 (686)
T PRK10115        197 LPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD  276 (686)
T ss_pred             CCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE
Confidence              36788888877  333333322 2222 3333447776655543   3578888843  3432222222222223222


Q ss_pred             EcCCCCEEEEEeCC-Cc--EEEEEcC-CCceeeEEeec--cceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656          343 FSEDGKWLLSSGMD-GS--LRIWDVI-LARQIDAIHVD--VSITALSLSPNMDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       343 ~spdg~~l~s~s~D-g~--I~iwd~~-~~~~i~~~~~~--~~v~~v~~spdg~~Lat~~~d~~~I~lW~~  406 (685)
                       +..+.+.+....+ ..  |...++. .++....+...  ..+..+.++  +++|+....+++.-+++..
T Consensus       277 -~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g~~~l~~~  343 (686)
T PRK10115        277 -HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQRGLTSLRQI  343 (686)
T ss_pred             -eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEeCCEEEEEEE
Confidence             3233333333222 23  4333444 23322333332  248888887  4455555555446566543

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.92  E-value=4.4  Score=40.24  Aligned_cols=149  Identities=15%  Similarity=0.190  Sum_probs=79.3

Q ss_pred             CCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005656          202 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF  281 (685)
Q Consensus       202 ~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~  281 (685)
                      ...+..+..+++|.+++++.......-|+.-...-....        ......|..+.|.|++...+.+ ..|.|++=+.
T Consensus       144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~--------r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~  214 (302)
T PF14870_consen  144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHN--------RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDD  214 (302)
T ss_dssp             ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE----------SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-
T ss_pred             cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEc--------cCccceehhceecCCCCEEEEe-CCcEEEEccC
Confidence            456788888999999999877766667765432221111        1445789999999998765544 7888888772


Q ss_pred             C-CCceEEE--e---ecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEe---cCCCCeEEEEEcCCCCEEEE
Q 005656          282 K-GRDLKSR--W---EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE---GHTDRITDFCFSEDGKWLLS  352 (685)
Q Consensus       282 ~-~~~~~~~--~---~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~---~h~~~I~~l~~spdg~~l~s  352 (685)
                      . ....-..  .   .....+..++|.+++...++|+. |.+ +...+.|+.-..-+   .-...++.+.|.++.+-++ 
T Consensus       215 ~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-  291 (302)
T PF14870_consen  215 PDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-  291 (302)
T ss_dssp             TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-
T ss_pred             CCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE-
Confidence            2 1111111  1   11245889999998877776664 433 44555565544443   2345688899976654444 


Q ss_pred             EeCCCcEEEE
Q 005656          353 SGMDGSLRIW  362 (685)
Q Consensus       353 ~s~Dg~I~iw  362 (685)
                      .+.+|.|.-|
T Consensus       292 lG~~G~ll~~  301 (302)
T PF14870_consen  292 LGQDGVLLRY  301 (302)
T ss_dssp             E-STTEEEEE
T ss_pred             ECCCcEEEEe
Confidence            4567876544

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=94.91  E-value=4.4  Score=40.19  Aligned_cols=137  Identities=17%  Similarity=0.295  Sum_probs=85.6

Q ss_pred             eEEEEECCCCceEEEeecC-------CceeEEEEeecC-----CEEEEEeC-CCeEEEEEcCCCeeEEEEecCC------
Q 005656          275 DIKVWDFKGRDLKSRWEVG-------CSLVKIVYHRVN-----GLLATVAD-DLVIRLFDVVALRMVRKFEGHT------  335 (685)
Q Consensus       275 ~i~iwd~~~~~~~~~~~~~-------~~i~~~~~~~~~-----~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~------  335 (685)
                      .|.+||+.+.+.++++..+       +.+..+.+....     .+++.+.. .+.|.|||+.+++..+.+..+.      
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence            6888999999988887654       456677777632     34444433 4689999999988766654321      


Q ss_pred             -------------CCeEEEEEcC---CCCEEEEEeCCCcEEEEEcCCCc--------------eeeEEee-ccceEEEEE
Q 005656          336 -------------DRITDFCFSE---DGKWLLSSGMDGSLRIWDVILAR--------------QIDAIHV-DVSITALSL  384 (685)
Q Consensus       336 -------------~~I~~l~~sp---dg~~l~s~s~Dg~I~iwd~~~~~--------------~i~~~~~-~~~v~~v~~  384 (685)
                                   ..+..++.+|   +|++|.-....+ -++|.+++..              .+..+.. ......+++
T Consensus       115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~  193 (287)
T PF03022_consen  115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI  193 (287)
T ss_dssp             EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred             cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence                         2366777766   777888776544 3455554321              1222222 234678889


Q ss_pred             cCCCCeEEEEEeCCCeEEEEEcCCCcCCC
Q 005656          385 SPNMDVLATAHVDQNGVYLWVNRCMFSGD  413 (685)
Q Consensus       385 spdg~~Lat~~~d~~~I~lW~~~~~~~~~  413 (685)
                      +++|.+.++--.. +.|..|+....|.+.
T Consensus       194 D~~G~ly~~~~~~-~aI~~w~~~~~~~~~  221 (287)
T PF03022_consen  194 DPNGNLYFTDVEQ-NAIGCWDPDGPYTPE  221 (287)
T ss_dssp             ETTTEEEEEECCC-TEEEEEETTTSB-GC
T ss_pred             CCCCcEEEecCCC-CeEEEEeCCCCcCcc
Confidence            9988766666655 599999988777654

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=94.69  E-value=7.7  Score=42.27  Aligned_cols=266  Identities=9%  Similarity=0.120  Sum_probs=120.0

Q ss_pred             eCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccC-CCCCeEEEEecCC-CEEEEEeCCCceEEEEeecCceeeEech
Q 005656           55 FANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGH-SAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQDQQSRELSQ  132 (685)
Q Consensus        55 sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h-~~~v~~i~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~  132 (685)
                      ..++..++-+..+|.+..-.+.....  ......-+. .....++.+..+| .+|+.|+.-|.=.++.+.....      
T Consensus       219 ~~~~~~~lL~~e~G~l~~l~l~~~~~--~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l------  290 (504)
T PF10433_consen  219 DKDGDRILLQDEDGDLYLLTLDNDGG--SISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNL------  290 (504)
T ss_dssp             STTSSEEEEEETTSEEEEEEEEEEEE--EEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESE------
T ss_pred             cCCCCEEEEEeCCCeEEEEEEEECCC--eEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCc------
Confidence            34566788888999998887766432  111111222 4556777777665 4777777655444444432111      


Q ss_pred             hhHHHHHhhccccccccccCceeeeecccccccCCc------ceEEEEcC--CceEEEEEcCccccCceeecCCCCCCCC
Q 005656          133 RHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC------NVVTCHMD--TAQAYVWRLQNFVLGEHILRPCPENPTA  204 (685)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~  204 (685)
                                .....-..+.|+..+...........      .+++|...  .+.+++.+..-...+.............
T Consensus       291 ----------~~~~~~~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~  360 (504)
T PF10433_consen  291 ----------EVLDSLPNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTG  360 (504)
T ss_dssp             ----------EEEEEE----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEE
T ss_pred             ----------EEEEeccCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceE
Confidence                      11112234567777666544333322      66666553  4455555432211100111100011223


Q ss_pred             eEEEEEcc-CCCEEEEEecCCcEEEEECC---CCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 005656          205 VKACTISA-CGNFAVLGTAGGWIERFNLQ---SGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD  280 (685)
Q Consensus       205 v~~~~~s~-~g~~l~~g~~dg~i~~~d~~---~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd  280 (685)
                      ++.+.... ++.++++...+. -.++.+.   .......... .  ........+.+-.+.  +..++=.. ...|++.+
T Consensus       361 iW~l~~~~~~~~~lv~S~~~~-T~vl~~~~~d~~e~~~e~~~-~--~f~~~~~Tl~~~~~~--~~~ivQVt-~~~i~l~~  433 (504)
T PF10433_consen  361 IWTLKLSSSDHSYLVLSFPNE-TRVLQISEGDDGEEVEEVEE-D--GFDTDEPTLAAGNVG--DGRIVQVT-PKGIRLID  433 (504)
T ss_dssp             EEEE-SSSSSBSEEEEEESSE-EEEEEES----SSEEEEE------TS-SSS-EEEEEEET--TTEEEEEE-SSEEEEEE
T ss_pred             EEEeeecCCCceEEEEEcCCc-eEEEEEecccCCcchhhhhh-c--cCCCCCCCeEEEEcC--CCeEEEEe-cCeEEEEE
Confidence            33333322 245666666554 4445443   1222111100 0  000111222222222  33444443 34588888


Q ss_pred             CCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEe-c----CCCCeEEEEEcC
Q 005656          281 FKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE-G----HTDRITDFCFSE  345 (685)
Q Consensus       281 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~-~----h~~~I~~l~~sp  345 (685)
                      ...++....+..+....-++.+-++.+++++..++.+..+.+.......... .    ....|.|+..+|
T Consensus       434 ~~~~~~~~~w~~~~~~~I~~a~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p  503 (504)
T PF10433_consen  434 LEDGKLTQEWKPPAGSIIVAASINDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP  503 (504)
T ss_dssp             SSSTSEEEEEE-TTS---SEEEESSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred             CCCCeEEEEEeCCCCCeEEEEEECCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence            8877777776554333333333446788888888999999988776643332 1    467788888776

...

>PHA02790 Kelch-like protein; Provisional

Probab=94.67  E-value=1.6  Score=47.18  Aligned_cols=59  Identities=14%  Similarity=0.063  Sum_probs=30.4

Q ss_pred             EEEEEeCCC-----cEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCC--cEEEEEec
Q 005656           17 LLASGASSG-----VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADN--SIKMWIFD   76 (685)
Q Consensus        17 ~latg~~dg-----~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~--~v~iWd~~   76 (685)
                      ++++|+.++     .+..||..+++....-.-.....-.+++ .-++.+.+.||.++  ++..|+..
T Consensus       274 lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~  339 (480)
T PHA02790        274 VYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHG  339 (480)
T ss_pred             EEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECC
Confidence            677787543     4677888776543221101111111222 24677777777643  46666543

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=94.65  E-value=4.7  Score=39.27  Aligned_cols=235  Identities=12%  Similarity=0.131  Sum_probs=127.5

Q ss_pred             CeeEEEEeCCCcEEEEecCCCcEEEEEecCCC--CCC-ceeEeccc-----CCCCCeEEEEecCCCE------------E
Q 005656           48 AIISLHFFANEPVLMSASADNSIKMWIFDTTD--GDP-RLLRFRSG-----HSAPPLCIRFYANGRH------------I  107 (685)
Q Consensus        48 ~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~--~~~-~~~~~~~~-----h~~~v~~i~~~~~~~~------------l  107 (685)
                      .-..|+|+|.+.+-++...-+...+||.+...  +.+ .++-.+..     ....++.+.|+....+            +
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            35789999999988888888899999886221  111 22233221     2346888888754333            5


Q ss_pred             EEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCc
Q 005656          108 LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN  187 (685)
Q Consensus       108 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  187 (685)
                      +.++.||+|.-|...-+.....-                                                .+.+.+-  
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~------------------------------------------------~~~~~d~--  133 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTR------------------------------------------------AEIVVDA--  133 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccc------------------------------------------------cEEEEcc--
Confidence            66777888888864322110000                                                0000000  


Q ss_pred             cccCceeecCCCCCCCC-eEEEEE--ccCCCEEEEE-ecCCcEEEEECCCCccc--cccccccccccC--------CCCc
Q 005656          188 FVLGEHILRPCPENPTA-VKACTI--SACGNFAVLG-TAGGWIERFNLQSGISR--GSYLDMSERSNY--------AHNG  253 (685)
Q Consensus       188 ~~~~~~~~~~~~~~~~~-v~~~~~--s~~g~~l~~g-~~dg~i~~~d~~~~~~~--~~~~~~~~~~~~--------~h~~  253 (685)
                                  ..... -+.+++  ...+++|+.. -.+++|.+||-.-....  ..+.+......+        +..-
T Consensus       134 ------------s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~l  201 (336)
T TIGR03118       134 ------------SQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTL  201 (336)
T ss_pred             ------------CCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeE
Confidence                        00111 123333  3345666554 45788999975533221  112111100000        1111


Q ss_pred             CEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC---CceeEEEEee------cCCEEEEEeCCCeEEEEEcCC
Q 005656          254 EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHR------VNGLLATVADDLVIRLFDVVA  324 (685)
Q Consensus       254 ~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~~~------~~~~l~~~~~dg~I~i~d~~~  324 (685)
                      .|+-..-+++...=+.+..-|.|-+||.. +.+++.+...   .....++..|      .+.+|+---.||+|..||..+
T Consensus       202 yVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~s  280 (336)
T TIGR03118       202 YVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQS  280 (336)
T ss_pred             EEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCC
Confidence            12222223333333334445789999975 5666666544   2334455544      366787778899999999999


Q ss_pred             CeeEEEEecCCCC------eEEEEEcC
Q 005656          325 LRMVRKFEGHTDR------ITDFCFSE  345 (685)
Q Consensus       325 ~~~~~~~~~h~~~------I~~l~~sp  345 (685)
                      ++.+..+....+.      ++.++|-.
T Consensus       281 G~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       281 GAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             CceeeeecCCCCCeEEecCeEEeeeCC
Confidence            9988888765442      45666654

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.65  E-value=9.8  Score=42.91  Aligned_cols=29  Identities=10%  Similarity=0.086  Sum_probs=22.2

Q ss_pred             CCCCeEEEEecCCCEEEEEeCCCceEEEEe
Q 005656           92 SAPPLCIRFYANGRHILSAGQDRAFRLFSV  121 (685)
Q Consensus        92 ~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~  121 (685)
                      .-.|..|.++|+|++++..|..| |.|..+
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~L  112 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRG-VVVLEL  112 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCc-EEEEEe
Confidence            34688899999999999888755 555544

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PRK13684 Ycf48-like protein; Provisional

Probab=94.52  E-value=6.3  Score=40.18  Aligned_cols=147  Identities=13%  Similarity=0.102  Sum_probs=85.9

Q ss_pred             CcCEEEEEEcCCCCEEEEEECCCeEEE-EECCCCceEEEe--ecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeE
Q 005656          252 NGEVVGVACDSTNTLMISAGYHGDIKV-WDFKGRDLKSRW--EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMV  328 (685)
Q Consensus       252 ~~~v~~l~~~~~~~~l~s~s~dg~i~i-wd~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~  328 (685)
                      .+.+.++.+.+++.+++++ ..|.+.. ++ ..++.-...  .....+..+.+.++++.++++ ..|.+++=..+.+..-
T Consensus       172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW  248 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW  248 (334)
T ss_pred             cceEEEEEECCCCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence            4678899999988766555 4565443 22 222212222  223678899999998877765 4566653234444332


Q ss_pred             EEEec----CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEe----eccceEEEEEcCCCCeEEEEEeCCCe
Q 005656          329 RKFEG----HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH----VDVSITALSLSPNMDVLATAHVDQNG  400 (685)
Q Consensus       329 ~~~~~----h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~----~~~~v~~v~~spdg~~Lat~~~d~~~  400 (685)
                      .....    -...+.++.+.|+++.++ ++.+|.|. .....|+.-....    .......+.|..+++.++++. .| .
T Consensus       249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~G-~  324 (334)
T PRK13684        249 SKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQ-RG-V  324 (334)
T ss_pred             ccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECC-Cc-e
Confidence            22221    123478899999887555 44577554 4555555444432    123477888887777777663 43 6


Q ss_pred             EEEEE
Q 005656          401 VYLWV  405 (685)
Q Consensus       401 I~lW~  405 (685)
                      |--|+
T Consensus       325 il~~~  329 (334)
T PRK13684        325 LLRYV  329 (334)
T ss_pred             EEEec
Confidence            66564

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=94.39  E-value=6.1  Score=43.32  Aligned_cols=92  Identities=12%  Similarity=0.153  Sum_probs=52.5

Q ss_pred             cCEEEEEEcCCCCEEEEEECCCe-----EEEEECCC---CceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCC
Q 005656          253 GEVVGVACDSTNTLMISAGYHGD-----IKVWDFKG---RDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA  324 (685)
Q Consensus       253 ~~v~~l~~~~~~~~l~s~s~dg~-----i~iwd~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~  324 (685)
                      +.-..++|-|+|..+++-+.||.     |.++.-+.   |..-........+...+|+.....++++. .+.+.+|-..+
T Consensus       247 g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~-~n~~~lwttkN  325 (1243)
T COG5290         247 GMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAE-GNLLKLWTTKN  325 (1243)
T ss_pred             cchhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHhh-cceEEEEEccc
Confidence            34445899999999999886653     55555332   22222233334556667766655555543 46789997766


Q ss_pred             CeeEEEEecCCCCeEEEEEcC
Q 005656          325 LRMVRKFEGHTDRITDFCFSE  345 (685)
Q Consensus       325 ~~~~~~~~~h~~~I~~l~~sp  345 (685)
                      -.-.-...-.-..+.-+.|+|
T Consensus       326 yhWYLK~e~~ip~~s~vkwhp  346 (1243)
T COG5290         326 YHWYLKVERQIPGISYVKWHP  346 (1243)
T ss_pred             eEEEEEEeecCCCcceeeecc
Confidence            433222222223355566666

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.31  E-value=7.2  Score=39.97  Aligned_cols=121  Identities=13%  Similarity=0.126  Sum_probs=75.9

Q ss_pred             CCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEE
Q 005656          200 ENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW  279 (685)
Q Consensus       200 ~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw  279 (685)
                      ...++|.++.||+|.+.+++--.+..|.+++....+....+..    .....+..|.+.+|..+ .-++..+.. .+.+|
T Consensus        64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~----~ck~k~~~IlGF~W~~s-~e~A~i~~~-G~e~y  137 (657)
T KOG2377|consen   64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQ----ECKTKNANILGFCWTSS-TEIAFITDQ-GIEFY  137 (657)
T ss_pred             cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHH----HhccCcceeEEEEEecC-eeEEEEecC-CeEEE
Confidence            3466899999999999999999999999999865544433321    11133456899999876 445555433 35555


Q ss_pred             ECCC--CceEEEeecCCceeEEEEeecCCEEEEEe--CCCeEEEEEcCCCe
Q 005656          280 DFKG--RDLKSRWEVGCSLVKIVYHRVNGLLATVA--DDLVIRLFDVVALR  326 (685)
Q Consensus       280 d~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~I~i~d~~~~~  326 (685)
                      -...  ..+...-.+...|....|+++.+.+..++  ..+++.=+.++++.
T Consensus       138 ~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~  188 (657)
T KOG2377|consen  138 QVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGT  188 (657)
T ss_pred             EEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeece
Confidence            5432  22222223446788889999888443333  34444444444443

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=94.08  E-value=3.8  Score=37.84  Aligned_cols=137  Identities=11%  Similarity=0.152  Sum_probs=82.9

Q ss_pred             CEEEEEecCCcEEEEECCC--CccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCC------eEEEE---ECC-
Q 005656          215 NFAVLGTAGGWIERFNLQS--GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG------DIKVW---DFK-  282 (685)
Q Consensus       215 ~~l~~g~~dg~i~~~d~~~--~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg------~i~iw---d~~-  282 (685)
                      +.++++...+.|.+|++..  ...+..|         .--+.|..+.++..|++++|--.+.      .+|+|   +.. 
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F---------~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~   99 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTF---------STVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQK   99 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEE---------cchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhc
Confidence            5666668888999999983  2334444         4458899999999999999875322      45554   222 


Q ss_pred             -CCceE-----------------------EEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCee-EE-----EEe
Q 005656          283 -GRDLK-----------------------SRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM-VR-----KFE  332 (685)
Q Consensus       283 -~~~~~-----------------------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~-~~-----~~~  332 (685)
                       ...++                       -.++...++.+++..|-..-|++|+. +++.+|.+..... ..     .|.
T Consensus       100 ~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~~~~~~~~~~lDFe  178 (215)
T PF14761_consen  100 EENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQTIQSEKFSFLDFE  178 (215)
T ss_pred             ccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEEEEecccccEEech
Confidence             11111                       11222356788888887777777764 5788887765433 11     111


Q ss_pred             ----c-CCC-CeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005656          333 ----G-HTD-RITDFCFSEDGKWLLSSGMDGSLRIWDV  364 (685)
Q Consensus       333 ----~-h~~-~I~~l~~spdg~~l~s~s~Dg~I~iwd~  364 (685)
                          . |.+ .+..+++  -+.|+|..+ +-.++++.+
T Consensus       179 ~~l~~~~~~~~p~~v~i--c~~yiA~~s-~~ev~Vlkl  213 (215)
T PF14761_consen  179 RSLIDHIDNFKPTQVAI--CEGYIAVMS-DLEVLVLKL  213 (215)
T ss_pred             hhhhheecCceEEEEEE--EeeEEEEec-CCEEEEEEE
Confidence                1 111 2455556  456787776 445777654

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=93.97  E-value=4  Score=41.50  Aligned_cols=143  Identities=17%  Similarity=0.220  Sum_probs=87.7

Q ss_pred             CCcCEEEEEEcCCCCEEEEEECCCe------EEEEECCC--C--ce---EEEe--e-cCC--------ceeEEEEeecCC
Q 005656          251 HNGEVVGVACDSTNTLMISAGYHGD------IKVWDFKG--R--DL---KSRW--E-VGC--------SLVKIVYHRVNG  306 (685)
Q Consensus       251 h~~~v~~l~~~~~~~~l~s~s~dg~------i~iwd~~~--~--~~---~~~~--~-~~~--------~i~~~~~~~~~~  306 (685)
                      .-+.++++.+.+++..+++.+.+|.      +..+++..  +  ..   ....  . ..+        ....+++.++|.
T Consensus        18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~   97 (326)
T PF13449_consen   18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS   97 (326)
T ss_pred             ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence            3467889999976666777777777      66666543  1  00   1111  1 111        334678877787


Q ss_pred             EEEEEeCC------CeEEEEEcCCCeeEEEEe---------------cCCCCeEEEEEcCCCCEEEEEeC-----CC--c
Q 005656          307 LLATVADD------LVIRLFDVVALRMVRKFE---------------GHTDRITDFCFSEDGKWLLSSGM-----DG--S  358 (685)
Q Consensus       307 ~l~~~~~d------g~I~i~d~~~~~~~~~~~---------------~h~~~I~~l~~spdg~~l~s~s~-----Dg--~  358 (685)
                      ++++.-.+      ..|+.++.. |+....+.               ..+...-+|+++|||+.|+++..     |+  .
T Consensus        98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~  176 (326)
T PF13449_consen   98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA  176 (326)
T ss_pred             EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence            77777667      789889876 66555442               12345789999999996665532     22  1


Q ss_pred             -------EEEEEc--CC-CceeeEE--ee--------ccceEEEEEcCCCCeEEEE
Q 005656          359 -------LRIWDV--IL-ARQIDAI--HV--------DVSITALSLSPNMDVLATA  394 (685)
Q Consensus       359 -------I~iwd~--~~-~~~i~~~--~~--------~~~v~~v~~spdg~~Lat~  394 (685)
                             ++++..  .+ +.....+  ..        ...++.+.+-+++++|+.=
T Consensus       177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE  232 (326)
T PF13449_consen  177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE  232 (326)
T ss_pred             ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence                   555544  43 3233333  22        2338889999998876654

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=93.94  E-value=8.4  Score=39.41  Aligned_cols=121  Identities=20%  Similarity=0.310  Sum_probs=78.6

Q ss_pred             cCEEEEEE--cC-CCC-EEEEEECCCeEEEEECC---CC----ceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEE
Q 005656          253 GEVVGVAC--DS-TNT-LMISAGYHGDIKVWDFK---GR----DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFD  321 (685)
Q Consensus       253 ~~v~~l~~--~~-~~~-~l~s~s~dg~i~iwd~~---~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d  321 (685)
                      ..+.++|+  ++ +|. +++..+.+|.+..|-+.   .+    ++++.+...+.+..|........|+++-.+.-|.-|+
T Consensus       156 ~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~  235 (381)
T PF02333_consen  156 SEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVGEEDVGIWRYD  235 (381)
T ss_dssp             SSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred             ccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEecCccEEEEEe
Confidence            34677776  33 344 56667788988888764   33    4678888889999999999999999999999999898


Q ss_pred             cCC-----CeeEEEEec--CCCCeEEEEEcC--CCC-EEEEEe-CCCcEEEEEcCC-CceeeEE
Q 005656          322 VVA-----LRMVRKFEG--HTDRITDFCFSE--DGK-WLLSSG-MDGSLRIWDVIL-ARQIDAI  373 (685)
Q Consensus       322 ~~~-----~~~~~~~~~--h~~~I~~l~~sp--dg~-~l~s~s-~Dg~I~iwd~~~-~~~i~~~  373 (685)
                      .+.     ++.+....+  ....|-.|++-.  +++ ||+.++ .+++..||+... ...+..|
T Consensus       236 Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f  299 (381)
T PF02333_consen  236 AEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSF  299 (381)
T ss_dssp             SSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEE
T ss_pred             cCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceE
Confidence            762     233333332  345688887743  443 665555 678899999875 3444444

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=93.89  E-value=6.2  Score=37.70  Aligned_cols=191  Identities=13%  Similarity=0.068  Sum_probs=121.9

Q ss_pred             CCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005656          202 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF  281 (685)
Q Consensus       202 ~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~  281 (685)
                      ......++..|||..-+.+...|.|--.|..+|+....-.        +....-..|...|++..-++-+.. -|.-.|-
T Consensus        61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypL--------g~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dp  131 (353)
T COG4257          61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPL--------GSGASPHGIVVGPDGSAWITDTGL-AIGRLDP  131 (353)
T ss_pred             CCCccccccCCCCceEEecCccccceecCCCCCceEEEec--------CCCCCCceEEECCCCCeeEecCcc-eeEEecC
Confidence            4556778889999988998888889899999887755432        455566788889998866654433 4555565


Q ss_pred             CCCceEE-Eee---cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecC-CCCeEEEEEcCCCCEEEEEeCC
Q 005656          282 KGRDLKS-RWE---VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH-TDRITDFCFSEDGKWLLSSGMD  356 (685)
Q Consensus       282 ~~~~~~~-~~~---~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h-~~~I~~l~~spdg~~l~s~s~D  356 (685)
                      ++....+ .+.   .........|.+.|++-+++... .---.|.. ...++.|... ....+.|+..|||..-++.-.+
T Consensus       132 kt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G-~yGrLdPa-~~~i~vfpaPqG~gpyGi~atpdGsvwyaslag  209 (353)
T COG4257         132 KTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIG-AYGRLDPA-RNVISVFPAPQGGGPYGICATPDGSVWYASLAG  209 (353)
T ss_pred             cccceEEeecccccCCCcccceeeCCCccEEEeeccc-cceecCcc-cCceeeeccCCCCCCcceEECCCCcEEEEeccc
Confidence            5544332 111   12677888999999988887532 11111111 1223334322 2346788999999977776666


Q ss_pred             CcEEEEEcCCCceeeEEee----ccceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656          357 GSLRIWDVILARQIDAIHV----DVSITALSLSPNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       357 g~I~iwd~~~~~~i~~~~~----~~~v~~v~~spdg~~Lat~~~d~~~I~lW~  405 (685)
                      ..|-..|-.++. -..+..    +.....+.-+|.|..-++....+ .++-++
T Consensus       210 naiaridp~~~~-aev~p~P~~~~~gsRriwsdpig~~wittwg~g-~l~rfd  260 (353)
T COG4257         210 NAIARIDPFAGH-AEVVPQPNALKAGSRRIWSDPIGRAWITTWGTG-SLHRFD  260 (353)
T ss_pred             cceEEcccccCC-cceecCCCcccccccccccCccCcEEEeccCCc-eeeEeC
Confidence            777777777663 233322    22356666778888877766555 677665

>PHA02790 Kelch-like protein; Provisional

Probab=93.76  E-value=3.2  Score=44.82  Aligned_cols=143  Identities=10%  Similarity=-0.057  Sum_probs=69.0

Q ss_pred             cCCCEEEEEecC--CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCC---eEEEEECCCCce
Q 005656          212 ACGNFAVLGTAG--GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG---DIKVWDFKGRDL  286 (685)
Q Consensus       212 ~~g~~l~~g~~d--g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg---~i~iwd~~~~~~  286 (685)
                      -+|...++|+.+  ..+..||..++.....-.     ...... ....+.  -+|+..+.||.++   .+..||..+.+-
T Consensus       317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~-----l~~~r~-~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W  388 (480)
T PHA02790        317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS-----LLKPRC-NPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQW  388 (480)
T ss_pred             ECCEEEEECCcCCCCceEEEECCCCeEEECCC-----CCCCCc-ccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEE
Confidence            356666777653  357888876654332111     000111 111222  2566677777543   467888776544


Q ss_pred             EEEeecCCce-eEEEEeecCCEEEEEeCCCeEEEEEcCCCeeE--EEEecCCCCeEEEEEcCCCCEEEEEeCC-----Cc
Q 005656          287 KSRWEVGCSL-VKIVYHRVNGLLATVADDLVIRLFDVVALRMV--RKFEGHTDRITDFCFSEDGKWLLSSGMD-----GS  358 (685)
Q Consensus       287 ~~~~~~~~~i-~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~--~~~~~h~~~I~~l~~spdg~~l~s~s~D-----g~  358 (685)
                      ...-....+. ...+..-++.+.++|   |.+.+||..+.+-.  ..+.........+.+  +|+..+.||.+     .+
T Consensus       389 ~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~  463 (480)
T PHA02790        389 QFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDT  463 (480)
T ss_pred             EeCCCCCCccccceEEEECCEEEEEC---CceEEecCCCCcEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccce
Confidence            3321111111 112223456666666   45778888765322  222211122222233  67777777754     23


Q ss_pred             EEEEEcCCC
Q 005656          359 LRIWDVILA  367 (685)
Q Consensus       359 I~iwd~~~~  367 (685)
                      |.+||..++
T Consensus       464 ve~Yd~~~~  472 (480)
T PHA02790        464 IEVYNNRTY  472 (480)
T ss_pred             EEEEECCCC
Confidence            555555443

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=93.73  E-value=2.7  Score=38.81  Aligned_cols=103  Identities=14%  Similarity=0.224  Sum_probs=66.6

Q ss_pred             CEEEEEeCCCeEEEEEcC--CCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCC---C---cEEEE---EcC--CCce---
Q 005656          306 GLLATVADDLVIRLFDVV--ALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD---G---SLRIW---DVI--LARQ---  369 (685)
Q Consensus       306 ~~l~~~~~dg~I~i~d~~--~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~D---g---~I~iw---d~~--~~~~---  369 (685)
                      ..|.++...+.|.+|++.  ..+...+|..- +.|..+.++..|+||+|--.+   .   .+|+|   +..  ...+   
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            455455667889999988  34666777644 789999999999999986422   2   56665   211  1111   


Q ss_pred             ------------------eeEEe--eccceEEEEEcCCCCeEEEEEeCCCeEEEEEcCCCcC
Q 005656          370 ------------------IDAIH--VDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFS  411 (685)
Q Consensus       370 ------------------i~~~~--~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~~~~  411 (685)
                                        +..+.  ...++.+++..|-..-|++|+.+  .+.+|..+....
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~--~l~lf~l~~~~~  167 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGN--KLVLFTLKYQTI  167 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCC--EEEEEEEEEEEE
Confidence                              12222  23458889888865556666544  899998765443

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=93.32  E-value=4.5  Score=41.93  Aligned_cols=146  Identities=15%  Similarity=0.210  Sum_probs=93.2

Q ss_pred             CCCCEEE-EEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCC-------EEEEEeCCCeEEEEEcCC-CeeEEEEe
Q 005656          262 STNTLMI-SAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG-------LLATVADDLVIRLFDVVA-LRMVRKFE  332 (685)
Q Consensus       262 ~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~dg~I~i~d~~~-~~~~~~~~  332 (685)
                      .+..+|+ .++....++-.|+..|+.+..+..+..+ -+.|.|..+       .-++|-.+..|.-.|.+- |..+..-.
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e  555 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE  555 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence            3444444 4445567888899999999999988777 677887542       233455566665556542 32222211


Q ss_pred             cCCCCeEEEEEcC----CCCEEEEEeCCCcEEEEEcCCCceeeEEe-eccceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          333 GHTDRITDFCFSE----DGKWLLSSGMDGSLRIWDVILARQIDAIH-VDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       333 ~h~~~I~~l~~sp----dg~~l~s~s~Dg~I~iwd~~~~~~i~~~~-~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                       ....++.-.||.    ...|+|.||..|.|++||.-.-+....+. ....|..+..+.+|+++++++..  .+-+-+.+
T Consensus       556 -sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~--yllL~d~~  632 (776)
T COG5167         556 -SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN--YLLLTDVP  632 (776)
T ss_pred             -ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc--eEEEEecc
Confidence             122233333333    34599999999999999965443333333 34458899999999999998866  77777766


Q ss_pred             CCcC
Q 005656          408 CMFS  411 (685)
Q Consensus       408 ~~~~  411 (685)
                      --+.
T Consensus       633 ik~g  636 (776)
T COG5167         633 IKYG  636 (776)
T ss_pred             cccC
Confidence            5443

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=93.32  E-value=15  Score=40.34  Aligned_cols=150  Identities=17%  Similarity=0.256  Sum_probs=83.0

Q ss_pred             CCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEE--EeecCCceeEE---EEee-----c-CCEEEEEeC-C---C
Q 005656          251 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS--RWEVGCSLVKI---VYHR-----V-NGLLATVAD-D---L  315 (685)
Q Consensus       251 h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~i~~~---~~~~-----~-~~~l~~~~~-d---g  315 (685)
                      -...|.++.+.++++.+++.-.+|.|.+||+..+....  .......+ .+   .|-+     + ..++++.+. +   -
T Consensus       128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~-~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~  206 (670)
T PF10395_consen  128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSI-NVSYSKFVNDFELENGKDLLLTVSQLSNSKL  206 (670)
T ss_pred             cccceEEEEEecCCCEEEEEEcCCcEEEEecccccccccccccccccc-ceehhhhhcccccccCCceEEEEEEcCCCcE
Confidence            35789999999999999999999999999993322211  11111110 11   1111     1 234444333 2   2


Q ss_pred             eEEEEEc-CCCeeEEEEe---cCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeEEeeccc-------eEEEE
Q 005656          316 VIRLFDV-VALRMVRKFE---GHTDRITDFCFSE-DGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-------ITALS  383 (685)
Q Consensus       316 ~I~i~d~-~~~~~~~~~~---~h~~~I~~l~~sp-dg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-------v~~v~  383 (685)
                      ..+++.+ .....+..+.   .+........|.. +|....-  .+++|.+|+++..+...++..+.-       +.++.
T Consensus       207 ~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~  284 (670)
T PF10395_consen  207 SYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK  284 (670)
T ss_pred             EEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEee
Confidence            5677777 1222222332   2222233334433 4543333  678999999999988888876522       33333


Q ss_pred             EcCCCCeEEEEEeCCCeEEEEEc
Q 005656          384 LSPNMDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       384 ~spdg~~Lat~~~d~~~I~lW~~  406 (685)
                      - |..+.+..+. + +.|++.+.
T Consensus       285 ~-~s~nRvLLs~-~-nkIyLld~  304 (670)
T PF10395_consen  285 P-PSPNRVLLSV-N-NKIYLLDL  304 (670)
T ss_pred             c-CCCCeEEEEc-C-CEEEEEee
Confidence            2 3333444443 2 38999874

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=93.27  E-value=4.6  Score=34.20  Aligned_cols=121  Identities=17%  Similarity=0.136  Sum_probs=73.6

Q ss_pred             EEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcC-----CCCEEEEEECCCeEEEEECCC
Q 005656          209 TISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS-----TNTLMISAGYHGDIKVWDFKG  283 (685)
Q Consensus       209 ~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-----~~~~l~s~s~dg~i~iwd~~~  283 (685)
                      .|......|++++..|.|.+++............ .......-...|++++-.+     ....|+.|+ ...+..||+..
T Consensus         5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~-~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~   82 (136)
T PF14781_consen    5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQD-SDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVEN   82 (136)
T ss_pred             EeCCCceeEEEEecCCEEEEECCCcccccccccc-CceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEccc
Confidence            3444556788999999999998875543221100 0001114456788886544     234566555 57899999988


Q ss_pred             CceEEEeecCCceeEEEEeecC---CEEEEEeCCCeEEEEEcCCCeeEEEE
Q 005656          284 RDLKSRWEVGCSLVKIVYHRVN---GLLATVADDLVIRLFDVVALRMVRKF  331 (685)
Q Consensus       284 ~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~I~i~d~~~~~~~~~~  331 (685)
                      ..-+...+.+..+.++.+-.-+   .-++..+.+..|.-||....+...+.
T Consensus        83 N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV  133 (136)
T PF14781_consen   83 NSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV  133 (136)
T ss_pred             CchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence            7666555566777777764322   34555555677887877665554443

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.26  E-value=2.9  Score=46.96  Aligned_cols=29  Identities=14%  Similarity=0.141  Sum_probs=22.8

Q ss_pred             CCCCCeEEEEEccCCCEEEEEecCCcEEE
Q 005656          200 ENPTAVKACTISACGNFAVLGTAGGWIER  228 (685)
Q Consensus       200 ~~~~~v~~~~~s~~g~~l~~g~~dg~i~~  228 (685)
                      .....|..+.++++|.+++..+..|.+.+
T Consensus        82 ~~~f~v~~i~~n~~g~~lal~G~~~v~V~  110 (717)
T PF10168_consen   82 PPLFEVHQISLNPTGSLLALVGPRGVVVL  110 (717)
T ss_pred             CCceeEEEEEECCCCCEEEEEcCCcEEEE
Confidence            34457999999999999999888774443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=93.25  E-value=11  Score=38.39  Aligned_cols=163  Identities=15%  Similarity=0.146  Sum_probs=93.8

Q ss_pred             CCCeEEEEEccCCCEEEEEecCCc------EEEEECCCCc-cccccccccccccCCCC--------cCEEEEEEcCCCCE
Q 005656          202 PTAVKACTISACGNFAVLGTAGGW------IERFNLQSGI-SRGSYLDMSERSNYAHN--------GEVVGVACDSTNTL  266 (685)
Q Consensus       202 ~~~v~~~~~s~~g~~l~~g~~dg~------i~~~d~~~~~-~~~~~~~~~~~~~~~h~--------~~v~~l~~~~~~~~  266 (685)
                      -+.+..+.+.+++..+++-+.+|.      ++.+++.... .................        -..-+|++.+++.+
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~   98 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF   98 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence            456788999976666777777777      7666665411 11111000000000111        13447788778888


Q ss_pred             EEEEECC------CeEEEEECCCCceEEEe----------------ecCCceeEEEEeecCCEEEEEeC-----CC--e-
Q 005656          267 MISAGYH------GDIKVWDFKGRDLKSRW----------------EVGCSLVKIVYHRVNGLLATVAD-----DL--V-  316 (685)
Q Consensus       267 l~s~s~d------g~i~iwd~~~~~~~~~~----------------~~~~~i~~~~~~~~~~~l~~~~~-----dg--~-  316 (685)
                      +++.-.+      ..|+.++.. |+....+                ..+.....++++|+|+.|+++.+     |+  . 
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~  177 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN  177 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence            7777666      778888876 5544333                12356789999999996666543     22  1 


Q ss_pred             ------EEE--EEcCC-CeeEEEE----ec-----CCCCeEEEEEcCCCCEEEEE-----eCCCcEEEEEcC
Q 005656          317 ------IRL--FDVVA-LRMVRKF----EG-----HTDRITDFCFSEDGKWLLSS-----GMDGSLRIWDVI  365 (685)
Q Consensus       317 ------I~i--~d~~~-~~~~~~~----~~-----h~~~I~~l~~spdg~~l~s~-----s~Dg~I~iwd~~  365 (685)
                            +++  ||..+ ++....+    ..     ....|+.+.+-+++++|+.=     +....++|+.+.
T Consensus       178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~  249 (326)
T PF13449_consen  178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD  249 (326)
T ss_pred             cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence                  444  55554 3233322    22     35679999999999977632     123456666443

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=93.07  E-value=0.42  Score=31.25  Aligned_cols=32  Identities=31%  Similarity=0.394  Sum_probs=27.1

Q ss_pred             CcEEEEEEccCCC--CEEEEEeCCCcEEEEeCCC
Q 005656            3 GAVTALAFSSDGQ--PLLASGASSGVISIWNLEK   34 (685)
Q Consensus         3 ~~V~~l~fspdg~--~~latg~~dg~I~vwd~~~   34 (685)
                      |.|.++.|||+..  .+||.+-..|.|.|+|+.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            6799999997543  4899888889999999985

It contains a characteristic DLL sequence motif.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=92.73  E-value=4.2  Score=44.08  Aligned_cols=66  Identities=23%  Similarity=0.340  Sum_probs=46.1

Q ss_pred             cEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEE
Q 005656            4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI   74 (685)
Q Consensus         4 ~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd   74 (685)
                      -++++.-+|.|+ -++.|..||+|++|++...+.-....  -..+-..+.|...|  |+++..|..+--|.
T Consensus        16 ~~~aiqshp~~~-s~v~~~~d~si~lfn~~~r~qski~~--~~~p~~nlv~tnhg--l~~~tsdrr~la~~   81 (1636)
T KOG3616|consen   16 FTTAIQSHPGGQ-SFVLAHQDGSIILFNFIPRRQSKICE--EAKPKENLVFTNHG--LVTATSDRRALAWK   81 (1636)
T ss_pred             eeeeeeecCCCc-eEEEEecCCcEEEEeecccchhhhhh--hcCCccceeeeccc--eEEEeccchhheee
Confidence            467888889888 88999999999999987765533222  22344556666544  55666677777774

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.20  E-value=0.77  Score=43.42  Aligned_cols=63  Identities=21%  Similarity=0.333  Sum_probs=48.0

Q ss_pred             EcCCCCEEEEEeCCCcEEEEEcCCCceeeEE-------e--------eccceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          343 FSEDGKWLLSSGMDGSLRIWDVILARQIDAI-------H--------VDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       343 ~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~-------~--------~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                      +..++.+|++.+.+|.+++||+.+++.+..-       .        ....|..+.++.+|.-+++-+ +| ..|.|+..
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng-~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NG-DSYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CC-CEEEeccc
Confidence            4457889999999999999999988765332       1        223389999999998888776 44 68998743

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.02  E-value=0.94  Score=42.81  Aligned_cols=74  Identities=14%  Similarity=0.217  Sum_probs=48.5

Q ss_pred             EEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccC------CCCcCEEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005656          208 CTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNY------AHNGEVVGVACDSTNTLMISAGYHGDIKVWDF  281 (685)
Q Consensus       208 ~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~------~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~  281 (685)
                      +.+..+++++++-+.+|.+++||+.+++....-.........      .....|..+.++.+|.-+++-+ +|..+.|+.
T Consensus        16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~   94 (219)
T PF07569_consen   16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP   94 (219)
T ss_pred             EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence            335668999999999999999999998765443111110100      3456677777777776666554 466677765


Q ss_pred             C
Q 005656          282 K  282 (685)
Q Consensus       282 ~  282 (685)
                      .
T Consensus        95 ~   95 (219)
T PF07569_consen   95 D   95 (219)
T ss_pred             c
Confidence            4

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=91.86  E-value=15  Score=36.80  Aligned_cols=63  Identities=16%  Similarity=0.322  Sum_probs=43.2

Q ss_pred             ccCCCCEEEEEeCCCcEEEEeCCC--CeeeEEeecccccCeeEEEEeCCCcEEEEec-CCCcEEEEEecCC
Q 005656           11 SSDGQPLLASGASSGVISIWNLEK--RRLQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTT   78 (685)
Q Consensus        11 spdg~~~latg~~dg~I~vwd~~~--~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s-~D~~v~iWd~~~~   78 (685)
                      ..+++ +|+.|+.+| +.+-++..  ++..+.   .+...|+++...+..+.|++-+ ....++.+++..-
T Consensus        10 ~~~~~-~lL~GTe~G-ly~~~~~~~~~~~~kl---~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L   75 (302)
T smart00036       10 TCDGK-WLLVGTEEG-LYVLNISDQPGTLEKL---IGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSAL   75 (302)
T ss_pred             ccCCc-EEEEEeCCc-eEEEEcccCCCCeEEe---cCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHh
Confidence            33444 899999999 55666654  333333   4677999999999888776654 3345999988543

Unpublished observations.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=91.83  E-value=13  Score=36.00  Aligned_cols=275  Identities=11%  Similarity=0.116  Sum_probs=143.5

Q ss_pred             ccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCc
Q 005656           46 DNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ  125 (685)
Q Consensus        46 ~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~  125 (685)
                      .+-+..+.++  +++...+..+.-++|.|+.+.+. ++++..+.- .+--.+  |.-.|++...+..|.-+.+.|+.+.+
T Consensus        86 ~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~s-P~~~~~lnt-~gyayg--v~vsGn~aYVadlddgfLivdvsdps  159 (370)
T COG5276          86 RDLFADVRVS--EEYVYVADWSSGLRIVDISTPDS-PTLIGFLNT-DGYAYG--VYVSGNYAYVADLDDGFLIVDVSDPS  159 (370)
T ss_pred             hhhhheeEec--ccEEEEEcCCCceEEEeccCCCC-cceeccccC-CceEEE--EEecCCEEEEeeccCcEEEEECCCCC
Confidence            3455666666  45666677778899999988753 233333321 122233  33457788888866667788886654


Q ss_pred             eeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCe
Q 005656          126 QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAV  205 (685)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v  205 (685)
                      ........                                                            .     ......
T Consensus       160 sP~lagry------------------------------------------------------------a-----~~~~d~  174 (370)
T COG5276         160 SPQLAGRY------------------------------------------------------------A-----LPGGDT  174 (370)
T ss_pred             Cceeeeee------------------------------------------------------------c-----cCCCCc
Confidence            32211100                                                            0     111112


Q ss_pred             EEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Q 005656          206 KACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD  285 (685)
Q Consensus       206 ~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~  285 (685)
                      ..+++|  |++..++..++-+.+.|+...........      ......+.++..+++..+++..  +--+.+-|..+.+
T Consensus       175 ~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~------~n~g~g~~sv~vsdnr~y~vvy--~egvlivd~s~~s  244 (370)
T COG5276         175 HDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGS------YNTGPGTYSVSVSDNRAYLVVY--DEGVLIVDVSGPS  244 (370)
T ss_pred             eeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEE------EecCCceEEEEecCCeeEEEEc--ccceEEEecCCCC
Confidence            334443  78888888899999999876544322210      0122367788877765555443  3456777776655


Q ss_pred             eEEEe---ecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCee---EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 005656          286 LKSRW---EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM---VRKFEGHTDRITDFCFSEDGKWLLSSGMDGSL  359 (685)
Q Consensus       286 ~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~---~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I  359 (685)
                      ....+   +...++..-.+.-.+++..++..+.-+.+.|+.+..-   ...+......-..+..+  +.++..+..+ +.
T Consensus       245 sp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay--~~y~yiadkn-~g  321 (370)
T COG5276         245 SPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--GNYNYIADKN-TG  321 (370)
T ss_pred             CceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe--cCeeEeccCC-ce
Confidence            33333   3333322223344467777777777777777765321   11111111122223332  3344444333 33


Q ss_pred             EEEEcCCCceeeEEee-ccceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656          360 RIWDVILARQIDAIHV-DVSITALSLSPNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       360 ~iwd~~~~~~i~~~~~-~~~v~~v~~spdg~~Lat~~~d~~~I~lW~  405 (685)
                      .+-+...-+....... ...+.+.+.+-+.+++.++..++ ++.+|+
T Consensus       322 ~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~-gl~i~~  367 (370)
T COG5276         322 AVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNG-GLSIIE  367 (370)
T ss_pred             EEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCC-CEEEEE
Confidence            3444433222221111 11144455555666778887776 788886

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=91.66  E-value=0.26  Score=54.01  Aligned_cols=179  Identities=16%  Similarity=0.276  Sum_probs=96.6

Q ss_pred             CceEEEEEcCc--cccCce-eecCCCCCCCCeEEEEE---ccCCCEEEEEecCCcEEEEECCCCccccccccccccccCC
Q 005656          177 TAQAYVWRLQN--FVLGEH-ILRPCPENPTAVKACTI---SACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYA  250 (685)
Q Consensus       177 ~~~~~~w~~~~--~~~~~~-~~~~~~~~~~~v~~~~~---s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~  250 (685)
                      -+...+|++.-  +.+... .+.+.......+.-+.|   -++.-++.++..+|.+++.++..... ..+        .+
T Consensus       152 vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~--------rs  222 (1283)
T KOG1916|consen  152 VGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLF--------RS  222 (1283)
T ss_pred             hhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHH--------Hh
Confidence            35667777653  222222 22222233333344444   44677888899999999988765443 111        15


Q ss_pred             CCcCEEEEE-----------EcCCCCEEEEEECCCeEEEEECC-CC----ceEEEeecC--CceeEEEEeecC-------
Q 005656          251 HNGEVVGVA-----------CDSTNTLMISAGYHGDIKVWDFK-GR----DLKSRWEVG--CSLVKIVYHRVN-------  305 (685)
Q Consensus       251 h~~~v~~l~-----------~~~~~~~l~s~s~dg~i~iwd~~-~~----~~~~~~~~~--~~i~~~~~~~~~-------  305 (685)
                      |...++.++           .+|||+.+++++.||.+++|-+. ++    .+...+..+  ++-.|..++.+.       
T Consensus       223 Hs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~  302 (1283)
T KOG1916|consen  223 HSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIG  302 (1283)
T ss_pred             cCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccc
Confidence            665555443           58999999999999999888764 22    333444433  333333333221       


Q ss_pred             C--EEEEEeC-CCeEEEEEcCCCeeEEE--------EecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEc
Q 005656          306 G--LLATVAD-DLVIRLFDVVALRMVRK--------FEGHTDRITDFCFSE-DGKWLLSSGMDGSLRIWDV  364 (685)
Q Consensus       306 ~--~l~~~~~-dg~I~i~d~~~~~~~~~--------~~~h~~~I~~l~~sp-dg~~l~s~s~Dg~I~iwd~  364 (685)
                      .  +++++++ +..+++|.....+|+..        ...|.+.|+.+.... --..+++-+-|++|.+|.=
T Consensus       303 ~w~~~Itttd~nre~k~w~~a~w~Cll~~~~d~v~iV~p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn  373 (1283)
T KOG1916|consen  303 KWVLRITTTDVNREEKFWAEAPWQCLLDKLIDGVQIVGPHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQN  373 (1283)
T ss_pred             eeEEEEecccCCcceeEeeccchhhhhhhcccceEeecCCCccccchhhhHHHHHHHHHhhhHHHHHHhhc
Confidence            1  3334433 45788888777766511        112333333221100 0012344567888888853

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=91.49  E-value=21  Score=37.75  Aligned_cols=64  Identities=22%  Similarity=0.218  Sum_probs=43.1

Q ss_pred             eeEEEEee---------cCCEEEEEeCCCeEEEEEcCCCe--e----EEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcE
Q 005656          296 LVKIVYHR---------VNGLLATVADDLVIRLFDVVALR--M----VRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSL  359 (685)
Q Consensus       296 i~~~~~~~---------~~~~l~~~~~dg~I~i~d~~~~~--~----~~~~~~h~~~I~~l~~spdg-~~l~s~s~Dg~I  359 (685)
                      ...++|-.         ++.+|+.+-..+.|....+....  .    ...+.. .++|.++..+||| .+.+..+..|.+
T Consensus       351 psg~~~y~~~g~~~p~w~g~llv~~L~~~~l~r~~l~~~~~~v~~~~~~~~~~-~~RiRdv~~~pDg~~iy~~td~~g~~  429 (454)
T TIGR03606       351 PSSAYYYKGGEKGITGWENSLLIPSLKRGVIYRIKLDPDYSTVYGDAVPMFKT-NNRYRDVIASPDGNVLYVATDNFGNV  429 (454)
T ss_pred             CceeEEEecCcccCcccCCCEEEEEcCCCeEEEEEecCCcceecceeEEeecC-CCeeEEEEECCCCCEEEEEEcCCCcc
Confidence            44566665         36788888888888888886442  2    223443 6799999999997 544445566654


Q ss_pred             E
Q 005656          360 R  360 (685)
Q Consensus       360 ~  360 (685)
                      .
T Consensus       430 ~  430 (454)
T TIGR03606       430 Q  430 (454)
T ss_pred             c
Confidence            3

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=91.14  E-value=1.6  Score=44.42  Aligned_cols=158  Identities=15%  Similarity=0.087  Sum_probs=95.7

Q ss_pred             CCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEE-eec---C---Ccee-EEEEeecCCEEEEEeCCCeEEEE-
Q 005656          250 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSR-WEV---G---CSLV-KIVYHRVNGLLATVADDLVIRLF-  320 (685)
Q Consensus       250 ~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~---~---~~i~-~~~~~~~~~~l~~~~~dg~I~i~-  320 (685)
                      .....|..+-..|+|+.+..-+. .++.++++.+...... +-.   +   +.++ .+..-..|.-+.+++.||.|.-| 
T Consensus       218 ~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWF  296 (733)
T COG4590         218 VPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWF  296 (733)
T ss_pred             CCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeee
Confidence            34466778889999998877664 7888888876543221 111   1   1122 11122345577888889988776 


Q ss_pred             EcCCC-----eeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEE
Q 005656          321 DVVAL-----RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAH  395 (685)
Q Consensus       321 d~~~~-----~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~  395 (685)
                      |++.+     ..++.++-....+..+.--.+.+-+++-+..|++.++.....+.+-.-..-..+.-+++||.+.+|++- 
T Consensus       297 dvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~e-  375 (733)
T COG4590         297 DVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLSE-  375 (733)
T ss_pred             eeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchheee-
Confidence            44332     223333322334443333334456777788899888876555444333333357788999999999886 


Q ss_pred             eCCCeEEEEEcCCCc
Q 005656          396 VDQNGVYLWVNRCMF  410 (685)
Q Consensus       396 ~d~~~I~lW~~~~~~  410 (685)
                       |++.|+++.....+
T Consensus       376 -~~gki~~~~l~Nr~  389 (733)
T COG4590         376 -DQGKIRLAQLENRN  389 (733)
T ss_pred             -cCCceEEEEecCCC
Confidence             55589988755443

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=91.07  E-value=22  Score=37.12  Aligned_cols=146  Identities=8%  Similarity=-0.015  Sum_probs=83.0

Q ss_pred             cCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc-eEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCe-----
Q 005656          253 GEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD-LKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALR-----  326 (685)
Q Consensus       253 ~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~-----  326 (685)
                      +....+..++++.+++.+.....++-||--... ..........+..+.+.+++.+++++ .+|.+. +....++     
T Consensus       239 Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~  316 (398)
T PLN00033        239 GTFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDF  316 (398)
T ss_pred             cceeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCccccc
Confidence            345556677888766666543333334422111 12233345678899999998887766 445543 3334443     


Q ss_pred             eEEEEec--CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEe----eccceEEEEEcCCCCeEEEEEeCCCe
Q 005656          327 MVRKFEG--HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH----VDVSITALSLSPNMDVLATAHVDQNG  400 (685)
Q Consensus       327 ~~~~~~~--h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~----~~~~v~~v~~spdg~~Lat~~~d~~~  400 (685)
                      .......  -...++++.|.+++..++ ++..|.+.... ..|+.-....    ...+...+.|.++++..+++. +| .
T Consensus       317 ~f~~~~~~~~~~~l~~v~~~~d~~~~a-~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~-~G-~  392 (398)
T PLN00033        317 DFEEADIKSRGFGILDVGYRSKKEAWA-AGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGN-DG-V  392 (398)
T ss_pred             ceeecccCCCCcceEEEEEcCCCcEEE-EECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEeC-Cc-E
Confidence            1222221  123489999998877555 45678666553 4555433332    234588999988877777763 43 4


Q ss_pred             EEEE
Q 005656          401 VYLW  404 (685)
Q Consensus       401 I~lW  404 (685)
                      |.-|
T Consensus       393 il~~  396 (398)
T PLN00033        393 LLRY  396 (398)
T ss_pred             EEEe
Confidence            4433

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=90.90  E-value=1.1  Score=29.29  Aligned_cols=41  Identities=20%  Similarity=0.211  Sum_probs=31.7

Q ss_pred             CCCCEEEEEe-CCCcEEEEEcCCCceeeEEeeccceEEEEEc
Q 005656          345 EDGKWLLSSG-MDGSLRIWDVILARQIDAIHVDVSITALSLS  385 (685)
Q Consensus       345 pdg~~l~s~s-~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~s  385 (685)
                      |++++|+++. .+++|.++|..+++.+..+........++|+
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~~   42 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAVS   42 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence            6788777655 5789999999999998888876556666654

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=90.87  E-value=25  Score=37.45  Aligned_cols=110  Identities=14%  Similarity=0.160  Sum_probs=66.6

Q ss_pred             CceeEEEEeecCCEEEEEeCCCeEEEEEcCC-CeeEEEEec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceee
Q 005656          294 CSLVKIVYHRVNGLLATVADDLVIRLFDVVA-LRMVRKFEG-HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQID  371 (685)
Q Consensus       294 ~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~-~~~~~~~~~-h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~  371 (685)
                      ..|+..++..++ .+-.|+...-+..|+..+ +.......+ ..++|..+.=.|+++ |..|+.+|.++. +.+.++...
T Consensus       376 ~nit~~~~d~~g-~lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~-~pe~~~v~n  452 (671)
T COG3292         376 MNITTTLEDSRG-RLWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR-DPESGRVLN  452 (671)
T ss_pred             cccchhhhccCC-cEEEEecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec-Cccccchhc
Confidence            456666666644 455555554455666665 333333332 356788888889988 777888885543 334444433


Q ss_pred             EEee------ccceEEEEEcCCCCeEEEEEeCCCeEEEEEcCCC
Q 005656          372 AIHV------DVSITALSLSPNMDVLATAHVDQNGVYLWVNRCM  409 (685)
Q Consensus       372 ~~~~------~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~~  409 (685)
                      .+..      .+.+..+.+.|+|+.-+.++ +  +|..|+.+..
T Consensus       453 ~ln~~~~~l~~s~~~~lg~~~~g~Lw~a~g-~--gva~~~sq~~  493 (671)
T COG3292         453 LLNPGSHGLDGSRVEQLGLGPDGRLWLAAG-S--GVAAWESQRR  493 (671)
T ss_pred             ccccccCcCCcchhhhhccCCCCceEEEec-c--eeeeeccccc
Confidence            3332      22377889999998655543 3  6899986654

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=90.86  E-value=2.9  Score=43.27  Aligned_cols=142  Identities=16%  Similarity=0.138  Sum_probs=86.8

Q ss_pred             cCCCEEE-EEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCC--------CEEEEEECCCeEEEEECC
Q 005656          212 ACGNFAV-LGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN--------TLMISAGYHGDIKVWDFK  282 (685)
Q Consensus       212 ~~g~~l~-~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--------~~l~s~s~dg~i~iwd~~  282 (685)
                      .+.+.++ .|.....++-.|+..|+.+....        -|.. | -+.+.|..        +.|+ |-.+..|.-.|.+
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW~--------~~dd-v-vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR  545 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWD--------LKDD-V-VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPR  545 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEee--------cCCc-c-eeecCCchhHHhcCccceEE-eecccceEEeccc
Confidence            3444443 34455678888888888776653        3333 2 56666643        2333 4345555555544


Q ss_pred             -CCceEEEeecCCceeEEEE----eecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q 005656          283 -GRDLKSRWEVGCSLVKIVY----HRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG  357 (685)
Q Consensus       283 -~~~~~~~~~~~~~i~~~~~----~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg  357 (685)
                       .|..+.......-.+.-.|    ...+.++|+|+..|.|++||--..+.-..+.+-...|..+..+.+|+++++.+. .
T Consensus       546 ~~gNKi~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~  624 (776)
T COG5167         546 ARGNKIKVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-N  624 (776)
T ss_pred             ccCCceeeeeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-c
Confidence             2322222222222222222    234679999999999999997655555566777888999999999999887764 4


Q ss_pred             cEEEEEcC
Q 005656          358 SLRIWDVI  365 (685)
Q Consensus       358 ~I~iwd~~  365 (685)
                      .+.+-|++
T Consensus       625 yllL~d~~  632 (776)
T COG5167         625 YLLLTDVP  632 (776)
T ss_pred             eEEEEecc
Confidence            67777764

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=90.79  E-value=25  Score=37.26  Aligned_cols=102  Identities=14%  Similarity=0.104  Sum_probs=59.9

Q ss_pred             cCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceE--EEe----e--cCCceeEEEEeecC------CEEEEEe------
Q 005656          253 GEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLK--SRW----E--VGCSLVKIVYHRVN------GLLATVA------  312 (685)
Q Consensus       253 ~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~----~--~~~~i~~~~~~~~~------~~l~~~~------  312 (685)
                      ...+.|+|.|+++++++--..|.|++++-.++...  ..+    .  .......++++|+-      ++|++..      
T Consensus        30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~  109 (454)
T TIGR03606        30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGD  109 (454)
T ss_pred             CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCC
Confidence            45678999999987776655699999986554321  111    1  23667899999874      3444442      


Q ss_pred             ----CCCeEEEEEcCCC-------ee-EEEEe---cCCCCeEEEEEcCCCCEEEEEeCC
Q 005656          313 ----DDLVIRLFDVVAL-------RM-VRKFE---GHTDRITDFCFSEDGKWLLSSGMD  356 (685)
Q Consensus       313 ----~dg~I~i~d~~~~-------~~-~~~~~---~h~~~I~~l~~spdg~~l~s~s~D  356 (685)
                          ....|.-|.+...       +. +..+.   .|.  -..|+|.|||.+.++.+..
T Consensus       110 ~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       110 KELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             CCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEECCCCcEEEEECCC
Confidence                1234544554311       11 11111   233  3467899999876655543

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.72  E-value=41  Score=39.69  Aligned_cols=77  Identities=12%  Similarity=0.233  Sum_probs=52.1

Q ss_pred             ccCeeEEEEeCCCcEEEEecCCCcEEEEEec--CCCC-------------------CCceeEecccCCCCCeEEEEecCC
Q 005656           46 DNAIISLHFFANEPVLMSASADNSIKMWIFD--TTDG-------------------DPRLLRFRSGHSAPPLCIRFYANG  104 (685)
Q Consensus        46 ~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~--~~~~-------------------~~~~~~~~~~h~~~v~~i~~~~~~  104 (685)
                      .-.|+|+....+|+.+++| .||  .+|.+.  ..++                   .+..+.....+..+|..+.....-
T Consensus       178 g~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR  254 (1311)
T KOG1900|consen  178 GVSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR  254 (1311)
T ss_pred             CceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence            3457888877788777766 455  455442  2111                   011222223677899999998777


Q ss_pred             CEEEEEeCCCceEEEEeecCc
Q 005656          105 RHILSAGQDRAFRLFSVIQDQ  125 (685)
Q Consensus       105 ~~l~s~s~dg~i~vwd~~~~~  125 (685)
                      ..+.+-+..|+|++|++..+.
T Consensus       255 ~IlY~lsek~~v~~Y~i~~~G  275 (1311)
T KOG1900|consen  255 NILYVLSEKGTVSAYDIGGNG  275 (1311)
T ss_pred             ceeeeeccCceEEEEEccCCC
Confidence            788889999999999998743

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.22  E-value=32  Score=40.68  Aligned_cols=72  Identities=15%  Similarity=0.111  Sum_probs=43.5

Q ss_pred             CCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCee
Q 005656          251 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM  327 (685)
Q Consensus       251 h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~  327 (685)
                      +...+.+..+...+.. ..+..-+.+-+|+.........+...+...    ++++..++++..||.+..||...++.
T Consensus       197 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~h~Dgs~~fWd~s~g~~  268 (993)
T KOG1983|consen  197 IEYESLQVLYYSPTKI-LIGFNRGLVVIKDRASKYVQSAYLPNGQLE----SRDGSHFVSYHTDGSYAFWDVSSGKL  268 (993)
T ss_pred             cccccceeeeecCCCc-ceeeeeeeeeehhcccccchhhcccccccC----ccCCceEEEEEecCCEEeeecCCCce
Confidence            4444555554444332 333345667777765544333333221111    77888999999999999999998755

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=90.07  E-value=1.5  Score=28.79  Aligned_cols=31  Identities=19%  Similarity=0.163  Sum_probs=25.9

Q ss_pred             CCeEEEEEcCCC---CEEEEEeCCCcEEEEEcCC
Q 005656          336 DRITDFCFSEDG---KWLLSSGMDGSLRIWDVIL  366 (685)
Q Consensus       336 ~~I~~l~~spdg---~~l~s~s~Dg~I~iwd~~~  366 (685)
                      +.|.++.|||..   .+|+.+-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            468899999844   4888888889999999985

It contains a characteristic DLL sequence motif.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=89.51  E-value=8  Score=42.87  Aligned_cols=115  Identities=10%  Similarity=0.142  Sum_probs=77.9

Q ss_pred             EEEEEEccC-CCCEEEEEeCCCcEEEEeCCC-------C----e---------eeEEeecccccCeeEEEEe--CCCcEE
Q 005656            5 VTALAFSSD-GQPLLASGASSGVISIWNLEK-------R----R---------LQSVIREAHDNAIISLHFF--ANEPVL   61 (685)
Q Consensus         5 V~~l~fspd-g~~~latg~~dg~I~vwd~~~-------~----~---------~~~~~~~~h~~~V~~l~~s--p~~~~l   61 (685)
                      |+.|....= |..+|+.+..||.|.+|.+++       .    .         +...+  .-...+.+++++  ...++|
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~--~v~~SaWGLdIh~~~~~rlI  180 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL--RVGASAWGLDIHDYKKSRLI  180 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe--ecCCceeEEEEEecCcceEE
Confidence            455544432 234889999999999996531       0    0         11112  234578999998  778899


Q ss_pred             EEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCC---C---EEEEEeCCCceEEEEee
Q 005656           62 MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG---R---HILSAGQDRAFRLFSVI  122 (685)
Q Consensus        62 ~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~---~---~l~s~s~dg~i~vwd~~  122 (685)
                      |.++....|.||-+...+....... -..|...|-+|+|.++.   .   .+++++-.|.+.+|++.
T Consensus       181 AVSsNs~~VTVFaf~l~~~r~~~~~-s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~  246 (717)
T PF08728_consen  181 AVSSNSQEVTVFAFALVDERFYHVP-SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK  246 (717)
T ss_pred             EEecCCceEEEEEEecccccccccc-ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence            9998889999998776422211111 12367789999998752   2   67788889999999883

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=89.22  E-value=30  Score=35.95  Aligned_cols=15  Identities=0%  Similarity=-0.004  Sum_probs=10.8

Q ss_pred             CcEEEEECCCCcccc
Q 005656          224 GWIERFNLQSGISRG  238 (685)
Q Consensus       224 g~i~~~d~~~~~~~~  238 (685)
                      ..+.+||..+.....
T Consensus       189 ~~v~~YD~~t~~W~~  203 (376)
T PRK14131        189 KEVLSYDPSTNQWKN  203 (376)
T ss_pred             ceEEEEECCCCeeeE
Confidence            358899988876543

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=88.94  E-value=0.054  Score=55.09  Aligned_cols=142  Identities=13%  Similarity=0.052  Sum_probs=99.1

Q ss_pred             CCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEE-EEEeCCCeEEEEEcCCCeeE
Q 005656          250 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLL-ATVADDLVIRLFDVVALRMV  328 (685)
Q Consensus       250 ~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~I~i~d~~~~~~~  328 (685)
                      .+-.......|-+.+.-++.++.+..+..||-. ++.......++....++|..++..+ +.+-..+.+++||+.+...-
T Consensus        32 aalv~pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq  110 (615)
T KOG2247|consen   32 AALVGPIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ  110 (615)
T ss_pred             hhccccceeeEecCCCceehhhhhhHHHhhhhh-cceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH
Confidence            344445566777877778888888889999854 4555555666777888898888744 44556789999999764321


Q ss_pred             EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEe-eccceEEEEEcCCCCeEE
Q 005656          329 RKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH-VDVSITALSLSPNMDVLA  392 (685)
Q Consensus       329 ~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~-~~~~v~~v~~spdg~~La  392 (685)
                      ..-.+.+..-.-+.|++.+..++.+-..|.+.|++-.+.+.+-... +...+++++|.+.+..+.
T Consensus       111 qLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil  175 (615)
T KOG2247|consen  111 QLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVIL  175 (615)
T ss_pred             HHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeee
Confidence            1111111122227899999999999999999999988877766554 455599999988765443

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=88.88  E-value=39  Score=36.79  Aligned_cols=104  Identities=9%  Similarity=0.064  Sum_probs=59.0

Q ss_pred             EccCCCEEEEEecCCcEEEEECCCCcc--ccccccccccccCCC-CcCEEEEEEcCCC-CEEEEEE--CCCeEEEEECCC
Q 005656          210 ISACGNFAVLGTAGGWIERFNLQSGIS--RGSYLDMSERSNYAH-NGEVVGVACDSTN-TLMISAG--YHGDIKVWDFKG  283 (685)
Q Consensus       210 ~s~~g~~l~~g~~dg~i~~~d~~~~~~--~~~~~~~~~~~~~~h-~~~v~~l~~~~~~-~~l~s~s--~dg~i~iwd~~~  283 (685)
                      ...++..++.+..+|.++...+.....  .....        +. ....+++++..++ .+++.|+  .|+.+..|....
T Consensus       218 ~~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~--------g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~  289 (504)
T PF10433_consen  218 YDKDGDRILLQDEDGDLYLLTLDNDGGSISITYL--------GTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSN  289 (504)
T ss_dssp             SSTTSSEEEEEETTSEEEEEEEEEEEEEEEEEEE--------EE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESES
T ss_pred             ecCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEc--------CCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCC
Confidence            345678899999999999888765432  11111        22 3444566665554 3666776  455666666555


Q ss_pred             CceEEEeecCCceeEEEEeec----CC------EEEEEe---CCCeEEEEE
Q 005656          284 RDLKSRWEVGCSLVKIVYHRV----NG------LLATVA---DDLVIRLFD  321 (685)
Q Consensus       284 ~~~~~~~~~~~~i~~~~~~~~----~~------~l~~~~---~dg~I~i~d  321 (685)
                      -+.+..+..-+|+..+++.+.    ..      .+++++   .+|.++++.
T Consensus       290 l~~~~~~~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr  340 (504)
T PF10433_consen  290 LEVLDSLPNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR  340 (504)
T ss_dssp             EEEEEEE----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE
T ss_pred             cEEEEeccCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe
Confidence            566666776789999988642    11      444444   366787763

...

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=88.82  E-value=50  Score=37.99  Aligned_cols=74  Identities=16%  Similarity=0.166  Sum_probs=48.2

Q ss_pred             CcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecC------CCEEEEEeCCCceEEEEeecCceeeEec
Q 005656           58 EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN------GRHILSAGQDRAFRLFSVIQDQQSRELS  131 (685)
Q Consensus        58 ~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~------~~~l~s~s~dg~i~vwd~~~~~~~~~~~  131 (685)
                      ...++.+-..|.+..+..+..+ ....+.....-...|.|+++.++      .++++.++.|++++++.+........++
T Consensus       549 r~qiVvalSngelvyfe~d~sg-ql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls  627 (1205)
T KOG1898|consen  549 RRQIVVALSNGELVYFEGDVSG-QLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLS  627 (1205)
T ss_pred             ceEEEEEccCCeEEEEEeccCc-cceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEcc
Confidence            3345555556666666555332 22222233445678899999876      3679999999999999998666666654


Q ss_pred             h
Q 005656          132 Q  132 (685)
Q Consensus       132 ~  132 (685)
                      .
T Consensus       628 ~  628 (1205)
T KOG1898|consen  628 V  628 (1205)
T ss_pred             c
Confidence            3

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=88.82  E-value=29  Score=35.18  Aligned_cols=95  Identities=16%  Similarity=0.001  Sum_probs=45.6

Q ss_pred             CCCEEEEEec-----CCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCC----eEEEEECCC
Q 005656          213 CGNFAVLGTA-----GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG----DIKVWDFKG  283 (685)
Q Consensus       213 ~g~~l~~g~~-----dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg----~i~iwd~~~  283 (685)
                      +++..++|+.     ...+..||+.+.+....-. .      .........+...+++..+.|+.++    .+.+||..+
T Consensus       123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~-~------p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~  195 (323)
T TIGR03548       123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPD-F------PGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKK  195 (323)
T ss_pred             CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCC-C------CCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCC
Confidence            4555566653     2468889988765433210 0      0001111122223566777777654    356788877


Q ss_pred             CceEEEeec---CCce---eEE-EEeecCCEEEEEeCC
Q 005656          284 RDLKSRWEV---GCSL---VKI-VYHRVNGLLATVADD  314 (685)
Q Consensus       284 ~~~~~~~~~---~~~i---~~~-~~~~~~~~l~~~~~d  314 (685)
                      .+-...-..   ..+.   ... ....++.+++.|+.+
T Consensus       196 ~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~  233 (323)
T TIGR03548       196 NQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFN  233 (323)
T ss_pred             CeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence            653322111   1111   111 122356777777765

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.67  E-value=12  Score=39.19  Aligned_cols=29  Identities=17%  Similarity=0.027  Sum_probs=23.8

Q ss_pred             CCCeEEEEEccCCCEEEEEecCCcEEEEE
Q 005656          202 PTAVKACTISACGNFAVLGTAGGWIERFN  230 (685)
Q Consensus       202 ~~~v~~~~~s~~g~~l~~g~~dg~i~~~d  230 (685)
                      .-.|..+..++.|..++..+.+|.+.++=
T Consensus       103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeL  131 (741)
T KOG4460|consen  103 LFEVYQVLLSPTGSHVALIGIKGLMVMEL  131 (741)
T ss_pred             eEEEEEEEecCCCceEEEecCCeeEEEEc
Confidence            44578889999999999999999776653

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=88.17  E-value=55  Score=37.62  Aligned_cols=77  Identities=13%  Similarity=0.002  Sum_probs=53.7

Q ss_pred             CCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc----cccccc-------ccCCCCcCEEEEEEcCCCCEEEE
Q 005656          201 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY----LDMSER-------SNYAHNGEVVGVACDSTNTLMIS  269 (685)
Q Consensus       201 ~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~----~~~~~~-------~~~~h~~~v~~l~~~~~~~~l~s  269 (685)
                      ....|.+++...-+.++++...||+|.++|-.+-+.....    ......       -...+-..+..++|+|.+..++.
T Consensus       258 ~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~  337 (753)
T PF11635_consen  258 LNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQ  337 (753)
T ss_pred             cCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEE
Confidence            3567889999999999999999999999998876554433    111000       01112224556889999988888


Q ss_pred             EECCCeEE
Q 005656          270 AGYHGDIK  277 (685)
Q Consensus       270 ~s~dg~i~  277 (685)
                      -..+|.+.
T Consensus       338 ~~~~~~~~  345 (753)
T PF11635_consen  338 IDEDGKTK  345 (753)
T ss_pred             EecCCCce
Confidence            88888765

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=88.11  E-value=34  Score=35.09  Aligned_cols=219  Identities=14%  Similarity=0.100  Sum_probs=0.0

Q ss_pred             eEEEEcCCceEEEEEcCccccCceeecCCC-CCCCCeEEEEEccCCCEEEEEecC-----------CcEEEEECCCCccc
Q 005656          170 VVTCHMDTAQAYVWRLQNFVLGEHILRPCP-ENPTAVKACTISACGNFAVLGTAG-----------GWIERFNLQSGISR  237 (685)
Q Consensus       170 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~g~~d-----------g~i~~~d~~~~~~~  237 (685)
                      .+..+.....+..++.......-..+.+.+ ........+.+  +++..++|+.+           ..+..||+.+..-.
T Consensus        21 yv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~--~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~   98 (346)
T TIGR03547        21 YVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAI--DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQ   98 (346)
T ss_pred             EEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEEE--CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEe


Q ss_pred             cccccccccccCCCCcCEEEEEEc--CCCCEEEEEECC---------------------------------------CeE
Q 005656          238 GSYLDMSERSNYAHNGEVVGVACD--STNTLMISAGYH---------------------------------------GDI  276 (685)
Q Consensus       238 ~~~~~~~~~~~~~h~~~v~~l~~~--~~~~~l~s~s~d---------------------------------------g~i  276 (685)
                      ..-.        .......+.+..  -+++..+.|+.+                                       ..+
T Consensus        99 ~~~~--------~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  170 (346)
T TIGR03547        99 KLDT--------RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNV  170 (346)
T ss_pred             cCCC--------CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceE


Q ss_pred             EEEECCCCceEEEeecC--CceeEEEEeecCCEEEEEeCC------CeEEEEEc--C--CCeeEEEEec-----CCCCeE
Q 005656          277 KVWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADD------LVIRLFDV--V--ALRMVRKFEG-----HTDRIT  339 (685)
Q Consensus       277 ~iwd~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d------g~I~i~d~--~--~~~~~~~~~~-----h~~~I~  339 (685)
                      .+||..+.+-...-..+  ..........++++++.|+.+      ..+..|++  .  ....+..+..     |.+...
T Consensus       171 ~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~  250 (346)
T TIGR03547       171 LSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAG  250 (346)
T ss_pred             EEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccccccE


Q ss_pred             EEEEcCCCCEEEEEeCC----------------------CcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEe
Q 005656          340 DFCFSEDGKWLLSSGMD----------------------GSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHV  396 (685)
Q Consensus       340 ~l~~spdg~~l~s~s~D----------------------g~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~  396 (685)
                      ..+...++++.+.|+.+                      ..+.+||..+.+-...-..+.+ -...+..-+++++++|+.
T Consensus       251 ~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~  330 (346)
T TIGR03547       251 AFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLIGGE  330 (346)
T ss_pred             EeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCceeeEEEEcCCEEEEEecc


Q ss_pred             CC
Q 005656          397 DQ  398 (685)
Q Consensus       397 d~  398 (685)
                      +.
T Consensus       331 ~~  332 (346)
T TIGR03547       331 NS  332 (346)
T ss_pred             CC

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=87.84  E-value=22  Score=32.67  Aligned_cols=162  Identities=10%  Similarity=0.056  Sum_probs=93.0

Q ss_pred             CCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEE-EECCCeEEEEECCCCceEEEeecCCceeEEEE
Q 005656          223 GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS-AGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVY  301 (685)
Q Consensus       223 dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~  301 (685)
                      ...|++||+.+|+...+..-.+   .......++.     -+.++.. .=.+|.-..+|.++-+.+..+...+.-..++.
T Consensus        67 ~S~ir~~~L~~gq~~~s~~l~~---~~~FgEGit~-----~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGWgLt~  138 (262)
T COG3823          67 FSKIRVSDLTTGQEIFSEKLAP---DTVFGEGITK-----LGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGWGLTS  138 (262)
T ss_pred             cceeEEEeccCceEEEEeecCC---ccccccceee-----ccceEEEEEeccceeEEEChHHhhhhcccccCCcceeeec
Confidence            3479999999988765542110   0011111111     1233332 23578888899988887777766655555443


Q ss_pred             eecCCEEEEEeCCCeEEEEEcCCCeeEEEEe----c-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEee-
Q 005656          302 HRVNGLLATVADDLVIRLFDVVALRMVRKFE----G-HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV-  375 (685)
Q Consensus       302 ~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~----~-h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~-  375 (685)
                        |+..|..+....+++.-|.++-....+..    | .-..++.+.|- ||...|-.=.+..|..-+..+|+.+..+.. 
T Consensus       139 --d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS  215 (262)
T COG3823         139 --DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLS  215 (262)
T ss_pred             --CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEEEcc
Confidence              45557776666677777776644333322    2 11234445553 565555544555566667777877776643 


Q ss_pred             -----------c-cceEEEEEcCCCCeEEEEE
Q 005656          376 -----------D-VSITALSLSPNMDVLATAH  395 (685)
Q Consensus       376 -----------~-~~v~~v~~spdg~~Lat~~  395 (685)
                                 + .-.+.+++.|++..+..++
T Consensus       216 ~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         216 GLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             CCchhcCccccccccccceeecCcCCeEEEec
Confidence                       1 1267889999885555443

>PLN02193 nitrile-specifier protein

Probab=87.75  E-value=44  Score=36.00  Aligned_cols=151  Identities=7%  Similarity=-0.053  Sum_probs=74.5

Q ss_pred             CCCEEEEEecC-----CcEEEEECCCCcccccccccc-ccccCCCCcCEEEEEEcCCCCEEEEEECCC-----eEEEEEC
Q 005656          213 CGNFAVLGTAG-----GWIERFNLQSGISRGSYLDMS-ERSNYAHNGEVVGVACDSTNTLMISAGYHG-----DIKVWDF  281 (685)
Q Consensus       213 ~g~~l~~g~~d-----g~i~~~d~~~~~~~~~~~~~~-~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg-----~i~iwd~  281 (685)
                      ++...+.|+.+     ..+..||+.+........... ......|     +++. -++++++.|+.++     .+..||+
T Consensus       228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h-----~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~  301 (470)
T PLN02193        228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFH-----SMAA-DEENVYVFGGVSATARLKTLDSYNI  301 (470)
T ss_pred             CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccce-----EEEE-ECCEEEEECCCCCCCCcceEEEEEC
Confidence            45666676654     368899998765543211000 0000112     2222 2456666676543     4677887


Q ss_pred             CCCceEEEeec----CCceeEEEEeecCCEEEEEeCC----CeEEEEEcCCCeeEEEEec---CCCCeEEEEEcCCCCEE
Q 005656          282 KGRDLKSRWEV----GCSLVKIVYHRVNGLLATVADD----LVIRLFDVVALRMVRKFEG---HTDRITDFCFSEDGKWL  350 (685)
Q Consensus       282 ~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~d----g~I~i~d~~~~~~~~~~~~---h~~~I~~l~~spdg~~l  350 (685)
                      .+.+-...-..    .......+..-++++++.++.+    ..+.+||+.+.+-...-..   ........+..-+++++
T Consensus       302 ~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iy  381 (470)
T PLN02193        302 VDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIV  381 (470)
T ss_pred             CCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEE
Confidence            76553321110    0011111122357777777655    4689999987654322110   11111111222366777


Q ss_pred             EEEeCC--------------CcEEEEEcCCCce
Q 005656          351 LSSGMD--------------GSLRIWDVILARQ  369 (685)
Q Consensus       351 ~s~s~D--------------g~I~iwd~~~~~~  369 (685)
                      +.|+.+              ..+.+||+.+.+-
T Consensus       382 v~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W  414 (470)
T PLN02193        382 IFGGEIAMDPLAHVGPGQLTDGTFALDTETLQW  414 (470)
T ss_pred             EECCccCCccccccCccceeccEEEEEcCcCEE
Confidence            777743              2477888776543

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=87.65  E-value=0.059  Score=54.82  Aligned_cols=146  Identities=13%  Similarity=0.152  Sum_probs=100.4

Q ss_pred             eEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEE-EEECCCeEEEEECCC
Q 005656          205 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMI-SAGYHGDIKVWDFKG  283 (685)
Q Consensus       205 v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~s~dg~i~iwd~~~  283 (685)
                      .....|.+.+..+++++.+..+..||-..... ...         ...+....++|+.++..++ .+-..+.+.+||+.+
T Consensus        37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~~-le~---------n~tg~aldm~wDkegdvlavlAek~~piylwd~n~  106 (615)
T KOG2247|consen   37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQVI-LEL---------NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNS  106 (615)
T ss_pred             cceeeEecCCCceehhhhhhHHHhhhhhccee-ccc---------CCchhHhhhhhccccchhhhhhhcCCCeeechhhh
Confidence            44556777777799999888888888543322 211         3445666788888876544 445678999999975


Q ss_pred             CceEE-EeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 005656          284 RDLKS-RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRI  361 (685)
Q Consensus       284 ~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~i  361 (685)
                      ..-.. .......-.-..|++....++.+...|.+.||+..+.+.+...-.|..++++++|.+.+ +.+.++.|..+.+
T Consensus       107 eytqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~L~v  184 (615)
T KOG2247|consen  107 EYTQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNTLSV  184 (615)
T ss_pred             hhHHHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHHHHH
Confidence            42211 11112222337788888899999999999999988777666555599999999999976 4666666655444

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=87.15  E-value=64  Score=37.25  Aligned_cols=122  Identities=9%  Similarity=0.002  Sum_probs=74.5

Q ss_pred             CCCCeEEEEEcc-CCCEEEEEecCCcEEEEECCCCccccc--cc--c-cc-cc-ccCCCCcCEEEEEEcCCCCEEEEEEC
Q 005656          201 NPTAVKACTISA-CGNFAVLGTAGGWIERFNLQSGISRGS--YL--D-MS-ER-SNYAHNGEVVGVACDSTNTLMISAGY  272 (685)
Q Consensus       201 ~~~~v~~~~~s~-~g~~l~~g~~dg~i~~~d~~~~~~~~~--~~--~-~~-~~-~~~~h~~~v~~l~~~~~~~~l~s~s~  272 (685)
                      ...+...++|+| +...+++-...|...+|++..+.....  +.  . .. .. ........-..+.|.++...|+.++.
T Consensus       144 gg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r  223 (765)
T PF10214_consen  144 GGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR  223 (765)
T ss_pred             CCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC
Confidence            345678899998 556899999999999999932221111  10  0 00 00 00011234457888888777777764


Q ss_pred             CCeEEEEECCCCceEE---EeecCCceeEEEEeecCC-EEEEEeCCCeEEEEEcCC
Q 005656          273 HGDIKVWDFKGRDLKS---RWEVGCSLVKIVYHRVNG-LLATVADDLVIRLFDVVA  324 (685)
Q Consensus       273 dg~i~iwd~~~~~~~~---~~~~~~~i~~~~~~~~~~-~l~~~~~dg~I~i~d~~~  324 (685)
                       ..+.++|+.+.....   .-.....|..+.-+|... ++++- ....|..+|+..
T Consensus       224 -~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~  277 (765)
T PF10214_consen  224 -SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKS  277 (765)
T ss_pred             -CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccC
Confidence             678999998775533   222337788888888733 22222 236777778776

These proteins are found in fungi.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=87.04  E-value=18  Score=30.75  Aligned_cols=109  Identities=11%  Similarity=0.054  Sum_probs=69.5

Q ss_pred             EEEcCCCCEEEEEECCCeEEEEECCC--------CceEEEeecCCceeEEEEeec-----CCEEEEEeCCCeEEEEEcCC
Q 005656          258 VACDSTNTLMISAGYHGDIKVWDFKG--------RDLKSRWEVGCSLVKIVYHRV-----NGLLATVADDLVIRLFDVVA  324 (685)
Q Consensus       258 l~~~~~~~~l~s~s~dg~i~iwd~~~--------~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~~~dg~I~i~d~~~  324 (685)
                      -.|+.....|+.++.-|+|.|++...        ...+..+.....|++++-.+-     ...|++|+. ..+..||+..
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~   82 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVEN   82 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEccc
Confidence            34555556677888888999998663        335667777788888876652     347777765 5788999987


Q ss_pred             CeeEEEEecCCCCeEEEEEcC----CCCEEEEEeCCCcEEEEEcCCCce
Q 005656          325 LRMVRKFEGHTDRITDFCFSE----DGKWLLSSGMDGSLRIWDVILARQ  369 (685)
Q Consensus       325 ~~~~~~~~~h~~~I~~l~~sp----dg~~l~s~s~Dg~I~iwd~~~~~~  369 (685)
                      ..-+..-. -...|+++.+-.    +..+++.| .+..|.-||..-.+.
T Consensus        83 N~d~Fyke-~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~  129 (136)
T PF14781_consen   83 NSDLFYKE-VPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEI  129 (136)
T ss_pred             Cchhhhhh-CccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEE
Confidence            65543222 235577776632    23344444 466777777654443

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=86.84  E-value=42  Score=34.87  Aligned_cols=21  Identities=5%  Similarity=0.012  Sum_probs=12.0

Q ss_pred             CCCCEEEEEe-CCCcEEEEeCCC
Q 005656           13 DGQPLLASGA-SSGVISIWNLEK   34 (685)
Q Consensus        13 dg~~~latg~-~dg~I~vwd~~~   34 (685)
                      ++. +.+.|+ .+..+.++|+..
T Consensus        38 ~~~-iyv~gG~~~~~~~~~d~~~   59 (376)
T PRK14131         38 NNT-VYVGLGSAGTSWYKLDLNA   59 (376)
T ss_pred             CCE-EEEEeCCCCCeEEEEECCC
Confidence            455 444444 445577888763

>PLN02153 epithiospecifier protein

Probab=86.79  E-value=40  Score=34.50  Aligned_cols=151  Identities=8%  Similarity=-0.008  Sum_probs=70.1

Q ss_pred             CCCEEEEEecC-----CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC-----------CeE
Q 005656          213 CGNFAVLGTAG-----GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH-----------GDI  276 (685)
Q Consensus       213 ~g~~l~~g~~d-----g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d-----------g~i  276 (685)
                      +++..+.|+.+     ..+.+||+.+..-...- ....... .....-.+++. -+++.++.|+.+           ..+
T Consensus        85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~-~~~~~~~-p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v  161 (341)
T PLN02153         85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLT-KLDEEGG-PEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTI  161 (341)
T ss_pred             CCEEEEECCCCCCCccCcEEEEECCCCEEEEec-cCCCCCC-CCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceE
Confidence            45666777643     35888998876543211 0000000 00001112222 345666776643           247


Q ss_pred             EEEECCCCceEEEeecC----CceeEEEEeecCCEEEEEeCC-------------CeEEEEEcCCCeeEEEEe-c--C--
Q 005656          277 KVWDFKGRDLKSRWEVG----CSLVKIVYHRVNGLLATVADD-------------LVIRLFDVVALRMVRKFE-G--H--  334 (685)
Q Consensus       277 ~iwd~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~d-------------g~I~i~d~~~~~~~~~~~-~--h--  334 (685)
                      .+||..+.+-...-...    .........-++++++.++.+             ..+.+||..+.+-...-. +  .  
T Consensus       162 ~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~  241 (341)
T PLN02153        162 EAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSA  241 (341)
T ss_pred             EEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCC
Confidence            78888765433211111    111111122356666655432             468889988764322111 1  1  


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCC--------------CcEEEEEcCCCc
Q 005656          335 TDRITDFCFSEDGKWLLSSGMD--------------GSLRIWDVILAR  368 (685)
Q Consensus       335 ~~~I~~l~~spdg~~l~s~s~D--------------g~I~iwd~~~~~  368 (685)
                      ......+.+  ++++++.|+..              ..|..+|..+.+
T Consensus       242 r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~  287 (341)
T PLN02153        242 RSVFAHAVV--GKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLV  287 (341)
T ss_pred             cceeeeEEE--CCEEEEECcccCCccccccccccccccEEEEEcCccE
Confidence            111122222  56777777742              256777776543

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=86.74  E-value=41  Score=34.59  Aligned_cols=196  Identities=16%  Similarity=0.246  Sum_probs=104.8

Q ss_pred             EEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEe----CCCcE--EEEec-CC---CcEEEEEecCCCCCCceeE
Q 005656           17 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFF----ANEPV--LMSAS-AD---NSIKMWIFDTTDGDPRLLR   86 (685)
Q Consensus        17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~s----p~~~~--l~s~s-~D---~~v~iWd~~~~~~~~~~~~   86 (685)
                      +++....++-+.+||+..+... .+..+   .++.+..-    -+|+.  |+.++ .+   ++|++|.++...+   .+.
T Consensus        70 lIigTdK~~GL~VYdL~Gk~lq-~~~~G---r~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g---~L~  142 (381)
T PF02333_consen   70 LIIGTDKKGGLYVYDLDGKELQ-SLPVG---RPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG---ELT  142 (381)
T ss_dssp             EEEEEETTTEEEEEETTS-EEE-EE-SS----EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT---EEE
T ss_pred             eEEEEeCCCCEEEEcCCCcEEE-eecCC---CcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC---cce
Confidence            6666677888999999766554 44323   33333321    13432  33333 32   5799999986432   222


Q ss_pred             eccc-------CCCCCeEEEEec---CCC-EEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCcee
Q 005656           87 FRSG-------HSAPPLCIRFYA---NGR-HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI  155 (685)
Q Consensus        87 ~~~~-------h~~~v~~i~~~~---~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (685)
                      ....       ....+..+|+..   +|. +.+..+.+|.+..|.+.....-..-.                        
T Consensus       143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~------------------------  198 (381)
T PF02333_consen  143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSA------------------------  198 (381)
T ss_dssp             E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEE------------------------
T ss_pred             EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEee------------------------
Confidence            2221       112356777753   344 66677888988888875322100000                        


Q ss_pred             eeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCc
Q 005656          156 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI  235 (685)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~  235 (685)
                                            ..++-+                ...+.+..|.+.....+|++|-++--|..|+.....
T Consensus       199 ----------------------~lVR~f----------------~~~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~  240 (381)
T PF02333_consen  199 ----------------------TLVREF----------------KVGSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEG  240 (381)
T ss_dssp             ----------------------EEEEEE----------------E-SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC
T ss_pred             ----------------------EEEEEe----------------cCCCcceEEEEecccCCEEEecCccEEEEEecCCCC
Confidence                                  001111                123468888999999999999999999999886332


Q ss_pred             cc-cccccccccccCCCCcCEEEEEEc--CCC-CEEEEEE-CCCeEEEEECCC
Q 005656          236 SR-GSYLDMSERSNYAHNGEVVGVACD--STN-TLMISAG-YHGDIKVWDFKG  283 (685)
Q Consensus       236 ~~-~~~~~~~~~~~~~h~~~v~~l~~~--~~~-~~l~s~s-~dg~i~iwd~~~  283 (685)
                      .. ..+....  ........|-+++.-  +++ .+|+.++ .+++..+|+...
T Consensus       241 ~~~~~~v~~~--~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~  291 (381)
T PF02333_consen  241 GNDRTLVASA--DGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG  291 (381)
T ss_dssp             -S--EEEEEB--SSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred             CCcceeeecc--cccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence            21 1111000  111344567777764  333 3555444 677899999774

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PLN02153 epithiospecifier protein

Probab=86.57  E-value=41  Score=34.41  Aligned_cols=25  Identities=8%  Similarity=0.240  Sum_probs=15.9

Q ss_pred             CCCCEEEEEeCC-------CcEEEEeCCCCeee
Q 005656           13 DGQPLLASGASS-------GVISIWNLEKRRLQ   38 (685)
Q Consensus        13 dg~~~latg~~d-------g~I~vwd~~~~~~~   38 (685)
                      ++. +++.|+.+       ..+.+||+.+.+-.
T Consensus        32 ~~~-iyv~GG~~~~~~~~~~~~~~yd~~~~~W~   63 (341)
T PLN02153         32 GDK-LYSFGGELKPNEHIDKDLYVFDFNTHTWS   63 (341)
T ss_pred             CCE-EEEECCccCCCCceeCcEEEEECCCCEEE
Confidence            345 67777653       35788898876543

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=86.26  E-value=11  Score=38.55  Aligned_cols=163  Identities=10%  Similarity=0.062  Sum_probs=93.8

Q ss_pred             CCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccc-cccccccccCC-CCcCEE-EEEEcCCCCEEEEEECCCeE
Q 005656          200 ENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGS-YLDMSERSNYA-HNGEVV-GVACDSTNTLMISAGYHGDI  276 (685)
Q Consensus       200 ~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~-~~~~~~~~~~~-h~~~v~-~l~~~~~~~~l~s~s~dg~i  276 (685)
                      .....+..+-..|+|+.+++-+. ..+.++++.+...... +...    ..+ ....|+ .+..-..|.-+..++.||.|
T Consensus       218 ~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~d----spg~~~~~Vte~l~lL~Gg~SLLv~~~dG~v  292 (733)
T COG4590         218 VPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDD----SPGDSRHQVTEQLYLLSGGFSLLVVHEDGLV  292 (733)
T ss_pred             CCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhc----CCCchHHHHHHHHHHHhCceeEEEEcCCCce
Confidence            33566778889999999988766 6788888876543322 1100    001 001111 11122345567778888888


Q ss_pred             EEE-ECCCC-c----eEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCE
Q 005656          277 KVW-DFKGR-D----LKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKW  349 (685)
Q Consensus       277 ~iw-d~~~~-~----~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~  349 (685)
                      .-| |.+.+ .    .++.++.. .++..+.-..+.+-+++-+.+|++.++.....+.+-.-. --..+.-+++||.+.+
T Consensus       293 sQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~~~~~~~~~Sp~~~~  371 (733)
T COG4590         293 SQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER-AYQAPQLVAMSPNQAY  371 (733)
T ss_pred             eeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh-hhcCcceeeeCcccch
Confidence            777 44322 2    11222221 334333333344567777788888877655444332222 2235667899999999


Q ss_pred             EEEEeCCCcEEEEEcCCCce
Q 005656          350 LLSSGMDGSLRIWDVILARQ  369 (685)
Q Consensus       350 l~s~s~Dg~I~iwd~~~~~~  369 (685)
                      |++-. .|.|+++.+.+..+
T Consensus       372 Ll~e~-~gki~~~~l~Nr~P  390 (733)
T COG4590         372 LLSED-QGKIRLAQLENRNP  390 (733)
T ss_pred             heeec-CCceEEEEecCCCC
Confidence            98764 46699988876543

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=85.72  E-value=43  Score=33.90  Aligned_cols=107  Identities=7%  Similarity=0.035  Sum_probs=54.5

Q ss_pred             CCCEEEEEecC-----CcEEEEECCCCccc---cccccccccccCCCCcCEEEEEEcCCCCEEEEEEC-----CCeEEEE
Q 005656          213 CGNFAVLGTAG-----GWIERFNLQSGISR---GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-----HGDIKVW  279 (685)
Q Consensus       213 ~g~~l~~g~~d-----g~i~~~d~~~~~~~---~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-----dg~i~iw  279 (685)
                      ++...++|+.+     ..+..||+.+....   ......+.    ... .. +++. -+++..+.|+.     ...+..|
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~----~~~-~~-~~~~-~~~~iYv~GG~~~~~~~~~v~~y  144 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPF----TFE-NG-SACY-KDGTLYVGGGNRNGKPSNKSYLF  144 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCc----Ccc-Cc-eEEE-ECCEEEEEeCcCCCccCceEEEE
Confidence            55666777654     35778888766531   11111100    111 11 1222 24566666663     2358888


Q ss_pred             ECCCCceEEEeecC--CceeEEEEeecCCEEEEEeCCC----eEEEEEcCCCe
Q 005656          280 DFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADDL----VIRLFDVVALR  326 (685)
Q Consensus       280 d~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg----~I~i~d~~~~~  326 (685)
                      |+.+.+-...-..+  ......+...++++.+.|+.++    .+.+||..+.+
T Consensus       145 d~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       145 NLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             cCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence            88766543321111  1222233345677778877654    35688887754

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=85.54  E-value=86  Score=37.19  Aligned_cols=330  Identities=13%  Similarity=0.087  Sum_probs=0.0

Q ss_pred             eCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCc-------EEEEecCCCcEEEEEecCCCCCCceeEecccCCCC
Q 005656           22 ASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-------VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP   94 (685)
Q Consensus        22 ~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~-------~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~   94 (685)
                      +..+.+.|=. +..-.....-.||..+|.|..+.-.-.       .-++.+.||++.|=|+       ..++........
T Consensus       324 GnG~n~~it~-~Prvitt~mgdG~qR~veC~~C~G~a~~~~L~aPvala~a~DGSl~VGDf-------NyIRRI~~dg~v  395 (1899)
T KOG4659|consen  324 GNGGNRLITE-EPRVITTAMGDGHQRDVECPKCEGKADSISLFAPVALAYAPDGSLIVGDF-------NYIRRISQDGQV  395 (1899)
T ss_pred             cCCcceEeec-CCceEEEeccCcccccccCCCCCCccccceeeceeeEEEcCCCcEEEccc-------hheeeecCCCce


Q ss_pred             CeEEEEecC----CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcce
Q 005656           95 PLCIRFYAN----GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNV  170 (685)
Q Consensus        95 v~~i~~~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (685)
                      .+-+.....    .-+++..--||++.+-|..+.+..+.-+.........--..........|...-........+    
T Consensus       396 ~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~d----  471 (1899)
T KOG4659|consen  396 STILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQD----  471 (1899)
T ss_pred             EEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhccc----


Q ss_pred             EEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEE------------------EecCCcEEEEECC
Q 005656          171 VTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL------------------GTAGGWIERFNLQ  232 (685)
Q Consensus       171 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~------------------g~~dg~i~~~d~~  232 (685)
                                                   ..-.....++++.+|..-++                  |+..-+   |...
T Consensus       472 -----------------------------A~L~~PkGIa~dk~g~lYfaD~t~IR~iD~~giIstlig~~~~~---~~p~  519 (1899)
T KOG4659|consen  472 -----------------------------AQLIFPKGIAFDKMGNLYFADGTRIRVIDTTGIISTLIGTTPDQ---HPPR  519 (1899)
T ss_pred             -----------------------------ceeccCCceeEccCCcEEEecccEEEEeccCceEEEeccCCCCc---cCcc


Q ss_pred             CCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeE--------------
Q 005656          233 SGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVK--------------  298 (685)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~--------------  298 (685)
                      +......+..       -|-...+.++++|-.+.+..-..+-.+++=-...-..+.--..++.+..              
T Consensus       520 ~C~~~~kl~~-------~~leWPT~LaV~Pmdnsl~Vld~nvvlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl  592 (1899)
T KOG4659|consen  520 TCAQITKLVD-------LQLEWPTSLAVDPMDNSLLVLDTNVVLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTL  592 (1899)
T ss_pred             ccccccchhh-------eeeecccceeecCCCCeEEEeecceEEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhh


Q ss_pred             -----EEEeecCCEEEEEeC------------CCeEEEE---------------EcCCCeeEEEEecCCCCeEEEEEcCC
Q 005656          299 -----IVYHRVNGLLATVAD------------DLVIRLF---------------DVVALRMVRKFEGHTDRITDFCFSED  346 (685)
Q Consensus       299 -----~~~~~~~~~l~~~~~------------dg~I~i~---------------d~~~~~~~~~~~~h~~~I~~l~~spd  346 (685)
                           ++++++|.+.++-++            ||.|.++               |.-+++-...-.+|-+.+.++|.+||
T Consensus       593 ~~~r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPd  672 (1899)
T KOG4659|consen  593 LIQRDIAVGTDGALYVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPD  672 (1899)
T ss_pred             hhhhceeecCCceEEEEeccchhhhheEEeccCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCC


Q ss_pred             CCEEEEEeC--------------------------CCcEEEEEcCCCceeeEEeeccc--eEEEEE---cCCCCeEEEEE
Q 005656          347 GKWLLSSGM--------------------------DGSLRIWDVILARQIDAIHVDVS--ITALSL---SPNMDVLATAH  395 (685)
Q Consensus       347 g~~l~s~s~--------------------------Dg~I~iwd~~~~~~i~~~~~~~~--v~~v~~---spdg~~Lat~~  395 (685)
                      |...++-+.                          +..+++|+ ..|....+...-..  ...+.+   +++|..=....
T Consensus       673 g~v~IAD~gN~rIr~Vs~~~~~~~~sr~YEi~~p~~QE~Y~Fn-r~GqH~sTvsliTget~ynFtY~v~ss~~~lsei~~  751 (1899)
T KOG4659|consen  673 GDVIIADSGNSRIRKVSARMAKYDGSRTYEITDPERQEKYTFN-RHGQHSSTVSLITGETFYNFTYQVDSSIGMLSEITD  751 (1899)
T ss_pred             CcEEEecCCchhhhhhhhcccccCCCceeeccCcccceeEEEe-ccceeeeeEEEEeceeEEEEEEecCCCcchhhhhhh


Q ss_pred             eCCCeEEE
Q 005656          396 VDQNGVYL  403 (685)
Q Consensus       396 ~d~~~I~l  403 (685)
                      ..|+.++|
T Consensus       752 a~Gn~l~i  759 (1899)
T KOG4659|consen  752 ASGNVLRV  759 (1899)
T ss_pred             cCCcEEEE

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=85.42  E-value=4.4  Score=36.75  Aligned_cols=31  Identities=3%  Similarity=0.028  Sum_probs=25.4

Q ss_pred             CCCeEEEEecC------CCEEEEEeCCCceEEEEeec
Q 005656           93 APPLCIRFYAN------GRHILSAGQDRAFRLFSVIQ  123 (685)
Q Consensus        93 ~~v~~i~~~~~------~~~l~s~s~dg~i~vwd~~~  123 (685)
                      ..|.+++|||.      +..|++.+.+|.|.+|.-..
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            47899999994      34788889999999998654

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=85.40  E-value=3.5  Score=26.70  Aligned_cols=32  Identities=19%  Similarity=0.356  Sum_probs=25.3

Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCeeeEEeec
Q 005656           12 SDGQPLLASGASSGVISIWNLEKRRLQSVIRE   43 (685)
Q Consensus        12 pdg~~~latg~~dg~I~vwd~~~~~~~~~~~~   43 (685)
                      |+|+.++++...++.|.++|..+++.+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            57775555566789999999999988888773

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=85.28  E-value=4  Score=26.08  Aligned_cols=35  Identities=23%  Similarity=0.479  Sum_probs=0.0

Q ss_pred             EEEEecCCCCeEEEEEcCCCCEEE-EEeCC--CcEEEE
Q 005656          328 VRKFEGHTDRITDFCFSEDGKWLL-SSGMD--GSLRIW  362 (685)
Q Consensus       328 ~~~~~~h~~~I~~l~~spdg~~l~-s~s~D--g~I~iw  362 (685)
                      ++.+....+.-...+|||||++|+ ++..+  |.-.||
T Consensus         1 l~~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    1 LKQLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             -EEES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CcCcccCCccccCEEEecCCCEEEEEecCCCCCCcCEE

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=85.22  E-value=51  Score=34.93  Aligned_cols=195  Identities=13%  Similarity=0.145  Sum_probs=0.0

Q ss_pred             ccCeeEEEEeCCCcEEEEecCCCcEEEEEe-------cCCCCCCceeEec-ccCCCCCeEEEEecCCCEEEEEeCCCceE
Q 005656           46 DNAIISLHFFANEPVLMSASADNSIKMWIF-------DTTDGDPRLLRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFR  117 (685)
Q Consensus        46 ~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~-------~~~~~~~~~~~~~-~~h~~~v~~i~~~~~~~~l~s~s~dg~i~  117 (685)
                      .....+..+...|...++.  |+.+.+|++       ...    ..+... .++...+.++        ++.....|.|+
T Consensus        26 ~~~~~~gi~~e~g~Aw~~~--d~~l~vW~Y~~~~~s~~~~----~~~~~~~~~~~~~i~~v--------~lv~p~~G~v~   91 (422)
T PF08801_consen   26 QSPCSMGIFPEIGRAWIVV--DNRLYVWNYSSTQSSPNDG----SDFPLFDDGSSSSIPGV--------GLVKPKTGRVV   91 (422)
T ss_dssp             TTS-EEEEE-TTSEEEEEE--TTEEEEEE--SS--GG--E----EEEE-----------SE--------EEEE-TT-EEE
T ss_pred             ccceEEEEEcccCEEEEEE--CCEEEEEeccCCCCCcCcc----cccceecCCCCCCCceE--------EEEEcCCCCEE


Q ss_pred             EEEeecCceeeEechh----------hHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCc
Q 005656          118 LFSVIQDQQSRELSQR----------HVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN  187 (685)
Q Consensus       118 vwd~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  187 (685)
                      .|+-............          -.                                                    
T Consensus        92 f~~~I~~~l~~~t~~~i~l~gv~~~~l~----------------------------------------------------  119 (422)
T PF08801_consen   92 FWESISHLLVLATPSQISLLGVSYSELL----------------------------------------------------  119 (422)
T ss_dssp             EES-TT-TT--EEEE-----------------------------------------------------------------
T ss_pred             ecccchhhhhcCccccccccccceeeec----------------------------------------------------


Q ss_pred             cccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccc-------------------c
Q 005656          188 FVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERS-------------------N  248 (685)
Q Consensus       188 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~-------------------~  248 (685)
                                  ............+.+  +++++.+|+|.....+.......+.......                   .
T Consensus       120 ------------~~e~~~~~~~~~~~~--~I~~ts~GRif~~~~~~~~g~~~l~y~~~~~~~~~i~~~~~~~~~~~~p~~  185 (422)
T PF08801_consen  120 ------------SGELSTSLTNVEPSG--FIVSTSTGRIFFLGIRDSNGKYELSYQQLSGRCSKINHTSSSIFSSLLPSF  185 (422)
T ss_dssp             -----------------EEEEEEETTT--EEEEETT--EEEEEE-TTS-EEEEE-TT-----------------------
T ss_pred             ------------CCceEEECCCCceEE--EEEECCCCeEEEEeCCCCCCcEEEEEEcCcCCccccccccCceeccccCCc


Q ss_pred             CCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEe--------------------------ecCCceeEEEEe
Q 005656          249 YAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRW--------------------------EVGCSLVKIVYH  302 (685)
Q Consensus       249 ~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--------------------------~~~~~i~~~~~~  302 (685)
                      ......|..+++++..+.+++.+.+|.|.+|++..+......                          .....+.++...
T Consensus       186 ~~~~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ildi~~i  265 (422)
T PF08801_consen  186 SDPRPKIVQVAVDPSRRLLYTLTSDGSIQVWDLGPGGSTLVSKVDIQEIILSSLQSAIPRSASSSDLSSISFKILDIHPI  265 (422)
T ss_dssp             ------EEEEEEETTTTEEEEEESSE-EEEEEE-SS-EEEEEEEEHHHHHHHHHHHHHHTTSHHHHHTT-EEEEEEEEEE
T ss_pred             ccchhceeeEEecCCcCEEEEEeCCCcEEEEEEeCCCCceeeehhHHHHHHHHHHHhhhhhhhcccccCCCeEEEEEEEe


Q ss_pred             ecC---CEEEEEeCCCeEEEE
Q 005656          303 RVN---GLLATVADDLVIRLF  320 (685)
Q Consensus       303 ~~~---~~l~~~~~dg~I~i~  320 (685)
                      +.+   ..++++-.+...++|
T Consensus       266 ~~~~s~~~~Lva~t~~g~r~y  286 (422)
T PF08801_consen  266 SAGESSLLVLVAVTSNGCRLY  286 (422)
T ss_dssp             TTEEEEEEEEE-TTSSS-BEE
T ss_pred             CccCceeEEEEEeccCCcEEE

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=85.18  E-value=42  Score=33.31  Aligned_cols=167  Identities=10%  Similarity=0.083  Sum_probs=90.7

Q ss_pred             cEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCC-----CEEEEE-ECCCeEEEEECCCCceEEEeecC-----
Q 005656          225 WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-----TLMISA-GYHGDIKVWDFKGRDLKSRWEVG-----  293 (685)
Q Consensus       225 ~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-----~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~-----  293 (685)
                      .|.+||+.+++..+.+.-.....  ...+.+..+.++...     .++..+ +..+.|.++|+.+++..+.....     
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~--~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p  112 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIA--PPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDP  112 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS---TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-
T ss_pred             EEEEEECCCCcEEEEEECChHHc--ccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceec
Confidence            68889999998877664221111  245678888887732     233333 34568999999988765544321     


Q ss_pred             ---------------CceeEEEEee---cCCEEEEEeCCCeEEEEEcCC-----C---------eeEEEEecCCCCeEEE
Q 005656          294 ---------------CSLVKIVYHR---VNGLLATVADDLVIRLFDVVA-----L---------RMVRKFEGHTDRITDF  341 (685)
Q Consensus       294 ---------------~~i~~~~~~~---~~~~l~~~~~dg~I~i~d~~~-----~---------~~~~~~~~h~~~I~~l  341 (685)
                                     ..+..++.+|   +++.|+-+.-.+ -++|.+.+     .         +.+..+-........+
T Consensus       113 ~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~  191 (287)
T PF03022_consen  113 DAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGM  191 (287)
T ss_dssp             SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEE
T ss_pred             cccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceE
Confidence                           2344455544   445555444322 12222221     0         1122222122456778


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEEcCCC---ceeeEEe-ecc---ceEEEEEcC--CCCeEEEE
Q 005656          342 CFSEDGKWLLSSGMDGSLRIWDVILA---RQIDAIH-VDV---SITALSLSP--NMDVLATA  394 (685)
Q Consensus       342 ~~spdg~~l~s~s~Dg~I~iwd~~~~---~~i~~~~-~~~---~v~~v~~sp--dg~~Lat~  394 (685)
                      +++++|.+.++--..+.|..|+..+.   +....+. .+.   -+.++.+.+  +|.+-+.+
T Consensus       192 ~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  192 AIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             EEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             EECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence            99999988888889999999998752   1222332 222   277888877  55443333

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=85.04  E-value=3.9  Score=45.07  Aligned_cols=72  Identities=15%  Similarity=0.181  Sum_probs=44.6

Q ss_pred             ecCCEEEEEeCCCeEEEEEcCC----CeeEEEE-ec---------------------CCCCeEEEEEcC----CCCEEEE
Q 005656          303 RVNGLLATVADDLVIRLFDVVA----LRMVRKF-EG---------------------HTDRITDFCFSE----DGKWLLS  352 (685)
Q Consensus       303 ~~~~~l~~~~~dg~I~i~d~~~----~~~~~~~-~~---------------------h~~~I~~l~~sp----dg~~l~s  352 (685)
                      ++...++++..||.+.......    +...... ..                     ..+.+..+++++    +..+|++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            3566777777888777776653    2111111 10                     123456667766    6789999


Q ss_pred             EeCCCcEEEEEcCCCceeeEEe
Q 005656          353 SGMDGSLRIWDVILARQIDAIH  374 (685)
Q Consensus       353 ~s~Dg~I~iwd~~~~~~i~~~~  374 (685)
                      .+.|+++|+||+.+++++....
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEec
Confidence            9999999999999999976653

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	685
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		4e-11
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		1e-09
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		7e-09
2gnq_A	336	Structure Of Wdr5 Length = 336		7e-09
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		9e-09
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		1e-08
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		1e-08
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-08
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-08
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-08
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-08
2h9l_A	329	Wdr5delta23 Length = 329		2e-08
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-08
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-08
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-08
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-08
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		3e-08
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		3e-08
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		4e-08
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-06
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		6e-08
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		6e-08
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		6e-08
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		6e-08
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		7e-08
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		7e-08
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		8e-08
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		9e-08
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		9e-08
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		1e-07
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		6e-07
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		7e-05
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		7e-07
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		7e-07
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		8e-07
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		3e-06
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		3e-06
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		3e-06
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		2e-05
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		4e-05
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		4e-05
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		4e-05
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		5e-05
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		1e-04
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		1e-04
3jzn_A	366	Structure Of Eed In Apo Form Length = 366		2e-04
3iiy_A	365	Crystal Structure Of Eed In Complex With A Trimethy		2e-04
3iiw_A	365	Crystal Structure Of Eed In Complex With A Trimethy		2e-04
2qxv_A	361	Structural Basis Of Ezh2 Recognition By Eed Length		2e-04
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		2e-04
3jpx_A	402	Eed: A Novel Histone Trimethyllysine Binder Within		2e-04
3jpx_A	402	Eed: A Novel Histone Trimethyllysine Binder Within		8e-04
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		3e-04

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 83/190 (43%), Gaps = 18/190 (9%)
Query: 205 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 264
           V    +S  GNFAV  +    +  +NLQ+G  +  +L         H  +V+ VA    N
Sbjct: 70  VSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFL--------GHTKDVLSVAFSPDN 121
Query: 265 TLMISAGYHGDIKVWDFKG-------RDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVI 317
             ++S G    ++VW+ KG       R   + W    S V+        ++ +   D ++
Sbjct: 122 RQIVSGGRDNALRVWNVKGECMHTLSRGAHTDW---VSCVRFSPSLDAPVIVSGGWDNLV 178
Query: 318 RLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV 377
           +++D+   R+V   +GHT+ +T    S DG    SS  DG  R+WD+     +  +    
Sbjct: 179 KVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGA 238
Query: 378 SITALSLSPN 387
            I  +  SPN
Sbjct: 239 PINQICFSPN 248

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 95/206 (46%), Gaps = 16/206 (7%)
Query: 205 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 264
           V+   +S+ G FA+ G+  G +  ++L +G+S         R    H  +V+ VA    N
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVST--------RRFVGHTKDVLSVAFSLDN 484
Query: 265 TLMISAGYHGDIKVWDFKGRDLKSRWEVG------CSLVKIVYHRVNGLLATVADDLVIR 318
             ++SA     IK+W+  G    +  E G       S V+   + +   + + + D  ++
Sbjct: 485 RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVK 544
Query: 319 LFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS 378
           ++++   ++     GHT  ++    S DG    S G DG + +WD+   +++ ++  +  
Sbjct: 545 VWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSV 604
Query: 379 ITALSLSPNMDVLATAHVDQNGVYLW 404
           I AL  SPN   L  A   ++G+ +W
Sbjct: 605 IHALCFSPNRYWLCAAT--EHGIKIW 628

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 16/205 (7%)
Query: 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 296
           G+Y    E++   H   +  VA  S + L++SA     +K+WD   G+ LK+       +
Sbjct: 73  GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 132
Query: 297 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 356
               ++  + L+ + + D  +R++DV   + ++    H+D ++   F+ DG  ++SS  D
Sbjct: 133 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 192
Query: 357 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW---VNRCM-- 409
           G  RIWD    + +  +  D +  ++ +  SPN   +  A +D N + LW     +C+  
Sbjct: 193 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLWDYSKGKCLKT 251
Query: 410 FSGDSNID-------SYASGKEIVS 427
           ++G  N         S   GK IVS
Sbjct: 252 YTGHKNEKYCIFANFSVTGGKWIVS 276

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 16/205 (7%)
Query: 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 296
           G+Y    E++   H   +  VA  S + L++SA     +K+WD   G+ LK+       +
Sbjct: 75  GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 134
Query: 297 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 356
               ++  + L+ + + D  +R++DV   + ++    H+D ++   F+ DG  ++SS  D
Sbjct: 135 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 194
Query: 357 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW---VNRCM-- 409
           G  RIWD    + +  +  D +  ++ +  SPN   +  A +D N + LW     +C+  
Sbjct: 195 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLWDYSKGKCLKT 253
Query: 410 FSGDSNID-------SYASGKEIVS 427
           ++G  N         S   GK IVS
Sbjct: 254 YTGHKNEKYCIFANFSVTGGKWIVS 278

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 71/159 (44%), Gaps = 5/159 (3%)
Query: 250 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVK-IVYHRVNGLL 308
            H   V  V      ++M+SA     IKVWD++  D +   +     V+ I +     LL
Sbjct: 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 165
Query: 309 ATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR 368
           A+ + D+ I+L+D      +R   GH   ++      +G  ++S+  D ++++W+V    
Sbjct: 166 ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY 225
Query: 369 QIDAIHVDVSITALSLSPNMD--VLATAHVDQNGVYLWV 405
            +           + + PN D  ++A+   DQ  V +WV
Sbjct: 226 CVKTFTGHREWVRM-VRPNQDGTLIASCSNDQT-VRVWV 262

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 16/205 (7%)
Query: 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 296
           G+Y    E++   H   +  VA  S + L++SA     +K+WD   G+ LK+       +
Sbjct: 57  GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 116
Query: 297 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 356
               ++  + L+ + + D  +R++DV   + ++    H+D ++   F+ DG  ++SS  D
Sbjct: 117 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 176
Query: 357 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW---VNRCM-- 409
           G  RIWD    + +  +  D +  ++ +  SPN   +  A +D N + LW     +C+  
Sbjct: 177 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLWDYSKGKCLKT 235
Query: 410 FSGDSNID-------SYASGKEIVS 427
           ++G  N         S   GK IVS
Sbjct: 236 YTGHKNEKYCIFANFSVTGGKWIVS 260

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 16/205 (7%)
Query: 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 296
           G+Y    E++   H   +  VA  S + L++SA     +K+WD   G+ LK+       +
Sbjct: 51  GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 110
Query: 297 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 356
               ++  + L+ + + D  +R++DV   + ++    H+D ++   F+ DG  ++SS  D
Sbjct: 111 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 170
Query: 357 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW---VNRCM-- 409
           G  RIWD    + +  +  D +  ++ +  SPN   +  A +D N + LW     +C+  
Sbjct: 171 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLWDYSKGKCLKT 229
Query: 410 FSGDSNID-------SYASGKEIVS 427
           ++G  N         S   GK IVS
Sbjct: 230 YTGHKNEKYCIFANFSVTGGKWIVS 254

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 16/205 (7%)
Query: 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 296
           G+Y    E++   H   +  VA  S + L++SA     +K+WD   G+ LK+       +
Sbjct: 57  GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 116
Query: 297 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 356
               ++  + L+ + + D  +R++DV   + ++    H+D ++   F+ DG  ++SS  D
Sbjct: 117 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 176
Query: 357 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW---VNRCM-- 409
           G  RIWD    + +  +  D +  ++ +  SPN   +  A +D N + LW     +C+  
Sbjct: 177 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLWDYSKGKCLKT 235
Query: 410 FSGDSNID-------SYASGKEIVS 427
           ++G  N         S   GK IVS
Sbjct: 236 YTGHKNEKYCIFANFSVTGGKWIVS 260

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 16/205 (7%)
Query: 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 296
           G+Y    E++   H   +  VA  S + L++SA     +K+WD   G+ LK+       +
Sbjct: 51  GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 110
Query: 297 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 356
               ++  + L+ + + D  +R++DV   + ++    H+D ++   F+ DG  ++SS  D
Sbjct: 111 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 170
Query: 357 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW---VNRCM-- 409
           G  RIWD    + +  +  D +  ++ +  SPN   +  A +D N + LW     +C+  
Sbjct: 171 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLWDYSKGKCLKT 229
Query: 410 FSGDSNID-------SYASGKEIVS 427
           ++G  N         S   GK IVS
Sbjct: 230 YTGHKNEKYCIFANFSVTGGKWIVS 254

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 16/205 (7%)
Query: 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 296
           G+Y    E++   H   +  VA  S + L++SA     +K+WD   G+ LK+       +
Sbjct: 52  GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 111
Query: 297 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 356
               ++  + L+ + + D  +R++DV   + ++    H+D ++   F+ DG  ++SS  D
Sbjct: 112 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 171
Query: 357 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW---VNRCM-- 409
           G  RIWD    + +  +  D +  ++ +  SPN   +  A +D N + LW     +C+  
Sbjct: 172 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLWDYSKGKCLKT 230
Query: 410 FSGDSNID-------SYASGKEIVS 427
           ++G  N         S   GK IVS
Sbjct: 231 YTGHKNEKYCIFANFSVTGGKWIVS 255

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 16/205 (7%)
Query: 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 296
           G+Y    E++   H   +  VA  S + L++SA     +K+WD   G+ LK+       +
Sbjct: 47  GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 106
Query: 297 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 356
               ++  + L+ + + D  +R++DV   + ++    H+D ++   F+ DG  ++SS  D
Sbjct: 107 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 166
Query: 357 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW---VNRCM-- 409
           G  RIWD    + +  +  D +  ++ +  SPN   +  A +D N + LW     +C+  
Sbjct: 167 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLWDYSKGKCLKT 225
Query: 410 FSGDSNID-------SYASGKEIVS 427
           ++G  N         S   GK IVS
Sbjct: 226 YTGHKNEKYCIFANFSVTGGKWIVS 250

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 16/205 (7%)
Query: 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 296
           G+Y    E++   H   +  VA  S + L++SA     +K+WD   G+ LK+       +
Sbjct: 68  GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 127
Query: 297 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 356
               ++  + L+ + + D  +R++DV   + ++    H+D ++   F+ DG  ++SS  D
Sbjct: 128 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 187
Query: 357 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW---VNRCM-- 409
           G  RIWD    + +  +  D +  ++ +  SPN   +  A +D N + LW     +C+  
Sbjct: 188 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLWDYSKGKCLKT 246
Query: 410 FSGDSNID-------SYASGKEIVS 427
           ++G  N         S   GK IVS
Sbjct: 247 YTGHKNEKYCIFANFSVTGGKWIVS 271

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 16/205 (7%)
Query: 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 296
           G+Y    E++   H   +  VA  S + L++SA     +K+WD   G+ LK+       +
Sbjct: 56  GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 115
Query: 297 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 356
               ++  + L+ + + D  +R++DV   + ++    H+D ++   F+ DG  ++SS  D
Sbjct: 116 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 175
Query: 357 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW---VNRCM-- 409
           G  RIWD    + +  +  D +  ++ +  SPN   +  A +D N + LW     +C+  
Sbjct: 176 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLWDYSKGKCLKT 234
Query: 410 FSGDSNID-------SYASGKEIVS 427
           ++G  N         S   GK IVS
Sbjct: 235 YTGHKNEKYCIFANFSVTGGKWIVS 259

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 16/205 (7%)
Query: 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 296
           G+Y    E++   H   +  VA  S + L++SA     +K+WD   G+ LK+       +
Sbjct: 57  GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 116
Query: 297 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 356
               ++  + L+ + + D  +R++DV   + ++    H+D ++   F+ DG  ++SS  D
Sbjct: 117 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 176
Query: 357 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW---VNRCM-- 409
           G  RIWD    + +  +  D +  ++ +  SPN   +  A +D N + LW     +C+  
Sbjct: 177 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLWDYSKGKCLKT 235
Query: 410 FSGDSNID-------SYASGKEIVS 427
           ++G  N         S   GK IVS
Sbjct: 236 YTGHKNEKYCIFANFSVTGGKWIVS 260

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 16/205 (7%)
Query: 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 296
           G+Y    E++   H   +  VA  S + L++SA     +K+WD   G+ LK+       +
Sbjct: 50  GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 109
Query: 297 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 356
               ++  + L+ + + D  +R++DV   + ++    H+D ++   F+ DG  ++SS  D
Sbjct: 110 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 169
Query: 357 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW---VNRCM-- 409
           G  RIWD    + +  +  D +  ++ +  SPN   +  A +D N + LW     +C+  
Sbjct: 170 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLWDYSKGKCLKT 228
Query: 410 FSGDSNID-------SYASGKEIVS 427
           ++G  N         S   GK IVS
Sbjct: 229 YTGHKNEKYCIFANFSVTGGKWIVS 253

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 16/205 (7%)
Query: 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 296
           G+Y    E++   H   +  VA  S + L++SA     +K+WD   G+ LK+       +
Sbjct: 54  GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 297 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 356
               ++  + L+ + + D  +R++DV   + ++    H+D ++   F+ DG  ++SS  D
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 357 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW---VNRCM-- 409
           G  RIWD    + +  +  D +  ++ +  SPN   +  A +D N + LW     +C+  
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLWDYSKGKCLKT 232
Query: 410 FSGDSNID-------SYASGKEIVS 427
           ++G  N         S   GK IVS
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVS 257

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 16/205 (7%)
Query: 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 296
           G+Y    E++   H   +  VA  S + L++SA     +K+WD   G+ LK+       +
Sbjct: 54  GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 297 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 356
               ++  + L+ + + D  +R++DV   + ++    H+D ++   F+ DG  ++SS  D
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 357 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW---VNRCM-- 409
           G  RIWD    + +  +  D +  ++ +  SPN   +  A +D N + LW     +C+  
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLWDYSKGKCLKT 232
Query: 410 FSGDSNID-------SYASGKEIVS 427
           ++G  N         S   GK IVS
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVS 257

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 16/205 (7%)
Query: 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 296
           G+Y    E++   H   +  VA  S + L++SA     +K+WD   G+ LK+       +
Sbjct: 54  GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 297 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 356
               ++  + L+ + + D  +R++DV   + ++    H+D ++   F+ DG  ++SS  D
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 357 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW---VNRCM-- 409
           G  RIWD    + +  +  D +  ++ +  SPN   +  A +D N + LW     +C+  
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLWDYSKGKCLKT 232
Query: 410 FSGDSNID-------SYASGKEIVS 427
           ++G  N         S   GK IVS
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVS 257

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 64/116 (55%), Gaps = 8/116 (6%)
Query: 4   AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS 63
           +V  +AFS DGQ  +AS +    + +WN   + LQ++    H +++  + F  ++  + S
Sbjct: 387 SVRGVAFSPDGQ-TIASASDDKTVKLWNRNGQLLQTLT--GHSSSVWGVAFSPDDQTIAS 443
Query: 64  ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF 119
           AS D ++K+W     + + +LL+  +GHS+    + F  +G+ I SA  D+  +L+
Sbjct: 444 ASDDKTVKLW-----NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 494

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 84/171 (49%), Gaps = 4/171 (2%)
Query: 238 GSYLDMSERSNY-AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSL 296
           GS++ + ER+   AH+  V GVA       + SA     +K+W+  G+ L++      S+
Sbjct: 1   GSHMGVKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSV 60
Query: 297 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 356
             + +      +A+ +DD  ++L++    ++++   GH+  +    FS DG+ + S+  D
Sbjct: 61  WGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDD 119
Query: 357 GSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 407
            ++++W+              S+  ++ SP+   +A+A  D+  V LW NR
Sbjct: 120 KTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT-VKLW-NR 168

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 83/197 (42%), Gaps = 18/197 (9%)
Query: 205 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 264
           V    IS+ G FA+ G+  G +  ++L +G +         R    H  +V+ VA  S N
Sbjct: 89  VSDVVISSDGQFALSGSWDGTLRLWDLTTGTT--------TRRFVGHTKDVLSVAFSSDN 140
Query: 265 TLMISAGYHGDIKVWDFKG-------RDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVI 317
             ++S      IK+W+  G        +  S W    S V+   +  N ++ +   D ++
Sbjct: 141 RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW---VSCVRFSPNSSNPIIVSCGWDKLV 197
Query: 318 RLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV 377
           +++++   ++     GHT  +     S DG    S G DG   +WD+   + +  +    
Sbjct: 198 KVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD 257
Query: 378 SITALSLSPNMDVLATA 394
            I AL  SPN   L  A
Sbjct: 258 IINALCFSPNRYWLCAA 274

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 16/205 (7%)
Query: 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 296
           G+Y    E++   H   +  VA  S + L++SA     +K+WD   G+ LK+       +
Sbjct: 54  GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 297 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 356
               ++  + L+ + + D  +R++DV     ++    H+D ++   F+ DG  ++SS  D
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 357 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW---VNRCM-- 409
           G  RIWD    + +  +  D +  ++ +  SPN   +  A +D N + LW     +C+  
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLWDYSKGKCLKT 232
Query: 410 FSGDSNID-------SYASGKEIVS 427
           ++G  N         S   GK IVS
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVS 257

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 83/197 (42%), Gaps = 18/197 (9%)
Query: 205 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 264
           V    IS+ G FA+ G+  G +  ++L +G         + R    H  +V+ VA  S N
Sbjct: 66  VSDVVISSDGQFALSGSWDGTLRLWDLTTG--------TTTRRFVGHTKDVLSVAFSSDN 117
Query: 265 TLMISAGYHGDIKVWDFKG-------RDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVI 317
             ++S      IK+W+  G        +  S W    S V+   +  N ++ +   D ++
Sbjct: 118 RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW---VSCVRFSPNSSNPIIVSCGWDKLV 174
Query: 318 RLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV 377
           +++++   ++     GHT  +     S DG    S G DG   +WD+   + +  +    
Sbjct: 175 KVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD 234
Query: 378 SITALSLSPNMDVLATA 394
            I AL  SPN   L  A
Sbjct: 235 IINALCFSPNRYWLCAA 251

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 16/205 (7%)
Query: 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 296
           G+Y    E++   H   +  VA  S + L++SA     +K+WD   G+ LK+       +
Sbjct: 54  GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 297 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 356
               ++  + L+ + + D  +R++DV     ++    H+D ++   F+ DG  ++SS  D
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 357 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW---VNRCM-- 409
           G  RIWD    + +  +  D +  ++ +  SPN   +  A +D N + LW     +C+  
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NDLKLWDYSKGKCLKT 232
Query: 410 FSGDSNID-------SYASGKEIVS 427
           ++G  N         S   GK IVS
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVS 257

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 92/199 (46%), Gaps = 20/199 (10%)
Query: 205 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 264
           V+ CT++A G +A+  +    +  +++ +G +   ++         H  +V+ V  D   
Sbjct: 68  VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV--------GHKSDVMSVDIDKKA 119
Query: 265 TLMISAGYHGDIKVWDFKGRDLKS-----RWEVGCSLVKIVYHRV----NGLLATVADDL 315
           +++IS      IKVW  KG+ L +      W    S V++V +      +  + +  +D 
Sbjct: 120 SMIISGSRDKTIKVWTIKGQCLATLLGHNDW---VSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 316 VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV 375
           +++ +++   ++   F GH   I     S DG  + S+G DG + +W++   + +  +  
Sbjct: 177 MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236
Query: 376 DVSITALSLSPNMDVLATA 394
              + +L+ SPN   LA A
Sbjct: 237 QDEVFSLAFSPNRYWLAAA 255

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 92/199 (46%), Gaps = 20/199 (10%)
Query: 205 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 264
           V+ CT++A G +A+  +    +  +++ +G +   ++         H  +V+ V  D   
Sbjct: 68  VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV--------GHKSDVMSVDIDKKA 119
Query: 265 TLMISAGYHGDIKVWDFKGRDLKS-----RWEVGCSLVKIVYHRV----NGLLATVADDL 315
           +++IS      IKVW  KG+ L +      W    S V++V +      +  + +  +D 
Sbjct: 120 SMIISGSRDKTIKVWTIKGQCLATLLGHNDW---VSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 316 VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV 375
           +++ +++   ++   F GH   I     S DG  + S+G DG + +W++   + +  +  
Sbjct: 177 MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236
Query: 376 DVSITALSLSPNMDVLATA 394
              + +L+ SPN   LA A
Sbjct: 237 QDEVFSLAFSPNRYWLAAA 255

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 92/199 (46%), Gaps = 20/199 (10%)
Query: 205 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 264
           V+ CT++A G +A+  +    +  +++ +G +   ++         H  +V+ V  D   
Sbjct: 68  VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV--------GHKSDVMSVDIDKKA 119
Query: 265 TLMISAGYHGDIKVWDFKGRDLKS-----RWEVGCSLVKIVYHRV----NGLLATVADDL 315
           +++IS      IKVW  KG+ L +      W    S V++V +      +  + +  +D 
Sbjct: 120 SMIISGSRDKTIKVWTIKGQCLATLLGHNDW---VSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 316 VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV 375
           +++ +++   ++   F GH   I     S DG  + S+G DG + +W++   + +  +  
Sbjct: 177 MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236
Query: 376 DVSITALSLSPNMDVLATA 394
              + +L+ SPN   LA A
Sbjct: 237 QDEVFSLAFSPNRYWLAAA 255

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 92/199 (46%), Gaps = 20/199 (10%)
Query: 205 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 264
           V+ CT++A G +A+  +    +  +++ +G +   ++         H  +V+ V  D   
Sbjct: 68  VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV--------GHKSDVMSVDIDKKA 119
Query: 265 TLMISAGYHGDIKVWDFKGRDLKS-----RWEVGCSLVKIVYHRV----NGLLATVADDL 315
           +++IS      IKVW  KG+ L +      W    S V++V +      +  + +  +D 
Sbjct: 120 SMIISGSRDKTIKVWTIKGQCLATLLGHNDW---VSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 316 VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV 375
           +++ +++   ++   F GH   I     S DG  + S+G DG + +W++   + +  +  
Sbjct: 177 MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236
Query: 376 DVSITALSLSPNMDVLATA 394
              + +L+ SPN   LA A
Sbjct: 237 QDEVFSLAFSPNRYWLAAA 255

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 92/199 (46%), Gaps = 20/199 (10%)
Query: 205 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 264
           V+ CT++A G +A+  +    +  +++ +G +   ++         H  +V+ V  D   
Sbjct: 62  VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV--------GHKSDVMSVDIDKKA 113
Query: 265 TLMISAGYHGDIKVWDFKGRDLKS-----RWEVGCSLVKIVYHRV----NGLLATVADDL 315
           +++IS      IKVW  KG+ L +      W    S V++V +      +  + +  +D 
Sbjct: 114 SMIISGSRDKTIKVWTIKGQCLATLLGHNDW---VSQVRVVPNEKADDDSVTIISAGNDK 170
Query: 316 VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV 375
           +++ +++   ++   F GH   I     S DG  + S+G DG + +W++   + +  +  
Sbjct: 171 MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 230
Query: 376 DVSITALSLSPNMDVLATA 394
              + +L+ SPN   LA A
Sbjct: 231 QDEVFSLAFSPNRYWLAAA 249

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 8/172 (4%)
Query: 239 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCS--- 295
           S LD   R NY  + +++   C      +I  G    + +WD      + + E+  S   
Sbjct: 89  SQLDCLNRDNYIRSCKLLPDGC-----TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPA 143
Query: 296 LVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM 355
              +     + +  +   D  I ++D+    +VR+F+GHTD  +    S DG  L + G+
Sbjct: 144 CYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL 203
Query: 356 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 407
           D ++R WD+   RQ+        I +L   P  + LA      N   L VN+
Sbjct: 204 DNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK 255

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 22/123 (17%)
Query: 5   VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA 64
           + ++ FS DG+  LA+GA   +I IW++E R++  +I + H+  I SL +F +   L+S 
Sbjct: 126 IRSVCFSPDGK-FLATGAEDRLIRIWDIENRKI-VMILQGHEQDIYSLDYFPSGDKLVSG 183
Query: 65  SADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIR--------FYANGRHILSAGQDRAF 116
           S D ++++W              R+G  +  L I            +G++I +   DRA 
Sbjct: 184 SGDRTVRIW------------DLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAV 231
Query: 117 RLF 119
           R++
Sbjct: 232 RVW 234

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 50/104 (48%)
Query: 307 LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 366
            LAT A+D +IR++D+   ++V   +GH   I    +   G  L+S   D ++RIWD+  
Sbjct: 137 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT 196
Query: 367 ARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMF 410
            +    + ++  +T +++SP       A      V +W +   F
Sbjct: 197 GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 240

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 88/199 (44%), Gaps = 20/199 (10%)
Query: 205 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 264
           V+ CT++A G +A+  +    +  +++ +G +   ++         H  +V  V  D   
Sbjct: 68  VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV--------GHKSDVXSVDIDKKA 119
Query: 265 TLMISAGYHGDIKVWDFKGRDLKS-----RWEVGCSLVKIVYHRV----NGLLATVADDL 315
           + +IS      IKVW  KG+ L +      W    S V++V +      +  + +  +D 
Sbjct: 120 SXIISGSRDKTIKVWTIKGQCLATLLGHNDW---VSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 316 VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV 375
            ++ +++   ++   F GH   I     S DG  + S+G DG + +W++   +    +  
Sbjct: 177 XVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSA 236
Query: 376 DVSITALSLSPNMDVLATA 394
              + +L+ SPN   LA A
Sbjct: 237 QDEVFSLAFSPNRYWLAAA 255

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 76/173 (43%), Gaps = 25/173 (14%)
Query: 245  ERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS-----RWEVGCSLVKI 299
            ER    H G V+  A  S  T   S       K+W F   DL S     +   GC  V+ 
Sbjct: 1085 ERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSF---DLLSPLHELKGHNGC--VRC 1139
Query: 300  VYHRVNG-LLATVADDLVIRLFDVVALRMVRKF------EG---HTDRITDFCFSEDGKW 349
                ++G LLAT  D+  IR+++V   +++         EG   H   +TD CFS D K 
Sbjct: 1140 SAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKT 1199
Query: 350  LLSSGMDGSLRIWDVILARQIDAIHVD-VSITALSLSPNMDVLATAHVDQNGV 401
            L+S+G  G L+ W+V         + +  ++  + +SP+     T  VD  G+
Sbjct: 1200 LVSAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVT--VDNLGI 1248

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 76/173 (43%), Gaps = 25/173 (14%)
Query: 245  ERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS-----RWEVGCSLVKI 299
            ER    H G V+  A  S  T   S       K+W F   DL S     +   GC  V+ 
Sbjct: 1078 ERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSF---DLLSPLHELKGHNGC--VRC 1132
Query: 300  VYHRVNG-LLATVADDLVIRLFDVVALRMVRKF------EG---HTDRITDFCFSEDGKW 349
                ++G LLAT  D+  IR+++V   +++         EG   H   +TD CFS D K 
Sbjct: 1133 SAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKT 1192
Query: 350  LLSSGMDGSLRIWDVILARQIDAIHVD-VSITALSLSPNMDVLATAHVDQNGV 401
            L+S+G  G L+ W+V         + +  ++  + +SP+     T  VD  G+
Sbjct: 1193 LVSAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVT--VDNLGI 1241

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 11/100 (11%)
Query: 5   VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVLMS 63
           V  L+F+   + +LA+G++   +++W+L   +L+    E+H + I  +H+   NE +L S
Sbjct: 278 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILAS 337
Query: 64  ASADNSIKMWIF----------DTTDGDPRLLRFRSGHSA 93
           +  D  + +W            D  DG P LL    GH+A
Sbjct: 338 SGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTA 377

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 11/100 (11%)
Query: 5   VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVLMS 63
           V  L+F+   + +LA+G++   +++W+L   +L+    E+H + I  +H+   NE +L S
Sbjct: 278 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILAS 337
Query: 64  ASADNSIKMWIF----------DTTDGDPRLLRFRSGHSA 93
           +  D  + +W            D  DG P LL    GH+A
Sbjct: 338 SGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTA 377

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 70/163 (42%), Gaps = 23/163 (14%)
Query: 250 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG--------RDLKSRWEVGCSLVKIVY 301
            H  EV  VA    N  ++SAG   +IK+W+  G        ++  S W V C     + 
Sbjct: 116 GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDW-VSCVRYSPIM 174
Query: 302 HRVNGL------LATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM 355
              N +       A+V  D  +++++    ++   F+ H   +     S +GK++ + G 
Sbjct: 175 KSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGK 233
Query: 356 DGSLRIWDVI----LARQIDAIHVDVSITALSLSPNMDVLATA 394
           D  L IWD++      R+ DA     +I  ++ +P +  +A  
Sbjct: 234 DKKLLIWDILNLTYPQREFDA---GSTINQIAFNPKLQWVAVG 273

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 5   VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVLMS 63
           V  L+F+   + +LA+G++   +++W+L   +L+    E+H + I  + +   NE +L S
Sbjct: 280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 339
Query: 64  ASADNSIKMWIF----------DTTDGDPRLLRFRSGHSA 93
           +  D  + +W            D  DG P LL    GH+A
Sbjct: 340 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA 379

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 5   VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVLMS 63
           V  L+F+   + +LA+G++   +++W+L   +L+    E+H + I  + +   NE +L S
Sbjct: 284 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 343
Query: 64  ASADNSIKMWIF----------DTTDGDPRLLRFRSGHSA 93
           +  D  + +W            D  DG P LL    GH+A
Sbjct: 344 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA 383

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 5   VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVLMS 63
           V  L+F+   + +LA+G++   +++W+L   +L+    E+H + I  + +   NE +L S
Sbjct: 282 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 341
Query: 64  ASADNSIKMWIF----------DTTDGDPRLLRFRSGHSA 93
           +  D  + +W            D  DG P LL    GH+A
Sbjct: 342 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA 381

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 5   VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVLMS 63
           V  L+F+   + +LA+G++   +++W+L   +L+    E+H + I  + +   NE +L S
Sbjct: 276 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 335
Query: 64  ASADNSIKMWIF----------DTTDGDPRLLRFRSGHSA 93
           +  D  + +W            D  DG P LL    GH+A
Sbjct: 336 SGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTA 375

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 21  GASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 80
           G + G I + +     LQ  I +AH + I  L FF +   L+S+S D  +K+W     DG
Sbjct: 112 GTTEGDIKVLD-SNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIW--SVKDG 168
Query: 81  -DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL 118
            +PR L    GH A    I     GR++LSA  D   RL
Sbjct: 169 SNPRTL---IGHRATVTDIAIIDRGRNVLSASLDGTIRL 204

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 21  GASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 80
           G + G I + +     LQ  I +AH + I  L FF +   L+S+S D  +K+W     DG
Sbjct: 115 GTTEGDIKVLD-SNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIW--SVKDG 171
Query: 81  -DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL 118
            +PR L    GH A    I     GR++LSA  D   RL
Sbjct: 172 SNPRTL---IGHRATVTDIAIIDRGRNVLSASLDGTIRL 207

>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 11  SSDGQPLLASGASSGVISIWN-LEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADN 68
           S+   PLLA   S G+I I N +  + ++  +   H NAI  L F   +P +L+S S D+
Sbjct: 81  SNTSHPLLAVAGSRGIIRIINPITMQCIKHYV--GHGNAINELKFHPRDPNLLLSVSKDH 138
Query: 69  SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 121
           ++++W    TD    +     GH    L   +   G  I+S G D + +L+ +
Sbjct: 139 ALRLWNI-QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 190

>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 11  SSDGQPLLASGASSGVISIWN-LEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADN 68
           S+   PLLA   S G+I I N +  + ++  +   H NAI  L F   +P +L+S S D+
Sbjct: 80  SNTSHPLLAVAGSRGIIRIINPITMQCIKHYV--GHGNAINELKFHPRDPNLLLSVSKDH 137
Query: 69  SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 121
           ++++W    TD    +     GH    L   +   G  I+S G D + +L+ +
Sbjct: 138 ALRLWNI-QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 189

>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 11  SSDGQPLLASGASSGVISIWN-LEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADN 68
           S+   PLLA   S G+I I N +  + ++  +   H NAI  L F   +P +L+S S D+
Sbjct: 80  SNTSHPLLAVAGSRGIIRIINPITMQCIKHYV--GHGNAINELKFHPRDPNLLLSVSKDH 137
Query: 69  SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 121
           ++++W    TD    +     GH    L   +   G  I+S G D + +L+ +
Sbjct: 138 ALRLWNI-QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 189

>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 11  SSDGQPLLASGASSGVISIWN-LEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADN 68
           S+   PLLA   S G+I I N +  + ++  +   H NAI  L F   +P +L+S S D+
Sbjct: 76  SNTSHPLLAVAGSRGIIRIINPITMQCIKHYV--GHGNAINELKFHPRDPNLLLSVSKDH 133
Query: 69  SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 121
           ++++W    TD    +     GH    L   +   G  I+S G D + +L+ +
Sbjct: 134 ALRLWNI-QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 185

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 293 GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLS 352
           G  ++ I Y      LA+ A D +I +FD+   +++   EGH   I    FS D + L++
Sbjct: 164 GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVT 223
Query: 353 SGMDGSLRIWDV 364
           +  DG ++I+DV
Sbjct: 224 ASDDGYIKIYDV 235

>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 11  SSDGQPLLASGASSGVISIWN-LEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADN 68
           S+   PLLA   S G+I I N +  + ++  +   H NAI  L F   +P +L+S S D+
Sbjct: 117 SNTSHPLLAVAGSRGIIRIINPITMQCIKHYV--GHGNAINELKFHPRDPNLLLSVSKDH 174
Query: 69  SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 121
           ++++W    TD    +     GH    L   +   G  I+S G D + +L+ +
Sbjct: 175 ALRLWNI-QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 226

>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 80/171 (46%), Gaps = 15/171 (8%)
Query: 214 GNFAVLGTAGGWIERFNLQSGISRG------SYLDMSERSNYAHNGEVVGVACDSTNTLM 267
           G+  V  T G    R  L    S+G      SY+D     N+           ++++ L+
Sbjct: 69  GDPLVFATVGS--NRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYD--SNTSHPLL 124
Query: 268 ISAGYHGDIKVWD-FKGRDLKSRWEVGCSLVKIVYH-RVNGLLATVADDLVIRLFDVVAL 325
             AG  G I++ +    + +K     G ++ ++ +H R   LL +V+ D  +RL+++   
Sbjct: 125 AVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD 184
Query: 326 RMVRKF---EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI 373
            +V  F   EGH D +    +   G+ ++S GMD SL++W +   R ++AI
Sbjct: 185 TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI 235

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 8/153 (5%)
Query: 216 FAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD 275
           FA  G   G I  +N   G   G + D S + N AH+G V G+      T + SA     
Sbjct: 205 FASTG-GDGTIVLYNGVDGTKTGVFEDDSLK-NVAHSGSVFGLTWSPDGTKIASASADKT 262
Query: 276 IKVWDFKGRDLKSRWEVGCSL----VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKF 331
           IK+W+     ++    VG  +    + I++ +    L +++ +  I   +     + +  
Sbjct: 263 IKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ--ALVSISANGFINFVNPELGSIDQVR 320
Query: 332 EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 364
            GH   IT    S DGK L S+  +G +  WD+
Sbjct: 321 YGHNKAITALSSSADGKTLFSADAEGHINSWDI 353

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	685
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.98
3jro_A	753	Fusion protein of protein transport protein SEC13	99.98
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.97
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.95
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.95
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.95
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.94
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.93
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.93
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.93
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.93
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.92
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.92
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.91
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.91
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.91
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.91
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.91
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.91
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.9
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.9
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.9
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.89
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.89
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.88
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.88
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.87
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.87
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.86
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.85
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.85
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.85
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.85
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.84
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.84
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.83
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.82
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.81
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.81
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.79
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.78
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.78
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.77
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.76
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.76
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.76
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.75
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.75
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.75
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.73
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.73
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.72
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.71
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.7
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.7
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.7
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.7
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.69
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.69
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.69
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.68
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.68
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.67
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.66
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.64
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.64
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.64
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.63
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.62
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.6
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.6
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.59
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.58
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.58
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.54
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.49
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.49
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.49
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.48
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.48
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.48
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.44
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.44
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.43
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.43
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.43
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.42
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.39
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.39
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.38
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.37
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.36
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.36
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.35
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.35
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.33
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.33
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.33
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.3
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.27
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.24
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.23
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.21
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.17
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.17
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.17
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.15
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.15
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.14
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.14
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.11
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	99.09
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.09
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	99.08
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.03
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.98
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.94
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.9
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.89
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.88
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.88
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.87
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.87
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.85
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.79
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.78
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.75
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.75
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.69
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.69
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.69
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.67
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.67
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.65
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.62
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.61
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.61
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.6
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.6
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.57
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.56
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.55
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.52
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.51
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.5
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.49
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.48
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.45
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.42
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.42
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.36
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.34
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.34
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.32
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.3
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.28
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.25
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.24
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.23
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.21
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.21
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.2
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.19
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.12
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.07
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.07
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.02
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.97
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.97
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.86
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.8
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.71
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.67
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.64
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.63
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.61
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.6
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.54
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.49
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.48
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.47
3ott_A	758	Two-component system sensor histidine kinase; beta	97.44
3ott_A	758	Two-component system sensor histidine kinase; beta	97.41
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.39
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.37
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.32
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.31
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.29
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.28
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.28
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.25
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.19
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.18
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.13
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.1
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.06
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.97
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	96.92
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.85
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.8
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.77
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.58
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.58
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.55
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	96.51
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.46
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.45
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.4
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.4
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.28
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.09
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.08
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.88
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.84
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.57
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.06
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	94.61
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	94.23
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	92.07
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	91.45
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	91.37
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	90.12
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	89.92
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	87.93
1wp5_A	323	Topoisomerase IV; broken beta-propeller, hairpin-i	86.59
3l6v_A	370	GYRA, DNA gyrase subunit A; gyrase A C-terminal do	86.52
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	85.26
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	84.66
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	83.16
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	82.98
1zi0_A	307	DNA gyrase subunit A; beta pinwheel, topoisomerase	82.08
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	80.44

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=3.2e-47  Score=423.85  Aligned_cols=374  Identities=14%  Similarity=0.206  Sum_probs=301.8

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG   80 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~   80 (685)
                      |.+.|++++|+|++..+|++|+.|++|++||..++++...+. +|.+.|.+++|+|++++|++++.|++|++||+..+  
T Consensus       146 h~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~-~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g--  222 (611)
T 1nr0_A          146 QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG-EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG--  222 (611)
T ss_dssp             CSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--
T ss_pred             CCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeec-cccCceEEEEECCCCCEEEEEECCCcEEEEECCCC--
Confidence            788999999999997579999999999999999999998887 99999999999999999999999999999998766  


Q ss_pred             CCceeEecc-------cCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCc
Q 005656           81 DPRLLRFRS-------GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKP  153 (685)
Q Consensus        81 ~~~~~~~~~-------~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (685)
                        +.+..+.       +|...|.+++|+|+|++|++++.|++|++||+.+++....+.....              ....
T Consensus       223 --~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~--------------~~~~  286 (611)
T 1nr0_A          223 --TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR--------------IEDQ  286 (611)
T ss_dssp             --CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS--------------GGGC
T ss_pred             --cEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCC--------------ccce
Confidence              4444442       7999999999999999999999999999999998887766532100              0000


Q ss_pred             eeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCC
Q 005656          154 VIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS  233 (685)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~  233 (685)
                      ...+..      + ...+.....++.+++|+.....    ......+|...|.+++|+|+|+++++++.||.|++||+.+
T Consensus       287 ~~~~~~------~-~~~l~s~s~d~~i~~~~~~~~~----~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~  355 (611)
T 1nr0_A          287 QLGIIW------T-KQALVSISANGFINFVNPELGS----IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIST  355 (611)
T ss_dssp             EEEEEE------C-SSCEEEEETTCCEEEEETTTTE----EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             eEEEEE------c-CCEEEEEeCCCcEEEEeCCCCC----cceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Confidence            011111      1 2335555667889999987543    2223347889999999999999999999999999999988


Q ss_pred             Ccccccccccc----------------------------------c----------------------------------
Q 005656          234 GISRGSYLDMS----------------------------------E----------------------------------  245 (685)
Q Consensus       234 ~~~~~~~~~~~----------------------------------~----------------------------------  245 (685)
                      +.....+....                                  .                                  
T Consensus       356 ~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~  435 (611)
T 1nr0_A          356 GISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIA  435 (611)
T ss_dssp             CCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEE
T ss_pred             CceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEE
Confidence            75433220000                                  0                                  


Q ss_pred             ------cccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCce--EEEeecCCceeEEEEeecCCEEEEEeCCCeE
Q 005656          246 ------RSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDL--KSRWEVGCSLVKIVYHRVNGLLATVADDLVI  317 (685)
Q Consensus       246 ------~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I  317 (685)
                            .....|...+.+++|+|+++++++|+.|++|++||+.++..  .....+...|.+++|+|+|++|++++.|++|
T Consensus       436 ~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v  515 (611)
T 1nr0_A          436 IYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKV  515 (611)
T ss_dssp             EEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             EEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCE
Confidence                  00002345688999999999999999999999999987654  2345567899999999999999999999999


Q ss_pred             EEEEcCC-CeeEEE--EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc-ee-eEEeec--cceEEEEEcCCCCe
Q 005656          318 RLFDVVA-LRMVRK--FEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR-QI-DAIHVD--VSITALSLSPNMDV  390 (685)
Q Consensus       318 ~i~d~~~-~~~~~~--~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~-~i-~~~~~~--~~v~~v~~spdg~~  390 (685)
                      ++||+.+ ++.+..  +.+|...|++++|+|||++|++|+.|++|++||+.++. .+ ..+..|  ..|++++|+|++. 
T Consensus       516 ~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-  594 (611)
T 1nr0_A          516 IPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-  594 (611)
T ss_dssp             EEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-
T ss_pred             EEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-
Confidence            9999988 665543  34599999999999999999999999999999998865 33 444445  4599999999998 


Q ss_pred             EEEEEeCCCeEEEEEc
Q 005656          391 LATAHVDQNGVYLWVN  406 (685)
Q Consensus       391 Lat~~~d~~~I~lW~~  406 (685)
                      |++++.|+ .|++|+.
T Consensus       595 l~s~~~D~-~i~lW~~  609 (611)
T 1nr0_A          595 IVSAGQDS-NIKFWNV  609 (611)
T ss_dssp             EEEEETTS-CEEEEEC
T ss_pred             EEEecCCC-CEEEEec
Confidence            99999997 9999985

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.4e-45  Score=408.76  Aligned_cols=376  Identities=15%  Similarity=0.191  Sum_probs=296.1

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe--eeEEeecccccCeeEEEEeCCCcEEEEecCC----CcEEEEE
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR--LQSVIREAHDNAIISLHFFANEPVLMSASAD----NSIKMWI   74 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D----~~v~iWd   74 (685)
                      |++.|++++|+|||+ +||+|+.||+|+|||+.+++  ....+. +|.++|.+++|+|++++|++++.+    +.|++||
T Consensus        58 h~~~v~~~~~spdg~-~lasg~~d~~v~lWd~~~~~~~~~~~~~-~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd  135 (611)
T 1nr0_A           58 HSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILKTTIP-VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD  135 (611)
T ss_dssp             CSSCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEEEEEE-CSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT
T ss_pred             CCCceEEEEECCCCc-EEEEEeCCCCEEEeECCCCcceeeEeec-ccCCceEEEEECCCCCEEEEEECCCCceeEEEEee
Confidence            789999999999999 99999999999999997543  445666 899999999999999999998865    3566664


Q ss_pred             ecCCCCCCceeEecccCCCCCeEEEEecCCC-EEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCc
Q 005656           75 FDTTDGDPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKP  153 (685)
Q Consensus        75 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (685)
                        .+    .....+.+|...|++++|+|++. .|++++.|++|++||..+.+....+..                 ....
T Consensus       136 --~~----~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~-----------------H~~~  192 (611)
T 1nr0_A          136 --TG----TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE-----------------HTKF  192 (611)
T ss_dssp             --TC----CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECC-----------------CSSC
T ss_pred             --CC----CCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeecc-----------------ccCc
Confidence              44    34556789999999999999987 599999999999999877665555431                 1112


Q ss_pred             eeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeec---CCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEE
Q 005656          154 VIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR---PCPENPTAVKACTISACGNFAVLGTAGGWIERFN  230 (685)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d  230 (685)
                      +..+...    ++. ..++....++.+++|+............   ....|...|.+++|+|+|+++++|+.|+.|++||
T Consensus       193 V~~v~fs----pdg-~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd  267 (611)
T 1nr0_A          193 VHSVRYN----PDG-SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWN  267 (611)
T ss_dssp             EEEEEEC----TTS-SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEC----CCC-CEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence            2222211    122 3556667789999999876543222111   1126888999999999999999999999999999


Q ss_pred             CCCCccccccccc-----------------------------------cccccCCCCcCEEEEEEcCCCCEEEEEECCCe
Q 005656          231 LQSGISRGSYLDM-----------------------------------SERSNYAHNGEVVGVACDSTNTLMISAGYHGD  275 (685)
Q Consensus       231 ~~~~~~~~~~~~~-----------------------------------~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~  275 (685)
                      +.++.....+...                                   ......+|...|++++|+|++++|++++.|++
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~  347 (611)
T 1nr0_A          268 VATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGH  347 (611)
T ss_dssp             TTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             CCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCc
Confidence            9988765443210                                   01123479999999999999999999999999


Q ss_pred             EEEEECCCCceEEEe-----------------------------------------------------------------
Q 005656          276 IKVWDFKGRDLKSRW-----------------------------------------------------------------  290 (685)
Q Consensus       276 i~iwd~~~~~~~~~~-----------------------------------------------------------------  290 (685)
                      |++||+.++.....+                                                                 
T Consensus       348 v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~  427 (611)
T 1nr0_A          348 INSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAV  427 (611)
T ss_dssp             EEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEE
T ss_pred             EEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEE
Confidence            999998865433221                                                                 


Q ss_pred             ------------------ecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCee--EEEEecCCCCeEEEEEcCCCCEE
Q 005656          291 ------------------EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM--VRKFEGHTDRITDFCFSEDGKWL  350 (685)
Q Consensus       291 ------------------~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~--~~~~~~h~~~I~~l~~spdg~~l  350 (685)
                                        .+...+.+++|+|+|++|++|+.|++|++||+.++..  +.. .+|...|++++|||||++|
T Consensus       428 ~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~l  506 (611)
T 1nr0_A          428 AACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFL  506 (611)
T ss_dssp             EEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEE
T ss_pred             EEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEE
Confidence                              1113467899999999999999999999999988754  344 6899999999999999999


Q ss_pred             EEEeCCCcEEEEEcCC-CceeeE--Ee-eccceEEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656          351 LSSGMDGSLRIWDVIL-ARQIDA--IH-VDVSITALSLSPNMDVLATAHVDQNGVYLWVNRC  408 (685)
Q Consensus       351 ~s~s~Dg~I~iwd~~~-~~~i~~--~~-~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~  408 (685)
                      ++++.|++|++|++.+ ++++..  +. +...|++++|+|||++||+++.|+ .|++|+...
T Consensus       507 as~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~-~v~lW~~~~  567 (611)
T 1nr0_A          507 VATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDN-SVIVWNMNK  567 (611)
T ss_dssp             EEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTS-CEEEEETTC
T ss_pred             EEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCC-cEEEEECCC
Confidence            9999999999999988 665543  33 445599999999999999999997 999999653

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=4.8e-45  Score=404.64  Aligned_cols=357  Identities=22%  Similarity=0.399  Sum_probs=297.6

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG   80 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~   80 (685)
                      |.+.|++++|+|+|+ +|++|+.||.|++||. +++.+..+. +|...|.+++|+|+++.|++++.|++|++|+.+.   
T Consensus       220 ~~~~v~~~~~s~dg~-~l~~~~~d~~i~~w~~-~~~~~~~~~-~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~---  293 (577)
T 2ymu_A          220 HSSSVRGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG---  293 (577)
T ss_dssp             CSSCEEEEEECTTSS-CEEEEETTSCEEEECT-TSCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS---
T ss_pred             CCCCEEEEEECCCCC-EEEEEeCCCEEEEEeC-CCCEEEEEe-cCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC---
Confidence            678999999999998 8999999999999996 456677777 8999999999999999999999999999998643   


Q ss_pred             CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656           81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  160 (685)
Q Consensus        81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (685)
                        +.+..+.+|..+|.+++|+|++++|++++.||+|++||...... ..+..                 ...++..+.. 
T Consensus       294 --~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~-~~~~~-----------------~~~~v~~~~~-  352 (577)
T 2ymu_A          294 --QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHL-QTLTG-----------------HSSSVWGVAF-  352 (577)
T ss_dssp             --CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEE-EEECC-----------------CSSCEEEEEE-
T ss_pred             --cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCee-EEEeC-----------------CCCCEEEEEE-
Confidence              56677889999999999999999999999999999999754432 22211                 0112222111 


Q ss_pred             cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656          161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  240 (685)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~  240 (685)
                         .++. ..+.....++.+++|+....     .+.....+...|.+++|+|+|+++++|+.|+.|++||.. +.....+
T Consensus       353 ---s~~g-~~l~~~~~dg~v~~~~~~~~-----~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~~~~~~  422 (577)
T 2ymu_A          353 ---SPDG-QTIASASDDKTVKLWNRNGQ-----LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTL  422 (577)
T ss_dssp             ---CTTS-SEEEEEETTSEEEEEETTCC-----EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-CCEEEEE
T ss_pred             ---CCCC-CEEEEEeCCCEEEEEcCCCC-----EEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEe
Confidence               1222 34555667789999996532     222333678899999999999999999999999999964 4444443


Q ss_pred             ccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEE
Q 005656          241 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLF  320 (685)
Q Consensus       241 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~  320 (685)
                      .        +|...|++++|+|+++++++++.|++|++||...........+...+.+++|+|++++|++++.|+.|++|
T Consensus       423 ~--------~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw  494 (577)
T 2ymu_A          423 T--------GHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW  494 (577)
T ss_dssp             E--------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred             c--------CCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEE
Confidence            3        89999999999999999999999999999997554333334456899999999999999999999999999


Q ss_pred             EcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCC
Q 005656          321 DVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQN  399 (685)
Q Consensus       321 d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~  399 (685)
                      |. ++++++.+.+|...|++++|+|||++|++++.||.|++||. +++++..+..|.. |++++|+|||++|++++.|+ 
T Consensus       495 ~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~-  571 (577)
T 2ymu_A          495 NR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDK-  571 (577)
T ss_dssp             ET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTS-
T ss_pred             cC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC-
Confidence            95 68889999999999999999999999999999999999995 6788888886654 99999999999999999997 


Q ss_pred             eEEEEE
Q 005656          400 GVYLWV  405 (685)
Q Consensus       400 ~I~lW~  405 (685)
                      .|++|+
T Consensus       572 ~i~~Wd  577 (577)
T 2ymu_A          572 TVKLWN  577 (577)
T ss_dssp             CEEEEC
T ss_pred             EEEEeC
Confidence            999996

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.2e-45  Score=390.37  Aligned_cols=283  Identities=18%  Similarity=0.353  Sum_probs=263.1

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG   80 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~   80 (685)
                      |+++|++++|+|++. +|++|+.||.|+|||+.+++....+. +|.+.|.+++|+|++++|++|+.|++|++||+...  
T Consensus       107 h~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~~l~-~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~--  182 (410)
T 1vyh_C          107 HRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTLK-GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF--  182 (410)
T ss_dssp             CSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEEEC-CCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS--
T ss_pred             cCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEEEe-ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--
Confidence            889999999999998 99999999999999999999999998 99999999999999999999999999999999776  


Q ss_pred             CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656           81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  160 (685)
Q Consensus        81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (685)
                        .++..+.+|...|.+++|+|++++|++|+.|++|++||+.++.....+.                             
T Consensus       183 --~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~-----------------------------  231 (410)
T 1vyh_C          183 --ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT-----------------------------  231 (410)
T ss_dssp             --CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE-----------------------------
T ss_pred             --ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe-----------------------------
Confidence              6788889999999999999999999999999999999998877655543                             


Q ss_pred             cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656          161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  240 (685)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~  240 (685)
                                                             .|...+.+++++|+|+++++|+.||.|++||+.++.....+
T Consensus       232 ---------------------------------------~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~  272 (410)
T 1vyh_C          232 ---------------------------------------GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL  272 (410)
T ss_dssp             ---------------------------------------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             ---------------------------------------CCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEe
Confidence                                                   56788999999999999999999999999999998877665


Q ss_pred             ccccccccCCCCcCEEEEEEcCC--------------------CCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEE
Q 005656          241 LDMSERSNYAHNGEVVGVACDST--------------------NTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKI  299 (685)
Q Consensus       241 ~~~~~~~~~~h~~~v~~l~~~~~--------------------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~  299 (685)
                      .        +|...|.+++|+|+                    +.++++|+.||+|++||+.++..+..+..+ ..|.++
T Consensus       273 ~--------~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v  344 (410)
T 1vyh_C          273 R--------EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGV  344 (410)
T ss_dssp             C--------CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred             c--------CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEE
Confidence            4        89999999999996                    678999999999999999999988887654 789999


Q ss_pred             EEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005656          300 VYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI  365 (685)
Q Consensus       300 ~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~  365 (685)
                      +|+|++++|++|+.|+.|++||+.+++++..+.+|...|++++|+|++.+|++|+.||+|++|+++
T Consensus       345 ~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          345 LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             EECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            999999999999999999999999999999999999999999999999999999999999999863

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=4e-45  Score=376.45  Aligned_cols=284  Identities=17%  Similarity=0.360  Sum_probs=262.7

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG   80 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~   80 (685)
                      |.++|++++|+|||+ +|++|+.||.|+|||+.+++....+. .|...|.+++|+|++++|++++.|+.|++|++.....
T Consensus        54 H~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~  131 (340)
T 1got_B           54 HLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVHAIP-LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG  131 (340)
T ss_dssp             CSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEEEEE-CSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSB
T ss_pred             CCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcceEee-cCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCC
Confidence            889999999999999 99999999999999999999999988 8999999999999999999999999999999987655


Q ss_pred             CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656           81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  160 (685)
Q Consensus        81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (685)
                      ..+....+.+|...|.++.|++++. +++++.|++|++||+.+++....+.                             
T Consensus       132 ~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~-----------------------------  181 (340)
T 1got_B          132 NVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFT-----------------------------  181 (340)
T ss_dssp             SCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEEC-----------------------------
T ss_pred             cceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEc-----------------------------
Confidence            5566777889999999999998874 8999999999999998876655442                             


Q ss_pred             cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656          161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  240 (685)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~  240 (685)
                                                             .|...|.+++|+|+++++++|+.||.|++||+.++.....+
T Consensus       182 ---------------------------------------~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~  222 (340)
T 1got_B          182 ---------------------------------------GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF  222 (340)
T ss_dssp             ---------------------------------------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEE
T ss_pred             ---------------------------------------CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEE
Confidence                                                   67788999999999999999999999999999998877766


Q ss_pred             ccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC---CceeEEEEeecCCEEEEEeCCCeE
Q 005656          241 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVADDLVI  317 (685)
Q Consensus       241 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~dg~I  317 (685)
                      .        +|...|.+++|+|++++|++++.||+|++||+++++.+..+.+.   ..+.+++|+|++++|++|+.|+.|
T Consensus       223 ~--------~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i  294 (340)
T 1got_B          223 T--------GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNC  294 (340)
T ss_dssp             C--------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             c--------CCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeE
Confidence            4        89999999999999999999999999999999998887777654   479999999999999999999999


Q ss_pred             EEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005656          318 RLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD  363 (685)
Q Consensus       318 ~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd  363 (685)
                      ++||+.+++.+..+.+|.+.|++++|+|+|++|++|+.||+|++||
T Consensus       295 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          295 NVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            9999999999999999999999999999999999999999999996

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.4e-44  Score=368.79  Aligned_cols=283  Identities=17%  Similarity=0.338  Sum_probs=256.9

Q ss_pred             CCCcEEEEEEccC----CCCEEEEEeCCCcEEEEeCCCCee--eEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEE
Q 005656            1 MRGAVTALAFSSD----GQPLLASGASSGVISIWNLEKRRL--QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI   74 (685)
Q Consensus         1 h~~~V~~l~fspd----g~~~latg~~dg~I~vwd~~~~~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd   74 (685)
                      |+++|++++|+|+    +. +|+||+.||.|+|||+.+++.  ...+. +|...|.+++|+++++++++++.|++|++||
T Consensus        31 H~~~V~~v~~~~~~~~~~~-~l~tgs~D~~v~vW~~~~~~~~~~~~l~-gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd  108 (321)
T 3ow8_A           31 HDDAIWSVAWGTNKKENSE-TVVTGSLDDLVKVWKWRDERLDLQWSLE-GHQLGVVSVDISHTLPIAASSSLDAHIRLWD  108 (321)
T ss_dssp             SSSCEEEEEEC-------C-EEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             CCCcEEEEEEecCCCCCCC-EEEEEcCCCCEEEEECCCCCeeeeeeec-cCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            8899999999985    45 899999999999999987764  34565 9999999999999999999999999999999


Q ss_pred             ecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCce
Q 005656           75 FDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV  154 (685)
Q Consensus        75 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (685)
                      +.++    +.+..+..|...+.+++|+|++++|++++.||.|++|++.+++....+.                       
T Consensus       109 ~~~~----~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~-----------------------  161 (321)
T 3ow8_A          109 LENG----KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD-----------------------  161 (321)
T ss_dssp             TTTT----EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEE-----------------------
T ss_pred             CCCC----CEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEec-----------------------
Confidence            9876    6777788899999999999999999999999999999998776544432                       


Q ss_pred             eeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCC
Q 005656          155 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG  234 (685)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~  234 (685)
                                                                   .+...+.+++|+|+|+++++|+.||.|++||+.++
T Consensus       162 ---------------------------------------------~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~  196 (321)
T 3ow8_A          162 ---------------------------------------------TRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG  196 (321)
T ss_dssp             ---------------------------------------------CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             ---------------------------------------------CCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence                                                         44567999999999999999999999999999999


Q ss_pred             ccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeC
Q 005656          235 ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVAD  313 (685)
Q Consensus       235 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~  313 (685)
                      +....+.        +|...|.+++|+|++++|++++.||+|++||++++.....+..+ ..|.+++|+|++.+|++++.
T Consensus       197 ~~~~~~~--------~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~  268 (321)
T 3ow8_A          197 KLLHTLE--------GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSS  268 (321)
T ss_dssp             EEEEEEC--------CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             cEEEEEc--------ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeC
Confidence            8777664        89999999999999999999999999999999999888877654 78999999999999999999


Q ss_pred             CCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005656          314 DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI  365 (685)
Q Consensus       314 dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~  365 (685)
                      |++|++||+.+++++..+.+|...|++++|+|+|++|++++.||+|++||.+
T Consensus       269 D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          269 DKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             CCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            9999999999999999999999999999999999999999999999999975

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.6e-44  Score=381.78  Aligned_cols=287  Identities=22%  Similarity=0.359  Sum_probs=262.7

Q ss_pred             eEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceE
Q 005656           38 QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFR  117 (685)
Q Consensus        38 ~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~  117 (685)
                      ...+. +|.++|++++|+|++++|++|+.||+|++||+.++    .....+.+|...|.+++|+|++++|++|+.||+|+
T Consensus       101 ~~~l~-gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~----~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~  175 (410)
T 1vyh_C          101 KYALS-GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG----DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIK  175 (410)
T ss_dssp             SCEEE-CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTC----CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCC
T ss_pred             eEeec-ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence            34455 89999999999999999999999999999999877    56778889999999999999999999999999999


Q ss_pred             EEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecC
Q 005656          118 LFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRP  197 (685)
Q Consensus       118 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  197 (685)
                      +||+.+.+....+.                                                                  
T Consensus       176 iwd~~~~~~~~~~~------------------------------------------------------------------  189 (410)
T 1vyh_C          176 LWDFQGFECIRTMH------------------------------------------------------------------  189 (410)
T ss_dssp             EEETTSSCEEECCC------------------------------------------------------------------
T ss_pred             EEeCCCCceeEEEc------------------------------------------------------------------
Confidence            99997665443332                                                                  


Q ss_pred             CCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEE
Q 005656          198 CPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIK  277 (685)
Q Consensus       198 ~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~  277 (685)
                        .|...|.+++|+|+++++++|+.||.|++||+.++.....+.        +|...|.++.++|++.++++|+.||+|+
T Consensus       190 --~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~--------~h~~~v~~~~~~~~g~~l~s~s~D~~v~  259 (410)
T 1vyh_C          190 --GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT--------GHREWVRMVRPNQDGTLIASCSNDQTVR  259 (410)
T ss_dssp             --CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE--------CCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             --CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe--------CCCccEEEEEECCCCCEEEEEcCCCeEE
Confidence              678889999999999999999999999999999998877665        8999999999999999999999999999


Q ss_pred             EEECCCCceEEEeec-CCceeEEEEeec--------------------CCEEEEEeCCCeEEEEEcCCCeeEEEEecCCC
Q 005656          278 VWDFKGRDLKSRWEV-GCSLVKIVYHRV--------------------NGLLATVADDLVIRLFDVVALRMVRKFEGHTD  336 (685)
Q Consensus       278 iwd~~~~~~~~~~~~-~~~i~~~~~~~~--------------------~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~  336 (685)
                      +||+.++.....+.. ...+.+++|+|+                    +.+|++|+.|+.|++||+.+++++..+.+|..
T Consensus       260 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~  339 (410)
T 1vyh_C          260 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN  339 (410)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             EEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCC
Confidence            999999988877754 488999999996                    66899999999999999999999999999999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656          337 RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       337 ~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~~  406 (685)
                      .|++++|+|+|++|++|+.||+|++||+.+++++..+..|.. |++++|+|++.+|++++.|+ .|++|+.
T Consensus       340 ~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~-~i~vW~~  409 (410)
T 1vyh_C          340 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQ-TVKVWEC  409 (410)
T ss_dssp             CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTS-EEEEEC-
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCC-cEEEEeC
Confidence            999999999999999999999999999999999999986655 99999999999999999997 9999975

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.2e-44  Score=366.10  Aligned_cols=289  Identities=20%  Similarity=0.296  Sum_probs=258.4

Q ss_pred             eEEeecccccCeeEEEEeCC----CcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCC
Q 005656           38 QSVIREAHDNAIISLHFFAN----EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD  113 (685)
Q Consensus        38 ~~~~~~~h~~~V~~l~~sp~----~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d  113 (685)
                      ....+ +|.+.|++++|+|+    +.+|+||+.|++|++|++....  ......+.+|...|.+++|++++.++++++.|
T Consensus        25 ~~~~~-~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~--~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D  101 (321)
T 3ow8_A           25 FKQEQ-AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDER--LDLQWSLEGHQLGVVSVDISHTLPIAASSSLD  101 (321)
T ss_dssp             EEETT-SSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred             eeecc-cCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCC--eeeeeeeccCCCCEEEEEECCCCCEEEEEeCC
Confidence            34444 89999999999985    5699999999999999987652  13345678999999999999999999999999


Q ss_pred             CceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCce
Q 005656          114 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH  193 (685)
Q Consensus       114 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  193 (685)
                      ++|++||+.+++....+.                                                              
T Consensus       102 ~~i~lWd~~~~~~~~~~~--------------------------------------------------------------  119 (321)
T 3ow8_A          102 AHIRLWDLENGKQIKSID--------------------------------------------------------------  119 (321)
T ss_dssp             SEEEEEETTTTEEEEEEE--------------------------------------------------------------
T ss_pred             CcEEEEECCCCCEEEEEe--------------------------------------------------------------
Confidence            999999998877655543                                                              


Q ss_pred             eecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC
Q 005656          194 ILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH  273 (685)
Q Consensus       194 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d  273 (685)
                            .+...+.+++|+|+++++++|+.+|.|++|++.++.....+.        .|...|.+++|+|++++|++++.|
T Consensus       120 ------~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~--------~~~~~v~~~~~spdg~~lasg~~d  185 (321)
T 3ow8_A          120 ------AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD--------TRGKFILSIAYSPDGKYLASGAID  185 (321)
T ss_dssp             ------CCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEE--------CSSSCEEEEEECTTSSEEEEEETT
T ss_pred             ------CCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEec--------CCCceEEEEEECCCCCEEEEEcCC
Confidence                  445667889999999999999999999999999988776654        788899999999999999999999


Q ss_pred             CeEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEE
Q 005656          274 GDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLS  352 (685)
Q Consensus       274 g~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s  352 (685)
                      |.|++||+.+++.+..+..+ .+|.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|++++|+|++++|++
T Consensus       186 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s  265 (321)
T 3ow8_A          186 GIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVS  265 (321)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             CeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEE
Confidence            99999999999998888754 78999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCcEEEEEcCCCceeeEEeecc-ceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656          353 SGMDGSLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       353 ~s~Dg~I~iwd~~~~~~i~~~~~~~-~v~~v~~spdg~~Lat~~~d~~~I~lW~~  406 (685)
                      ++.|++|++||+.+++++..+..+. .|.+++|+|+|++|++++.|+ .|++|+.
T Consensus       266 ~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~-~i~vwd~  319 (321)
T 3ow8_A          266 SSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQ-EIHIYDC  319 (321)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTC-CEEEEEC
T ss_pred             EeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCC-eEEEEeC
Confidence            9999999999999999999887654 599999999999999999997 9999985

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.7e-43  Score=392.19  Aligned_cols=358  Identities=21%  Similarity=0.374  Sum_probs=293.8

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG   80 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~   80 (685)
                      |+++|+|++|||||+ +||+|+.||.|+|||. +++++..+. +|.+.|++++|+|++++|++++.|++|++||...   
T Consensus        15 H~~~V~~~a~spdg~-~las~~~d~~v~iWd~-~~~~~~~l~-gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~~---   88 (577)
T 2ymu_A           15 HSSSVRGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG---   88 (577)
T ss_dssp             CSSCEEEEEECTTSS-CEEEEETTSEEEEECT-TSCEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS---
T ss_pred             CCCcEEEEEECCCCC-EEEEEeCCCEEEEEEC-CCCEEEEEe-CCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCC---
Confidence            899999999999999 9999999999999995 678888888 9999999999999999999999999999999642   


Q ss_pred             CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656           81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  160 (685)
Q Consensus        81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (685)
                        +.+..+.+|..+|.+++|+|++++|++++.|+.+++|+...........                  ...++..... 
T Consensus        89 --~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~------------------~~~~v~~~~~-  147 (577)
T 2ymu_A           89 --QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG------------------HSSSVWGVAF-  147 (577)
T ss_dssp             --CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECC------------------CSSCEEEEEE-
T ss_pred             --CEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccC------------------CCCceeeeee-
Confidence              5677888999999999999999999999999999999975443221111                  0011111110 


Q ss_pred             cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656          161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  240 (685)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~  240 (685)
                         ..+ ...+........+.+|.........     ...+...+.+++++|+++++++|+.+|.|++||.. +.....+
T Consensus       148 ---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~-~~~~~~~  217 (577)
T 2ymu_A          148 ---SPD-GQTIASASDDKTVKLWNRNGQLLQT-----LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTL  217 (577)
T ss_dssp             ---CTT-SSCEEEEETTSEEEEECTTSCEEEE-----EECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-SCEEEEE
T ss_pred             ---ecC-Cccceecccccceeccccceeeeee-----ccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCC-CcEEEEE
Confidence               111 2234555666777888755433222     22667889999999999999999999999999964 4444443


Q ss_pred             ccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEee-cCCceeEEEEeecCCEEEEEeCCCeEEE
Q 005656          241 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE-VGCSLVKIVYHRVNGLLATVADDLVIRL  319 (685)
Q Consensus       241 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~I~i  319 (685)
                      .        +|...|.+++|+|+++++++++.|+.|++||... +.+..+. +...+.+++|+|+++.+++++.|+.|++
T Consensus       218 ~--------~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~-~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~  288 (577)
T 2ymu_A          218 T--------GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKL  288 (577)
T ss_dssp             E--------CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             e--------cCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC-CEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEE
Confidence            3        8999999999999999999999999999999754 4454444 4588999999999999999999999999


Q ss_pred             EEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEee-ccceEEEEEcCCCCeEEEEEeCC
Q 005656          320 FDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV-DVSITALSLSPNMDVLATAHVDQ  398 (685)
Q Consensus       320 ~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~-~~~v~~v~~spdg~~Lat~~~d~  398 (685)
                      ||. +++.+..+.+|...|++++|+|++++|++++.||+|++||+.... +..+.. ...|.+++|+|+|++|++++.|+
T Consensus       289 w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  366 (577)
T 2ymu_A          289 WNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH-LQTLTGHSSSVWGVAFSPDGQTIASASDDK  366 (577)
T ss_dssp             EET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE-EEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-eEEEeCCCCCEEEEEECCCCCEEEEEeCCC
Confidence            996 467788899999999999999999999999999999999986554 444544 45599999999999999999887


Q ss_pred             CeEEEEEcC
Q 005656          399 NGVYLWVNR  407 (685)
Q Consensus       399 ~~I~lW~~~  407 (685)
                       .|++|+..
T Consensus       367 -~v~~~~~~  374 (577)
T 2ymu_A          367 -TVKLWNRN  374 (577)
T ss_dssp             -EEEEEETT
T ss_pred             -EEEEEcCC
Confidence             99999843

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.4e-43  Score=357.17  Aligned_cols=282  Identities=18%  Similarity=0.256  Sum_probs=249.1

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG   80 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~   80 (685)
                      |++.|++++|+|+|+ +|++|+.||.|++||+.++..+..+. +|..+|.+++|+|++++|++|+.|++|++||+.++  
T Consensus        12 h~~~V~~~~fsp~~~-~l~s~~~dg~v~lWd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~--   87 (304)
T 2ynn_A           12 RSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVRSIQ-VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG--   87 (304)
T ss_dssp             ECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC--
T ss_pred             CCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCceeEEee-ccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCC--
Confidence            788999999999998 99999999999999999999999998 89999999999999999999999999999999877  


Q ss_pred             CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656           81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  160 (685)
Q Consensus        81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (685)
                        +.+..+.+|...|.+++|+|++++|++|+.||+|++||+.++.....                               
T Consensus        88 --~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~-------------------------------  134 (304)
T 2ynn_A           88 --EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ-------------------------------  134 (304)
T ss_dssp             --CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEE-------------------------------
T ss_pred             --cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhh-------------------------------
Confidence              67778889999999999999999999999999999999865421100                               


Q ss_pred             cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656          161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  240 (685)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~  240 (685)
                                                                                                      
T Consensus       135 --------------------------------------------------------------------------------  134 (304)
T 2ynn_A          135 --------------------------------------------------------------------------------  134 (304)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCcCEEEEEEcC-CCCEEEEEECCCeEEEEECCCCceEEEeec--CCceeEEEEee--cCCEEEEEeCCC
Q 005656          241 LDMSERSNYAHNGEVVGVACDS-TNTLMISAGYHGDIKVWDFKGRDLKSRWEV--GCSLVKIVYHR--VNGLLATVADDL  315 (685)
Q Consensus       241 ~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~i~~~~~~~--~~~~l~~~~~dg  315 (685)
                            ...+|...|.+++|+| ++..+++|+.||+|++||+.++.....+..  ...+..+.++|  ++.+|++|+.|+
T Consensus       135 ------~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~  208 (304)
T 2ynn_A          135 ------TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDL  208 (304)
T ss_dssp             ------EECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTS
T ss_pred             ------hhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCC
Confidence                  0117888999999998 578999999999999999987766555443  36788889887  677999999999


Q ss_pred             eEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeecc-ceEEEEEcCCCC--eEE
Q 005656          316 VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALSLSPNMD--VLA  392 (685)
Q Consensus       316 ~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~-~v~~v~~spdg~--~La  392 (685)
                      +|++||+.+++++..+.+|...|++++|+|++++|++|+.||+|++||+.+++++..+..+. .+.+++|+|++.  +++
T Consensus       209 ~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  288 (304)
T 2ynn_A          209 TIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIA  288 (304)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEE
T ss_pred             eEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEE
Confidence            99999999999999999999999999999999999999999999999999999999998664 499999999886  577


Q ss_pred             EEEeCCCeEEEEEcC
Q 005656          393 TAHVDQNGVYLWVNR  407 (685)
Q Consensus       393 t~~~d~~~I~lW~~~  407 (685)
                      +++.|  ++.+|+..
T Consensus       289 sg~~~--g~~~~~~~  301 (304)
T 2ynn_A          289 SGFDN--GFTVLSLG  301 (304)
T ss_dssp             EEETT--EEEEEECC
T ss_pred             EecCC--ceEEEEec
Confidence            76644  78888743

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.5e-43  Score=366.46  Aligned_cols=285  Identities=16%  Similarity=0.240  Sum_probs=258.7

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCC-
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD-   79 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~-   79 (685)
                      |+++|++++|+|+|+ +||||+.||.|+|||..+++....+. .|...|.+++|+|++.+|++++.|+.+++|++.... 
T Consensus        63 H~~~V~~~~~s~d~~-~l~s~s~Dg~v~vWd~~~~~~~~~~~-~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~  140 (354)
T 2pbi_B           63 HGNKVLCMDWCKDKR-RIVSSSQDGKVIVWDSFTTNKEHAVT-MPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKN  140 (354)
T ss_dssp             CSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEE-CSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTT
T ss_pred             CCCeEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCcceEEe-cCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccc
Confidence            889999999999998 99999999999999999999888887 899999999999999999999999999999986542 


Q ss_pred             -CCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeee
Q 005656           80 -GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD  158 (685)
Q Consensus        80 -~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (685)
                       ........+.+|...|.+++|+|++..|++++.||+|++||+.+++....+.                           
T Consensus       141 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~---------------------------  193 (354)
T 2pbi_B          141 ENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH---------------------------  193 (354)
T ss_dssp             CCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE---------------------------
T ss_pred             ccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc---------------------------
Confidence             2223455667899999999999999999999999999999998877655543                           


Q ss_pred             cccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEcc--CCCEEEEEecCCcEEEEECCCCcc
Q 005656          159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA--CGNFAVLGTAGGWIERFNLQSGIS  236 (685)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~g~~dg~i~~~d~~~~~~  236 (685)
                                                               .|...+.+++++|  +|+++++|+.||.|++||++++..
T Consensus       194 -----------------------------------------~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~  232 (354)
T 2pbi_B          194 -----------------------------------------GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC  232 (354)
T ss_dssp             -----------------------------------------CCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCE
T ss_pred             -----------------------------------------CCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcE
Confidence                                                     6678899999987  578999999999999999999988


Q ss_pred             ccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC---CceeEEEEeecCCEEEEEeC
Q 005656          237 RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVAD  313 (685)
Q Consensus       237 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~  313 (685)
                      ...+.        +|...|.+++|+|++.+|++++.|++|++||+++++....+..+   ..+.+++|+|++.+|++|+.
T Consensus       233 ~~~~~--------~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~  304 (354)
T 2pbi_B          233 VQAFE--------THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYN  304 (354)
T ss_dssp             EEEEC--------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEET
T ss_pred             EEEec--------CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEEC
Confidence            77664        89999999999999999999999999999999988877666543   47889999999999999999


Q ss_pred             CCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005656          314 DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD  363 (685)
Q Consensus       314 dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd  363 (685)
                      |+.|++||+.+++.+..+.+|.+.|++++|+|||++|++|+.||+|++|+
T Consensus       305 d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          305 DYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             TSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             CCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            99999999999999999999999999999999999999999999999996

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-43  Score=375.59  Aligned_cols=338  Identities=15%  Similarity=0.204  Sum_probs=283.7

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeC----CCCe------eeEEeec---------ccccCeeEEEEeCCCcEE
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNL----EKRR------LQSVIRE---------AHDNAIISLHFFANEPVL   61 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~----~~~~------~~~~~~~---------~h~~~V~~l~~sp~~~~l   61 (685)
                      |.++|++++|+|+|+.+||+|+.||.|++||+    .+++      ....+..         +|.+.|++++|+|++++|
T Consensus        44 ~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  123 (425)
T 1r5m_A           44 KLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSI  123 (425)
T ss_dssp             ECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEE
T ss_pred             ccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEE
Confidence            56899999999999778999999999999999    8887      4555441         168899999999999999


Q ss_pred             EEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhh
Q 005656           62 MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARK  141 (685)
Q Consensus        62 ~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  141 (685)
                      ++++.||.|++|+. .+    ..+..+.+|..+|.+++|+|++++|++++.||.|++||+.+++....+.........  
T Consensus       124 ~~~~~dg~i~i~~~-~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--  196 (425)
T 1r5m_A          124 VTGVENGELRLWNK-TG----ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSS--  196 (425)
T ss_dssp             EEEETTSCEEEEET-TS----CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC--------
T ss_pred             EEEeCCCeEEEEeC-CC----CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccc--
Confidence            99999999999982 22    567778899999999999999999999999999999999888766655321110000  


Q ss_pred             ccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe
Q 005656          142 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT  221 (685)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~  221 (685)
                                                                         ............+.+++|++++ .+++++
T Consensus       197 ---------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  224 (425)
T 1r5m_A          197 ---------------------------------------------------INAENHSGDGSLGVDVEWVDDD-KFVIPG  224 (425)
T ss_dssp             ------------------------------------------------------------CCCBSCCEEEETT-EEEEEC
T ss_pred             ---------------------------------------------------eeeccccCCcceeeEEEEcCCC-EEEEEc
Confidence                                                               0000000223347888898875 588999


Q ss_pred             cCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEee-cCCceeEEE
Q 005656          222 AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE-VGCSLVKIV  300 (685)
Q Consensus       222 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~i~~~~  300 (685)
                      .+|.|++||+.++.....+.        .|...|.+++|+|+++++++++.||.|++||+.+++....+. +...+.+++
T Consensus       225 ~~g~i~~~d~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~  296 (425)
T 1r5m_A          225 PKGAIFVYQITEKTPTGKLI--------GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSAS  296 (425)
T ss_dssp             GGGCEEEEETTCSSCSEEEC--------CCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEE
T ss_pred             CCCeEEEEEcCCCceeeeec--------cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEE
Confidence            99999999999987766654        899999999999999999999999999999999988887776 458999999


Q ss_pred             EeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc------------
Q 005656          301 YHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR------------  368 (685)
Q Consensus       301 ~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~------------  368 (685)
                      |+|++ ++++++.|+.|++||+.+++.+..+..|...|++++|+|++++|++++.||.|++||+.++.            
T Consensus       297 ~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~  375 (425)
T 1r5m_A          297 WVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDG  375 (425)
T ss_dssp             EETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC-----------
T ss_pred             ECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeeccccc
Confidence            99999 99999999999999999999999999999999999999999999999999999999999988            


Q ss_pred             --------eeeEEeec--c-ceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          369 --------QIDAIHVD--V-SITALSLSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       369 --------~i~~~~~~--~-~v~~v~~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                              .+..+..+  . .|++++|+|++++|++++.|+ .|++|+.+
T Consensus       376 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~iw~~~  424 (425)
T 1r5m_A          376 ILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQ-EGSVVAIP  424 (425)
T ss_dssp             ---CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSS-CCEEEECC
T ss_pred             ccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCc-eEEEEeec
Confidence                    78888776  5 799999999999999999997 89999864

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=5.3e-43  Score=359.78  Aligned_cols=326  Identities=12%  Similarity=0.198  Sum_probs=284.2

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG   80 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~   80 (685)
                      |.++|.+++|+|||+ +++++..++.+.+|+........... +|...|++++|+|++++|++++ ||.|++|++..+..
T Consensus         8 ~~~~v~~~~~s~dg~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~   84 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQ-MQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGN   84 (337)
T ss_dssp             EEEECCEEEECSSSC-EEECCCCTTSSSSTTCCSEEEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTC
T ss_pred             cCCceeEEEECCCCC-EEEeecCCCcEeccccCCccccceec-cCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCc
Confidence            346799999999999 88888877778788766655554554 7999999999999999999999 99999999987643


Q ss_pred             CCceeEe--cccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeee
Q 005656           81 DPRLLRF--RSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD  158 (685)
Q Consensus        81 ~~~~~~~--~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (685)
                      .. .+..  ..+|..+|.+++|+|++++|++++.||.|++||+.+++......                           
T Consensus        85 ~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~---------------------------  136 (337)
T 1gxr_A           85 KS-PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAE---------------------------  136 (337)
T ss_dssp             CS-CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEE---------------------------
T ss_pred             ee-eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeee---------------------------
Confidence            22 2222  23799999999999999999999999999999997765211110                           


Q ss_pred             cccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccc
Q 005656          159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG  238 (685)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~  238 (685)
                                                             ...+...+.+++|+|+++++++++.+|.|++||+.++....
T Consensus       137 ---------------------------------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~  177 (337)
T 1gxr_A          137 ---------------------------------------LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR  177 (337)
T ss_dssp             ---------------------------------------EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             ---------------------------------------cccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceee
Confidence                                                   00556789999999999999999999999999999988776


Q ss_pred             ccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEE
Q 005656          239 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIR  318 (685)
Q Consensus       239 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~  318 (685)
                      .+.        .|...|.+++|+|+++++++++.||.|++||+++++....+.+...+.+++|+|+++++++++.++.|+
T Consensus       178 ~~~--------~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~  249 (337)
T 1gxr_A          178 QFQ--------GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVE  249 (337)
T ss_dssp             EEC--------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             eee--------cccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEE
Confidence            654        799999999999999999999999999999999999999998889999999999999999999999999


Q ss_pred             EEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCC
Q 005656          319 LFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ  398 (685)
Q Consensus       319 i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~  398 (685)
                      +||+.+++.. .+.+|...|++++|+|++++|++++.||.|++||+.+++.+....+...+++++|+|++++|++++.|+
T Consensus       250 ~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  328 (337)
T 1gxr_A          250 VLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDK  328 (337)
T ss_dssp             EEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTS
T ss_pred             EEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCC
Confidence            9999988754 577899999999999999999999999999999999999987777778899999999999999999987


Q ss_pred             CeEEEEEc
Q 005656          399 NGVYLWVN  406 (685)
Q Consensus       399 ~~I~lW~~  406 (685)
                       .|++|+.
T Consensus       329 -~i~iw~~  335 (337)
T 1gxr_A          329 -KATVYEV  335 (337)
T ss_dssp             -CEEEEEE
T ss_pred             -eEEEEEE
Confidence             9999984

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1e-43  Score=371.83  Aligned_cols=296  Identities=16%  Similarity=0.279  Sum_probs=259.6

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCC-
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD-   79 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~-   79 (685)
                      |+++|++++|+|+|+ +|++|+.||+|+|||+.+++....+. +|...|.+++|+|++++|++|+.|+.+++|++.... 
T Consensus        65 H~~~V~~~~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~~~-~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~  142 (380)
T 3iz6_a           65 HSGKVYSLDWTPEKN-WIVSASQDGRLIVWNALTSQKTHAIK-LHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQAD  142 (380)
T ss_dssp             CSSCEEEEEECTTSS-CEEEEETTSEEEEEETTTTEEEEEEE-CCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSS
T ss_pred             cccEEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCccceEEe-cCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCcc
Confidence            889999999999998 99999999999999999999999998 999999999999999999999999999999987532 


Q ss_pred             --CCCceeEecccCCCCCeEEEEecC-CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceee
Q 005656           80 --GDPRLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA  156 (685)
Q Consensus        80 --~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (685)
                        +.......+.+|.+.|.++.|+|+ +..|++|+.|++|++||+.+++....+...                       
T Consensus       143 ~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~-----------------------  199 (380)
T 3iz6_a          143 RDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSE-----------------------  199 (380)
T ss_dssp             CCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCC-----------------------
T ss_pred             ccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecc-----------------------
Confidence              223445667899999999999997 557999999999999999887765544210                       


Q ss_pred             eecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEcc-CCCEEEEEecCCcEEEEECCCC-
Q 005656          157 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQSG-  234 (685)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~~~d~~~~-  234 (685)
                                                              ....|...+.++++++ +++++++|+.||.|++||++.. 
T Consensus       200 ----------------------------------------~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~  239 (380)
T 3iz6_a          200 ----------------------------------------FPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS  239 (380)
T ss_dssp             ----------------------------------------SSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC
T ss_pred             ----------------------------------------cCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC
Confidence                                                    0116778899999987 8899999999999999999843 


Q ss_pred             ccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC--------CceeEEEEeecCC
Q 005656          235 ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--------CSLVKIVYHRVNG  306 (685)
Q Consensus       235 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--------~~i~~~~~~~~~~  306 (685)
                      .....+.        +|.+.|.+++|+|++++|++++.||+|++||++++..+..+..+        ..+.+++|+|+|+
T Consensus       240 ~~~~~~~--------~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  311 (380)
T 3iz6_a          240 RAVRTYH--------GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGR  311 (380)
T ss_dssp             CCCEEEC--------CCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSS
T ss_pred             cceEEEC--------CcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCC
Confidence            4444443        89999999999999999999999999999999999888776543        2488999999999


Q ss_pred             EEEEEeCCCeEEEEEcCCCeeEEEE----ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCce
Q 005656          307 LLATVADDLVIRLFDVVALRMVRKF----EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ  369 (685)
Q Consensus       307 ~l~~~~~dg~I~i~d~~~~~~~~~~----~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~  369 (685)
                      +|++|+.||.|++||+.+++.+..+    .+|.+.|++++|+|||++|++|+.||+|++|++...+.
T Consensus       312 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~~  378 (380)
T 3iz6_a          312 LLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHRK  378 (380)
T ss_dssp             EEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSSS
T ss_pred             EEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCcc
Confidence            9999999999999999999988887    68999999999999999999999999999999987643

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=9.6e-43  Score=355.17  Aligned_cols=284  Identities=18%  Similarity=0.312  Sum_probs=251.8

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCC-----CeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEe
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEK-----RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF   75 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~-----~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~   75 (685)
                      |+++|++++|+|++..+|++|+.||+|++||+.+     +..+..+. +|...|.+++|+|++++|++++.|++|++||+
T Consensus        16 H~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~   94 (319)
T 3frx_A           16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK-GHSHIVQDCTLTADGAYALSASWDKTLRLWDV   94 (319)
T ss_dssp             CSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             ccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEe-CCcccEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence            8999999999997745999999999999999864     34566777 99999999999999999999999999999999


Q ss_pred             cCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCcee
Q 005656           76 DTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI  155 (685)
Q Consensus        76 ~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (685)
                      .++    +.+..+.+|..+|.+++|+|++.+|++++.|++|++||+... ....+.                        
T Consensus        95 ~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-~~~~~~------------------------  145 (319)
T 3frx_A           95 ATG----ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-CLATLL------------------------  145 (319)
T ss_dssp             TTT----EEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC-EEEEEC------------------------
T ss_pred             CCC----CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEEEEe------------------------
Confidence            877    777888899999999999999999999999999999998532 222211                        


Q ss_pred             eeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccC------CCEEEEEecCCcEEEE
Q 005656          156 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC------GNFAVLGTAGGWIERF  229 (685)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------g~~l~~g~~dg~i~~~  229 (685)
                                                                  .|...+.++.++|.      +..+++|+.||.|++|
T Consensus       146 --------------------------------------------~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~w  181 (319)
T 3frx_A          146 --------------------------------------------GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW  181 (319)
T ss_dssp             --------------------------------------------CCSSCEEEEEECCC------CCEEEEEETTSCEEEE
T ss_pred             --------------------------------------------ccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEE
Confidence                                                        56778999999885      4589999999999999


Q ss_pred             ECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEE
Q 005656          230 NLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLA  309 (685)
Q Consensus       230 d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  309 (685)
                      |+.++.....+.        +|...|.+++|+|++++|++++.||+|++||+.+++.+..+..+..+.+++|+|++.+++
T Consensus       182 d~~~~~~~~~~~--------~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la  253 (319)
T 3frx_A          182 NLNQFQIEADFI--------GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLA  253 (319)
T ss_dssp             ETTTTEEEEEEC--------CCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEE
T ss_pred             ECCcchhheeec--------CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEE
Confidence            999887766554        899999999999999999999999999999999999999999889999999999999999


Q ss_pred             EEeCCCeEEEEEcCCCeeEEEEec--------CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005656          310 TVADDLVIRLFDVVALRMVRKFEG--------HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA  367 (685)
Q Consensus       310 ~~~~dg~I~i~d~~~~~~~~~~~~--------h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~  367 (685)
                      +++.+ .+++|++..+..+..+..        |...+.+++|+|||++|++|+.||.|++||+.++
T Consensus       254 ~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          254 AATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             EEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             EEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence            88765 599999999888777653        4567999999999999999999999999998765

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=4.6e-43  Score=360.31  Aligned_cols=283  Identities=18%  Similarity=0.235  Sum_probs=233.3

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCC------------CeeeEEeecccccCeeEEEEeCCCcEEEEecCCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEK------------RRLQSVIREAHDNAIISLHFFANEPVLMSASADN   68 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~------------~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~   68 (685)
                      |.+.|++++|+|||+ +|++++ |+++++||...            +......  .|..+|.+++|+|++ .|++|+.||
T Consensus        29 ~~~~v~~~~fs~dG~-~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~d~-~l~~~s~dg  103 (344)
T 4gqb_B           29 MERQLEAARYRSDGA-LLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGV--QTEAGVADLTWVGER-GILVASDSG  103 (344)
T ss_dssp             CCSEEEEEEECTTSC-EEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEE--EESSCEEEEEEETTT-EEEEEETTS
T ss_pred             ccCCEEEEEECCCCC-EEEEEe-CCceEEeeceeeeeccccccCCcceeeeee--ccCCCEEEEEEeCCC-eEEEEECCC
Confidence            567899999999999 888777 77788887321            1111222  467889999999986 688999999


Q ss_pred             cEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccc
Q 005656           69 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEE  148 (685)
Q Consensus        69 ~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (685)
                      +|++||+.++...........+|...|++++|+|+|++|++|+.||+|++||+.+++....+                  
T Consensus       104 ~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~------------------  165 (344)
T 4gqb_B          104 AVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSY------------------  165 (344)
T ss_dssp             EEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE------------------
T ss_pred             EEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE------------------
Confidence            99999998875433333445689999999999999999999999999999998665433222                  


Q ss_pred             cccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEE
Q 005656          149 LKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIER  228 (685)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~  228 (685)
                                                                                                      
T Consensus       166 --------------------------------------------------------------------------------  165 (344)
T 4gqb_B          166 --------------------------------------------------------------------------------  165 (344)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EECCCCccccccccccccccCCCCcCEEEEEEcCCC-CEEEEEECCCeEEEEECCCCceEEEeec---CCceeEEEEeec
Q 005656          229 FNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRWEV---GCSLVKIVYHRV  304 (685)
Q Consensus       229 ~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~i~~~~~~~~  304 (685)
                                          .+|...|.+++|++++ .++++++.||+|++||+++++....+..   ...+.+++|+|+
T Consensus       166 --------------------~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~  225 (344)
T 4gqb_B          166 --------------------RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQ  225 (344)
T ss_dssp             --------------------CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSS
T ss_pred             --------------------cCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCC
Confidence                                1789999999999987 4789999999999999999988877653   356899999995


Q ss_pred             -CCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCceeeEEeeccceEEE
Q 005656          305 -NGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILARQIDAIHVDVSITAL  382 (685)
Q Consensus       305 -~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg-~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v  382 (685)
                       ++++++|+.||.|++||+++++++..+.+|...|++++|+|++ ++|++|+.|++|+|||+.+++++....+...|+++
T Consensus       226 ~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v  305 (344)
T 4gqb_B          226 QSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDA  305 (344)
T ss_dssp             CTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEE
T ss_pred             CCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEE
Confidence             4589999999999999999999999999999999999999998 58999999999999999999877654455669999


Q ss_pred             EEcCCCCe-EEEEEeCCCeEEEEEcC
Q 005656          383 SLSPNMDV-LATAHVDQNGVYLWVNR  407 (685)
Q Consensus       383 ~~spdg~~-Lat~~~d~~~I~lW~~~  407 (685)
                      +|+|+++. |++++.|+ .|++|+..
T Consensus       306 ~~sp~~~~llas~s~D~-~v~~w~v~  330 (344)
T 4gqb_B          306 TWSPLNHSLLTTVGWDH-QVVHHVVP  330 (344)
T ss_dssp             EECSSSTTEEEEEETTS-CEEEEECC
T ss_pred             EEeCCCCeEEEEEcCCC-eEEEEECC
Confidence            99999875 66788887 99999864

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.3e-43  Score=367.40  Aligned_cols=321  Identities=17%  Similarity=0.195  Sum_probs=243.6

Q ss_pred             EEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecC------CCcEEEEEecCCCC
Q 005656            7 ALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA------DNSIKMWIFDTTDG   80 (685)
Q Consensus         7 ~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~------D~~v~iWd~~~~~~   80 (685)
                      .+.+.+++.  ++.++.+.....|++....+    . +|...|++++|+|||++|++++.      |++|++|+...+..
T Consensus        10 g~d~g~~~~--~~~~~g~~~~~~w~~p~~~p----~-~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~   82 (357)
T 4g56_B           10 GVDLGTENL--YFQSNGSSKGSAWGRPVTAP----A-CMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAP   82 (357)
T ss_dssp             -------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---
T ss_pred             CCCCCccce--EEecCCCccccccCCCCCCc----c-cccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCc
Confidence            344555554  44445567789998764332    2 79999999999999999999998      67888887766544


Q ss_pred             CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656           81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  160 (685)
Q Consensus        81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (685)
                      .........+|...|.+++|+|++. +++++.||+|++||+.+++.......                            
T Consensus        83 ~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~----------------------------  133 (357)
T 4g56_B           83 NESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKF----------------------------  133 (357)
T ss_dssp             CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCE----------------------------
T ss_pred             ceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEee----------------------------
Confidence            4444445567999999999999985 66788899999999977653322110                            


Q ss_pred             cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656          161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  240 (685)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~  240 (685)
                                                          ....|...|.+++|+|+|+++++|+.||.|++||+.++.....+
T Consensus       134 ------------------------------------~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~  177 (357)
T 4g56_B          134 ------------------------------------AKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSY  177 (357)
T ss_dssp             ------------------------------------EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             ------------------------------------ccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence                                                00167889999999999999999999999999999999887776


Q ss_pred             ccccccccCCCCcCEEEEEEcCCCC-EEEEEECCCeEEEEECCCCceEEEeec---CCceeEEEEeecC-CEEEEEeCCC
Q 005656          241 LDMSERSNYAHNGEVVGVACDSTNT-LMISAGYHGDIKVWDFKGRDLKSRWEV---GCSLVKIVYHRVN-GLLATVADDL  315 (685)
Q Consensus       241 ~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~i~~~~~~~~~-~~l~~~~~dg  315 (685)
                      .        +|...|++++|++++. ++++++.||+|++||+++++....+..   ...+.+++|+|++ .+|++|+.|+
T Consensus       178 ~--------~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~  249 (357)
T 4g56_B          178 N--------AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETG  249 (357)
T ss_dssp             C--------CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSS
T ss_pred             c--------CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeeccc
Confidence            5        8999999999999874 789999999999999999887765543   3679999999985 5899999999


Q ss_pred             eEEEEEcCCCeeEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCceeeEEeeccceEEEEEcC-CCCeEEE
Q 005656          316 VIRLFDVVALRMVRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSP-NMDVLAT  393 (685)
Q Consensus       316 ~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg-~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~sp-dg~~Lat  393 (685)
                      .|++||+.+++.++.+.+|...|++++|+|++ ++|++|+.||+|+|||+.+++++..+.+...|++++|+| ++.+|++
T Consensus       250 ~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s  329 (357)
T 4g56_B          250 NVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTT  329 (357)
T ss_dssp             CEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEE
T ss_pred             ceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEE
Confidence            99999999999999999999999999999987 589999999999999999999988887777799999999 7999999


Q ss_pred             EEeCCCeEEEEEcCC
Q 005656          394 AHVDQNGVYLWVNRC  408 (685)
Q Consensus       394 ~~~d~~~I~lW~~~~  408 (685)
                      ++.|+ .|++|+...
T Consensus       330 ~s~Dg-~v~iW~~~~  343 (357)
T 4g56_B          330 VGWDH-KVLHHHLPS  343 (357)
T ss_dssp             EETTS-CEEEEECC-
T ss_pred             EcCCC-eEEEEECCC
Confidence            99997 999998643

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3e-42  Score=354.97  Aligned_cols=292  Identities=19%  Similarity=0.317  Sum_probs=256.9

Q ss_pred             CeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCC
Q 005656           35 RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR  114 (685)
Q Consensus        35 ~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg  114 (685)
                      .+....+. +|.+.|++++|+|++++|++++.||+|++||+.++    ..+..+..|...|.+++|+|++++|++++.|+
T Consensus        45 ~~~~~~l~-gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~  119 (340)
T 1got_B           45 MRTRRTLR-GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTT----NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDN  119 (340)
T ss_dssp             CCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC----CEEEEEECSSSCEEEEEECTTSSEEEEEETTC
T ss_pred             chhheeec-CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC----CcceEeecCCccEEEEEECCCCCEEEEEeCCC
Confidence            34556777 99999999999999999999999999999998776    66777788999999999999999999999999


Q ss_pred             ceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCcee
Q 005656          115 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI  194 (685)
Q Consensus       115 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  194 (685)
                      .+++|++.+........                                                               
T Consensus       120 ~v~iw~~~~~~~~~~~~---------------------------------------------------------------  136 (340)
T 1got_B          120 ICSIYNLKTREGNVRVS---------------------------------------------------------------  136 (340)
T ss_dssp             EEEEEETTTCSBSCEEE---------------------------------------------------------------
T ss_pred             eEEEEECccCCCcceeE---------------------------------------------------------------
Confidence            99999986543211110                                                               


Q ss_pred             ecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCC
Q 005656          195 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG  274 (685)
Q Consensus       195 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg  274 (685)
                       .....|...+.++.|++++. +++++.||.|++||+.++.....+.        +|.+.|.+++|+|+++++++|+.||
T Consensus       137 -~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~--------~h~~~v~~~~~~~~~~~l~sg~~d~  206 (340)
T 1got_B          137 -RELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFT--------GHTGDVMSLSLAPDTRLFVSGACDA  206 (340)
T ss_dssp             -EEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEEC--------CCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             -EEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEc--------CCCCceEEEEECCCCCEEEEEeCCC
Confidence             00116778899999998875 8899999999999999998877664        8999999999999999999999999


Q ss_pred             eEEEEECCCCceEEEeec-CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEec--CCCCeEEEEEcCCCCEEE
Q 005656          275 DIKVWDFKGRDLKSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG--HTDRITDFCFSEDGKWLL  351 (685)
Q Consensus       275 ~i~iwd~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~--h~~~I~~l~~spdg~~l~  351 (685)
                      +|++||++++.....+.. ...|.+++|+|++++|++|+.|+.|++||+.+++.+..+..  +...|++++|+|+|++|+
T Consensus       207 ~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  286 (340)
T 1got_B          207 SAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL  286 (340)
T ss_dssp             CEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEE
T ss_pred             cEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEE
Confidence            999999999998888765 47899999999999999999999999999999988877753  335799999999999999


Q ss_pred             EEeCCCcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656          352 SSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       352 s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~  405 (685)
                      +|+.||.|++||+.+++.+..+..|.. |++++|+|+|.+|++++.|+ .|+||+
T Consensus       287 ~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~-~i~iWd  340 (340)
T 1got_B          287 AGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS-FLKIWN  340 (340)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTS-CEEEEC
T ss_pred             EECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCc-cEEecC
Confidence            999999999999999999988886654 99999999999999999997 999995

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=7.3e-43  Score=361.69  Aligned_cols=290  Identities=14%  Similarity=0.212  Sum_probs=239.8

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeC------CCcEEEEeCCCCeeeE----EeecccccCeeEEEEeCCCcEEEEecCCCcE
Q 005656            1 MRGAVTALAFSSDGQPLLASGAS------SGVISIWNLEKRRLQS----VIREAHDNAIISLHFFANEPVLMSASADNSI   70 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~------dg~I~vwd~~~~~~~~----~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v   70 (685)
                      |++.|++++|||||+ +||+|+.      ||.|++|+..++....    ... +|...|++++|+|++.+ ++++.||+|
T Consensus        41 H~~~V~~v~fSpDG~-~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~-~~~~~V~~~~~s~d~~~-l~~s~dg~v  117 (357)
T 4g56_B           41 MEVQIGAVRYRRDGA-LLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGV-QTEAGVTDVAWVSEKGI-LVASDSGAV  117 (357)
T ss_dssp             CCSEEEEEEECSSSC-EEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEE-ECSSCEEEEEEETTTEE-EEEETTSCE
T ss_pred             ccCCEEEEEECCCCC-EEEEEcCCCCccccCeEEEEECCCCCcceeEecccC-CCCCCEEEEEEcCCCCE-EEEECCCEE
Confidence            788999999999999 9999987      7889999988765432    223 68999999999999865 567789999


Q ss_pred             EEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccc
Q 005656           71 KMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELK  150 (685)
Q Consensus        71 ~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (685)
                      ++||+.++...........+|...|++++|+|++++|++++.||+|++||+.+++....+.                   
T Consensus       118 ~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~-------------------  178 (357)
T 4g56_B          118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYN-------------------  178 (357)
T ss_dssp             EEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEEC-------------------
T ss_pred             EEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEc-------------------
Confidence            9999987654333334456899999999999999999999999999999998877655543                   


Q ss_pred             cCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCC-EEEEEecCCcEEEE
Q 005656          151 LKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN-FAVLGTAGGWIERF  229 (685)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~dg~i~~~  229 (685)
                                                                       .|...|.+++|++++. .+++++.||.|++|
T Consensus       179 -------------------------------------------------~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~w  209 (357)
T 4g56_B          179 -------------------------------------------------AHSSEVNCVAACPGKDTIFLSCGEDGRILLW  209 (357)
T ss_dssp             -------------------------------------------------CCSSCEEEEEECTTCSSCEEEEETTSCEEEC
T ss_pred             -------------------------------------------------CCCCCEEEEEEccCCCceeeeeccCCceEEE
Confidence                                                             6778899999999885 78999999999999


Q ss_pred             ECCCCccccccccccccccCCCCcCEEEEEEcCCC-CEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecC-C
Q 005656          230 NLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVN-G  306 (685)
Q Consensus       230 d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~-~  306 (685)
                      |+++++....+.      ...|...+.+++|+|++ .++++|+.|+.|++||+++++....+..+ ..|.+++|+|++ +
T Consensus       210 d~~~~~~~~~~~------~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~  283 (357)
T 4g56_B          210 DTRKPKPATRID------FCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSP  283 (357)
T ss_dssp             CTTSSSCBCBCC------CTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSC
T ss_pred             ECCCCceeeeee------eccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCC
Confidence            999987765542      22677889999999975 68889999999999999999888887654 889999999987 5


Q ss_pred             EEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCc
Q 005656          307 LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE-DGKWLLSSGMDGSLRIWDVILAR  368 (685)
Q Consensus       307 ~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp-dg~~l~s~s~Dg~I~iwd~~~~~  368 (685)
                      +|++|+.|++|+|||+.++++++.+ +|.+.|++++|+| |+++|++++.||+|++|++++..
T Consensus       284 ~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~  345 (357)
T 4g56_B          284 FLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG  345 (357)
T ss_dssp             CEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred             EEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence            8999999999999999999887765 7999999999998 89999999999999999997643

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.9e-41  Score=344.68  Aligned_cols=284  Identities=20%  Similarity=0.372  Sum_probs=254.9

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG   80 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~   80 (685)
                      |+++|++++|+|+|+ +||+|+.||.|++|++.+++....+. +|...|.+++|+|++++|++++.|+.|++||+..+  
T Consensus        22 h~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~--   97 (312)
T 4ery_A           22 HTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--   97 (312)
T ss_dssp             CSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--
T ss_pred             cCCcEEEEEECCCCC-EEEEeeCCCeEEEEeCCCcccchhhc-cCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCC--
Confidence            789999999999999 99999999999999999999998887 99999999999999999999999999999999876  


Q ss_pred             CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656           81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  160 (685)
Q Consensus        81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (685)
                        +.+..+.+|...|.++.|+|++++|++++.||.|++||+.+++....+.                             
T Consensus        98 --~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----------------------------  146 (312)
T 4ery_A           98 --KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-----------------------------  146 (312)
T ss_dssp             --CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC-----------------------------
T ss_pred             --cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEec-----------------------------
Confidence              6777888999999999999999999999999999999998776554442                             


Q ss_pred             cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656          161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  240 (685)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~  240 (685)
                                                             .+...+.+++|+|+++++++|+.||.|++||+.++.....+
T Consensus       147 ---------------------------------------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~  187 (312)
T 4ery_A          147 ---------------------------------------AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL  187 (312)
T ss_dssp             ---------------------------------------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             ---------------------------------------CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEE
Confidence                                                   56778999999999999999999999999999998776654


Q ss_pred             ccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCC----ceeEEEEeecCCEEEEEeCCCe
Q 005656          241 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGC----SLVKIVYHRVNGLLATVADDLV  316 (685)
Q Consensus       241 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~~dg~  316 (685)
                      ..       .+...+..++|+|+++++++++.||.|++||+.+++....+..+.    .+......+++.++++|+.||.
T Consensus       188 ~~-------~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~  260 (312)
T 4ery_A          188 ID-------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL  260 (312)
T ss_dssp             CC-------SSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSC
T ss_pred             ec-------cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCE
Confidence            32       677889999999999999999999999999999999888776542    1222333467889999999999


Q ss_pred             EEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEEcC
Q 005656          317 IRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG--MDGSLRIWDVI  365 (685)
Q Consensus       317 I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s--~Dg~I~iwd~~  365 (685)
                      |++||+.+++.+..+.+|...|.+++|+|++++|++++  .|++|++|+..
T Consensus       261 i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          261 VYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             EEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             EEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            99999999999999999999999999999999999987  69999999864

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=4.9e-42  Score=354.07  Aligned_cols=298  Identities=17%  Similarity=0.237  Sum_probs=243.0

Q ss_pred             CCC-cEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeee--EEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecC
Q 005656            1 MRG-AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ--SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT   77 (685)
Q Consensus         1 h~~-~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~--~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~   77 (685)
                      |.+ .|++++|+|+|+ +||+|+.||.|+|||+.++...  ..+..+|.+.|.+++|+|++++|++++.|++|++|++..
T Consensus        14 h~~~~v~~l~~sp~g~-~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~   92 (345)
T 3fm0_A           14 HPDSRCWFLAWNPAGT-LLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQ   92 (345)
T ss_dssp             STTSCEEEEEECTTSS-CEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECC
T ss_pred             CCCCcEEEEEECCCCC-EEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccC
Confidence            555 899999999999 9999999999999999887643  333348999999999999999999999999999999876


Q ss_pred             CCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeee
Q 005656           78 TDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF  157 (685)
Q Consensus        78 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (685)
                      ..  ...+..+.+|..+|.+++|+|++++|++++.|++|++||+..+.....+.                          
T Consensus        93 ~~--~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~--------------------------  144 (345)
T 3fm0_A           93 DD--FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVS--------------------------  144 (345)
T ss_dssp             C---EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEE--------------------------
T ss_pred             CC--eEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEE--------------------------
Confidence            42  24567788999999999999999999999999999999997654321110                          


Q ss_pred             ecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccc
Q 005656          158 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR  237 (685)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~  237 (685)
                                                             ....|...|.+++|+|+++++++|+.||.|++||+.++...
T Consensus       145 ---------------------------------------~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~  185 (345)
T 3fm0_A          145 ---------------------------------------VLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWV  185 (345)
T ss_dssp             ---------------------------------------EECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEE
T ss_pred             ---------------------------------------EecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEE
Confidence                                                   01166788999999999999999999999999999877533


Q ss_pred             cccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCC---------------ceEEEee--cCCceeEEE
Q 005656          238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR---------------DLKSRWE--VGCSLVKIV  300 (685)
Q Consensus       238 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~---------------~~~~~~~--~~~~i~~~~  300 (685)
                      ...      ...+|...|.+++|+|++++|++++.||+|++||....               +.+..+.  +...|.+++
T Consensus       186 ~~~------~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~  259 (345)
T 3fm0_A          186 CCA------TLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIA  259 (345)
T ss_dssp             EEE------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEE
T ss_pred             EEE------EecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEE
Confidence            211      12389999999999999999999999999999996321               1222332  347899999


Q ss_pred             EeecCCEEEEEeCCCeEEEEEcCCCe---------eEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCcee
Q 005656          301 YHRVNGLLATVADDLVIRLFDVVALR---------MVRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILARQI  370 (685)
Q Consensus       301 ~~~~~~~l~~~~~dg~I~i~d~~~~~---------~~~~~~~h~~~I~~l~~spdg-~~l~s~s~Dg~I~iwd~~~~~~i  370 (685)
                      |+|++..|++++.|+.|++|+...+.         ......+|...|++++|+|++ .+|++|+.||+|++|++.+++..
T Consensus       260 ~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~  339 (345)
T 3fm0_A          260 WCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL  339 (345)
T ss_dssp             ECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC----
T ss_pred             EecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence            99999999999999999999987542         122335899999999999998 59999999999999999987765


Q ss_pred             eE
Q 005656          371 DA  372 (685)
Q Consensus       371 ~~  372 (685)
                      ..
T Consensus       340 ~~  341 (345)
T 3fm0_A          340 HH  341 (345)
T ss_dssp             --
T ss_pred             cc
Confidence            43

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.4e-41  Score=350.05  Aligned_cols=294  Identities=17%  Similarity=0.322  Sum_probs=255.8

Q ss_pred             eeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCc
Q 005656           36 RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA  115 (685)
Q Consensus        36 ~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~  115 (685)
                      +....+. +|.+.|++++|+|++++|+||+.|++|++||..+.    .....+..|...|.+++|+|+|.++++++.|+.
T Consensus        55 ~~~~~l~-gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~----~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~  129 (354)
T 2pbi_B           55 KTRRTLK-GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTT----NKEHAVTMPCTWVMACAYAPSGCAIACGGLDNK  129 (354)
T ss_dssp             CEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC----CEEEEEECSSSCCCEEEECTTSSEEEEESTTSE
T ss_pred             EEEEEec-CCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCC----CcceEEecCCCCEEEEEECCCCCEEEEeeCCCC
Confidence            4566777 99999999999999999999999999999998766    556667789999999999999999999999999


Q ss_pred             eEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceee
Q 005656          116 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL  195 (685)
Q Consensus       116 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  195 (685)
                      +++|++..........                                                              ..
T Consensus       130 i~v~~~~~~~~~~~~~--------------------------------------------------------------~~  147 (354)
T 2pbi_B          130 CSVYPLTFDKNENMAA--------------------------------------------------------------KK  147 (354)
T ss_dssp             EEEEECCCCTTCCSGG--------------------------------------------------------------GC
T ss_pred             EEEEEEeccccccccc--------------------------------------------------------------cc
Confidence            9999986442110000                                                              00


Q ss_pred             cCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcC--CCCEEEEEECC
Q 005656          196 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS--TNTLMISAGYH  273 (685)
Q Consensus       196 ~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~s~d  273 (685)
                      .....|...+.+++|+|++..+++|+.||.|++||+.++.....+.        +|...|.+++++|  ++.+|++|+.|
T Consensus       148 ~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~--------~h~~~v~~~~~~~~~~g~~l~sgs~D  219 (354)
T 2pbi_B          148 KSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH--------GHGADVLCLDLAPSETGNTFVSGGCD  219 (354)
T ss_dssp             EEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE--------CCSSCEEEEEECCCSSCCEEEEEETT
T ss_pred             eeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc--------CCCCCeEEEEEEeCCCCCEEEEEeCC
Confidence            0001567889999999999999999999999999999998877765        8999999999987  46899999999


Q ss_pred             CeEEEEECCCCceEEEeec-CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecC--CCCeEEEEEcCCCCEE
Q 005656          274 GDIKVWDFKGRDLKSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH--TDRITDFCFSEDGKWL  350 (685)
Q Consensus       274 g~i~iwd~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h--~~~I~~l~~spdg~~l  350 (685)
                      |+|++||+++++.+..+.. ...|.+++|+|++.+|++|+.|++|++||+++++.+..+..+  ...+++++|+|+|++|
T Consensus       220 g~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l  299 (354)
T 2pbi_B          220 KKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLL  299 (354)
T ss_dssp             SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEE
T ss_pred             CeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEE
Confidence            9999999999998888765 478999999999999999999999999999999888777644  3478999999999999


Q ss_pred             EEEeCCCcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656          351 LSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       351 ~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~  405 (685)
                      ++|+.|++|++||+.+++.+..+..|.. |++++|+|+|++|++++.|+ .|++|+
T Consensus       300 ~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~-~v~vW~  354 (354)
T 2pbi_B          300 FAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDH-TLRVWA  354 (354)
T ss_dssp             EEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTS-EEEEEC
T ss_pred             EEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCC-CEEecC
Confidence            9999999999999999999888876554 99999999999999999997 999995

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-43  Score=376.09  Aligned_cols=341  Identities=13%  Similarity=0.164  Sum_probs=281.8

Q ss_pred             CcEEEEEEccCCCCEEEEE----------eCCCcEEEEeCCCCe---eeEEeecccccCeeEEEEeCCCcEEEEecCCCc
Q 005656            3 GAVTALAFSSDGQPLLASG----------ASSGVISIWNLEKRR---LQSVIREAHDNAIISLHFFANEPVLMSASADNS   69 (685)
Q Consensus         3 ~~V~~l~fspdg~~~latg----------~~dg~I~vwd~~~~~---~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~   69 (685)
                      ..|++++|+|+|+.+||+|          +.||.|+|||+.++.   ....+  .|...|++++|+|++++|++++.||.
T Consensus        13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~   90 (416)
T 2pm9_A           13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL--QVDSKFNDLDWSHNNKIIAGALDNGS   90 (416)
T ss_dssp             EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC--CCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred             hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE--ecCCceEEEEECCCCCeEEEEccCCe
Confidence            3678999999997799999          889999999999875   33333  58999999999999999999999999


Q ss_pred             EEEEEecCCCCCCceeEecccCCCCCeEEEEecC-CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccc
Q 005656           70 IKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEE  148 (685)
Q Consensus        70 v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (685)
                      |++|++.........+..+.+|..+|.+++|+|+ +++|++++.||.|++||+.++.......                 
T Consensus        91 v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-----------------  153 (416)
T 2pm9_A           91 LELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNY-----------------  153 (416)
T ss_dssp             EEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTC-----------------
T ss_pred             EEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccc-----------------
Confidence            9999998743333577888899999999999998 8999999999999999997664110000                 


Q ss_pred             cccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccC-CCEEEEEecCCcEE
Q 005656          149 LKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC-GNFAVLGTAGGWIE  227 (685)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~dg~i~  227 (685)
                                                                ..........+...+.+++|+|+ +.++++++.+|.|+
T Consensus       154 ------------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~  191 (416)
T 2pm9_A          154 ------------------------------------------TPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFAS  191 (416)
T ss_dssp             ------------------------------------------CCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEE
T ss_pred             ------------------------------------------cccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEE
Confidence                                                      00000011256788999999999 78999999999999


Q ss_pred             EEECCCCccccccccccccccCCCCcCEEEEEEcCCC-CEEEEEECCC---eEEEEECCCC-ceEEEee--cCCceeEEE
Q 005656          228 RFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHG---DIKVWDFKGR-DLKSRWE--VGCSLVKIV  300 (685)
Q Consensus       228 ~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg---~i~iwd~~~~-~~~~~~~--~~~~i~~~~  300 (685)
                      +||+.++.....+....  ...+|...|.+++|+|++ .++++++.|+   .|++||++++ .....+.  +...+.+++
T Consensus       192 iwd~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~  269 (416)
T 2pm9_A          192 IWDLKAKKEVIHLSYTS--PNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLD  269 (416)
T ss_dssp             EEETTTTEEEEEECCCC--CSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEE
T ss_pred             EEECCCCCcceEEeccc--cccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEE
Confidence            99999988776654210  011348899999999997 6899999998   9999999986 5666665  568999999


Q ss_pred             Eee-cCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCceeeEEe----
Q 005656          301 YHR-VNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILARQIDAIH----  374 (685)
Q Consensus       301 ~~~-~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg-~~l~s~s~Dg~I~iwd~~~~~~i~~~~----  374 (685)
                      |+| ++.+|++++.|+.|++||+.+++.+..+.+|...|++++|+|++ ++|++++.||.|++||+.++.......    
T Consensus       270 ~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~  349 (416)
T 2pm9_A          270 WCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETET  349 (416)
T ss_dssp             ECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-----
T ss_pred             eCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccc
Confidence            999 89999999999999999999999999999999999999999999 899999999999999998765432211    


Q ss_pred             --------------------------------eccceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          375 --------------------------------VDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       375 --------------------------------~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                                                      +..++++++|+|+|++|++++.|+ .|+||+..
T Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~-~v~~w~~~  413 (416)
T 2pm9_A          350 KQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGK-GVSITNPK  413 (416)
T ss_dssp             -----------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSS-CBCCBCCC
T ss_pred             cccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCC-eEEEEEec
Confidence                                            123477999999999999999887 99999754

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.6e-41  Score=356.85  Aligned_cols=290  Identities=16%  Similarity=0.311  Sum_probs=247.6

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccc------------------cCeeEEEEeCCCcEEE
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHD------------------NAIISLHFFANEPVLM   62 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~------------------~~V~~l~~sp~~~~l~   62 (685)
                      |++.|+|++|+|||+ +||+|+ ++.++||++.+++.+..+. .|.                  ..|++++|+|++++|+
T Consensus        63 h~~~V~~v~fspdg~-~la~g~-~~~v~i~~~~~g~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~  139 (393)
T 1erj_A           63 HTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLS-DDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  139 (393)
T ss_dssp             CSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEEC-C-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             CCCEEEEEEECCCCC-EEEEEc-CCcEEEEEecCCCEEEEec-CccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence            788999999999999 899987 6899999999999888776 443                  2499999999999999


Q ss_pred             EecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhc
Q 005656           63 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKL  142 (685)
Q Consensus        63 s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  142 (685)
                      +|+.|++|++||+..+    +.+..+.+|...|.+++|+|++++|++++.|++|++||+.+++....+            
T Consensus       140 s~~~d~~i~iwd~~~~----~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~------------  203 (393)
T 1erj_A          140 TGAEDRLIRIWDIENR----KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL------------  203 (393)
T ss_dssp             EEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE------------
T ss_pred             EEcCCCeEEEEECCCC----cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE------------
Confidence            9999999999999876    777888999999999999999999999999999999999877654433            


Q ss_pred             cccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEcc-CCCEEEEEe
Q 005656          143 KMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGT  221 (685)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~  221 (685)
                                                                               .+...+.+++++| +++++++|+
T Consensus       204 ---------------------------------------------------------~~~~~v~~~~~~~~~~~~l~~~s  226 (393)
T 1erj_A          204 ---------------------------------------------------------SIEDGVTTVAVSPGDGKYIAAGS  226 (393)
T ss_dssp             ---------------------------------------------------------ECSSCEEEEEECSTTCCEEEEEE
T ss_pred             ---------------------------------------------------------EcCCCcEEEEEECCCCCEEEEEc
Confidence                                                                     2245689999999 899999999


Q ss_pred             cCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc------------eEEE
Q 005656          222 AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD------------LKSR  289 (685)
Q Consensus       222 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~------------~~~~  289 (685)
                      .||.|++||+.++.....+.... ....+|...|.+++|+|++++|++++.||+|++||+.+..            ....
T Consensus       227 ~d~~v~iwd~~~~~~~~~~~~~~-~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~  305 (393)
T 1erj_A          227 LDRAVRVWDSETGFLVERLDSEN-ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT  305 (393)
T ss_dssp             TTSCEEEEETTTCCEEEEEC-------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEE
T ss_pred             CCCcEEEEECCCCcEEEeecccc-cCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEE
Confidence            99999999999987665542111 1123799999999999999999999999999999997532            2333


Q ss_pred             ee-cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcC------CCCEEEEEeCCCcEEEE
Q 005656          290 WE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE------DGKWLLSSGMDGSLRIW  362 (685)
Q Consensus       290 ~~-~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp------dg~~l~s~s~Dg~I~iw  362 (685)
                      +. +...|.+++++|++.+|++|+.|+.|++||+.+++++..+.+|.+.|.+++|++      ++++|++|+.||+|++|
T Consensus       306 ~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW  385 (393)
T 1erj_A          306 YIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW  385 (393)
T ss_dssp             EECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEE
T ss_pred             EecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEEC
Confidence            33 447899999999999999999999999999999999999999999999999986      68899999999999999


Q ss_pred             EcCCC
Q 005656          363 DVILA  367 (685)
Q Consensus       363 d~~~~  367 (685)
                      ++...
T Consensus       386 ~~~~~  390 (393)
T 1erj_A          386 KYKKI  390 (393)
T ss_dssp             EEEEC
T ss_pred             ccccc
Confidence            98643

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.5e-41  Score=350.30  Aligned_cols=286  Identities=18%  Similarity=0.313  Sum_probs=241.3

Q ss_pred             CCCcEEEEEE-----cc-CCCCEEEEEeCCCcEEEEeCCCC-------eeeEEeecccccCeeEEEEeCCCcEEEEecCC
Q 005656            1 MRGAVTALAF-----SS-DGQPLLASGASSGVISIWNLEKR-------RLQSVIREAHDNAIISLHFFANEPVLMSASAD   67 (685)
Q Consensus         1 h~~~V~~l~f-----sp-dg~~~latg~~dg~I~vwd~~~~-------~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D   67 (685)
                      |+++|++++|     ++ +++ +||+|+.||+|++||+.+.       .....+. +|...|.+++|+|++.++++++.|
T Consensus        20 H~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~-~h~~~V~~~~~~~~~~~l~s~s~D   97 (343)
T 2xzm_R           20 HSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALT-GHNHFVSDLALSQENCFAISSSWD   97 (343)
T ss_dssp             CSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSBSEEEEEEEC-CCSSCEEEEEECSSTTEEEEEETT
T ss_pred             chhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCcccccccccchhc-cCCCceEEEEECCCCCEEEEEcCC
Confidence            8899999999     77 887 9999999999999998753       4456666 999999999999999999999999


Q ss_pred             CcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccccc
Q 005656           68 NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEE  147 (685)
Q Consensus        68 ~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (685)
                      ++|++||+.++    +.+..+.+|...|.+++|+|++++|++++.|++|++||+..... ....                
T Consensus        98 ~~v~lwd~~~~----~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~-~~~~----------------  156 (343)
T 2xzm_R           98 KTLRLWDLRTG----TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECK-FSSA----------------  156 (343)
T ss_dssp             SEEEEEETTSS----CEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEE-EECC----------------
T ss_pred             CcEEEEECCCC----cEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCce-eeee----------------
Confidence            99999999876    67778889999999999999999999999999999999863211 1110                


Q ss_pred             ccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCC----------CEE
Q 005656          148 ELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG----------NFA  217 (685)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g----------~~l  217 (685)
                                                                       ....+...+.+++|+|++          .++
T Consensus       157 -------------------------------------------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l  187 (343)
T 2xzm_R          157 -------------------------------------------------EKENHSDWVSCVRYSPIMKSANKVQPFAPYF  187 (343)
T ss_dssp             -------------------------------------------------TTTSCSSCEEEEEECCCCCSCSCCCSSCCEE
T ss_pred             -------------------------------------------------cccCCCceeeeeeeccccccccccCCCCCEE
Confidence                                                             011566779999999887          799


Q ss_pred             EEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECC-CCceEEEeecCCce
Q 005656          218 VLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK-GRDLKSRWEVGCSL  296 (685)
Q Consensus       218 ~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~i  296 (685)
                      ++|+.||.|++||. .+.....+.        +|...|.+++|+|++++|++|+.||.|++||+. .......+.....+
T Consensus       188 ~s~~~d~~i~iwd~-~~~~~~~~~--------~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v  258 (343)
T 2xzm_R          188 ASVGWDGRLKVWNT-NFQIRYTFK--------AHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTI  258 (343)
T ss_dssp             EEEETTSEEEEEET-TTEEEEEEE--------CCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCE
T ss_pred             EEEcCCCEEEEEcC-CCceeEEEc--------CccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcE
Confidence            99999999999994 333333332        899999999999999999999999999999994 45555666667789


Q ss_pred             eEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEE--EEe-----------cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005656          297 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVR--KFE-----------GHTDRITDFCFSEDGKWLLSSGMDGSLRIWD  363 (685)
Q Consensus       297 ~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~--~~~-----------~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd  363 (685)
                      .+++|+|++.+++++ .|+.|++||+.+++...  .+.           +|...|++++|+|+|++|++|+.||+|++|+
T Consensus       259 ~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~  337 (343)
T 2xzm_R          259 NQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFS  337 (343)
T ss_dssp             EEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEE
T ss_pred             EEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEE
Confidence            999999999888765 57789999998875433  443           6888999999999999999999999999999


Q ss_pred             cCCCc
Q 005656          364 VILAR  368 (685)
Q Consensus       364 ~~~~~  368 (685)
                      +.++.
T Consensus       338 ~~~g~  342 (343)
T 2xzm_R          338 FETSA  342 (343)
T ss_dssp             EEEEE
T ss_pred             EEccC
Confidence            87653

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=4.7e-42  Score=359.24  Aligned_cols=313  Identities=18%  Similarity=0.283  Sum_probs=264.3

Q ss_pred             CcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCC
Q 005656           25 GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG  104 (685)
Q Consensus        25 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~  104 (685)
                      ..+..|+.....+...+. +|.+.|++++|+|++++|+||+.|++|++||+.++    .....+.+|...|.+++|+|+|
T Consensus        46 ~~~~~~~~~~~~~~~~l~-gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~----~~~~~~~~h~~~v~~~~~s~~g  120 (380)
T 3iz6_a           46 RTAVSFNPTDLVCCRTLQ-GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTS----QKTHAIKLHCPWVMECAFAPNG  120 (380)
T ss_dssp             GGCCCCCCCCCEEEEEEC-CCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTT----EEEEEEECCCTTCCCCEECTTS
T ss_pred             ccccccccceeEEeeccc-ccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----ccceEEecCCCCEEEEEECCCC
Confidence            445678888888888998 99999999999999999999999999999998876    6777888999999999999999


Q ss_pred             CEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEE
Q 005656          105 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR  184 (685)
Q Consensus       105 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~  184 (685)
                      ++|++|+.|+.+++|++.+.......                                                      
T Consensus       121 ~~las~~~d~~v~iw~~~~~~~~~~~------------------------------------------------------  146 (380)
T 3iz6_a          121 QSVACGGLDSACSIFNLSSQADRDGN------------------------------------------------------  146 (380)
T ss_dssp             SEEEECCSSSCCEEEECCCCSSCCCS------------------------------------------------------
T ss_pred             CEEEEeeCCCcEEEEECCCCccccCC------------------------------------------------------
Confidence            99999999999999998654211000                                                      


Q ss_pred             cCccccCceeecCCCCCCCCeEEEEEccC-CCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcC-
Q 005656          185 LQNFVLGEHILRPCPENPTAVKACTISAC-GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS-  262 (685)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-  262 (685)
                             ........+|...+.++.|+|+ +..+++|+.||.|++||+.++.....+...   ...+|...|.+++|++ 
T Consensus       147 -------~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~---~~~~h~~~v~~~~~~~~  216 (380)
T 3iz6_a          147 -------MPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSE---FPSGHTADVLSLSINSL  216 (380)
T ss_dssp             -------STTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCC---SSSSCCSCEEEEEECSS
T ss_pred             -------ccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecc---cCCCCccCeEEEEeecC
Confidence                   0001112367888999999996 467999999999999999999876654211   1237999999999987 


Q ss_pred             CCCEEEEEECCCeEEEEECC-CCceEEEee-cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCC----
Q 005656          263 TNTLMISAGYHGDIKVWDFK-GRDLKSRWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTD----  336 (685)
Q Consensus       263 ~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~----  336 (685)
                      ++.++++|+.||+|++||++ .+..+..+. +...|.+++|+|++++|++|+.|++|++||+.+++.+..+..+..    
T Consensus       217 ~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~  296 (380)
T 3iz6_a          217 NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDN  296 (380)
T ss_dssp             SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCC
T ss_pred             CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccccc
Confidence            78899999999999999998 445666665 458899999999999999999999999999999999988875433    


Q ss_pred             ---CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEE----e-eccceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          337 ---RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI----H-VDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       337 ---~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~----~-~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                         .|++++|+|+|++|++|+.||.|++||+.+++.+..+    . +...|++++|+|+|++|++|+.|+ .|++|+..
T Consensus       297 ~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~-~i~iW~~~  374 (380)
T 3iz6_a          297 ELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDK-NLKIWAFS  374 (380)
T ss_dssp             SSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTS-CEEEEECC
T ss_pred             ccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCC-CEEEEecC
Confidence               4899999999999999999999999999999888776    2 334599999999999999999997 99999854

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.5e-40  Score=338.86  Aligned_cols=290  Identities=19%  Similarity=0.306  Sum_probs=251.0

Q ss_pred             eeEEeecccccCeeEEEEeCCC-cEEEEecCCCcEEEEEecCCCCC-CceeEecccCCCCCeEEEEecCCCEEEEEeCCC
Q 005656           37 LQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGD-PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR  114 (685)
Q Consensus        37 ~~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg  114 (685)
                      +..++. +|.+.|++++|+|++ ++|+||+.|++|++|++...... ...+..+.+|...|.+++|+|++++|++++.|+
T Consensus         9 l~~~l~-gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~   87 (319)
T 3frx_A            9 LRGTLE-GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK   87 (319)
T ss_dssp             EEEEEC-CCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEc-cccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCC
Confidence            455676 999999999999965 79999999999999998754321 245677889999999999999999999999999


Q ss_pred             ceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCcee
Q 005656          115 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI  194 (685)
Q Consensus       115 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  194 (685)
                      +|++||+.+++....+.                                                               
T Consensus        88 ~v~~wd~~~~~~~~~~~---------------------------------------------------------------  104 (319)
T 3frx_A           88 TLRLWDVATGETYQRFV---------------------------------------------------------------  104 (319)
T ss_dssp             EEEEEETTTTEEEEEEE---------------------------------------------------------------
T ss_pred             EEEEEECCCCCeeEEEc---------------------------------------------------------------
Confidence            99999998887655543                                                               


Q ss_pred             ecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCC------CCEEE
Q 005656          195 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST------NTLMI  268 (685)
Q Consensus       195 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~------~~~l~  268 (685)
                           .|...|.+++|+|++.++++|+.||.|++||+.... ...+        .+|...|.++.+.|.      +..++
T Consensus       105 -----~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~-~~~~--------~~h~~~v~~~~~~~~~~~~~~~~~l~  170 (319)
T 3frx_A          105 -----GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC-LATL--------LGHNDWVSQVRVVPNEKADDDSVTII  170 (319)
T ss_dssp             -----CCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCE-EEEE--------CCCSSCEEEEEECCC------CCEEE
T ss_pred             -----cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-EEEE--------eccCCcEEEEEEccCCCCCCCccEEE
Confidence                 678899999999999999999999999999997543 3333        289999999999985      44899


Q ss_pred             EEECCCeEEEEECCCCceEEEeec-CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCC
Q 005656          269 SAGYHGDIKVWDFKGRDLKSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDG  347 (685)
Q Consensus       269 s~s~dg~i~iwd~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg  347 (685)
                      +++.|+.|++||+.+.+....+.. ...|.+++|+|++++|++|+.|+.|++||+.+++.+..+..+ ..|.+++|+|++
T Consensus       171 s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~  249 (319)
T 3frx_A          171 SAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNR  249 (319)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEECSSS
T ss_pred             EEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcCCC
Confidence            999999999999999888777654 488999999999999999999999999999999999999854 689999999999


Q ss_pred             CEEEEEeCCCcEEEEEcCCCceeeEEee---------ccceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          348 KWLLSSGMDGSLRIWDVILARQIDAIHV---------DVSITALSLSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       348 ~~l~s~s~Dg~I~iwd~~~~~~i~~~~~---------~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                      .+|++++.+ .+++|++..+..+..+..         ...+.+++|+|||++|++++.|+ .|++|+..
T Consensus       250 ~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg-~i~vWd~~  316 (319)
T 3frx_A          250 YWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN-VIRVWQVM  316 (319)
T ss_dssp             SEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTS-CEEEEEEE
T ss_pred             CEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCc-eEEEEEEe
Confidence            999988865 499999998887776642         23489999999999999999997 99999854

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=5e-40  Score=334.24  Aligned_cols=290  Identities=20%  Similarity=0.357  Sum_probs=257.0

Q ss_pred             CeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCC
Q 005656           35 RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR  114 (685)
Q Consensus        35 ~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg  114 (685)
                      ......+. +|.+.|++++|+|++++|++++.|+.|++|++..+    +....+.+|...|.+++|+|++++|++++.||
T Consensus        13 ~~~~~~~~-gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~   87 (312)
T 4ery_A           13 YALKFTLA-GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSSDSNLLVSASDDK   87 (312)
T ss_dssp             CEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ceeEEEEc-ccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCc----ccchhhccCCCceEEEEEcCCCCEEEEECCCC
Confidence            34556666 99999999999999999999999999999998766    66777889999999999999999999999999


Q ss_pred             ceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCcee
Q 005656          115 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI  194 (685)
Q Consensus       115 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  194 (685)
                      .|++||+.+++....+.                                                               
T Consensus        88 ~i~vwd~~~~~~~~~~~---------------------------------------------------------------  104 (312)
T 4ery_A           88 TLKIWDVSSGKCLKTLK---------------------------------------------------------------  104 (312)
T ss_dssp             EEEEEETTTCCEEEEEE---------------------------------------------------------------
T ss_pred             EEEEEECCCCcEEEEEc---------------------------------------------------------------
Confidence            99999998776554442                                                               


Q ss_pred             ecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCC
Q 005656          195 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG  274 (685)
Q Consensus       195 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg  274 (685)
                           .+...+.+++|+|+++++++|+.||.|++||+.++.....+.        .|...|.+++|+|+++++++++.||
T Consensus       105 -----~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~d~  171 (312)
T 4ery_A          105 -----GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP--------AHSDPVSAVHFNRDGSLIVSSSYDG  171 (312)
T ss_dssp             -----CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC--------CCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             -----CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEec--------CCCCcEEEEEEcCCCCEEEEEeCCC
Confidence                 567889999999999999999999999999999988776654        7999999999999999999999999


Q ss_pred             eEEEEECCCCceEEEeec--CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEE--EEE-cCCCCE
Q 005656          275 DIKVWDFKGRDLKSRWEV--GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITD--FCF-SEDGKW  349 (685)
Q Consensus       275 ~i~iwd~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~--l~~-spdg~~  349 (685)
                      .|++||+.+++....+..  ..++..++|+|++++|++++.|+.|++||+.+++.+..+.+|...+..  ..+ .+++++
T Consensus       172 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (312)
T 4ery_A          172 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW  251 (312)
T ss_dssp             CEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCE
T ss_pred             cEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcE
Confidence            999999999888776643  367899999999999999999999999999999999999998775433  233 468899


Q ss_pred             EEEEeCCCcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEE--eCCCeEEEEEc
Q 005656          350 LLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAH--VDQNGVYLWVN  406 (685)
Q Consensus       350 l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~--~d~~~I~lW~~  406 (685)
                      |++|+.||.|++||+.+++.+..+..|.. |.+++|+|++.+|++++  .|+ .|++|..
T Consensus       252 l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~-~i~~W~~  310 (312)
T 4ery_A          252 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK-TIKLWKS  310 (312)
T ss_dssp             EEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTC-CEEEEEC
T ss_pred             EEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCc-cEEEecC
Confidence            99999999999999999999999886655 99999999999999998  365 9999974

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=4e-41  Score=406.66  Aligned_cols=396  Identities=16%  Similarity=0.236  Sum_probs=311.4

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeC--CCcEEEEecCCCcEEEEEecCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA--NEPVLMSASADNSIKMWIFDTT   78 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~s~D~~v~iWd~~~~   78 (685)
                      |.+.|++++|+|+|+ +||+|+.||.|+|||+.+++.+..+. +|...|.+++|+|  ++.++++++.|+.|++||+.++
T Consensus       656 h~~~v~~~~~s~~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~  733 (1249)
T 3sfz_A          656 HEDEVLCCAFSSDDS-YIATCSADKKVKIWDSATGKLVHTYD-EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK  733 (1249)
T ss_dssp             CSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS
T ss_pred             CCCCEEEEEEecCCC-EEEEEeCCCeEEEEECCCCceEEEEc-CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc
Confidence            789999999999998 99999999999999999999999998 9999999999999  4559999999999999999877


Q ss_pred             CCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhh----ccccccccccC--
Q 005656           79 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARK----LKMKEEELKLK--  152 (685)
Q Consensus        79 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~--  152 (685)
                          .....+.+|..+|++++|+|+++++++++.||+|++||+.++.....+...........    .........+.  
T Consensus       734 ----~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d  809 (1249)
T 3sfz_A          734 ----ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSAD  809 (1249)
T ss_dssp             ----SEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTT
T ss_pred             ----chhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCC
Confidence                67778889999999999999999999999999999999998877665542211100000    00000000000  


Q ss_pred             ----------ceeeeec-----------------ccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCe
Q 005656          153 ----------PVIAFDC-----------------AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAV  205 (685)
Q Consensus       153 ----------~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v  205 (685)
                                .+..+..                 ....-......+..+..++.+.+|+.......    .....|...|
T Consensus       810 g~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~----~~~~~h~~~v  885 (1249)
T 3sfz_A          810 GDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKV----ADCRGHLSWV  885 (1249)
T ss_dssp             SSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEE----EEECCCSSCE
T ss_pred             CCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcee----eecCCCccce
Confidence                      0000000                 00000112345667777889999998864332    2223677778


Q ss_pred             EEEEEccCCCEEEEEecCCcEEEEECCCCcccc-----------------------------------------------
Q 005656          206 KACTISACGNFAVLGTAGGWIERFNLQSGISRG-----------------------------------------------  238 (685)
Q Consensus       206 ~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~-----------------------------------------------  238 (685)
                      .+++|+|+|+++++++.||.|++|++.++....                                               
T Consensus       886 ~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  965 (1249)
T 3sfz_A          886 HGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVS  965 (1249)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEE
T ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEE
Confidence            888888888888888888888888754210000                                               


Q ss_pred             ---------------------cc---ccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCC
Q 005656          239 ---------------------SY---LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGC  294 (685)
Q Consensus       239 ---------------------~~---~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  294 (685)
                                           .+   .........+|...|++++|+|+++++++++.||.|++||+.+++......+..
T Consensus       966 ~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 1045 (1249)
T 3sfz_A          966 CCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQE 1045 (1249)
T ss_dssp             EEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSS
T ss_pred             EEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCC
Confidence                                 00   000011233799999999999999999999999999999999998887777789


Q ss_pred             ceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEe
Q 005656          295 SLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH  374 (685)
Q Consensus       295 ~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~  374 (685)
                      .+.++.++|++ .+++++.|+.|++||+.+++.+..+.+|.+.|++++|+|++++|++++.||+|++||+.+++++..+.
T Consensus      1046 ~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~ 1124 (1249)
T 3sfz_A         1046 TVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK 1124 (1249)
T ss_dssp             CEEEEEECSSS-EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCC
T ss_pred             cEEEEEEcCCC-cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeec
Confidence            99999999955 57788999999999999999999999999999999999999999999999999999999999988887


Q ss_pred             eccc-eEEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656          375 VDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNRC  408 (685)
Q Consensus       375 ~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~~~~  408 (685)
                      .+.. |++++|+|+|++|++++.|+ .|++|+...
T Consensus      1125 ~h~~~v~~~~~s~dg~~lat~~~dg-~i~vwd~~~ 1158 (1249)
T 3sfz_A         1125 GHNGCVRCSAFSLDGILLATGDDNG-EIRIWNVSD 1158 (1249)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTS-CCCEEESSS
T ss_pred             cCCCcEEEEEECCCCCEEEEEeCCC-EEEEEECCC
Confidence            6555 99999999999999999997 899998653

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1e-40  Score=372.53  Aligned_cols=375  Identities=9%  Similarity=0.084  Sum_probs=294.4

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeeccccc---CeeEEEEeCC-CcEEEEecCCCcEEEEEec
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDN---AIISLHFFAN-EPVLMSASADNSIKMWIFD   76 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~---~V~~l~~sp~-~~~l~s~s~D~~v~iWd~~   76 (685)
                      |.+.|++++|+|+++.++++|+.||.|++||+.+++....+. +|..   .|.+++|+|+ +++|++++.|+.|++||+.
T Consensus       159 ~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~  237 (615)
T 1pgu_A          159 HSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR-THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK  237 (615)
T ss_dssp             CSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC-SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT
T ss_pred             CCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeec-ccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECC
Confidence            678999999999998789999999999999999999999998 8999   9999999999 9999999999999999988


Q ss_pred             CCCCCCceeEec-c---cCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccC
Q 005656           77 TTDGDPRLLRFR-S---GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK  152 (685)
Q Consensus        77 ~~~~~~~~~~~~-~---~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (685)
                      .+    +.+..+ .   +|..+|.+++|+ ++++|++++.||.|++||+.+++....+......             ...
T Consensus       238 ~~----~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~-------------~~~  299 (615)
T 1pgu_A          238 SG----EFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQ-------------LGN  299 (615)
T ss_dssp             TC----CEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTC-------------GGG
T ss_pred             CC----CEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCc-------------ccC
Confidence            76    566666 5   899999999999 9999999999999999999988877666432100             000


Q ss_pred             ceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCcee-------------------------------ecCCCCC
Q 005656          153 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI-------------------------------LRPCPEN  201 (685)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~-------------------------------~~~~~~~  201 (685)
                      .+......      ....+.+...++.+++|+..........                               +.  ..+
T Consensus       300 ~~~~~~~~------~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~--~~~  371 (615)
T 1pgu_A          300 QQVGVVAT------GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMH--QDH  371 (615)
T ss_dssp             CEEEEEEE------ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEE--CCC
T ss_pred             ceeEEEeC------CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhc--Ccc
Confidence            01111000      1223444445556666665542211100                               01  356


Q ss_pred             CCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccc-----------------------ccc--cccccccCCCCcCEE
Q 005656          202 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG-----------------------SYL--DMSERSNYAHNGEVV  256 (685)
Q Consensus       202 ~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~-----------------------~~~--~~~~~~~~~h~~~v~  256 (685)
                      ...|.++++ ++++.+++++.+|.|++||+.++....                       .+.  .........|...+.
T Consensus       372 ~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  450 (615)
T 1pgu_A          372 SNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGS  450 (615)
T ss_dssp             CSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEE
T ss_pred             cCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCce
Confidence            667777777 557788888888888888776433100                       000  000001114778899


Q ss_pred             EEEEcCCCCEEEEEEC-CCeEEEEECCCCceE-EEe-ecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEec
Q 005656          257 GVACDSTNTLMISAGY-HGDIKVWDFKGRDLK-SRW-EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG  333 (685)
Q Consensus       257 ~l~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~-~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~  333 (685)
                      +++|+  ++++++++. ||.|++||+.+++.. ..+ .+...+.+++|+|++++|++++.||.|++||+.+++.+..+.+
T Consensus       451 ~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~  528 (615)
T 1pgu_A          451 AVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWA  528 (615)
T ss_dssp             EEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSC
T ss_pred             EEEEc--CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeec
Confidence            99999  889999999 999999999987764 333 3458899999999999999999999999999999999999988


Q ss_pred             -CCCCeEEEEEcC----------CCCEEEEEeCCCcEEEEEcCCC-ceeeEEeecc-ceEEEEEcCCCCeEEEEEeCCCe
Q 005656          334 -HTDRITDFCFSE----------DGKWLLSSGMDGSLRIWDVILA-RQIDAIHVDV-SITALSLSPNMDVLATAHVDQNG  400 (685)
Q Consensus       334 -h~~~I~~l~~sp----------dg~~l~s~s~Dg~I~iwd~~~~-~~i~~~~~~~-~v~~v~~spdg~~Lat~~~d~~~  400 (685)
                       |...|++++|+|          ++++|++++.||.|++||+.++ +++..+..|. .|++++|+|+++ |++++.|+ .
T Consensus       529 ~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~-~  606 (615)
T 1pgu_A          529 FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADA-C  606 (615)
T ss_dssp             CCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTS-C
T ss_pred             CCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCc-e
Confidence             999999999999          9999999999999999999998 7777776554 499999999999 99999997 9


Q ss_pred             EEEEEcC
Q 005656          401 VYLWVNR  407 (685)
Q Consensus       401 I~lW~~~  407 (685)
                      |++|+..
T Consensus       607 v~iw~~~  613 (615)
T 1pgu_A          607 IKRWNVV  613 (615)
T ss_dssp             EEEEEEC
T ss_pred             EEEEeee
Confidence            9999864

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-40  Score=381.15  Aligned_cols=386  Identities=13%  Similarity=0.118  Sum_probs=272.3

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG   80 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~   80 (685)
                      |.+.|++++|+|+|+ +||+|+.||.|+||+..+.+....+  .|..+|.+++|+| +++|++++.|++|++||+.++  
T Consensus        16 h~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~~~--~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~--   89 (902)
T 2oaj_A           16 MSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVIKL--EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ--   89 (902)
T ss_dssp             CSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEEEC--SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC--
T ss_pred             CCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEEEc--CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC--
Confidence            788999999999999 9999999999999999888776654  5889999999999 889999999999999999876  


Q ss_pred             CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656           81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  160 (685)
Q Consensus        81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (685)
                        +++..+. |...|++++|+|++++|++|+.||+|++||+.++... .+............     .....++..+...
T Consensus        90 --~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~-~~~i~~~~~~~~~~-----~~h~~~V~sl~~s  160 (902)
T 2oaj_A           90 --KVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS-SFKLDNLQKSSFFP-----AARLSPIVSIQWN  160 (902)
T ss_dssp             --SEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE-EEEECCHHHHHTCS-----SSCCCCCCEEEEE
T ss_pred             --cEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc-cceecccccccccc-----ccCCCCeEEEEEc
Confidence              5555554 6789999999999999999999999999999877653 11110000000000     0111222222211


Q ss_pred             cccccCCcceEEEEcCCceEEEEEcCccccCceeecC--------------CCCCCCCeEEEEEccCCCEEEEEecCCcE
Q 005656          161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRP--------------CPENPTAVKACTISACGNFAVLGTAGGWI  226 (685)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~--------------~~~~~~~v~~~~~s~~g~~l~~g~~dg~i  226 (685)
                          ++....+..+..++.+ +|++............              ...+...|.+++|+|+|+++++|+.||.|
T Consensus       161 ----p~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i  235 (902)
T 2oaj_A          161 ----PRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSL  235 (902)
T ss_dssp             ----TTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCE
T ss_pred             ----cCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeE
Confidence                1122456677788889 9999875433222110              11235779999999999999999999999


Q ss_pred             EEEECCCCccccc--ccccc-c-------cccCCCCcCEEEEEEc----CCC-CEEE-----------------------
Q 005656          227 ERFNLQSGISRGS--YLDMS-E-------RSNYAHNGEVVGVACD----STN-TLMI-----------------------  268 (685)
Q Consensus       227 ~~~d~~~~~~~~~--~~~~~-~-------~~~~~h~~~v~~l~~~----~~~-~~l~-----------------------  268 (685)
                      ++||+.+++....  +.... .       .....|...|.+++|+    |++ ..++                       
T Consensus       236 ~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~  315 (902)
T 2oaj_A          236 VFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPR  315 (902)
T ss_dssp             EEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCC
T ss_pred             EEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCC
Confidence            9999998876432  10000 0       0000133456666663    222 2333                       


Q ss_pred             -----------------------------------------------------EEECCCeEEEEECCCCceEEE------
Q 005656          269 -----------------------------------------------------SAGYHGDIKVWDFKGRDLKSR------  289 (685)
Q Consensus       269 -----------------------------------------------------s~s~dg~i~iwd~~~~~~~~~------  289 (685)
                                                                           +++.||.|++||+.++.....      
T Consensus       316 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~  395 (902)
T 2oaj_A          316 YSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQ  395 (902)
T ss_dssp             GGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCG
T ss_pred             ccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCC
Confidence                                                                 334445566666544432211      


Q ss_pred             -ee-cCCceeE----------------------------------EEEeecCCEEEEEeCCCeEEEEEcCCCeeE----E
Q 005656          290 -WE-VGCSLVK----------------------------------IVYHRVNGLLATVADDLVIRLFDVVALRMV----R  329 (685)
Q Consensus       290 -~~-~~~~i~~----------------------------------~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~----~  329 (685)
                       +. ++..+++                                  ++|+|++++|++|+.|++|++||+.++...    .
T Consensus       396 ~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~  475 (902)
T 2oaj_A          396 NLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASF  475 (902)
T ss_dssp             GGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCE
T ss_pred             cccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceE
Confidence             00 1122333                                  445788999999999999999999887421    1


Q ss_pred             E--Ee-----cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc----------------------------------
Q 005656          330 K--FE-----GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR----------------------------------  368 (685)
Q Consensus       330 ~--~~-----~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~----------------------------------  368 (685)
                      .  +.     +|...|++++|+|||++||+|+.||+|++||+.+++                                  
T Consensus       476 ~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  555 (902)
T 2oaj_A          476 EVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRD  555 (902)
T ss_dssp             EEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGG
T ss_pred             EeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccc
Confidence            1  11     799999999999999999999999999999998763                                  


Q ss_pred             -----------eeeEEee-ccceEEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656          369 -----------QIDAIHV-DVSITALSLSPNMDVLATAHVDQNGVYLWVNRC  408 (685)
Q Consensus       369 -----------~i~~~~~-~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~  408 (685)
                                 ++..+.. ...|++++||||| +||+|+.|+ .|+||+.+.
T Consensus       556 ~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~-tv~lwd~~~  605 (902)
T 2oaj_A          556 RAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAG-SLMLIDRRG  605 (902)
T ss_dssp             GCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTS-EEEEEETTT
T ss_pred             cCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCC-cEEEEECCC
Confidence                       2455554 4459999999999 999999987 999999654

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-40  Score=340.43  Aligned_cols=290  Identities=18%  Similarity=0.275  Sum_probs=229.6

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCC--eeeEEeecc-cccCeeEEEEeCCCcEEEEecCCCcEEEEEecC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR--RLQSVIREA-HDNAIISLHFFANEPVLMSASADNSIKMWIFDT   77 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~--~~~~~~~~~-h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~   77 (685)
                      |+++|++++|+|+   +||+|+.||.|++||+..+  .....+..+ |.+.|.+++|+|++++|++++.|++|++|++..
T Consensus        13 h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~   89 (330)
T 2hes_X           13 YKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEE   89 (330)
T ss_dssp             CSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC--
T ss_pred             CCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEccc
Confidence            8899999999986   8999999999999999875  455555224 999999999999999999999999999999864


Q ss_pred             CC---CCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCce
Q 005656           78 TD---GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV  154 (685)
Q Consensus        78 ~~---~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (685)
                      ..   .....+..+.+|...|.+++|+|++++|++|+.|++|++||+.........                        
T Consensus        90 ~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~------------------------  145 (330)
T 2hes_X           90 SADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYEC------------------------  145 (330)
T ss_dssp             -----CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEE------------------------
T ss_pred             CcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEE------------------------
Confidence            32   123566778899999999999999999999999999999998533110000                        


Q ss_pred             eeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCC
Q 005656          155 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG  234 (685)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~  234 (685)
                                                              ......|...|.+++|+|+++++++|+.||.|++||..++
T Consensus       146 ----------------------------------------~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~  185 (330)
T 2hes_X          146 ----------------------------------------ISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDD  185 (330)
T ss_dssp             ----------------------------------------EEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETT
T ss_pred             ----------------------------------------EEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence                                                    0011167788999999999999999999999999998766


Q ss_pred             --ccccccccccccccCCCCcCEEEEEEcCC--CCEEEEEECCCeEEEEECCCC--------ceEEEee--cCCceeEEE
Q 005656          235 --ISRGSYLDMSERSNYAHNGEVVGVACDST--NTLMISAGYHGDIKVWDFKGR--------DLKSRWE--VGCSLVKIV  300 (685)
Q Consensus       235 --~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~s~dg~i~iwd~~~~--------~~~~~~~--~~~~i~~~~  300 (685)
                        .....+        .+|.+.|.+++|+|+  +.++++++.|++|++||+.++        .....+.  +...|.+++
T Consensus       186 ~~~~~~~~--------~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~  257 (330)
T 2hes_X          186 DWECVAVL--------NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVA  257 (330)
T ss_dssp             EEEEEEEE--------CCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEE
T ss_pred             CeeEEEEc--------cCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEE
Confidence              333333        289999999999998  678999999999999998754        2333333  457899999


Q ss_pred             EeecCCEEEEEeCCCeEEEEEcCCCe--eEEE-EecCCC-CeEEEEEcC--CCCEEEEEeCCCcEEEEEcCC
Q 005656          301 YHRVNGLLATVADDLVIRLFDVVALR--MVRK-FEGHTD-RITDFCFSE--DGKWLLSSGMDGSLRIWDVIL  366 (685)
Q Consensus       301 ~~~~~~~l~~~~~dg~I~i~d~~~~~--~~~~-~~~h~~-~I~~l~~sp--dg~~l~s~s~Dg~I~iwd~~~  366 (685)
                      |+++ .+|++++.||.|++||..+++  .+.. +.+|.. .|++++|+|  ++++|++|+.||+|++||+.+
T Consensus       258 ~s~~-~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          258 WGFN-GLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             ECTT-SCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             EcCC-CEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            9965 489999999999999998874  3333 357887 899999999  789999999999999999865

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=4.7e-40  Score=397.32  Aligned_cols=370  Identities=18%  Similarity=0.272  Sum_probs=305.2

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG   80 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~   80 (685)
                      |.+.|++++|+|+|+ ++|+|+.||.|++||+.+++.+..+. +|.+.|.+++|+|++++|++++.|++|++||+.++  
T Consensus       614 h~~~v~~~~~s~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~--  689 (1249)
T 3sfz_A          614 HTDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGEKLLDIK-AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG--  689 (1249)
T ss_dssp             CSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--
T ss_pred             ccccEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCEEEEec-cCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC--
Confidence            789999999999999 99999999999999999999999998 99999999999999999999999999999999877  


Q ss_pred             CCceeEecccCCCCCeEEEEec--CCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeee
Q 005656           81 DPRLLRFRSGHSAPPLCIRFYA--NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD  158 (685)
Q Consensus        81 ~~~~~~~~~~h~~~v~~i~~~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (685)
                        +.+..+.+|...|.+++|+|  ++.++++++.||.|++||+.++.....+...                 ..++..+.
T Consensus       690 --~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h-----------------~~~v~~~~  750 (1249)
T 3sfz_A          690 --KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGH-----------------TNSVNHCR  750 (1249)
T ss_dssp             --CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCC-----------------SSCEEEEE
T ss_pred             --ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCC-----------------CCCEEEEE
Confidence              77888889999999999999  4568999999999999999988876665321                 11121111


Q ss_pred             cccccccCCcceEEEEcCCceEEEEEcCccccCce---------------------------------------------
Q 005656          159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH---------------------------------------------  193 (685)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~---------------------------------------------  193 (685)
                      ..    ++ ...+.....++.+++|++........                                             
T Consensus       751 ~s----p~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d  825 (1249)
T 3sfz_A          751 FS----PD-DELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFD  825 (1249)
T ss_dssp             EC----SS-TTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEE
T ss_pred             Ee----cC-CCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEE
Confidence            11    11 12344444556666666543321100                                             


Q ss_pred             ------eecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEE
Q 005656          194 ------ILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLM  267 (685)
Q Consensus       194 ------~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l  267 (685)
                            .......+...+.+++|+|+++++++|+.+|.|++||+.++.....+.        +|.+.|.+++|+|+++++
T Consensus       826 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~--------~h~~~v~~v~~spdg~~l  897 (1249)
T 3sfz_A          826 IHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCR--------GHLSWVHGVMFSPDGSSF  897 (1249)
T ss_dssp             TTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEEC--------CCSSCEEEEEECTTSSEE
T ss_pred             ecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecC--------CCccceEEEEECCCCCEE
Confidence                  001112567789999999999999999999999999999988776664        899999999999999999


Q ss_pred             EEEECCCeEEEEECCCCce--------------------------------------EEEeecCCceeEEEEeecCCEEE
Q 005656          268 ISAGYHGDIKVWDFKGRDL--------------------------------------KSRWEVGCSLVKIVYHRVNGLLA  309 (685)
Q Consensus       268 ~s~s~dg~i~iwd~~~~~~--------------------------------------~~~~~~~~~i~~~~~~~~~~~l~  309 (685)
                      ++++.||.|++||+.+...                                      .........+.+++++|++++++
T Consensus       898 ~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~  977 (1249)
T 3sfz_A          898 LTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVA  977 (1249)
T ss_dssp             EEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEE
T ss_pred             EEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEE
Confidence            9999999999999753110                                      00111235789999999999999


Q ss_pred             EEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCC
Q 005656          310 TVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMD  389 (685)
Q Consensus       310 ~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~  389 (685)
                      +|+.+|.|++||+.+++.+..+.+|...|++++|+|+|++|++++.||.|++||+.+++......+...|.+++|+|++.
T Consensus       978 ~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 1057 (1249)
T 3sfz_A          978 FGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSR 1057 (1249)
T ss_dssp             EEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSE
T ss_pred             EEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCc
Confidence            99999999999999999999999999999999999999999999999999999999998887666677799999999765


Q ss_pred             eEEEEEeCCCeEEEEEcCC
Q 005656          390 VLATAHVDQNGVYLWVNRC  408 (685)
Q Consensus       390 ~Lat~~~d~~~I~lW~~~~  408 (685)
                       +++++.|+ .|++|+...
T Consensus      1058 -l~~~~~dg-~v~vwd~~~ 1074 (1249)
T 3sfz_A         1058 -LLSWSFDG-TVKVWNVIT 1074 (1249)
T ss_dssp             -EEEEESSS-EEEEEETTT
T ss_pred             -EEEEECCC-cEEEEECCC
Confidence             67777786 999999653

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=5.4e-40  Score=338.81  Aligned_cols=300  Identities=16%  Similarity=0.206  Sum_probs=242.5

Q ss_pred             CeeeEEeeccccc-CeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCC
Q 005656           35 RRLQSVIREAHDN-AIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD  113 (685)
Q Consensus        35 ~~~~~~~~~~h~~-~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d  113 (685)
                      .+++.++. +|.+ .|.+++|+|+|++|++|+.|++|++|++..+... .......+|...|.+++|+|++++|++|+.|
T Consensus         5 ~~~~~~~~-~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~-~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D   82 (345)
T 3fm0_A            5 LVLLGRVP-AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWI-CKSVLSEGHQRTVRKVAWSPCGNYLASASFD   82 (345)
T ss_dssp             EEEEEEEC-CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEE-EEEEECSSCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEeeeec-CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcce-eeeeeccccCCcEEEEEECCCCCEEEEEECC
Confidence            34567777 8887 9999999999999999999999999998765210 1122346899999999999999999999999


Q ss_pred             CceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCce
Q 005656          114 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH  193 (685)
Q Consensus       114 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  193 (685)
                      +++++|++..+......                                                               
T Consensus        83 ~~v~iw~~~~~~~~~~~---------------------------------------------------------------   99 (345)
T 3fm0_A           83 ATTCIWKKNQDDFECVT---------------------------------------------------------------   99 (345)
T ss_dssp             SCEEEEEECCC-EEEEE---------------------------------------------------------------
T ss_pred             CcEEEEEccCCCeEEEE---------------------------------------------------------------
Confidence            99999998655321100                                                               


Q ss_pred             eecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC
Q 005656          194 ILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH  273 (685)
Q Consensus       194 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d  273 (685)
                         ...+|...|.+++|+|+|+++++|+.||.|++||+.++.......     ...+|...|.+++|+|++.+|++++.|
T Consensus       100 ---~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-----~~~~h~~~v~~~~~~p~~~~l~s~s~d  171 (345)
T 3fm0_A          100 ---TLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVS-----VLNSHTQDVKHVVWHPSQELLASASYD  171 (345)
T ss_dssp             ---EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEE-----EECCCCSCEEEEEECSSSSCEEEEETT
T ss_pred             ---EccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEE-----EecCcCCCeEEEEECCCCCEEEEEeCC
Confidence               111678899999999999999999999999999998765322111     223899999999999999999999999


Q ss_pred             CeEEEEECCCCceE--EEee-cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCC---------------CeeEEEEec-C
Q 005656          274 GDIKVWDFKGRDLK--SRWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA---------------LRMVRKFEG-H  334 (685)
Q Consensus       274 g~i~iwd~~~~~~~--~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~---------------~~~~~~~~~-h  334 (685)
                      ++|++||..++...  ..+. +...|.+++|+|++++|++|+.|++|++||...               .+++..+.+ |
T Consensus       172 ~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  251 (345)
T 3fm0_A          172 DTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFH  251 (345)
T ss_dssp             SCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSC
T ss_pred             CcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCC
Confidence            99999999887533  3444 448899999999999999999999999999632               244556665 8


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCce----eeE-----Ee-eccceEEEEEcCCCC-eEEEEEeCCCeEEE
Q 005656          335 TDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ----IDA-----IH-VDVSITALSLSPNMD-VLATAHVDQNGVYL  403 (685)
Q Consensus       335 ~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~----i~~-----~~-~~~~v~~v~~spdg~-~Lat~~~d~~~I~l  403 (685)
                      ...|.+++|+|++..|++++.|+.|++|+...+..    ...     .. +...|++++|+|++. +||+++.|+ .|++
T Consensus       252 ~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg-~v~~  330 (345)
T 3fm0_A          252 SRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDG-EVAF  330 (345)
T ss_dssp             SSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTS-CEEE
T ss_pred             CCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCC-cEEE
Confidence            89999999999999999999999999999876431    111     11 234599999999984 899999887 9999


Q ss_pred             EEcCC
Q 005656          404 WVNRC  408 (685)
Q Consensus       404 W~~~~  408 (685)
                      |+...
T Consensus       331 W~~~~  335 (345)
T 3fm0_A          331 WKYQR  335 (345)
T ss_dssp             EEECC
T ss_pred             EEecC
Confidence            98653

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=9.8e-40  Score=336.07  Aligned_cols=287  Identities=19%  Similarity=0.321  Sum_probs=249.4

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe-----eeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEe
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-----LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF   75 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~-----~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~   75 (685)
                      |+++|++|+|+|++..+||||+.||+|+|||+.+.+     +...+. +|...|.+++|+|++++|++++.|+.|++|+.
T Consensus        37 H~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~-~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~  115 (340)
T 4aow_A           37 HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR-GHSHFVSDVVISSDGQFALSGSWDGTLRLWDL  115 (340)
T ss_dssp             CSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             ccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEe-CCCCCEEEEEECCCCCEEEEEcccccceEEee
Confidence            899999999999854499999999999999987643     455666 89999999999999999999999999999998


Q ss_pred             cCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCcee
Q 005656           76 DTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI  155 (685)
Q Consensus        76 ~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (685)
                      ...    ........+...+..+.+++++.+|++++.|+.+++||+.........                         
T Consensus       116 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~-------------------------  166 (340)
T 4aow_A          116 TTG----TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQ-------------------------  166 (340)
T ss_dssp             TTT----EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC-------------------------
T ss_pred             ccc----ceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEE-------------------------
Confidence            776    556666778889999999999999999999999999997554322111                         


Q ss_pred             eeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCC--CEEEEEecCCcEEEEECCC
Q 005656          156 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG--NFAVLGTAGGWIERFNLQS  233 (685)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~g~~dg~i~~~d~~~  233 (685)
                                                                ...+...+.++++++++  .++++++.|+.|++||+.+
T Consensus       167 ------------------------------------------~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~  204 (340)
T 4aow_A          167 ------------------------------------------DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN  204 (340)
T ss_dssp             ------------------------------------------SSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT
T ss_pred             ------------------------------------------eccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCC
Confidence                                                      11567788999998765  5788999999999999999


Q ss_pred             CccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeC
Q 005656          234 GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVAD  313 (685)
Q Consensus       234 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  313 (685)
                      +.....+.        +|.+.|++++|+|++++|++|+.||.|++||+.+.+.+..+..+..+.++.|+|++.++ +++.
T Consensus       205 ~~~~~~~~--------~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~  275 (340)
T 4aow_A          205 CKLKTNHI--------GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWL-CAAT  275 (340)
T ss_dssp             TEEEEEEC--------CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEE-EEEE
T ss_pred             CceeeEec--------CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCcee-eccC
Confidence            98877664        89999999999999999999999999999999999999999999999999999987655 5556


Q ss_pred             CCeEEEEEcCCCeeEEEEe---------cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 005656          314 DLVIRLFDVVALRMVRKFE---------GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR  368 (685)
Q Consensus       314 dg~I~i~d~~~~~~~~~~~---------~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~  368 (685)
                      |+.|++||++++..+..+.         +|...|++++|+|||++|++|+.||.|+|||+.+|.
T Consensus       276 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          276 GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             TTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             CCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            8999999999988776654         688899999999999999999999999999999885

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-39  Score=339.58  Aligned_cols=302  Identities=17%  Similarity=0.263  Sum_probs=263.5

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG   80 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~   80 (685)
                      |+++|++++|+|+|+ +|++|+.||.|++||+.+++.+..+. +|.+.|.+++|+|++++|++++.||.|++||+..+  
T Consensus        31 h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--  106 (369)
T 3zwl_B           31 HERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGERLGTLD-GHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG--  106 (369)
T ss_dssp             CSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC--
T ss_pred             eeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchhhhhhh-hcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--
Confidence            889999999999999 99999999999999999999999998 99999999999999999999999999999999876  


Q ss_pred             CCceeEecccCCCCCeEEEEecCCCEEEEEeCC-----CceEEEEeecCceeeEechhhHHHHHhhccccccccccCcee
Q 005656           81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD-----RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI  155 (685)
Q Consensus        81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (685)
                        +.+..+. |..+|.+++|+|+++++++++.+     |.|++||+........+....                ..++ 
T Consensus       107 --~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~----------------~~~~-  166 (369)
T 3zwl_B          107 --QCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVS----------------EEPI-  166 (369)
T ss_dssp             --CEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEEC----------------SSCS-
T ss_pred             --cEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccc----------------ccee-
Confidence              5555554 88999999999999999999999     999999998765433221100                0000 


Q ss_pred             eeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCC-C
Q 005656          156 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS-G  234 (685)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~-~  234 (685)
                                                           ... ........+.+++|+|+++++++|+.+|.|++||+.+ +
T Consensus       167 -------------------------------------~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  208 (369)
T 3zwl_B          167 -------------------------------------HKI-ITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY  208 (369)
T ss_dssp             -------------------------------------EEE-ECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTT
T ss_pred             -------------------------------------eec-cCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc
Confidence                                                 000 0002233899999999999999999999999999998 5


Q ss_pred             ccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCC
Q 005656          235 ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD  314 (685)
Q Consensus       235 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  314 (685)
                      .....+.        .|...|.+++|+|++.+|++++.||.|++||+.+++....+.....+..++|+|++.++++++.+
T Consensus       209 ~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  280 (369)
T 3zwl_B          209 EYVDSID--------LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQ  280 (369)
T ss_dssp             EEEEEEE--------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECC
T ss_pred             EeEEEEe--------cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecC
Confidence            5555443        79999999999999999999999999999999999999999989999999999999999999998


Q ss_pred             C--------------eEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeE
Q 005656          315 L--------------VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDA  372 (685)
Q Consensus       315 g--------------~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~  372 (685)
                      +              .+++||..+++.+..+.+|...|++++|+|++++|++++.||.|++|++..+.....
T Consensus       281 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~  352 (369)
T 3zwl_B          281 EAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDFK  352 (369)
T ss_dssp             C-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHTCC
T ss_pred             CCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccchhH
Confidence            8              899999999999999999999999999999999999999999999999987655433

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.7e-40  Score=378.07  Aligned_cols=393  Identities=11%  Similarity=0.078  Sum_probs=283.4

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeee-----------EEeecccccCeeEEEEeCC-CcEEEEecCCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ-----------SVIREAHDNAIISLHFFAN-EPVLMSASADN   68 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~-----------~~~~~~h~~~V~~l~~sp~-~~~l~s~s~D~   68 (685)
                      |.+.|++++|+|+|+ +|++|+.||.|++||+.++++.           ..+. +|.++|++++|+|+ +..|++|+.|+
T Consensus        97 ~~~~V~~v~~sp~g~-~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~-~h~~~V~sl~~sp~~~~~l~~g~~dg  174 (902)
T 2oaj_A           97 VPGKITSIDTDASLD-WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPA-ARLSPIVSIQWNPRDIGTVLISYEYV  174 (902)
T ss_dssp             CSSCEEEEECCTTCS-EEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSS-SCCCCCCEEEEETTEEEEEEEECSSC
T ss_pred             CCCCEEEEEECCCCC-EEEEEcCCCcEEEEECCCCccccceeccccccccccc-cCCCCeEEEEEccCCCCEEEEEeCCC
Confidence            567899999999999 9999999999999999998764           1223 79999999999996 47999999999


Q ss_pred             cEEEEEecCCCCCCceeEecccC------------------CCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEe
Q 005656           69 SIKMWIFDTTDGDPRLLRFRSGH------------------SAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSREL  130 (685)
Q Consensus        69 ~v~iWd~~~~~~~~~~~~~~~~h------------------~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~  130 (685)
                      +| +||+..+    +.+..+.+|                  ...|++++|+|+|++|++++.||+|++||+.+++.....
T Consensus       175 ~v-lWd~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r  249 (902)
T 2oaj_A          175 TL-TYSLVEN----EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMAR  249 (902)
T ss_dssp             EE-EEETTTT----EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEE
T ss_pred             cE-EEECCCC----ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEE
Confidence            99 9999876    555544444                  678999999999999999999999999999888765431


Q ss_pred             ch--hhHHHHHhhccccccc-cccCceeeeecccccccCCcceEEEEcCC-----ceEEEEEcCccc-------------
Q 005656          131 SQ--RHVAKRARKLKMKEEE-LKLKPVIAFDCAEIRERDWCNVVTCHMDT-----AQAYVWRLQNFV-------------  189 (685)
Q Consensus       131 ~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~w~~~~~~-------------  189 (685)
                      ..  ........  ...... ....++..+.......++...+++++..+     ..+.+|++....             
T Consensus       250 ~l~~~~~~~~~~--~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~  327 (902)
T 2oaj_A          250 TVFETEINVPQP--DYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNY  327 (902)
T ss_dssp             CSSCSCTTSCCT--TCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHH
T ss_pred             eecccccCCCCC--cCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhh
Confidence            10  00000000  000000 01123433333222233333455544322     367788743110             


Q ss_pred             ----cCceeecCCCCCCCCeEEEEEcc----------CCCEEEEEecCCcEEEEECCCCcccccc-------c-------
Q 005656          190 ----LGEHILRPCPENPTAVKACTISA----------CGNFAVLGTAGGWIERFNLQSGISRGSY-------L-------  241 (685)
Q Consensus       190 ----~~~~~~~~~~~~~~~v~~~~~s~----------~g~~l~~g~~dg~i~~~d~~~~~~~~~~-------~-------  241 (685)
                          .....+..  .+...+..+++.+          ++..+++++.+|.|++||+.++......       .       
T Consensus       328 ~~~~~~~~~~~~--~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~  405 (902)
T 2oaj_A          328 YANPKQMKIFPL--PTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLAT  405 (902)
T ss_dssp             HHSCSEEEEECC--SSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEE
T ss_pred             hcCccceEEEec--CCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCee
Confidence                00111111  2456788888765          3447899999999999999877432210       0       


Q ss_pred             -------------------cccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceE----EEe--------
Q 005656          242 -------------------DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLK----SRW--------  290 (685)
Q Consensus       242 -------------------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~----~~~--------  290 (685)
                                         ........+|...+..++|+|+++++++|+.||+|++||+.++...    ...        
T Consensus       406 ~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~  485 (902)
T 2oaj_A          406 TSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNK  485 (902)
T ss_dssp             EEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTC
T ss_pred             EEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCC
Confidence                               0000112355556666777899999999999999999999887532    111        


Q ss_pred             ecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCC---------------------------------------------
Q 005656          291 EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL---------------------------------------------  325 (685)
Q Consensus       291 ~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~---------------------------------------------  325 (685)
                      .+...|.+++|+|++++||+|+.||+|++||+.++                                             
T Consensus       486 ~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  565 (902)
T 2oaj_A          486 AKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGF  565 (902)
T ss_dssp             SSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEE
T ss_pred             CCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCcc
Confidence            34478999999999999999999999999999876                                             


Q ss_pred             eeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeE-----Ee-ec-cceEEEEEc-----CCC---Ce
Q 005656          326 RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDA-----IH-VD-VSITALSLS-----PNM---DV  390 (685)
Q Consensus       326 ~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~-----~~-~~-~~v~~v~~s-----pdg---~~  390 (685)
                      +++..+.+|.+.|++++||||| +||+|+.|++|++||+.++..+..     +. .| ..|++++|+     |||   ++
T Consensus       566 ~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~  644 (902)
T 2oaj_A          566 MPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSIL  644 (902)
T ss_dssp             EEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEE
T ss_pred             ceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceE
Confidence            3477888999999999999999 999999999999999988876642     21 23 339999999     886   89


Q ss_pred             EEEEEeCCCeEEEEEc
Q 005656          391 LATAHVDQNGVYLWVN  406 (685)
Q Consensus       391 Lat~~~d~~~I~lW~~  406 (685)
                      |++++.|+ .|++|+.
T Consensus       645 l~sgs~D~-tv~~wd~  659 (902)
T 2oaj_A          645 MVCGTDMG-EVITYKI  659 (902)
T ss_dssp             EEEEETTS-EEEEEEE
T ss_pred             EEEEecCC-cEEEEEE
Confidence            99999997 9999996

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.6e-39  Score=362.92  Aligned_cols=377  Identities=15%  Similarity=0.186  Sum_probs=290.8

Q ss_pred             CCCc-EEEEEEcc--CCCCEEEEEeCCCcEEEEeCCCC--------eeeEEeecccccCeeE------------------
Q 005656            1 MRGA-VTALAFSS--DGQPLLASGASSGVISIWNLEKR--------RLQSVIREAHDNAIIS------------------   51 (685)
Q Consensus         1 h~~~-V~~l~fsp--dg~~~latg~~dg~I~vwd~~~~--------~~~~~~~~~h~~~V~~------------------   51 (685)
                      |.+. |++++|+|  +|+ +||+|+.||.|++||+.++        +....+. +|..+|.+                  
T Consensus        62 h~~~~v~~~~~sp~~~~~-~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~  139 (615)
T 1pgu_A           62 HGSSVVTTVKFSPIKGSQ-YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQ-VLAGPISDISWDFEGRRLCVVGEGRD  139 (615)
T ss_dssp             TTTSCEEEEEECSSTTCC-EEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEE-CCSSCEEEEEECTTSSEEEEEECCSS
T ss_pred             CCCceEEEEEECcCCCCC-EEEEecCCCEEEEEeCCCCcccccccccccchhh-cccccEEEEEEeCCCCEEEEeccCCC
Confidence            6788 99999999  999 9999999999999999744        4444444 45545544                  


Q ss_pred             --------------------------EEEeCCCc-EEEEecCCCcEEEEEecCCCCCCceeEecccCCC---CCeEEEEe
Q 005656           52 --------------------------LHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSA---PPLCIRFY  101 (685)
Q Consensus        52 --------------------------l~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~---~v~~i~~~  101 (685)
                                                ++|+|+++ .+++++.|+.|++||+...    +.+..+.+|..   .|.+++|+
T Consensus       140 ~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~----~~~~~~~~~~~~~~~v~~~~~~  215 (615)
T 1pgu_A          140 NFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF----KFSASDRTHHKQGSFVRDVEFS  215 (615)
T ss_dssp             CSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB----EEEEEECSSSCTTCCEEEEEEC
T ss_pred             CccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc----ceeeeecccCCCCceEEEEEEC
Confidence                                      45555554 6777778899999987765    67778889999   99999999


Q ss_pred             cC-CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceE
Q 005656          102 AN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQA  180 (685)
Q Consensus       102 ~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (685)
                      |+ +++|++++.||.|++||+.+++....+....             .....++..+...     + ...+.....++.+
T Consensus       216 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-------------~~~~~~v~~~~~~-----~-~~~l~~~~~d~~i  276 (615)
T 1pgu_A          216 PDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQ-------------EPVQGGIFALSWL-----D-SQKFATVGADATI  276 (615)
T ss_dssp             STTCCEEEEEETTCCEEEEETTTCCEEEECCBTT-------------BCCCSCEEEEEES-----S-SSEEEEEETTSEE
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCCEeEEecccc-------------cccCCceEEEEEc-----C-CCEEEEEcCCCcE
Confidence            99 9999999999999999998887766652100             0011223332222     2 2345556667899


Q ss_pred             EEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccccc----------------
Q 005656          181 YVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMS----------------  244 (685)
Q Consensus       181 ~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~----------------  244 (685)
                      ++|++...................+.++.++ +++++++|+.+|.|++||+.++.....+....                
T Consensus       277 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~  355 (615)
T 1pgu_A          277 RVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSY  355 (615)
T ss_dssp             EEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEET
T ss_pred             EEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECC
Confidence            9999987654443332222334677888886 99999999999999999999876654442100                


Q ss_pred             ----------ccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECC--------------------------------
Q 005656          245 ----------ERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK--------------------------------  282 (685)
Q Consensus       245 ----------~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~--------------------------------  282 (685)
                                ... ..|...|.+++| +++..+++++.||.|++||+.                                
T Consensus       356 dg~i~~w~~~~~~-~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  433 (615)
T 1pgu_A          356 DGRIMEWSSSSMH-QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQ  433 (615)
T ss_dssp             TSCEEETTTTEEE-CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEE
T ss_pred             CCeEEEEEchhhc-CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEe
Confidence                      000 356667777777 456778888888888888765                                


Q ss_pred             --CCceEEEeecCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCeeE-EEEecCCCCeEEEEEcCCCCEEEEEeCCCc
Q 005656          283 --GRDLKSRWEVGCSLVKIVYHRVNGLLATVAD-DLVIRLFDVVALRMV-RKFEGHTDRITDFCFSEDGKWLLSSGMDGS  358 (685)
Q Consensus       283 --~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~I~i~d~~~~~~~-~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~  358 (685)
                        +++.+..+.+...+.+++|+  ++++++++. |+.|++||+.+++.. ..+.+|...|++++|+|+|++|++++.||.
T Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~  511 (615)
T 1pgu_A          434 SFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGK  511 (615)
T ss_dssp             TTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             ccCCceeeecccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCe
Confidence              44455556667889999999  889999999 999999999988776 677789999999999999999999999999


Q ss_pred             EEEEEcCCCceeeEEe--eccceEEEEEcC----------CCCeEEEEEeCCCeEEEEEcCC
Q 005656          359 LRIWDVILARQIDAIH--VDVSITALSLSP----------NMDVLATAHVDQNGVYLWVNRC  408 (685)
Q Consensus       359 I~iwd~~~~~~i~~~~--~~~~v~~v~~sp----------dg~~Lat~~~d~~~I~lW~~~~  408 (685)
                      |++||+.+++.+..+.  +...|++++|+|          ++++|++++.|+ .|++|+...
T Consensus       512 i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg-~i~iw~~~~  572 (615)
T 1pgu_A          512 ILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDT-NIFIYSVKR  572 (615)
T ss_dssp             EEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTS-CEEEEESSC
T ss_pred             EEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCC-cEEEEECCC
Confidence            9999999999998877  445599999999          999999999997 999999754

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.5e-39  Score=333.72  Aligned_cols=293  Identities=16%  Similarity=0.245  Sum_probs=241.0

Q ss_pred             eeeEEeecccccCeeEEEE-----eC-CCcEEEEecCCCcEEEEEecCCCCC---CceeEecccCCCCCeEEEEecCCCE
Q 005656           36 RLQSVIREAHDNAIISLHF-----FA-NEPVLMSASADNSIKMWIFDTTDGD---PRLLRFRSGHSAPPLCIRFYANGRH  106 (685)
Q Consensus        36 ~~~~~~~~~h~~~V~~l~~-----sp-~~~~l~s~s~D~~v~iWd~~~~~~~---~~~~~~~~~h~~~v~~i~~~~~~~~  106 (685)
                      ++...+. +|.+.|++++|     ++ ++++|+||+.|++|++|++......   ......+.+|...|.+++|+|++.+
T Consensus        12 ~~~~~l~-gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~   90 (343)
T 2xzm_R           12 VKRGILE-GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF   90 (343)
T ss_dssp             EEEEEEE-CCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred             eeeeeec-cchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCE
Confidence            3456676 99999999999     76 8999999999999999999764321   2455677899999999999999999


Q ss_pred             EEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcC
Q 005656          107 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ  186 (685)
Q Consensus       107 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  186 (685)
                      +++++.|++|++||+.+++....+.                                                       
T Consensus        91 l~s~s~D~~v~lwd~~~~~~~~~~~-------------------------------------------------------  115 (343)
T 2xzm_R           91 AISSSWDKTLRLWDLRTGTTYKRFV-------------------------------------------------------  115 (343)
T ss_dssp             EEEEETTSEEEEEETTSSCEEEEEE-------------------------------------------------------
T ss_pred             EEEEcCCCcEEEEECCCCcEEEEEc-------------------------------------------------------
Confidence            9999999999999998876655443                                                       


Q ss_pred             ccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCC--
Q 005656          187 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN--  264 (685)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--  264 (685)
                                   .|...|.+++|+|+++++++|+.||.|++||+.........      ....|...|.+++|+|++  
T Consensus       116 -------------~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~  176 (343)
T 2xzm_R          116 -------------GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSA------EKENHSDWVSCVRYSPIMKS  176 (343)
T ss_dssp             -------------CCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECC------TTTSCSSCEEEEEECCCCCS
T ss_pred             -------------CCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeee------cccCCCceeeeeeecccccc
Confidence                         67889999999999999999999999999999743322111      123788999999999987  


Q ss_pred             --------CEEEEEECCCeEEEEECCCCceEEEee-cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCC-CeeEEEEecC
Q 005656          265 --------TLMISAGYHGDIKVWDFKGRDLKSRWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA-LRMVRKFEGH  334 (685)
Q Consensus       265 --------~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~-~~~~~~~~~h  334 (685)
                              .++++++.||.|++||.. ......+. +...|.+++|+|++++|++|+.|+.|++||+.+ ......+. +
T Consensus       177 ~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~  254 (343)
T 2xzm_R          177 ANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-A  254 (343)
T ss_dssp             CSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-C
T ss_pred             ccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-C
Confidence                    789999999999999954 44444444 458899999999999999999999999999954 44444443 5


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceee--EEe-----------ec-cceEEEEEcCCCCeEEEEEeCCCe
Q 005656          335 TDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQID--AIH-----------VD-VSITALSLSPNMDVLATAHVDQNG  400 (685)
Q Consensus       335 ~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~--~~~-----------~~-~~v~~v~~spdg~~Lat~~~d~~~  400 (685)
                      ...|++++|+|++++++++ .|+.|++|++.+++...  .+.           .+ ..|++++|+|+|++|++|+.|+ .
T Consensus       255 ~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg-~  332 (343)
T 2xzm_R          255 GSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDG-V  332 (343)
T ss_dssp             SSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTS-E
T ss_pred             CCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCc-e
Confidence            5679999999999987755 57889999998877654  332           22 3499999999999999999997 9


Q ss_pred             EEEEEcC
Q 005656          401 VYLWVNR  407 (685)
Q Consensus       401 I~lW~~~  407 (685)
                      |++|+..
T Consensus       333 v~~w~~~  339 (343)
T 2xzm_R          333 IRTFSFE  339 (343)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            9999853

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3.9e-39  Score=338.69  Aligned_cols=299  Identities=15%  Similarity=0.254  Sum_probs=251.4

Q ss_pred             CcEEEEeCCCCeee----EEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCC--------
Q 005656           25 GVISIWNLEKRRLQ----SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHS--------   92 (685)
Q Consensus        25 g~I~vwd~~~~~~~----~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~--------   92 (685)
                      ....+|+....+..    .... +|.+.|.+++|+|+|++|++++ ++++++|++..+    ..+..+.+|.        
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g----~~~~~l~~~~~~~~~~~~  113 (393)
T 1erj_A           40 DYYILYNPALPREIDVELHKSL-DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDG----SLVARLSDDSAANKDPEN  113 (393)
T ss_dssp             SCEEEECTTSCCCEEEEEEEEE-ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTC----CEEEEECC----------
T ss_pred             ceEEEECCCCCcccCceeEEec-CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCC----CEEEEecCcccccccccc
Confidence            33557765543321    1222 6999999999999999999986 789999998776    4444444432        


Q ss_pred             ----------CCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccc
Q 005656           93 ----------APPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI  162 (685)
Q Consensus        93 ----------~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (685)
                                ..|.+++|+|+|++|++|+.||.|++||+.+++....+.                               
T Consensus       114 ~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~-------------------------------  162 (393)
T 1erj_A          114 LNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ-------------------------------  162 (393)
T ss_dssp             -------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-------------------------------
T ss_pred             ccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc-------------------------------
Confidence                      248999999999999999999999999998776544442                               


Q ss_pred             cccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccc
Q 005656          163 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD  242 (685)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~  242 (685)
                                                           .|...|.+++|+|+++++++|+.||.|++||+.++.....+  
T Consensus       163 -------------------------------------~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~--  203 (393)
T 1erj_A          163 -------------------------------------GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL--  203 (393)
T ss_dssp             -------------------------------------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE--
T ss_pred             -------------------------------------cCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE--
Confidence                                                 67888999999999999999999999999999998876655  


Q ss_pred             ccccccCCCCcCEEEEEEcC-CCCEEEEEECCCeEEEEECCCCceEEEe--------ecCCceeEEEEeecCCEEEEEeC
Q 005656          243 MSERSNYAHNGEVVGVACDS-TNTLMISAGYHGDIKVWDFKGRDLKSRW--------EVGCSLVKIVYHRVNGLLATVAD  313 (685)
Q Consensus       243 ~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~--------~~~~~i~~~~~~~~~~~l~~~~~  313 (685)
                             .+...+.+++|+| +++++++++.||.|++||+.++..+..+        .+...|.+++|+|++++|++|+.
T Consensus       204 -------~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~  276 (393)
T 1erj_A          204 -------SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL  276 (393)
T ss_dssp             -------ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET
T ss_pred             -------EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC
Confidence                   5667899999999 8899999999999999999998877665        24478999999999999999999


Q ss_pred             CCeEEEEEcCCC------------eeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccc-eE
Q 005656          314 DLVIRLFDVVAL------------RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-IT  380 (685)
Q Consensus       314 dg~I~i~d~~~~------------~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~  380 (685)
                      |+.|++||+.+.            .+...+.+|...|.+++|+|++++|++|+.||.|++||+.+++.+..+..|.. |.
T Consensus       277 d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~  356 (393)
T 1erj_A          277 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVI  356 (393)
T ss_dssp             TSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred             CCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEE
Confidence            999999999753            45667889999999999999999999999999999999999999998886655 99


Q ss_pred             EEEEcC------CCCeEEEEEeCCCeEEEEEcC
Q 005656          381 ALSLSP------NMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       381 ~v~~sp------dg~~Lat~~~d~~~I~lW~~~  407 (685)
                      +++|++      ++.+|++++.|+ .|++|+.+
T Consensus       357 ~v~~~~~~~~~p~~~~l~sgs~Dg-~i~iW~~~  388 (393)
T 1erj_A          357 SVAVANGSSLGPEYNVFATGSGDC-KARIWKYK  388 (393)
T ss_dssp             EEEECSSCTTCTTCEEEEEEETTS-EEEEEEEE
T ss_pred             EEEecCCcCcCCCCCEEEEECCCC-cEEECccc
Confidence            999886      688999999997 99999854

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=3.1e-40  Score=350.70  Aligned_cols=326  Identities=13%  Similarity=0.156  Sum_probs=268.2

Q ss_pred             EEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCce
Q 005656            5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRL   84 (685)
Q Consensus         5 V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~   84 (685)
                      +++++|+|+|+ +|++|+.||.|++||+.+++....+. .| ..+....|+|++++|++++.|+.|++||+..+    ..
T Consensus        59 ~~~~~~s~~g~-~l~~~~~d~~v~i~d~~~~~~~~~~~-~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~  131 (420)
T 3vl1_A           59 GKGNTFEKVGS-HLYKARLDGHDFLFNTIIRDGSKMLK-RA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN----LQ  131 (420)
T ss_dssp             CTTCEEEEEET-TEEEEEETTEEEEEECCSEETTTTSC-SC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSC----EE
T ss_pred             ccceeeeecCC-eEEEEEcCCcEEEEEecccceeeEEe-cC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCc----ce
Confidence            45789999999 89999999999999999988777665 55 45556678999999999999999999998765    67


Q ss_pred             eEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccc
Q 005656           85 LRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE  164 (685)
Q Consensus        85 ~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (685)
                      ...+.+|...|++++|+|++++|++++.||.|++||+.+++....+.                                 
T Consensus       132 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~---------------------------------  178 (420)
T 3vl1_A          132 REIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI---------------------------------  178 (420)
T ss_dssp             EEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEE---------------------------------
T ss_pred             eeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEc---------------------------------
Confidence            77778999999999999999999999999999999998776554442                                 


Q ss_pred             cCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccccc
Q 005656          165 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMS  244 (685)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~  244 (685)
                                                         .|...|.+++|+|+++++++|+.||.|++||+.++.....+....
T Consensus       179 -----------------------------------~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~  223 (420)
T 3vl1_A          179 -----------------------------------GHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKE  223 (420)
T ss_dssp             -----------------------------------CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTT
T ss_pred             -----------------------------------CCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCC
Confidence                                               678899999999999999999999999999999998776664210


Q ss_pred             cc----------------ccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec--CCceeEEEEeecCC
Q 005656          245 ER----------------SNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV--GCSLVKIVYHRVNG  306 (685)
Q Consensus       245 ~~----------------~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~i~~~~~~~~~~  306 (685)
                      ..                ....|...+.+++|+|+++++++++.||.|++||+++++....+..  ...+.+++|+|++.
T Consensus       224 ~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  303 (420)
T 3vl1_A          224 NPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNA  303 (420)
T ss_dssp             BTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCT
T ss_pred             CCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCC
Confidence            00                0001234455555678999999999999999999999887776653  47899999999999


Q ss_pred             -EEEEEeCCCeEEEEEcCCCe-eEEEEec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc----------eeeEE
Q 005656          307 -LLATVADDLVIRLFDVVALR-MVRKFEG-HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR----------QIDAI  373 (685)
Q Consensus       307 -~l~~~~~dg~I~i~d~~~~~-~~~~~~~-h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~----------~i~~~  373 (685)
                       +|++|+.||.|++||+.+++ ++..+.+ |...|+++.| +++++|++++.||.|++|++....          .....
T Consensus       304 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~  382 (420)
T 3vl1_A          304 NYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLV  382 (420)
T ss_dssp             TEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEEC
T ss_pred             CEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEc
Confidence             99999999999999999874 4777776 6677888755 578899999999999999988732          12222


Q ss_pred             eeccceEEEEEcCCCC---eEEEEEeCCCeEEEEEcC
Q 005656          374 HVDVSITALSLSPNMD---VLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       374 ~~~~~v~~v~~spdg~---~Lat~~~d~~~I~lW~~~  407 (685)
                      .+...|.+++|+|++.   .|++++.+| .+.+|+..
T Consensus       383 ~~~~~v~~~~~s~~~~~~g~l~a~g~~g-~~~~~~~~  418 (420)
T 3vl1_A          383 SNDDAVSQFCYVSDDESNGEVLEVGKNN-FCALYNLS  418 (420)
T ss_dssp             CSSCCCCEEEEECCSSSSCEEEEEETTT-EEEEEESC
T ss_pred             cCCcceEEEEEccCCCCcceEEEEcCCc-eEEEEecc
Confidence            3445599999999999   677777676 99999853

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-39  Score=331.41  Aligned_cols=298  Identities=14%  Similarity=0.196  Sum_probs=231.9

Q ss_pred             CCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEec-cc-CCCCCeEEEEecCCCEEEEEe
Q 005656           34 KRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFR-SG-HSAPPLCIRFYANGRHILSAG  111 (685)
Q Consensus        34 ~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~-~~-h~~~v~~i~~~~~~~~l~s~s  111 (685)
                      +.+++..+. +|.++|.+++|+|+  +|++|+.|++|++|++..+..  .....+ .+ |..+|.+++|+|++++|++++
T Consensus         3 ~~~~~~~~~-~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~--~~~~~~~~~~h~~~v~~v~~sp~~~~las~s   77 (330)
T 2hes_X            3 SINLIKSLK-LYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF--TLIDVLDETAHKKAIRSVAWRPHTSLLAAGS   77 (330)
T ss_dssp             CCEEEEEEE-CCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC--EEEEEECTTCCCSCEEEEEECTTSSEEEEEE
T ss_pred             ccccceeec-cCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe--EEEEEEecCCccCCEEEEEECCCCCEEEEEe
Confidence            456677887 99999999999987  999999999999999876421  334443 34 999999999999999999999


Q ss_pred             CCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccC
Q 005656          112 QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLG  191 (685)
Q Consensus       112 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~  191 (685)
                      .|++|++|++....... .                                                            .
T Consensus        78 ~D~~v~iw~~~~~~~~~-~------------------------------------------------------------~   96 (330)
T 2hes_X           78 FDSTVSIWAKEESADRT-F------------------------------------------------------------E   96 (330)
T ss_dssp             TTSCEEEEEC--------C------------------------------------------------------------C
T ss_pred             CCCcEEEEEcccCcCcc-c------------------------------------------------------------c
Confidence            99999999985321000 0                                                            0


Q ss_pred             ceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCC-c---cccccccccccccCCCCcCEEEEEEcCCCCEE
Q 005656          192 EHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG-I---SRGSYLDMSERSNYAHNGEVVGVACDSTNTLM  267 (685)
Q Consensus       192 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~-~---~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l  267 (685)
                      ........+|...|.+++|+|+|+++++|+.||.|++||+... .   ....+        .+|...|.+++|+|++.+|
T Consensus        97 ~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~--------~~h~~~v~~v~~~p~~~~l  168 (330)
T 2hes_X           97 MDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVL--------QEHSQDVKHVIWHPSEALL  168 (330)
T ss_dssp             CEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEE--------CCCSSCEEEEEECSSSSEE
T ss_pred             ceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEe--------ccCCCceEEEEECCCCCEE
Confidence            0000111267889999999999999999999999999999543 2   22222        3899999999999999999


Q ss_pred             EEEECCCeEEEEECCCC--ceEEEeec-CCceeEEEEeec--CCEEEEEeCCCeEEEEEcCCC--------eeEEEEec-
Q 005656          268 ISAGYHGDIKVWDFKGR--DLKSRWEV-GCSLVKIVYHRV--NGLLATVADDLVIRLFDVVAL--------RMVRKFEG-  333 (685)
Q Consensus       268 ~s~s~dg~i~iwd~~~~--~~~~~~~~-~~~i~~~~~~~~--~~~l~~~~~dg~I~i~d~~~~--------~~~~~~~~-  333 (685)
                      ++++.|++|++||..++  +++..+.. ...|.+++|+|+  +.+|++|+.|++|++||+.++        .....+.+ 
T Consensus       169 ~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~  248 (330)
T 2hes_X          169 ASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDV  248 (330)
T ss_dssp             EEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSC
T ss_pred             EEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccc
Confidence            99999999999998766  45556654 488999999998  669999999999999999765        44555655 


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc--eeeEE-eecc--ceEEEEEcC--CCCeEEEEEeCCCeEEEEEc
Q 005656          334 HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR--QIDAI-HVDV--SITALSLSP--NMDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       334 h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~--~i~~~-~~~~--~v~~v~~sp--dg~~Lat~~~d~~~I~lW~~  406 (685)
                      |...|++++|++++ +|++++.||.|++|+..++.  .+... ..|.  .|.+++|+|  ++++||+++.|+ .|++|+.
T Consensus       249 h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg-~v~~W~~  326 (330)
T 2hes_X          249 HKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDG-IVNFWSL  326 (330)
T ss_dssp             CSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTS-EEEEEEC
T ss_pred             cccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCC-cEEEEEe
Confidence            99999999999765 89999999999999998774  23222 3333  699999999  789999999997 9999986


Q ss_pred             C
Q 005656          407 R  407 (685)
Q Consensus       407 ~  407 (685)
                      .
T Consensus       327 ~  327 (330)
T 2hes_X          327 E  327 (330)
T ss_dssp             -
T ss_pred             c
Confidence            4

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=6.7e-39  Score=343.16  Aligned_cols=312  Identities=16%  Similarity=0.310  Sum_probs=272.8

Q ss_pred             CCCc-EEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCC
Q 005656            1 MRGA-VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD   79 (685)
Q Consensus         1 h~~~-V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~   79 (685)
                      |.+. ++|+++  +|+ +|++|+.||.|++||+.+++.+..+. +|.+.|.+++|+  ++++++++.||+|++||+.++ 
T Consensus       117 h~~~v~~~~~~--~g~-~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~-  189 (445)
T 2ovr_B          117 HDDHVITCLQF--CGN-RIVSGSDDNTLKVWSAVTGKCLRTLV-GHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETG-  189 (445)
T ss_dssp             STTSCEEEEEE--ETT-EEEEEETTSCEEEEETTTCCEEEECC-CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTT-
T ss_pred             cCCCcEEEEEE--cCC-EEEEEECCCcEEEEECCCCcEEEEEc-CCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcC-
Confidence            5665 465554  577 99999999999999999999999998 999999999998  569999999999999999877 


Q ss_pred             CCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeec
Q 005656           80 GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC  159 (685)
Q Consensus        80 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (685)
                         +.+..+.+|...|.++.|+  ++.+++++.||+|++||+.+++....+.                            
T Consensus       190 ---~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~----------------------------  236 (445)
T 2ovr_B          190 ---ECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLM----------------------------  236 (445)
T ss_dssp             ---EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEE----------------------------
T ss_pred             ---cEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEc----------------------------
Confidence               7778888999999999996  5689999999999999998776554442                            


Q ss_pred             ccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccc
Q 005656          160 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGS  239 (685)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~  239 (685)
                                                              .+...+.++++  +++++++|+.||.|++||+.++.....
T Consensus       237 ----------------------------------------~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~  274 (445)
T 2ovr_B          237 ----------------------------------------GHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHT  274 (445)
T ss_dssp             ----------------------------------------CCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEE
T ss_pred             ----------------------------------------CCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEE
Confidence                                                    56778899988  789999999999999999999887776


Q ss_pred             cccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEE
Q 005656          240 YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIR  318 (685)
Q Consensus       240 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~  318 (685)
                      +.        +|...|.++.|  ++.++++++.||.|++||+.+++.+..+..+ ..+.++.+  +++++++|+.||.|+
T Consensus       275 ~~--------~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~  342 (445)
T 2ovr_B          275 LQ--------GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVK  342 (445)
T ss_dssp             EC--------CCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEE
T ss_pred             ec--------CCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEE
Confidence            64        89999999999  7889999999999999999999988887655 55666655  578999999999999


Q ss_pred             EEEcCCCeeEEEEec---CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEe------eccceEEEEEcCCCC
Q 005656          319 LFDVVALRMVRKFEG---HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH------VDVSITALSLSPNMD  389 (685)
Q Consensus       319 i~d~~~~~~~~~~~~---h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~------~~~~v~~v~~spdg~  389 (685)
                      +||+.+++.+..+.+   |...|++++|+  +++|++|+.||.|++||+.+++.+..+.      +...|++++|+|++.
T Consensus       343 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  420 (445)
T 2ovr_B          343 IWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKL  420 (445)
T ss_dssp             EEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEE
T ss_pred             EEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEE
Confidence            999999999999987   88899999995  6899999999999999999999998883      334599999999999


Q ss_pred             eEEEEEeCCC---eEEEEEcCC
Q 005656          390 VLATAHVDQN---GVYLWVNRC  408 (685)
Q Consensus       390 ~Lat~~~d~~---~I~lW~~~~  408 (685)
                      +|++++.||.   .|++|+...
T Consensus       421 ~la~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          421 VCAVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             EEEEECSSSSSCCEEEEEECCC
T ss_pred             EEEEcccCCCCccEEEEEECCC
Confidence            9999999972   399998654

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.4e-39  Score=368.40  Aligned_cols=286  Identities=21%  Similarity=0.310  Sum_probs=249.7

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCC-----eeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEe
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR-----RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF   75 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~-----~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~   75 (685)
                      |++.|++++|+|++..+|+||+.||+|++||+.+.     .....+. +|...|.+++|+|++++|+||+.|++|++||+
T Consensus       381 H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~  459 (694)
T 3dm0_A          381 HTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLT-GHSHFVEDVVLSSDGQFALSGSWDGELRLWDL  459 (694)
T ss_dssp             CSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             CCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence            89999999999987559999999999999999763     4456666 99999999999999999999999999999999


Q ss_pred             cCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCcee
Q 005656           76 DTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI  155 (685)
Q Consensus        76 ~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (685)
                      .++    .....+.+|...|.+++|+|++++|++++.|++|++||+.........                         
T Consensus       460 ~~~----~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~-------------------------  510 (694)
T 3dm0_A          460 AAG----VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTIS-------------------------  510 (694)
T ss_dssp             TTT----EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC-------------------------
T ss_pred             CCC----cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeec-------------------------
Confidence            876    677788899999999999999999999999999999997433211110                         


Q ss_pred             eeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCC--CEEEEEecCCcEEEEECCC
Q 005656          156 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG--NFAVLGTAGGWIERFNLQS  233 (685)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~g~~dg~i~~~d~~~  233 (685)
                                                              .....|...|.+++|+|++  ..+++|+.||.|++||+.+
T Consensus       511 ----------------------------------------~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~  550 (694)
T 3dm0_A          511 ----------------------------------------EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN  550 (694)
T ss_dssp             ----------------------------------------SSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT
T ss_pred             ----------------------------------------cCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCC
Confidence                                                    0112577889999999987  6899999999999999999


Q ss_pred             CccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeC
Q 005656          234 GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVAD  313 (685)
Q Consensus       234 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  313 (685)
                      +.....+.        +|.+.|++++|+|++++|++++.||+|++||+.+++.+..+..+..+.+++|+|++.++++++ 
T Consensus       551 ~~~~~~~~--------~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-  621 (694)
T 3dm0_A          551 CKLRSTLA--------GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAAT-  621 (694)
T ss_dssp             CCEEEEEC--------CCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEE-
T ss_pred             CcEEEEEc--------CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEc-
Confidence            88776654        899999999999999999999999999999999999998888889999999999998888776 


Q ss_pred             CCeEEEEEcCCCeeEEEEecCC-------------------CCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005656          314 DLVIRLFDVVALRMVRKFEGHT-------------------DRITDFCFSEDGKWLLSSGMDGSLRIWDVI  365 (685)
Q Consensus       314 dg~I~i~d~~~~~~~~~~~~h~-------------------~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~  365 (685)
                      ++.|++||+.+++.+..+..+.                   ..+++++|||||++|++|+.||+|++|++.
T Consensus       622 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          622 EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            5569999999999888775432                   137899999999999999999999999985

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=4.6e-39  Score=371.67  Aligned_cols=324  Identities=15%  Similarity=0.200  Sum_probs=281.7

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG   80 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~   80 (685)
                      |+++|++++|+|+|+ +||+|+.||.|+|||+.+++.+..+. +|.++|++++|+|++++|++++.||.|++|++.++  
T Consensus        12 h~~~v~~i~~sp~~~-~la~~~~~g~v~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~--   87 (814)
T 3mkq_A           12 RSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQVEVRSIQ-VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG--   87 (814)
T ss_dssp             ECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC--
T ss_pred             CCCceEEEEECCCCC-EEEEEeCCCEEEEEECCCCceEEEEe-cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC--
Confidence            788999999999999 99999999999999999999999998 99999999999999999999999999999999877  


Q ss_pred             CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCc-eeeEechhhHHHHHhhccccccccccCceeeeec
Q 005656           81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ-QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC  159 (685)
Q Consensus        81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (685)
                        +.+..+.+|...|++++|+|++++|++++.||.|++||+.++. ....+.                            
T Consensus        88 --~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~----------------------------  137 (814)
T 3mkq_A           88 --EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE----------------------------  137 (814)
T ss_dssp             --CEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEE----------------------------
T ss_pred             --cEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEc----------------------------
Confidence              6777788999999999999999999999999999999997662 222221                            


Q ss_pred             ccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEcc-CCCEEEEEecCCcEEEEECCCCcccc
Q 005656          160 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQSGISRG  238 (685)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~~~d~~~~~~~~  238 (685)
                                                              .+...+.+++|+| +++.+++|+.+|.|++||+.++....
T Consensus       138 ----------------------------------------~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~  177 (814)
T 3mkq_A          138 ----------------------------------------GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF  177 (814)
T ss_dssp             ----------------------------------------CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSE
T ss_pred             ----------------------------------------CCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccee
Confidence                                                    5678899999999 89999999999999999998877666


Q ss_pred             ccccccccccCCCCcCEEEEEEcC--CCCEEEEEECCCeEEEEECCCCceEEEeec-CCceeEEEEeecCCEEEEEeCCC
Q 005656          239 SYLDMSERSNYAHNGEVVGVACDS--TNTLMISAGYHGDIKVWDFKGRDLKSRWEV-GCSLVKIVYHRVNGLLATVADDL  315 (685)
Q Consensus       239 ~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg  315 (685)
                      .+..       .|...+.+++|+|  ++.++++++.||.|++||+.+++....+.. ...+.+++|+|++.++++++.||
T Consensus       178 ~~~~-------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  250 (814)
T 3mkq_A          178 TLTT-------GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG  250 (814)
T ss_dssp             EEEC-------CCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTS
T ss_pred             EEec-------CCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence            5531       4558899999999  899999999999999999999998888874 48899999999999999999999


Q ss_pred             eEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCC--EEEEEeCCCcEEEEEcCCCceeeEEe-------------------
Q 005656          316 VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK--WLLSSGMDGSLRIWDVILARQIDAIH-------------------  374 (685)
Q Consensus       316 ~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~--~l~s~s~Dg~I~iwd~~~~~~i~~~~-------------------  374 (685)
                      .|++||+.+++.+..+..|...|.+++|+|+|+  ++++++ |+.+.+|++..+.....+.                   
T Consensus       251 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  329 (814)
T 3mkq_A          251 TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIF  329 (814)
T ss_dssp             CEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE-TTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEE
T ss_pred             eEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe-CCCEEEEEcCCCCceeEECCCCCEEEECcccccceeee
Confidence            999999999999999999999999999999987  455554 6678899876543221111                   


Q ss_pred             -------------------------eccceEEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656          375 -------------------------VDVSITALSLSPNMDVLATAHVDQNGVYLWVNRC  408 (685)
Q Consensus       375 -------------------------~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~  408 (685)
                                               ....+++++|+|+|++|++++ ++ .+.+|+...
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~-~~~i~~~~~  386 (814)
T 3mkq_A          330 TAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DG-EYVIYTALA  386 (814)
T ss_dssp             EEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TT-EEEEEETTT
T ss_pred             eeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CC-EEEEEECcc
Confidence                                     112378999999999999998 65 899998543

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.2e-38  Score=325.95  Aligned_cols=309  Identities=21%  Similarity=0.313  Sum_probs=251.6

Q ss_pred             EEeCCCc--EEEEeC--CCCeeeEEeecccccCeeEEEEeCC-CcEEEEecCCCcEEEEEecCCCCC-CceeEecccCCC
Q 005656           20 SGASSGV--ISIWNL--EKRRLQSVIREAHDNAIISLHFFAN-EPVLMSASADNSIKMWIFDTTDGD-PRLLRFRSGHSA   93 (685)
Q Consensus        20 tg~~dg~--I~vwd~--~~~~~~~~~~~~h~~~V~~l~~sp~-~~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~~~h~~   93 (685)
                      +|...|+  +.++..  ++.++..+++ ||.+.|++|+|+|+ +++|+|||.|++|++||+...... ..+...+.+|..
T Consensus         9 ~g~d~g~~~~~~~~~~~~~~~l~~tL~-GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~   87 (340)
T 4aow_A            9 SGVDLGTENLYFQSMMTEQMTLRGTLK-GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSH   87 (340)
T ss_dssp             -----------------CEEEEEEEEC-CCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSS
T ss_pred             cccCCCCccEEEEEccCCceEEEEEEC-CccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCC
Confidence            4444444  333333  3345667787 99999999999997 579999999999999999875432 245667889999


Q ss_pred             CCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEE
Q 005656           94 PPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTC  173 (685)
Q Consensus        94 ~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (685)
                      .|.+++|+|++++|++++.|+.|++|+...........                                          
T Consensus        88 ~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~------------------------------------------  125 (340)
T 4aow_A           88 FVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV------------------------------------------  125 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE------------------------------------------
T ss_pred             CEEEEEECCCCCEEEEEcccccceEEeecccceeeeec------------------------------------------
Confidence            99999999999999999999999999987665443332                                          


Q ss_pred             EcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCc
Q 005656          174 HMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNG  253 (685)
Q Consensus       174 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~  253 (685)
                                                .+...+..+.++++++++++|+.||.+++||+.........       ..+|..
T Consensus       126 --------------------------~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~-------~~~~~~  172 (340)
T 4aow_A          126 --------------------------GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQ-------DESHSE  172 (340)
T ss_dssp             --------------------------CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC-------SSSCSS
T ss_pred             --------------------------CCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEE-------eccccC
Confidence                                      44567888899999999999999999999998876554332       238999


Q ss_pred             CEEEEEEcCCC--CEEEEEECCCeEEEEECCCCceEEEeec-CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEE
Q 005656          254 EVVGVACDSTN--TLMISAGYHGDIKVWDFKGRDLKSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRK  330 (685)
Q Consensus       254 ~v~~l~~~~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~  330 (685)
                      .+..++|++++  .++++++.|+.|++||+.+++....+.. ..+|.+++|+|++++|++|+.|+.|++||+.+.+.+..
T Consensus       173 ~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~  252 (340)
T 4aow_A          173 WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYT  252 (340)
T ss_dssp             CEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEE
T ss_pred             cccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeee
Confidence            99999998765  5788999999999999999998887765 48899999999999999999999999999999999999


Q ss_pred             EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEe----------eccceEEEEEcCCCCeEEEEEeCCCe
Q 005656          331 FEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH----------VDVSITALSLSPNMDVLATAHVDQNG  400 (685)
Q Consensus       331 ~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~----------~~~~v~~v~~spdg~~Lat~~~d~~~  400 (685)
                      +.++ ..|++++|+|++.++ +++.|+.|++||+.++..+..+.          +...|++++|+|+|++|++++.|+ .
T Consensus       253 ~~~~-~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg-~  329 (340)
T 4aow_A          253 LDGG-DIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDN-L  329 (340)
T ss_dssp             EECS-SCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTS-C
T ss_pred             ecCC-ceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCC-E
Confidence            8855 679999999988655 55679999999999988776654          234499999999999999999997 9


Q ss_pred             EEEEEcC
Q 005656          401 VYLWVNR  407 (685)
Q Consensus       401 I~lW~~~  407 (685)
                      |+||+.+
T Consensus       330 v~iW~~~  336 (340)
T 4aow_A          330 VRVWQVT  336 (340)
T ss_dssp             EEEEEEE
T ss_pred             EEEEeCC
Confidence            9999864

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=5.1e-39  Score=338.49  Aligned_cols=302  Identities=10%  Similarity=0.137  Sum_probs=252.3

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe------eeEEeecccccCeeEEEEeCC----C---cEEEEecCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR------LQSVIREAHDNAIISLHFFAN----E---PVLMSASAD   67 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~------~~~~~~~~h~~~V~~l~~sp~----~---~~l~s~s~D   67 (685)
                      |+++|++++|+|  + +|++|+.||.|++||+.+++      ....+. +|...|++++|+|+    +   ++|++++.|
T Consensus        15 h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~d   90 (397)
T 1sq9_A           15 HDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELCLVATTSFS   90 (397)
T ss_dssp             SSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEEEEEEEETT
T ss_pred             hhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCCCcceEEe-cCCCcEEEEEEecccccCCccccEEEEEcCC
Confidence            889999999999  4 89999999999999999987      677777 89999999999999    9   999999999


Q ss_pred             CcEEEEEecCCCCCCc-eeEecccC-----CCCCeEEEEe----cCCCE-EEEEeCCCceEEEEeec------CceeeEe
Q 005656           68 NSIKMWIFDTTDGDPR-LLRFRSGH-----SAPPLCIRFY----ANGRH-ILSAGQDRAFRLFSVIQ------DQQSREL  130 (685)
Q Consensus        68 ~~v~iWd~~~~~~~~~-~~~~~~~h-----~~~v~~i~~~----~~~~~-l~s~s~dg~i~vwd~~~------~~~~~~~  130 (685)
                      +.|++|++..+....+ .+..+.+|     ...|.+++|+    |++++ |++++.||.|++||+.+      +....  
T Consensus        91 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--  168 (397)
T 1sq9_A           91 GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN--  168 (397)
T ss_dssp             SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC--
T ss_pred             CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceee--
Confidence            9999999988732111 16667788     5999999999    99999 99999999999999987      32221  


Q ss_pred             chhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEE
Q 005656          131 SQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTI  210 (685)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~  210 (685)
                                          ..+...+              ..                    .......+...+.+++|
T Consensus       169 --------------------~~~~~~~--------------~~--------------------~~~~~~~~~~~i~~~~~  194 (397)
T 1sq9_A          169 --------------------WSPTLEL--------------QG--------------------TVESPMTPSQFATSVDI  194 (397)
T ss_dssp             --------------------CCCEEEE--------------EE--------------------EECCSSSSCCCCCEEEE
T ss_pred             --------------------ccCccee--------------ee--------------------eeccccCCCCCceEEEE
Confidence                                0000000              00                    00011256788999999


Q ss_pred             ccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCC---CcCEEEEEEcCCCCEEEEEECC---CeEEEEECCCC
Q 005656          211 SACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAH---NGEVVGVACDSTNTLMISAGYH---GDIKVWDFKGR  284 (685)
Q Consensus       211 s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h---~~~v~~l~~~~~~~~l~s~s~d---g~i~iwd~~~~  284 (685)
                      +|++ ++++|+.+|.|++||+.++.....+..     ..+|   ...|.+++|+|++++|++++.|   |.|++||+.++
T Consensus       195 ~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~  268 (397)
T 1sq9_A          195 SERG-LIATGFNNGTVQISELSTLRPLYNFES-----QHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG  268 (397)
T ss_dssp             CTTS-EEEEECTTSEEEEEETTTTEEEEEEEC-----CC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC
T ss_pred             CCCc-eEEEEeCCCcEEEEECCCCceeEEEec-----cccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence            9999 999999999999999999887766641     0128   8999999999999999999999   99999999999


Q ss_pred             ceEEEee--------------cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEe------cC----------
Q 005656          285 DLKSRWE--------------VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE------GH----------  334 (685)
Q Consensus       285 ~~~~~~~--------------~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~------~h----------  334 (685)
                      +.+..+.              +...+.+++|+|++++|++++.||.|++||+.+++.+..+.      +|          
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  348 (397)
T 1sq9_A          269 ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEH  348 (397)
T ss_dssp             CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTT
T ss_pred             cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccc
Confidence            9888877              45889999999999999999999999999999999999999      88          


Q ss_pred             -----CCCeEEEEEcCCC----------CEEEEEeCCCcEEEEEcCCCc
Q 005656          335 -----TDRITDFCFSEDG----------KWLLSSGMDGSLRIWDVILAR  368 (685)
Q Consensus       335 -----~~~I~~l~~spdg----------~~l~s~s~Dg~I~iwd~~~~~  368 (685)
                           ...|++++|+|+|          ++|++++.||.|++|++.+|+
T Consensus       349 ~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          349 GDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             SCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             cccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence                 9999999999998          799999999999999998764

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.4e-38  Score=326.84  Aligned_cols=282  Identities=12%  Similarity=0.208  Sum_probs=250.4

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEee----cccccCeeEEEEeCCCcEEEEecCCCcEEEEEec
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR----EAHDNAIISLHFFANEPVLMSASADNSIKMWIFD   76 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~----~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~   76 (685)
                      |.++|++++|+|+|+ +|++++ ||.|++||+.++.....+.    .+|...|.+++|+|++++|++++.|+.|++|++.
T Consensus        50 h~~~v~~~~~~~~~~-~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~  127 (337)
T 1gxr_A           50 HGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA  127 (337)
T ss_dssp             CSSCCCEEEECSSSS-EEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred             CCCceEEEEEecCCc-EEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECC
Confidence            788999999999999 899988 9999999998765332222    1689999999999999999999999999999987


Q ss_pred             CCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceee
Q 005656           77 TTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA  156 (685)
Q Consensus        77 ~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (685)
                      .+.  ......+.+|...|.+++|+|+++++++++.||.|++||+.+++....+.                         
T Consensus       128 ~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~-------------------------  180 (337)
T 1gxr_A          128 APT--PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ-------------------------  180 (337)
T ss_dssp             CC----EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-------------------------
T ss_pred             CCC--cceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeee-------------------------
Confidence            653  23566677899999999999999999999999999999998776544442                         


Q ss_pred             eecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcc
Q 005656          157 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS  236 (685)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~  236 (685)
                                                                 .+...+.+++|+|+++++++++.+|.|++||+.++..
T Consensus       181 -------------------------------------------~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~  217 (337)
T 1gxr_A          181 -------------------------------------------GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ  217 (337)
T ss_dssp             -------------------------------------------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred             -------------------------------------------cccCceEEEEECCCCCEEEEEecCCcEEEEECCCCce
Confidence                                                       5677899999999999999999999999999999887


Q ss_pred             ccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCe
Q 005656          237 RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLV  316 (685)
Q Consensus       237 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  316 (685)
                      ...+         .|...+.+++|+|+++++++++.||.|++||+.+++......+...+.+++|+|++++|++++.||.
T Consensus       218 ~~~~---------~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  288 (337)
T 1gxr_A          218 LQQH---------DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL  288 (337)
T ss_dssp             EEEE---------ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             Eeee---------cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCc
Confidence            6655         5778899999999999999999999999999999888776667799999999999999999999999


Q ss_pred             EEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005656          317 IRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV  364 (685)
Q Consensus       317 I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~  364 (685)
                      |++||+.+++.+... .|...|++++|+|++++|++++.||.|++|++
T Consensus       289 i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          289 LNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence            999999999888554 48899999999999999999999999999996

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=5.8e-38  Score=337.84  Aligned_cols=335  Identities=16%  Similarity=0.264  Sum_probs=268.6

Q ss_pred             CCCc-EEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCC
Q 005656            1 MRGA-VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD   79 (685)
Q Consensus         1 h~~~-V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~   79 (685)
                      |.+. |+|++|+  +. +|++|+.||.|++||+.+++.+..+. +|.+.|.+++|+|++ +|++|+.||+|++||+.++ 
T Consensus       120 h~~~v~~~~~~~--~~-~l~sgs~dg~i~vwd~~~~~~~~~~~-~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~-  193 (464)
T 3v7d_B          120 HMTSVITCLQFE--DN-YVITGADDKMIRVYDSINKKFLLQLS-GHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKG-  193 (464)
T ss_dssp             CSSSCEEEEEEE--TT-EEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTT-
T ss_pred             CCCCcEEEEEEC--CC-EEEEEcCCCcEEEEECCCCcEEEEEe-CCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCC-
Confidence            5566 5777774  55 99999999999999999999999998 999999999999988 9999999999999999876 


Q ss_pred             CCCceeEecccCCCCCeEEEEec--CCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeee
Q 005656           80 GDPRLLRFRSGHSAPPLCIRFYA--NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF  157 (685)
Q Consensus        80 ~~~~~~~~~~~h~~~v~~i~~~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (685)
                         +.+..+.+|..+|.+++|++  +++++++++.||+|++||+.+...........                ..+....
T Consensus       194 ---~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~----------------~~~~~~~  254 (464)
T 3v7d_B          194 ---CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEH----------------DYPLVFH  254 (464)
T ss_dssp             ---EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------C----------------CSSEEES
T ss_pred             ---cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccC----------------CcceEee
Confidence               67888889999999999994  77899999999999999998765433221100                0000000


Q ss_pred             ecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccc
Q 005656          158 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR  237 (685)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~  237 (685)
                      .+.                             ...........+...+.++  +++++++++|+.||.|++||+.++...
T Consensus       255 ~~~-----------------------------~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~  303 (464)
T 3v7d_B          255 TPE-----------------------------ENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCL  303 (464)
T ss_dssp             CGG-----------------------------GCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEE
T ss_pred             ccC-----------------------------CCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence            000                             0000111112556666665  688999999999999999999998887


Q ss_pred             cccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCe
Q 005656          238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLV  316 (685)
Q Consensus       238 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~  316 (685)
                      ..+.        +|...|.+++|+|+++++++++.||.|++||+.+++.+..+..+ ..+.++.++  ++++++++.||.
T Consensus       304 ~~~~--------~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~  373 (464)
T 3v7d_B          304 YILS--------GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGS  373 (464)
T ss_dssp             EEEC--------CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSE
T ss_pred             EEec--------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCc
Confidence            7664        89999999999999999999999999999999999998888654 788899887  689999999999


Q ss_pred             EEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEE--eeccceEEEEEcCCCCeEEEE
Q 005656          317 IRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI--HVDVSITALSLSPNMDVLATA  394 (685)
Q Consensus       317 I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~--~~~~~v~~v~~spdg~~Lat~  394 (685)
                      |++||+.++....... |...+..++|+|++++|++++ ||.|++||+.+++++..+  .+...|++++|+  ++.++++
T Consensus       374 v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~  449 (464)
T 3v7d_B          374 IRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK--GKTLVAA  449 (464)
T ss_dssp             EEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE--TTEEEEE
T ss_pred             EEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec--CCEEEEE
Confidence            9999999988766664 777888999999999999998 899999999999998763  334459999997  5555555


Q ss_pred             EeCCCeEEEEE
Q 005656          395 HVDQNGVYLWV  405 (685)
Q Consensus       395 ~~d~~~I~lW~  405 (685)
                      +.+++.+++|.
T Consensus       450 ~~~~g~~~i~~  460 (464)
T 3v7d_B          450 VEKDGQSFLEI  460 (464)
T ss_dssp             EEETTEEEEEE
T ss_pred             EEeCCeEEEEE
Confidence            55554666664

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2e-39  Score=336.07  Aligned_cols=293  Identities=15%  Similarity=0.191  Sum_probs=245.5

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeC---CCcEEEEeCCCCeeeEEeecccccCeeEEEEeCC---CcEEEEecCCCcEEEEE
Q 005656            1 MRGAVTALAFSSDGQPLLASGAS---SGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN---EPVLMSASADNSIKMWI   74 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~---dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~---~~~l~s~s~D~~v~iWd   74 (685)
                      |.++|++++|+|+|..++++|+.   ||.|++||+.+++.......+|...|.+++|+|+   +.+|++++.||.|++|+
T Consensus        17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd   96 (357)
T 3i2n_A           17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWN   96 (357)
T ss_dssp             CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEEC
T ss_pred             CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEe
Confidence            78899999999999757778876   9999999999988776655589999999999998   69999999999999999


Q ss_pred             ecCCCCCCceeEecccCCCCCeEEEE------ecCCCEEEEEeCCCceEEEEeecCc-eeeEechhhHHHHHhhcccccc
Q 005656           75 FDTTDGDPRLLRFRSGHSAPPLCIRF------YANGRHILSAGQDRAFRLFSVIQDQ-QSRELSQRHVAKRARKLKMKEE  147 (685)
Q Consensus        75 ~~~~~~~~~~~~~~~~h~~~v~~i~~------~~~~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~  147 (685)
                      +..+.   ..+..+.+|...|.++.|      +|++++|++++.||.|++||+.++. ....+...              
T Consensus        97 ~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~--------------  159 (357)
T 3i2n_A           97 LEAPE---MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPV--------------  159 (357)
T ss_dssp             TTSCS---SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCC--------------
T ss_pred             CCCCC---ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceecccc--------------
Confidence            88763   256677899999999965      6789999999999999999998765 23322100              


Q ss_pred             ccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEE----EccCCCEEEEEecC
Q 005656          148 ELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACT----ISACGNFAVLGTAG  223 (685)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~----~s~~g~~l~~g~~d  223 (685)
                                                                        .......+.+++    |+|+++++++|+.+
T Consensus       160 --------------------------------------------------~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d  189 (357)
T 3i2n_A          160 --------------------------------------------------QGENKRDCWTVAFGNAYNQEERVVCAGYDN  189 (357)
T ss_dssp             --------------------------------------------------TTSCCCCEEEEEEECCCC-CCCEEEEEETT
T ss_pred             --------------------------------------------------CCCCCCceEEEEEEeccCCCCCEEEEEccC
Confidence                                                              002244678887    78999999999999


Q ss_pred             CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcC---CCCEEEEEECCCeEEEEECCCCceEEEe------ecCC
Q 005656          224 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS---TNTLMISAGYHGDIKVWDFKGRDLKSRW------EVGC  294 (685)
Q Consensus       224 g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~------~~~~  294 (685)
                      |.|++||++++......         .|...|.+++|+|   ++.++++++.||.|++||+++++....+      .+..
T Consensus       190 ~~i~i~d~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  260 (357)
T 3i2n_A          190 GDIKLFDLRNMALRWET---------NIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKS  260 (357)
T ss_dssp             SEEEEEETTTTEEEEEE---------ECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSS
T ss_pred             CeEEEEECccCceeeec---------CCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcC
Confidence            99999999998765433         7889999999999   8999999999999999999877654443      3558


Q ss_pred             ceeEEEEeecCC-EEEEEeCCCeEEEEEcCCC-------------------eeEEEEecCCCCeEEEEEcCCCCEEE-EE
Q 005656          295 SLVKIVYHRVNG-LLATVADDLVIRLFDVVAL-------------------RMVRKFEGHTDRITDFCFSEDGKWLL-SS  353 (685)
Q Consensus       295 ~i~~~~~~~~~~-~l~~~~~dg~I~i~d~~~~-------------------~~~~~~~~h~~~I~~l~~spdg~~l~-s~  353 (685)
                      .+.+++|+|++. ++++++.||.|++||+.++                   +.+..+.+|...|++++|+|++++|+ ++
T Consensus       261 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~  340 (357)
T 3i2n_A          261 TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCS  340 (357)
T ss_dssp             CEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEE
T ss_pred             CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEe
Confidence            999999999998 8999999999999999854                   56788899999999999999999998 89


Q ss_pred             eCCCcEEEEEcCCCce
Q 005656          354 GMDGSLRIWDVILARQ  369 (685)
Q Consensus       354 s~Dg~I~iwd~~~~~~  369 (685)
                      +.||.|++||+.+.+.
T Consensus       341 ~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          341 SFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             ETTSEEEEEEECC---
T ss_pred             cCCCcEEEEECCCccc
Confidence            9999999999987654

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2e-38  Score=330.60  Aligned_cols=291  Identities=12%  Similarity=0.160  Sum_probs=247.7

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe--eeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR--LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT   78 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~   78 (685)
                      |+++|++++|+|+|+ +||+|+.||.|++||+.+++  .+..+. +|...|.+++|+|++++|++++.|+.|++|++..+
T Consensus         7 ~~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~   84 (372)
T 1k8k_C            7 LVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHELK-EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR   84 (372)
T ss_dssp             CSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEEEEE-CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT
T ss_pred             cCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCcEEeeeeec-CCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCC
Confidence            789999999999999 99999999999999999987  788887 89999999999999999999999999999999765


Q ss_pred             CCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeee
Q 005656           79 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD  158 (685)
Q Consensus        79 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (685)
                      .  ........+|...|.+++|+|++++|++++.||.|++||+..........                           
T Consensus        85 ~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~---------------------------  135 (372)
T 1k8k_C           85 T--WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK---------------------------  135 (372)
T ss_dssp             E--EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE---------------------------
T ss_pred             e--eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeee---------------------------
Confidence            2  12233446799999999999999999999999999999998765321110                           


Q ss_pred             cccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECC------
Q 005656          159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ------  232 (685)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~------  232 (685)
                                                           .....+...+.+++|+|+++++++|+.+|.|++||+.      
T Consensus       136 -------------------------------------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~  178 (372)
T 1k8k_C          136 -------------------------------------HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEE  178 (372)
T ss_dssp             -------------------------------------EECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSC
T ss_pred             -------------------------------------eeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccc
Confidence                                                 0001567889999999999999999999999999965      


Q ss_pred             ------------CCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEE
Q 005656          233 ------------SGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKI  299 (685)
Q Consensus       233 ------------~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~  299 (685)
                                  .+.....+        ..|...|.+++|+|++++|++++.||.|++||+.+++.+..+..+ .++.++
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~  250 (372)
T 1k8k_C          179 RPAPTPWGSKMPFGELMFES--------SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAV  250 (372)
T ss_dssp             CCCCBTTBSCCCTTCEEEEC--------CCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEE
T ss_pred             cccccccccccchhhheEec--------CCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEE
Confidence                        33333333        278999999999999999999999999999999999988888765 689999


Q ss_pred             EEeecCCEEEEEeCCCeEEEEEcCC--Cee--------------------------------E------EEE-ecCCCCe
Q 005656          300 VYHRVNGLLATVADDLVIRLFDVVA--LRM--------------------------------V------RKF-EGHTDRI  338 (685)
Q Consensus       300 ~~~~~~~~l~~~~~dg~I~i~d~~~--~~~--------------------------------~------~~~-~~h~~~I  338 (685)
                      +|+|++.++++| .|+.|++|++.+  ++.                                .      ..+ .+|...|
T Consensus       251 ~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  329 (372)
T 1k8k_C          251 TFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSV  329 (372)
T ss_dssp             EEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCE
T ss_pred             EEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCc
Confidence            999999988888 899999999988  421                                0      223 4899999


Q ss_pred             EEEEEc-CCC---CEEEEEeCCCcEEEEEcCCCc
Q 005656          339 TDFCFS-EDG---KWLLSSGMDGSLRIWDVILAR  368 (685)
Q Consensus       339 ~~l~~s-pdg---~~l~s~s~Dg~I~iwd~~~~~  368 (685)
                      ++++|+ ++|   ++|++|+.||.|++|++.+++
T Consensus       330 ~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~  363 (372)
T 1k8k_C          330 SQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE  363 (372)
T ss_dssp             EEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred             ceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence            999966 677   999999999999999998754

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-37  Score=321.06  Aligned_cols=296  Identities=16%  Similarity=0.256  Sum_probs=258.7

Q ss_pred             eEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceE
Q 005656           38 QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFR  117 (685)
Q Consensus        38 ~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~  117 (685)
                      ...+. +|.+.|++++|+|++++|++++.||.|++||+..+    +.+..+.+|...|.+++|+|++++|++++.||.|+
T Consensus        25 ~~~l~-~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~   99 (369)
T 3zwl_B           25 AIKLT-GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG----ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIK   99 (369)
T ss_dssp             EEEEE-CCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTC----CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEE
T ss_pred             cEEEE-EeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc----hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence            34565 99999999999999999999999999999998876    67788889999999999999999999999999999


Q ss_pred             EEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecC
Q 005656          118 LFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRP  197 (685)
Q Consensus       118 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  197 (685)
                      +||+.+++....+                                                                   
T Consensus       100 iwd~~~~~~~~~~-------------------------------------------------------------------  112 (369)
T 3zwl_B          100 LWDVSNGQCVATW-------------------------------------------------------------------  112 (369)
T ss_dssp             EEETTTCCEEEEE-------------------------------------------------------------------
T ss_pred             EEECCCCcEEEEe-------------------------------------------------------------------
Confidence            9999877665544                                                                   


Q ss_pred             CCCCCCCeEEEEEccCCCEEEEEecC-----CcEEEEECCCCccccccccc---cccccCCCCc--CEEEEEEcCCCCEE
Q 005656          198 CPENPTAVKACTISACGNFAVLGTAG-----GWIERFNLQSGISRGSYLDM---SERSNYAHNG--EVVGVACDSTNTLM  267 (685)
Q Consensus       198 ~~~~~~~v~~~~~s~~g~~l~~g~~d-----g~i~~~d~~~~~~~~~~~~~---~~~~~~~h~~--~v~~l~~~~~~~~l  267 (685)
                        .+...+.+++|+|+++++++++.+     |.|.+||+..+.....+...   .......|.+  .+.+++|+|+++++
T Consensus       113 --~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  190 (369)
T 3zwl_B          113 --KSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYI  190 (369)
T ss_dssp             --ECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEE
T ss_pred             --ecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEE
Confidence              235679999999999999999999     99999999877654333211   1111224555  99999999999999


Q ss_pred             EEEECCCeEEEEECCC-CceEEEeec-CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcC
Q 005656          268 ISAGYHGDIKVWDFKG-RDLKSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE  345 (685)
Q Consensus       268 ~s~s~dg~i~iwd~~~-~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp  345 (685)
                      ++++.||.|++||+.+ +.....+.. ...+.+++|+|++.+|++++.|+.|++||+.+++.+..+. +...+..++|+|
T Consensus       191 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~  269 (369)
T 3zwl_B          191 IAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITP  269 (369)
T ss_dssp             EEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECS
T ss_pred             EEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecC
Confidence            9999999999999998 677777764 5889999999999999999999999999999999999888 788899999999


Q ss_pred             CCCEEEEEeCCC--------------cEEEEEcCCCceeeEEeecc-ceEEEEEcCCCCeEEEEEeCCCeEEEEEcCCC
Q 005656          346 DGKWLLSSGMDG--------------SLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWVNRCM  409 (685)
Q Consensus       346 dg~~l~s~s~Dg--------------~I~iwd~~~~~~i~~~~~~~-~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~~  409 (685)
                      +++++++++.++              .+++||+.+++.+..+..+. .|++++|+|+|++|++++.|+ .|++|+....
T Consensus       270 ~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg-~v~iw~~~~~  347 (369)
T 3zwl_B          270 LKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDG-FIRLHHFEKS  347 (369)
T ss_dssp             SSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS-EEEEEEECHH
T ss_pred             CCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCC-eEEEEECccc
Confidence            999999999888              89999999999999988655 499999999999999999997 9999997643

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2.4e-38  Score=331.74  Aligned_cols=287  Identities=15%  Similarity=0.208  Sum_probs=235.0

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEee-cccccCeeEEEEeC-CCcEEEEecCCCcEEEEEecCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR-EAHDNAIISLHFFA-NEPVLMSASADNSIKMWIFDTT   78 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~-~~h~~~V~~l~~sp-~~~~l~s~s~D~~v~iWd~~~~   78 (685)
                      |.+.|++++|+|+|..+||+|+.||.|+|||+.+++....+. .+|.+.|.+++|+| ++++|++++.|+.|++||+...
T Consensus        72 h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  151 (383)
T 3ei3_B           72 FDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS  151 (383)
T ss_dssp             CSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSC
T ss_pred             CCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCC
Confidence            788999999999993399999999999999999888777665 26999999999999 7799999999999999998742


Q ss_pred             CCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeee
Q 005656           79 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD  158 (685)
Q Consensus        79 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (685)
                        ....+....+|...|.+++|+|++++|++++.||.|++||+ +++....+.                           
T Consensus       152 --~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~---------------------------  201 (383)
T 3ei3_B          152 --VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEK---------------------------  201 (383)
T ss_dssp             --EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEE---------------------------
T ss_pred             --ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEec---------------------------
Confidence              11222333445688999999999999999999999999998 343333321                           


Q ss_pred             cccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCC-EEEEEecCCcEEEEECCCCccc
Q 005656          159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN-FAVLGTAGGWIERFNLQSGISR  237 (685)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~dg~i~~~d~~~~~~~  237 (685)
                                                               .+...|.+++|+|+++ ++++|+.||.|++||+.++...
T Consensus       202 -----------------------------------------~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  240 (383)
T 3ei3_B          202 -----------------------------------------LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK  240 (383)
T ss_dssp             -----------------------------------------CSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST
T ss_pred             -----------------------------------------cCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc
Confidence                                                     5678899999999999 9999999999999999984432


Q ss_pred             cccccccccccCCCCcCEEEEEEcC-CCCEEEEEECCCeEEEEECCCCceEEEeecC------------------CceeE
Q 005656          238 GSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYHGDIKVWDFKGRDLKSRWEVG------------------CSLVK  298 (685)
Q Consensus       238 ~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------------------~~i~~  298 (685)
                      ....     ...+|...|.+++|+| ++.+|++++.||.|++||+++++....+..+                  ..+..
T Consensus       241 ~~~~-----~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  315 (383)
T 3ei3_B          241 NSYI-----AEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIV  315 (383)
T ss_dssp             TCEE-----EEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEE
T ss_pred             cceE-----EEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceE
Confidence            2211     1117899999999999 9999999999999999999987765544421                  23344


Q ss_pred             EEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEec--CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005656          299 IVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG--HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL  366 (685)
Q Consensus       299 ~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~--h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~  366 (685)
                      ++++|++++  +|+.|+.|++||+.+++.+..+.+  |...+..++|+|++++|++|+ ||.|++||+.+
T Consensus       316 ~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          316 AGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             EECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             EEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            555666655  667899999999999999999987  567788889999999999997 99999999874

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=6.9e-38  Score=329.84  Aligned_cols=296  Identities=15%  Similarity=0.200  Sum_probs=253.5

Q ss_pred             eEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC--CCceeEecccCCCCCeEEEEecC----C---CEEE
Q 005656           38 QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG--DPRLLRFRSGHSAPPLCIRFYAN----G---RHIL  108 (685)
Q Consensus        38 ~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~--~~~~~~~~~~h~~~v~~i~~~~~----~---~~l~  108 (685)
                      ...+. +|.+.|++++|+|  ++|++++.||+|++|++.....  ....+..+.+|..+|.+++|+|+    +   ++|+
T Consensus         9 ~~~~~-~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~   85 (397)
T 1sq9_A            9 ANAGK-AHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA   85 (397)
T ss_dssp             EEESS-CSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             hhhhh-hhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence            34444 8999999999998  7999999999999999987631  12256777799999999999999    9   9999


Q ss_pred             EEeCCCceEEEEeecCce-----eeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEE
Q 005656          109 SAGQDRAFRLFSVIQDQQ-----SRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW  183 (685)
Q Consensus       109 s~s~dg~i~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  183 (685)
                      +++.||.|++|++.+++.     ...+.                                                    
T Consensus        86 s~~~dg~i~iw~~~~~~~~~~~~~~~~~----------------------------------------------------  113 (397)
T 1sq9_A           86 TTSFSGDLLFYRITREDETKKVIFEKLD----------------------------------------------------  113 (397)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEEEEC----------------------------------------------------
T ss_pred             EEcCCCCEEEEEccCCcccccccceeec----------------------------------------------------
Confidence            999999999999987764     22221                                                    


Q ss_pred             EcCccccCceeecCCCCC-----CCCeEEEEEc----cCCCE-EEEEecCCcEEEEECCC------Ccccc-----cccc
Q 005656          184 RLQNFVLGEHILRPCPEN-----PTAVKACTIS----ACGNF-AVLGTAGGWIERFNLQS------GISRG-----SYLD  242 (685)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~-----~~~v~~~~~s----~~g~~-l~~g~~dg~i~~~d~~~------~~~~~-----~~~~  242 (685)
                                      .+     ...|.+++|+    |++++ +++|+.+|.|++||+.+      +....     .+..
T Consensus       114 ----------------~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  177 (397)
T 1sq9_A          114 ----------------LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQG  177 (397)
T ss_dssp             ----------------CSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEE
T ss_pred             ----------------ccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeee
Confidence                            33     4789999999    99999 99999999999999988      55544     3210


Q ss_pred             ccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec-------CCceeEEEEeecCCEEEEEeCC-
Q 005656          243 MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV-------GCSLVKIVYHRVNGLLATVADD-  314 (685)
Q Consensus       243 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~~d-  314 (685)
                      . ......|...|.+++|+|++ ++++++.||.|++||+++++.+..+..       ...+.+++|+|++++|++++.| 
T Consensus       178 ~-~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~  255 (397)
T 1sq9_A          178 T-VESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN  255 (397)
T ss_dssp             E-ECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET
T ss_pred             e-eccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCC
Confidence            0 00002688999999999999 999999999999999999999888876       7899999999999999999999 


Q ss_pred             --CeEEEEEcCCCeeEEEEec-------------CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEe-----
Q 005656          315 --LVIRLFDVVALRMVRKFEG-------------HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH-----  374 (685)
Q Consensus       315 --g~I~i~d~~~~~~~~~~~~-------------h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~-----  374 (685)
                        +.|++||+.+++.+..+.+             |...|++++|+|++++|++++.||.|++||+.+++.+..+.     
T Consensus       256 ~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  335 (397)
T 1sq9_A          256 SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDD  335 (397)
T ss_dssp             TEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGG
T ss_pred             CCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCc
Confidence              9999999999999999998             99999999999999999999999999999999999999998     


Q ss_pred             -e----------------ccceEEEEEcCCC----------CeEEEEEeCCCeEEEEEcC
Q 005656          375 -V----------------DVSITALSLSPNM----------DVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       375 -~----------------~~~v~~v~~spdg----------~~Lat~~~d~~~I~lW~~~  407 (685)
                       .                ..+|++++|+|+|          ++|++++.|+ .|++|+..
T Consensus       336 ~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg-~i~iw~~~  394 (397)
T 1sq9_A          336 IEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDR-SIRWFREA  394 (397)
T ss_dssp             CSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTT-EEEEEEEE
T ss_pred             ccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCC-cEEEEEcC
Confidence             4                3559999999999          7999999997 99999854

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-37  Score=315.60  Aligned_cols=290  Identities=16%  Similarity=0.178  Sum_probs=247.7

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG   80 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~   80 (685)
                      |+++|++++| |+++ +|++|+.||.|++||+.+++....+. .|...|.+++|+|++++|++++.|+.|++|++.....
T Consensus        17 h~~~v~~~~~-~~~~-~l~s~~~dg~v~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~   93 (313)
T 3odt_A           17 HDQDVRDVVA-VDDS-KVASVSRDGTVRLWSKDDQWLGTVVY-TGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSG   93 (313)
T ss_dssp             CSSCEEEEEE-EETT-EEEEEETTSEEEEEEESSSEEEEEEE-ECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTT
T ss_pred             CCCCcEEEEe-cCCC-EEEEEEcCCcEEEEECCCCEEEEEee-cCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCC
Confidence            8899999999 9998 89999999999999999999888888 8999999999999999999999999999999876532


Q ss_pred             CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656           81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  160 (685)
Q Consensus        81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (685)
                       .+.+..+.+|..+|.++.|  +++++++++.||.|++||  .+.....+.                             
T Consensus        94 -~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~-----------------------------  139 (313)
T 3odt_A           94 -EDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQ-----------------------------  139 (313)
T ss_dssp             -SCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEE-----------------------------
T ss_pred             -CCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecc-----------------------------
Confidence             2445566899999999999  567999999999999999  333322221                             


Q ss_pred             cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEcc-CCCEEEEEecCCcEEEEECCCCccccc
Q 005656          161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQSGISRGS  239 (685)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~~~d~~~~~~~~~  239 (685)
                                                             .+...+.+++++| +++++++++.+|.|++||..  .....
T Consensus       140 ---------------------------------------~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~  178 (313)
T 3odt_A          140 ---------------------------------------AHNASVWDAKVVSFSENKFLTASADKTIKLWQND--KVIKT  178 (313)
T ss_dssp             ---------------------------------------CCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT--EEEEE
T ss_pred             ---------------------------------------cCCCceeEEEEccCCCCEEEEEECCCCEEEEecC--ceEEE
Confidence                                                   5678899999988 99999999999999999933  33333


Q ss_pred             cccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec-CCceeEEEEeecCCEEEEEeCCCeEE
Q 005656          240 YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV-GCSLVKIVYHRVNGLLATVADDLVIR  318 (685)
Q Consensus       240 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~I~  318 (685)
                      +.       ..|...|.+++|+|++. +++++.||.|++||+++++.+..+.. ...+.+++|+|++ .+++++.||.|+
T Consensus       179 ~~-------~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~  249 (313)
T 3odt_A          179 FS-------GIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVR  249 (313)
T ss_dssp             EC-------SSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEE
T ss_pred             Ee-------ccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEE
Confidence            32       14899999999999988 99999999999999999999888874 5889999999999 588999999999


Q ss_pred             EEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccc
Q 005656          319 LFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS  378 (685)
Q Consensus       319 i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~  378 (685)
                      +||+.+++.+..+..|...|++++|+|+++ +++++.||.|++||+.+++.+........
T Consensus       250 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~~~~~  308 (313)
T 3odt_A          250 IWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASEDEIKGE  308 (313)
T ss_dssp             EECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC-------
T ss_pred             EEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehhhhhhh
Confidence            999999999999999999999999999998 66789999999999999887766554433

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.1e-38  Score=340.26  Aligned_cols=293  Identities=16%  Similarity=0.223  Sum_probs=232.1

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEee-cccccCeeEEEEeC-CCcEEEEecCCCcEEEEEecCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR-EAHDNAIISLHFFA-NEPVLMSASADNSIKMWIFDTT   78 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~-~~h~~~V~~l~~sp-~~~~l~s~s~D~~v~iWd~~~~   78 (685)
                      |...|+||+|+|.+..+||+|+.||.|+|||+.++.....+. .+|.+.|++|+|+| ++.+|+|++.||+|++||+...
T Consensus       118 ~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~  197 (435)
T 4e54_B          118 FDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN  197 (435)
T ss_dssp             CSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC
T ss_pred             CCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC
Confidence            567899999999654499999999999999998775443332 38999999999998 6889999999999999998754


Q ss_pred             CCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeee
Q 005656           79 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD  158 (685)
Q Consensus        79 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (685)
                      .  .+.+.....+...+.+++|+|++++|++|+.||.|++||+.... ...                             
T Consensus       198 ~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~-~~~-----------------------------  245 (435)
T 4e54_B          198 I--LRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE-LWN-----------------------------  245 (435)
T ss_dssp             E--EEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB-CCC-----------------------------
T ss_pred             c--eeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce-eEE-----------------------------
Confidence            1  12222233445678899999999999999999999999985321 111                             


Q ss_pred             cccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCC-EEEEEecCCcEEEEECCCCccc
Q 005656          159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN-FAVLGTAGGWIERFNLQSGISR  237 (685)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~dg~i~~~d~~~~~~~  237 (685)
                                                             ...|...|.+++|+|++. ++++|+.||.|++||++++...
T Consensus       246 ---------------------------------------~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~  286 (435)
T 4e54_B          246 ---------------------------------------LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGK  286 (435)
T ss_dssp             ---------------------------------------SBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSS
T ss_pred             ---------------------------------------EecccceEEeeeecCCCceEEEEecCcceeeEEeccccccc
Confidence                                                   116788899999999886 7788999999999999987765


Q ss_pred             cccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-------CceeEEEEeecCCEEEE
Q 005656          238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-------CSLVKIVYHRVNGLLAT  310 (685)
Q Consensus       238 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-------~~i~~~~~~~~~~~l~~  310 (685)
                      ..+.     ...+|...|++++|+|++.+|++++.||.|++||+.++.....+..+       ..+....|+|++.++++
T Consensus       287 ~~~~-----~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (435)
T 4e54_B          287 ASFL-----YSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVV  361 (435)
T ss_dssp             SCCS-----BCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEE
T ss_pred             ceEE-----EeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEE
Confidence            5442     22379999999999999999999999999999999988766555332       23445677887777776


Q ss_pred             Ee------------CCCeEEEEEcCCCeeEEEEe-cCCCCeEEE-EEcCCCCEEEEEeCCCcEEEEEcCCCcee
Q 005656          311 VA------------DDLVIRLFDVVALRMVRKFE-GHTDRITDF-CFSEDGKWLLSSGMDGSLRIWDVILARQI  370 (685)
Q Consensus       311 ~~------------~dg~I~i~d~~~~~~~~~~~-~h~~~I~~l-~~spdg~~l~s~s~Dg~I~iwd~~~~~~i  370 (685)
                      ++            .++.|++||..+++.+..+. +|...|.++ +|+|+|++|++|+ |+.|+||++.+++..
T Consensus       362 ~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r  434 (435)
T 4e54_B          362 GRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR  434 (435)
T ss_dssp             ECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred             EEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence            64            23579999999999988875 688889887 6999999999876 789999999988653

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.4e-38  Score=329.11  Aligned_cols=295  Identities=16%  Similarity=0.212  Sum_probs=245.9

Q ss_pred             CCCcEEEEEEccC---CCCEEEEEeCCCcEEEEeCCCCeeeEEeec----ccccCeeEEEEeCC----CcEEEEecCCCc
Q 005656            1 MRGAVTALAFSSD---GQPLLASGASSGVISIWNLEKRRLQSVIRE----AHDNAIISLHFFAN----EPVLMSASADNS   69 (685)
Q Consensus         1 h~~~V~~l~fspd---g~~~latg~~dg~I~vwd~~~~~~~~~~~~----~h~~~V~~l~~sp~----~~~l~s~s~D~~   69 (685)
                      |+++|++++|+|+   +..++++++.++.|++||+.+++.+..+..    .|...|++++|+|+    +++|++++.||.
T Consensus        17 h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~   96 (366)
T 3k26_A           17 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGI   96 (366)
T ss_dssp             TCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCE
T ss_pred             CCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCE
Confidence            7899999999985   544677777788999999998877666651    25678999999999    679999999999


Q ss_pred             EEEEEecCCCCCCceeEecccCCCCCeEEEEec-CCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccc
Q 005656           70 IKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEE  148 (685)
Q Consensus        70 v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (685)
                      |++||+.++    +.+..+.+|..+|.+++|+| ++++|++++.||.|++||+.+++....+..                
T Consensus        97 i~v~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----------------  156 (366)
T 3k26_A           97 IRIINPITM----QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG----------------  156 (366)
T ss_dssp             EEEECTTTC----CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECS----------------
T ss_pred             EEEEEchhc----eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecc----------------
Confidence            999998876    67777889999999999999 899999999999999999987765544420                


Q ss_pred             cccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEE
Q 005656          149 LKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIER  228 (685)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~  228 (685)
                                                                       ...+...|.+++|+|+++++++|+.||.|++
T Consensus       157 -------------------------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  187 (366)
T 3k26_A          157 -------------------------------------------------VEGHRDEVLSADYDLLGEKIMSCGMDHSLKL  187 (366)
T ss_dssp             -------------------------------------------------TTSCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             -------------------------------------------------cccccCceeEEEECCCCCEEEEecCCCCEEE
Confidence                                                             1157788999999999999999999999999


Q ss_pred             EECCCCcccccccc--------------------ccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCce--
Q 005656          229 FNLQSGISRGSYLD--------------------MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDL--  286 (685)
Q Consensus       229 ~d~~~~~~~~~~~~--------------------~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~--  286 (685)
                      ||+.++.....+..                    ........|...|.+++|+  ++++++++.||.|++||+.++..  
T Consensus       188 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~  265 (366)
T 3k26_A          188 WRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDI  265 (366)
T ss_dssp             EESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCG
T ss_pred             EECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccc
Confidence            99998766544321                    0001112499999999998  77999999999999999987643  


Q ss_pred             ------------EEEeec-CCceeEEEEeec--CCEEEEEeCCCeEEEEEcCCCe----eEEEEecC--CCCeEEEEEcC
Q 005656          287 ------------KSRWEV-GCSLVKIVYHRV--NGLLATVADDLVIRLFDVVALR----MVRKFEGH--TDRITDFCFSE  345 (685)
Q Consensus       287 ------------~~~~~~-~~~i~~~~~~~~--~~~l~~~~~dg~I~i~d~~~~~----~~~~~~~h--~~~I~~l~~sp  345 (685)
                                  +..+.. ...+.+++|+|+  +++|++|+.||.|++||+.+++    ....+.+|  ...|++++|+|
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  345 (366)
T 3k26_A          266 DKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSR  345 (366)
T ss_dssp             GGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECT
T ss_pred             cccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCC
Confidence                        444443 478999999999  9999999999999999999875    45578887  78999999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCC
Q 005656          346 DGKWLLSSGMDGSLRIWDVIL  366 (685)
Q Consensus       346 dg~~l~s~s~Dg~I~iwd~~~  366 (685)
                      ++++|++++.||.|++||+.+
T Consensus       346 ~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          346 DSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             TSSEEEEEETTSEEEEEEC--
T ss_pred             CCCeEEEEeCCCEEEEEEecC
Confidence            999999999999999999853

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=8.2e-38  Score=330.19  Aligned_cols=331  Identities=16%  Similarity=0.237  Sum_probs=240.8

Q ss_pred             CCCcEEEEEEcc-CCCCEEEEEeCCCcEEEEeCCCCeeeEEee------------cccccCeeEEEEeC-CCcEEEEecC
Q 005656            1 MRGAVTALAFSS-DGQPLLASGASSGVISIWNLEKRRLQSVIR------------EAHDNAIISLHFFA-NEPVLMSASA   66 (685)
Q Consensus         1 h~~~V~~l~fsp-dg~~~latg~~dg~I~vwd~~~~~~~~~~~------------~~h~~~V~~l~~sp-~~~~l~s~s~   66 (685)
                      |+++|++++|+| +|+ +||+|+.||.|++||+.++.....+.            .+|...|.+++|+| ++.+|++++.
T Consensus        42 h~~~v~~~~~s~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  120 (408)
T 4a11_B           42 HGGGINTLDIEPVEGR-YMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF  120 (408)
T ss_dssp             CSSCEEEEEECTTTCC-EEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEET
T ss_pred             cCCcEEEEEEecCCCC-EEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeC
Confidence            889999999999 998 99999999999999999876654443            25999999999999 7789999999


Q ss_pred             CCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecC---CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcc
Q 005656           67 DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN---GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLK  143 (685)
Q Consensus        67 D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  143 (685)
                      ||.|++||+..+    +....+ .+...+.++.|+|.   +.++++++.||.|++||+.+++....+.            
T Consensus       121 d~~i~iwd~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~------------  183 (408)
T 4a11_B          121 DKTLKVWDTNTL----QTADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ------------  183 (408)
T ss_dssp             TSEEEEEETTTT----EEEEEE-ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC------------
T ss_pred             CCeEEEeeCCCC----ccceec-cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec------------
Confidence            999999999876    455444 37888999999985   4599999999999999998776554442            


Q ss_pred             ccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCC-EEEEEec
Q 005656          144 MKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN-FAVLGTA  222 (685)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~  222 (685)
                                                                              .+...|.+++|+|+++ .+++|+.
T Consensus       184 --------------------------------------------------------~~~~~v~~~~~~~~~~~ll~~~~~  207 (408)
T 4a11_B          184 --------------------------------------------------------GHRQEILAVSWSPRYDYILATASA  207 (408)
T ss_dssp             --------------------------------------------------------CCCSCEEEEEECSSCTTEEEEEET
T ss_pred             --------------------------------------------------------CCCCcEEEEEECCCCCcEEEEEcC
Confidence                                                                    5678899999999998 5899999


Q ss_pred             CCcEEEEECCCCcccc-ccc-------cccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-
Q 005656          223 GGWIERFNLQSGISRG-SYL-------DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-  293 (685)
Q Consensus       223 dg~i~~~d~~~~~~~~-~~~-------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-  293 (685)
                      +|.|++||++++.... .+.       .........|...|.+++|+|+++++++++.||.|++||+.+++........ 
T Consensus       208 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  287 (408)
T 4a11_B          208 DSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKV  287 (408)
T ss_dssp             TSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCC
T ss_pred             CCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccc
Confidence            9999999998765221 110       0011122479999999999999999999999999999999988765443221 


Q ss_pred             -----CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 005656          294 -----CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR  368 (685)
Q Consensus       294 -----~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~  368 (685)
                           ..+........+..+++++.++.|++||+.+++.+..+.+|.+.|++++|+|++++|++++.||.|++||+.+++
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~  367 (408)
T 4a11_B          288 CNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYE  367 (408)
T ss_dssp             CCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred             cccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence                 222222333445577777889999999999999999999999999999999999999999999999999999998


Q ss_pred             eeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          369 QIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       369 ~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                      .+.........  ..+.|......+.+.+++.+++|+++
T Consensus       368 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~W~~~  404 (408)
T 4a11_B          368 PVPDDDETTTK--SQLNPAFEDAWSSSDEEGGTSAWSHP  404 (408)
T ss_dssp             ---------------------------------------
T ss_pred             ccCCCCceEec--cccccccceeecccCccCceeecCCc
Confidence            87665443332  23344333333333344599999865

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=3.2e-38  Score=330.81  Aligned_cols=296  Identities=14%  Similarity=0.180  Sum_probs=245.8

Q ss_pred             EeCCCCeeeEEeecccccCeeEEEEeCCC-cEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEec-CCCEE
Q 005656           30 WNLEKRRLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHI  107 (685)
Q Consensus        30 wd~~~~~~~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l  107 (685)
                      |++...+....+. +|.+.|++++|+|++ ++|++|+.||.|++|++.....  .......+|...|.+++|+| ++++|
T Consensus        58 ~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~l  134 (383)
T 3ei3_B           58 RSLKSYKLHRTAS-PFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNK--TSFIQGMGPGDAITGMKFNQFNTNQL  134 (383)
T ss_dssp             HHHTTCEEEEEEC-CCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTC--EEEECCCSTTCBEEEEEEETTEEEEE
T ss_pred             ccccccceEEecc-CCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccc--ceeeecCCcCCceeEEEeCCCCCCEE
Confidence            3445566777777 999999999999999 8999999999999999986531  22223347999999999999 68999


Q ss_pred             EEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCc
Q 005656          108 LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN  187 (685)
Q Consensus       108 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  187 (685)
                      ++++.||.|++||+... ....+.                                                        
T Consensus       135 ~s~~~d~~i~iwd~~~~-~~~~~~--------------------------------------------------------  157 (383)
T 3ei3_B          135 FVSSIRGATTLRDFSGS-VIQVFA--------------------------------------------------------  157 (383)
T ss_dssp             EEEETTTEEEEEETTSC-EEEEEE--------------------------------------------------------
T ss_pred             EEEeCCCEEEEEECCCC-ceEEEe--------------------------------------------------------
Confidence            99999999999999742 222221                                                        


Q ss_pred             cccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCC-E
Q 005656          188 FVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT-L  266 (685)
Q Consensus       188 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~  266 (685)
                               ....+...+.+++|+|+++++++|+.||.|++||+. +.....+.        +|...|.+++|+|+++ +
T Consensus       158 ---------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~--------~h~~~v~~~~~~~~~~~~  219 (383)
T 3ei3_B          158 ---------KTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEK--------LHKAKVTHAEFNPRCDWL  219 (383)
T ss_dssp             ---------CCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEEE--------CSSSCEEEEEECSSCTTE
T ss_pred             ---------ccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEec--------cCCCcEEEEEECCCCCCE
Confidence                     111445789999999999999999999999999994 54444443        8999999999999998 9


Q ss_pred             EEEEECCCeEEEEECCC----CceEEEeecCCceeEEEEee-cCCEEEEEeCCCeEEEEEcCCCeeEEEEecCC------
Q 005656          267 MISAGYHGDIKVWDFKG----RDLKSRWEVGCSLVKIVYHR-VNGLLATVADDLVIRLFDVVALRMVRKFEGHT------  335 (685)
Q Consensus       267 l~s~s~dg~i~iwd~~~----~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~------  335 (685)
                      +++++.|+.|++||+.+    +.+...+.+...+.+++|+| ++.+|++++.|+.|++||+.+++.+..+.+|.      
T Consensus       220 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  299 (383)
T 3ei3_B          220 MATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQH  299 (383)
T ss_dssp             EEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTT
T ss_pred             EEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccccc
Confidence            99999999999999997    67777788889999999999 99999999999999999999988777777553      


Q ss_pred             -----------CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeec--cc-eEEEEEcCCCCeEEEEEeCCCeE
Q 005656          336 -----------DRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVD--VS-ITALSLSPNMDVLATAHVDQNGV  401 (685)
Q Consensus       336 -----------~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~--~~-v~~v~~spdg~~Lat~~~d~~~I  401 (685)
                                 +.+..++|+|+|++  +++.||.|++||+.+++++..+..+  .. +.+++|+|+|++|++++ |+ .|
T Consensus       300 ~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~-~i  375 (383)
T 3ei3_B          300 LTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GF-NI  375 (383)
T ss_dssp             SCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TT-EE
T ss_pred             ccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CC-cE
Confidence                       23445666777766  7779999999999999999998753  33 77789999999999997 76 99


Q ss_pred             EEEEcC
Q 005656          402 YLWVNR  407 (685)
Q Consensus       402 ~lW~~~  407 (685)
                      ++|+..
T Consensus       376 ~iw~~~  381 (383)
T 3ei3_B          376 LIWNRE  381 (383)
T ss_dssp             EEEECC
T ss_pred             EEEecC
Confidence            999865

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.6e-37  Score=351.43  Aligned_cols=294  Identities=21%  Similarity=0.312  Sum_probs=250.3

Q ss_pred             eeEEeecccccCeeEEEEeCCC-cEEEEecCCCcEEEEEecCCCCC-CceeEecccCCCCCeEEEEecCCCEEEEEeCCC
Q 005656           37 LQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGD-PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR  114 (685)
Q Consensus        37 ~~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg  114 (685)
                      ....+. +|.+.|++++|+|++ ++|+||+.|++|++|++...... ......+.+|...|.+++|+|++++|++|+.||
T Consensus       374 ~~~~l~-~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg  452 (694)
T 3dm0_A          374 LKGTMR-AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG  452 (694)
T ss_dssp             EEEEEE-CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             hhhhcc-cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence            345566 999999999999875 69999999999999999765332 234566789999999999999999999999999


Q ss_pred             ceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCcee
Q 005656          115 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI  194 (685)
Q Consensus       115 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  194 (685)
                      +|++||+.++.....+.                                                               
T Consensus       453 ~v~vwd~~~~~~~~~~~---------------------------------------------------------------  469 (694)
T 3dm0_A          453 ELRLWDLAAGVSTRRFV---------------------------------------------------------------  469 (694)
T ss_dssp             EEEEEETTTTEEEEEEE---------------------------------------------------------------
T ss_pred             cEEEEECCCCcceeEEe---------------------------------------------------------------
Confidence            99999998776555442                                                               


Q ss_pred             ecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCC--CEEEEEEC
Q 005656          195 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN--TLMISAGY  272 (685)
Q Consensus       195 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--~~l~s~s~  272 (685)
                           .|...|.+++|+|+++++++|+.||.|++||+..........     ...+|...|.+++|+|++  ..+++++.
T Consensus       470 -----~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~-----~~~~h~~~v~~~~~~~~~~~~~l~s~s~  539 (694)
T 3dm0_A          470 -----GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISE-----GGEGHRDWVSCVRFSPNTLQPTIVSASW  539 (694)
T ss_dssp             -----CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS-----STTSCSSCEEEEEECSCSSSCEEEEEET
T ss_pred             -----CCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeecc-----CCCCCCCcEEEEEEeCCCCcceEEEEeC
Confidence                 678899999999999999999999999999986553322211     123799999999999986  58999999


Q ss_pred             CCeEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEE
Q 005656          273 HGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLL  351 (685)
Q Consensus       273 dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~  351 (685)
                      ||+|++||+.++++...+..+ ..|.+++|+|++++|++|+.||.|++||+.+++.+..+.. ...|.+++|+|++.+|+
T Consensus       540 d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~  618 (694)
T 3dm0_A          540 DKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLC  618 (694)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEEECSSSSEEE
T ss_pred             CCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEEEcCCCcEEE
Confidence            999999999999888877654 7899999999999999999999999999999999888764 56799999999999888


Q ss_pred             EEeCCCcEEEEEcCCCceeeEEeecc--------------------ceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          352 SSGMDGSLRIWDVILARQIDAIHVDV--------------------SITALSLSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       352 s~s~Dg~I~iwd~~~~~~i~~~~~~~--------------------~v~~v~~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                      +++ |+.|++||+.++..+..+..+.                    .+++++|||+|++|++++.|+ .|++|+..
T Consensus       619 ~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg-~i~iW~i~  692 (694)
T 3dm0_A          619 AAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDG-VIRVWGIG  692 (694)
T ss_dssp             EEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTS-EEEEEEC-
T ss_pred             EEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCC-eEEEEecc
Confidence            776 5569999999998887764321                    278999999999999999997 99999864

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-37  Score=329.10  Aligned_cols=280  Identities=15%  Similarity=0.286  Sum_probs=250.6

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG   80 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~   80 (685)
                      |.+.|++++|+|+|+ +|++|+.||.|++|| .+++.+..+. +|...|.+++|+|++++|++++.|+.|++|++..+  
T Consensus       107 ~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~~-~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--  181 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGN-SIVTGVENGELRLWN-KTGALLNVLN-FHRAPIVSVKWNKDGTHIISMDVENVTILWNVISG--  181 (425)
T ss_dssp             -CBCEEEEEECTTSS-EEEEEETTSCEEEEE-TTSCEEEEEC-CCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTT--
T ss_pred             CCCceEEEEEcCCCC-EEEEEeCCCeEEEEe-CCCCeeeecc-CCCccEEEEEECCCCCEEEEEecCCeEEEEECCCC--
Confidence            467999999999998 999999999999999 6777788887 89999999999999999999999999999999876  


Q ss_pred             CCceeEecccCCCC---------------CeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccc
Q 005656           81 DPRLLRFRSGHSAP---------------PLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK  145 (685)
Q Consensus        81 ~~~~~~~~~~h~~~---------------v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  145 (685)
                        +.+..+..|...               +.++.|+|++ .+++++.||.|++||+.+++....+.              
T Consensus       182 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~--------------  244 (425)
T 1r5m_A          182 --TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLI--------------  244 (425)
T ss_dssp             --EEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEEC--------------
T ss_pred             --cEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeec--------------
Confidence              666666677766               9999999986 58899999999999998765544432              


Q ss_pred             ccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCc
Q 005656          146 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGW  225 (685)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~  225 (685)
                                                                            .+...+.+++|+|+++++++++.+|.
T Consensus       245 ------------------------------------------------------~~~~~i~~~~~~~~~~~l~~~~~d~~  270 (425)
T 1r5m_A          245 ------------------------------------------------------GHHGPISVLEFNDTNKLLLSASDDGT  270 (425)
T ss_dssp             ------------------------------------------------------CCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred             ------------------------------------------------------cCCCceEEEEECCCCCEEEEEcCCCE
Confidence                                                                  56778999999999999999999999


Q ss_pred             EEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec-CCceeEEEEeec
Q 005656          226 IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV-GCSLVKIVYHRV  304 (685)
Q Consensus       226 i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~i~~~~~~~~  304 (685)
                      |++||+.++.....+.        .|...|.+++|+|++ ++++++.||.|++||+.+++.+..+.. ...+.+++|+|+
T Consensus       271 i~i~d~~~~~~~~~~~--------~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~  341 (425)
T 1r5m_A          271 LRIWHGGNGNSQNCFY--------GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQD  341 (425)
T ss_dssp             EEEECSSSBSCSEEEC--------CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTT
T ss_pred             EEEEECCCCccceEec--------CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCC
Confidence            9999999987776654        799999999999999 999999999999999999998888775 479999999999


Q ss_pred             CCEEEEEeCCCeEEEEEcCCCe--------------------eEEEEecCCC--CeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005656          305 NGLLATVADDLVIRLFDVVALR--------------------MVRKFEGHTD--RITDFCFSEDGKWLLSSGMDGSLRIW  362 (685)
Q Consensus       305 ~~~l~~~~~dg~I~i~d~~~~~--------------------~~~~~~~h~~--~I~~l~~spdg~~l~s~s~Dg~I~iw  362 (685)
                      +++|++++.||.|++||+.+++                    .+..+.+|..  .|++++|+|++++|++++.||.|++|
T Consensus       342 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  421 (425)
T 1r5m_A          342 GQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVV  421 (425)
T ss_dssp             SSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEE
T ss_pred             CCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEE
Confidence            9999999999999999999888                    8999999977  99999999999999999999999999


Q ss_pred             EcC
Q 005656          363 DVI  365 (685)
Q Consensus       363 d~~  365 (685)
                      +++
T Consensus       422 ~~~  424 (425)
T 1r5m_A          422 AIP  424 (425)
T ss_dssp             ECC
T ss_pred             eec
Confidence            985

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.3e-38  Score=336.97  Aligned_cols=323  Identities=15%  Similarity=0.160  Sum_probs=259.0

Q ss_pred             EEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeC-CCcEEEEecCCCcEEEEEecC---CCCCCce
Q 005656            9 AFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVLMSASADNSIKMWIFDT---TDGDPRL   84 (685)
Q Consensus         9 ~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~D~~v~iWd~~~---~~~~~~~   84 (685)
                      .|+|+++ .+++++      .|+ .+++.+..+..+|.+.|++++|+| ++++|++|+.||+|++||+..   +. ..+.
T Consensus        34 ~f~~~~~-~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~-~~~~  104 (437)
T 3gre_A           34 EFGPIQE-IVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE-VYSS  104 (437)
T ss_dssp             GGCCCCC-CCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC-CCSC
T ss_pred             hcCCccc-cccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc-ccce
Confidence            3678887 666554      488 556778888449999999999999 999999999999999999876   32 1122


Q ss_pred             eEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEee---cCceeeEechhhHHHHHhhccccccccccCceeeeeccc
Q 005656           85 LRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI---QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE  161 (685)
Q Consensus        85 ~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (685)
                      .... +|..+|.+++|+|++++|++++.||+|++||+.   .++........                            
T Consensus       105 ~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~----------------------------  155 (437)
T 3gre_A          105 SLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE----------------------------  155 (437)
T ss_dssp             SEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE----------------------------
T ss_pred             eeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccc----------------------------
Confidence            2222 599999999999999999999999999999995   44333222100                            


Q ss_pred             ccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEE--EccCCCEEEEEecCCcEEEEECCCCccccc
Q 005656          162 IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACT--ISACGNFAVLGTAGGWIERFNLQSGISRGS  239 (685)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~--~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~  239 (685)
                                       .+....+..           ..+...+.++.  ++++++++++|+.||.|++||++++.....
T Consensus       156 -----------------~i~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  207 (437)
T 3gre_A          156 -----------------CIRKINLKN-----------FGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQI  207 (437)
T ss_dssp             -----------------EEEEEEGGG-----------GSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             -----------------eeEEEEccC-----------cccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEE
Confidence                             001111000           01455677777  678999999999999999999999988777


Q ss_pred             cccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEee--cCCceeEEEEee----cCCEEEEEeC
Q 005656          240 YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE--VGCSLVKIVYHR----VNGLLATVAD  313 (685)
Q Consensus       240 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~----~~~~l~~~~~  313 (685)
                      +..      ..|.+.|++++|+|++.+|++|+.||.|++||+++++.+..+.  +..+|.+++++|    ++.+|++|+.
T Consensus       208 ~~~------~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~  281 (437)
T 3gre_A          208 IEN------SPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSS  281 (437)
T ss_dssp             EEC------CGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEEST
T ss_pred             Ecc------CCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcC
Confidence            641      1288999999999999999999999999999999999988774  457899996664    5779999999


Q ss_pred             CCeEEEEEcCCCeeEEEEecC--------------------------CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005656          314 DLVIRLFDVVALRMVRKFEGH--------------------------TDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA  367 (685)
Q Consensus       314 dg~I~i~d~~~~~~~~~~~~h--------------------------~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~  367 (685)
                      ||.|++||+.+++.+..+.+|                          ...|++++|+ ++++|++|+.||.|++||+.++
T Consensus       282 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~  360 (437)
T 3gre_A          282 KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNEL  360 (437)
T ss_dssp             TEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCG
T ss_pred             CCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCc
Confidence            999999999999999888755                          3457888998 7789999999999999999999


Q ss_pred             ceeeEEee--------------------------------------ccceEEEEEcCC--CCeEEEEEeCCCeEEEEE
Q 005656          368 RQIDAIHV--------------------------------------DVSITALSLSPN--MDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       368 ~~i~~~~~--------------------------------------~~~v~~v~~spd--g~~Lat~~~d~~~I~lW~  405 (685)
                      +.+..+..                                      ...|++++|+++  +.+|++++.|| .|+||+
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG-~I~iw~  437 (437)
T 3gre_A          361 SSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSG-LIGIFQ  437 (437)
T ss_dssp             GGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTS-CEEEEC
T ss_pred             ccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCc-eEEEeC
Confidence            88777653                                      445999999998  78999999987 999994

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=3.9e-37  Score=326.63  Aligned_cols=290  Identities=16%  Similarity=0.240  Sum_probs=246.0

Q ss_pred             EEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEee-cccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCc
Q 005656            5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR-EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPR   83 (685)
Q Consensus         5 V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~   83 (685)
                      ++.|+||+++  +||+|. |++|+|||..++++...+. .+|...|++++|+|+|++|++|+.||+|++||+.++    +
T Consensus       108 ~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~----~  180 (420)
T 4gga_A          108 LNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ----K  180 (420)
T ss_dssp             CBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT----E
T ss_pred             ceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC----c
Confidence            4679999863  788876 8999999999999887765 367889999999999999999999999999999877    7


Q ss_pred             eeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccccc
Q 005656           84 LLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIR  163 (685)
Q Consensus        84 ~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (685)
                      .+....+|...+.++.++  +..|++|+.|+.+++||..........                                 
T Consensus       181 ~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~---------------------------------  225 (420)
T 4gga_A          181 RLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVAT---------------------------------  225 (420)
T ss_dssp             EEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEE---------------------------------
T ss_pred             EEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEE---------------------------------
Confidence            888889999999988775  669999999999999998654322111                                 


Q ss_pred             ccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccc
Q 005656          164 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDM  243 (685)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~  243 (685)
                                                        ...+...+..+.++|+|+++++++.||.+++|+..++.......  
T Consensus       226 ----------------------------------~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~--  269 (420)
T 4gga_A          226 ----------------------------------LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL--  269 (420)
T ss_dssp             ----------------------------------EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCS--
T ss_pred             ----------------------------------ecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceee--
Confidence                                              01677889999999999999999999999999998876533221  


Q ss_pred             cccccCCCCcCEEEEEEcCCCC-EEEEE--ECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEe--CCCeEE
Q 005656          244 SERSNYAHNGEVVGVACDSTNT-LMISA--GYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVA--DDLVIR  318 (685)
Q Consensus       244 ~~~~~~~h~~~v~~l~~~~~~~-~l~s~--s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~I~  318 (685)
                        .....|...|.+++|+|.+. .++++  +.|++|++||+.+++....+..+..+.++.|+|+++.+++++  .|+.|+
T Consensus       270 --~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~  347 (420)
T 4gga_A          270 --QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLV  347 (420)
T ss_dssp             --EEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEE
T ss_pred             --eeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEE
Confidence              12237899999999999764 55544  479999999999999999999999999999999999888765  689999


Q ss_pred             EEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEe
Q 005656          319 LFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH  374 (685)
Q Consensus       319 i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~  374 (685)
                      |||+.+++++.++.+|.+.|++++|+|||++|+||+.||+|+|||+....+.....
T Consensus       348 iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~  403 (420)
T 4gga_A          348 IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRRE  403 (420)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC----
T ss_pred             EEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhh
Confidence            99999999999999999999999999999999999999999999998766555443

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=5.9e-38  Score=325.74  Aligned_cols=285  Identities=14%  Similarity=0.191  Sum_probs=225.5

Q ss_pred             CcEEEEEEccCCCCEEEEEeCCC-------cEEEEeCCCCee----------eEEeecccccCeeEEEEeCCCcEEEEe-
Q 005656            3 GAVTALAFSSDGQPLLASGASSG-------VISIWNLEKRRL----------QSVIREAHDNAIISLHFFANEPVLMSA-   64 (685)
Q Consensus         3 ~~V~~l~fspdg~~~latg~~dg-------~I~vwd~~~~~~----------~~~~~~~h~~~V~~l~~sp~~~~l~s~-   64 (685)
                      -||+|++|+|||+ +||+|+.+.       .|++|++..+..          ...+. +|...|.+++++  ++.+++| 
T Consensus        15 ~PV~sv~fs~dg~-~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~-~~~~~v~s~~~~--~~~~~~g~   90 (365)
T 4h5i_A           15 YPAYGAKFLNNDT-LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALE-DNDDSPTAIDAS--KGIILVGC   90 (365)
T ss_dssp             SCEEEEEEEETTE-EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECC-TTSCCCCEEEEE--TTEEEEEC
T ss_pred             CCEEEEEEeCCCc-EEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEcc-CCCCceEEEEeC--CCEEEEEE
Confidence            3899999999999 999987533       599999876432          12333 788899988876  4455554 


Q ss_pred             ----------cCCCcEEEEEecCCCCCCceeEec-----ccCCCCCeEEEEecCCCEEEEEe--CCCceEEEEeecCcee
Q 005656           65 ----------SADNSIKMWIFDTTDGDPRLLRFR-----SGHSAPPLCIRFYANGRHILSAG--QDRAFRLFSVIQDQQS  127 (685)
Q Consensus        65 ----------s~D~~v~iWd~~~~~~~~~~~~~~-----~~h~~~v~~i~~~~~~~~l~s~s--~dg~i~vwd~~~~~~~  127 (685)
                                +.|+++++|+++............     ..+...+.+++|+|||+++++++  .|++|++||+.+++..
T Consensus        91 ~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~  170 (365)
T 4h5i_A           91 NENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEK  170 (365)
T ss_dssp             CCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEE
T ss_pred             CCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEE
Confidence                      457889999998765433333222     23445688999999999987554  6899999999887765


Q ss_pred             eEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEE
Q 005656          128 RELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKA  207 (685)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~  207 (685)
                      ..+                                                                     .+...|.+
T Consensus       171 ~~~---------------------------------------------------------------------~~~~~V~~  181 (365)
T 4h5i_A          171 FEI---------------------------------------------------------------------ETRGEVKD  181 (365)
T ss_dssp             EEE---------------------------------------------------------------------ECSSCCCE
T ss_pred             EEe---------------------------------------------------------------------CCCCceEE
Confidence            544                                                                     34567999


Q ss_pred             EEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCC----eEEEEECCC
Q 005656          208 CTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG----DIKVWDFKG  283 (685)
Q Consensus       208 ~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg----~i~iwd~~~  283 (685)
                      ++|+|+|+++++++.+ .+.+|+..++......      ....|...|.+++|+|+++++++++.|+    .++.|++..
T Consensus       182 v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~------~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~  254 (365)
T 4h5i_A          182 LHFSTDGKVVAYITGS-SLEVISTVTGSCIARK------TDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKS  254 (365)
T ss_dssp             EEECTTSSEEEEECSS-CEEEEETTTCCEEEEE------CCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEET
T ss_pred             EEEccCCceEEeccce-eEEEEEeccCcceeee------ecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccc
Confidence            9999999999999855 5777777777654332      1237889999999999999999999887    688899876


Q ss_pred             CceE----EEee-cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEE-ecCCCCeEEEEEcCCCCEEEEEeCCC
Q 005656          284 RDLK----SRWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKF-EGHTDRITDFCFSEDGKWLLSSGMDG  357 (685)
Q Consensus       284 ~~~~----~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~-~~h~~~I~~l~~spdg~~l~s~s~Dg  357 (685)
                      ....    ..+. +..+|++++|+|+|++||+|+.|++|+|||+.+++++..+ .+|...|++++|||||++|||||.|+
T Consensus       255 ~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~  334 (365)
T 4h5i_A          255 GNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAAN  334 (365)
T ss_dssp             TEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTS
T ss_pred             ceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCC
Confidence            6432    2222 3478999999999999999999999999999999999886 78999999999999999999999999


Q ss_pred             cEEEEEcCCC
Q 005656          358 SLRIWDVILA  367 (685)
Q Consensus       358 ~I~iwd~~~~  367 (685)
                      +|+|||++..
T Consensus       335 tvrvw~ip~~  344 (365)
T 4h5i_A          335 TIHIIKLPLN  344 (365)
T ss_dssp             EEEEEECCTT
T ss_pred             eEEEEEcCCC
Confidence            9999999754

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.3e-37  Score=326.38  Aligned_cols=284  Identities=15%  Similarity=0.256  Sum_probs=242.4

Q ss_pred             EEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCce
Q 005656            5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRL   84 (685)
Q Consensus         5 V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~   84 (685)
                      +.+++|++  . .+++++.||.|++||+.+++....+...|...|.+++|+|++++|++|+.||.|++||+..+    +.
T Consensus        96 ~~~~~~s~--~-~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~----~~  168 (401)
T 4aez_A           96 LNLLDWSN--L-NVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ----TK  168 (401)
T ss_dssp             CBCEEECT--T-SEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC----CE
T ss_pred             EEEEeecC--C-CEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC----eE
Confidence            44567775  3 46677889999999999999988888569999999999999999999999999999999876    67


Q ss_pred             eEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCc-eeeEechhhHHHHHhhccccccccccCceeeeeccccc
Q 005656           85 LRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ-QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIR  163 (685)
Q Consensus        85 ~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (685)
                      +..+.+|...|.+++|+  ++++++++.||.|++||+.... ....+.                                
T Consensus       169 ~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------------------------------  214 (401)
T 4aez_A          169 LRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQ--------------------------------  214 (401)
T ss_dssp             EEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEE--------------------------------
T ss_pred             EEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEc--------------------------------
Confidence            77888999999999994  5699999999999999997432 222221                                


Q ss_pred             ccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccc
Q 005656          164 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDM  243 (685)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~  243 (685)
                                                          .+...|.+++|+|+++++++|+.||.|++||+.++.....+.  
T Consensus       215 ------------------------------------~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~--  256 (401)
T 4aez_A          215 ------------------------------------GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKT--  256 (401)
T ss_dssp             ------------------------------------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEEC--
T ss_pred             ------------------------------------CCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEec--
Confidence                                                677899999999999999999999999999999987776654  


Q ss_pred             cccccCCCCcCEEEEEEcCCCC-EEEEEE--CCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEE--eCCCeEE
Q 005656          244 SERSNYAHNGEVVGVACDSTNT-LMISAG--YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV--ADDLVIR  318 (685)
Q Consensus       244 ~~~~~~~h~~~v~~l~~~~~~~-~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~dg~I~  318 (685)
                            .|...|.+++|+|++. ++++++  .||.|++||+.+++....+.++..+.+++|+|++++++++  +.||.|+
T Consensus       257 ------~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~  330 (401)
T 4aez_A          257 ------NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLS  330 (401)
T ss_dssp             ------CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEE
T ss_pred             ------CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEE
Confidence                  7999999999999764 556654  6999999999999999999999999999999999999995  4899999


Q ss_pred             EEEcCCCeeEE--EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEE
Q 005656          319 LFDVVALRMVR--KFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI  373 (685)
Q Consensus       319 i~d~~~~~~~~--~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~  373 (685)
                      +||+.+++...  .+.+|...|++++|+|+|++|++++.||.|++|++.+++.+...
T Consensus       331 v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~  387 (401)
T 4aez_A          331 IWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP  387 (401)
T ss_dssp             EEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred             EEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence            99999975544  46799999999999999999999999999999999998877654

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.2e-39  Score=346.77  Aligned_cols=324  Identities=12%  Similarity=0.069  Sum_probs=240.1

Q ss_pred             CCCcEEEEEEccCC---------CCEEEE-------------------EeCCCcEEEEeCCCCeee----EEeecccccC
Q 005656            1 MRGAVTALAFSSDG---------QPLLAS-------------------GASSGVISIWNLEKRRLQ----SVIREAHDNA   48 (685)
Q Consensus         1 h~~~V~~l~fspdg---------~~~lat-------------------g~~dg~I~vwd~~~~~~~----~~~~~~h~~~   48 (685)
                      +.++|.+|+|+|++         + +||+                   |+.||+|+|||+.+++..    ..+. +|.+.
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~-~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~-~~~~~  209 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQ-YLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIV-HSFGE  209 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEE-EEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEE-ECCCS
T ss_pred             CCCceeEEEecccCCCCccCcCCe-EEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEE-ecCCc
Confidence            35788889998886         4 6666                   457789999999877642    3344 67899


Q ss_pred             eeEEEEeCC------CcEEEEecCCCcEEEEEecCCCCC-------CceeEecccCCCCCeEEEEecCCCEEEEEeCCCc
Q 005656           49 IISLHFFAN------EPVLMSASADNSIKMWIFDTTDGD-------PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA  115 (685)
Q Consensus        49 V~~l~~sp~------~~~l~s~s~D~~v~iWd~~~~~~~-------~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~  115 (685)
                      |.+++|+|+      +.+||+++.||+|++||+..+...       ......+.+|..+|++++|++++ .|++|+.||+
T Consensus       210 V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~Dgt  288 (524)
T 2j04_B          210 VWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGF  288 (524)
T ss_dssp             EEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSE
T ss_pred             EEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCE
Confidence            999999997      579999999999999999765321       12234567899999999999864 8999999999


Q ss_pred             eEEEEeecCceee-EechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCcee
Q 005656          116 FRLFSVIQDQQSR-ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI  194 (685)
Q Consensus       116 i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  194 (685)
                      |++||+.++.... .+.                                                               
T Consensus       289 V~lWD~~~~~~~~~~~~---------------------------------------------------------------  305 (524)
T 2j04_B          289 VAEFDLTDPEVPSFYDQ---------------------------------------------------------------  305 (524)
T ss_dssp             EEEEETTBCSSCSEEEE---------------------------------------------------------------
T ss_pred             EEEEECCCCCCceEEee---------------------------------------------------------------
Confidence            9999997653211 111                                                               


Q ss_pred             ecCCCCCCCCeEEE--EEccCC-CEEEEEecCCcEEEEECCCCccccccccccccccCCCC--cCEEEEEEcCCCCEEEE
Q 005656          195 LRPCPENPTAVKAC--TISACG-NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHN--GEVVGVACDSTNTLMIS  269 (685)
Q Consensus       195 ~~~~~~~~~~v~~~--~~s~~g-~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~~~~~~~l~s  269 (685)
                           .|...|.++  +++++| +++++|+.||+|++||++++.....+.        +|.  ..|.+++|+|+++.+++
T Consensus       306 -----~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~--------~~~~~~~v~~v~fsp~~~~l~s  372 (524)
T 2j04_B          306 -----VHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTV--------SRFRGSNLVPVVYCPQIYSYIY  372 (524)
T ss_dssp             -----CSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEE--------EECSCCSCCCEEEETTTTEEEE
T ss_pred             -----cccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccc--------cccccCcccceEeCCCcCeEEE
Confidence                 677889999  578888 899999999999999999877665543        443  35889999999999999


Q ss_pred             EECCCeEEEEECCCCceEEEee-cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEec-----CCCCeEEEEE
Q 005656          270 AGYHGDIKVWDFKGRDLKSRWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG-----HTDRITDFCF  343 (685)
Q Consensus       270 ~s~dg~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~-----h~~~I~~l~~  343 (685)
                      ++.|++|++||++++.....+. +...|.+++|+|++++|++|+.|++|++||+..+ .+..+..     +...|..++|
T Consensus       373 ~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~  451 (524)
T 2j04_B          373 SDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDY  451 (524)
T ss_dssp             ECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBC
T ss_pred             eCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEecc
Confidence            9999999999999988765554 5589999999999999999999999999998754 2221111     1225789999


Q ss_pred             cCCCCEEEEEeCCCcEEEEEcC-CCceeeEEeec-cceEEEEEcCCCC---eEEEEEeCCCeEEEEEcCC
Q 005656          344 SEDGKWLLSSGMDGSLRIWDVI-LARQIDAIHVD-VSITALSLSPNMD---VLATAHVDQNGVYLWVNRC  408 (685)
Q Consensus       344 spdg~~l~s~s~Dg~I~iwd~~-~~~~i~~~~~~-~~v~~v~~spdg~---~Lat~~~d~~~I~lW~~~~  408 (685)
                      +|+|+.+. ...  .+++|+.. ++.++..+..+ ..|.+|+|+|++.   +||+|+.+| .|+||..+.
T Consensus       452 sp~g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g-~vrlw~l~~  517 (524)
T 2j04_B          452 SIKDDKYR-IDS--SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAG-LLTLEYLSL  517 (524)
T ss_dssp             CSSSCEEE-ECC--CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTS-EEEEEECSC
T ss_pred             CCCCCeEE-ccC--CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCc-eEEEEEccc
Confidence            99998552 322  34444433 46666666655 4599999999965   899998887 999998654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=3.3e-37  Score=319.39  Aligned_cols=299  Identities=14%  Similarity=0.232  Sum_probs=241.1

Q ss_pred             CCeeeEEeecccccCeeEEEEeCCCc-EEEEecC---CCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecC---CCE
Q 005656           34 KRRLQSVIREAHDNAIISLHFFANEP-VLMSASA---DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN---GRH  106 (685)
Q Consensus        34 ~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~---D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~---~~~  106 (685)
                      ..+.+..+..+|.+.|.+++|+|+++ ++++++.   |+.|++|++..+.   .......+|..+|.+++|+|+   +++
T Consensus         6 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~   82 (357)
T 3i2n_A            6 KPQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGD---LKLLREIEKAKPIKCGTFGATSLQQRY   82 (357)
T ss_dssp             CCCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSS---EEEEEEEEESSCEEEEECTTCCTTTCC
T ss_pred             hhHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCc---ccceeeecccCcEEEEEEcCCCCCCce
Confidence            33444444448999999999999996 4556665   9999999998763   112223479999999999998   699


Q ss_pred             EEEEeCCCceEEEEeecCc-eeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEc
Q 005656          107 ILSAGQDRAFRLFSVIQDQ-QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRL  185 (685)
Q Consensus       107 l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~  185 (685)
                      |++++.||.|++||+.+++ ....+.                                                      
T Consensus        83 l~~~~~dg~i~iwd~~~~~~~~~~~~------------------------------------------------------  108 (357)
T 3i2n_A           83 LATGDFGGNLHIWNLEAPEMPVYSVK------------------------------------------------------  108 (357)
T ss_dssp             EEEEETTSCEEEECTTSCSSCSEEEC------------------------------------------------------
T ss_pred             EEEecCCCeEEEEeCCCCCccEEEEE------------------------------------------------------
Confidence            9999999999999998765 333321                                                      


Q ss_pred             CccccCceeecCCCCCCCCeEEEE------EccCCCEEEEEecCCcEEEEECCCCc-cccccccccccccCCCCcCEEEE
Q 005656          186 QNFVLGEHILRPCPENPTAVKACT------ISACGNFAVLGTAGGWIERFNLQSGI-SRGSYLDMSERSNYAHNGEVVGV  258 (685)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~v~~~~------~s~~g~~l~~g~~dg~i~~~d~~~~~-~~~~~~~~~~~~~~~h~~~v~~l  258 (685)
                                    .+...|.+++      |+|+++++++|+.||.|++||+.++. ....+..    ....+...+.++
T Consensus       109 --------------~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~----~~~~~~~~v~~~  170 (357)
T 3i2n_A          109 --------------GHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEP----VQGENKRDCWTV  170 (357)
T ss_dssp             --------------CCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECC----CTTSCCCCEEEE
T ss_pred             --------------ecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccc----cCCCCCCceEEE
Confidence                          5677888884      57899999999999999999999886 4444321    000123488999


Q ss_pred             E----EcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEee---cCCEEEEEeCCCeEEEEEcCCCeeEEEE
Q 005656          259 A----CDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHR---VNGLLATVADDLVIRLFDVVALRMVRKF  331 (685)
Q Consensus       259 ~----~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~I~i~d~~~~~~~~~~  331 (685)
                      +    |+|+++++++++.||.|++||+++++......+...+.+++|+|   ++.++++++.||.|++||+.+++.+..+
T Consensus       171 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  250 (357)
T 3i2n_A          171 AFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGF  250 (357)
T ss_dssp             EEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEE
T ss_pred             EEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccce
Confidence            8    78899999999999999999999999888888889999999999   8999999999999999999987665544


Q ss_pred             e-----cCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCC-------------------ceeeEEeecc-ceEEEEEc
Q 005656          332 E-----GHTDRITDFCFSEDGK-WLLSSGMDGSLRIWDVILA-------------------RQIDAIHVDV-SITALSLS  385 (685)
Q Consensus       332 ~-----~h~~~I~~l~~spdg~-~l~s~s~Dg~I~iwd~~~~-------------------~~i~~~~~~~-~v~~v~~s  385 (685)
                      .     +|...|++++|+|+++ +|++++.||.|++||+.++                   +.+..+..+. +|++++|+
T Consensus       251 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s  330 (357)
T 3i2n_A          251 ASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWS  330 (357)
T ss_dssp             EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEEC
T ss_pred             eeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEc
Confidence            4     8999999999999998 8999999999999999864                   3455555444 59999999


Q ss_pred             CCCCeEE-EEEeCCCeEEEEEcCC
Q 005656          386 PNMDVLA-TAHVDQNGVYLWVNRC  408 (685)
Q Consensus       386 pdg~~La-t~~~d~~~I~lW~~~~  408 (685)
                      |+|++|+ +++.|+ .|++|+...
T Consensus       331 ~~~~~l~~s~~~d~-~i~iw~~~~  353 (357)
T 3i2n_A          331 PDKRGLCVCSSFDQ-TVRVLIVTK  353 (357)
T ss_dssp             SSSTTEEEEEETTS-EEEEEEECC
T ss_pred             CCCCeEEEEecCCC-cEEEEECCC
Confidence            9999999 688776 999998653

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-36  Score=307.05  Aligned_cols=285  Identities=16%  Similarity=0.224  Sum_probs=244.6

Q ss_pred             CeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCC
Q 005656           35 RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR  114 (685)
Q Consensus        35 ~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg  114 (685)
                      .+....+. +|.+.|++++| |++++|++++.||.|++||+...    .....+..|...|.+++|+|++++|++++.||
T Consensus         8 ~~~~~~l~-~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg   81 (313)
T 3odt_A            8 YQLSATLK-GHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQ----WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDT   81 (313)
T ss_dssp             CEEEEEEC-CCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSS----EEEEEEEECSSCEEEEEEETTTTEEEEEETTS
T ss_pred             HHHHHHhh-CCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCC----EEEEEeecCCccEEEEEECCCCCEEEEecCCC
Confidence            36677777 99999999999 99999999999999999999776    66777788999999999999999999999999


Q ss_pred             ceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCcee
Q 005656          115 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI  194 (685)
Q Consensus       115 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  194 (685)
                      .|++|++.........                                                                
T Consensus        82 ~i~~~~~~~~~~~~~~----------------------------------------------------------------   97 (313)
T 3odt_A           82 MINGVPLFATSGEDPL----------------------------------------------------------------   97 (313)
T ss_dssp             CEEEEETTCCTTSCC-----------------------------------------------------------------
T ss_pred             eEEEEEeeecCCCCcc----------------------------------------------------------------
Confidence            9999998654321111                                                                


Q ss_pred             ecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcC-CCCEEEEEECC
Q 005656          195 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYH  273 (685)
Q Consensus       195 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~d  273 (685)
                       .....+...+.++++  +++++++|+.+|.|++||  .+.....+.        .|...+.++++.| ++.++++++.|
T Consensus        98 -~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~--------~~~~~v~~~~~~~~~~~~l~~~~~d  164 (313)
T 3odt_A           98 -YTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQ--------AHNASVWDAKVVSFSENKFLTASAD  164 (313)
T ss_dssp             -CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEE--------CCSSCEEEEEEEETTTTEEEEEETT
T ss_pred             -cchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecc--------cCCCceeEEEEccCCCCEEEEEECC
Confidence             011156788999999  688999999999999999  444444433        7999999999988 88999999999


Q ss_pred             CeEEEEECCCCceEEEee--cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEE
Q 005656          274 GDIKVWDFKGRDLKSRWE--VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLL  351 (685)
Q Consensus       274 g~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~  351 (685)
                      |.|++||.  .+....+.  +...+.+++|+|++. +++++.|+.|++||+.+++.+..+.+|.+.|++++|+|++ .|+
T Consensus       165 ~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~  240 (313)
T 3odt_A          165 KTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIV  240 (313)
T ss_dssp             SCEEEEET--TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEE
T ss_pred             CCEEEEec--CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEE
Confidence            99999993  44444444  568999999999998 9999999999999999999999999999999999999999 588


Q ss_pred             EEeCCCcEEEEEcCCCceeeEEeecc-ceEEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656          352 SSGMDGSLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWVNRC  408 (685)
Q Consensus       352 s~s~Dg~I~iwd~~~~~~i~~~~~~~-~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~  408 (685)
                      +++.||.|++||+.+++.+..+..+. +|++++|+|+++ +++++.|+ .|++|+.+.
T Consensus       241 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg-~i~iw~~~~  296 (313)
T 3odt_A          241 SCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDN-LVRIFSQEK  296 (313)
T ss_dssp             EEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTS-CEEEEESCG
T ss_pred             EEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCC-cEEEEeCCC
Confidence            99999999999999999999998776 599999999998 55677786 999998643

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=7.4e-37  Score=309.39  Aligned_cols=248  Identities=14%  Similarity=0.311  Sum_probs=216.7

Q ss_pred             eeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCce
Q 005656           37 LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAF  116 (685)
Q Consensus        37 ~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i  116 (685)
                      ...++. +|.+.|++++|+|++++|++++.||+|++||+.++    ..+..+.+|..+|.+++|+|++++|++|+.|++|
T Consensus         5 ~~~~~~-~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i   79 (304)
T 2ynn_A            5 IKKTFS-NRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ----VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRI   79 (304)
T ss_dssp             CEEEEE-EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT----EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred             eEEeec-CCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC----ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEE
Confidence            455676 99999999999999999999999999999999876    6778888999999999999999999999999999


Q ss_pred             EEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeec
Q 005656          117 RLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR  196 (685)
Q Consensus       117 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  196 (685)
                      ++||+.+++....+                                                                  
T Consensus        80 ~vwd~~~~~~~~~~------------------------------------------------------------------   93 (304)
T 2ynn_A           80 RVFNYNTGEKVVDF------------------------------------------------------------------   93 (304)
T ss_dssp             EEEETTTCCEEEEE------------------------------------------------------------------
T ss_pred             EEEECCCCcEEEEE------------------------------------------------------------------
Confidence            99998655432222                                                                  


Q ss_pred             CCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeE
Q 005656          197 PCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDI  276 (685)
Q Consensus       197 ~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i  276 (685)
                                                                          .+|...|.+++|+|++.++++|+.||+|
T Consensus        94 ----------------------------------------------------~~h~~~v~~~~~~~~~~~l~sgs~D~~v  121 (304)
T 2ynn_A           94 ----------------------------------------------------EAHPDYIRSIAVHPTKPYVLSGSDDLTV  121 (304)
T ss_dssp             ----------------------------------------------------ECCSSCEEEEEECSSSSEEEEEETTSCE
T ss_pred             ----------------------------------------------------eCCCCcEEEEEEcCCCCEEEEECCCCeE
Confidence                                                                1788999999999999999999999999


Q ss_pred             EEEECCCC-ceEEEee-cCCceeEEEEee-cCCEEEEEeCCCeEEEEEcCCCeeEEEEe-cCCCCeEEEEEcC--CCCEE
Q 005656          277 KVWDFKGR-DLKSRWE-VGCSLVKIVYHR-VNGLLATVADDLVIRLFDVVALRMVRKFE-GHTDRITDFCFSE--DGKWL  350 (685)
Q Consensus       277 ~iwd~~~~-~~~~~~~-~~~~i~~~~~~~-~~~~l~~~~~dg~I~i~d~~~~~~~~~~~-~h~~~I~~l~~sp--dg~~l  350 (685)
                      ++||+.++ .+...+. +...|.+++|+| ++.+|++|+.|++|++||+.++.....+. +|...|..++|+|  ++++|
T Consensus       122 ~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  201 (304)
T 2ynn_A          122 KLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYM  201 (304)
T ss_dssp             EEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEE
T ss_pred             EEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEE
Confidence            99999877 4444554 447899999999 57899999999999999998877665554 5668899999987  77899


Q ss_pred             EEEeCCCcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656          351 LSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNRC  408 (685)
Q Consensus       351 ~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~~~~  408 (685)
                      ++|+.|++|++||+.+++++..+..|.. |.+++|+|++.+|++++.|+ .|++|+.+.
T Consensus       202 ~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg-~i~iWd~~~  259 (304)
T 2ynn_A          202 ITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG-TLKIWNSST  259 (304)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTS-CEEEEETTT
T ss_pred             EEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCC-eEEEEECCC
Confidence            9999999999999999999999987655 99999999999999999997 999999653

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.1e-37  Score=321.95  Aligned_cols=290  Identities=14%  Similarity=0.236  Sum_probs=244.8

Q ss_pred             eEEeecccccCeeEEEEeCC----CcEEEEecCCCcEEEEEecCCCCCCceeEecc-----cCCCCCeEEEEecC----C
Q 005656           38 QSVIREAHDNAIISLHFFAN----EPVLMSASADNSIKMWIFDTTDGDPRLLRFRS-----GHSAPPLCIRFYAN----G  104 (685)
Q Consensus        38 ~~~~~~~h~~~V~~l~~sp~----~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~-----~h~~~v~~i~~~~~----~  104 (685)
                      ...+..+|.++|++++|+|+    ...+++++.++.|++|++..+.    .+..+.     .|...|.+++|+|+    +
T Consensus        10 ~~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   85 (366)
T 3k26_A           10 VNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQG----EIRLLQSYVDADADENFYTCAWTYDSNTSH   85 (366)
T ss_dssp             EEEEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGG----CEEEEEEEECSCTTCCEEEEEEEECTTTCC
T ss_pred             EEEeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCc----EEEeeeeccccCCCCcEEEEEeccCCCCCC
Confidence            33455589999999999984    4567777777899999998663    332222     36788999999999    6


Q ss_pred             CEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEE
Q 005656          105 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR  184 (685)
Q Consensus       105 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~  184 (685)
                      ++|++++.||.|++||+.+++....+.                                                     
T Consensus        86 ~~l~~~~~dg~i~v~d~~~~~~~~~~~-----------------------------------------------------  112 (366)
T 3k26_A           86 PLLAVAGSRGIIRIINPITMQCIKHYV-----------------------------------------------------  112 (366)
T ss_dssp             EEEEEEETTCEEEEECTTTCCEEEEEE-----------------------------------------------------
T ss_pred             CEEEEecCCCEEEEEEchhceEeeeec-----------------------------------------------------
Confidence            799999999999999998776555442                                                     


Q ss_pred             cCccccCceeecCCCCCCCCeEEEEEcc-CCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCC
Q 005656          185 LQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST  263 (685)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  263 (685)
                                     .+...|.+++|+| +++++++|+.||.|++||+.++.....+.     ....|...|.+++|+|+
T Consensus       113 ---------------~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~  172 (366)
T 3k26_A          113 ---------------GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFG-----GVEGHRDEVLSADYDLL  172 (366)
T ss_dssp             ---------------SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEEC-----STTSCSSCEEEEEECTT
T ss_pred             ---------------CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEec-----ccccccCceeEEEECCC
Confidence                           5778999999999 99999999999999999999988776652     11279999999999999


Q ss_pred             CCEEEEEECCCeEEEEECCCCceEEEee-----------------------------cCCceeEEEEeecCCEEEEEeCC
Q 005656          264 NTLMISAGYHGDIKVWDFKGRDLKSRWE-----------------------------VGCSLVKIVYHRVNGLLATVADD  314 (685)
Q Consensus       264 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~-----------------------------~~~~i~~~~~~~~~~~l~~~~~d  314 (685)
                      +.++++++.||.|++||+.+++....+.                             +...|.+++|+  ++++++++.|
T Consensus       173 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d  250 (366)
T 3k26_A          173 GEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCE  250 (366)
T ss_dssp             SSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSS
T ss_pred             CCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecC
Confidence            9999999999999999999876543332                             55889999998  7899999999


Q ss_pred             CeEEEEEcCCCe--------------eEEEEecCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCcee----eEEe
Q 005656          315 LVIRLFDVVALR--------------MVRKFEGHTDRITDFCFSED--GKWLLSSGMDGSLRIWDVILARQI----DAIH  374 (685)
Q Consensus       315 g~I~i~d~~~~~--------------~~~~~~~h~~~I~~l~~spd--g~~l~s~s~Dg~I~iwd~~~~~~i----~~~~  374 (685)
                      +.|++||+.+++              .+..+.+|...|++++|+|+  +++|++|+.||.|++||+.+++..    ..+.
T Consensus       251 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  330 (366)
T 3k26_A          251 NAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLT  330 (366)
T ss_dssp             SEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEEC
T ss_pred             CEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEc
Confidence            999999998764              48889999999999999999  999999999999999999988644    3565


Q ss_pred             ec---cceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          375 VD---VSITALSLSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       375 ~~---~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                      .+   ..|++++|+|++++|++++.|+ .|++|+..
T Consensus       331 ~~~~~~~v~~~~~s~~~~~l~s~~~dg-~i~iwd~~  365 (366)
T 3k26_A          331 HHKCGAAIRQTSFSRDSSILIAVCDDA-SIWRWDRL  365 (366)
T ss_dssp             CTTCCSCEEEEEECTTSSEEEEEETTS-EEEEEEC-
T ss_pred             ccccCCceEEEEeCCCCCeEEEEeCCC-EEEEEEec
Confidence            54   5699999999999999999997 99999853

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.6e-38  Score=333.34  Aligned_cols=296  Identities=13%  Similarity=0.182  Sum_probs=247.8

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCC----CeeeEEeecccccCeeEEEEeCC-CcEEEEecCCCcEEEEEe
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEK----RRLQSVIREAHDNAIISLHFFAN-EPVLMSASADNSIKMWIF   75 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~----~~~~~~~~~~h~~~V~~l~~sp~-~~~l~s~s~D~~v~iWd~   75 (685)
                      |.+.|++++|+|+|+ +|++|+.||.|++||+.+    .+....+. +|.+.|.+++|+|+ +.+|++++.|+.|++||+
T Consensus        66 ~~~~v~~~~~s~~~~-~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~  143 (416)
T 2pm9_A           66 VDSKFNDLDWSHNNK-IIAGALDNGSLELYSTNEANNAINSMARFS-NHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM  143 (416)
T ss_dssp             CSSCEEEEEECSSSS-CEEEEESSSCEEEECCSSTTSCCCEEEECC-CSSSCCCEEEECSSSTTBEEEECSSSCEEBCBT
T ss_pred             cCCceEEEEECCCCC-eEEEEccCCeEEEeecccccccccchhhcc-CCccceEEEEEcCCCCCEEEEEcCCCeEEEEEC
Confidence            678999999999999 999999999999999988    45777776 89999999999998 889999999999999999


Q ss_pred             cCCCC-----CCceeEecccCCCCCeEEEEecC-CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccccccc
Q 005656           76 DTTDG-----DPRLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEEL  149 (685)
Q Consensus        76 ~~~~~-----~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (685)
                      .....     ....+....+|...|.+++|+|+ +.+|++++.||.|++||+.+++....+....               
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~---------------  208 (416)
T 2pm9_A          144 NKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTS---------------  208 (416)
T ss_dssp             TTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCC---------------
T ss_pred             CCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccc---------------
Confidence            87641     11122344689999999999999 7899999999999999998876655543100               


Q ss_pred             ccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCC-CEEEEEecCC---c
Q 005656          150 KLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGG---W  225 (685)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg---~  225 (685)
                                                                     ....+...+.+++|+|++ .++++++.+|   .
T Consensus       209 -----------------------------------------------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~  241 (416)
T 2pm9_A          209 -----------------------------------------------PNSGIKQQLSVVEWHPKNSTRVATATGSDNDPS  241 (416)
T ss_dssp             -----------------------------------------------CSSCCCCCEEEEEECSSCTTEEEEEECCSSSCC
T ss_pred             -----------------------------------------------cccccCCceEEEEECCCCCCEEEEEECCCCCce
Confidence                                                           001347889999999997 6899999998   9


Q ss_pred             EEEEECCCCc-cccccccccccccCCCCcCEEEEEEcC-CCCEEEEEECCCeEEEEECCCCceEEEeec-CCceeEEEEe
Q 005656          226 IERFNLQSGI-SRGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYHGDIKVWDFKGRDLKSRWEV-GCSLVKIVYH  302 (685)
Q Consensus       226 i~~~d~~~~~-~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~i~~~~~~  302 (685)
                      |++||++++. ....+.       .+|...|.+++|+| ++.+|++++.||.|++||+.+++.+..+.. ...+.+++|+
T Consensus       242 i~~~d~~~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s  314 (416)
T 2pm9_A          242 ILIWDLRNANTPLQTLN-------QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFA  314 (416)
T ss_dssp             CCEEETTSTTSCSBCCC-------SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEEC
T ss_pred             EEEEeCCCCCCCcEEee-------cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEEC
Confidence            9999999863 333221       16899999999999 899999999999999999999998888875 4789999999


Q ss_pred             ecC-CEEEEEeCCCeEEEEEcCCCeeEEEEe-----------------------------------cCCCCeEEEEEcCC
Q 005656          303 RVN-GLLATVADDLVIRLFDVVALRMVRKFE-----------------------------------GHTDRITDFCFSED  346 (685)
Q Consensus       303 ~~~-~~l~~~~~dg~I~i~d~~~~~~~~~~~-----------------------------------~h~~~I~~l~~spd  346 (685)
                      |++ .+|++++.|+.|++||+.++.......                                   .|..++++++|+||
T Consensus       315 ~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d  394 (416)
T 2pm9_A          315 PEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFG  394 (416)
T ss_dssp             TTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETT
T ss_pred             CCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeC
Confidence            999 799999999999999998765322111                                   16678889999999


Q ss_pred             CCEEEEEeCCCcEEEEEcCCC
Q 005656          347 GKWLLSSGMDGSLRIWDVILA  367 (685)
Q Consensus       347 g~~l~s~s~Dg~I~iwd~~~~  367 (685)
                      |++|++++.||.|+||++.+.
T Consensus       395 g~~la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          395 GKLVQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             TEEECBCTTSSCBCCBCCCCC
T ss_pred             CeEEEEeCCCCeEEEEEeccC
Confidence            999999999999999998764

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=3.1e-37  Score=316.83  Aligned_cols=246  Identities=17%  Similarity=0.205  Sum_probs=210.7

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEe---ecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVI---REAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT   77 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~---~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~   77 (685)
                      |.++|++++|+|++  .|++|+.||.|+|||+.+++.....   ..+|.+.|++++|+|++++|++|+.|++|++||+.+
T Consensus        81 ~~~~v~~~~~s~d~--~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~  158 (344)
T 4gqb_B           81 TEAGVADLTWVGER--GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ  158 (344)
T ss_dssp             ESSCEEEEEEETTT--EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             cCCCEEEEEEeCCC--eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence            35679999999996  4789999999999999988754332   238999999999999999999999999999999987


Q ss_pred             CCCCCceeEecccCCCCCeEEEEecCCC-EEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceee
Q 005656           78 TDGDPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA  156 (685)
Q Consensus        78 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (685)
                      +    +++..+.+|...|++++|+|++. .|++++.||+|++||+.+++....+...                       
T Consensus       159 ~----~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-----------------------  211 (344)
T 4gqb_B          159 Q----VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS-----------------------  211 (344)
T ss_dssp             T----EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-------------------------
T ss_pred             C----cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecc-----------------------
Confidence            7    78888999999999999999874 7889999999999999888765544210                       


Q ss_pred             eecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccC-CCEEEEEecCCcEEEEECCCCc
Q 005656          157 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC-GNFAVLGTAGGWIERFNLQSGI  235 (685)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~dg~i~~~d~~~~~  235 (685)
                                                                 .+...+.+++|+|+ ++++++|+.||.|++||+++++
T Consensus       212 -------------------------------------------~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~  248 (344)
T 4gqb_B          212 -------------------------------------------APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS  248 (344)
T ss_dssp             ---------------------------------------------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--
T ss_pred             -------------------------------------------eeeccceeeeecCCCCcceEEeccCCcEEEEECCCCc
Confidence                                                       34556889999985 5788999999999999999998


Q ss_pred             cccccccccccccCCCCcCEEEEEEcCCC-CEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCC-EEEEEeC
Q 005656          236 SRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG-LLATVAD  313 (685)
Q Consensus       236 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~  313 (685)
                      ....+.        +|...|++++|+|++ ++|++|+.||+|++||+.++++.....|...|.+++|+|++. +|++|+.
T Consensus       249 ~~~~~~--------~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~  320 (344)
T 4gqb_B          249 CVLSSA--------VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGW  320 (344)
T ss_dssp             CCEEEE--------CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEET
T ss_pred             EEEEEc--------CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcC
Confidence            887765        899999999999998 579999999999999999998887777779999999999986 6789999


Q ss_pred             CCeEEEEEcCCCe
Q 005656          314 DLVIRLFDVVALR  326 (685)
Q Consensus       314 dg~I~i~d~~~~~  326 (685)
                      |++|++|++.+..
T Consensus       321 D~~v~~w~v~~~~  333 (344)
T 4gqb_B          321 DHQVVHHVVPTEP  333 (344)
T ss_dssp             TSCEEEEECCC--
T ss_pred             CCeEEEEECCCCC
Confidence            9999999998754

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.8e-36  Score=315.89  Aligned_cols=290  Identities=10%  Similarity=0.076  Sum_probs=245.3

Q ss_pred             ccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeec
Q 005656           44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ  123 (685)
Q Consensus        44 ~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~  123 (685)
                      .|.++|++++|+|++++|++++.|+.|++|++..+.  ...+..+.+|...|.+++|+|++++|++++.||.|++||+.+
T Consensus         6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~   83 (372)
T 1k8k_C            6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK--WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG   83 (372)
T ss_dssp             SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE--EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred             ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc--EEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence            689999999999999999999999999999998751  127777889999999999999999999999999999999977


Q ss_pred             CceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCC
Q 005656          124 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT  203 (685)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  203 (685)
                      ++......                                                                  ...+..
T Consensus        84 ~~~~~~~~------------------------------------------------------------------~~~~~~   97 (372)
T 1k8k_C           84 RTWKPTLV------------------------------------------------------------------ILRINR   97 (372)
T ss_dssp             TEEEEEEE------------------------------------------------------------------CCCCSS
T ss_pred             CeeeeeEE------------------------------------------------------------------eecCCC
Confidence            65433221                                                                  015677


Q ss_pred             CeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECC-
Q 005656          204 AVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK-  282 (685)
Q Consensus       204 ~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~-  282 (685)
                      .+.+++|+|+++++++|+.+|.|++||+..+.......    ....+|...|.+++|+|+++++++++.||.|++||+. 
T Consensus        98 ~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~  173 (372)
T 1k8k_C           98 AARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK----HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYI  173 (372)
T ss_dssp             CEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE----EECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCC
T ss_pred             ceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeee----eeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccc
Confidence            89999999999999999999999999998876321111    0123789999999999999999999999999999953 


Q ss_pred             -----------------CCceEEEee-cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEc
Q 005656          283 -----------------GRDLKSRWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFS  344 (685)
Q Consensus       283 -----------------~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~s  344 (685)
                                       .++.+..+. +...+.+++|+|++++|++++.|+.|++||+.+++.+..+.+|...|++++|+
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~  253 (372)
T 1k8k_C          174 KEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFI  253 (372)
T ss_dssp             TTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEE
T ss_pred             ccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEe
Confidence                             567777774 45789999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEEcCC--Cce--e------------------------------------eEE--eeccceEEE
Q 005656          345 EDGKWLLSSGMDGSLRIWDVIL--ARQ--I------------------------------------DAI--HVDVSITAL  382 (685)
Q Consensus       345 pdg~~l~s~s~Dg~I~iwd~~~--~~~--i------------------------------------~~~--~~~~~v~~v  382 (685)
                      |++++|+++ .|+.|++|++.+  +..  +                                    ..+  .+..+|+++
T Consensus       254 ~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  332 (372)
T 1k8k_C          254 TESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQI  332 (372)
T ss_dssp             ETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEE
T ss_pred             cCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCccee
Confidence            999988887 899999999987  421  0                                    112  234459999


Q ss_pred             EEc-CCC---CeEEEEEeCCCeEEEEEcC
Q 005656          383 SLS-PNM---DVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       383 ~~s-pdg---~~Lat~~~d~~~I~lW~~~  407 (685)
                      +|+ ++|   .+|++++.|+ .|++|+.+
T Consensus       333 ~~~~~~g~~~~~l~s~~~Dg-~i~~W~~~  360 (372)
T 1k8k_C          333 SVLSGGKAKCSQFCTTGMDG-GMSIWDVR  360 (372)
T ss_dssp             EEEESTTTSCSEEEEEETTS-EEEEEEHH
T ss_pred             EEecCCCcceeeEEEecCCC-ceEEEEec
Confidence            966 677   9999999997 99999864

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2.6e-37  Score=330.88  Aligned_cols=291  Identities=17%  Similarity=0.343  Sum_probs=234.6

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe-----------eeEEeecccc------------cCeeEEEEeCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-----------LQSVIREAHD------------NAIISLHFFAN   57 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~-----------~~~~~~~~h~------------~~V~~l~~sp~   57 (685)
                      |.+.|++++|+|+|+ +||+|+.||.|+|||+.+++           ....+. +|.            +.|++++|+|+
T Consensus        27 ~~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~V~~l~~~~~  104 (447)
T 3dw8_B           27 EADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQ-SHEPEFDYLKSLEIEEKINKIRWLPQ  104 (447)
T ss_dssp             GGGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEE-CCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred             ccCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCcccccceeEecccc-cccccccccccccccCceEEEEEcCC
Confidence            357899999999999 99999999999999999876           577777 898            88999999999


Q ss_pred             C--cEEEEecCCCcEEEEEecCCCCCC-----------------------------------c-eeEecccCCCCCeEEE
Q 005656           58 E--PVLMSASADNSIKMWIFDTTDGDP-----------------------------------R-LLRFRSGHSAPPLCIR   99 (685)
Q Consensus        58 ~--~~l~s~s~D~~v~iWd~~~~~~~~-----------------------------------~-~~~~~~~h~~~v~~i~   99 (685)
                      +  ..|++++.|++|++|++.......                                   . ......+|...|.+++
T Consensus       105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  184 (447)
T 3dw8_B          105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS  184 (447)
T ss_dssp             CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred             CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence            8  799999999999999987632100                                   0 0122468999999999


Q ss_pred             EecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCce
Q 005656          100 FYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQ  179 (685)
Q Consensus       100 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (685)
                      |+|++++|++| .||.|++||+......                                                    
T Consensus       185 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~----------------------------------------------------  211 (447)
T 3dw8_B          185 INSDYETYLSA-DDLRINLWHLEITDRS----------------------------------------------------  211 (447)
T ss_dssp             ECTTSSEEEEE-CSSEEEEEETTEEEEE----------------------------------------------------
T ss_pred             EcCCCCEEEEe-CCCeEEEEECCCCCce----------------------------------------------------
Confidence            99999999998 7999999998632211                                                    


Q ss_pred             EEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEE
Q 005656          180 AYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVA  259 (685)
Q Consensus       180 ~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  259 (685)
                                                                    +.++++...            ...+|...|.+++
T Consensus       212 ----------------------------------------------~~~~~~~~~------------~~~~~~~~v~~~~  233 (447)
T 3dw8_B          212 ----------------------------------------------FNIVDIKPA------------NMEELTEVITAAE  233 (447)
T ss_dssp             ----------------------------------------------EEEEECCCS------------SGGGCCCCEEEEE
T ss_pred             ----------------------------------------------eeeeecccc------------cccccCcceEEEE
Confidence                                                          111111110            1127888999999


Q ss_pred             EcCCC-CEEEEEECCCeEEEEECCCCce----EEEeecCC-------------ceeEEEEeecCCEEEEEeCCCeEEEEE
Q 005656          260 CDSTN-TLMISAGYHGDIKVWDFKGRDL----KSRWEVGC-------------SLVKIVYHRVNGLLATVADDLVIRLFD  321 (685)
Q Consensus       260 ~~~~~-~~l~s~s~dg~i~iwd~~~~~~----~~~~~~~~-------------~i~~~~~~~~~~~l~~~~~dg~I~i~d  321 (685)
                      |+|++ .++++++.||.|++||+++++.    ...+..+.             .+.+++|+|++++|++++. +.|++||
T Consensus       234 ~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd  312 (447)
T 3dw8_B          234 FHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWD  312 (447)
T ss_dssp             ECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEE
T ss_pred             ECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEe
Confidence            99998 8999999999999999998876    56665543             8999999999999999999 9999999


Q ss_pred             cCC-CeeEEEEecCCCC---------------eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEE------------
Q 005656          322 VVA-LRMVRKFEGHTDR---------------ITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI------------  373 (685)
Q Consensus       322 ~~~-~~~~~~~~~h~~~---------------I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~------------  373 (685)
                      +.+ ++++..+.+|...               +..++|+|++++|++|+.||.|++||+.+++.+...            
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  392 (447)
T 3dw8_B          313 LNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVL  392 (447)
T ss_dssp             TTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBC
T ss_pred             CCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeeccccccccccc
Confidence            997 8888899988642               334999999999999999999999999998876422            


Q ss_pred             ---------------------eeccceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          374 ---------------------HVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       374 ---------------------~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                                           .....|.+++|+|++.+||+++.+  .+++|..+
T Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~--~~~~~~~~  445 (447)
T 3dw8_B          393 KPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTN--NLYIFQDK  445 (447)
T ss_dssp             CCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSS--CEEEEECC
T ss_pred             CCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecc--eeeeeccc
Confidence                                 123458899999999999999876  59999743

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.5e-38  Score=330.82  Aligned_cols=292  Identities=12%  Similarity=0.119  Sum_probs=227.5

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCC--eeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR--RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT   78 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~--~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~   78 (685)
                      |.++|++++|+|+|+ +||+|+.||.|+|||+.++  +....+. +|.+.|.+++|+|++++|++++.|++|++||+..+
T Consensus        10 ~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~   87 (377)
T 3dwl_C           10 LPKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHARTFS-DHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPD   87 (377)
T ss_dssp             CSSCCSCCEECSSSS-EEECCCSSSCBCEEEEETTEEEECCCBC-CCSSCEEEEEECTTTCCEEEEETTSSEEEC-----
T ss_pred             CCCcEEEEEECCCCC-EEEEecCCCEEEEEEccCCceEEEEEEe-cCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Confidence            468899999999999 9999999999999999998  7777887 89999999999999999999999999999999876


Q ss_pred             CCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCce---eeEechhhHHHHHhhccccccccccCcee
Q 005656           79 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ---SRELSQRHVAKRARKLKMKEEELKLKPVI  155 (685)
Q Consensus        79 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (685)
                      . .......+.+|...|.+++|+|++++|++++.|+.|++||+.+++.   ...+.                        
T Consensus        88 ~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------------------------  142 (377)
T 3dwl_C           88 G-TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLK------------------------  142 (377)
T ss_dssp             --CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEEC------------------------
T ss_pred             C-ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEee------------------------
Confidence            3 1235566778999999999999999999999999999999976652   22211                        


Q ss_pred             eeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCc
Q 005656          156 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI  235 (685)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~  235 (685)
                                                                 ..|...|.+++|+|+++++++|+.||.|++||+..+.
T Consensus       143 -------------------------------------------~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  179 (377)
T 3dwl_C          143 -------------------------------------------RPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRD  179 (377)
T ss_dssp             -------------------------------------------SSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSS
T ss_pred             -------------------------------------------cccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecc
Confidence                                                       0267899999999999999999999999999996443


Q ss_pred             cccccc----------cccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCce----EEEeecC-CceeEEE
Q 005656          236 SRGSYL----------DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDL----KSRWEVG-CSLVKIV  300 (685)
Q Consensus       236 ~~~~~~----------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~~-~~i~~~~  300 (685)
                      ......          ....... +|...|.+++|+|++++|++++.||.|++||+.+++.    +..+..+ .++.+++
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~  258 (377)
T 3dwl_C          180 VDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLL  258 (377)
T ss_dssp             CC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEE
T ss_pred             cCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEE
Confidence            211100          0011122 8999999999999999999999999999999998876    5555544 7899999


Q ss_pred             EeecCCEEEEEeCCCeEEEEEcCCCe------------------------------eE------EEEe------------
Q 005656          301 YHRVNGLLATVADDLVIRLFDVVALR------------------------------MV------RKFE------------  332 (685)
Q Consensus       301 ~~~~~~~l~~~~~dg~I~i~d~~~~~------------------------------~~------~~~~------------  332 (685)
                      |+|++++|++|+.++.+ +|+.....                              .+      ..+.            
T Consensus       259 ~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  337 (377)
T 3dwl_C          259 WANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSIS  337 (377)
T ss_dssp             EEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------C
T ss_pred             EcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhcccccccc
Confidence            99999999999877766 66654111                              00      1111            


Q ss_pred             ----cCCCCeEEEEEcCCC-C---EEEEEeCCCcEEEEEc
Q 005656          333 ----GHTDRITDFCFSEDG-K---WLLSSGMDGSLRIWDV  364 (685)
Q Consensus       333 ----~h~~~I~~l~~spdg-~---~l~s~s~Dg~I~iwd~  364 (685)
                          .|.+.|+++++.++. .   .|+|||.||.|++||+
T Consensus       338 ~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          338 SLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             CCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             ccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence                299999999976543 3   6999999999999985

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=4.7e-36  Score=305.41  Aligned_cols=284  Identities=16%  Similarity=0.242  Sum_probs=242.0

Q ss_pred             EEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEee-cccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCc
Q 005656            5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR-EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPR   83 (685)
Q Consensus         5 V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~   83 (685)
                      .++|+||+++  +||+|. |++|+|||+.+++++..+. .+|...|++++|+|++++|++|+.||+|++|++.++    +
T Consensus        28 ~~~l~WS~~~--~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~----~  100 (318)
T 4ggc_A           28 LNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ----K  100 (318)
T ss_dssp             CBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT----E
T ss_pred             ceEEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc----e
Confidence            4679999975  788875 8999999999999888775 367889999999999999999999999999999887    7


Q ss_pred             eeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccccc
Q 005656           84 LLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIR  163 (685)
Q Consensus        84 ~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (685)
                      .+....+|...+.++.+  ++..+++++.++.+++|+..........                                 
T Consensus       101 ~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~---------------------------------  145 (318)
T 4ggc_A          101 RLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVAT---------------------------------  145 (318)
T ss_dssp             EEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEE---------------------------------
T ss_pred             eEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEE---------------------------------
Confidence            78888899988776555  5679999999999999987655332111                                 


Q ss_pred             ccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccc
Q 005656          164 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDM  243 (685)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~  243 (685)
                                                        ...+...+..+.++++++++++++.||.|++||+.+++....... 
T Consensus       146 ----------------------------------~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-  190 (318)
T 4ggc_A          146 ----------------------------------LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ-  190 (318)
T ss_dssp             ----------------------------------EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSE-
T ss_pred             ----------------------------------EcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccccccee-
Confidence                                              016678899999999999999999999999999998765433221 


Q ss_pred             cccccCCCCcCEEEEEEcCCCCEE---EEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEe--CCCeEE
Q 005656          244 SERSNYAHNGEVVGVACDSTNTLM---ISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVA--DDLVIR  318 (685)
Q Consensus       244 ~~~~~~~h~~~v~~l~~~~~~~~l---~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~I~  318 (685)
                         ....|.+.|.++.++|.+..+   ++++.+++|++||...............+..+.|+|++..+++++  .|+.|+
T Consensus       191 ---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~  267 (318)
T 4ggc_A          191 ---TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLV  267 (318)
T ss_dssp             ---EECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEE
T ss_pred             ---eecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEE
Confidence               223788899999999977533   355678999999999999988888889999999999999877655  799999


Q ss_pred             EEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 005656          319 LFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR  368 (685)
Q Consensus       319 i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~  368 (685)
                      +||+.+++++.++.+|.+.|++++|+|||++|+|||.||+|+|||+....
T Consensus       268 iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          268 IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred             EEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence            99999999999999999999999999999999999999999999997653

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.6e-36  Score=350.36  Aligned_cols=319  Identities=17%  Similarity=0.223  Sum_probs=271.9

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG   80 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~   80 (685)
                      |.++|++++|+|+|+ +||+|+.||.|++||+.+++.+..+. +|.+.|++++|+|++++|++++.||+|++|++..+. 
T Consensus        54 ~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~-  130 (814)
T 3mkq_A           54 TETPVRAGKFIARKN-WIIVGSDDFRIRVFNYNTGEKVVDFE-AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW-  130 (814)
T ss_dssp             CSSCEEEEEEEGGGT-EEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS-
T ss_pred             CCCcEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcEEEEEe-cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc-
Confidence            788999999999999 99999999999999999999999998 999999999999999999999999999999998652 


Q ss_pred             CCceeEecccCCCCCeEEEEec-CCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeec
Q 005656           81 DPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC  159 (685)
Q Consensus        81 ~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (685)
                        .....+.+|..+|.+++|+| ++..|++++.||.|++||+.++.....+..                           
T Consensus       131 --~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~---------------------------  181 (814)
T 3mkq_A          131 --ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT---------------------------  181 (814)
T ss_dssp             --EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEEC---------------------------
T ss_pred             --eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEec---------------------------
Confidence              55667788999999999999 789999999999999999876654433321                           


Q ss_pred             ccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEcc--CCCEEEEEecCCcEEEEECCCCccc
Q 005656          160 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA--CGNFAVLGTAGGWIERFNLQSGISR  237 (685)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~g~~dg~i~~~d~~~~~~~  237 (685)
                                                              .+...+.+++|+|  ++.++++|+.+|.|++||+.++...
T Consensus       182 ----------------------------------------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~  221 (814)
T 3mkq_A          182 ----------------------------------------GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV  221 (814)
T ss_dssp             ----------------------------------------CCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEE
T ss_pred             ----------------------------------------CCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEE
Confidence                                                    3347789999999  9999999999999999999998877


Q ss_pred             cccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecCC--EEEEEeCC
Q 005656          238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNG--LLATVADD  314 (685)
Q Consensus       238 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~--~l~~~~~d  314 (685)
                      ..+.        +|...|.+++|+|++.++++++.||.|++||+.+++....+..+ ..+.+++|+|++.  ++++++ +
T Consensus       222 ~~~~--------~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~  292 (814)
T 3mkq_A          222 ATLE--------GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-D  292 (814)
T ss_dssp             EEEE--------CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE-T
T ss_pred             EEEc--------CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe-C
Confidence            6664        79999999999999999999999999999999999988887765 7899999999987  455554 6


Q ss_pred             CeEEEEEcCCCee----------EE---------------------------------EEecCCCCeEEEEEcCCCCEEE
Q 005656          315 LVIRLFDVVALRM----------VR---------------------------------KFEGHTDRITDFCFSEDGKWLL  351 (685)
Q Consensus       315 g~I~i~d~~~~~~----------~~---------------------------------~~~~h~~~I~~l~~spdg~~l~  351 (685)
                      +.+.+|++.....          +.                                 .+..|...+.+++|+|+|++|+
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la  372 (814)
T 3mkq_A          293 NGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVT  372 (814)
T ss_dssp             TEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEE
T ss_pred             CCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEE
Confidence            6788888764322          11                                 1123455689999999999999


Q ss_pred             EEeCCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656          352 SSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       352 s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~  406 (685)
                      +++ ||.+.+|++......    ....+.+++|+|+|+++++++.++ .|++|..
T Consensus       373 ~~~-~~~~~i~~~~~~~~~----~~~~i~~~~~spdg~~la~~~~~g-~v~l~~~  421 (814)
T 3mkq_A          373 VVG-DGEYVIYTALAWRNK----AFGKCQDFVWGPDSNSYALIDETG-QIKYYKN  421 (814)
T ss_dssp             EEE-TTEEEEEETTTTEEE----EEEECSEEEECTTSSCEEEECTTC-CEEEEET
T ss_pred             Eec-CCEEEEEECcccccc----CCCceEEEEEeCCCCeEEEEeCCC-cEEEEEC
Confidence            998 899999998654332    234588999999999999999887 8999963

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=2e-36  Score=314.15  Aligned_cols=296  Identities=13%  Similarity=0.128  Sum_probs=228.3

Q ss_pred             ccCeeEEEEeCCCcEEEEecCC-------CcEEEEEecCCCCCCc------eeEecccCCCCCeEEEEecCCCEEEEEe-
Q 005656           46 DNAIISLHFFANEPVLMSASAD-------NSIKMWIFDTTDGDPR------LLRFRSGHSAPPLCIRFYANGRHILSAG-  111 (685)
Q Consensus        46 ~~~V~~l~~sp~~~~l~s~s~D-------~~v~iWd~~~~~~~~~------~~~~~~~h~~~v~~i~~~~~~~~l~s~s-  111 (685)
                      ..||++++|+||+++|++||.|       +.|++|+++.......      ....+.+|...|.++++.  ++.++++. 
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~   91 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN   91 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence            4589999999999999998754       3599999987643211      112467888899988775  44666654 


Q ss_pred             ----------CCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEE
Q 005656          112 ----------QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY  181 (685)
Q Consensus       112 ----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (685)
                                .|+.+|+|++..........                                                  
T Consensus        92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~--------------------------------------------------  121 (365)
T 4h5i_A           92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFL--------------------------------------------------  121 (365)
T ss_dssp             CCHHHHHHTSCCCCEEEEEEETTTTEEEEE--------------------------------------------------
T ss_pred             CCccEEEEecCCCcEEEEEecCCCceEEEe--------------------------------------------------
Confidence                      46678888776543221110                                                  


Q ss_pred             EEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe--cCCcEEEEECCCCccccccccccccccCCCCcCEEEEE
Q 005656          182 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT--AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVA  259 (685)
Q Consensus       182 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~--~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  259 (685)
                        ..       ............+++++|||||+++++++  .|+.|++||+.++.....+         .|.+.|.+++
T Consensus       122 --~~-------~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~---------~~~~~V~~v~  183 (365)
T 4h5i_A          122 --TS-------VDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI---------ETRGEVKDLH  183 (365)
T ss_dssp             --EE-------ECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE---------ECSSCCCEEE
T ss_pred             --ee-------eceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe---------CCCCceEEEE
Confidence              00       00001113455689999999999987655  6899999999999887665         6778899999


Q ss_pred             EcCCCCEEEEEECCCeEEEEECCCCceEEEe---ecCCceeEEEEeecCCEEEEEeCCC----eEEEEEcCCCee----E
Q 005656          260 CDSTNTLMISAGYHGDIKVWDFKGRDLKSRW---EVGCSLVKIVYHRVNGLLATVADDL----VIRLFDVVALRM----V  328 (685)
Q Consensus       260 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg----~I~i~d~~~~~~----~  328 (685)
                      |+|+|+++++++. +.+.+|+..++......   .+...+.+++|+|+++++++++.|+    .+++|++.....    .
T Consensus       184 fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~  262 (365)
T 4h5i_A          184 FSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRS  262 (365)
T ss_dssp             ECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEE
T ss_pred             EccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceee
Confidence            9999999999885 55667776666654432   2346799999999999999998887    688999877643    4


Q ss_pred             EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEE-eec-cceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656          329 RKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI-HVD-VSITALSLSPNMDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       329 ~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~-~~~-~~v~~v~~spdg~~Lat~~~d~~~I~lW~~  406 (685)
                      ..+.+|...|++++|||||++||+|+.|++|+|||+.+++++..+ ..| .+|++++|||||++||+++.|+ +|+||+.
T Consensus       263 ~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~-tvrvw~i  341 (365)
T 4h5i_A          263 KQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAAN-TIHIIKL  341 (365)
T ss_dssp             EEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTS-EEEEEEC
T ss_pred             eeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCC-eEEEEEc
Confidence            567899999999999999999999999999999999999999886 444 4599999999999999999997 9999998


Q ss_pred             CCCcCCC
Q 005656          407 RCMFSGD  413 (685)
Q Consensus       407 ~~~~~~~  413 (685)
                      +..|...
T Consensus       342 p~~~~~~  348 (365)
T 4h5i_A          342 PLNYANY  348 (365)
T ss_dssp             CTTTTC-
T ss_pred             CCCCcCc
Confidence            7666544

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-37  Score=330.17  Aligned_cols=286  Identities=16%  Similarity=0.240  Sum_probs=236.4

Q ss_pred             CCCcEEEEEEcc-CCCCEEEEEeCCCcEEEEeCCC---CeeeE-EeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEe
Q 005656            1 MRGAVTALAFSS-DGQPLLASGASSGVISIWNLEK---RRLQS-VIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF   75 (685)
Q Consensus         1 h~~~V~~l~fsp-dg~~~latg~~dg~I~vwd~~~---~~~~~-~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~   75 (685)
                      |+++|++++|+| +|+ +||+|+.||.|+|||+.+   +.... .+..+|.+.|++++|+|++++|++++.||+|++||+
T Consensus        62 h~~~V~~~~~s~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~  140 (437)
T 3gre_A           62 EPNSITSSAVSPGETP-YLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKV  140 (437)
T ss_dssp             TTSCEEEEEEECSSSC-EEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEE
T ss_pred             CCCceEEEEECCCCCC-EEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEe
Confidence            789999999999 998 999999999999999876   43221 222269999999999999999999999999999999


Q ss_pred             cCC-CCCCceeEecc----------c--CCCCCeEEE--EecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHh
Q 005656           76 DTT-DGDPRLLRFRS----------G--HSAPPLCIR--FYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRAR  140 (685)
Q Consensus        76 ~~~-~~~~~~~~~~~----------~--h~~~v~~i~--~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  140 (685)
                      +.. .+  +......          .  +...+.++.  +++++.+|++++.||.|++||+.+++....+...       
T Consensus       141 ~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------  211 (437)
T 3gre_A          141 NHYQQE--SEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENS-------  211 (437)
T ss_dssp             EEEEET--TEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECC-------
T ss_pred             ccccCC--ceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccC-------
Confidence            521 01  2222211          1  566777777  5578999999999999999999887766555310       


Q ss_pred             hccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEE
Q 005656          141 KLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG  220 (685)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g  220 (685)
                                                                                 .+...|.+++|+|+++++++|
T Consensus       212 -----------------------------------------------------------~h~~~v~~~~~s~~~~~l~s~  232 (437)
T 3gre_A          212 -----------------------------------------------------------PRHGAVSSICIDEECCVLILG  232 (437)
T ss_dssp             -----------------------------------------------------------GGGCCEEEEEECTTSCEEEEE
T ss_pred             -----------------------------------------------------------CCCCceEEEEECCCCCEEEEE
Confidence                                                                       156789999999999999999


Q ss_pred             ecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcC----CCCEEEEEECCCeEEEEECCCCceEEEee-----
Q 005656          221 TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS----TNTLMISAGYHGDIKVWDFKGRDLKSRWE-----  291 (685)
Q Consensus       221 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-----  291 (685)
                      +.||.|++||++++.....+..       .|...|.+++|+|    ++.++++++.||.|++||+.+++....+.     
T Consensus       233 ~~dg~i~iwd~~~~~~~~~~~~-------~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  305 (437)
T 3gre_A          233 TTRGIIDIWDIRFNVLIRSWSF-------GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQ  305 (437)
T ss_dssp             ETTSCEEEEETTTTEEEEEEBC-------TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSC
T ss_pred             cCCCeEEEEEcCCccEEEEEec-------CCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCC
Confidence            9999999999999887765531       6778999996654    57799999999999999999998777665     


Q ss_pred             ----------------------cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEec----------------
Q 005656          292 ----------------------VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG----------------  333 (685)
Q Consensus       292 ----------------------~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~----------------  333 (685)
                                            +...|.+++|+ ++++|++|+.|+.|++||+.+++....+.+                
T Consensus       306 ~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (437)
T 3gre_A          306 PSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTAN  384 (437)
T ss_dssp             CCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETT
T ss_pred             CccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecc
Confidence                                  33458899999 789999999999999999999887777765                


Q ss_pred             ---------------------CCCCeEEEEEcCC--CCEEEEEeCCCcEEEEE
Q 005656          334 ---------------------HTDRITDFCFSED--GKWLLSSGMDGSLRIWD  363 (685)
Q Consensus       334 ---------------------h~~~I~~l~~spd--g~~l~s~s~Dg~I~iwd  363 (685)
                                           |...|++++|+++  +.+|++|+.||.|+||+
T Consensus       385 ~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          385 LTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             EEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             eEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence                                 8899999999998  77999999999999995

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=5.7e-37  Score=326.88  Aligned_cols=290  Identities=15%  Similarity=0.184  Sum_probs=232.6

Q ss_pred             eEEeecccccCeeEEEEeC-CCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEec-CCCEEEEEeCCCc
Q 005656           38 QSVIREAHDNAIISLHFFA-NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRA  115 (685)
Q Consensus        38 ~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~s~dg~  115 (685)
                      ..... +|...|+||+|+| ++.+||+|+.||+|+|||+..+..  .......+|.++|++++|+| ++++|++|+.||+
T Consensus       112 ~~~~~-~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~--~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~  188 (435)
T 4e54_B          112 LQKAA-PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK--PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGT  188 (435)
T ss_dssp             CCEEE-ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSC--CEEECCCSSSCCCCEEEECSSCTTEEEEECSSSC
T ss_pred             cccCC-CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc--eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCE
Confidence            34444 7899999999999 566999999999999999876532  34455679999999999998 6889999999999


Q ss_pred             eEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceee
Q 005656          116 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL  195 (685)
Q Consensus       116 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  195 (685)
                      |++||+.++.......                                                                
T Consensus       189 v~iwd~~~~~~~~~~~----------------------------------------------------------------  204 (435)
T 4e54_B          189 TRLQDFKGNILRVFAS----------------------------------------------------------------  204 (435)
T ss_dssp             EEEEETTSCEEEEEEC----------------------------------------------------------------
T ss_pred             EEEeeccCCceeEEec----------------------------------------------------------------
Confidence            9999986543221111                                                                


Q ss_pred             cCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCC-EEEEEECCC
Q 005656          196 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT-LMISAGYHG  274 (685)
Q Consensus       196 ~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~dg  274 (685)
                        .......+.+++|+|+++++++|+.+|.|++||+.... ...+        .+|...|.+++|+|++. ++++++.|+
T Consensus       205 --~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~-~~~~--------~~h~~~v~~v~~~p~~~~~~~s~s~d~  273 (435)
T 4e54_B          205 --SDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE-LWNL--------RMHKKKVTHVALNPCCDWFLATASVDQ  273 (435)
T ss_dssp             --CSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB-CCCS--------BCCSSCEEEEEECTTCSSEEEEEETTS
T ss_pred             --cCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce-eEEE--------ecccceEEeeeecCCCceEEEEecCcc
Confidence              01334567889999999999999999999999987543 3333        28999999999999876 788999999


Q ss_pred             eEEEEECCCCceEEE----eecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCC------eEEEEEc
Q 005656          275 DIKVWDFKGRDLKSR----WEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDR------ITDFCFS  344 (685)
Q Consensus       275 ~i~iwd~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~------I~~l~~s  344 (685)
                      +|++||+++.+....    ..+...|.+++|+|++.+|++++.||.|++||+.+++....+.+|...      +....|+
T Consensus       274 ~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (435)
T 4e54_B          274 TVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWH  353 (435)
T ss_dssp             BCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEEC
T ss_pred             eeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEc
Confidence            999999987654332    345588999999999999999999999999999999988888776532      3456788


Q ss_pred             CCCCEEEEEe------------CCCcEEEEEcCCCceeeEEee-c-cceEEE-EEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          345 EDGKWLLSSG------------MDGSLRIWDVILARQIDAIHV-D-VSITAL-SLSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       345 pdg~~l~s~s------------~Dg~I~iwd~~~~~~i~~~~~-~-~~v~~v-~~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                      |++.++++++            .++.|++||..+++.+..+.. + ..|.++ +|+|+|++|++|+ |+ .|+||+.+
T Consensus       354 ~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~-~i~iW~~~  429 (435)
T 4e54_B          354 PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GY-HILIWSQQ  429 (435)
T ss_dssp             SSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SS-EEEECCCC
T ss_pred             CCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CC-cEEEEECC
Confidence            8877777664            235799999999999888753 3 347777 6999999999876 65 89999854

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=4.8e-36  Score=319.87  Aligned_cols=293  Identities=19%  Similarity=0.313  Sum_probs=238.9

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG   80 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~   80 (685)
                      |.++|+|++|  +|+ ++++|+.||.|++||+.+++....+. +|.+.|.+++|  ++++|++|+.||+|++||+.++  
T Consensus       132 ~~~~v~~~~~--d~~-~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~--  203 (435)
T 1p22_A          132 TSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRILT-GHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG--  203 (435)
T ss_dssp             SCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEEEC-CCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC--
T ss_pred             CCCcEEEEEE--CCC-EEEEEeCCCeEEEEeCCCCeEEEEEc-CCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC--
Confidence            4567999888  677 99999999999999999999999998 99999999999  7889999999999999999887  


Q ss_pred             CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656           81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  160 (685)
Q Consensus        81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (685)
                        +.+..+.+|...|.+++|++  ..+++|+.||.|++||+.++.......                             
T Consensus       204 --~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~-----------------------------  250 (435)
T 1p22_A          204 --EMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRR-----------------------------  250 (435)
T ss_dssp             --CEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEE-----------------------------
T ss_pred             --cEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeee-----------------------------
Confidence              67788889999999999974  599999999999999997765432110                             


Q ss_pred             cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656          161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  240 (685)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~  240 (685)
                                                          ....+...|.++++  +++++++|+.||.|++||+.++.....+
T Consensus       251 ------------------------------------~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~  292 (435)
T 1p22_A          251 ------------------------------------VLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTL  292 (435)
T ss_dssp             ------------------------------------EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             ------------------------------------EecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEE
Confidence                                                01166788999988  7899999999999999999999887776


Q ss_pred             ccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEE
Q 005656          241 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRL  319 (685)
Q Consensus       241 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i  319 (685)
                      .        +|...|.++.++  +.++++|+.||.|++||+.+++.+..+..+ ..+.++++  ++.+|++|+.||.|++
T Consensus       293 ~--------~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~v  360 (435)
T 1p22_A          293 N--------GHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKV  360 (435)
T ss_dssp             E--------CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEE
T ss_pred             c--------CCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEE
Confidence            4        899999999995  679999999999999999999998888754 78898888  7899999999999999


Q ss_pred             EEcCCCe---------eEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccceEEEEEcC
Q 005656          320 FDVVALR---------MVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSP  386 (685)
Q Consensus       320 ~d~~~~~---------~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~sp  386 (685)
                      ||+.+++         ++..+.+|.+.|++++|  ++++|++++.||+|++||+.++..........+..++.|.+
T Consensus       361 wd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  434 (435)
T 1p22_A          361 WDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEPPRSPSRTYTYIS  434 (435)
T ss_dssp             EEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-----------------------
T ss_pred             EECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCCCCCCccceeeec
Confidence            9998776         88999999999999999  78899999999999999999887766666566666666654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2.1e-35  Score=313.38  Aligned_cols=304  Identities=17%  Similarity=0.251  Sum_probs=245.6

Q ss_pred             EEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCce
Q 005656            5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRL   84 (685)
Q Consensus         5 V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~   84 (685)
                      +....|+|+|+ +||+|+.||.|++||+.+++....+. +|.+.|++++|+|++++|++++.|++|++||+..+    +.
T Consensus       100 ~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~----~~  173 (420)
T 3vl1_A          100 TAVDTAKLQMR-RFILGTTEGDIKVLDSNFNLQREIDQ-AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG----SN  173 (420)
T ss_dssp             EEEEEECSSSC-EEEEEETTSCEEEECTTSCEEEEETT-SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC----CC
T ss_pred             eEEEEEecCCC-EEEEEECCCCEEEEeCCCcceeeecc-cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCC----cC
Confidence            45557899998 99999999999999999999888876 89999999999999999999999999999999876    55


Q ss_pred             eEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccc
Q 005656           85 LRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE  164 (685)
Q Consensus        85 ~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (685)
                      +..+.+|...|.+++|+|++++|++++.||+|++||+.+++....+.....              ...++..+       
T Consensus       174 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~--------------~~~~v~~~-------  232 (420)
T 3vl1_A          174 PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKEN--------------PHDGVNSI-------  232 (420)
T ss_dssp             CEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTB--------------TTCCEEEE-------
T ss_pred             ceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCC--------------CCCCccEE-------
Confidence            667789999999999999999999999999999999998877766642110              00000000       


Q ss_pred             cCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccccc
Q 005656          165 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMS  244 (685)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~  244 (685)
                                       .|.......      ....+...+.+++|+|+|+++++|+.+|.|++||+.++.....+..  
T Consensus       233 -----------------~~~~~~~~~------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--  287 (420)
T 3vl1_A          233 -----------------ALFVGTDRQ------LHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPS--  287 (420)
T ss_dssp             -----------------EEEECCCSS------CGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECC--
T ss_pred             -----------------EEecCCcce------eeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEccc--
Confidence                             000000000      0013456788899999999999999999999999999887666532  


Q ss_pred             ccccCCCCcCEEEEEEcCCCC-EEEEEECCCeEEEEECCCCce-EEEeec--CCceeEEEEeecCCEEEEEeCCCeEEEE
Q 005656          245 ERSNYAHNGEVVGVACDSTNT-LMISAGYHGDIKVWDFKGRDL-KSRWEV--GCSLVKIVYHRVNGLLATVADDLVIRLF  320 (685)
Q Consensus       245 ~~~~~~h~~~v~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~~~-~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~I~i~  320 (685)
                           .|...|.+++|+|++. ++++++.||.|++||+++++. +..+..  ...+.++ +.+++++|++++.|+.|++|
T Consensus       288 -----~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~~~d~~v~iw  361 (420)
T 3vl1_A          288 -----KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNV-YFAAGALFVSSGFDTSIKLD  361 (420)
T ss_dssp             -----TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEE-EEETTEEEEEETTTEEEEEE
T ss_pred             -----ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEE-EeCCCCEEEEecCCccEEEE
Confidence                 6889999999999998 999999999999999998743 555543  3667666 55688899999999999999


Q ss_pred             EcCCC---------eeEEEEecCCCCeEEEEEcCCCC---EEEEEeCCCcEEEEEcCC
Q 005656          321 DVVAL---------RMVRKFEGHTDRITDFCFSEDGK---WLLSSGMDGSLRIWDVIL  366 (685)
Q Consensus       321 d~~~~---------~~~~~~~~h~~~I~~l~~spdg~---~l~s~s~Dg~I~iwd~~~  366 (685)
                      |+...         .....+.+|.+.|.+++|+|+++   .+++++.+|.+.+|++..
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          362 IISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             EECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred             eccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence            98763         22334667899999999999999   788888899999999864

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.1e-35  Score=306.31  Aligned_cols=311  Identities=15%  Similarity=0.217  Sum_probs=231.0

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCC----eeeEEeecccccCeeEEEEeC--CCcEEEEecCCCcEEEEE
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR----RLQSVIREAHDNAIISLHFFA--NEPVLMSASADNSIKMWI   74 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~----~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~s~D~~v~iWd   74 (685)
                      |+++|++++|+|+|+ +||+|+.||.|++||+.++    +....+. +|...|++++|+|  ++++|++++.||+|++||
T Consensus        10 H~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd   87 (351)
T 3f3f_A           10 HDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWELSDSWR-AHDSSIVAIDWASPEYGRIIASASYDKTVKLWE   87 (351)
T ss_dssp             CSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEEEEEEEE-CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred             cccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCcceecceec-cCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEe
Confidence            889999999999999 9999999999999999876    4666676 8999999999999  689999999999999999


Q ss_pred             ecCCCCCC-----ceeEecccCCCCCeEEEEecC--CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccccc
Q 005656           75 FDTTDGDP-----RLLRFRSGHSAPPLCIRFYAN--GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEE  147 (685)
Q Consensus        75 ~~~~~~~~-----~~~~~~~~h~~~v~~i~~~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (685)
                      +..+....     +.+..+.+|...|.+++|+|+  +.+|++++.||.|++||+.+++....+.....            
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~------------  155 (351)
T 3f3f_A           88 EDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSE------------  155 (351)
T ss_dssp             ECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEE------------
T ss_pred             cCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccc------------
Confidence            98764322     456777899999999999999  99999999999999999987765433211000            


Q ss_pred             ccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccC---CCEEEEEecCC
Q 005656          148 ELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC---GNFAVLGTAGG  224 (685)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~g~~dg  224 (685)
                                                                 ..........+...+.+++|+|+   +.++++++.++
T Consensus       156 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  192 (351)
T 3f3f_A          156 -------------------------------------------MKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQ  192 (351)
T ss_dssp             -------------------------------------------EESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTE
T ss_pred             -------------------------------------------ccccccccCCcccceeEEEeccCCCCCcEEEEecCCC
Confidence                                                       00000011256778999999997   99999999999


Q ss_pred             cEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCC----CEEEEEECCCeEEEEECCCCceEEEeecC-CceeEE
Q 005656          225 WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN----TLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKI  299 (685)
Q Consensus       225 ~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~----~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~  299 (685)
                      .+.+|+...+......      ...+|...|++++|+|++    ++|++++.||.|++||+..+......... ......
T Consensus       193 ~~~~~~~~~~~~~~~~------~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  266 (351)
T 3f3f_A          193 AIIYQRGKDGKLHVAA------KLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMF  266 (351)
T ss_dssp             EEEEEECTTSCEEEEE------ECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------
T ss_pred             cEEEEccCCCceeeee------ecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceecc
Confidence            9988888777642211      223899999999999998    79999999999999999876443332221 223333


Q ss_pred             EEeecCCEEEEE----eCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEe
Q 005656          300 VYHRVNGLLATV----ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH  374 (685)
Q Consensus       300 ~~~~~~~~l~~~----~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~  374 (685)
                      ...+....++.+    .....+.+|+....+.+..+.+|...|++++|+|++++|++++.||.|++|++.+++.+..+.
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~  345 (351)
T 3f3f_A          267 DNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMS  345 (351)
T ss_dssp             ------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred             CCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhee
Confidence            333333333333    334566777777788899999999999999999999999999999999999999887665543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.5e-35  Score=305.09  Aligned_cols=277  Identities=10%  Similarity=0.139  Sum_probs=237.9

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe---eeEEeecccccCeeEEEEeCCCc-EEEEecCCCcEEEEEe-
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR---LQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIF-   75 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~---~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~D~~v~iWd~-   75 (685)
                      |++.|++++|+|+|+ +|++|+.||.|++||+.++.   ....+. +|...|.+++|+|+++ +|++++.||.|++|++ 
T Consensus        10 h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~   87 (342)
T 1yfq_A           10 PKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDLLQSL-RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLI   87 (342)
T ss_dssp             CSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEEEEEEE-ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSS
T ss_pred             CCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCccccceeee-ecCCceEEEEECCCCCcEEEEEcCCCeEEEEEec
Confidence            789999999999998 99999999999999998876   334444 8999999999999999 9999999999999998 


Q ss_pred             cCCCCCCceeEeccc--CCCCCeEEEEecCCCEEEEEeCCCceEEEEeec---------CceeeEechhhHHHHHhhccc
Q 005656           76 DTTDGDPRLLRFRSG--HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ---------DQQSRELSQRHVAKRARKLKM  144 (685)
Q Consensus        76 ~~~~~~~~~~~~~~~--h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~---------~~~~~~~~~~~~~~~~~~~~~  144 (685)
                      ..+    . ...+.+  |...|.+++|+| +++|++++.||.|++||+.+         .+....+              
T Consensus        88 ~~~----~-~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--------------  147 (342)
T 1yfq_A           88 GSP----S-FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT--------------  147 (342)
T ss_dssp             SSS----S-EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS--------------
T ss_pred             cCC----c-eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEE--------------
Confidence            664    2 356678  999999999999 99999999999999999865         2211111              


Q ss_pred             cccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCC
Q 005656          145 KEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG  224 (685)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg  224 (685)
                                                                             .+...+.+++|++++  +++++.+|
T Consensus       148 -------------------------------------------------------~~~~~v~~~~~~~~~--l~~~~~d~  170 (342)
T 1yfq_A          148 -------------------------------------------------------KVKNKIFTMDTNSSR--LIVGMNNS  170 (342)
T ss_dssp             -------------------------------------------------------SSCCCEEEEEECSSE--EEEEESTT
T ss_pred             -------------------------------------------------------eeCCceEEEEecCCc--EEEEeCCC
Confidence                                                                   356789999999987  99999999


Q ss_pred             cEEEEECCC-CccccccccccccccCCCCcCEEEEEEcC-CCCEEEEEECCCeEEEEECCCC------ceEEEeecC---
Q 005656          225 WIERFNLQS-GISRGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYHGDIKVWDFKGR------DLKSRWEVG---  293 (685)
Q Consensus       225 ~i~~~d~~~-~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~------~~~~~~~~~---  293 (685)
                      .|++||+.+ +......      ....|...|.+++|+| +++++++++.||.|++|++...      +....+..+   
T Consensus       171 ~i~i~d~~~~~~~~~~~------~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~  244 (342)
T 1yfq_A          171 QVQWFRLPLCEDDNGTI------EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN  244 (342)
T ss_dssp             EEEEEESSCCTTCCCEE------EECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCC
T ss_pred             eEEEEECCcccccccee------eecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccccc
Confidence            999999988 5432211      1227888999999999 9999999999999999999876      666666554   


Q ss_pred             -------CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecC-CCCeEEEEEcCCCCEEEEEeCCCc-EEEEEc
Q 005656          294 -------CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH-TDRITDFCFSEDGKWLLSSGMDGS-LRIWDV  364 (685)
Q Consensus       294 -------~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h-~~~I~~l~~spdg~~l~s~s~Dg~-I~iwd~  364 (685)
                             ..+.+++|+|++++|++++.||.|++||+.+++.+..+.+| ...|++++  |++++|++++.||+ .+.|..
T Consensus       245 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~~  322 (342)
T 1yfq_A          245 LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             TTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred             ccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCcccccccc
Confidence                   28999999999999999999999999999999999999998 99999999  99999999999998 555553

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.3e-35  Score=299.17  Aligned_cols=258  Identities=16%  Similarity=0.260  Sum_probs=203.3

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCC--CeeeEEeecccccCeeEEEEeCC--CcEEEEecCCCcEEEEEec
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEK--RRLQSVIREAHDNAIISLHFFAN--EPVLMSASADNSIKMWIFD   76 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~--~~~~~~~~~~h~~~V~~l~~sp~--~~~l~s~s~D~~v~iWd~~   76 (685)
                      |++.|++++|+|+|+ +||+|+.||.|+|||+.+  .+++..+. +|.++|.+++|+|+  +++|+|++.|++|++||+.
T Consensus         8 h~~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~~~~~~~l~-gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~   85 (297)
T 2pm7_B            8 HNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEE   85 (297)
T ss_dssp             CSSCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSCBCCCEEEC-CCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBS
T ss_pred             CcCceEEEEECCCCC-EEEEEeCCCEEEEEecCCCCcEEEEEEc-cccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcC
Confidence            889999999999999 999999999999999975  46677887 99999999999864  8899999999999999987


Q ss_pred             CCCCCCceeEecccCCCCCeEEEEecC--CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCce
Q 005656           77 TTDGDPRLLRFRSGHSAPPLCIRFYAN--GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV  154 (685)
Q Consensus        77 ~~~~~~~~~~~~~~h~~~v~~i~~~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (685)
                      .+.  ...+..+.+|...|.+++|+|+  +.+|++++.||+|++||+.++......                        
T Consensus        86 ~~~--~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~------------------------  139 (297)
T 2pm7_B           86 NGR--WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPI------------------------  139 (297)
T ss_dssp             SSC--BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCE------------------------
T ss_pred             CCc--eEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeee------------------------
Confidence            642  2344556789999999999997  889999999999999998654211000                        


Q ss_pred             eeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCC
Q 005656          155 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG  234 (685)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~  234 (685)
                                                                ....|...+.+++|+|++..-     .+          
T Consensus       140 ------------------------------------------~~~~h~~~v~~~~~~p~~~~~-----~~----------  162 (297)
T 2pm7_B          140 ------------------------------------------IIDAHAIGVNSASWAPATIEE-----DG----------  162 (297)
T ss_dssp             ------------------------------------------EEECCSSCEEEEEECCCC--------------------
T ss_pred             ------------------------------------------eeecccCccceEeecCCcccc-----cc----------
Confidence                                                      000455667777777654210     00          


Q ss_pred             ccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc----eEEEee-cCCceeEEEEeecC---C
Q 005656          235 ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD----LKSRWE-VGCSLVKIVYHRVN---G  306 (685)
Q Consensus       235 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~----~~~~~~-~~~~i~~~~~~~~~---~  306 (685)
                                     .+       ...+++++|++|+.|++|++||++++.    ....+. +...|.+++|+|++   .
T Consensus       163 ---------------~~-------~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~  220 (297)
T 2pm7_B          163 ---------------EH-------NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS  220 (297)
T ss_dssp             -----------------------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred             ---------------cC-------CCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCce
Confidence                           00       011246789999999999999998765    444554 44789999999985   7


Q ss_pred             EEEEEeCCCeEEEEEcCCCe---eEEEE--ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005656          307 LLATVADDLVIRLFDVVALR---MVRKF--EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI  365 (685)
Q Consensus       307 ~l~~~~~dg~I~i~d~~~~~---~~~~~--~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~  365 (685)
                      +|++++.|++|++||+.+..   ....+  .+|...|.+++|+|+|++|++++.||+|++|+..
T Consensus       221 ~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          221 YMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             EEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             EEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            99999999999999998742   12233  4688899999999999999999999999999976

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7.3e-37  Score=319.73  Aligned_cols=287  Identities=11%  Similarity=0.090  Sum_probs=224.7

Q ss_pred             ccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeec
Q 005656           44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ  123 (685)
Q Consensus        44 ~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~  123 (685)
                      .|.++|++++|+|++++|++++.|+.|++|++..+.  .+.+..+.+|..+|.+++|+|++++|++++.||+|++||+.+
T Consensus         9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~--~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~   86 (377)
T 3dwl_C            9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG--WKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP   86 (377)
T ss_dssp             ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE--EEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred             cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc--eEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence            567899999999999999999999999999998641  245566789999999999999999999999999999999977


Q ss_pred             CceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCC
Q 005656          124 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT  203 (685)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  203 (685)
                      +......                                                                 .....+..
T Consensus        87 ~~~~~~~-----------------------------------------------------------------~~~~~~~~  101 (377)
T 3dwl_C           87 DGTWKQT-----------------------------------------------------------------LVLLRLNR  101 (377)
T ss_dssp             --CCCCE-----------------------------------------------------------------EECCCCSS
T ss_pred             CCceeee-----------------------------------------------------------------eEecccCC
Confidence            6510000                                                                 00115778


Q ss_pred             CeEEEEEccCCCEEEEEecCCcEEEEECCCCcc---ccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 005656          204 AVKACTISACGNFAVLGTAGGWIERFNLQSGIS---RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD  280 (685)
Q Consensus       204 ~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~---~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd  280 (685)
                      .|.+++|+|+++++++|+.||.|++||+.++..   ...+.       ..|...|.+++|+|++++|++++.||.|++||
T Consensus       102 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-------~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  174 (377)
T 3dwl_C          102 AATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLK-------RPLRSTILSLDWHPNNVLLAAGCADRKAYVLS  174 (377)
T ss_dssp             CEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEEC-------SSCCSCEEEEEECTTSSEEEEEESSSCEEEEE
T ss_pred             ceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEee-------cccCCCeEEEEEcCCCCEEEEEeCCCEEEEEE
Confidence            899999999999999999999999999998863   33332       13999999999999999999999999999999


Q ss_pred             CC------------------CCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCee----EEEEecCCCCe
Q 005656          281 FK------------------GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM----VRKFEGHTDRI  338 (685)
Q Consensus       281 ~~------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~----~~~~~~h~~~I  338 (685)
                      +.                  .+++...+.+...+.+++|+|++++|++++.|+.|++||+.+++.    +..+.+|...|
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v  254 (377)
T 3dwl_C          175 AYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPL  254 (377)
T ss_dssp             ECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCE
T ss_pred             EEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCce
Confidence            85                  244555555568899999999999999999999999999999987    78899999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEcCCCc--e-------------------------e---------eEEe--------
Q 005656          339 TDFCFSEDGKWLLSSGMDGSLRIWDVILAR--Q-------------------------I---------DAIH--------  374 (685)
Q Consensus       339 ~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~--~-------------------------i---------~~~~--------  374 (685)
                      ++++|+|+|++|++++.|+.+ +|+...+.  .                         .         ..+.        
T Consensus       255 ~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  333 (377)
T 3dwl_C          255 RSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSS  333 (377)
T ss_dssp             EEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC----------------------
T ss_pred             EEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhcccc
Confidence            999999999999999877655 66654211  0                         0         0111        


Q ss_pred             ---------eccceEEEEEcCCCC----eEEEEEeCCCeEEEEEc
Q 005656          375 ---------VDVSITALSLSPNMD----VLATAHVDQNGVYLWVN  406 (685)
Q Consensus       375 ---------~~~~v~~v~~spdg~----~Lat~~~d~~~I~lW~~  406 (685)
                               +...|+++++.+...    .|++++.|| .|++|+.
T Consensus       334 ~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg-~i~iWdl  377 (377)
T 3dwl_C          334 QSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDG-RVVLWTL  377 (377)
T ss_dssp             ---CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTS-EEEEECC
T ss_pred             ccccccCccccceeEEEeccCCCCCceEEEEeecCCC-cEEEecC
Confidence                     344599999766443    699999997 9999973

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3.2e-35  Score=296.31  Aligned_cols=245  Identities=18%  Similarity=0.244  Sum_probs=201.6

Q ss_pred             ccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecC--CCEEEEEeCCCceEEEEe
Q 005656           44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--GRHILSAGQDRAFRLFSV  121 (685)
Q Consensus        44 ~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~--~~~l~s~s~dg~i~vwd~  121 (685)
                      +|.+.|++++|+|+|++|++|+.|++|++|++....  .+.+..+.+|.++|.+++|+++  +++|++|+.||+|++||+
T Consensus         7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~--~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~   84 (297)
T 2pm7_B            7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET--HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKE   84 (297)
T ss_dssp             SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC--BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEB
T ss_pred             CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC--cEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEc
Confidence            899999999999999999999999999999987532  2566778899999999999863  889999999999999998


Q ss_pred             ecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCC
Q 005656          122 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN  201 (685)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  201 (685)
                      .++.....                                                                        
T Consensus        85 ~~~~~~~~------------------------------------------------------------------------   92 (297)
T 2pm7_B           85 ENGRWSQI------------------------------------------------------------------------   92 (297)
T ss_dssp             SSSCBCCC------------------------------------------------------------------------
T ss_pred             CCCceEEE------------------------------------------------------------------------
Confidence            54321000                                                                        


Q ss_pred             CCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCC--CCEEEEEECCCeEEEE
Q 005656          202 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST--NTLMISAGYHGDIKVW  279 (685)
Q Consensus       202 ~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~s~dg~i~iw  279 (685)
                                                          .        ....|...|.+++|+|+  +.+|++++.||+|++|
T Consensus        93 ------------------------------------~--------~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~w  128 (297)
T 2pm7_B           93 ------------------------------------A--------VHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVV  128 (297)
T ss_dssp             ------------------------------------E--------EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEE
T ss_pred             ------------------------------------E--------EeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEE
Confidence                                                0        00168888999999987  7889999999999999


Q ss_pred             ECCCCce--EEEe-ecCCceeEEEEeec-------------CCEEEEEeCCCeEEEEEcCCCe----eEEEEecCCCCeE
Q 005656          280 DFKGRDL--KSRW-EVGCSLVKIVYHRV-------------NGLLATVADDLVIRLFDVVALR----MVRKFEGHTDRIT  339 (685)
Q Consensus       280 d~~~~~~--~~~~-~~~~~i~~~~~~~~-------------~~~l~~~~~dg~I~i~d~~~~~----~~~~~~~h~~~I~  339 (685)
                      |++++..  ...+ .+...+.+++|+|+             +++|++|+.|+.|++||+.+++    ....+.+|...|+
T Consensus       129 d~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~  208 (297)
T 2pm7_B          129 EFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVR  208 (297)
T ss_dssp             EBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEE
T ss_pred             EecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceE
Confidence            9886531  2223 34578999999997             5799999999999999998765    6678899999999


Q ss_pred             EEEEcCCC---CEEEEEeCCCcEEEEEcCCCce---eeEE---eeccceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          340 DFCFSEDG---KWLLSSGMDGSLRIWDVILARQ---IDAI---HVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       340 ~l~~spdg---~~l~s~s~Dg~I~iwd~~~~~~---i~~~---~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                      +++|+|++   ++|++++.|++|++||+.++..   ...+   .+...|.+++|+|+|++||+++.|+ .|++|+..
T Consensus       209 ~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~-~v~lw~~~  284 (297)
T 2pm7_B          209 DVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN-KVTLWKEN  284 (297)
T ss_dssp             EEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTS-CEEEEEEC
T ss_pred             EEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCC-cEEEEEEC
Confidence            99999985   8999999999999999987531   1222   2345599999999999999999997 99999854

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.8e-36  Score=313.36  Aligned_cols=298  Identities=11%  Similarity=0.075  Sum_probs=232.1

Q ss_pred             CCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCC
Q 005656            2 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD   81 (685)
Q Consensus         2 ~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~   81 (685)
                      .+.|.+++|||||+ ++||++.|++|+  |...++   .+. +|...|.+++|+|+|       .++.+.+|+.+..   
T Consensus        15 ~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~---~l~-gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~---   77 (588)
T 2j04_A           15 EDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAK---DIN-CNSKNLFHVKEFPLE-------FENKLDFELAQQN---   77 (588)
T ss_dssp             SSSSCCEEECTTSC-EEEECSSSEEEE--EECCCS---CCS-SBGGGTEEEEEECCC-------CCCTTTTSCCCSS---
T ss_pred             hccEEEEEECCCCC-EEEEEcCCceee--cccccc---eec-CCCccEEEEEECCCC-------CcceEEEEeCCCc---
Confidence            56899999999999 999999999999  755554   445 999999999999999       5666666643321   


Q ss_pred             CceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccc
Q 005656           82 PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE  161 (685)
Q Consensus        82 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (685)
                        ....+ +|...|.+++|+|+|++|++++.||.|++|+...  ....+. .                            
T Consensus        78 --~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~----------------------------  123 (588)
T 2j04_A           78 --GLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-S----------------------------  123 (588)
T ss_dssp             --CSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-C----------------------------
T ss_pred             --eEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-C----------------------------
Confidence              11222 5688999999999999999999999999999432  111110 0                            


Q ss_pred             ccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcc-----
Q 005656          162 IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS-----  236 (685)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~-----  236 (685)
                                                         ...-....+.+++|||+|+++++|+.||.|++||+.++..     
T Consensus       124 -----------------------------------~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~  168 (588)
T 2j04_A          124 -----------------------------------KGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEF  168 (588)
T ss_dssp             -----------------------------------SSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCC
T ss_pred             -----------------------------------CCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccc
Confidence                                               0001134699999999999999999999999999998753     


Q ss_pred             --ccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCce---EEEee--cCCceeEEEEeecCCEEE
Q 005656          237 --RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDL---KSRWE--VGCSLVKIVYHRVNGLLA  309 (685)
Q Consensus       237 --~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~--~~~~i~~~~~~~~~~~l~  309 (685)
                        ...+..    ...+|...|.+++|+|+|  +++++.|++|++||+.++..   ..++.  +...|.+++|+  |+.||
T Consensus       169 i~l~ti~~----~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LA  240 (588)
T 2j04_A          169 YFESSIRL----SDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVV  240 (588)
T ss_dssp             EEEEEEEC----SCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEE
T ss_pred             eeeeeeec----ccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEE
Confidence              222210    113788999999999999  88899999999999998774   34553  34789999999  68999


Q ss_pred             EEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEE--cCCCCEEEEEeCCCcEEEEEcCC------C--------------
Q 005656          310 TVADDLVIRLFDVVALRMVRKFEGHTDRITDFCF--SEDGKWLLSSGMDGSLRIWDVIL------A--------------  367 (685)
Q Consensus       310 ~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~--spdg~~l~s~s~Dg~I~iwd~~~------~--------------  367 (685)
                      +++ ++.|++||+.+++......+|.+.|.+++|  +||+..|++++.||+ ++|....      +              
T Consensus       241 Sa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~  318 (588)
T 2j04_A          241 LTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWS  318 (588)
T ss_dssp             EEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTT
T ss_pred             EEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEE
Confidence            987 699999999998875444489999999999  999999999999999 9998631      1              


Q ss_pred             ---ceeeEEeeccceEEEEEcCCCCeEEEEE
Q 005656          368 ---RQIDAIHVDVSITALSLSPNMDVLATAH  395 (685)
Q Consensus       368 ---~~i~~~~~~~~v~~v~~spdg~~Lat~~  395 (685)
                         ..+..+.....|.+++|||||+.+|+++
T Consensus       319 ~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~  349 (588)
T 2j04_A          319 TIWNEFNNYETTLVIHGISLSPDGYSIAIVY  349 (588)
T ss_dssp             TTTTSSSSSCCEEEEEEEEECTTSSEEEEEE
T ss_pred             CCCCceeeeccceEEEEEEECCCCCEEEEEE
Confidence               1122222333499999999999999986

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.8e-34  Score=309.03  Aligned_cols=290  Identities=17%  Similarity=0.268  Sum_probs=247.7

Q ss_pred             eeEEeecccccCe-eEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCc
Q 005656           37 LQSVIREAHDNAI-ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA  115 (685)
Q Consensus        37 ~~~~~~~~h~~~V-~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~  115 (685)
                      ....+. +|.+.| .++.+  ++++|++|+.||+|++||+.++    +.+..+.+|..+|.+++|+|++ .+++|+.||+
T Consensus       113 ~~~~l~-~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~----~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~  184 (464)
T 3v7d_B          113 QRTTLR-GHMTSVITCLQF--EDNYVITGADDKMIRVYDSINK----KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRT  184 (464)
T ss_dssp             EEEEEE-CCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECSTT-EEEEEETTSC
T ss_pred             ceEEEc-CCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCC----cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCC
Confidence            445666 888875 56555  5679999999999999998877    7788888999999999999988 9999999999


Q ss_pred             eEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceee
Q 005656          116 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL  195 (685)
Q Consensus       116 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  195 (685)
                      |++||+.+++....+.                                                                
T Consensus       185 i~vwd~~~~~~~~~~~----------------------------------------------------------------  200 (464)
T 3v7d_B          185 VRVWDIKKGCCTHVFE----------------------------------------------------------------  200 (464)
T ss_dssp             EEEEETTTTEEEEEEC----------------------------------------------------------------
T ss_pred             EEEEECCCCcEEEEEC----------------------------------------------------------------
Confidence            9999998876655442                                                                


Q ss_pred             cCCCCCCCCeEEEEEc--cCCCEEEEEecCCcEEEEECCCCccccccccc---------------cccccCCCCcCEEEE
Q 005656          196 RPCPENPTAVKACTIS--ACGNFAVLGTAGGWIERFNLQSGISRGSYLDM---------------SERSNYAHNGEVVGV  258 (685)
Q Consensus       196 ~~~~~~~~~v~~~~~s--~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~---------------~~~~~~~h~~~v~~l  258 (685)
                          .+...|.+++++  ++++++++|+.||.|++||+.++.........               ......+|...|.++
T Consensus       201 ----~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  276 (464)
T 3v7d_B          201 ----GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV  276 (464)
T ss_dssp             ----CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE
T ss_pred             ----CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE
Confidence                577889999998  58899999999999999999987644321100               011234788888887


Q ss_pred             EEcCCCCEEEEEECCCeEEEEECCCCceEEEeec-CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCC
Q 005656          259 ACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDR  337 (685)
Q Consensus       259 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~  337 (685)
                        ++++.++++++.||.|++||+.+++.+..+.. ...+.+++|+|+++++++|+.||.|++||+.+++++..+.+|...
T Consensus       277 --~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~  354 (464)
T 3v7d_B          277 --SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL  354 (464)
T ss_dssp             --EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred             --cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCc
Confidence              46788999999999999999999998888764 488999999999999999999999999999999999999999999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656          338 ITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRC  408 (685)
Q Consensus       338 I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~  408 (685)
                      |++++|+  +++|++++.||.|++||+.++...........+..++|+|++.+|++++ |+ .|++|+.+.
T Consensus       355 v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg-~i~iwd~~~  421 (464)
T 3v7d_B          355 VGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-EN-QFNIYNLRS  421 (464)
T ss_dssp             EEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TT-EEEEEETTT
T ss_pred             EEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CC-eEEEEECCC
Confidence            9999997  5899999999999999999998887777777789999999999999998 76 999999654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=8.6e-35  Score=299.44  Aligned_cols=272  Identities=14%  Similarity=0.173  Sum_probs=235.9

Q ss_pred             cccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCC-EEEEEeCCCceEEEEe
Q 005656           43 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQDRAFRLFSV  121 (685)
Q Consensus        43 ~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~s~dg~i~vwd~  121 (685)
                      .+|.+.|++++|+|++++|++++.|+.|++|++...... .......+|...|.+++|+|+++ +|++++.||.|++||+
T Consensus         8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~   86 (342)
T 1yfq_A            8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN-VDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL   86 (342)
T ss_dssp             SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE-EEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcc-ccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence            389999999999999999999999999999999876321 12344558999999999999999 9999999999999998


Q ss_pred             -ecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCC
Q 005656          122 -IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE  200 (685)
Q Consensus       122 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  200 (685)
                       .++.. ..+.                                                                    .
T Consensus        87 ~~~~~~-~~~~--------------------------------------------------------------------~   97 (342)
T 1yfq_A           87 IGSPSF-QALT--------------------------------------------------------------------N   97 (342)
T ss_dssp             SSSSSE-EECB--------------------------------------------------------------------S
T ss_pred             ccCCce-Eecc--------------------------------------------------------------------c
Confidence             66543 1111                                                                    4


Q ss_pred             --CCCCeEEEEEccCCCEEEEEecCCcEEEEECCC---------CccccccccccccccCCCCcCEEEEEEcCCCCEEEE
Q 005656          201 --NPTAVKACTISACGNFAVLGTAGGWIERFNLQS---------GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS  269 (685)
Q Consensus       201 --~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~---------~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s  269 (685)
                        +...|.+++|+| ++++++++.||.|++||+.+         +.....+         .|...|.+++|+|++  +++
T Consensus        98 ~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~--l~~  165 (342)
T 1yfq_A           98 NEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT---------KVKNKIFTMDTNSSR--LIV  165 (342)
T ss_dssp             CCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS---------SSCCCEEEEEECSSE--EEE
T ss_pred             cCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEE---------eeCCceEEEEecCCc--EEE
Confidence              778899999999 99999999999999999987         5544443         588999999999887  999


Q ss_pred             EECCCeEEEEECCC-CceE---EEeecCCceeEEEEee-cCCEEEEEeCCCeEEEEEcCCC------eeEEEEecCCC--
Q 005656          270 AGYHGDIKVWDFKG-RDLK---SRWEVGCSLVKIVYHR-VNGLLATVADDLVIRLFDVVAL------RMVRKFEGHTD--  336 (685)
Q Consensus       270 ~s~dg~i~iwd~~~-~~~~---~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~I~i~d~~~~------~~~~~~~~h~~--  336 (685)
                      ++.||.|++||+++ +...   ....+...+.+++|+| +++++++++.||.|++|++...      +....+.+|..  
T Consensus       166 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~  245 (342)
T 1yfq_A          166 GMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNL  245 (342)
T ss_dssp             EESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCT
T ss_pred             EeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccc
Confidence            99999999999998 5432   2334457899999999 9999999999999999999887      78888888865  


Q ss_pred             -------CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeec--cceEEEEEcCCCCeEEEEEeCC
Q 005656          337 -------RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVD--VSITALSLSPNMDVLATAHVDQ  398 (685)
Q Consensus       337 -------~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~--~~v~~v~~spdg~~Lat~~~d~  398 (685)
                             .|++++|+|++++|++++.||.|++||+.+++.+..+..+  .+|++++  |+|++|++++.|+
T Consensus       246 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg  314 (342)
T 1yfq_A          246 KDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDD  314 (342)
T ss_dssp             TCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECT
T ss_pred             cccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCC
Confidence                   9999999999999999999999999999999999988765  4599999  9999999999997

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.8e-35  Score=312.15  Aligned_cols=307  Identities=15%  Similarity=0.199  Sum_probs=250.3

Q ss_pred             CCCcEEEEeCCCCeeeEEeecccccCeeEEEEeC-CCcEEEEecCCCcEEEEEecCCCCCCceeEe---------cccCC
Q 005656           23 SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVLMSASADNSIKMWIFDTTDGDPRLLRF---------RSGHS   92 (685)
Q Consensus        23 ~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~---------~~~h~   92 (685)
                      .++.+++|++..++....+. +|.+.|++++|+| ++++|++++.||.|++|++............         ..+|.
T Consensus        21 ~~~~~~v~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (408)
T 4a11_B           21 AESTRRVLGLELNKDRDVER-IHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR   99 (408)
T ss_dssp             HHHHHHHHTEEECTTEEECC-CCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCS
T ss_pred             ccCcceeeccccCcceeeee-ccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCC
Confidence            34568889988888887887 8999999999999 9999999999999999999876433222110         13699


Q ss_pred             CCCeEEEEec-CCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceE
Q 005656           93 APPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVV  171 (685)
Q Consensus        93 ~~v~~i~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (685)
                      ..|.+++|+| ++.+|++++.||.|++||+.+++....+                                         
T Consensus       100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-----------------------------------------  138 (408)
T 4a11_B          100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVF-----------------------------------------  138 (408)
T ss_dssp             SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEE-----------------------------------------
T ss_pred             CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceec-----------------------------------------
Confidence            9999999999 7789999999999999999877655444                                         


Q ss_pred             EEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccC---CCEEEEEecCCcEEEEECCCCcccccccccccccc
Q 005656          172 TCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC---GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSN  248 (685)
Q Consensus       172 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~  248 (685)
                                                  .+...+.++++++.   +.++++|+.+|.|++||+.++.....+.       
T Consensus       139 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-------  183 (408)
T 4a11_B          139 ----------------------------NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ-------  183 (408)
T ss_dssp             ----------------------------ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC-------
T ss_pred             ----------------------------cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec-------
Confidence                                        23556788888884   4599999999999999999988776654       


Q ss_pred             CCCCcCEEEEEEcCCCC-EEEEEECCCeEEEEECCCCc-eEEEe----------------ecCCceeEEEEeecCCEEEE
Q 005656          249 YAHNGEVVGVACDSTNT-LMISAGYHGDIKVWDFKGRD-LKSRW----------------EVGCSLVKIVYHRVNGLLAT  310 (685)
Q Consensus       249 ~~h~~~v~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~~-~~~~~----------------~~~~~i~~~~~~~~~~~l~~  310 (685)
                       .|...|.+++|+|++. .+++++.||.|++||++++. ....+                .+...+.+++|+|++++|++
T Consensus       184 -~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  262 (408)
T 4a11_B          184 -GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLT  262 (408)
T ss_dssp             -CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEE
T ss_pred             -CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEE
Confidence             7999999999999998 58999999999999998764 33332                34478999999999999999


Q ss_pred             EeCCCeEEEEEcCCCeeEEEEecCC-----CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeecc-ceEEEEE
Q 005656          311 VADDLVIRLFDVVALRMVRKFEGHT-----DRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALSL  384 (685)
Q Consensus       311 ~~~dg~I~i~d~~~~~~~~~~~~h~-----~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~-~v~~v~~  384 (685)
                      ++.||.|++||+.+++....+.++.     ..+........+..+++++.|+.|++||+.+++.+..+..+. .|++++|
T Consensus       263 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~  342 (408)
T 4a11_B          263 VGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVF  342 (408)
T ss_dssp             EETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred             ecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEE
Confidence            9999999999999987765544332     122222223345567777889999999999999999998654 5999999


Q ss_pred             cCCCCeEEEEEeCCCeEEEEEcCC
Q 005656          385 SPNMDVLATAHVDQNGVYLWVNRC  408 (685)
Q Consensus       385 spdg~~Lat~~~d~~~I~lW~~~~  408 (685)
                      +|++++|++++.|+ .|++|+...
T Consensus       343 s~~~~~l~s~~~dg-~i~iw~~~~  365 (408)
T 4a11_B          343 QSNFQELYSGSRDC-NILAWVPSL  365 (408)
T ss_dssp             ETTTTEEEEEETTS-CEEEEEECC
T ss_pred             cCCCCEEEEECCCC-eEEEEeCCC
Confidence            99999999999997 999998654

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=7.2e-35  Score=302.89  Aligned_cols=282  Identities=17%  Similarity=0.252  Sum_probs=231.9

Q ss_pred             CCCcEEEEEEccC---CCCEEEEEeCCCcEEEEeCCC-Ceee-EEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEe
Q 005656            1 MRGAVTALAFSSD---GQPLLASGASSGVISIWNLEK-RRLQ-SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF   75 (685)
Q Consensus         1 h~~~V~~l~fspd---g~~~latg~~dg~I~vwd~~~-~~~~-~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~   75 (685)
                      |++.|++++|+|+   |+ +|++|+.||.|++||+.+ +... ..+. +|.+.|++++|+|++++|++++.||.|++||+
T Consensus        38 h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~  115 (368)
T 3mmy_A           38 PDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIPKAQQ-MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDL  115 (368)
T ss_dssp             CSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             CCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeEEEec-cccCCEEEEEECcCCCEEEEEcCCCcEEEEEc
Confidence            7899999999999   57 999999999999999997 5555 5665 89999999999999999999999999999999


Q ss_pred             cCCCCCCceeEecccCCCCCeEEEE--ecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCc
Q 005656           76 DTTDGDPRLLRFRSGHSAPPLCIRF--YANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKP  153 (685)
Q Consensus        76 ~~~~~~~~~~~~~~~h~~~v~~i~~--~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (685)
                      ..+    ..+. ..+|..+|.+++|  +|++++|++++.||.|++||+.+++....+.                      
T Consensus       116 ~~~----~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~----------------------  168 (368)
T 3mmy_A          116 SSN----QAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ----------------------  168 (368)
T ss_dssp             TTT----EEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEE----------------------
T ss_pred             CCC----Ccee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEe----------------------
Confidence            876    4443 4679999999999  8899999999999999999998876555442                      


Q ss_pred             eeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCC
Q 005656          154 VIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS  233 (685)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~  233 (685)
                                                                     ....+.++.+.  +..+++++.++.+.+|++..
T Consensus       169 -----------------------------------------------~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~  199 (368)
T 3mmy_A          169 -----------------------------------------------LPERCYCADVI--YPMAVVATAERGLIVYQLEN  199 (368)
T ss_dssp             -----------------------------------------------CSSCEEEEEEE--TTEEEEEEGGGCEEEEECSS
T ss_pred             -----------------------------------------------cCCCceEEEec--CCeeEEEeCCCcEEEEEecc
Confidence                                                           12234444444  56889999999999999987


Q ss_pred             CccccccccccccccCCCCcCEEEEEEcCCCCE----EEEEECCCeEEEEECCCC---ceEEEeecCC------------
Q 005656          234 GISRGSYLDMSERSNYAHNGEVVGVACDSTNTL----MISAGYHGDIKVWDFKGR---DLKSRWEVGC------------  294 (685)
Q Consensus       234 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~----l~s~s~dg~i~iwd~~~~---~~~~~~~~~~------------  294 (685)
                      ........      ...+...+.++.+.++...    +++++.||.|++||+...   .....+..+.            
T Consensus       200 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (368)
T 3mmy_A          200 QPSEFRRI------ESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDI  273 (368)
T ss_dssp             SCEEEEEC------CCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEE
T ss_pred             ccchhhhc------cccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccc
Confidence            65433321      1134445566666555443    999999999999999987   4455555543            


Q ss_pred             -ceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005656          295 -SLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL  366 (685)
Q Consensus       295 -~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~  366 (685)
                       ++.+++|+|++++|++|+.||.|++||+.+++.+..+.+|...|++++|+|+|++|++++.|+..+.|++..
T Consensus       274 ~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~  346 (368)
T 3mmy_A          274 YAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYN  346 (368)
T ss_dssp             CCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred             cceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccC
Confidence             699999999999999999999999999999999999999999999999999999999999998666665443

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=3.5e-35  Score=298.81  Aligned_cols=263  Identities=14%  Similarity=0.191  Sum_probs=204.4

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe--eeEEeecccccCeeEEEEeC--CCcEEEEecCCCcEEEEEec
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR--LQSVIREAHDNAIISLHFFA--NEPVLMSASADNSIKMWIFD   76 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~--~~~~~~~~h~~~V~~l~~sp--~~~~l~s~s~D~~v~iWd~~   76 (685)
                      |+++|++++|+|+|+ +||+|+.|++|+|||+.++.  .+..+. +|.+.|.+++|+|  ++++|++++.|++|++||+.
T Consensus        12 H~~~V~~v~~s~~g~-~lasgs~D~~v~lwd~~~~~~~~~~~l~-gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~   89 (316)
T 3bg1_A           12 HEDMIHDAQMDYYGT-RLATCSSDRSVKIFDVRNGGQILIADLR-GHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREE   89 (316)
T ss_dssp             --CCEEEEEECGGGC-EEEEEETTTEEEEEEEETTEEEEEEEEE-CCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCS
T ss_pred             ccCeEEEeeEcCCCC-EEEEEeCCCeEEEEEecCCCcEEEEEEc-CCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECC
Confidence            889999999999999 99999999999999998875  456777 9999999999986  48899999999999999887


Q ss_pred             CCCCCCceeEecccCCCCCeEEEEecC--CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCce
Q 005656           77 TTDGDPRLLRFRSGHSAPPLCIRFYAN--GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV  154 (685)
Q Consensus        77 ~~~~~~~~~~~~~~h~~~v~~i~~~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (685)
                      .+.  ......+.+|...|.+++|+|+  +.+|++++.||+|++||+..+......                        
T Consensus        90 ~~~--~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~------------------------  143 (316)
T 3bg1_A           90 NGT--WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVK------------------------  143 (316)
T ss_dssp             SSC--CCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEEC------------------------
T ss_pred             CCc--ceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCccee------------------------
Confidence            542  2345567799999999999998  789999999999999998754221100                        


Q ss_pred             eeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCC
Q 005656          155 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG  234 (685)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~  234 (685)
                                                               .....|...+.+++|+|++..       +.+  .+... 
T Consensus       144 -----------------------------------------~~~~~h~~~v~~~~~~~~~~~-------~~~--~~~~~-  172 (316)
T 3bg1_A          144 -----------------------------------------KINNAHTIGCNAVSWAPAVVP-------GSL--IDHPS-  172 (316)
T ss_dssp             -----------------------------------------CBTTSSSSCBCCCEECCCCCC---------------CC-
T ss_pred             -----------------------------------------eeeccccCCcceEEEccccCC-------ccc--ccccc-
Confidence                                                     011145666777888876420       000  00000 


Q ss_pred             ccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCC---ceEEEeec-CCceeEEEEeecC----C
Q 005656          235 ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR---DLKSRWEV-GCSLVKIVYHRVN----G  306 (685)
Q Consensus       235 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~-~~~i~~~~~~~~~----~  306 (685)
                                     ++        ....+++|++|+.|++|++||+...   +....+.. ...|.+++|+|++    .
T Consensus       173 ---------------~~--------~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~  229 (316)
T 3bg1_A          173 ---------------GQ--------KPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTS  229 (316)
T ss_dssp             ---------------SC--------CCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCC
T ss_pred             ---------------cc--------CccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCc
Confidence                           10        1123578999999999999999754   34445543 4789999999987    7


Q ss_pred             EEEEEeCCCeEEEEEcCCC---e-eEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005656          307 LLATVADDLVIRLFDVVAL---R-MVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI  365 (685)
Q Consensus       307 ~l~~~~~dg~I~i~d~~~~---~-~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~  365 (685)
                      +|++|+.|++|++||+.+.   + ....+.+|...|.+++|+|+|++|++++.||+|++|+..
T Consensus       230 ~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          230 TIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             EEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             eEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            9999999999999999863   1 233456789999999999999999999999999999976

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.5e-36  Score=323.78  Aligned_cols=282  Identities=10%  Similarity=0.095  Sum_probs=216.9

Q ss_pred             CCCcEEEEEEccC------CCCEEEEEeCCCcEEEEeCCCCee-----------eEEeecccccCeeEEEEeCCCcEEEE
Q 005656            1 MRGAVTALAFSSD------GQPLLASGASSGVISIWNLEKRRL-----------QSVIREAHDNAIISLHFFANEPVLMS   63 (685)
Q Consensus         1 h~~~V~~l~fspd------g~~~latg~~dg~I~vwd~~~~~~-----------~~~~~~~h~~~V~~l~~sp~~~~l~s   63 (685)
                      |.+.|++++|+|+      +. +||+|+.||+|+|||+.++..           ...+. +|...|++++|++++ .|++
T Consensus       206 ~~~~V~~v~wsp~~~~~~~~~-~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~-~h~~~v~sv~~s~~~-~las  282 (524)
T 2j04_B          206 SFGEVWDLKWHEGCHAPHLVG-CLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS-LADSLITTFDFLSPT-TVVC  282 (524)
T ss_dssp             CCCSEEEEEECSSCCCSSSSC-EEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC-CTTTCEEEEEESSSS-EEEE
T ss_pred             cCCcEEEEEECCCCCCCCCCc-eEEEEecCCeEEEEEcCCCccccccceeecCceEEEE-cCCCCEEEEEecCCC-eEEE
Confidence            5688999999997      45 999999999999999987642           23555 899999999999865 8999


Q ss_pred             ecCCCcEEEEEecCCCCCCceeEecccCCCCCeEE--EEecCC-CEEEEEeCCCceEEEEeecCceeeEechhhHHHHHh
Q 005656           64 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI--RFYANG-RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRAR  140 (685)
Q Consensus        64 ~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i--~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  140 (685)
                      |+.||+|++||+..+.   .....+.+|..+|+++  .|+|+| .+|+||+.||+|++||+++++....+..        
T Consensus       283 gs~DgtV~lWD~~~~~---~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~--------  351 (524)
T 2j04_B          283 GFKNGFVAEFDLTDPE---VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVS--------  351 (524)
T ss_dssp             EETTSEEEEEETTBCS---SCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEE--------
T ss_pred             EeCCCEEEEEECCCCC---CceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccc--------
Confidence            9999999999998652   3344567899999999  567887 8999999999999999987654333210        


Q ss_pred             hccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEE
Q 005656          141 KLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG  220 (685)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g  220 (685)
                                                       +                         .....+.+++|+|++..++++
T Consensus       352 ---------------------------------~-------------------------~~~~~v~~v~fsp~~~~l~s~  373 (524)
T 2j04_B          352 ---------------------------------R-------------------------FRGSNLVPVVYCPQIYSYIYS  373 (524)
T ss_dssp             ---------------------------------E-------------------------CSCCSCCCEEEETTTTEEEEE
T ss_pred             ---------------------------------c-------------------------cccCcccceEeCCCcCeEEEe
Confidence                                             0                         111347789999999999999


Q ss_pred             ecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEee------cCC
Q 005656          221 TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE------VGC  294 (685)
Q Consensus       221 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~------~~~  294 (685)
                      +.|+.|++||++++.....+.        +|.+.|++++|+|++++|++|+.||+|++||...+. .....      ...
T Consensus       374 ~~d~tv~lwd~~~~~~~~~l~--------gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~-~~~~~~~~~~~~~~  444 (524)
T 2j04_B          374 DGASSLRAVPSRAAFAVHPLV--------SRETTITAIGVSRLHPMVLAGSADGSLIITNAARRL-LHGIKNSSATQKSL  444 (524)
T ss_dssp             CSSSEEEEEETTCTTCCEEEE--------ECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSST-TTCC------CCCC
T ss_pred             CCCCcEEEEECcccccceeee--------cCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhh-ccccccCccceeee
Confidence            999999999999987766554        899999999999999999999999999999987542 22211      112


Q ss_pred             ceeEEEEeecCCEEEEEeCCCeEEEEEcC-CCeeEEEEecCCCCeEEEEEcCCCC---EEEEEeCCCcEEEEEcCC
Q 005656          295 SLVKIVYHRVNGLLATVADDLVIRLFDVV-ALRMVRKFEGHTDRITDFCFSEDGK---WLLSSGMDGSLRIWDVIL  366 (685)
Q Consensus       295 ~i~~~~~~~~~~~l~~~~~dg~I~i~d~~-~~~~~~~~~~h~~~I~~l~~spdg~---~l~s~s~Dg~I~iwd~~~  366 (685)
                      .+..++|+|+++.+. ...  .+.+|+.. ++..+..+.+|...|++++|+|++.   ++|+|+.||.|+||++.-
T Consensus       445 ~v~~v~~sp~g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          445 RLWKWDYSIKDDKYR-IDS--SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             EEEECBCCSSSCEEE-ECC--CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred             EEEEeccCCCCCeEE-ccC--CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence            467899999998553 222  23344433 5677888999999999999999964   999999999999999864

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6.5e-34  Score=299.95  Aligned_cols=278  Identities=17%  Similarity=0.268  Sum_probs=232.5

Q ss_pred             ccccC--eeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecc-cCCCCCeEEEEecCCCEEEEEeCCCceEEEE
Q 005656           44 AHDNA--IISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS-GHSAPPLCIRFYANGRHILSAGQDRAFRLFS  120 (685)
Q Consensus        44 ~h~~~--V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd  120 (685)
                      +|...  +.++.|++  ..+++++.|+.|++|++.++    +...... .|...|.+++|+|++++|++++.||.|++||
T Consensus        89 ~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~----~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd  162 (401)
T 4aez_A           89 GIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSG----SVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYD  162 (401)
T ss_dssp             TCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTC----CEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCC----cEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEE
Confidence            45444  44466654  56788889999999999876    3333333 4899999999999999999999999999999


Q ss_pred             eecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCC
Q 005656          121 VIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE  200 (685)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  200 (685)
                      +.+++....+.                                                                    .
T Consensus       163 ~~~~~~~~~~~--------------------------------------------------------------------~  174 (401)
T 4aez_A          163 VESQTKLRTMA--------------------------------------------------------------------G  174 (401)
T ss_dssp             TTTCCEEEEEC--------------------------------------------------------------------C
T ss_pred             CcCCeEEEEec--------------------------------------------------------------------C
Confidence            98776555442                                                                    5


Q ss_pred             CCCCeEEEEEccCCCEEEEEecCCcEEEEECCCC-ccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEE
Q 005656          201 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSG-ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW  279 (685)
Q Consensus       201 ~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~-~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw  279 (685)
                      +...|.+++|  +++++++|+.+|.|++||+... .....+.        +|.+.|.+++|+|++.++++++.||.|++|
T Consensus       175 ~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~s~~~d~~v~iw  244 (401)
T 4aez_A          175 HQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQ--------GHSSEVCGLAWRSDGLQLASGGNDNVVQIW  244 (401)
T ss_dssp             CSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEE--------CCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             CCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEc--------CCCCCeeEEEEcCCCCEEEEEeCCCeEEEc
Confidence            6788999999  5689999999999999999854 3343333        899999999999999999999999999999


Q ss_pred             ECCCCceEEEee-cCCceeEEEEeecCC-EEEEEe--CCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEe-
Q 005656          280 DFKGRDLKSRWE-VGCSLVKIVYHRVNG-LLATVA--DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG-  354 (685)
Q Consensus       280 d~~~~~~~~~~~-~~~~i~~~~~~~~~~-~l~~~~--~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s-  354 (685)
                      |+.+++....+. +...+.+++|+|++. ++++++  .|+.|++||+.+++.+..+. |...|++++|+|+++++++++ 
T Consensus       245 d~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g  323 (401)
T 4aez_A          245 DARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHG  323 (401)
T ss_dssp             ETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEEC
T ss_pred             cCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEee
Confidence            999998887775 458899999999775 666665  79999999999999999887 667899999999999999854 


Q ss_pred             -CCCcEEEEEcCCCceeeEE--ee-ccceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          355 -MDGSLRIWDVILARQIDAI--HV-DVSITALSLSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       355 -~Dg~I~iwd~~~~~~i~~~--~~-~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                       .||.|++||+.++......  .. ...|++++|+|+|++|++++.|+ .|++|+..
T Consensus       324 ~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg-~i~iw~~~  379 (401)
T 4aez_A          324 FPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDE-NLKFWRVY  379 (401)
T ss_dssp             TTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTS-EEEEEECC
T ss_pred             cCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCC-cEEEEECC
Confidence             8999999999997666554  33 34599999999999999999997 99999864

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=4.3e-34  Score=296.99  Aligned_cols=288  Identities=14%  Similarity=0.153  Sum_probs=240.6

Q ss_pred             EEEeCCCCeeeEEeecccccCeeEEEEeCC---CcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCC
Q 005656           28 SIWNLEKRRLQSVIREAHDNAIISLHFFAN---EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG  104 (685)
Q Consensus        28 ~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~---~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~  104 (685)
                      ..|+....+.+..+. +|.+.|++++|+|+   |++|++++.||.|++|++.....  .....+.+|..+|++++|+|++
T Consensus        22 ~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~   98 (368)
T 3mmy_A           22 TTDNHNPMKDIEVTS-SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ--TIPKAQQMHTGPVLDVCWSDDG   98 (368)
T ss_dssp             -CCSSCTTCCEECSS-CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC--EEEEEEEECSSCEEEEEECTTS
T ss_pred             ccCCCCCcceeEecc-CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc--eeEEEeccccCCEEEEEECcCC
Confidence            345556666777776 99999999999999   59999999999999999986321  3336778899999999999999


Q ss_pred             CEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEE
Q 005656          105 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR  184 (685)
Q Consensus       105 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~  184 (685)
                      ++|++++.||.|++||+.+++.....                                                      
T Consensus        99 ~~l~s~~~dg~v~iwd~~~~~~~~~~------------------------------------------------------  124 (368)
T 3mmy_A           99 SKVFTASCDKTAKMWDLSSNQAIQIA------------------------------------------------------  124 (368)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEE------------------------------------------------------
T ss_pred             CEEEEEcCCCcEEEEEcCCCCceeec------------------------------------------------------
Confidence            99999999999999999877644322                                                      


Q ss_pred             cCccccCceeecCCCCCCCCeEEEEE--ccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcC
Q 005656          185 LQNFVLGEHILRPCPENPTAVKACTI--SACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS  262 (685)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  262 (685)
                                     .+...|.+++|  +++++++++++.||.|++||+.++.....+.         ....+.++.+.+
T Consensus       125 ---------------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---------~~~~~~~~~~~~  180 (368)
T 3mmy_A          125 ---------------QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ---------LPERCYCADVIY  180 (368)
T ss_dssp             ---------------ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEE---------CSSCEEEEEEET
T ss_pred             ---------------cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEe---------cCCCceEEEecC
Confidence                           46788999999  9999999999999999999999988776663         334666776664


Q ss_pred             CCCEEEEEECCCeEEEEECCCCceEEEee---cCCceeEEEEeecCCE----EEEEeCCCeEEEEEcCCC---eeEEEEe
Q 005656          263 TNTLMISAGYHGDIKVWDFKGRDLKSRWE---VGCSLVKIVYHRVNGL----LATVADDLVIRLFDVVAL---RMVRKFE  332 (685)
Q Consensus       263 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~----l~~~~~dg~I~i~d~~~~---~~~~~~~  332 (685)
                        ..+++++.++.+++|++..........   ......++.+.++...    +++++.|+.|++||+...   +.+..+.
T Consensus       181 --~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~  258 (368)
T 3mmy_A          181 --PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFK  258 (368)
T ss_dssp             --TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEE
T ss_pred             --CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeee
Confidence              478889999999999998765433322   2356677777776654    999999999999999987   6677888


Q ss_pred             cCCC------------CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeecc-ceEEEEEcCCCCeEEEEEeCC
Q 005656          333 GHTD------------RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQ  398 (685)
Q Consensus       333 ~h~~------------~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~-~v~~v~~spdg~~Lat~~~d~  398 (685)
                      +|..            .|++++|+|++++|++++.||.|++||+.+++++..+..+. +|++++|+|+|++|++++.|+
T Consensus       259 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~  337 (368)
T 3mmy_A          259 CHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYD  337 (368)
T ss_dssp             CSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCC
T ss_pred             eeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccc
Confidence            8876            79999999999999999999999999999999998887654 599999999999999999886

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.9e-33  Score=300.80  Aligned_cols=272  Identities=18%  Similarity=0.355  Sum_probs=244.2

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG   80 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~   80 (685)
                      |.++|++++|+  +. ++++|+.||.|++||+.+++.+..+. +|...|.+++|+  ++.+++++.||+|++||+..+  
T Consensus       158 h~~~v~~~~~~--~~-~l~s~~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~--  229 (445)
T 2ovr_B          158 HTGGVWSSQMR--DN-IIISGSTDRTLKVWNAETGECIHTLY-GHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETG--  229 (445)
T ss_dssp             CSSCEEEEEEE--TT-EEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSC--
T ss_pred             CCCCEEEEEec--CC-EEEEEeCCCeEEEEECCcCcEEEEEC-CCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCC--
Confidence            78899999998  45 89999999999999999999999998 999999999996  568999999999999999876  


Q ss_pred             CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656           81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  160 (685)
Q Consensus        81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (685)
                        +.+..+.+|..+|.++.|  +++++++++.||.|++||+.+++....+.                             
T Consensus       230 --~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----------------------------  276 (445)
T 2ovr_B          230 --QCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQ-----------------------------  276 (445)
T ss_dssp             --CEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEEC-----------------------------
T ss_pred             --cEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEec-----------------------------
Confidence              677788899999999999  78899999999999999998776555442                             


Q ss_pred             cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656          161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  240 (685)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~  240 (685)
                                                             .+...+.++++  +++++++|+.||.|++||+.++.....+
T Consensus       277 ---------------------------------------~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~  315 (445)
T 2ovr_B          277 ---------------------------------------GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTL  315 (445)
T ss_dssp             ---------------------------------------CCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             ---------------------------------------CCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEE
Confidence                                                   56778899998  8899999999999999999999887766


Q ss_pred             ccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEee----cCCceeEEEEeecCCEEEEEeCCCe
Q 005656          241 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE----VGCSLVKIVYHRVNGLLATVADDLV  316 (685)
Q Consensus       241 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~  316 (685)
                      .        +|...+.++.++  +.++++++.||.|++||+.+++....+.    +...+.+++|+  ++++++|+.||.
T Consensus       316 ~--------~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~  383 (445)
T 2ovr_B          316 T--------GHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGT  383 (445)
T ss_dssp             C--------CCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSE
T ss_pred             c--------CCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCe
Confidence            4        888999998875  5699999999999999999999888886    44789999885  689999999999


Q ss_pred             EEEEEcCCCeeEEEE-----ecCCCCeEEEEEcCCCCEEEEEeCCCc----EEEEEcCC
Q 005656          317 IRLFDVVALRMVRKF-----EGHTDRITDFCFSEDGKWLLSSGMDGS----LRIWDVIL  366 (685)
Q Consensus       317 I~i~d~~~~~~~~~~-----~~h~~~I~~l~~spdg~~l~s~s~Dg~----I~iwd~~~  366 (685)
                      |++||+.+++.+..+     .+|.+.|++++|+|++.++++|+.||+    |.|||+..
T Consensus       384 v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          384 VKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             EEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             EEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence            999999999999988     478899999999999999999999998    99999875

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.5e-35  Score=304.64  Aligned_cols=328  Identities=16%  Similarity=0.160  Sum_probs=240.6

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCC--CCeeeEEeecccccCeeEEEEeCC--CcEEEEecCCCcEEEEEec
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLE--KRRLQSVIREAHDNAIISLHFFAN--EPVLMSASADNSIKMWIFD   76 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~--~~~~~~~~~~~h~~~V~~l~~sp~--~~~l~s~s~D~~v~iWd~~   76 (685)
                      |+++|++++|+|+|+ +||+|+.||.|+|||+.  +++....+. +|.+.|++++|+++  +++|++++.||.|++||+.
T Consensus        10 h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~   87 (379)
T 3jrp_A           10 HNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE   87 (379)
T ss_dssp             CCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEE
T ss_pred             CcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCcceeeeEec-CCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcC
Confidence            889999999999999 99999999999999998  566777777 89999999999987  8999999999999999998


Q ss_pred             CCCCCCceeEecccCCCCCeEEEEecC--CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCce
Q 005656           77 TTDGDPRLLRFRSGHSAPPLCIRFYAN--GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV  154 (685)
Q Consensus        77 ~~~~~~~~~~~~~~h~~~v~~i~~~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (685)
                      .+.  ...+....+|...|.+++|+|+  +.+|++++.||.|++||+..........                       
T Consensus        88 ~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-----------------------  142 (379)
T 3jrp_A           88 NGR--WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII-----------------------  142 (379)
T ss_dssp             TTE--EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEE-----------------------
T ss_pred             CCc--eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEE-----------------------
Confidence            762  1266777889999999999999  9999999999999999997664322110                       


Q ss_pred             eeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEcc-------------CCCEEEEEe
Q 005656          155 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-------------CGNFAVLGT  221 (685)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-------------~g~~l~~g~  221 (685)
                                                                 ...+...+.+++|+|             +++++++|+
T Consensus       143 -------------------------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  179 (379)
T 3jrp_A          143 -------------------------------------------IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG  179 (379)
T ss_dssp             -------------------------------------------EECCTTCEEEEEECCCC----------CTTCEEEEEE
T ss_pred             -------------------------------------------ecCCCCceEEEEEcCccccccccccCCCCCCEEEEEe
Confidence                                                       005678899999999             699999999


Q ss_pred             cCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCC---CCEEEEEECCCeEEEEECCCCc---eEEEee---c
Q 005656          222 AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST---NTLMISAGYHGDIKVWDFKGRD---LKSRWE---V  292 (685)
Q Consensus       222 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~~~l~s~s~dg~i~iwd~~~~~---~~~~~~---~  292 (685)
                      .||.|++||+.++........    ...+|...|.+++|+|+   +.++++++.||.|++||+.++.   ......   +
T Consensus       180 ~dg~i~i~d~~~~~~~~~~~~----~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  255 (379)
T 3jrp_A          180 ADNLVKIWKYNSDAQTYVLES----TLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF  255 (379)
T ss_dssp             TTSCEEEEEEETTTTEEEEEE----EECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCC
T ss_pred             CCCeEEEEEecCCCcceeeEE----EEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccC
Confidence            999999999987754322211    22379999999999999   8999999999999999999864   222222   4


Q ss_pred             CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEe---c-----CCCCeEEEEEcCC--CC-EEEEEeCCCcEEE
Q 005656          293 GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE---G-----HTDRITDFCFSED--GK-WLLSSGMDGSLRI  361 (685)
Q Consensus       293 ~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~---~-----h~~~I~~l~~spd--g~-~l~s~s~Dg~I~i  361 (685)
                      ...+.+++|+|++++|++++.||.|++|++........+.   .     +...+....|...  .. .++....+..+.+
T Consensus       256 ~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~  335 (379)
T 3jrp_A          256 PDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEVHQGGGGSGGGGATSKEFDGPCQNEIDLLFSECNDEIDN  335 (379)
T ss_dssp             SSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEEEEEEEEC----------------CEEEC--------------CT
T ss_pred             CCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCccccccceeccccCCCCCCchheeecccccchhhhhcccccccchh
Confidence            5789999999999999999999999999998553332222   1     1122333333221  00 1111111111111


Q ss_pred             EEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656          362 WDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       362 wd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~  406 (685)
                      +..    .....+...+.....|+|+|.+|+....+..+|+.+.+
T Consensus       336 ~~~----~~~~~~~~~~~~~~~fs~~g~~l~~~~~~~~~~~~~~~  376 (379)
T 3jrp_A          336 AKL----IMKERRFTASYTFAKFSTGSMLLTKDIVGKSGVSIKRL  376 (379)
T ss_dssp             HHH----HHHHTTCCTTCCCEEEETTTEEEEECTTSSSSEEEEEC
T ss_pred             HHh----hhhhccccCcceeeEECCCCeEeeecccccccEEEEec
Confidence            110    00111123446677899999999888777667888764

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=3.5e-33  Score=296.22  Aligned_cols=274  Identities=18%  Similarity=0.275  Sum_probs=229.7

Q ss_pred             CeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeE--ecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCc
Q 005656           48 AIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLR--FRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ  125 (685)
Q Consensus        48 ~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~--~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~  125 (685)
                      .++.|+|+++ ++|++|. |++|+|||..++    ++..  ...+|...|++++|+|+|++|++|+.||+|++||+.+++
T Consensus       107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg----~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~  180 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSG----DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK  180 (420)
T ss_dssp             TCBCEEECTT-SEEEEEE-TTEEEEEETTTC----CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             cceeEEECCC-CEEEEEe-CCEEEEEECCCC----CEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc
Confidence            4677999976 4777765 999999998876    4333  446788899999999999999999999999999998887


Q ss_pred             eeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCe
Q 005656          126 QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAV  205 (685)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v  205 (685)
                      ....+.                                                                    .|...+
T Consensus       181 ~~~~~~--------------------------------------------------------------------~h~~~v  192 (420)
T 4gga_A          181 RLRNMT--------------------------------------------------------------------SHSARV  192 (420)
T ss_dssp             EEEEEC--------------------------------------------------------------------CCSSCE
T ss_pred             EEEEEe--------------------------------------------------------------------CCCCce
Confidence            665543                                                                    566677


Q ss_pred             EEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Q 005656          206 KACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD  285 (685)
Q Consensus       206 ~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~  285 (685)
                      .++++  ++..+++|+.++.+.+||..........       ..+|...+.++.++|++.++++++.||.+++|+..+++
T Consensus       193 ~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~-------~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~  263 (420)
T 4gga_A          193 GSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVAT-------LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE  263 (420)
T ss_dssp             EEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEE-------EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCS
T ss_pred             EEEee--CCCEEEEEeCCCceeEeeecccceeeEE-------ecccccceeeeeecCCCCeeeeeeccccceEEeecccc
Confidence            77665  5789999999999999999876544322       12899999999999999999999999999999998764


Q ss_pred             e-----EEEeecCCceeEEEEeecCC-EEEEE--eCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEe--C
Q 005656          286 L-----KSRWEVGCSLVKIVYHRVNG-LLATV--ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG--M  355 (685)
Q Consensus       286 ~-----~~~~~~~~~i~~~~~~~~~~-~l~~~--~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s--~  355 (685)
                      .     .....+...|.+++|+|.+. +++++  +.|++|++||+.+++++..+..| ..+.++.|+|+++.+++++  .
T Consensus       264 ~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~  342 (420)
T 4gga_A          264 GGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFA  342 (420)
T ss_dssp             SCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTT
T ss_pred             ccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecC
Confidence            2     22334558899999999766 55554  57999999999999999998855 5689999999999998775  7


Q ss_pred             CCcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656          356 DGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       356 Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~~  406 (685)
                      ||.|+|||+.+++++..+..|.. |++++|+|||++|++++.|+ .|+||+.
T Consensus       343 d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~-tvriWdv  393 (420)
T 4gga_A          343 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADE-TLRLWRC  393 (420)
T ss_dssp             TCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTT-EEEEECC
T ss_pred             CCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCC-eEEEEEC
Confidence            89999999999999999987655 99999999999999999997 9999974

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1e-34  Score=306.20  Aligned_cols=288  Identities=13%  Similarity=0.170  Sum_probs=237.0

Q ss_pred             EEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe----eeEEeecccccCeeEEEEeC-CCcEEEEecCCCcEEEEEecCCC
Q 005656            5 VTALAFSSDGQPLLASGASSGVISIWNLEKRR----LQSVIREAHDNAIISLHFFA-NEPVLMSASADNSIKMWIFDTTD   79 (685)
Q Consensus         5 V~~l~fspdg~~~latg~~dg~I~vwd~~~~~----~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~D~~v~iWd~~~~~   79 (685)
                      ...++++|+...++++|+.||.|+||++.+..    ....+. +|.+.|++++|+| ++.+|++|+.||+|++|++..+.
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~-~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~  115 (402)
T 2aq5_A           37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVC-GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG  115 (402)
T ss_dssp             SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBC-CCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred             CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEe-cCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence            34578888876566678899999999996642    234455 8999999999999 99999999999999999998763


Q ss_pred             CCC---ceeEecccCCCCCeEEEEecCC-CEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCcee
Q 005656           80 GDP---RLLRFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI  155 (685)
Q Consensus        80 ~~~---~~~~~~~~h~~~v~~i~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (685)
                      ...   ..+..+.+|...|.+++|+|++ ++|++++.||.|++||+.+++....+..                       
T Consensus       116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----------------------  172 (402)
T 2aq5_A          116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP-----------------------  172 (402)
T ss_dssp             CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT-----------------------
T ss_pred             CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec-----------------------
Confidence            211   3456677999999999999998 6999999999999999988765554410                       


Q ss_pred             eeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCc
Q 005656          156 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI  235 (685)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~  235 (685)
                                                                 ..+...|.+++|+|+|+++++|+.||.|++||++++.
T Consensus       173 -------------------------------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  209 (402)
T 2aq5_A          173 -------------------------------------------DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT  209 (402)
T ss_dssp             -------------------------------------------TTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE
T ss_pred             -------------------------------------------CCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCc
Confidence                                                       1567889999999999999999999999999999988


Q ss_pred             cccccccccccccCCCCcC-EEEEEEcCCCCEEEEE---ECCCeEEEEECCCCce---EEEeecCCceeEEEEeecCCEE
Q 005656          236 SRGSYLDMSERSNYAHNGE-VVGVACDSTNTLMISA---GYHGDIKVWDFKGRDL---KSRWEVGCSLVKIVYHRVNGLL  308 (685)
Q Consensus       236 ~~~~~~~~~~~~~~~h~~~-v~~l~~~~~~~~l~s~---s~dg~i~iwd~~~~~~---~~~~~~~~~i~~~~~~~~~~~l  308 (685)
                      ....+.       ..|.+. +.++.|+|+++++++|   +.|+.|++||+.++..   ...+.+...+.+++|+|+++++
T Consensus       210 ~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  282 (402)
T 2aq5_A          210 VVAEKD-------RPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIV  282 (402)
T ss_dssp             EEEEEE-------CSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEE
T ss_pred             eeeeec-------cCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEE
Confidence            776652       167665 8999999999999998   7899999999997654   3334456889999999999988


Q ss_pred             EE-EeCCCeEEEEEcCCCee-EEEEec--CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 005656          309 AT-VADDLVIRLFDVVALRM-VRKFEG--HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR  368 (685)
Q Consensus       309 ~~-~~~dg~I~i~d~~~~~~-~~~~~~--h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~  368 (685)
                      ++ |+.|+.|++||+.+++. +..+..  |...|++++|+|++.++++  .++.+++|++.++.
T Consensus       283 ~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~  344 (402)
T 2aq5_A          283 YLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERK  344 (402)
T ss_dssp             EEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTE
T ss_pred             EEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCc
Confidence            65 55799999999998874 555544  5589999999999998775  56799999998764

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=1.3e-32  Score=293.11  Aligned_cols=319  Identities=13%  Similarity=0.097  Sum_probs=261.1

Q ss_pred             cEEEEE---EccCCCCEEEEE--------------eCCC--cEEEEeCCCC--eeeEEeecccccCeeEEEEeCCCcEEE
Q 005656            4 AVTALA---FSSDGQPLLASG--------------ASSG--VISIWNLEKR--RLQSVIREAHDNAIISLHFFANEPVLM   62 (685)
Q Consensus         4 ~V~~l~---fspdg~~~latg--------------~~dg--~I~vwd~~~~--~~~~~~~~~h~~~V~~l~~sp~~~~l~   62 (685)
                      .+..++   |+|++. .+++.              +.++  .|..||..++  +.+..+.  +...+.+++|+|++.+++
T Consensus        62 g~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~~~  138 (433)
T 3bws_A           62 ALVEMAIPVYKDEKE-IELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFK--TGFQPKSVRFIDNTRLAI  138 (433)
T ss_dssp             EEEEEEEECCCTTCC-EEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEE--CSSCBCCCEESSSSEEEE
T ss_pred             ccEEEEEeeccCCCc-EEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEc--CCCCceEEEEeCCCeEEE
Confidence            467778   888877 44322              2233  4555555445  5555554  345567999999888889


Q ss_pred             EecCCCcEEEEEecCCCCCCceeE-----ecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHH
Q 005656           63 SASADNSIKMWIFDTTDGDPRLLR-----FRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAK  137 (685)
Q Consensus        63 s~s~D~~v~iWd~~~~~~~~~~~~-----~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~  137 (685)
                      +++.|+.|++||+.++    +...     ...+|...|.+++|+++++.+++++.|+.|++||+.+++....+.      
T Consensus       139 ~~~~~~~i~~~d~~~g----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~------  208 (433)
T 3bws_A          139 PLLEDEGMDVLDINSG----QTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVD------  208 (433)
T ss_dssp             EBTTSSSEEEEETTTC----CEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEE------
T ss_pred             EeCCCCeEEEEECCCC----eEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEc------
Confidence            9999999999998876    3444     345889999999999999999999999999999998776554442      


Q ss_pred             HHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEE
Q 005656          138 RARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFA  217 (685)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  217 (685)
                                                                                    .+...+.+++|+|+++++
T Consensus       209 --------------------------------------------------------------~~~~~~~~~~~~~~~~~l  226 (433)
T 3bws_A          209 --------------------------------------------------------------LTGKWSKILLYDPIRDLV  226 (433)
T ss_dssp             --------------------------------------------------------------CSSSSEEEEEEETTTTEE
T ss_pred             --------------------------------------------------------------CCCCCeeEEEEcCCCCEE
Confidence                                                                          446678999999999988


Q ss_pred             EEE-ecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE--------CCCeEEEEECCCCceEE
Q 005656          218 VLG-TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG--------YHGDIKVWDFKGRDLKS  288 (685)
Q Consensus       218 ~~g-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s--------~dg~i~iwd~~~~~~~~  288 (685)
                      +++ +.+|.|++||+.++.....+         .+...+.+++|+|+++++++++        .||.|++||+.+++...
T Consensus       227 ~~~~~~~~~i~~~d~~~~~~~~~~---------~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~  297 (433)
T 3bws_A          227 YCSNWISEDISVIDRKTKLEIRKT---------DKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLID  297 (433)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEC---------CCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEE
T ss_pred             EEEecCCCcEEEEECCCCcEEEEe---------cCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEe
Confidence            554 47999999999998776655         3345699999999999999888        48899999999999888


Q ss_pred             EeecCCceeEEEEeecCC-EEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeC------------
Q 005656          289 RWEVGCSLVKIVYHRVNG-LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM------------  355 (685)
Q Consensus       289 ~~~~~~~i~~~~~~~~~~-~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~------------  355 (685)
                      .+.+...+.+++|+|+++ ++++++.|+.|++||+.+++.+..+. +...+.+++|+|+|++|++++.            
T Consensus       298 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~  376 (433)
T 3bws_A          298 TIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKK  376 (433)
T ss_dssp             EEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSC
T ss_pred             eccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccc
Confidence            887777899999999997 45666889999999999999888886 7788999999999999988876            


Q ss_pred             ---CCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          356 ---DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       356 ---Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                         ||.|++||+.+++.+..+..+..+.+++|+|+|++|++++.+++.|++|+..
T Consensus       377 g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          377 GLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             CSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             cccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence               5799999999999999998887899999999999999988633499999864

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=8.4e-33  Score=281.32  Aligned_cols=274  Identities=17%  Similarity=0.260  Sum_probs=226.6

Q ss_pred             eeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeE--ecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCce
Q 005656           49 IISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLR--FRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ  126 (685)
Q Consensus        49 V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~--~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~  126 (685)
                      .++|+||+++ +|++| .|++|+|||+.++    +++.  ...+|...|++++|+|++++|++|+.||+|++|++.+++.
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg----~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~  101 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSG----DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR  101 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTC----CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCC----CEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee
Confidence            5789999986 77765 5999999998876    4444  3457888999999999999999999999999999988876


Q ss_pred             eeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeE
Q 005656          127 SRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVK  206 (685)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~  206 (685)
                      ...+.                                                                    .|...+.
T Consensus       102 ~~~~~--------------------------------------------------------------------~h~~~~~  113 (318)
T 4ggc_A          102 LRNMT--------------------------------------------------------------------SHSARVG  113 (318)
T ss_dssp             EEEEE--------------------------------------------------------------------CCSSCEE
T ss_pred             EEEec--------------------------------------------------------------------CccceEE
Confidence            65543                                                                    4444444


Q ss_pred             EEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCce
Q 005656          207 ACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDL  286 (685)
Q Consensus       207 ~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~  286 (685)
                      +  +++++..+++|+.++.+.+|+...+.......       .+|...+..+.+.++++++++++.||.|++||+.+++.
T Consensus       114 ~--~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  184 (318)
T 4ggc_A          114 S--LSWNSYILSSGSRSGHIHHHDVRVAEHHVATL-------SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG  184 (318)
T ss_dssp             E--EEEETTEEEEEETTSEEEEEETTSSSCEEEEE-------ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTT
T ss_pred             E--eecCCCEEEEEecCCceEeeecCCCceeEEEE-------cCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcc
Confidence            4  55567899999999999999998775543322       28999999999999999999999999999999987653


Q ss_pred             E-----EEeecCCceeEEEEeecCC---EEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEe--CC
Q 005656          287 K-----SRWEVGCSLVKIVYHRVNG---LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG--MD  356 (685)
Q Consensus       287 ~-----~~~~~~~~i~~~~~~~~~~---~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s--~D  356 (685)
                      .     ....+...+..+.++|++.   .+++++.++.|++||........... |...+..+.|+|+++.+++++  .|
T Consensus       185 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d  263 (318)
T 4ggc_A          185 GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQ  263 (318)
T ss_dssp             BSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTT
T ss_pred             cccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCC
Confidence            2     2233457899999999876   33456778999999999888776655 777899999999999888765  79


Q ss_pred             CcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          357 GSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       357 g~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                      +.|++||+.+++++..+..|.. |++++|+|+|++||+++.|+ .|+||+..
T Consensus       264 ~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~-~v~iWd~~  314 (318)
T 4ggc_A          264 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADE-TLRLWRCF  314 (318)
T ss_dssp             CCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTT-EEEEECCS
T ss_pred             CEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCC-eEEEEECC
Confidence            9999999999999999987655 99999999999999999997 99999853

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.5e-34  Score=294.08  Aligned_cols=248  Identities=18%  Similarity=0.241  Sum_probs=196.8

Q ss_pred             eecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEec--CCCEEEEEeCCCceEE
Q 005656           41 IREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA--NGRHILSAGQDRAFRL  118 (685)
Q Consensus        41 ~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~--~~~~l~s~s~dg~i~v  118 (685)
                      +..+|.+.|++++|+|+|++|++|+.|++|++||+..+.  ...+..+.+|..+|.+++|++  ++++|++|+.|++|++
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~--~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i   85 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGG--QILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII   85 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTE--EEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCC--cEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence            334899999999999999999999999999999997652  134667789999999999986  4889999999999999


Q ss_pred             EEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCC
Q 005656          119 FSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC  198 (685)
Q Consensus       119 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  198 (685)
                      ||+.++......                                                                    
T Consensus        86 Wd~~~~~~~~~~--------------------------------------------------------------------   97 (316)
T 3bg1_A           86 WREENGTWEKSH--------------------------------------------------------------------   97 (316)
T ss_dssp             ECCSSSCCCEEE--------------------------------------------------------------------
T ss_pred             EECCCCcceEEE--------------------------------------------------------------------
Confidence            998543210000                                                                    


Q ss_pred             CCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCC--CCEEEEEECCCeE
Q 005656          199 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST--NTLMISAGYHGDI  276 (685)
Q Consensus       199 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~s~dg~i  276 (685)
                                                                      ...+|...|.+++|+|+  +.+|++++.||+|
T Consensus        98 ------------------------------------------------~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i  129 (316)
T 3bg1_A           98 ------------------------------------------------EHAGHDSSVNSVCWAPHDYGLILACGSSDGAI  129 (316)
T ss_dssp             ------------------------------------------------EECCCSSCCCEEEECCTTTCSCEEEECSSSCE
T ss_pred             ------------------------------------------------EccCCCCceEEEEECCCCCCcEEEEEcCCCCE
Confidence                                                            00178888999999987  7789999999999


Q ss_pred             EEEECCCCceE---EEe-ecCCceeEEEEeec-----------------CCEEEEEeCCCeEEEEEcCCC---eeEEEEe
Q 005656          277 KVWDFKGRDLK---SRW-EVGCSLVKIVYHRV-----------------NGLLATVADDLVIRLFDVVAL---RMVRKFE  332 (685)
Q Consensus       277 ~iwd~~~~~~~---~~~-~~~~~i~~~~~~~~-----------------~~~l~~~~~dg~I~i~d~~~~---~~~~~~~  332 (685)
                      ++||+..+...   ..+ .+...+.+++|+|+                 +++|++|+.|+.|++||+...   +.+..+.
T Consensus       130 ~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~  209 (316)
T 3bg1_A          130 SLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE  209 (316)
T ss_dssp             EEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB
T ss_pred             EEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc
Confidence            99998865321   222 23367888999987                 468999999999999999765   5677889


Q ss_pred             cCCCCeEEEEEcCCC----CEEEEEeCCCcEEEEEcCCCc----eeeEEe-eccceEEEEEcCCCCeEEEEEeCCCeEEE
Q 005656          333 GHTDRITDFCFSEDG----KWLLSSGMDGSLRIWDVILAR----QIDAIH-VDVSITALSLSPNMDVLATAHVDQNGVYL  403 (685)
Q Consensus       333 ~h~~~I~~l~~spdg----~~l~s~s~Dg~I~iwd~~~~~----~i~~~~-~~~~v~~v~~spdg~~Lat~~~d~~~I~l  403 (685)
                      +|...|++++|+|++    ++|++++.||+|++|++.+..    ....+. +...|.+++|+|+|++||+++.|+ .|++
T Consensus       210 ~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~-~v~l  288 (316)
T 3bg1_A          210 AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDN-KVTL  288 (316)
T ss_dssp             CCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSS-CEEE
T ss_pred             cCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCC-eEEE
Confidence            999999999999986    899999999999999998631    122333 345699999999999999999997 9999


Q ss_pred             EEcC
Q 005656          404 WVNR  407 (685)
Q Consensus       404 W~~~  407 (685)
                      |+..
T Consensus       289 w~~~  292 (316)
T 3bg1_A          289 WKES  292 (316)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9853

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=3.1e-33  Score=298.11  Aligned_cols=273  Identities=21%  Similarity=0.354  Sum_probs=235.6

Q ss_pred             ccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeec
Q 005656           44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ  123 (685)
Q Consensus        44 ~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~  123 (685)
                      +|...|.++.|  ++++|++|+.||+|++||+.++    +....+.+|..+|.+++|  ++++|++|+.||+|++||+.+
T Consensus       131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~  202 (435)
T 1p22_A          131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTL----ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT  202 (435)
T ss_dssp             SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSC----CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred             CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCC----eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC
Confidence            56778998887  7899999999999999998876    677888899999999999  788999999999999999988


Q ss_pred             CceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCC
Q 005656          124 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT  203 (685)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  203 (685)
                      ++....+.                                                                    .+..
T Consensus       203 ~~~~~~~~--------------------------------------------------------------------~h~~  214 (435)
T 1p22_A          203 GEMLNTLI--------------------------------------------------------------------HHCE  214 (435)
T ss_dssp             CCEEEEEC--------------------------------------------------------------------CCCS
T ss_pred             CcEEEEEc--------------------------------------------------------------------CCCC
Confidence            77655442                                                                    5677


Q ss_pred             CeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005656          204 AVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG  283 (685)
Q Consensus       204 ~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~  283 (685)
                      .|.+++++  ++.+++|+.||.|++||+.++.......     ...+|...|.++++  +++++++++.||.|++||+.+
T Consensus       215 ~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~-----~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~  285 (435)
T 1p22_A          215 AVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRR-----VLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTST  285 (435)
T ss_dssp             CEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEE-----EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTT
T ss_pred             cEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeee-----EecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCc
Confidence            89999986  4699999999999999999876552111     22389999999999  678999999999999999999


Q ss_pred             CceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005656          284 RDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIW  362 (685)
Q Consensus       284 ~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iw  362 (685)
                      ++.+..+..+ ..+.++.+  +++++++|+.||.|++||+.+++++..+.+|...|++++|  ++++|++|+.||.|++|
T Consensus       286 ~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vw  361 (435)
T 1p22_A          286 CEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVW  361 (435)
T ss_dssp             CCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEE
T ss_pred             CcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEE
Confidence            9998888754 78888888  4789999999999999999999999999999999999999  78999999999999999


Q ss_pred             EcCCCc---------eeeEEeecc-ceEEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656          363 DVILAR---------QIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWVNRC  408 (685)
Q Consensus       363 d~~~~~---------~i~~~~~~~-~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~  408 (685)
                      |+.++.         ++..+..+. .|++++|  ++.+|++++.|+ .|++|+...
T Consensus       362 d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg-~i~iwd~~~  414 (435)
T 1p22_A          362 DLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDD-TILIWDFLN  414 (435)
T ss_dssp             EHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSS-EEEEEC---
T ss_pred             ECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCC-EEEEEECCC
Confidence            998776         677776554 4999999  789999999897 999998543

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=7.3e-33  Score=285.07  Aligned_cols=305  Identities=15%  Similarity=0.110  Sum_probs=221.9

Q ss_pred             cccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEec--CCCEEEEEeCCCceEEEE
Q 005656           43 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA--NGRHILSAGQDRAFRLFS  120 (685)
Q Consensus        43 ~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~--~~~~l~s~s~dg~i~vwd  120 (685)
                      .+|.+.|++++|+|++++|++++.||.|++|++.......+....+.+|..+|++++|+|  ++++|++++.||.|++||
T Consensus         8 ~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd   87 (351)
T 3f3f_A            8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE   87 (351)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred             cccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEe
Confidence            399999999999999999999999999999999887666567778889999999999999  699999999999999999


Q ss_pred             eecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCC
Q 005656          121 VIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE  200 (685)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  200 (685)
                      +.++.......                                                           ..........
T Consensus        88 ~~~~~~~~~~~-----------------------------------------------------------~~~~~~~~~~  108 (351)
T 3f3f_A           88 EDPDQEECSGR-----------------------------------------------------------RWNKLCTLND  108 (351)
T ss_dssp             ECTTSCTTSSC-----------------------------------------------------------SEEEEEEECC
T ss_pred             cCCCccccccc-----------------------------------------------------------Ccceeeeecc
Confidence            98764211000                                                           0000001115


Q ss_pred             CCCCeEEEEEccC--CCEEEEEecCCcEEEEECCCCcccccccccc-----ccccCCCCcCEEEEEEcCC---CCEEEEE
Q 005656          201 NPTAVKACTISAC--GNFAVLGTAGGWIERFNLQSGISRGSYLDMS-----ERSNYAHNGEVVGVACDST---NTLMISA  270 (685)
Q Consensus       201 ~~~~v~~~~~s~~--g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~-----~~~~~~h~~~v~~l~~~~~---~~~l~s~  270 (685)
                      +...+.+++|+|+  ++++++++.||.|++||+.++.....+....     ......|...+.+++|+|+   +..++++
T Consensus       109 ~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~  188 (351)
T 3f3f_A          109 SKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVS  188 (351)
T ss_dssp             CSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEE
T ss_pred             cCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEe
Confidence            6788999999999  9999999999999999999887665542110     1112368889999999997   8999999


Q ss_pred             ECCCeEEEEECCCCce--EEEee-cCCceeEEEEeecC----CEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEE
Q 005656          271 GYHGDIKVWDFKGRDL--KSRWE-VGCSLVKIVYHRVN----GLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCF  343 (685)
Q Consensus       271 s~dg~i~iwd~~~~~~--~~~~~-~~~~i~~~~~~~~~----~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~  343 (685)
                      +.|+.+.+|+...+..  ...+. +...|.+++|+|++    ++|++|+.||.|++||+.++........+...+....+
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  268 (351)
T 3f3f_A          189 ALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDN  268 (351)
T ss_dssp             ETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------------
T ss_pred             cCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCC
Confidence            9999999998887765  44443 34889999999998    89999999999999999987665555545555555555


Q ss_pred             cCCCCEEEEEe----CCCcEEEEEcCCCceeeEEeecc-ceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          344 SEDGKWLLSSG----MDGSLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       344 spdg~~l~s~s----~Dg~I~iwd~~~~~~i~~~~~~~-~v~~v~~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                      ++....++.+.    ....+.+|+....+.+..+..|. .|++++|+|++++|++++.|+ .|++|+..
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg-~v~iw~~~  336 (351)
T 3f3f_A          269 SADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDG-KVRLWKAT  336 (351)
T ss_dssp             ----------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTS-CEEEEEEC
T ss_pred             CcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCC-cEEEEecC
Confidence            55555554443    34556777777777888887654 499999999999999999997 99999864

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.1e-33  Score=288.73  Aligned_cols=260  Identities=16%  Similarity=0.222  Sum_probs=215.0

Q ss_pred             eeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecC--CCEEEEEeCC
Q 005656           36 RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--GRHILSAGQD  113 (685)
Q Consensus        36 ~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~--~~~l~s~s~d  113 (685)
                      +++..+. +|.+.|++++|+|++++|++++.||.|++|++....  .+.+..+.+|..+|++++|+++  +++|++++.|
T Consensus         2 ~~~~~~~-~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d   78 (379)
T 3jrp_A            2 SMVVIAN-AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET--HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD   78 (379)
T ss_dssp             ---CCEE-ECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             CccEEec-CCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc--ceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC
Confidence            4556666 999999999999999999999999999999997432  2667778899999999999977  8999999999


Q ss_pred             CceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCce
Q 005656          114 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH  193 (685)
Q Consensus       114 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  193 (685)
                      |.|++||+.+++......                                                              
T Consensus        79 g~v~iwd~~~~~~~~~~~--------------------------------------------------------------   96 (379)
T 3jrp_A           79 GKVLIWKEENGRWSQIAV--------------------------------------------------------------   96 (379)
T ss_dssp             SCEEEEEEETTEEEEEEE--------------------------------------------------------------
T ss_pred             CEEEEEEcCCCceeEeee--------------------------------------------------------------
Confidence            999999998775211110                                                              


Q ss_pred             eecCCCCCCCCeEEEEEccC--CCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcC---------
Q 005656          194 ILRPCPENPTAVKACTISAC--GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS---------  262 (685)
Q Consensus       194 ~~~~~~~~~~~v~~~~~s~~--g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---------  262 (685)
                          ...+...+.+++|+|+  ++++++++.||.|++||+.++......      ....|...|.+++|+|         
T Consensus        97 ----~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~~~~~  166 (379)
T 3jrp_A           97 ----HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI------IIDAHAIGVNSASWAPATIEEDGEH  166 (379)
T ss_dssp             ----ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEE------EEECCTTCEEEEEECCCC-------
T ss_pred             ----ecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeE------EecCCCCceEEEEEcCccccccccc
Confidence                0156788999999999  999999999999999999987543322      1238999999999999         


Q ss_pred             ----CCCEEEEEECCCeEEEEECCCCc----eEEEee-cCCceeEEEEeec---CCEEEEEeCCCeEEEEEcCCCe---e
Q 005656          263 ----TNTLMISAGYHGDIKVWDFKGRD----LKSRWE-VGCSLVKIVYHRV---NGLLATVADDLVIRLFDVVALR---M  327 (685)
Q Consensus       263 ----~~~~l~s~s~dg~i~iwd~~~~~----~~~~~~-~~~~i~~~~~~~~---~~~l~~~~~dg~I~i~d~~~~~---~  327 (685)
                          ++.++++++.||.|++||++++.    ....+. +...|.+++|+|+   +++|++++.||.|++||+.++.   .
T Consensus       167 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  246 (379)
T 3jrp_A          167 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK  246 (379)
T ss_dssp             ---CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCE
T ss_pred             cCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccce
Confidence                68999999999999999998764    233343 3588999999999   8999999999999999999863   2


Q ss_pred             EEE--EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcee
Q 005656          328 VRK--FEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI  370 (685)
Q Consensus       328 ~~~--~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i  370 (685)
                      ...  ...|...|++++|+|+|++|++++.||.|++|++..+...
T Consensus       247 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~  291 (379)
T 3jrp_A          247 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW  291 (379)
T ss_dssp             EEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEE
T ss_pred             eeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCcc
Confidence            222  2348889999999999999999999999999999865443

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.1e-33  Score=296.23  Aligned_cols=285  Identities=14%  Similarity=0.178  Sum_probs=231.5

Q ss_pred             CCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe---eeEEeec-----------------------------------
Q 005656            2 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR---LQSVIRE-----------------------------------   43 (685)
Q Consensus         2 ~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~---~~~~~~~-----------------------------------   43 (685)
                      ..+|++++|+|||+ +|+++ .++.|++||+.+++   .+..+..                                   
T Consensus         4 ~~p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (450)
T 2vdu_B            4 IHPLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG   81 (450)
T ss_dssp             ECCCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred             cccEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence            46899999999999 77666 47899999999888   5555441                                   


Q ss_pred             ------------------ccccCeeEEEEeCCCcEE-EEecCCCcEEEEEec--CCCCCCceeEecc--cCCCCCeEEEE
Q 005656           44 ------------------AHDNAIISLHFFANEPVL-MSASADNSIKMWIFD--TTDGDPRLLRFRS--GHSAPPLCIRF  100 (685)
Q Consensus        44 ------------------~h~~~V~~l~~sp~~~~l-~s~s~D~~v~iWd~~--~~~~~~~~~~~~~--~h~~~v~~i~~  100 (685)
                                        +|.+.|++++|+|++++| ++++.||+|++|++.  .+    ..+..+.  .|...|.+++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~----~~~~~~~~~~~~~~v~~~~~  157 (450)
T 2vdu_B           82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK----NVLKLRKRFCFSKRPNAISI  157 (450)
T ss_dssp             ------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS----SCEEEEEEEECSSCEEEEEE
T ss_pred             ccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC----ceeeeeecccCCCCceEEEE
Confidence                              234479999999999986 899999999999998  44    3444443  67789999999


Q ss_pred             ecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceE
Q 005656          101 YANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQA  180 (685)
Q Consensus       101 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (685)
                      +|++++|++++.||.+++|++.++......                                                  
T Consensus       158 sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~--------------------------------------------------  187 (450)
T 2vdu_B          158 AEDDTTVIIADKFGDVYSIDINSIPEEKFT--------------------------------------------------  187 (450)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTSCCCSSCC--------------------------------------------------
T ss_pred             cCCCCEEEEEeCCCcEEEEecCCccccccc--------------------------------------------------
Confidence            999999999999999999998765432100                                                  


Q ss_pred             EEEEcCccccCceeecCCCCCCCCeEEEEEccC---CCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEE
Q 005656          181 YVWRLQNFVLGEHILRPCPENPTAVKACTISAC---GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVG  257 (685)
Q Consensus       181 ~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~  257 (685)
                                    ......+...|.+++|+|+   ++++++|+.|+.|++||+.++.....+.       .+|...|.+
T Consensus       188 --------------~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-------~~h~~~v~~  246 (450)
T 2vdu_B          188 --------------QEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWL-------FGHKHFVSS  246 (450)
T ss_dssp             --------------CCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEEC-------CCCSSCEEE
T ss_pred             --------------ceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeee-------cCCCCceEE
Confidence                          0011156788999999999   9999999999999999999887766532       289999999


Q ss_pred             EEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec--------------------------CCceeEEEEeecCCEEEEE
Q 005656          258 VACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV--------------------------GCSLVKIVYHRVNGLLATV  311 (685)
Q Consensus       258 l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--------------------------~~~i~~~~~~~~~~~l~~~  311 (685)
                      ++|+ ++++|++++.|+.|++||+.+++.+..+..                          ...+..++|+|++++++++
T Consensus       247 ~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~  325 (450)
T 2vdu_B          247 ICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFF  325 (450)
T ss_dssp             EEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEE
T ss_pred             EEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEE
Confidence            9999 999999999999999999999998877753                          2468899999999999999


Q ss_pred             e-CCCeEEEEEc--CCC---eeEEEEecCCCCeEEEEEcCCCCEEEEEeC------CCcEEEEEcC
Q 005656          312 A-DDLVIRLFDV--VAL---RMVRKFEGHTDRITDFCFSEDGKWLLSSGM------DGSLRIWDVI  365 (685)
Q Consensus       312 ~-~dg~I~i~d~--~~~---~~~~~~~~h~~~I~~l~~spdg~~l~s~s~------Dg~I~iwd~~  365 (685)
                      + .|+.|++|++  .++   +.+..+.+| +.|.+++|+|++.++++++.      +..|.+|.+.
T Consensus       326 ~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~  390 (450)
T 2vdu_B          326 VEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN  390 (450)
T ss_dssp             ETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred             ECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence            9 8999999999  666   778888888 88999999996544433333      4457888764

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=2.2e-31  Score=279.57  Aligned_cols=277  Identities=10%  Similarity=0.094  Sum_probs=234.2

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEE-EEecCCCcEEEEEecCCCCCCceeEecccCCCC
Q 005656           16 PLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL-MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP   94 (685)
Q Consensus        16 ~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l-~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~   94 (685)
                      .++++++.|+.|++||+.+++....+. .| ..+.+++|+|+++++ ++++.|++|++||+.++    +.+..+..+. .
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~-~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~----~~~~~~~~~~-~   75 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIP-VG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATN----NVIATVPAGS-S   75 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEE-CS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT----EEEEEEECSS-S
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEee-cC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCC----eEEEEEECCC-C
Confidence            378899999999999999999998887 55 458999999999976 67778999999998776    5666655444 8


Q ss_pred             CeEEEEecCCCEEEEEe-CCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEE
Q 005656           95 PLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTC  173 (685)
Q Consensus        95 v~~i~~~~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (685)
                      +.+++|+|++++|+.++ .++.|++||+.+++....+.                                          
T Consensus        76 v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~------------------------------------------  113 (391)
T 1l0q_A           76 PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK------------------------------------------  113 (391)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE------------------------------------------
T ss_pred             ccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe------------------------------------------
Confidence            99999999999886555 67999999998776544431                                          


Q ss_pred             EcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEE-EEEecCCcEEEEECCCCccccccccccccccCCCC
Q 005656          174 HMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFA-VLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHN  252 (685)
Q Consensus       174 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~  252 (685)
                                                 ....+.+++|+|+|+++ ++++.++.|++||+.+++....+.         +.
T Consensus       114 ---------------------------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~---------~~  157 (391)
T 1l0q_A          114 ---------------------------TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS---------VG  157 (391)
T ss_dssp             ---------------------------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE---------CC
T ss_pred             ---------------------------CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEe---------cC
Confidence                                       23457899999999988 677889999999999988776652         33


Q ss_pred             cCEEEEEEcCCCCEE-EEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEe---CCCeEEEEEcCCCeeE
Q 005656          253 GEVVGVACDSTNTLM-ISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVA---DDLVIRLFDVVALRMV  328 (685)
Q Consensus       253 ~~v~~l~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~I~i~d~~~~~~~  328 (685)
                      ..+.+++|+|+++.+ ++++.++.|++||+.+++....+..+..+.+++|+|+++++++++   .++.|++||+.+++.+
T Consensus       158 ~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~  237 (391)
T 1l0q_A          158 RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT  237 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE
T ss_pred             CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE
Confidence            567999999999887 566788999999999999998888888999999999999988888   6899999999999999


Q ss_pred             EEEecCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCceeeEEeeccc
Q 005656          329 RKFEGHTDRITDFCFSEDGKWL-LSSGMDGSLRIWDVILARQIDAIHVDVS  378 (685)
Q Consensus       329 ~~~~~h~~~I~~l~~spdg~~l-~s~s~Dg~I~iwd~~~~~~i~~~~~~~~  378 (685)
                      ..+..|. .+.+++|+|+|++| ++++.|+.|++||+.+++.+..+..+..
T Consensus       238 ~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~  287 (391)
T 1l0q_A          238 ARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKN  287 (391)
T ss_dssp             EEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred             EEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcC
Confidence            9998765 57899999999987 5678899999999999999888875543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=2.8e-33  Score=295.22  Aligned_cols=290  Identities=13%  Similarity=0.111  Sum_probs=233.1

Q ss_pred             CeeEEEEeCCCcEE-EEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEec-CCCEEEEEeCCCceEEEEeecCc
Q 005656           48 AIISLHFFANEPVL-MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQ  125 (685)
Q Consensus        48 ~V~~l~~sp~~~~l-~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~s~dg~i~vwd~~~~~  125 (685)
                      ....++++|+...+ ++++.||.|++|+++........+..+.+|..+|++++|+| ++++|++|+.||+|++|++.++.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~  115 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG  115 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence            44568899887644 45788999999998665333344556779999999999999 89999999999999999998764


Q ss_pred             eeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCe
Q 005656          126 QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAV  205 (685)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v  205 (685)
                      .......                                                             .......|...|
T Consensus       116 ~~~~~~~-------------------------------------------------------------~~~~~~~h~~~v  134 (402)
T 2aq5_A          116 LVLPLRE-------------------------------------------------------------PVITLEGHTKRV  134 (402)
T ss_dssp             CSSCBCS-------------------------------------------------------------CSEEEECCSSCE
T ss_pred             CccccCC-------------------------------------------------------------ceEEecCCCCeE
Confidence            3211100                                                             000011678899


Q ss_pred             EEEEEccCC-CEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 005656          206 KACTISACG-NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR  284 (685)
Q Consensus       206 ~~~~~s~~g-~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~  284 (685)
                      .+++|+|++ +++++|+.||.|++||+.++.....+.      ...|...|.+++|+|++.+|++++.||.|++||++++
T Consensus       135 ~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  208 (402)
T 2aq5_A          135 GIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG------PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG  208 (402)
T ss_dssp             EEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC------TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTT
T ss_pred             EEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe------cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCC
Confidence            999999998 799999999999999999998776651      0279999999999999999999999999999999999


Q ss_pred             ceEEEe-ecC-C-ceeEEEEeecCCEEEEE---eCCCeEEEEEcCCCee-EEEEe-cCCCCeEEEEEcCCCCEEEE-EeC
Q 005656          285 DLKSRW-EVG-C-SLVKIVYHRVNGLLATV---ADDLVIRLFDVVALRM-VRKFE-GHTDRITDFCFSEDGKWLLS-SGM  355 (685)
Q Consensus       285 ~~~~~~-~~~-~-~i~~~~~~~~~~~l~~~---~~dg~I~i~d~~~~~~-~~~~~-~h~~~I~~l~~spdg~~l~s-~s~  355 (685)
                      +.+..+ ..+ . .+.++.|+|++.++++|   +.|+.|++||+.+++. +.... .|...|.+++|+|++++|++ ++.
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~  288 (402)
T 2aq5_A          209 TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKG  288 (402)
T ss_dssp             EEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETT
T ss_pred             ceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcC
Confidence            988887 333 3 38999999999999999   7899999999998754 33333 57788999999999999975 557


Q ss_pred             CCcEEEEEcCCCce-eeEEe---eccceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          356 DGSLRIWDVILARQ-IDAIH---VDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       356 Dg~I~iwd~~~~~~-i~~~~---~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                      ||.|++||+.+++. +..+.   +..+|++++|+|++.+++++  ++ .+++|+..
T Consensus       289 dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~--~~-~~~~~~l~  341 (402)
T 2aq5_A          289 DSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNK--CE-IARFYKLH  341 (402)
T ss_dssp             CSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGG--TE-EEEEEEEE
T ss_pred             CCeEEEEEecCCCcceEeecccccCCcccceEEecccccceec--ce-eEEEEEcC
Confidence            99999999999884 44443   34669999999999998763  54 89999854

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.6e-32  Score=288.25  Aligned_cols=287  Identities=11%  Similarity=0.057  Sum_probs=230.6

Q ss_pred             ccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEec-------------------------------------
Q 005656           46 DNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFR-------------------------------------   88 (685)
Q Consensus        46 ~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~-------------------------------------   88 (685)
                      ..++.+++|+|+|++|+++ .++.|++||+.++... ..+..+                                     
T Consensus         4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHW-EFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG   81 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEE-EEEEEEECCC---------------------------------
T ss_pred             cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcc-eeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence            4588999999999977666 5789999998876400 022111                                     


Q ss_pred             -----------------ccCCCCCeEEEEecCCCEE-EEEeCCCceEEEEee--cCceeeEechhhHHHHHhhccccccc
Q 005656           89 -----------------SGHSAPPLCIRFYANGRHI-LSAGQDRAFRLFSVI--QDQQSRELSQRHVAKRARKLKMKEEE  148 (685)
Q Consensus        89 -----------------~~h~~~v~~i~~~~~~~~l-~s~s~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (685)
                                       .+|...|.+++|+|++++| ++++.||.|++||+.  ++.....+...               
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~---------------  146 (450)
T 2vdu_B           82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF---------------  146 (450)
T ss_dssp             ------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE---------------
T ss_pred             ccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecc---------------
Confidence                             2455579999999999996 889999999999998  66554443210               


Q ss_pred             cccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEE
Q 005656          149 LKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIER  228 (685)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~  228 (685)
                                                                         .+...+.+++|+|+|+++++|+.+|.|++
T Consensus       147 ---------------------------------------------------~~~~~v~~~~~sp~~~~l~~~~~~g~v~~  175 (450)
T 2vdu_B          147 ---------------------------------------------------CFSKRPNAISIAEDDTTVIIADKFGDVYS  175 (450)
T ss_dssp             ---------------------------------------------------ECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             ---------------------------------------------------cCCCCceEEEEcCCCCEEEEEeCCCcEEE
Confidence                                                               34577999999999999999999999999


Q ss_pred             EECCCCcccc-ccccccccccCCCCcCEEEEEEcCC---CCEEEEEECCCeEEEEECCCCceEEEe--ecCCceeEEEEe
Q 005656          229 FNLQSGISRG-SYLDMSERSNYAHNGEVVGVACDST---NTLMISAGYHGDIKVWDFKGRDLKSRW--EVGCSLVKIVYH  302 (685)
Q Consensus       229 ~d~~~~~~~~-~~~~~~~~~~~~h~~~v~~l~~~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~i~~~~~~  302 (685)
                      |++.++.... ...     ...+|...|.+++|+|+   +++|++++.|+.|++||+.+++.+..+  .+...|.+++|+
T Consensus       176 ~~~~~~~~~~~~~~-----~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s  250 (450)
T 2vdu_B          176 IDINSIPEEKFTQE-----PILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG  250 (450)
T ss_dssp             EETTSCCCSSCCCC-----CSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC
T ss_pred             EecCCcccccccce-----eeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC
Confidence            9998877654 110     12279999999999999   999999999999999999998877663  355899999999


Q ss_pred             ecCCEEEEEeCCCeEEEEEcCCCeeEEEEec-------------------------CCCCeEEEEEcCCCCEEEEEe-CC
Q 005656          303 RVNGLLATVADDLVIRLFDVVALRMVRKFEG-------------------------HTDRITDFCFSEDGKWLLSSG-MD  356 (685)
Q Consensus       303 ~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~-------------------------h~~~I~~l~~spdg~~l~s~s-~D  356 (685)
                       ++++|++++.|+.|++||+.+++++..+..                         +...|.+++|+|++++|++++ .|
T Consensus       251 -d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d  329 (450)
T 2vdu_B          251 -KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEAT  329 (450)
T ss_dssp             -STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTC
T ss_pred             -CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCC
Confidence             999999999999999999999999888873                         235699999999999999998 89


Q ss_pred             CcEEEEEc--CCC---ceeeEEeeccceEEEEEcCCCCeEEEEEeC-----CCeEEEEEc
Q 005656          357 GSLRIWDV--ILA---RQIDAIHVDVSITALSLSPNMDVLATAHVD-----QNGVYLWVN  406 (685)
Q Consensus       357 g~I~iwd~--~~~---~~i~~~~~~~~v~~v~~spdg~~Lat~~~d-----~~~I~lW~~  406 (685)
                      +.|++|++  .++   ..+..+..+..|.+++|+|++.++++++.+     .+.|.+|..
T Consensus       330 ~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~  389 (450)
T 2vdu_B          330 KCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEY  389 (450)
T ss_dssp             SEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEE
T ss_pred             CeEEEEEeccCCCCceeeccEeccCCceEEEEecCCcEEEEEecccCCCCCCcceEEEEE
Confidence            99999999  666   677778878789999999965444444432     235888864

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=7.7e-32  Score=278.73  Aligned_cols=285  Identities=12%  Similarity=0.139  Sum_probs=209.5

Q ss_pred             EEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEE-
Q 005656           29 IWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHI-  107 (685)
Q Consensus        29 vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l-  107 (685)
                      ||++.+++.+.... +|.+.|++++|+|||++|++|+.|+ +++|+.+..    ......  +...+..+.+.++++.+ 
T Consensus         3 i~s~~~~~~~~~~~-~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~   74 (355)
T 3vu4_A            3 LGSMITRNPIVPEN-HVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPV----AHIMSQ--EMRHLSKVRMLHRTNYVA   74 (355)
T ss_dssp             -----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTE----EEEEEE--ECSCCCEEEECTTSSEEE
T ss_pred             cccccccCCccccc-cCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCc----ceeeee--ecCCeEEEEEcCCCCEEE
Confidence            56777777776666 8999999999999999999998774 789998764    333222  22358889999988877 


Q ss_pred             EEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCc
Q 005656          108 LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN  187 (685)
Q Consensus       108 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  187 (685)
                      ++++.|++|++||+.+++....+                                                         
T Consensus        75 ~~~~~d~~v~iWd~~~~~~~~~~---------------------------------------------------------   97 (355)
T 3vu4_A           75 FVTGVKEVVHIWDDVKKQDVSRI---------------------------------------------------------   97 (355)
T ss_dssp             EECSSTTEEEEEETTTTEEEEEE---------------------------------------------------------
T ss_pred             EEECCccEEEEEECCCCcEEEEE---------------------------------------------------------
Confidence            56778899999999888765544                                                         


Q ss_pred             cccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCC-ccccccccccccccCCCCcCEEEEEEcCCCCE
Q 005656          188 FVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG-ISRGSYLDMSERSNYAHNGEVVGVACDSTNTL  266 (685)
Q Consensus       188 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~-~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  266 (685)
                                  .+...|.++++++++  ++++ .++.|++||+.++ .....+.        .   ....+++++  .+
T Consensus        98 ------------~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~--------~---~~~~~~~s~--~~  149 (355)
T 3vu4_A           98 ------------KVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDI--------R---FGGVCEFSN--GL  149 (355)
T ss_dssp             ------------ECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCE--------E---EEEEEEEET--TE
T ss_pred             ------------ECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEec--------c---CCceEEEEc--cE
Confidence                        234578899998764  3333 4789999999988 5554442        1   334455666  56


Q ss_pred             EEE--EECCCeEEEEECCCCc---------------e-EEEee-cCCceeEEEEeecCCEEEEEeCCCe-EEEEEcCCCe
Q 005656          267 MIS--AGYHGDIKVWDFKGRD---------------L-KSRWE-VGCSLVKIVYHRVNGLLATVADDLV-IRLFDVVALR  326 (685)
Q Consensus       267 l~s--~s~dg~i~iwd~~~~~---------------~-~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~-I~i~d~~~~~  326 (685)
                      +++  |+.||.|++||+.++.               + ...+. +...|.+++|+|++++|++|+.|++ |++||+.+++
T Consensus       150 la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~  229 (355)
T 3vu4_A          150 LVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV  229 (355)
T ss_dssp             EEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCC
T ss_pred             EEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Confidence            665  5789999999999865               1 34443 4589999999999999999999998 9999999999


Q ss_pred             eEEEEe-c-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeE--------------------Eee----ccceE
Q 005656          327 MVRKFE-G-HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDA--------------------IHV----DVSIT  380 (685)
Q Consensus       327 ~~~~~~-~-h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~--------------------~~~----~~~v~  380 (685)
                      ++..+. + |...|++++|+|||++|++++.|++|++||+..+.....                    +..    ..+..
T Consensus       230 ~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (355)
T 3vu4_A          230 LVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGC  309 (355)
T ss_dssp             EEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCC
T ss_pred             EEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCce
Confidence            999998 6 999999999999999999999999999999976532111                    111    11247


Q ss_pred             EEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          381 ALSLSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       381 ~v~~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                      .++|+|+|++|++++.|| .+++|+..
T Consensus       310 ~~a~~~d~~~l~~~~~dg-~~~~~~~~  335 (355)
T 3vu4_A          310 KIAWISESSLVVVWPHTR-MIETFKVV  335 (355)
T ss_dssp             EEEESSSSEEEEEETTTT-EEEEEEEE
T ss_pred             EEEEeCCCCEEEEEeCCC-eEEEEEEE
Confidence            799999999999999987 99999753

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=7.8e-32  Score=286.61  Aligned_cols=295  Identities=13%  Similarity=0.223  Sum_probs=233.8

Q ss_pred             cEEEEEEccCCC---------CEEEEEeC----CCcEEEEeCC--------------------------CCeeeEEeecc
Q 005656            4 AVTALAFSSDGQ---------PLLASGAS----SGVISIWNLE--------------------------KRRLQSVIREA   44 (685)
Q Consensus         4 ~V~~l~fspdg~---------~~latg~~----dg~I~vwd~~--------------------------~~~~~~~~~~~   44 (685)
                      |..++.|.|+..         .++++|+.    ...|.++++.                          +++.......+
T Consensus        47 p~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  126 (430)
T 2xyi_A           47 PSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKIN  126 (430)
T ss_dssp             CCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEEEE
T ss_pred             CceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEEEc
Confidence            456788888752         36778764    3467777542                          12222222237


Q ss_pred             cccCeeEEEEeCC-CcEEEEecCCCcEEEEEecCC------CCCCceeEecccCCCCCeEEEEecCCC-EEEEEeCCCce
Q 005656           45 HDNAIISLHFFAN-EPVLMSASADNSIKMWIFDTT------DGDPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQDRAF  116 (685)
Q Consensus        45 h~~~V~~l~~sp~-~~~l~s~s~D~~v~iWd~~~~------~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~s~dg~i  116 (685)
                      |.+.|++++|+|+ +.+|++++.||.|++|++...      .+....+..+.+|...|.+++|+|++. +|++|+.||.|
T Consensus       127 h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i  206 (430)
T 2xyi_A          127 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTI  206 (430)
T ss_dssp             ESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCE
T ss_pred             CCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeE
Confidence            9999999999997 679999999999999999762      112355667789999999999999988 99999999999


Q ss_pred             EEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeec
Q 005656          117 RLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR  196 (685)
Q Consensus       117 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  196 (685)
                      ++|++..+.......                                                             ....
T Consensus       207 ~vwd~~~~~~~~~~~-------------------------------------------------------------~~~~  225 (430)
T 2xyi_A          207 CLWDINATPKEHRVI-------------------------------------------------------------DAKN  225 (430)
T ss_dssp             EEEETTSCCBGGGEE-------------------------------------------------------------ECSE
T ss_pred             EEEeCCCCCCCCcee-------------------------------------------------------------ccce
Confidence            999997642210000                                                             0000


Q ss_pred             CCCCCCCCeEEEEEcc-CCCEEEEEecCCcEEEEECCCCc---cccccccccccccCCCCcCEEEEEEcCCCC-EEEEEE
Q 005656          197 PCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQSGI---SRGSYLDMSERSNYAHNGEVVGVACDSTNT-LMISAG  271 (685)
Q Consensus       197 ~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~~~d~~~~~---~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s  271 (685)
                      ....+...|.+++|+| ++.++++++.+|.|++||++++.   ....+        ..|...|++++|+|++. ++++|+
T Consensus       226 ~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~--------~~~~~~v~~i~~~p~~~~~l~tg~  297 (430)
T 2xyi_A          226 IFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV--------DAHTAEVNCLSFNPYSEFILATGS  297 (430)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEE--------ECCSSCEEEEEECSSCTTEEEEEE
T ss_pred             eecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEe--------ecCCCCeEEEEeCCCCCCEEEEEe
Confidence            1115678899999999 78899999999999999999873   33332        28999999999999987 688999


Q ss_pred             CCCeEEEEECCC-CceEEEee-cCCceeEEEEeecCC-EEEEEeCCCeEEEEEcCC--------------CeeEEEEecC
Q 005656          272 YHGDIKVWDFKG-RDLKSRWE-VGCSLVKIVYHRVNG-LLATVADDLVIRLFDVVA--------------LRMVRKFEGH  334 (685)
Q Consensus       272 ~dg~i~iwd~~~-~~~~~~~~-~~~~i~~~~~~~~~~-~l~~~~~dg~I~i~d~~~--------------~~~~~~~~~h  334 (685)
                      .||.|++||+++ +..+..+. +...|.+++|+|++. +|++++.|+.|++||+..              .+.+..+.+|
T Consensus       298 ~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h  377 (430)
T 2xyi_A          298 ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH  377 (430)
T ss_dssp             TTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCC
T ss_pred             CCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCC
Confidence            999999999997 45566665 558999999999995 799999999999999987              3677888899


Q ss_pred             CCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCC
Q 005656          335 TDRITDFCFSEDGK-WLLSSGMDGSLRIWDVILA  367 (685)
Q Consensus       335 ~~~I~~l~~spdg~-~l~s~s~Dg~I~iwd~~~~  367 (685)
                      ...|++++|+|+++ +|++++.||.|+||++..+
T Consensus       378 ~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          378 TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             SSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             CCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            99999999999999 8999999999999998764

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=1.3e-31  Score=285.39  Aligned_cols=280  Identities=10%  Similarity=0.098  Sum_probs=238.7

Q ss_pred             CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEee----cccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCC
Q 005656            3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR----EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT   78 (685)
Q Consensus         3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~----~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~   78 (685)
                      +.+.+++|+|++. ++++++.++.|++||+.+++....+.    .+|.+.|.+++|+|++.++++++.|+.|++||++++
T Consensus       123 ~~~~~~~~s~~~~-~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~  201 (433)
T 3bws_A          123 FQPKSVRFIDNTR-LAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL  201 (433)
T ss_dssp             SCBCCCEESSSSE-EEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC
T ss_pred             CCceEEEEeCCCe-EEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc
Confidence            3466899999666 88888899999999999998876332    278899999999999999999999999999998876


Q ss_pred             CCCCceeEecccCCCCCeEEEEecCCCEEEEEe-CCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeee
Q 005656           79 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF  157 (685)
Q Consensus        79 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (685)
                          +.+..+..|...+.+++|+|+++++++++ .|+.|++||+.+++....+                           
T Consensus       202 ----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~---------------------------  250 (433)
T 3bws_A          202 ----AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKT---------------------------  250 (433)
T ss_dssp             ----CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEC---------------------------
T ss_pred             ----eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEe---------------------------
Confidence                56666778999999999999999886555 7999999999877654433                           


Q ss_pred             ecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe--------cCCcEEEE
Q 005656          158 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT--------AGGWIERF  229 (685)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~--------~dg~i~~~  229 (685)
                                                                .....+.+++++|+|+++++++        .+|.|++|
T Consensus       251 ------------------------------------------~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~  288 (433)
T 3bws_A          251 ------------------------------------------DKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIY  288 (433)
T ss_dssp             ------------------------------------------CCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEE
T ss_pred             ------------------------------------------cCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEE
Confidence                                                      2234588999999999999988        58899999


Q ss_pred             ECCCCccccccccccccccCCCCcCEEEEEEcCCCCEE-EEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEE
Q 005656          230 NLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLM-ISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLL  308 (685)
Q Consensus       230 d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l  308 (685)
                      |+.++.....+         .|...+.+++|+|+++.+ ++++.|+.|++||+.+++....+.....+.+++|+|+++++
T Consensus       289 d~~~~~~~~~~---------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l  359 (433)
T 3bws_A          289 SMDKEKLIDTI---------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYL  359 (433)
T ss_dssp             ETTTTEEEEEE---------EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEE
T ss_pred             ECCCCcEEeec---------cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEE
Confidence            99988766554         566789999999999755 56688999999999999999888888899999999999988


Q ss_pred             EEEeC---------------CCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCC
Q 005656          309 ATVAD---------------DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM-DGSLRIWDVIL  366 (685)
Q Consensus       309 ~~~~~---------------dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~-Dg~I~iwd~~~  366 (685)
                      ++++.               ||.|++||+.+++.+..+.. ...+.+++|+|+|++|++++. |+.|++|++..
T Consensus       360 ~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          360 YVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             EEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             EEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            88876               57999999999999998886 457999999999999998875 99999999863

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-33  Score=318.52  Aligned_cols=336  Identities=14%  Similarity=0.120  Sum_probs=239.7

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCC--CCeeeEEeecccccCeeEEEEeCC--CcEEEEecCCCcEEEEEec
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLE--KRRLQSVIREAHDNAIISLHFFAN--EPVLMSASADNSIKMWIFD   76 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~--~~~~~~~~~~~h~~~V~~l~~sp~--~~~l~s~s~D~~v~iWd~~   76 (685)
                      |+++|++++|+|+|+ +|++|+.||.|+|||+.  +++....+. +|.++|++++|+|+  +++|++|+.||+|++||+.
T Consensus         8 H~~~V~~l~~s~dg~-~latg~~dg~I~vwd~~~~~~~~~~~l~-~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~   85 (753)
T 3jro_A            8 HNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE   85 (753)
T ss_dssp             CCCCEEEECCCSSSC-CEEEEETTTEEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEE
T ss_pred             CcceeEEEEECCCCC-eEEEEECCCcEEEEecCCCCCccceecc-CCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECC
Confidence            899999999999999 99999999999999998  456777777 99999999999998  8999999999999999998


Q ss_pred             CCCCCCceeEecccCCCCCeEEEEecC--CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCce
Q 005656           77 TTDGDPRLLRFRSGHSAPPLCIRFYAN--GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV  154 (685)
Q Consensus        77 ~~~~~~~~~~~~~~h~~~v~~i~~~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (685)
                      .+.  ........+|..+|++++|+|+  ++.+++|+.||.|++||+.++.......                       
T Consensus        86 ~~~--~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~-----------------------  140 (753)
T 3jro_A           86 NGR--WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII-----------------------  140 (753)
T ss_dssp             TTE--EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEE-----------------------
T ss_pred             CCc--ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeE-----------------------
Confidence            752  2366777899999999999999  9999999999999999997763221110                       


Q ss_pred             eeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEcc-------------CCCEEEEEe
Q 005656          155 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-------------CGNFAVLGT  221 (685)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-------------~g~~l~~g~  221 (685)
                                                                 ...+...+.+++|+|             +++++++|+
T Consensus       141 -------------------------------------------~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs  177 (753)
T 3jro_A          141 -------------------------------------------IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG  177 (753)
T ss_dssp             -------------------------------------------EECCSSCEEEEEECCCC---------CGGGCCEEEEE
T ss_pred             -------------------------------------------eecCCCceEEEEecCcccccccccccCCCCCEEEEEE
Confidence                                                       015678899999999             599999999


Q ss_pred             cCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCC---CCEEEEEECCCeEEEEECCCCce------EEEeec
Q 005656          222 AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST---NTLMISAGYHGDIKVWDFKGRDL------KSRWEV  292 (685)
Q Consensus       222 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~~~l~s~s~dg~i~iwd~~~~~~------~~~~~~  292 (685)
                      .||.|++||+.++.......    ....+|.+.|++++|+|+   +.++++++.||.|++||+.++..      .....+
T Consensus       178 ~dg~I~iwd~~~~~~~~~~~----~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~  253 (753)
T 3jro_A          178 ADNLVKIWKYNSDAQTYVLE----STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF  253 (753)
T ss_dssp             TTSCEEEEEEETTTTEEEEE----EEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCC
T ss_pred             CCCeEEEEeccCCcccceee----eeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCC
Confidence            99999999998875332211    122389999999999999   89999999999999999988631      122234


Q ss_pred             CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEec-CCCCeEEEEEcCCCCEEEEEeCCC-cEEEEEcCCCc-e
Q 005656          293 GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG-HTDRITDFCFSEDGKWLLSSGMDG-SLRIWDVILAR-Q  369 (685)
Q Consensus       293 ~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~-h~~~I~~l~~spdg~~l~s~s~Dg-~I~iwd~~~~~-~  369 (685)
                      ...+.+++|+|+++++++|+.||.|++||+.++........ +...-......+.+..+......+ .+..++..... .
T Consensus       254 ~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~  333 (753)
T 3jro_A          254 PDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEVHQGGGGSGGGGATSKEFDGPCQNEIDLLFSECNDEIDN  333 (753)
T ss_dssp             SSCCCCEEECTTTCCEEEECSSSCEECCBCCSSSCCBCCCCBC----------------------------------CCS
T ss_pred             CCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCCCcccccccccccCCCCCCccccccccCcCCchhhhhhcccccchHH
Confidence            57899999999999999999999999999986432211110 100000001111111111111111 11222111110 0


Q ss_pred             e----eEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEcCCCc
Q 005656          370 I----DAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMF  410 (685)
Q Consensus       370 i----~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~~~  410 (685)
                      .    ...+...++..+.|++||++|+.+..+...+++......+
T Consensus       334 ~k~i~~~~rl~s~~~~~~fs~dg~lL~~~~~~~~~~~~~~~ps~~  378 (753)
T 3jro_A          334 AKLIMKERRFTASYTFAKFSTGSMLLTKDIVGKSGVSIKRLPTEL  378 (753)
T ss_dssp             HHHHHHTTTCCSCCCCCCBCTTSCBCEECSSSTTSEECCCCCCCC
T ss_pred             HHHHHHHhhccCCcceeEeCCCCeeeeccCCCccceEEeeccccc
Confidence            0    0111234567789999999999887665567776554443

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1.8e-31  Score=276.01  Aligned_cols=282  Identities=13%  Similarity=0.139  Sum_probs=214.1

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEE-EEecCCCcEEEEEecCCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL-MSASADNSIKMWIFDTTD   79 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l-~s~s~D~~v~iWd~~~~~   79 (685)
                      |+++|++++|+|||+ +||+|+.+| ++|||+.+++......   ...+..+++.++++.+ ++++.|++|++||..++ 
T Consensus        18 h~~~V~~v~fs~dg~-~la~g~~~~-~~iw~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~-   91 (355)
T 3vu4_A           18 VSNPVTDYEFNQDQS-CLILSTLKS-FEIYNVHPVAHIMSQE---MRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKK-   91 (355)
T ss_dssp             -CCCCCEEEECTTSS-EEEEECSSE-EEEEEETTEEEEEEEE---CSCCCEEEECTTSSEEEEECSSTTEEEEEETTTT-
T ss_pred             CCCceEEEEECCCCC-EEEEEcCCE-EEEEecCCcceeeeee---cCCeEEEEEcCCCCEEEEEECCccEEEEEECCCC-
Confidence            778999999999999 999998776 7899999887665543   2358899999988877 56778899999998876 


Q ss_pred             CCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecC-ceeeEechhhHHHHHhhccccccccccCceeeee
Q 005656           80 GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQD-QQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD  158 (685)
Q Consensus        80 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (685)
                         +.+..+. |..+|.++.|+++.  ++++ .|+.|++||+.+. +....+.                           
T Consensus        92 ---~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~---------------------------  137 (355)
T 3vu4_A           92 ---QDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDI---------------------------  137 (355)
T ss_dssp             ---EEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCE---------------------------
T ss_pred             ---cEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEec---------------------------
Confidence               5565554 67799999998763  4444 4889999999766 3322221                           


Q ss_pred             cccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEE--EecCCcEEEEECCCCcc
Q 005656          159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL--GTAGGWIERFNLQSGIS  236 (685)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~--g~~dg~i~~~d~~~~~~  236 (685)
                                                               .   ....+++++  +++++  |+.+|.|++||+.++..
T Consensus       138 -----------------------------------------~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~  171 (355)
T 3vu4_A          138 -----------------------------------------R---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGS  171 (355)
T ss_dssp             -----------------------------------------E---EEEEEEEET--TEEEEEESSCTTCEEEEECCC---
T ss_pred             -----------------------------------------c---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCc
Confidence                                                     0   233445566  55655  68899999999998651


Q ss_pred             ccccccc-------c-ccccCCCCcCEEEEEEcCCCCEEEEEECCCe-EEEEECCCCceEEEee---cCCceeEEEEeec
Q 005656          237 RGSYLDM-------S-ERSNYAHNGEVVGVACDSTNTLMISAGYHGD-IKVWDFKGRDLKSRWE---VGCSLVKIVYHRV  304 (685)
Q Consensus       237 ~~~~~~~-------~-~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~---~~~~i~~~~~~~~  304 (685)
                      .......       + .....+|.+.|++++|+|++++|++|+.||+ |++||+.+++.+..+.   +...|.+++|+|+
T Consensus       172 ~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~  251 (355)
T 3vu4_A          172 ATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTD  251 (355)
T ss_dssp             ---------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTT
T ss_pred             cccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCC
Confidence            1100000       0 1123389999999999999999999999998 9999999999999887   5689999999999


Q ss_pred             CCEEEEEeCCCeEEEEEcCCCeeE--EEEe---------------------cCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 005656          305 NGLLATVADDLVIRLFDVVALRMV--RKFE---------------------GHTDRITDFCFSEDGKWLLSSGMDGSLRI  361 (685)
Q Consensus       305 ~~~l~~~~~dg~I~i~d~~~~~~~--~~~~---------------------~h~~~I~~l~~spdg~~l~s~s~Dg~I~i  361 (685)
                      +++|++++.|++|++||+..+...  ..+.                     .+......++|++||++|++++.||.+++
T Consensus       252 ~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~  331 (355)
T 3vu4_A          252 GSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIET  331 (355)
T ss_dssp             SCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEE
T ss_pred             CCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEE
Confidence            999999999999999999765311  1110                     11223477999999999999999999999


Q ss_pred             EEcCCCc
Q 005656          362 WDVILAR  368 (685)
Q Consensus       362 wd~~~~~  368 (685)
                      |++..+.
T Consensus       332 ~~~~~~~  338 (355)
T 3vu4_A          332 FKVVFDD  338 (355)
T ss_dssp             EEEEEET
T ss_pred             EEEEcCC
Confidence            9987644

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=7.7e-32  Score=288.37  Aligned_cols=284  Identities=15%  Similarity=0.237  Sum_probs=211.6

Q ss_pred             ccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCC-------CCCceeEecccCC------------CCCeEEEEecCC
Q 005656           44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD-------GDPRLLRFRSGHS------------APPLCIRFYANG  104 (685)
Q Consensus        44 ~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~-------~~~~~~~~~~~h~------------~~v~~i~~~~~~  104 (685)
                      .|.+.|++++|+|++++|++|+.||.|++|++....       ...++...+.+|.            .+|++++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            478999999999999999999999999999998763       2233577788998            899999999998


Q ss_pred             --CEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEE
Q 005656          105 --RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYV  182 (685)
Q Consensus       105 --~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (685)
                        .+|++++.||+|++|++.++............           .                             +.+. 
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~-----------~-----------------------------g~~~-  144 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEE-----------D-----------------------------GRYR-  144 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC------------------------------------------------
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCc-----------c-----------------------------cccc-
Confidence              79999999999999999876543221100000           0                             0000 


Q ss_pred             EEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcC
Q 005656          183 WRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS  262 (685)
Q Consensus       183 w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  262 (685)
                       ...       .     .....+.  .+.+.+ ..+..              .....+       ..+|...|.+++|+|
T Consensus       145 -~~~-------~-----~~~~~~~--~~~~~~-~~~~~--------------~~~~~~-------~~~h~~~v~~~~~~~  187 (447)
T 3dw8_B          145 -DPT-------T-----VTTLRVP--VFRPMD-LMVEA--------------SPRRIF-------ANAHTYHINSISINS  187 (447)
T ss_dssp             --CC-------C-----CCSCCCC--EEEEEE-EEEEE--------------EEEEEE-------CSCCSSCCCEEEECT
T ss_pred             -Ccc-------c-----ccceEec--cccchh-eeeec--------------cceEEe-------ccCCCcceEEEEEcC
Confidence             000       0     0000000  001100 00000              001111       127999999999999


Q ss_pred             CCCEEEEEECCCeEEEEECCC-CceEEEe--------ecCCceeEEEEeecC-CEEEEEeCCCeEEEEEcCCCee----E
Q 005656          263 TNTLMISAGYHGDIKVWDFKG-RDLKSRW--------EVGCSLVKIVYHRVN-GLLATVADDLVIRLFDVVALRM----V  328 (685)
Q Consensus       263 ~~~~l~s~s~dg~i~iwd~~~-~~~~~~~--------~~~~~i~~~~~~~~~-~~l~~~~~dg~I~i~d~~~~~~----~  328 (685)
                      ++++|++| .||.|++||+.+ ++....+        .+...|.+++|+|++ .+|++|+.||.|++||+++++.    +
T Consensus       188 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  266 (447)
T 3dw8_B          188 DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHS  266 (447)
T ss_dssp             TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTC
T ss_pred             CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccccee
Confidence            99999998 799999999984 4444432        345789999999998 8999999999999999999887    7


Q ss_pred             EEEecCCC------------CeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CceeeEEeeccce----------------
Q 005656          329 RKFEGHTD------------RITDFCFSEDGKWLLSSGMDGSLRIWDVIL-ARQIDAIHVDVSI----------------  379 (685)
Q Consensus       329 ~~~~~h~~------------~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~-~~~i~~~~~~~~v----------------  379 (685)
                      ..+.+|..            .|++++|+|+|++|++++. +.|++||+.+ ++++..+..+..+                
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~  345 (447)
T 3dw8_B          267 KLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDK  345 (447)
T ss_dssp             EEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCC
T ss_pred             eEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccc
Confidence            88888886            8999999999999999998 9999999997 8888888877653                


Q ss_pred             EEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656          380 TALSLSPNMDVLATAHVDQNGVYLWVNRC  408 (685)
Q Consensus       380 ~~v~~spdg~~Lat~~~d~~~I~lW~~~~  408 (685)
                      ..++|+|+|++|++++.|+ .|++|+...
T Consensus       346 ~~~~~s~~~~~l~s~s~dg-~v~iwd~~~  373 (447)
T 3dw8_B          346 FECCWNGSDSVVMTGSYNN-FFRMFDRNT  373 (447)
T ss_dssp             CCEEECTTSSEEEEECSTT-EEEEEETTT
T ss_pred             eEEEECCCCCEEEEeccCC-EEEEEEcCC
Confidence            3499999999999999997 999998653

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.4e-30  Score=277.02  Aligned_cols=302  Identities=15%  Similarity=0.184  Sum_probs=228.4

Q ss_pred             cCeeEEEEeCCC----------cEEEEecC----CCcEEEEEecCC----------------------CCCCce-eEecc
Q 005656           47 NAIISLHFFANE----------PVLMSASA----DNSIKMWIFDTT----------------------DGDPRL-LRFRS   89 (685)
Q Consensus        47 ~~V~~l~~sp~~----------~~l~s~s~----D~~v~iWd~~~~----------------------~~~~~~-~~~~~   89 (685)
                      -+..++.|.|+.          .+++.|+.    .+.|.+.+++..                      ...++. .....
T Consensus        46 wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  125 (430)
T 2xyi_A           46 WPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKI  125 (430)
T ss_dssp             SCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEEE
T ss_pred             CCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEEE
Confidence            467888898865          35776654    456777765411                      001111 23446


Q ss_pred             cCCCCCeEEEEecC-CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCc
Q 005656           90 GHSAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC  168 (685)
Q Consensus        90 ~h~~~v~~i~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (685)
                      +|.+.|++++|+|+ +.+|++++.||.|++|++..........                 ...                 
T Consensus       126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~-----------------~~~-----------------  171 (430)
T 2xyi_A          126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPS-----------------GEC-----------------  171 (430)
T ss_dssp             EESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTT-----------------CCC-----------------
T ss_pred             cCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCcc-----------------ccC-----------------
Confidence            89999999999997 7799999999999999997531110000                 000                 


Q ss_pred             ceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCC-EEEEEecCCcEEEEECCCCccccccccccccc
Q 005656          169 NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN-FAVLGTAGGWIERFNLQSGISRGSYLDMSERS  247 (685)
Q Consensus       169 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~  247 (685)
                                              ........|...+.+++|+|++. ++++|+.+|.|++|++.++........ ....
T Consensus       172 ------------------------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~  226 (430)
T 2xyi_A          172 ------------------------QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVID-AKNI  226 (430)
T ss_dssp             ------------------------CCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEE-CSEE
T ss_pred             ------------------------CCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceec-ccee
Confidence                                    00000116678899999999998 999999999999999998543221110 0112


Q ss_pred             cCCCCcCEEEEEEcC-CCCEEEEEECCCeEEEEECCCC---ceEEEe-ecCCceeEEEEeecCC-EEEEEeCCCeEEEEE
Q 005656          248 NYAHNGEVVGVACDS-TNTLMISAGYHGDIKVWDFKGR---DLKSRW-EVGCSLVKIVYHRVNG-LLATVADDLVIRLFD  321 (685)
Q Consensus       248 ~~~h~~~v~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~---~~~~~~-~~~~~i~~~~~~~~~~-~l~~~~~dg~I~i~d  321 (685)
                      ..+|...|.+++|+| ++.++++++.||.|++||++++   +....+ .+...+.+++|+|++. ++++|+.||.|++||
T Consensus       227 ~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd  306 (430)
T 2xyi_A          227 FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD  306 (430)
T ss_dssp             ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred             ecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEe
Confidence            238999999999999 6789999999999999999976   455555 4558899999999987 799999999999999


Q ss_pred             cCC-CeeEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCC--------------CceeeEEeecc-ceEEEEE
Q 005656          322 VVA-LRMVRKFEGHTDRITDFCFSEDGK-WLLSSGMDGSLRIWDVIL--------------ARQIDAIHVDV-SITALSL  384 (685)
Q Consensus       322 ~~~-~~~~~~~~~h~~~I~~l~~spdg~-~l~s~s~Dg~I~iwd~~~--------------~~~i~~~~~~~-~v~~v~~  384 (685)
                      +++ +.++..+.+|...|++++|+|+++ +|++++.||.|++||+..              ..++..+..+. .|++++|
T Consensus       307 ~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  386 (430)
T 2xyi_A          307 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW  386 (430)
T ss_dssp             TTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEE
T ss_pred             CCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEE
Confidence            998 577889999999999999999995 799999999999999987              24555555554 4999999


Q ss_pred             cCCCC-eEEEEEeCCCeEEEEEcCC
Q 005656          385 SPNMD-VLATAHVDQNGVYLWVNRC  408 (685)
Q Consensus       385 spdg~-~Lat~~~d~~~I~lW~~~~  408 (685)
                      +|+++ +|++++.|+ .|++|+...
T Consensus       387 ~p~~~~~l~s~s~dg-~i~iw~~~~  410 (430)
T 2xyi_A          387 NPNEPWIICSVSEDN-IMQVWQMAE  410 (430)
T ss_dssp             CSSSTTEEEEEETTS-EEEEEEECH
T ss_pred             CCCCCCEEEEEECCC-CEEEeEccc
Confidence            99999 788888776 999998653

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.1e-32  Score=282.19  Aligned_cols=260  Identities=10%  Similarity=0.095  Sum_probs=210.2

Q ss_pred             ccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeec
Q 005656           44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ  123 (685)
Q Consensus        44 ~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~  123 (685)
                      .-...|.+++|+|||+++||++.|++|+  |....    +   .+.+|...|.+++|+|+|       .++.+.+|+...
T Consensus        13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~----~---~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~   76 (588)
T 2j04_A           13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYA----K---DINCNSKNLFHVKEFPLE-------FENKLDFELAQQ   76 (588)
T ss_dssp             CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCC----S---CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCS
T ss_pred             HhhccEEEEEECCCCCEEEEEcCCceee--ccccc----c---eecCCCccEEEEEECCCC-------CcceEEEEeCCC
Confidence            4568999999999999999999999999  64333    2   336999999999999999       566666665422


Q ss_pred             CceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCC
Q 005656          124 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT  203 (685)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  203 (685)
                      ..   .+.                                                                  . .+..
T Consensus        77 ~~---~~~------------------------------------------------------------------~-~~~~   86 (588)
T 2j04_A           77 NG---LLN------------------------------------------------------------------S-QPVC   86 (588)
T ss_dssp             SC---SST------------------------------------------------------------------T-SCSC
T ss_pred             ce---Eee------------------------------------------------------------------c-CCCC
Confidence            11   110                                                                  0 2367


Q ss_pred             CeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCc-----CEEEEEEcCCCCEEEEEECCCeEEE
Q 005656          204 AVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNG-----EVVGVACDSTNTLMISAGYHGDIKV  278 (685)
Q Consensus       204 ~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~-----~v~~l~~~~~~~~l~s~s~dg~i~i  278 (685)
                      .|.+++|||+|..+++++.+|.|++||.++  ....+         .|..     .|.+++|+|+|++|++|+.||+|++
T Consensus        87 ~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l---------~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkI  155 (588)
T 2j04_A           87 YPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNL---------DSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQF  155 (588)
T ss_dssp             CEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEEC---------CCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeec---------cCCCccccccEEEEEEcCCCCEEEEEcCCCEEEE
Confidence            899999999999999999999999999654  22211         2333     5999999999999999999999999


Q ss_pred             EECCCCce-------EEEeec-----CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCe---eEEEEe-cCCCCeEEEE
Q 005656          279 WDFKGRDL-------KSRWEV-----GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALR---MVRKFE-GHTDRITDFC  342 (685)
Q Consensus       279 wd~~~~~~-------~~~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~---~~~~~~-~h~~~I~~l~  342 (685)
                      ||+.++..       +.++..     ...|.+++|+|+|  +++++.|++|++||+.+++   ..+++. +|...|.+++
T Consensus       156 Wd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sva  233 (588)
T 2j04_A          156 FSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLK  233 (588)
T ss_dssp             EECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEE
T ss_pred             EECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEE
Confidence            99998853       455532     2589999999999  8889999999999999877   346774 7889999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEEcCCCceee-EEeeccceEEEEE--cCCCCeEEEEEeCCCeEEEEEcC
Q 005656          343 FSEDGKWLLSSGMDGSLRIWDVILARQID-AIHVDVSITALSL--SPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       343 ~spdg~~l~s~s~Dg~I~iwd~~~~~~i~-~~~~~~~v~~v~~--spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                      |+  |++||+++ +++|++||+.+++... .+.+...|.+++|  +|++..|++++.|| . ++|...
T Consensus       234 Fs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG-~-klw~~d  296 (588)
T 2j04_A          234 IV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTS-Y-KVLLED  296 (588)
T ss_dssp             EE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCE-E-EEEESS
T ss_pred             EE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCC-C-EEEeec
Confidence            99  68999997 6999999999888743 3345555999999  99999999999887 7 999854

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.5e-32  Score=277.35  Aligned_cols=273  Identities=12%  Similarity=0.084  Sum_probs=207.5

Q ss_pred             EeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechh
Q 005656           54 FFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQR  133 (685)
Q Consensus        54 ~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~  133 (685)
                      +.+++.+|++|+.||+|++||+..+    +.+..+.  ...|.++.|+|+   +++++.|++|++|+....         
T Consensus        44 ~~~d~~~l~sg~~Dg~v~iwd~~~~----~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~---------  105 (343)
T 3lrv_A           44 MYYDKWVCMCRCEDGALHFTQLKDS----KTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQ---------  105 (343)
T ss_dssp             SSEEEEEEEEEEETTEEEEEEESSS----SCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTE---------
T ss_pred             hcCCCCEEEEECCCCcEEEEECCCC----cEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCc---------
Confidence            3456778888888889999988776    3333332  456777788877   888888898998886432         


Q ss_pred             hHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEcc-
Q 005656          134 HVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-  212 (685)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-  212 (685)
                                                                    +.+|+..........   ...+...|.+++++| 
T Consensus       106 ----------------------------------------------~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~  136 (343)
T 3lrv_A          106 ----------------------------------------------ITILDSKTNKVLREI---EVDSANEIIYMYGHNE  136 (343)
T ss_dssp             ----------------------------------------------EEEEETTTCCEEEEE---ECCCSSCEEEEECCC-
T ss_pred             ----------------------------------------------eEEeecCCcceeEEe---ecCCCCCEEEEEcCCC
Confidence                                                          223333322211111   114567899999999 


Q ss_pred             -CCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceE-EEe
Q 005656          213 -CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLK-SRW  290 (685)
Q Consensus       213 -~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~  290 (685)
                       +++++++|+.||.|++||+.++.......       ..|...|.+++|+|++.++++|+.||.|++||+++++.. ..+
T Consensus       137 ~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-------~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~  209 (343)
T 3lrv_A          137 VNTEYFIWADNRGTIGFQSYEDDSQYIVHS-------AKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRF  209 (343)
T ss_dssp             --CCEEEEEETTCCEEEEESSSSCEEEEEC-------CCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEEC
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCcEEEEEe-------cCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEE
Confidence             99999999999999999999988754432       156668999999999999999999999999999998877 666


Q ss_pred             ec--CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEec---CCCCeE--EEEEcCCCCEEEEEeC-CCcEEEE
Q 005656          291 EV--GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG---HTDRIT--DFCFSEDGKWLLSSGM-DGSLRIW  362 (685)
Q Consensus       291 ~~--~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~---h~~~I~--~l~~spdg~~l~s~s~-Dg~I~iw  362 (685)
                      ..  ..+|.+++|+|++.+|++++. +.|++||+++++.+..+..   |...+.  +++|+|+|++|++++. |+.|++|
T Consensus       210 ~~~h~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~  288 (343)
T 3lrv_A          210 PVDEEAKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIY  288 (343)
T ss_dssp             CCCTTSCEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             eccCCCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEE
Confidence            54  589999999999999999995 4999999999877655443   444454  6999999999999998 9999999


Q ss_pred             EcCCCceeeEEeeccceEEEEEcC---CCCeEEEEEeCCCeEEEEE
Q 005656          363 DVILARQIDAIHVDVSITALSLSP---NMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       363 d~~~~~~i~~~~~~~~v~~v~~sp---dg~~Lat~~~d~~~I~lW~  405 (685)
                      ++..+......   .++..++|+|   ++..+++++.|+ .+.++.
T Consensus       289 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~d~-~~~~~~  330 (343)
T 3lrv_A          289 KFDKKTKNWTK---DEESALCLQSDTADFTDMDVVCGDG-GIAAIL  330 (343)
T ss_dssp             EECTTTCSEEE---EEEEECCC----CCCCEEEEEEETT-EEEEEE
T ss_pred             EEcccccceEe---cCceeEecCccccccceeEEEecCC-ceEEEE
Confidence            99766543332   5688999999   999999999998 788774

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.98  E-value=1.9e-29  Score=264.70  Aligned_cols=266  Identities=11%  Similarity=0.123  Sum_probs=225.0

Q ss_pred             cEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEE-EEEeCCCceEEEEeecCceeeEechhhHHH
Q 005656           59 PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHI-LSAGQDRAFRLFSVIQDQQSRELSQRHVAK  137 (685)
Q Consensus        59 ~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~  137 (685)
                      .++++++.|+.|++||+.++    +.+..+.+|. .+.+++|+|+++++ ++++.|+.|++||+.+++....+.      
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~----~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~------   71 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSN----KVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP------   71 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTT----EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE------
T ss_pred             EEEEEcCCCCEEEEEECCCC----eEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEE------
Confidence            47888999999999999876    6666666665 48999999999987 566789999999998876655442      


Q ss_pred             HHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEE
Q 005656          138 RARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFA  217 (685)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  217 (685)
                                                                                     ....+.+++|+|+|+++
T Consensus        72 ---------------------------------------------------------------~~~~v~~~~~spdg~~l   88 (391)
T 1l0q_A           72 ---------------------------------------------------------------AGSSPQGVAVSPDGKQV   88 (391)
T ss_dssp             ---------------------------------------------------------------CSSSEEEEEECTTSSEE
T ss_pred             ---------------------------------------------------------------CCCCccceEECCCCCEE
Confidence                                                                           22378999999999988


Q ss_pred             EEEe-cCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEE-EEEECCCeEEEEECCCCceEEEeecCCc
Q 005656          218 VLGT-AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLM-ISAGYHGDIKVWDFKGRDLKSRWEVGCS  295 (685)
Q Consensus       218 ~~g~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~  295 (685)
                      ++++ .++.|++||+.+++....+         .+...+.+++|+|+++.+ ++++.|+.|++||+.+++....+..+..
T Consensus        89 ~~~~~~~~~v~v~d~~~~~~~~~~---------~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~  159 (391)
T 1l0q_A           89 YVTNMASSTLSVIDTTSNTVAGTV---------KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRS  159 (391)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEE---------ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSS
T ss_pred             EEEECCCCEEEEEECCCCeEEEEE---------eCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCC
Confidence            6554 6699999999998876655         344578999999999977 6777899999999999999999888888


Q ss_pred             eeEEEEeecCCEE-EEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEe---CCCcEEEEEcCCCceee
Q 005656          296 LVKIVYHRVNGLL-ATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG---MDGSLRIWDVILARQID  371 (685)
Q Consensus       296 i~~~~~~~~~~~l-~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s---~Dg~I~iwd~~~~~~i~  371 (685)
                      +..++|+|+++.+ ++++.++.|++||+.+++.+..+. +...+.+++|+|+|++|++++   .++.|++||+.+++.+.
T Consensus       160 ~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~  238 (391)
T 1l0q_A          160 PKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITA  238 (391)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEE
T ss_pred             cceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEE
Confidence            8999999999977 567788999999999999888876 556799999999999999888   68999999999999999


Q ss_pred             EEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656          372 AIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRC  408 (685)
Q Consensus       372 ~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~  408 (685)
                      .+..+..+.+++|+|+|++|++++..++.|++|+...
T Consensus       239 ~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~  275 (391)
T 1l0q_A          239 RIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTAT  275 (391)
T ss_dssp             EEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             EEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence            9988888999999999998865544445999999653

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.98  E-value=3.2e-31  Score=301.58  Aligned_cols=254  Identities=17%  Similarity=0.234  Sum_probs=212.4

Q ss_pred             EeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecC--CCEEEEEeCCCceE
Q 005656           40 VIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--GRHILSAGQDRAFR  117 (685)
Q Consensus        40 ~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~--~~~l~s~s~dg~i~  117 (685)
                      .+. +|.++|++++|+|++++|++|+.||+|++|++..+.  ......+.+|..+|++++|+|+  +++|++|+.||.|+
T Consensus         4 ~l~-gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~--~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~   80 (753)
T 3jro_A            4 IAN-AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET--HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL   80 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE--EEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred             ecc-cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC--CccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence            444 999999999999999999999999999999987432  2667778899999999999988  99999999999999


Q ss_pred             EEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecC
Q 005656          118 LFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRP  197 (685)
Q Consensus       118 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  197 (685)
                      +||+.++.......                                                                  
T Consensus        81 vwd~~~~~~~~~~~------------------------------------------------------------------   94 (753)
T 3jro_A           81 IWKEENGRWSQIAV------------------------------------------------------------------   94 (753)
T ss_dssp             EEEEETTEEEEEEE------------------------------------------------------------------
T ss_pred             EEECCCCccccccc------------------------------------------------------------------
Confidence            99998765211110                                                                  


Q ss_pred             CCCCCCCeEEEEEccC--CCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcC-------------
Q 005656          198 CPENPTAVKACTISAC--GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS-------------  262 (685)
Q Consensus       198 ~~~~~~~v~~~~~s~~--g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-------------  262 (685)
                      ...+...|.+++|+|+  ++++++|+.||.|++||+.++......      ...+|...|.+++|+|             
T Consensus        95 ~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~------~~~~~~~~v~~l~~~p~~~~~~~~~~~~~  168 (753)
T 3jro_A           95 HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI------IIDAHAIGVNSASWAPATIEEDGEHNGTK  168 (753)
T ss_dssp             ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCE------EEECCSSCEEEEEECCCC---------CG
T ss_pred             ccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCccee------EeecCCCceEEEEecCcccccccccccCC
Confidence            0157789999999999  999999999999999999987443222      1238999999999999             


Q ss_pred             CCCEEEEEECCCeEEEEECCCC----ceEEEee-cCCceeEEEEeec---CCEEEEEeCCCeEEEEEcCCCe-----eEE
Q 005656          263 TNTLMISAGYHGDIKVWDFKGR----DLKSRWE-VGCSLVKIVYHRV---NGLLATVADDLVIRLFDVVALR-----MVR  329 (685)
Q Consensus       263 ~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~-~~~~i~~~~~~~~---~~~l~~~~~dg~I~i~d~~~~~-----~~~  329 (685)
                      ++.++++|+.||.|++||++++    .....+. +..+|.+++|+|+   ++++++|+.||.|++||+.+++     .+.
T Consensus       169 d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~  248 (753)
T 3jro_A          169 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLL  248 (753)
T ss_dssp             GGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBS
T ss_pred             CCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEe
Confidence            5899999999999999999876    3444444 3588999999999   8999999999999999999864     333


Q ss_pred             EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 005656          330 KFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR  368 (685)
Q Consensus       330 ~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~  368 (685)
                      ...+|...|++++|+|+|++|++|+.||.|++|++.++.
T Consensus       249 ~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          249 KEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             SSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred             ccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence            345688999999999999999999999999999998654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.97  E-value=2.6e-29  Score=273.33  Aligned_cols=326  Identities=13%  Similarity=0.066  Sum_probs=253.4

Q ss_pred             EEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEe--cCCCCCCceeE
Q 005656            9 AFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF--DTTDGDPRLLR   86 (685)
Q Consensus         9 ~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~--~~~~~~~~~~~   86 (685)
                      +|+|++. ++++++.+++|.+||..+++++.++..+|.  +.+++|+|||++|++++.|++|++||+  .+.    +++.
T Consensus       144 ~~~p~~~-~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~----~~~~  216 (543)
T 1nir_A          144 DLDLPNL-FSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEP----TKVA  216 (543)
T ss_dssp             CCCGGGE-EEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSC----EEEE
T ss_pred             ccCCCCE-EEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCC----cEEE
Confidence            4889887 899999999999999999999999874444  899999999999999999999999999  443    5566


Q ss_pred             ecccCCCCCeEEEEec----CCCEEEEEeC-CCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccc
Q 005656           87 FRSGHSAPPLCIRFYA----NGRHILSAGQ-DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE  161 (685)
Q Consensus        87 ~~~~h~~~v~~i~~~~----~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (685)
                      .+. +...+..++|+|    +|+++++++. +++|.+||..+.+....+.....                          
T Consensus       217 ~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~--------------------------  269 (543)
T 1nir_A          217 EIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM--------------------------  269 (543)
T ss_dssp             EEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEE--------------------------
T ss_pred             EEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCc--------------------------
Confidence            655 455679999999    9999999885 89999999988776665531000                          


Q ss_pred             ccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCC-CCCeEEEEEccCCCEE-EEEecCCcEEEEECCCCccccc
Q 005656          162 IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN-PTAVKACTISACGNFA-VLGTAGGWIERFNLQSGISRGS  239 (685)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l-~~g~~dg~i~~~d~~~~~~~~~  239 (685)
                                                      .......+ ...+.++.++|++..+ ++...+|.|.+||+.++.....
T Consensus       270 --------------------------------~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~  317 (543)
T 1nir_A          270 --------------------------------TVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTV  317 (543)
T ss_dssp             --------------------------------CSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEE
T ss_pred             --------------------------------ccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCccee
Confidence                                            00000011 2368899999977654 5566789999999988654331


Q ss_pred             cccccccccCCCCcCEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCceEEEeecC-----CceeEEEEeec-CCEEEEEe
Q 005656          240 YLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWEVG-----CSLVKIVYHRV-NGLLATVA  312 (685)
Q Consensus       240 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~-----~~i~~~~~~~~-~~~l~~~~  312 (685)
                      .       ...+...+.++.|+|+++++++++ .+++|.+||..++++...+...     .....+ ++|+ +.+++++.
T Consensus       318 ~-------~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~  389 (543)
T 1nir_A          318 T-------SIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSH  389 (543)
T ss_dssp             E-------EEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEB
T ss_pred             E-------EeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEecc
Confidence            1       013456678899999999877665 6899999999999998887742     222222 5777 55666665


Q ss_pred             -CCCeEEEEEcCC-------CeeEEEEecCCCCeEEEEEcCCCCEEEEEe-------CCCcEEEEEcCCCcee-eEEe--
Q 005656          313 -DDLVIRLFDVVA-------LRMVRKFEGHTDRITDFCFSEDGKWLLSSG-------MDGSLRIWDVILARQI-DAIH--  374 (685)
Q Consensus       313 -~dg~I~i~d~~~-------~~~~~~~~~h~~~I~~l~~spdg~~l~s~s-------~Dg~I~iwd~~~~~~i-~~~~--  374 (685)
                       .|++|.+||+.+       +++++++.+|.+.+..++|+|||++|++++       .+++|.+||+.+++.. ..+.  
T Consensus       390 ~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~  469 (543)
T 1nir_A          390 LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIA  469 (543)
T ss_dssp             SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHH
T ss_pred             CCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeech
Confidence             689999999998       899999999998899999999999999987       2779999999999887 5542  


Q ss_pred             -------eccceEEEEEcCCCCeEEEEEe----CCCeEEEEEcCC
Q 005656          375 -------VDVSITALSLSPNMDVLATAHV----DQNGVYLWVNRC  408 (685)
Q Consensus       375 -------~~~~v~~v~~spdg~~Lat~~~----d~~~I~lW~~~~  408 (685)
                             +...+..+.|+|+|+.|+++..    +.+.|.|||.+.
T Consensus       470 ~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t  514 (543)
T 1nir_A          470 EWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKT  514 (543)
T ss_dssp             HHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred             hhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCC
Confidence                   2345999999999999998854    235999998654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=1.9e-29  Score=248.57  Aligned_cols=278  Identities=11%  Similarity=0.177  Sum_probs=202.9

Q ss_pred             EEEEEEccCC-C-CEEEEEeCCCcEEEEeCCCC---eeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCC
Q 005656            5 VTALAFSSDG-Q-PLLASGASSGVISIWNLEKR---RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD   79 (685)
Q Consensus         5 V~~l~fspdg-~-~~latg~~dg~I~vwd~~~~---~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~   79 (685)
                      +.++-|-.-| + ..+++++ ...|++|+..++   +..++.. +|..+|..+.|.||..-|+...           .+ 
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~-----------~~-  107 (356)
T 2w18_A           42 VSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWH-FAEVPVLQIVPVPDVYNLVCVA-----------LG-  107 (356)
T ss_dssp             EEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEE-CCSSCEEEECCCTTCCSCEEEE-----------EC-
T ss_pred             EeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEe-ccCceeEEEEEcCcccceeeee-----------ec-
Confidence            4555554433 2 3556666 577999999998   8899998 9999999999999864333221           11 


Q ss_pred             CCCceeEecccCCCCCeEEEEecC----CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCcee
Q 005656           80 GDPRLLRFRSGHSAPPLCIRFYAN----GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI  155 (685)
Q Consensus        80 ~~~~~~~~~~~h~~~v~~i~~~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (685)
                               .-+...|.+++|+||    ++++++++.+  +++|++.+++......                        
T Consensus       108 ---------~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~------------------------  152 (356)
T 2w18_A          108 ---------NLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSG------------------------  152 (356)
T ss_dssp             ---------SSSEEEEEEECC------CCEEEEEEEEE--EEEEEETTTEEEEEES------------------------
T ss_pred             ---------cccccceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEEEecc------------------------
Confidence                     124556899999999    9999998854  7788774433222110                        


Q ss_pred             eeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECC-CC
Q 005656          156 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ-SG  234 (685)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~-~~  234 (685)
                                                                 .++                     ++.|++|++. +|
T Consensus       153 -------------------------------------------~g~---------------------d~~V~~~~~s~dG  168 (356)
T 2w18_A          153 -------------------------------------------TLS---------------------DQQVEVMTFAEDG  168 (356)
T ss_dssp             -------------------------------------------SST---------------------TCEEEEEEECTTS
T ss_pred             -------------------------------------------cCC---------------------CCcEEEEEECCCC
Confidence                                                       023                     4455555552 23


Q ss_pred             ccccccccccccccCCCCcCEEEEEEcC---CCCEEEEEECCCeEEEEECCCCceEEEeecC----CceeEEEEeecCCE
Q 005656          235 ISRGSYLDMSERSNYAHNGEVVGVACDS---TNTLMISAGYHGDIKVWDFKGRDLKSRWEVG----CSLVKIVYHRVNGL  307 (685)
Q Consensus       235 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~----~~i~~~~~~~~~~~  307 (685)
                      +....+.        .|...++.++|++   ++..|++++.|++|++||+++++.+.++..+    ..+.+++|+|+|.+
T Consensus       169 ~~~~s~~--------~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~  240 (356)
T 2w18_A          169 GGKENQF--------LMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLL  240 (356)
T ss_dssp             CEEEEEE--------ECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEE
T ss_pred             ceeeeec--------cCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCE
Confidence            3333332        7888888888888   7799999999999999999999999998743    35778899999987


Q ss_pred             E------------EEEeCCCeEEEEEcCCCeeEEEE-----ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcee
Q 005656          308 L------------ATVADDLVIRLFDVVALRMVRKF-----EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI  370 (685)
Q Consensus       308 l------------~~~~~dg~I~i~d~~~~~~~~~~-----~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i  370 (685)
                      +            ++|+.|++|++||..+++.+..+     .+|...+.+..++  +.++++++.|++|+|||+.+++++
T Consensus       241 lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l  318 (356)
T 2w18_A          241 FIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCT  318 (356)
T ss_dssp             EEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEE
T ss_pred             EEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEE
Confidence            6            56788999999999999988776     3777776555554  889999999999999999999999


Q ss_pred             eEEeeccc--eEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656          371 DAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       371 ~~~~~~~~--v~~v~~spdg~~Lat~~~d~~~I~lW~~  406 (685)
                      ..+..|..  +.+++|||||++|++|+.|+ +|+||+.
T Consensus       319 ~tL~gH~~~vvs~vafSPDG~~LaSGS~D~-TIklWd~  355 (356)
T 2w18_A          319 ALLPPVSDQHWSFVKWSGTDSHLLAGQKDG-NIFVYHY  355 (356)
T ss_dssp             EEECCC--CCCCEEEECSSSSEEEEECTTS-CEEEEEE
T ss_pred             EEecCCCCCeEEEEEECCCCCEEEEEECCC-cEEEecC
Confidence            99986644  45689999999999999997 9999984

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=9.3e-31  Score=274.64  Aligned_cols=258  Identities=13%  Similarity=0.152  Sum_probs=174.2

Q ss_pred             EEEccCCCCEEEEEeCCCcEEEEeCCCCeeeE-----EeecccccCeeEEEEeC--------CCcEEEEecCCCcEEEEE
Q 005656            8 LAFSSDGQPLLASGASSGVISIWNLEKRRLQS-----VIREAHDNAIISLHFFA--------NEPVLMSASADNSIKMWI   74 (685)
Q Consensus         8 l~fspdg~~~latg~~dg~I~vwd~~~~~~~~-----~~~~~h~~~V~~l~~sp--------~~~~l~s~s~D~~v~iWd   74 (685)
                      ..+++++. +||+|+.|++|+|||+.++....     .+. +|.+.|++++|+|        |+++|||+|.|++|+|||
T Consensus        95 ~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~~~~~~~-gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd  172 (393)
T 4gq1_A           95 NSSPVYSL-FLACVCQDNTVRLIITKNETIITQHVLGGKS-GHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWR  172 (393)
T ss_dssp             --CCEEEE-EEEEEETTSCEEEEEEETTEEEEEEEECTTT-SCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEE
T ss_pred             eecCCCCC-EEEEEeCCCcEEEEECCCCccceeeeecccC-CCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEE
Confidence            34445555 89999999999999999886543     234 8999999999998        889999999999999999


Q ss_pred             ecCCCCCCceeEecccCCCCCeEEEEecCC-CEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCc
Q 005656           75 FDTTDGDPRLLRFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKP  153 (685)
Q Consensus        75 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (685)
                      +..+    ..+....+|..+|.+++|+|++ .+|++++.||+|++||+.+++..........                  
T Consensus       173 ~~~~----~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~------------------  230 (393)
T 4gq1_A          173 LTDE----GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTEL------------------  230 (393)
T ss_dssp             EETT----EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------------------------
T ss_pred             CCCC----ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCC------------------
Confidence            9876    5566667899999999999987 4799999999999999987765443321000                  


Q ss_pred             eeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCC
Q 005656          154 VIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS  233 (685)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~  233 (685)
                                                                    .....+......+.....                
T Consensus       231 ----------------------------------------------~~~~~~~s~~~~~~~~~~----------------  248 (393)
T 4gq1_A          231 ----------------------------------------------VKNPWLLTLNTLPLVNTC----------------  248 (393)
T ss_dssp             ----------------------------------------------CSCCCSEEEESGGGC-------------------
T ss_pred             ----------------------------------------------cccceEEecccccceeee----------------
Confidence                                                          000001111110000000                


Q ss_pred             CccccccccccccccCCCCcCEEEEEEc-CCCCEEEEEECCCeEEEEECCCCceEEEee-------------------cC
Q 005656          234 GISRGSYLDMSERSNYAHNGEVVGVACD-STNTLMISAGYHGDIKVWDFKGRDLKSRWE-------------------VG  293 (685)
Q Consensus       234 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------------------~~  293 (685)
                                   ...+|...+.++.|. ++++.+++++.|+++++||+..++....+.                   ..
T Consensus       249 -------------~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  315 (393)
T 4gq1_A          249 -------------HSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLF  315 (393)
T ss_dssp             ----------------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSS
T ss_pred             -------------ecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccccc
Confidence                         011556666666664 566666777777777777766544332221                   11


Q ss_pred             CceeEEEEee--cCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005656          294 CSLVKIVYHR--VNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI  365 (685)
Q Consensus       294 ~~i~~~~~~~--~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~  365 (685)
                      .......++|  ++.++++|+.||.|++||+.+++.+..+.+|..+|++++|||||++||+++.+| +.+|.+.
T Consensus       316 ~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          316 PSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             CCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred             CcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence            2222334444  333677888999999999999999888889999999999999999999999776 6667654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=1e-29  Score=266.78  Aligned_cols=243  Identities=11%  Similarity=0.043  Sum_probs=172.2

Q ss_pred             CCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcce
Q 005656           91 HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNV  170 (685)
Q Consensus        91 h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (685)
                      |...+....+.+++.+|++++.|++|++||+..+......                                        
T Consensus        88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~----------------------------------------  127 (393)
T 4gq1_A           88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQH----------------------------------------  127 (393)
T ss_dssp             ---------CCEEEEEEEEEETTSCEEEEEEETTEEEEEE----------------------------------------
T ss_pred             cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceee----------------------------------------
Confidence            3333444444556778999999999999999877543321                                        


Q ss_pred             EEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEcc--------CCCEEEEEecCCcEEEEECCCCcccccccc
Q 005656          171 VTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA--------CGNFAVLGTAGGWIERFNLQSGISRGSYLD  242 (685)
Q Consensus       171 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--------~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~  242 (685)
                                             .+....+|...|.+++|+|        +|++|++|+.|++|++||+.++.....+. 
T Consensus       128 -----------------------~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~-  183 (393)
T 4gq1_A          128 -----------------------VLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGY-  183 (393)
T ss_dssp             -----------------------EECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEE-
T ss_pred             -----------------------eecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeec-
Confidence                                   1223348899999999998        88999999999999999998877665543 


Q ss_pred             ccccccCCCCcCEEEEEEcCCC-CEEEEEECCCeEEEEECCCCceEEEe--------------------------ecCCc
Q 005656          243 MSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRW--------------------------EVGCS  295 (685)
Q Consensus       243 ~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~--------------------------~~~~~  295 (685)
                             .|...|.+++|+|++ .+|++++.||+|++||+.+++.....                          .+...
T Consensus       184 -------~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  256 (393)
T 4gq1_A          184 -------PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASS  256 (393)
T ss_dssp             -------ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSS
T ss_pred             -------CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccccc
Confidence                   788999999999987 47999999999999999877543221                          12256


Q ss_pred             eeEEEEe-ecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcC--------------------CCCEEEEEe
Q 005656          296 LVKIVYH-RVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE--------------------DGKWLLSSG  354 (685)
Q Consensus       296 i~~~~~~-~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp--------------------dg~~l~s~s  354 (685)
                      +.++.|+ |+++.+++++.|+++++||+.+++....+..|...+..+.++|                    ++.++++|+
T Consensus       257 v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs  336 (393)
T 4gq1_A          257 LANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHS  336 (393)
T ss_dssp             CSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEET
T ss_pred             ceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEEC
Confidence            7788887 7999999999999999999998887777777666555444433                    334677888


Q ss_pred             CCCcEEEEEcCCCceeeEEe-eccceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656          355 MDGSLRIWDVILARQIDAIH-VDVSITALSLSPNMDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       355 ~Dg~I~iwd~~~~~~i~~~~-~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~  406 (685)
                      .||+|++||+.+++.+.... ++.+|++++|||||++||+++.+  ++.+|.+
T Consensus       337 ~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~--Gv~lvrL  387 (393)
T 4gq1_A          337 QHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEG--SVLLTRL  387 (393)
T ss_dssp             TTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESS--EEEEEEE
T ss_pred             CCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCC--CeEEEEE
Confidence            99999999999998877665 45569999999999999999865  6777753

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.97  E-value=1.7e-29  Score=266.56  Aligned_cols=299  Identities=11%  Similarity=0.054  Sum_probs=234.3

Q ss_pred             cEEEEEEccCCCCEEEEEe----CCC----cEEEEeC--CCCeee--EEeecccccCeeEEEEeC--------------C
Q 005656            4 AVTALAFSSDGQPLLASGA----SSG----VISIWNL--EKRRLQ--SVIREAHDNAIISLHFFA--------------N   57 (685)
Q Consensus         4 ~V~~l~fspdg~~~latg~----~dg----~I~vwd~--~~~~~~--~~~~~~h~~~V~~l~~sp--------------~   57 (685)
                      .|...+|++.|..++++|+    .+|    .|++||+  .+++.+  ..+. +|...+..+++++              .
T Consensus        64 ~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~g~~~~~  142 (415)
T 2hqs_A           64 EVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYK-VNKQWLRYAGHTASDEVFEKLTGIKGAF  142 (415)
T ss_dssp             GCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEE-ECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred             CcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEE-cChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence            4566678888877888886    467    8999999  888876  4466 8988888888875              1


Q ss_pred             CcEEEEecCC------CcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCC---ceEEEEeecCceee
Q 005656           58 EPVLMSASAD------NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR---AFRLFSVIQDQQSR  128 (685)
Q Consensus        58 ~~~l~s~s~D------~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg---~i~vwd~~~~~~~~  128 (685)
                      +..++.++.+      ++|++||++..     ....+.+|...+.+++|+|+|++|++++.++   .|++||+.+++...
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~-----~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~  217 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGY-----NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ  217 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSC-----SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCC-----CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE
Confidence            4555555543      79999998743     2455567899999999999999999999885   99999998775432


Q ss_pred             EechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEE
Q 005656          129 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKAC  208 (685)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~  208 (685)
                      ..                                                                     .+...+.++
T Consensus       218 l~---------------------------------------------------------------------~~~~~~~~~  228 (415)
T 2hqs_A          218 VA---------------------------------------------------------------------SFPRHNGAP  228 (415)
T ss_dssp             EE---------------------------------------------------------------------CCSSCEEEE
T ss_pred             ee---------------------------------------------------------------------cCCCcccCE
Confidence            11                                                                     345678999


Q ss_pred             EEccCCCEEE-EEecCCc--EEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC-CC--eEEEEECC
Q 005656          209 TISACGNFAV-LGTAGGW--IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-HG--DIKVWDFK  282 (685)
Q Consensus       209 ~~s~~g~~l~-~g~~dg~--i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-dg--~i~iwd~~  282 (685)
                      +|+|+|+.++ +++.+|.  |++||+.++.... +        ..|...+.+++|+|+|++|++++. ++  .|++||+.
T Consensus       229 ~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~-l--------~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~  299 (415)
T 2hqs_A          229 AFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-V--------TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN  299 (415)
T ss_dssp             EECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-C--------CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred             EEcCCCCEEEEEEecCCCceEEEEECCCCCEEe-C--------cCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECC
Confidence            9999999888 5555554  9999999887532 2        267889999999999999988886 44  68888998


Q ss_pred             CCceEEEeecCCceeEEEEeecCCEEEEEeCC---CeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCC--
Q 005656          283 GRDLKSRWEVGCSLVKIVYHRVNGLLATVADD---LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG--  357 (685)
Q Consensus       283 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg--  357 (685)
                      +++..........+..++|+|+|++|++++.+   ..|++||+.+++. ..+..|. .+.+++|+|||++|++++.++  
T Consensus       300 ~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~  377 (415)
T 2hqs_A          300 GGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMG  377 (415)
T ss_dssp             SSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECTTSSEEEEEEEETTE
T ss_pred             CCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCc
Confidence            88765544455778899999999999888764   5899999999876 4566564 899999999999999988777  


Q ss_pred             -cEEEEEcCCCceeeEEeec-cceEEEEEcCCCC
Q 005656          358 -SLRIWDVILARQIDAIHVD-VSITALSLSPNMD  389 (685)
Q Consensus       358 -~I~iwd~~~~~~i~~~~~~-~~v~~v~~spdg~  389 (685)
                       .|++||+.. .....+..+ ..|.+++|+|.-.
T Consensus       378 ~~l~~~d~~g-~~~~~l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          378 SVLNLVSTDG-RFKARLPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             EEEEEEETTS-CCEEECCCSSSEEEEEEECCCCC
T ss_pred             cEEEEEECCC-CcEEEeeCCCCCCcCCccccccc
Confidence             799999874 445556554 5599999999653

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1e-29  Score=261.82  Aligned_cols=226  Identities=10%  Similarity=0.128  Sum_probs=180.6

Q ss_pred             EecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCce
Q 005656          100 FYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQ  179 (685)
Q Consensus       100 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (685)
                      +.+++..+++|+.||+|++||+.+++....+.                                                
T Consensus        44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~------------------------------------------------   75 (343)
T 3lrv_A           44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT------------------------------------------------   75 (343)
T ss_dssp             SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE------------------------------------------------
T ss_pred             hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe------------------------------------------------
Confidence            34577899999999999999998887655542                                                


Q ss_pred             EEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCC---------CccccccccccccccCC
Q 005656          180 AYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS---------GISRGSYLDMSERSNYA  250 (685)
Q Consensus       180 ~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~---------~~~~~~~~~~~~~~~~~  250 (685)
                                            ...+.++.++|+   +++|+.|+.|++|+...         +.....+       ..+
T Consensus        76 ----------------------~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~-------~~~  123 (343)
T 3lrv_A           76 ----------------------TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREI-------EVD  123 (343)
T ss_dssp             ----------------------EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEE-------ECC
T ss_pred             ----------------------cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEe-------ecC
Confidence                                  012333445555   77888888888886653         3322222       126


Q ss_pred             CCcCEEEEEEcC--CCCEEEEEECCCeEEEEECCCCceEEEeec--CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCe
Q 005656          251 HNGEVVGVACDS--TNTLMISAGYHGDIKVWDFKGRDLKSRWEV--GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALR  326 (685)
Q Consensus       251 h~~~v~~l~~~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~  326 (685)
                      |.+.|.+++|+|  +++++++++.||+|++||+.+++.......  ...+.+++|+|++.+|++|+.||.|++||+++++
T Consensus       124 ~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~  203 (343)
T 3lrv_A          124 SANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPD  203 (343)
T ss_dssp             CSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTT
T ss_pred             CCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCC
Confidence            778999999999  999999999999999999999988765533  3579999999999999999999999999999998


Q ss_pred             eE-EEEec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEee---c-cce--EEEEEcCCCCeEEEEEe-C
Q 005656          327 MV-RKFEG-HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV---D-VSI--TALSLSPNMDVLATAHV-D  397 (685)
Q Consensus       327 ~~-~~~~~-h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~---~-~~v--~~v~~spdg~~Lat~~~-d  397 (685)
                      .+ ..+.+ |.++|++++|+|+|.+|++++ |+.|++||+.+++.+..+..   + ..+  .+++|+|+|++|++++. |
T Consensus       204 ~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d  282 (343)
T 3lrv_A          204 QASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNES  282 (343)
T ss_dssp             SCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTT
T ss_pred             CCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCC
Confidence            87 88888 999999999999999999999 55999999999877655432   1 223  46999999999999998 6


Q ss_pred             CCeEEEEEcC
Q 005656          398 QNGVYLWVNR  407 (685)
Q Consensus       398 ~~~I~lW~~~  407 (685)
                      + .|++|+..
T Consensus       283 ~-~i~v~~~~  291 (343)
T 3lrv_A          283 N-SLTIYKFD  291 (343)
T ss_dssp             T-EEEEEEEC
T ss_pred             C-cEEEEEEc
Confidence            5 99999853

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.97  E-value=2.1e-28  Score=279.30  Aligned_cols=338  Identities=7%  Similarity=0.049  Sum_probs=250.4

Q ss_pred             CcEEEEEEccCCCCEEEEEeC-CC-----cEEEEeCCCCeeeEEeeccccc------------------------CeeEE
Q 005656            3 GAVTALAFSSDGQPLLASGAS-SG-----VISIWNLEKRRLQSVIREAHDN------------------------AIISL   52 (685)
Q Consensus         3 ~~V~~l~fspdg~~~latg~~-dg-----~I~vwd~~~~~~~~~~~~~h~~------------------------~V~~l   52 (685)
                      ..|++++|||||+ +|++++. ||     .|++||+.+++....+. .|..                        .|.++
T Consensus        37 ~~~~~~~~SpdG~-~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           37 PTLMKPKVAPDGS-RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVD-SKVVLPGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCCEEEEECTTSS-EEEEEECCSSCTTEEEEEEEETTTCCEEEEEC-GGGTC--------------------CCEESCCC
T ss_pred             CCCCCceEecCCC-EEEEEeccCCCCcccEEEEEECCCCceeEccc-hhhcccccccccchhhhhhhhhhhccccCccee
Confidence            4689999999999 8888887 88     89999999998877765 4433                        38999


Q ss_pred             EEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEech
Q 005656           53 HFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQ  132 (685)
Q Consensus        53 ~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~  132 (685)
                      +|+|||++|++++. +.|++||+.++..  .....+..|...+.+++|+|||++|++++ ++.|++||+.+++.......
T Consensus       115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~--~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~  190 (741)
T 2ecf_A          115 QWSPDAQRLLFPLG-GELYLYDLKQEGK--AAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTAD  190 (741)
T ss_dssp             EECTTSSEEEEEET-TEEEEEESSSCST--TSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCC
T ss_pred             EECCCCCEEEEEeC-CcEEEEECCCCCc--ceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccC
Confidence            99999999999886 8999999876510  02334557788899999999999999887 56899999877654322110


Q ss_pred             hhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEcc
Q 005656          133 RHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA  212 (685)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  212 (685)
                      ..                 ..                 +..          ....     .+..   .....+.+++|||
T Consensus       191 ~~-----------------~~-----------------~~~----------g~~~-----~v~~---~~~~~~~~~~~Sp  218 (741)
T 2ecf_A          191 GS-----------------TT-----------------IGN----------GIAE-----FVAD---EEMDRHTGYWWAP  218 (741)
T ss_dssp             CC-----------------SS-----------------EEE----------SCCC-----HHHH---HHSCCCCSEEECT
T ss_pred             Cc-----------------cc-----------------eec----------cccc-----eeee---eccccccceEECC
Confidence            00                 00                 000          0000     0000   0012256789999


Q ss_pred             CCCEEEEEecCC---------------------------------cEEEEECCC-CccccccccccccccCCCCcCEEEE
Q 005656          213 CGNFAVLGTAGG---------------------------------WIERFNLQS-GISRGSYLDMSERSNYAHNGEVVGV  258 (685)
Q Consensus       213 ~g~~l~~g~~dg---------------------------------~i~~~d~~~-~~~~~~~~~~~~~~~~~h~~~v~~l  258 (685)
                      ||++|++++.++                                 .|++||+.+ +.......      ...|...+..+
T Consensus       219 Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~------~~~~~~~~~~~  292 (741)
T 2ecf_A          219 DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDL------GKEQDIYLARV  292 (741)
T ss_dssp             TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECC------CSCSSEEEEEE
T ss_pred             CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecC------CCCcceEEEEE
Confidence            999999987765                                 788999988 76543321      11477889999


Q ss_pred             EEcCCCCEEEEEEC-----CCeEEEEECCCCceEEEeecCC-----ceeEEEEeecCCEEEEEeCCCeEEEEEcC-CCee
Q 005656          259 ACDSTNTLMISAGY-----HGDIKVWDFKGRDLKSRWEVGC-----SLVKIVYHRVNGLLATVADDLVIRLFDVV-ALRM  327 (685)
Q Consensus       259 ~~~~~~~~l~s~s~-----dg~i~iwd~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~dg~I~i~d~~-~~~~  327 (685)
                      +| |+|++|++++.     ++.|++||+.+++....+..+.     .+..++|+|+|+++++++.||.++||.+. +++ 
T Consensus       293 ~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-  370 (741)
T 2ecf_A          293 NW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-  370 (741)
T ss_dssp             EE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-
T ss_pred             Ee-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-
Confidence            99 99999987764     5689999999998777665442     45689999999999999999987887765 445 


Q ss_pred             EEEEecCCCCeEEE-EEcCCCCEEEE-EeCCC--cEEEEEcCC-CceeeEEeeccceEEEEEcCCCCeEEEEEeCC---C
Q 005656          328 VRKFEGHTDRITDF-CFSEDGKWLLS-SGMDG--SLRIWDVIL-ARQIDAIHVDVSITALSLSPNMDVLATAHVDQ---N  399 (685)
Q Consensus       328 ~~~~~~h~~~I~~l-~~spdg~~l~s-~s~Dg--~I~iwd~~~-~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~---~  399 (685)
                      ...+..|...|..+ .|+|||++|+. ++.++  .+++|++.. +.....+.....+.+++|||||++|+....+.   .
T Consensus       371 ~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~  450 (741)
T 2ecf_A          371 AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSKAPGMHSASFARNASVYVDSWSNNSTPP  450 (741)
T ss_dssp             EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCCSCSEEEEEECTTSSEEEEEEEETTEEE
T ss_pred             eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecccCCCceEEEECCCCCEEEEEecCCCCCC
Confidence            78888888889887 59999997764 44555  899999874 66566666656689999999999998886653   2


Q ss_pred             eEEEEEc
Q 005656          400 GVYLWVN  406 (685)
Q Consensus       400 ~I~lW~~  406 (685)
                      .+++|+.
T Consensus       451 ~~~l~~~  457 (741)
T 2ecf_A          451 QIELFRA  457 (741)
T ss_dssp             EEEEEET
T ss_pred             eEEEEEc
Confidence            5788874

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.96  E-value=2.8e-27  Score=279.36  Aligned_cols=364  Identities=13%  Similarity=0.041  Sum_probs=266.3

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCC------CcEEEEeCCCCeeeEEeecccccCe-------eEEEEeCCCcEEEEecCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASS------GVISIWNLEKRRLQSVIREAHDNAI-------ISLHFFANEPVLMSASAD   67 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~d------g~I~vwd~~~~~~~~~~~~~h~~~V-------~~l~~sp~~~~l~s~s~D   67 (685)
                      |.+.|.+++|||||+ .||+++.+      +.|++||+.+++. ..+. .|...+       .+++|+|||+++++++.+
T Consensus        51 ~~~~v~~~~~SPDG~-~la~~s~~~~~~~~~~i~~~d~~~g~~-~~lt-~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~  127 (1045)
T 1k32_A           51 NLGVINNARFFPDGR-KIAIRVMRGSSLNTADLYFYNGENGEI-KRIT-YFSGKSTGRRMFTDVAGFDPDGNLIISTDAM  127 (1045)
T ss_dssp             SSSEEEEEEECTTSS-EEEEEEEESTTCCEEEEEEEETTTTEE-EECC-CCCEEEETTEECSEEEEECTTCCEEEEECTT
T ss_pred             CCCcccCeEECCCCC-EEEEEEeeccCCCCCeEEEEECCCCCe-EEcc-cCCCcccccccccccccCCCCCEEEEEECCc
Confidence            678899999999999 77776533      4799999998874 4555 788888       999999999988887755


Q ss_pred             ----C--cEEEEEecCCCCCC---------------------------------------------ceeEecccCCCCCe
Q 005656           68 ----N--SIKMWIFDTTDGDP---------------------------------------------RLLRFRSGHSAPPL   96 (685)
Q Consensus        68 ----~--~v~iWd~~~~~~~~---------------------------------------------~~~~~~~~h~~~v~   96 (685)
                          +  .|.+|++..+....                                             .....+.+|...+.
T Consensus       128 ~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~  207 (1045)
T 1k32_A          128 QPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVS  207 (1045)
T ss_dssp             SSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCE
T ss_pred             CCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCccc
Confidence                3  45566554331000                                             01122346788888


Q ss_pred             EEEEecCCCEEEEEeCCCceEEEEeecC-ceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEc
Q 005656           97 CIRFYANGRHILSAGQDRAFRLFSVIQD-QQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHM  175 (685)
Q Consensus        97 ~i~~~~~~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (685)
                      ++.|+++ ..+++++.|+.+++|.+... .....+...                .......++      .+...++..  
T Consensus       208 ~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~----------------~~~~~~~~S------pDG~~la~~--  262 (1045)
T 1k32_A          208 SPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSF----------------TDYYPRHLN------TDGRRILFS--  262 (1045)
T ss_dssp             EEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCC----------------CSSCEEEEE------ESSSCEEEE--
T ss_pred             ceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCC----------------CCcceeeEc------CCCCEEEEE--
Confidence            9999888 66677788899999987642 222222110                000111222      233444444  


Q ss_pred             CCceEEEEEcCccccCceeecCCC--------CCCCCeEEEEEc-cCCCEEEEEecCCcEEEEECCCCcccccccccccc
Q 005656          176 DTAQAYVWRLQNFVLGEHILRPCP--------ENPTAVKACTIS-ACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSER  246 (685)
Q Consensus       176 ~~~~~~~w~~~~~~~~~~~~~~~~--------~~~~~v~~~~~s-~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~  246 (685)
                      ..+.+++|+.......  .+....        .+...+.+++|+ |+|+++++++ ++.|++|++..+......      
T Consensus       263 ~~~~i~~~d~~~~~l~--~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~------  333 (1045)
T 1k32_A          263 KGGSIYIFNPDTEKIE--KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVP------  333 (1045)
T ss_dssp             ETTEEEEECTTTCCEE--ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECS------
T ss_pred             eCCEEEEecCCceEee--eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEcc------
Confidence            3678899987332221  111000        022368899999 9999999887 889999999887654321      


Q ss_pred             ccCCCCc-CEEEEEEcCCCCEEEEEECCCeEE-EEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCC
Q 005656          247 SNYAHNG-EVVGVACDSTNTLMISAGYHGDIK-VWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA  324 (685)
Q Consensus       247 ~~~~h~~-~v~~l~~~~~~~~l~s~s~dg~i~-iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~  324 (685)
                         .|.. .+..++|+ +|+.+++++.++.+. +||+.+++......+...+..++|+|+|++|++++.++.|++||+.+
T Consensus       334 ---~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~t  409 (1045)
T 1k32_A          334 ---EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET  409 (1045)
T ss_dssp             ---CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             ---CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCC
Confidence               5666 89999999 999999999888899 99998877655544447889999999999999999999999999999


Q ss_pred             CeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCC----------cEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEE
Q 005656          325 LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG----------SLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATA  394 (685)
Q Consensus       325 ~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg----------~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~  394 (685)
                      ++....+.+|.+.+.+++|||||++|++++.++          .|++||+.+++......+...+.+++|+|||++|+++
T Consensus       410 g~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~  489 (1045)
T 1k32_A          410 GKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYL  489 (1045)
T ss_dssp             CCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEE
T ss_pred             CceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEE
Confidence            998888888999999999999999999887654          8999999988743333344458899999999999999


Q ss_pred             EeCCCeEEEEEc
Q 005656          395 HVDQNGVYLWVN  406 (685)
Q Consensus       395 ~~d~~~I~lW~~  406 (685)
                      +.++ ...+|+.
T Consensus       490 s~~~-~~~~~~~  500 (1045)
T 1k32_A          490 SYRS-LDPSPDR  500 (1045)
T ss_dssp             ESCC-CCCEECS
T ss_pred             eccc-CCcCcch
Confidence            8775 6777764

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=7.7e-28  Score=237.17  Aligned_cols=221  Identities=14%  Similarity=0.018  Sum_probs=161.9

Q ss_pred             cccCeeEEEEeCC----CcEEEEecCCCcEEEEEecCCCCCCceeEe-cccCCCCCeEEEEecCCCEEEEEeCCCceEEE
Q 005656           45 HDNAIISLHFFAN----EPVLMSASADNSIKMWIFDTTDGDPRLLRF-RSGHSAPPLCIRFYANGRHILSAGQDRAFRLF  119 (685)
Q Consensus        45 h~~~V~~l~~sp~----~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~-~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vw  119 (685)
                      |...|++++|+||    ++++++++.+  +++|++..+    +++.. ..+|...|..++|+|+|+.+.+..        
T Consensus       110 ~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g----~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~--------  175 (356)
T 2w18_A          110 EIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKR----RLVSSSGTLSDQQVEVMTFAEDGGGKENQF--------  175 (356)
T ss_dssp             SEEEEEEECC------CCEEEEEEEEE--EEEEEETTT----EEEEEESSSTTCEEEEEEECTTSCEEEEEE--------
T ss_pred             cccceEEEEECCCccccccEEEeCCCe--EEEEecCCC----cEEEecccCCCCcEEEEEECCCCceeeeec--------
Confidence            5568999999999    9999998844  888977543    44444 355666666666666655444211        


Q ss_pred             EeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCC
Q 005656          120 SVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCP  199 (685)
Q Consensus       120 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  199 (685)
                                                                                                      
T Consensus       176 --------------------------------------------------------------------------------  175 (356)
T 2w18_A          176 --------------------------------------------------------------------------------  175 (356)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCeEEEEEcc---CCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEE---------
Q 005656          200 ENPTAVKACTISA---CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLM---------  267 (685)
Q Consensus       200 ~~~~~v~~~~~s~---~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l---------  267 (685)
                      .+...++.++|++   ++..+++|+.|++|++||+.+|+....+..     ...+...+.+++|+|+|.++         
T Consensus       176 ~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g-----~~~~v~~v~~vafSpdG~~lvs~s~~~~~  250 (356)
T 2w18_A          176 LMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHI-----DDSYQASVCHKAYSEMGLLFIVLSHPCAK  250 (356)
T ss_dssp             ECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEEC-----CC---CCCEEEEEEETTEEEEEEC-----
T ss_pred             cCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcC-----CCcceeeeEEEEECCCCCEEEEeccCCCc
Confidence            3456677888888   779999999999999999999998887741     00123478888999999876         


Q ss_pred             ---EEEECCCeEEEEECCCCceEEEee----cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeE-
Q 005656          268 ---ISAGYHGDIKVWDFKGRDLKSRWE----VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRIT-  339 (685)
Q Consensus       268 ---~s~s~dg~i~iwd~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~-  339 (685)
                         ++|+.|++|++||..+++.+..+.    .+.....+..+.++.++++++.|++|+|||+.+++++.++.+|...+. 
T Consensus       251 w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs  330 (356)
T 2w18_A          251 ESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWS  330 (356)
T ss_dssp             -------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCC
T ss_pred             ceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEE
Confidence               567889999999999998876552    111111233444478999999999999999999999999999987655 


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEc
Q 005656          340 DFCFSEDGKWLLSSGMDGSLRIWDV  364 (685)
Q Consensus       340 ~l~~spdg~~l~s~s~Dg~I~iwd~  364 (685)
                      .++|||||++|++|+.|++|+|||+
T Consensus       331 ~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          331 FVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EEEECCCCCEEEEEECCCcEEEecC
Confidence            6899999999999999999999995

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.95  E-value=1e-25  Score=265.97  Aligned_cols=386  Identities=9%  Similarity=-0.007  Sum_probs=262.4

Q ss_pred             CCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCC------CcEEEEEe
Q 005656            2 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD------NSIKMWIF   75 (685)
Q Consensus         2 ~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D------~~v~iWd~   75 (685)
                      .+.+.+.+|||  + .||.++. +.|++|++.+++.. .+. +|.+.+.+++|||||++|++++.+      ..|++|++
T Consensus        14 ~~~~~~~~~S~--~-~iaf~~~-~~l~~~~~~gg~~~-~lt-~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~   87 (1045)
T 1k32_A           14 PNLLLNPDIHG--D-RIIFVCC-DDLWEHDLKSGSTR-KIV-SNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNG   87 (1045)
T ss_dssp             CCCCEEEEEET--T-EEEEEET-TEEEEEETTTCCEE-EEE-CSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEET
T ss_pred             cceEeCcEEeC--C-EEEEEEC-CcEEEEECCCCcEE-Eee-eCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEEC
Confidence            46788999996  4 5666654 78999999888754 444 799999999999999999988643      37888887


Q ss_pred             cCCCCCCceeEecccCCCCC-------eEEEEecCCCEEEEEeCC----C--ceEEEEeecCceeeEechhhHHHHH---
Q 005656           76 DTTDGDPRLLRFRSGHSAPP-------LCIRFYANGRHILSAGQD----R--AFRLFSVIQDQQSRELSQRHVAKRA---  139 (685)
Q Consensus        76 ~~~~~~~~~~~~~~~h~~~v-------~~i~~~~~~~~l~s~s~d----g--~i~vwd~~~~~~~~~~~~~~~~~~~---  139 (685)
                      ..+    . ...+..|...+       ..++|+|||+.+++++.+    +  .|.+|++.++.... +.........   
T Consensus        88 ~~g----~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~-l~~~~~~~~~~sp  161 (1045)
T 1k32_A           88 ENG----E-IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP-LNLGPATHILFAD  161 (1045)
T ss_dssp             TTT----E-EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE-CCSCSCSEEEEET
T ss_pred             CCC----C-eEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEE-ecCCCcceeeeCC
Confidence            654    2 45567788777       899999999977777654    3  46777776654322 2111000000   


Q ss_pred             hhcccc--------------c--ccccc----Cceeeeec--cccccc--CCcceEEEEcCCceEEEEEcCccccCceee
Q 005656          140 RKLKMK--------------E--EELKL----KPVIAFDC--AEIRER--DWCNVVTCHMDTAQAYVWRLQNFVLGEHIL  195 (685)
Q Consensus       140 ~~~~~~--------------~--~~~~~----~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  195 (685)
                      ..+...              .  ..+-.    .....+..  ......  ..+.++.....++...+|.+.........+
T Consensus       162 G~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l  241 (1045)
T 1k32_A          162 GRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKH  241 (1045)
T ss_dssp             TEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEEC
T ss_pred             CEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEe
Confidence            000000              0  00000    00000000  000000  012455555556677777765322111222


Q ss_pred             cCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccccc---ccccCCCCcCEEEEEEc-CCCCEEEEEE
Q 005656          196 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMS---ERSNYAHNGEVVGVACD-STNTLMISAG  271 (685)
Q Consensus       196 ~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~---~~~~~~h~~~v~~l~~~-~~~~~l~s~s  271 (685)
                      .   .+ ..+...+|+|+|++++++ .++.|++||+..+... .+....   ......|...+.+++|+ |+|+.+++++
T Consensus       242 ~---~~-~~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~  315 (1045)
T 1k32_A          242 T---SF-TDYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS  315 (1045)
T ss_dssp             C---CC-CSSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE
T ss_pred             c---CC-CCcceeeEcCCCCEEEEE-eCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE
Confidence            1   22 245677999999999888 5899999999544332 221100   00001245578999999 9999998887


Q ss_pred             CCCeEEEEECCCCceEEEeecCC-ceeEEEEeecCCEEEEEeCCCeEE-EEEcCCCeeEEEEecCCCCeEEEEEcCCCCE
Q 005656          272 YHGDIKVWDFKGRDLKSRWEVGC-SLVKIVYHRVNGLLATVADDLVIR-LFDVVALRMVRKFEGHTDRITDFCFSEDGKW  349 (685)
Q Consensus       272 ~dg~i~iwd~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~I~-i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~  349 (685)
                       ++.|.+|+..++.......+.. .+..++|+ +|+.+++++.++.+. +||+.+++... +.+|...+..++|||||++
T Consensus       316 -~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~  392 (1045)
T 1k32_A          316 -RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKF  392 (1045)
T ss_dssp             -TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSE
T ss_pred             -cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCE
Confidence             7899999999887665444455 78999999 999999999888999 99998876544 4488889999999999999


Q ss_pred             EEEEeCCCcEEEEEcCCCceeeEEeec-cceEEEEEcCCCCeEEEEEeCC---------CeEEEEEcCC
Q 005656          350 LLSSGMDGSLRIWDVILARQIDAIHVD-VSITALSLSPNMDVLATAHVDQ---------NGVYLWVNRC  408 (685)
Q Consensus       350 l~s~s~Dg~I~iwd~~~~~~i~~~~~~-~~v~~v~~spdg~~Lat~~~d~---------~~I~lW~~~~  408 (685)
                      |++++.++.|++||+.+++.......+ ..+.+++|||||++|++++.++         ..|++|+...
T Consensus       393 la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~  461 (1045)
T 1k32_A          393 AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG  461 (1045)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT
T ss_pred             EEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC
Confidence            999999999999999999988777544 4489999999999999988754         4899998653

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.95  E-value=1.9e-25  Score=229.43  Aligned_cols=300  Identities=11%  Similarity=0.132  Sum_probs=211.1

Q ss_pred             EEEEEeCCCcEEEEeCC-CCe--eeEEeecccccCeeEEEEeCCCcEEEEecCC-CcEEEEEecCCCCCCceeEecccCC
Q 005656           17 LLASGASSGVISIWNLE-KRR--LQSVIREAHDNAIISLHFFANEPVLMSASAD-NSIKMWIFDTTDGDPRLLRFRSGHS   92 (685)
Q Consensus        17 ~latg~~dg~I~vwd~~-~~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D-~~v~iWd~~~~~~~~~~~~~~~~h~   92 (685)
                      ++++++.++.|.+||+. ++.  .+..+  .|...+.+++|+|++++|++++.+ +.|++|+++...+..+.+.....+.
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~   84 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVV--DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG   84 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeE--ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC
Confidence            55565789999999995 343  33333  578889999999999988888776 9999999984444434444444444


Q ss_pred             CCCeEEEEecCCCEEEEEeC-CCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceE
Q 005656           93 APPLCIRFYANGRHILSAGQ-DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVV  171 (685)
Q Consensus        93 ~~v~~i~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (685)
                       .+.+++|+|+|+++++++. ++.|.+||+..+........                                       
T Consensus        85 -~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~---------------------------------------  124 (343)
T 1ri6_A           85 -SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDV---------------------------------------  124 (343)
T ss_dssp             -CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEE---------------------------------------
T ss_pred             -CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccc---------------------------------------
Confidence             7899999999998877765 88899999952221111100                                       


Q ss_pred             EEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECCC-CccccccccccccccC
Q 005656          172 TCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-AGGWIERFNLQS-GISRGSYLDMSERSNY  249 (685)
Q Consensus       172 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~dg~i~~~d~~~-~~~~~~~~~~~~~~~~  249 (685)
                                             .    .....+.+++|+|+|+++++++ .++.|.+||+.+ +........   ....
T Consensus       125 -----------------------~----~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~---~~~~  174 (343)
T 1ri6_A          125 -----------------------V----EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPA---EVTT  174 (343)
T ss_dssp             -----------------------E----CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE---EEEC
T ss_pred             -----------------------c----cCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccc---cccc
Confidence                                   0    1233477889999999888887 889999999987 543221100   0011


Q ss_pred             CCCcCEEEEEEcCCCCEEEEEE-CCCeEEEEECCC--Cce--EEEee---c----CCceeEEEEeecCCEEEEE-eCCCe
Q 005656          250 AHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKG--RDL--KSRWE---V----GCSLVKIVYHRVNGLLATV-ADDLV  316 (685)
Q Consensus       250 ~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~--~~~--~~~~~---~----~~~i~~~~~~~~~~~l~~~-~~dg~  316 (685)
                      .....+.+++|+|+++++++++ .++.|.+|++..  ++.  .....   .    ...+..++|+|++++|+++ ..++.
T Consensus       175 ~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~  254 (343)
T 1ri6_A          175 VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASL  254 (343)
T ss_dssp             STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTE
T ss_pred             CCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCE
Confidence            2345788999999999776655 789999999953  433  22222   1    1346689999999977754 47899


Q ss_pred             EEEEEcC----CCeeEEEEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcC--CCce--eeEEeeccceEEEEEcCC
Q 005656          317 IRLFDVV----ALRMVRKFEGHTDRITDFCFSEDGKWLLSSG-MDGSLRIWDVI--LARQ--IDAIHVDVSITALSLSPN  387 (685)
Q Consensus       317 I~i~d~~----~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s-~Dg~I~iwd~~--~~~~--i~~~~~~~~v~~v~~spd  387 (685)
                      |.+||+.    +.+.+..+..+.. +.+++|+|+|++|++++ .++.|.+|++.  +++.  +..+.......+++|.|+
T Consensus       255 i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~~~~  333 (343)
T 1ri6_A          255 ITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAH  333 (343)
T ss_dssp             EEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECSSSCCEEEEEEE
T ss_pred             EEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccCCCCeeEEEEcc
Confidence            9999998    3455666665554 89999999999988887 68999999554  5643  444445455778888775


Q ss_pred             CC
Q 005656          388 MD  389 (685)
Q Consensus       388 g~  389 (685)
                      .+
T Consensus       334 ~~  335 (343)
T 1ri6_A          334 EG  335 (343)
T ss_dssp             C-
T ss_pred             cC
Confidence            43

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=4.1e-26  Score=248.11  Aligned_cols=294  Identities=10%  Similarity=0.025  Sum_probs=229.3

Q ss_pred             EEEEEEccCCCCEEEEEeCCCcEEEEeC--CCCeeeEEeecccccCeeEEEEeC----CCcEEEEecC-CCcEEEEEecC
Q 005656            5 VTALAFSSDGQPLLASGASSGVISIWNL--EKRRLQSVIREAHDNAIISLHFFA----NEPVLMSASA-DNSIKMWIFDT   77 (685)
Q Consensus         5 V~~l~fspdg~~~latg~~dg~I~vwd~--~~~~~~~~~~~~h~~~V~~l~~sp----~~~~l~s~s~-D~~v~iWd~~~   77 (685)
                      +.+++|+|||+ +|++++.|+.|.+||+  .+++.+..+.  +...+.+++|+|    ||++|++++. +++|.+||..+
T Consensus       181 ~~~v~~spdg~-~l~v~~~d~~V~v~D~~~~t~~~~~~i~--~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t  257 (543)
T 1nir_A          181 VHISRMSASGR-YLLVIGRDARIDMIDLWAKEPTKVAEIK--IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET  257 (543)
T ss_dssp             EEEEEECTTSC-EEEEEETTSEEEEEETTSSSCEEEEEEE--CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT
T ss_pred             cceEEECCCCC-EEEEECCCCeEEEEECcCCCCcEEEEEe--cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc
Confidence            78999999999 8999999999999999  8899888887  455689999999    9999998885 89999999876


Q ss_pred             CCCCCceeEeccc----------CCC-CCeEEEEecCCCE-EEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccc
Q 005656           78 TDGDPRLLRFRSG----------HSA-PPLCIRFYANGRH-ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK  145 (685)
Q Consensus        78 ~~~~~~~~~~~~~----------h~~-~v~~i~~~~~~~~-l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  145 (685)
                      .    +++..+..          |.. .+.++.++|++.. +++...++.|.+||+.+.+......              
T Consensus       258 ~----~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~--------------  319 (543)
T 1nir_A          258 L----EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTS--------------  319 (543)
T ss_dssp             C----CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEE--------------
T ss_pred             c----ccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEE--------------
Confidence            5    44544432          223 6889999997654 5566778999999987654322100              


Q ss_pred             ccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe-cCC
Q 005656          146 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-AGG  224 (685)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~dg  224 (685)
                                                                       +    .....+..++|+|+|++++++. .++
T Consensus       320 -------------------------------------------------i----~~~~~~~~~~~spdg~~l~va~~~~~  346 (543)
T 1nir_A          320 -------------------------------------------------I----GAAPFLHDGGWDSSHRYFMTAANNSN  346 (543)
T ss_dssp             -------------------------------------------------E----ECCSSCCCEEECTTSCEEEEEEGGGT
T ss_pred             -------------------------------------------------e----ccCcCccCceECCCCCEEEEEecCCC
Confidence                                                             0    1233466789999999877665 588


Q ss_pred             cEEEEECCCCccccccccccccccCCCCcCEEEEEEcCC-CCEEEEEE-CCCeEEEEECCC-------CceEEEeecC-C
Q 005656          225 WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMISAG-YHGDIKVWDFKG-------RDLKSRWEVG-C  294 (685)
Q Consensus       225 ~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~s-~dg~i~iwd~~~-------~~~~~~~~~~-~  294 (685)
                      .|.+||+.+++....+..    ....|.+....+ ++|+ +..++++. .|++|.+||+.+       .+.++++..+ .
T Consensus       347 ~v~v~D~~tg~l~~~i~~----g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~  421 (543)
T 1nir_A          347 KVAVIDSKDRRLSALVDV----GKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG  421 (543)
T ss_dssp             EEEEEETTTTEEEEEEEC----SSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS
T ss_pred             eEEEEECCCCeEEEeecc----CCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCC
Confidence            999999999987766531    111465544444 4677 56666665 589999999998       7888888865 5


Q ss_pred             ceeEEEEeecCCEEEEEe-------CCCeEEEEEcCCCeeE-EEE--------ecCCCCeEEEEEcCCCCEEEEEe----
Q 005656          295 SLVKIVYHRVNGLLATVA-------DDLVIRLFDVVALRMV-RKF--------EGHTDRITDFCFSEDGKWLLSSG----  354 (685)
Q Consensus       295 ~i~~~~~~~~~~~l~~~~-------~dg~I~i~d~~~~~~~-~~~--------~~h~~~I~~l~~spdg~~l~s~s----  354 (685)
                      .+..+.++|++++|++++       .+++|.+||+.+++.. ..+        ..+...+..+.|+|||++|+++.    
T Consensus       422 ~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~  501 (543)
T 1nir_A          422 GSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGK  501 (543)
T ss_dssp             CCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCT
T ss_pred             CceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCC
Confidence            678899999999999987       2679999999998876 444        35677899999999999988663    


Q ss_pred             -CCCcEEEEEcCCCceeeEEeecc
Q 005656          355 -MDGSLRIWDVILARQIDAIHVDV  377 (685)
Q Consensus       355 -~Dg~I~iwd~~~~~~i~~~~~~~  377 (685)
                       .|+.|.|||..+++++..++...
T Consensus       502 ~~~~~i~v~D~~t~~~~~~i~~~~  525 (543)
T 1nir_A          502 NDSSALVVVDDKTLKLKAVVKDPR  525 (543)
T ss_dssp             TSCCEEEEEETTTTEEEEEECCTT
T ss_pred             CCCCeEEEEECCCceEEEeecCCC
Confidence             47999999999999999887543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.95  E-value=1.7e-25  Score=228.83  Aligned_cols=282  Identities=9%  Similarity=0.065  Sum_probs=209.8

Q ss_pred             EEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecC-CCcEEEEEecCCCCCCce-e
Q 005656            8 LAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRL-L   85 (685)
Q Consensus         8 l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~-D~~v~iWd~~~~~~~~~~-~   85 (685)
                      ..|.+++..++++++.++.|.+||..+++....+. .+...+ +++|+|+++++++++. ++.|.+||..++    +. .
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~----~~~~   76 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQIT-LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLE----PPKV   76 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEE-CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSS----SCEE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEE-ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCC----ceeE
Confidence            45777777578888899999999999999988887 556666 9999999996665554 889999998876    33 5


Q ss_pred             EecccCCCCCeEEEEecCCCEEEEEeCCC---ceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccc
Q 005656           86 RFRSGHSAPPLCIRFYANGRHILSAGQDR---AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI  162 (685)
Q Consensus        86 ~~~~~h~~~v~~i~~~~~~~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (685)
                      .....+..+..+++|+|+|++++++..++   .|.+||+.+++....+.                               
T Consensus        77 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~-------------------------------  125 (331)
T 3u4y_A           77 VAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP-------------------------------  125 (331)
T ss_dssp             EEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE-------------------------------
T ss_pred             EecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE-------------------------------
Confidence            55556666666699999999999555553   89999998776544432                               


Q ss_pred             cccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEE-ecCCc-EEEEECCCCcccccc
Q 005656          163 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAGGW-IERFNLQSGISRGSY  240 (685)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~dg~-i~~~d~~~~~~~~~~  240 (685)
                                                            ......+++|+|+|++++++ ..++. |.+|++.........
T Consensus       126 --------------------------------------~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~  167 (331)
T 3u4y_A          126 --------------------------------------IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDT  167 (331)
T ss_dssp             --------------------------------------CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEE
T ss_pred             --------------------------------------CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeec
Confidence                                                  13346899999999866655 45588 999998864432211


Q ss_pred             ccccccccCCCCcCEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCce---EEEeecCCceeEEEEeecCCEEEEEe-CCC
Q 005656          241 LDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDL---KSRWEVGCSLVKIVYHRVNGLLATVA-DDL  315 (685)
Q Consensus       241 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg  315 (685)
                      ..    ....+...+.+++|+|+|+++++++ .++.|.+||+.+++.   +..+..+..+..++|+|+|+++++++ .++
T Consensus       168 ~~----~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~  243 (331)
T 3u4y_A          168 GQ----EFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTV  243 (331)
T ss_dssp             EE----EEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEE
T ss_pred             CC----ccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCC
Confidence            10    0113345689999999999665554 689999999999988   77888788889999999999776665 578


Q ss_pred             eEEEEEcCCCee--EEEEecC----CC---CeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCc
Q 005656          316 VIRLFDVVALRM--VRKFEGH----TD---RITDFCFSEDGKWLLSSG-MDGSLRIWDVILAR  368 (685)
Q Consensus       316 ~I~i~d~~~~~~--~~~~~~h----~~---~I~~l~~spdg~~l~s~s-~Dg~I~iwd~~~~~  368 (685)
                      .|.+||+.+++.  +..+..+    ..   ....++|+|||++|++++ .++.|.+||+....
T Consensus       244 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          244 DVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             EEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred             EEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence            899999999877  5544433    22   235689999999887655 56799999998654

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.95  E-value=8.4e-26  Score=256.25  Aligned_cols=328  Identities=9%  Similarity=0.054  Sum_probs=230.8

Q ss_pred             EEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeee-EEeecccc-----------------cCeeEEEEeCCCcEEEEecC
Q 005656            5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ-SVIREAHD-----------------NAIISLHFFANEPVLMSASA   66 (685)
Q Consensus         5 V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~-~~~~~~h~-----------------~~V~~l~~sp~~~~l~s~s~   66 (685)
                      +..+.|.  |. .+++++.+| | +||+.+++.+ ..+. .|.                 ..|.+++|+|| +.++.+ .
T Consensus        28 ~~~~~w~--g~-~~~~~~~~~-i-~~d~~tg~~~~~~l~-~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~   99 (706)
T 2z3z_A           28 VVGLQWM--GD-NYVFIEGDD-L-VFNKANGKSAQTTRF-SAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-T   99 (706)
T ss_dssp             CTTCEEE--TT-EEEEEETTE-E-EEEC-------CEEE-EHHHHHTTC-----------CCCEEEEETTT-TEEEEE-E
T ss_pred             CCCCcCc--CC-eEEEEeCCc-E-EEECCCCcEeeEEee-chhHhhhhccchhccccccccCceeEEECCC-CeEEEE-E
Confidence            3446777  55 456666677 8 9999999873 3443 333                 56999999999 555544 3


Q ss_pred             CCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeec-----CceeeEechhhHHHHHhh
Q 005656           67 DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ-----DQQSRELSQRHVAKRARK  141 (685)
Q Consensus        67 D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~-----~~~~~~~~~~~~~~~~~~  141 (685)
                      ++.|++||+.++    +.. .+..+...+.+++|+|||++|+++ .|+.|++|++.+     ++..........      
T Consensus       100 ~~~i~~~d~~~~----~~~-~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~------  167 (706)
T 2z3z_A          100 QGGLVGFDMLAR----KVT-YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTE------  167 (706)
T ss_dssp             TTEEEEEETTTT----EEE-EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBT------
T ss_pred             CCEEEEEECCCC----ceE-EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCC------
Confidence            599999998765    332 334567789999999999999985 689999999987     543322110000      


Q ss_pred             ccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe
Q 005656          142 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT  221 (685)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~  221 (685)
                                                 . +          .+...          ........+.+++|||||++|++++
T Consensus       168 ---------------------------~-~----------~~g~~----------~~~ee~~~~~~~~~SpDg~~la~~~  199 (706)
T 2z3z_A          168 ---------------------------T-L----------VYGQA----------VHQREFGIEKGTFWSPKGSCLAFYR  199 (706)
T ss_dssp             ---------------------------T-E----------EESSC----------CGGGCTTCCCSEEECTTSSEEEEEE
T ss_pred             ---------------------------C-e----------Ecccc----------hhhhhcCCCceEEECCCCCEEEEEE
Confidence                                       0 0          00000          0001234467899999999999987


Q ss_pred             ---------------------------------cCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEE
Q 005656          222 ---------------------------------AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMI  268 (685)
Q Consensus       222 ---------------------------------~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~  268 (685)
                                                       .++.|++||+.++.......      ...|...+.+++|+|+|+.|+
T Consensus       200 ~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~------~~~~~~~~~~~~~spdg~~l~  273 (706)
T 2z3z_A          200 MDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT------GEPKEKFLTNLSWSPDENILY  273 (706)
T ss_dssp             EECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC------CSCTTCEEEEEEECTTSSEEE
T ss_pred             ECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc------CCCCceeEeeEEEECCCCEEE
Confidence                                             44679999999887543321      125677899999999999999


Q ss_pred             EEECCC-----eEEEEECCCC-ceEEEeec--CC---ceeEEEEee--cCCEEEEEeCCCeEEEEEcC-CCeeEEEEecC
Q 005656          269 SAGYHG-----DIKVWDFKGR-DLKSRWEV--GC---SLVKIVYHR--VNGLLATVADDLVIRLFDVV-ALRMVRKFEGH  334 (685)
Q Consensus       269 s~s~dg-----~i~iwd~~~~-~~~~~~~~--~~---~i~~~~~~~--~~~~l~~~~~dg~I~i~d~~-~~~~~~~~~~h  334 (685)
                      +++.++     .|++||+.++ ........  ..   .+..+.|+|  +|++++++..|+.++||++. +++.+..+..|
T Consensus       274 ~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~  353 (706)
T 2z3z_A          274 VAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKG  353 (706)
T ss_dssp             EEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCS
T ss_pred             EEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCC
Confidence            988775     8999999998 43333322  11   246789999  99999999999999999887 67778888888


Q ss_pred             CCCeEE-EEEcCCCCEEEEEeC-CC----cEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCC---CeEEEEE
Q 005656          335 TDRITD-FCFSEDGKWLLSSGM-DG----SLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ---NGVYLWV  405 (685)
Q Consensus       335 ~~~I~~-l~~spdg~~l~s~s~-Dg----~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~---~~I~lW~  405 (685)
                      ...+.. ++|+|||++|+.++. ++    .|..||+.+++ ...+.....+.+++|||||++++.++.+.   ..|++|+
T Consensus       354 ~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d  432 (706)
T 2z3z_A          354 EWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTN  432 (706)
T ss_dssp             SSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEE
T ss_pred             CeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEE
Confidence            888887 799999998876654 44    67777777765 44445555699999999999998886653   3699998


Q ss_pred             cC
Q 005656          406 NR  407 (685)
Q Consensus       406 ~~  407 (685)
                      ..
T Consensus       433 ~~  434 (706)
T 2z3z_A          433 IG  434 (706)
T ss_dssp             SS
T ss_pred             CC
Confidence            64

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.95  E-value=1e-26  Score=264.69  Aligned_cols=336  Identities=11%  Similarity=0.070  Sum_probs=230.8

Q ss_pred             cEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeeccccc---CeeEEEEeCCCcEEEEecCC---------CcEE
Q 005656            4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDN---AIISLHFFANEPVLMSASAD---------NSIK   71 (685)
Q Consensus         4 ~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~---~V~~l~~sp~~~~l~s~s~D---------~~v~   71 (685)
                      .+.+++|+|||+ ++++ +.||.|++||+.+++....+. +|..   .|.+++|||||++|++++.+         +.+.
T Consensus        18 ~~~~~~~spdg~-~~~~-~~dg~i~~~d~~~g~~~~~~~-~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~   94 (723)
T 1xfd_A           18 HDPEAKWISDTE-FIYR-EQKGTVRLWNVETNTSTVLIE-GKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV   94 (723)
T ss_dssp             CCCCCCBSSSSC-BCCC-CSSSCEEEBCGGGCCCEEEEC-TTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred             cccccEEcCCCc-EEEE-eCCCCEEEEECCCCcEEEEec-cccccccccceEEECCCCCEEEEEecCccceeecceeeEE
Confidence            467889999999 7776 689999999999998887776 6665   49999999999999998764         6788


Q ss_pred             EEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccccccccc
Q 005656           72 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL  151 (685)
Q Consensus        72 iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (685)
                      +||++++..  +.+....+|...+..++|+|||+.|++++. +.|++|++.+++..........                
T Consensus        95 ~~d~~~~~~--~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~----------------  155 (723)
T 1xfd_A           95 LSKIPHGDP--QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKE----------------  155 (723)
T ss_dssp             EEESSSCCC--EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBT----------------
T ss_pred             EEECCCCce--EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCC----------------
Confidence            999887632  334444456667999999999999999886 7899999987665433211000                


Q ss_pred             CceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCC-------
Q 005656          152 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG-------  224 (685)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg-------  224 (685)
                                       .++..+..     -|-..     +       .....+.+++|||||++|++++.++       
T Consensus       156 -----------------~~~~~g~~-----~~v~~-----e-------e~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~  201 (723)
T 1xfd_A          156 -----------------GVIYNGLS-----DWLYE-----E-------EILKTHIAHWWSPDGTRLAYAAINDSRVPIME  201 (723)
T ss_dssp             -----------------TTEEEEEC-----CHHHH-----H-------TTSSSSEEEEECTTSSEEEEEEEECTTSCEEE
T ss_pred             -----------------CceECccc-----ceeEE-----E-------EeccCcceEEECCCCCEEEEEEECCCccceEE
Confidence                             00000000     00000     0       0112457888999999888876543       


Q ss_pred             ---------------------------cEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC----C
Q 005656          225 ---------------------------WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY----H  273 (685)
Q Consensus       225 ---------------------------~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~----d  273 (685)
                                                 .|++||+.++.....+....  ....+...+..++|+|+|+++++.+.    +
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~--~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~  279 (723)
T 1xfd_A          202 LPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPD--DPRMREYYITMVKWATSTKVAVTWLNRAQNV  279 (723)
T ss_dssp             ECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCC--CGGGSSEEEEEEEESSSSEEEEEEEETTSCE
T ss_pred             eeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCc--cCCCccceeEEEEEeCCCeEEEEEEcCCCCe
Confidence                                       79999998887543332100  01134678999999999998877653    3


Q ss_pred             CeEEEEECCCCceEEEeecC--Cce----eEEEEeecCCEEEE--EeCCC------eEEEEE-cCCCe--eEEEEecCCC
Q 005656          274 GDIKVWDFKGRDLKSRWEVG--CSL----VKIVYHRVNGLLAT--VADDL------VIRLFD-VVALR--MVRKFEGHTD  336 (685)
Q Consensus       274 g~i~iwd~~~~~~~~~~~~~--~~i----~~~~~~~~~~~l~~--~~~dg------~I~i~d-~~~~~--~~~~~~~h~~  336 (685)
                      ..|++||+.+++....+...  ..+    ..++|+|+|+.|+.  +..++      .|++|| ..+++  +...+..+..
T Consensus       280 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~  359 (723)
T 1xfd_A          280 SILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDW  359 (723)
T ss_dssp             EEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSS
T ss_pred             EEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCe
Confidence            57999999998876655332  333    37899999996664  45566      577777 34444  1455554444


Q ss_pred             CeEE-EEEcCCCCEEEEEeCC---CcEEEEEcCCCc--eeeEEee----ccceEEEEEcCCCCeEEEEEeC
Q 005656          337 RITD-FCFSEDGKWLLSSGMD---GSLRIWDVILAR--QIDAIHV----DVSITALSLSPNMDVLATAHVD  397 (685)
Q Consensus       337 ~I~~-l~~spdg~~l~s~s~D---g~I~iwd~~~~~--~i~~~~~----~~~v~~v~~spdg~~Lat~~~d  397 (685)
                      .+.. ++|+|||++|+..+.+   +.+++|++....  ....+..    ...+..++|||||++|+.....
T Consensus       360 ~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~  430 (723)
T 1xfd_A          360 DVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEG  430 (723)
T ss_dssp             CEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCS
T ss_pred             EEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccC
Confidence            5554 6999999999876655   789999987532  3333332    3348899999999999887654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=3.4e-26  Score=241.32  Aligned_cols=278  Identities=12%  Similarity=0.019  Sum_probs=215.7

Q ss_pred             ccCeeEEEEeCCCc-EEEEec----CCC----cEEEEEe--cCCCCCCcee--EecccCCCCCeEEEEec----------
Q 005656           46 DNAIISLHFFANEP-VLMSAS----ADN----SIKMWIF--DTTDGDPRLL--RFRSGHSAPPLCIRFYA----------  102 (685)
Q Consensus        46 ~~~V~~l~~sp~~~-~l~s~s----~D~----~v~iWd~--~~~~~~~~~~--~~~~~h~~~v~~i~~~~----------  102 (685)
                      ...+....|.+.+. ++++|+    .||    ++++||+  .++    +.+  ..+.+|...+..+++++          
T Consensus        62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g  137 (415)
T 2hqs_A           62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPG----TVLAQNSYKVNKQWLRYAGHTASDEVFEKLTG  137 (415)
T ss_dssp             GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTT----CEEEEEEEEECGGGHHHHHHHHHHHHHHHHHS
T ss_pred             ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCC----CEEeeeEEEcChhHHHHHHHHHHHHHHHHHcC
Confidence            34677888888775 666775    467    8999999  665    333  45678888888777764          


Q ss_pred             ----CCCEEEEEeCC------CceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEE
Q 005656          103 ----NGRHILSAGQD------RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVT  172 (685)
Q Consensus       103 ----~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (685)
                          .+..++.++.+      +.|++||+.... ...+.                                         
T Consensus       138 ~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l~-----------------------------------------  175 (415)
T 2hqs_A          138 IKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QFVVH-----------------------------------------  175 (415)
T ss_dssp             SCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CEEEE-----------------------------------------
T ss_pred             CCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CEEEe-----------------------------------------
Confidence                15566666654      789999986432 22221                                         


Q ss_pred             EEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCC---cEEEEECCCCccccccccccccccC
Q 005656          173 CHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG---WIERFNLQSGISRGSYLDMSERSNY  249 (685)
Q Consensus       173 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg---~i~~~d~~~~~~~~~~~~~~~~~~~  249 (685)
                                                 .+...+.+++|+|+|+++++++.++   .|++||+.+++.....         
T Consensus       176 ---------------------------~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~---------  219 (415)
T 2hqs_A          176 ---------------------------RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA---------  219 (415)
T ss_dssp             ---------------------------EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE---------
T ss_pred             ---------------------------CCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEee---------
Confidence                                       3456799999999999999998875   9999999998765322         


Q ss_pred             CCCcCEEEEEEcCCCCEEE-EEECCCe--EEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeC-CC--eEEEEEcC
Q 005656          250 AHNGEVVGVACDSTNTLMI-SAGYHGD--IKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVAD-DL--VIRLFDVV  323 (685)
Q Consensus       250 ~h~~~v~~l~~~~~~~~l~-s~s~dg~--i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~I~i~d~~  323 (685)
                      .|.+.+.+++|+|+|+.|+ +++.++.  |++||+.+++......+...+.+++|+|+|+.|++++. ++  .|++||+.
T Consensus       220 ~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~  299 (415)
T 2hqs_A          220 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN  299 (415)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred             cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECC
Confidence            6778999999999999887 5665554  99999999887655556678999999999998888876 44  78888998


Q ss_pred             CCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCCC-
Q 005656          324 ALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD---GSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQN-  399 (685)
Q Consensus       324 ~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~D---g~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~-  399 (685)
                      +++. ..+..|...+.+++|+|||++|++++.+   +.|++||+.+++.. .+..+..+.+++|+|+|++|++++.+++ 
T Consensus       300 ~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~spdg~~l~~~s~~~~~  377 (415)
T 2hqs_A          300 GGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTFLDETPSLAPNGTMVIYSSSQGMG  377 (415)
T ss_dssp             SSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSSSCEEEEECTTSSEEEEEEEETTE
T ss_pred             CCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCCCcCCeEEcCCCCEEEEEEcCCCc
Confidence            8874 4456677889999999999999988764   58999999998874 3444447999999999999999998875 


Q ss_pred             -eEEEEEcC
Q 005656          400 -GVYLWVNR  407 (685)
Q Consensus       400 -~I~lW~~~  407 (685)
                       .|++|+..
T Consensus       378 ~~l~~~d~~  386 (415)
T 2hqs_A          378 SVLNLVSTD  386 (415)
T ss_dssp             EEEEEEETT
T ss_pred             cEEEEEECC
Confidence             68888753

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.94  E-value=8.3e-24  Score=218.22  Aligned_cols=269  Identities=11%  Similarity=0.092  Sum_probs=206.3

Q ss_pred             CcEEEEEEccCCCCEEEEEeC-------CCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEE-EEecCCCcEEEEE
Q 005656            3 GAVTALAFSSDGQPLLASGAS-------SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL-MSASADNSIKMWI   74 (685)
Q Consensus         3 ~~V~~l~fspdg~~~latg~~-------dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l-~s~s~D~~v~iWd   74 (685)
                      +.+..++|+|+|+ .+++++.       ++.|.+||..+++....+.  ....+.+++|+|+++++ ++...++.|.+||
T Consensus        41 ~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d  117 (353)
T 3vgz_A           41 KGAYEMAYSQQEN-ALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--NDLKPFGATINNTTQTLWFGNTVNSAVTAID  117 (353)
T ss_dssp             SSEEEEEEETTTT-EEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--ESSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             cCccceEECCCCC-EEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--cCCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence            4578999999998 5666553       5689999999999888886  34558899999999854 5556689999999


Q ss_pred             ecCCCCCCceeEecccCCCC---------CeEEEEecCCCEEEEEe--CCCceEEEEeecCceeeEechhhHHHHHhhcc
Q 005656           75 FDTTDGDPRLLRFRSGHSAP---------PLCIRFYANGRHILSAG--QDRAFRLFSVIQDQQSRELSQRHVAKRARKLK  143 (685)
Q Consensus        75 ~~~~~~~~~~~~~~~~h~~~---------v~~i~~~~~~~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  143 (685)
                      ..++    +.+..+..+...         +.+++|+|+|+++++++  .++.|.+||..+++....+.            
T Consensus       118 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~------------  181 (353)
T 3vgz_A          118 AKTG----EVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ------------  181 (353)
T ss_dssp             TTTC----CEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC------------
T ss_pred             CCCC----eeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec------------
Confidence            8776    444444333221         57788888888777665  36677777765443322210            


Q ss_pred             ccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecC
Q 005656          144 MKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG  223 (685)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d  223 (685)
                                                                                                      
T Consensus       182 --------------------------------------------------------------------------------  181 (353)
T 3vgz_A          182 --------------------------------------------------------------------------------  181 (353)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec-----CCceeE
Q 005656          224 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV-----GCSLVK  298 (685)
Q Consensus       224 g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----~~~i~~  298 (685)
                                                .+...+.+++|+|+++++++++.++.|.+||..+++....+..     ...+..
T Consensus       182 --------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  235 (353)
T 3vgz_A          182 --------------------------NTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFIN  235 (353)
T ss_dssp             --------------------------CCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEE
T ss_pred             --------------------------CCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccce
Confidence                                      1223355678888888888888888899999888887777664     245778


Q ss_pred             EEEeecCCEEEEEeC-CCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCceeeEEeec
Q 005656          299 IVYHRVNGLLATVAD-DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG-MDGSLRIWDVILARQIDAIHVD  376 (685)
Q Consensus       299 ~~~~~~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s-~Dg~I~iwd~~~~~~i~~~~~~  376 (685)
                      ++|+|+++++++++. ++.|.+||+.+++.+..+..+.  ...++|+|+|++++.++ .++.|.+||+.+++.+..+...
T Consensus       236 ~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~  313 (353)
T 3vgz_A          236 ISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP  313 (353)
T ss_dssp             EEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC
Confidence            999999997777665 4899999999999988887544  26799999999766555 7899999999999999999888


Q ss_pred             cceEEEEEcCCCCeEEEEEeCC
Q 005656          377 VSITALSLSPNMDVLATAHVDQ  398 (685)
Q Consensus       377 ~~v~~v~~spdg~~Lat~~~d~  398 (685)
                      ..+.+++|+|+|++|++++.++
T Consensus       314 ~~~~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          314 THPNSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             SEEEEEEECTTSCEEEEEEECC
T ss_pred             CCCCeEEEcCCCCEEEEEEccc
Confidence            8899999999999888887764

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.93  E-value=4.3e-24  Score=218.41  Aligned_cols=273  Identities=8%  Similarity=0.051  Sum_probs=202.8

Q ss_pred             EEeCCCc-EEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeC-CCceEEEEeecCce-eeE
Q 005656           53 HFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ-DRAFRLFSVIQDQQ-SRE  129 (685)
Q Consensus        53 ~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~-dg~i~vwd~~~~~~-~~~  129 (685)
                      .|.++++ .+++++.++.|.+||..++    +.......+...+ +++|+|+|+++++++. ++.|.+||+.+++. ...
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~----~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~   78 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTL----EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVA   78 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTC----CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEE
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCccc----ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEe
Confidence            4555554 5778888999999998876    4555544555666 9999999997777766 88999999987764 322


Q ss_pred             echhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEE
Q 005656          130 LSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACT  209 (685)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~  209 (685)
                      +.                                                                    .+..+..+++
T Consensus        79 ~~--------------------------------------------------------------------~~~~~~~~~~   90 (331)
T 3u4y_A           79 IQ--------------------------------------------------------------------EGQSSMADVD   90 (331)
T ss_dssp             EE--------------------------------------------------------------------ECSSCCCCEE
T ss_pred             cc--------------------------------------------------------------------cCCCCccceE
Confidence            21                                                                    1223333489


Q ss_pred             EccCCCEEEEEecCC---cEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEE-ECCCe-EEEEECCCC
Q 005656          210 ISACGNFAVLGTAGG---WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA-GYHGD-IKVWDFKGR  284 (685)
Q Consensus       210 ~s~~g~~l~~g~~dg---~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-s~dg~-i~iwd~~~~  284 (685)
                      |+|+|++++++..++   .|.+||+.++.....+         .+.....+++|+|+|++++++ ..++. |.+|++...
T Consensus        91 ~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~---------~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~  161 (331)
T 3u4y_A           91 ITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTI---------PIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDAD  161 (331)
T ss_dssp             ECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEE---------ECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTT
T ss_pred             ECCCCCEEEEecCCCCcccEEEEECCCCCeEEEE---------ECCCCccceEECCCCCEEEEEecCCCceEEEEEECCC
Confidence            999999999666653   8999999998876655         334456899999999866555 55578 999998754


Q ss_pred             ceE-----EEeecCCceeEEEEeecCCEEEEE-eCCCeEEEEEcCCCee---EEEEecCCCCeEEEEEcCCCCEEEEEe-
Q 005656          285 DLK-----SRWEVGCSLVKIVYHRVNGLLATV-ADDLVIRLFDVVALRM---VRKFEGHTDRITDFCFSEDGKWLLSSG-  354 (685)
Q Consensus       285 ~~~-----~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~I~i~d~~~~~~---~~~~~~h~~~I~~l~~spdg~~l~s~s-  354 (685)
                      ..+     ..+........++|+|+|++++++ ..++.|++||+.+++.   +..+..+ ..+..++|+|||++|+.++ 
T Consensus       162 g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~  240 (331)
T 3u4y_A          162 GVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTE  240 (331)
T ss_dssp             CCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECS
T ss_pred             CcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEc
Confidence            332     233345678999999999966555 4689999999999988   7777744 6678999999999877665 


Q ss_pred             CCCcEEEEEcCCCce--eeEEeec-----cc---eEEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656          355 MDGSLRIWDVILARQ--IDAIHVD-----VS---ITALSLSPNMDVLATAHVDQNGVYLWVNRC  408 (685)
Q Consensus       355 ~Dg~I~iwd~~~~~~--i~~~~~~-----~~---v~~v~~spdg~~Lat~~~d~~~I~lW~~~~  408 (685)
                      .++.|.+||+.+++.  +..+...     .+   +.+++|+|||++|++++.+++.|++|+...
T Consensus       241 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~  304 (331)
T 3u4y_A          241 STVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISG  304 (331)
T ss_dssp             SEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred             CCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence            578899999999887  4433322     11   356899999999999888878999999653

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.93  E-value=3e-24  Score=244.97  Aligned_cols=278  Identities=11%  Similarity=0.069  Sum_probs=212.7

Q ss_pred             ccCeeEEEEeCCCcEEEEecC-CC-----cEEEEEecCCCCCCceeEecccCC------------------------CCC
Q 005656           46 DNAIISLHFFANEPVLMSASA-DN-----SIKMWIFDTTDGDPRLLRFRSGHS------------------------APP   95 (685)
Q Consensus        46 ~~~V~~l~~sp~~~~l~s~s~-D~-----~v~iWd~~~~~~~~~~~~~~~~h~------------------------~~v   95 (685)
                      ...|.+++|+|||++|++++. |+     +|++||+.++    +.......+.                        ..|
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  111 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSG----QTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGI  111 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTC----CEEEEECGGGTC--------------------CCEES
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCC----ceeEccchhhcccccccccchhhhhhhhhhhccccCc
Confidence            457999999999999999998 88     8999998775    3333333332                        238


Q ss_pred             eEEEEecCCCEEEEEeCCCceEEEEeecCc--eeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEE
Q 005656           96 LCIRFYANGRHILSAGQDRAFRLFSVIQDQ--QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTC  173 (685)
Q Consensus        96 ~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (685)
                      .+++|+|||++|++++. +.|++||+.++.  ....+                                           
T Consensus       112 ~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l-------------------------------------------  147 (741)
T 2ecf_A          112 VDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQL-------------------------------------------  147 (741)
T ss_dssp             CCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBC-------------------------------------------
T ss_pred             ceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEc-------------------------------------------
Confidence            89999999999999886 899999987652  11111                                           


Q ss_pred             EcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCc
Q 005656          174 HMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNG  253 (685)
Q Consensus       174 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~  253 (685)
                                               ..+...+..++|||+|+++++++. +.|++||+.++.......        .+..
T Consensus       148 -------------------------~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~--------~~~~  193 (741)
T 2ecf_A          148 -------------------------THGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTA--------DGST  193 (741)
T ss_dssp             -------------------------CCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCC--------CCCS
T ss_pred             -------------------------ccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEecc--------CCcc
Confidence                                     134567899999999999998874 689999999887654332        2222


Q ss_pred             ----------------CEEEEEEcCCCCEEEEEECCC---------------------------------eEEEEECCC-
Q 005656          254 ----------------EVVGVACDSTNTLMISAGYHG---------------------------------DIKVWDFKG-  283 (685)
Q Consensus       254 ----------------~v~~l~~~~~~~~l~s~s~dg---------------------------------~i~iwd~~~-  283 (685)
                                      .+.+++|+|+|++|++++.|+                                 .|++||+.+ 
T Consensus       194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~  273 (741)
T 2ecf_A          194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ  273 (741)
T ss_dssp             SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred             ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence                            247899999999999988765                                 889999988 


Q ss_pred             CceEEEe---ecCCceeEEEEeecCCEEEEEeC-----CCeEEEEEcCCCeeEEEEecCCC----CeEEEEEcCCCCEEE
Q 005656          284 RDLKSRW---EVGCSLVKIVYHRVNGLLATVAD-----DLVIRLFDVVALRMVRKFEGHTD----RITDFCFSEDGKWLL  351 (685)
Q Consensus       284 ~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~-----dg~I~i~d~~~~~~~~~~~~h~~----~I~~l~~spdg~~l~  351 (685)
                      ++.....   .+...+..++| |||+.|++++.     +..|++||+.+++....+..|..    .+..++|+|||++++
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~  352 (741)
T 2ecf_A          274 AQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILW  352 (741)
T ss_dssp             CCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEE
T ss_pred             CceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEE
Confidence            7765543   23467899999 99998887764     56899999999988877776553    456899999999999


Q ss_pred             EEeCCCcEEEEEcC-CCceeeEEeec-cceEEE-EEcCCCCeEEEEEeCCC--eEEEEEcC
Q 005656          352 SSGMDGSLRIWDVI-LARQIDAIHVD-VSITAL-SLSPNMDVLATAHVDQN--GVYLWVNR  407 (685)
Q Consensus       352 s~s~Dg~I~iwd~~-~~~~i~~~~~~-~~v~~v-~~spdg~~Lat~~~d~~--~I~lW~~~  407 (685)
                      +++.||.+++|.+. ++. ...+..+ ..+.++ .|+|+|+.|++++.+++  .++||...
T Consensus       353 ~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~  412 (741)
T 2ecf_A          353 SSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVP  412 (741)
T ss_dssp             EECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred             EecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence            99999988888776 444 5555443 448777 59999998877766654  68899753

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.93  E-value=3.4e-24  Score=220.07  Aligned_cols=269  Identities=11%  Similarity=0.152  Sum_probs=194.4

Q ss_pred             EEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCC-CceEEEEee--cCceeeEechhhHH
Q 005656           60 VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD-RAFRLFSVI--QDQQSRELSQRHVA  136 (685)
Q Consensus        60 ~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-g~i~vwd~~--~~~~~~~~~~~~~~  136 (685)
                      ++++++.|+.|++|+++. .+..+.+.. ..|...+.+++|+|+|++|++++.+ +.|++|++.  ++.......     
T Consensus         7 l~~~~~~~~~v~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~-----   79 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNH-EGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAE-----   79 (343)
T ss_dssp             EEEEEGGGTEEEEEEECT-TSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE-----
T ss_pred             EEEeCCCCCeEEEEEECC-CCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccc-----
Confidence            445557899999999975 222233333 3577889999999999999998886 999999997  332211100     


Q ss_pred             HHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCE
Q 005656          137 KRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNF  216 (685)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  216 (685)
                                                                                .    .....+..++|+|+|++
T Consensus        80 ----------------------------------------------------------~----~~~~~~~~~~~s~dg~~   97 (343)
T 1ri6_A           80 ----------------------------------------------------------S----ALPGSLTHISTDHQGQF   97 (343)
T ss_dssp             ----------------------------------------------------------E----ECSSCCSEEEECTTSSE
T ss_pred             ----------------------------------------------------------c----ccCCCCcEEEEcCCCCE
Confidence                                                                      0    11225778999999998


Q ss_pred             EEEEec-CCcEEEEECCCC---ccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE-CCCeEEEEECCC-CceEEE-
Q 005656          217 AVLGTA-GGWIERFNLQSG---ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKG-RDLKSR-  289 (685)
Q Consensus       217 l~~g~~-dg~i~~~d~~~~---~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~-~~~~~~-  289 (685)
                      +++++. ++.|.+||+..+   .....+         .....+.+++|+|+++++++++ .++.|++||+.+ ++.... 
T Consensus        98 l~~~~~~~~~i~~~d~~~~~~~~~~~~~---------~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~  168 (343)
T 1ri6_A           98 VFVGSYNAGNVSVTRLEDGLPVGVVDVV---------EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQD  168 (343)
T ss_dssp             EEEEETTTTEEEEEEEETTEEEEEEEEE---------CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEE
T ss_pred             EEEEecCCCeEEEEECCCCccccccccc---------cCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeec
Confidence            877665 888999999533   222222         2334588999999999888887 899999999987 655321 


Q ss_pred             ---e--ecCCceeEEEEeecCCEEEEEe-CCCeEEEEEcCC--Cee--EEEEe----cC--CCCeEEEEEcCCCCEEEE-
Q 005656          290 ---W--EVGCSLVKIVYHRVNGLLATVA-DDLVIRLFDVVA--LRM--VRKFE----GH--TDRITDFCFSEDGKWLLS-  352 (685)
Q Consensus       290 ---~--~~~~~i~~~~~~~~~~~l~~~~-~dg~I~i~d~~~--~~~--~~~~~----~h--~~~I~~l~~spdg~~l~s-  352 (685)
                         .  .....+..++|+|+++++++++ .++.|.+||+..  ++.  ...+.    ++  ...+..++|+|+|++|++ 
T Consensus       169 ~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~  248 (343)
T 1ri6_A          169 PAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYAC  248 (343)
T ss_dssp             EEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEE
T ss_pred             ccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEE
Confidence               2  2335788899999999776554 789999999953  433  33333    11  235778999999998874 


Q ss_pred             EeCCCcEEEEEcC--C--CceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656          353 SGMDGSLRIWDVI--L--ARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       353 ~s~Dg~I~iwd~~--~--~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~  406 (685)
                      +..++.|++||+.  +  .+.+..+..+..+.+++|+|+|++|++++.+++.|.+|+.
T Consensus       249 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~  306 (343)
T 1ri6_A          249 DRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEI  306 (343)
T ss_dssp             ETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred             ecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEE
Confidence            4578999999998  3  3455555555569999999999999999865569999964

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.93  E-value=6.5e-24  Score=212.70  Aligned_cols=254  Identities=9%  Similarity=0.004  Sum_probs=193.7

Q ss_pred             EEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecC-CCCCCceeEecccC-CCCCeE
Q 005656           20 SGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT-TDGDPRLLRFRSGH-SAPPLC   97 (685)
Q Consensus        20 tg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~-~~~~~~~~~~~~~h-~~~v~~   97 (685)
                      .++.++.|++||+.+++.....  .|...|.+++|+|++++|++++ ++.|++||+.. +    +......+| ...+.+
T Consensus        17 ~~~~~~~i~~~d~~~~~~~~~~--~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~----~~~~~~~~~~~~~~~~   89 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMRVVW--QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDP----SPEKVDTGFATICNND   89 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEEEEE--EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCC----SCEECCCTTCCCBCSC
T ss_pred             CCCcceeEEEEeCCCCceeeec--cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCC----CceEeccccccccccc
Confidence            3467899999999999877544  5899999999999999999986 78999999887 5    334444455 477899


Q ss_pred             EEEecCCCEEEEEe--CCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEc
Q 005656           98 IRFYANGRHILSAG--QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHM  175 (685)
Q Consensus        98 i~~~~~~~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (685)
                      ++|+|+|++|++++  .++..++|.+...                                                   
T Consensus        90 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~---------------------------------------------------  118 (297)
T 2ojh_A           90 HGISPDGALYAISDKVEFGKSAIYLLPST---------------------------------------------------  118 (297)
T ss_dssp             CEECTTSSEEEEEECTTTSSCEEEEEETT---------------------------------------------------
T ss_pred             eEECCCCCEEEEEEeCCCCcceEEEEECC---------------------------------------------------
Confidence            99999999999988  4456666665321                                                   


Q ss_pred             CCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCE
Q 005656          176 DTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEV  255 (685)
Q Consensus       176 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v  255 (685)
                                                                               ++... .+         .+...+
T Consensus       119 ---------------------------------------------------------~~~~~-~~---------~~~~~~  131 (297)
T 2ojh_A          119 ---------------------------------------------------------GGTPR-LM---------TKNLPS  131 (297)
T ss_dssp             ---------------------------------------------------------CCCCE-EC---------CSSSSE
T ss_pred             ---------------------------------------------------------CCceE-Ee---------ecCCCc
Confidence                                                                     11100 00         122237


Q ss_pred             EEEEEcCCCCEEE-EEECCCeEEEEEC--CCCceEEEeecCCceeEEEEeecCCEEEEEe-CCCeEEEEEcC-CCeeEEE
Q 005656          256 VGVACDSTNTLMI-SAGYHGDIKVWDF--KGRDLKSRWEVGCSLVKIVYHRVNGLLATVA-DDLVIRLFDVV-ALRMVRK  330 (685)
Q Consensus       256 ~~l~~~~~~~~l~-s~s~dg~i~iwd~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~I~i~d~~-~~~~~~~  330 (685)
                      ..++|+|+++.++ +++.++.+++|++  .++.......+...+.+++|+|+++++++++ .++.+++|++. .+..+..
T Consensus       132 ~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~  211 (297)
T 2ojh_A          132 YWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVER  211 (297)
T ss_dssp             EEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEE
T ss_pred             cceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEE
Confidence            7788888888776 6677888888885  4455544445557899999999999887766 58899999986 5666778


Q ss_pred             EecCCCCeEEEEEcCCCCEEEEEeCC-----------CcEEEEEcCCCceeeEEe--e-ccceEEEEEcCCCCeEEEEEe
Q 005656          331 FEGHTDRITDFCFSEDGKWLLSSGMD-----------GSLRIWDVILARQIDAIH--V-DVSITALSLSPNMDVLATAHV  396 (685)
Q Consensus       331 ~~~h~~~I~~l~~spdg~~l~s~s~D-----------g~I~iwd~~~~~~i~~~~--~-~~~v~~v~~spdg~~Lat~~~  396 (685)
                      +..|...+..++|+|+|++|++++.+           +.|++||+.+++......  . ...+.+++|+|+|++|++++.
T Consensus       212 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  291 (297)
T 2ojh_A          212 ITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRY  291 (297)
T ss_dssp             CCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEE
T ss_pred             EecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEe
Confidence            88888889999999999999988765           569999999887644433  3 345999999999999999987


Q ss_pred             CC
Q 005656          397 DQ  398 (685)
Q Consensus       397 d~  398 (685)
                      +.
T Consensus       292 ~~  293 (297)
T 2ojh_A          292 FP  293 (297)
T ss_dssp             CC
T ss_pred             cc
Confidence            75

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.93  E-value=6.1e-24  Score=217.54  Aligned_cols=273  Identities=11%  Similarity=0.071  Sum_probs=208.9

Q ss_pred             EEEEEeCCCcEEEEeCCCCeeeEEeeccccc-CeeEEEEeCCCcEE-EEecCCCcEEEEEecCCCCCCceeEecc-cC--
Q 005656           17 LLASGASSGVISIWNLEKRRLQSVIREAHDN-AIISLHFFANEPVL-MSASADNSIKMWIFDTTDGDPRLLRFRS-GH--   91 (685)
Q Consensus        17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h~~-~V~~l~~sp~~~~l-~s~s~D~~v~iWd~~~~~~~~~~~~~~~-~h--   91 (685)
                      ++++++.++.|.+||+.+++....+..++.. .+.+++|+|+++.+ ++++.++.|.+||+.++    +.+..+. ++  
T Consensus         3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~----~~~~~~~~~~~~   78 (337)
T 1pby_B            3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG----ETLGRIDLSTPE   78 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC----CEEEEEECCBTT
T ss_pred             EEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCC----CeEeeEEcCCcc
Confidence            7889999999999999999998888633332 48899999999755 56667899999998765    3433322 22  


Q ss_pred             --CCCCeEEEEecCCCEEEEEe------------CCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeee
Q 005656           92 --SAPPLCIRFYANGRHILSAG------------QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF  157 (685)
Q Consensus        92 --~~~v~~i~~~~~~~~l~s~s------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (685)
                        ...+.+++|+|+|+++++++            .++.|.+||+.+++....+.                          
T Consensus        79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--------------------------  132 (337)
T 1pby_B           79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE--------------------------  132 (337)
T ss_dssp             EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE--------------------------
T ss_pred             cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEe--------------------------
Confidence              23688999999999998886            57999999987665443331                          


Q ss_pred             ecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccc
Q 005656          158 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR  237 (685)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~  237 (685)
                                                                 ....+.+++|+|+|++++++  ++.|++||+.++...
T Consensus       133 -------------------------------------------~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~  167 (337)
T 1pby_B          133 -------------------------------------------APRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLV  167 (337)
T ss_dssp             -------------------------------------------CCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEE
T ss_pred             -------------------------------------------CCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEe
Confidence                                                       12346678899999998888  689999999998776


Q ss_pred             cccccccccccCCCCcCEEEEEEcCCCCEEEEEECC-C-----------------------eEEEEECCCCceEEEee--
Q 005656          238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH-G-----------------------DIKVWDFKGRDLKSRWE--  291 (685)
Q Consensus       238 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d-g-----------------------~i~iwd~~~~~~~~~~~--  291 (685)
                      ..+...      .+..+   +.|+|++..++.++.+ +                       .|.+||+.+++.. ...  
T Consensus       168 ~~~~~~------~~~~~---~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~  237 (337)
T 1pby_B          168 EDKPIQ------SWEAE---TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVR  237 (337)
T ss_dssp             EEECST------TTTTT---TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEE
T ss_pred             eeeecc------ccCCC---ceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecC
Confidence            554310      11122   2678888766544422 2                       4789999988775 322  


Q ss_pred             -cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcee
Q 005656          292 -VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI  370 (685)
Q Consensus       292 -~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i  370 (685)
                       ....+..++|+|++++++++  ++.|++||+.+++.+..+..+ ..+.+++|+|||++|++++.++.|++||+.+++.+
T Consensus       238 ~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~  314 (337)
T 1pby_B          238 IMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK  314 (337)
T ss_dssp             ECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred             CCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEE
Confidence             23567889999999999888  699999999999988888744 46789999999999999999999999999999998


Q ss_pred             eEEeecc
Q 005656          371 DAIHVDV  377 (685)
Q Consensus       371 ~~~~~~~  377 (685)
                      ..+..+.
T Consensus       315 ~~~~~~~  321 (337)
T 1pby_B          315 GQVDLPG  321 (337)
T ss_dssp             EEEECGG
T ss_pred             EEEEcCC
Confidence            8887553

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.92  E-value=1.5e-23  Score=237.67  Aligned_cols=352  Identities=7%  Similarity=0.015  Sum_probs=224.6

Q ss_pred             CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecC-----
Q 005656            3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT-----   77 (685)
Q Consensus         3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~-----   77 (685)
                      ..|++++|||| +.++++  .++.|++||+.+++.....  .+...+.+++|+|||+.|+++ .|+.|++|++.+     
T Consensus        82 ~~v~~~~~spd-~~~~~~--~~~~i~~~d~~~~~~~~l~--~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~  155 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLF--TQGGLVGFDMLARKVTYLF--DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGM  155 (706)
T ss_dssp             CCCEEEEETTT-TEEEEE--ETTEEEEEETTTTEEEEEE--CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCC
T ss_pred             cCceeEEECCC-CeEEEE--ECCEEEEEECCCCceEEcc--CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccC
Confidence            46999999999 524444  3599999999998876554  467789999999999999985 689999999987     


Q ss_pred             CCCCCceeEecccCCC--------------CCeEEEEecCCCEEEEEeCC-CceEEEEeecCceeeEechhhHHHHHhhc
Q 005656           78 TDGDPRLLRFRSGHSA--------------PPLCIRFYANGRHILSAGQD-RAFRLFSVIQDQQSRELSQRHVAKRARKL  142 (685)
Q Consensus        78 ~~~~~~~~~~~~~h~~--------------~v~~i~~~~~~~~l~s~s~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~  142 (685)
                      +    ........+..              .+.++.|+|||++|++++.| ..+..|.+.......              
T Consensus       156 g----~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~--------------  217 (706)
T 2z3z_A          156 S----RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLE--------------  217 (706)
T ss_dssp             C----CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSS--------------
T ss_pred             C----CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCC--------------
Confidence            4    22222222222              25899999999999988743 333333332111000              


Q ss_pred             cccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec
Q 005656          143 KMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA  222 (685)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~  222 (685)
                               +........  .  .+     .......+++|++.......  +.....+...+.+++|+|+|+++++++.
T Consensus       218 ---------~~~~~~~y~--~--~g-----~~~~~~~l~~~d~~~~~~~~--~~~~~~~~~~~~~~~~spdg~~l~~~~~  277 (706)
T 2z3z_A          218 ---------AESKPLYYP--M--AG-----TPSHHVTVGIYHLATGKTVY--LQTGEPKEKFLTNLSWSPDENILYVAEV  277 (706)
T ss_dssp             ---------CEEEEECCC--B--TT-----SCCCEEEEEEEETTTTEEEE--CCCCSCTTCEEEEEEECTTSSEEEEEEE
T ss_pred             ---------CceEEeeCC--C--CC-----CCCCeeEEEEEECCCCceEe--eccCCCCceeEeeEEEECCCCEEEEEEe
Confidence                     000000000  0  00     01123567888887543221  1111245567899999999999999887


Q ss_pred             CC-----cEEEEECCCCccccccccccccccCCCCcCEEEEEEcC--CCCEEEEEECCCeEEEEECC-CCceEEEeecC-
Q 005656          223 GG-----WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS--TNTLMISAGYHGDIKVWDFK-GRDLKSRWEVG-  293 (685)
Q Consensus       223 dg-----~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~-  293 (685)
                      ++     .|++||+.++.....+...   ........+.+++|+|  +|+++++++.||.+++|++. ++.....+..+ 
T Consensus       278 ~~~~~~~~v~~~d~~~g~~~~~~~~~---~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~  354 (706)
T 2z3z_A          278 NRAQNECKVNAYDAETGRFVRTLFVE---TDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGE  354 (706)
T ss_dssp             CTTSCEEEEEEEETTTCCEEEEEEEE---ECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSS
T ss_pred             CCCCCeeEEEEEECCCCceeeEEEEc---cCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCC
Confidence            75     8999999998333222110   0001112346789999  99999999999999999876 55555555543 


Q ss_pred             CceeE-EEEeecCCEEEEEeCC-C----eEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCC----CcEEEEE
Q 005656          294 CSLVK-IVYHRVNGLLATVADD-L----VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD----GSLRIWD  363 (685)
Q Consensus       294 ~~i~~-~~~~~~~~~l~~~~~d-g----~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~D----g~I~iwd  363 (685)
                      ..+.. ++|+|+++.|+.++.+ +    .|+.||+.+++ ...+. |...+.+++|||||++++.++.+    +.|++||
T Consensus       355 ~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d  432 (706)
T 2z3z_A          355 WEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTN  432 (706)
T ss_dssp             SCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEE
T ss_pred             eEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEE
Confidence            55665 7999999977665544 3    67778887776 33444 67789999999999988876443    5699999


Q ss_pred             cCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCC-CeEEEEE
Q 005656          364 VILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ-NGVYLWV  405 (685)
Q Consensus       364 ~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~-~~I~lW~  405 (685)
                      +.+++ ...+....++....+.+. ..+.....++ ..+..|-
T Consensus       433 ~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~  473 (706)
T 2z3z_A          433 IGKGS-HTLLEAKNPDTGYAMPEI-RTGTIMAADGQTPLYYKL  473 (706)
T ss_dssp             SSSCE-EEEEECC------CCCCE-EEEEEECTTSSSEEEEEE
T ss_pred             CCCCe-EeeccccchhhhcCCCCc-EEEEEEcCCCCEEEEEEE
Confidence            99887 444444334544444333 2333333354 4566654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.92  E-value=1e-23  Score=215.83  Aligned_cols=268  Identities=7%  Similarity=0.040  Sum_probs=204.5

Q ss_pred             cEEEEecCCCcEEEEEecCCCCCCceeEecc-cCCC-CCeEEEEecCCCEEE-EEeCCCceEEEEeecCceeeEechhhH
Q 005656           59 PVLMSASADNSIKMWIFDTTDGDPRLLRFRS-GHSA-PPLCIRFYANGRHIL-SAGQDRAFRLFSVIQDQQSRELSQRHV  135 (685)
Q Consensus        59 ~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~-~h~~-~v~~i~~~~~~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~  135 (685)
                      +++++++.+++|.+||..++    +.+..+. ++.. .+.+++|+|+|++++ +++.++.|.+||+.+++....+.....
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~----~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~   77 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKM----AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP   77 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTT----EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT
T ss_pred             cEEEEcCCCCeEEEEECCCC----cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc
Confidence            47899999999999998776    4554443 2222 588999999998765 455678999999987765544421000


Q ss_pred             HHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCC
Q 005656          136 AKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN  215 (685)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  215 (685)
                                                                                     ..+...+..++|+|+|+
T Consensus        78 ---------------------------------------------------------------~~~~~~~~~~~~s~dg~   94 (337)
T 1pby_B           78 ---------------------------------------------------------------EERVKSLFGAALSPDGK   94 (337)
T ss_dssp             ---------------------------------------------------------------TEEEECTTCEEECTTSS
T ss_pred             ---------------------------------------------------------------ccccccccceEECCCCC
Confidence                                                                           00011345789999999


Q ss_pred             EEEEEe------------cCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005656          216 FAVLGT------------AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG  283 (685)
Q Consensus       216 ~l~~g~------------~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~  283 (685)
                      +++++.            .++.|.+||+.++.....+.         ....+.+++|+|++++++++  ++.|++||+.+
T Consensus        95 ~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~---------~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~  163 (337)
T 1pby_B           95 TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE---------APRQITMLAWARDGSKLYGL--GRDLHVMDPEA  163 (337)
T ss_dssp             EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE---------CCSSCCCEEECTTSSCEEEE--SSSEEEEETTT
T ss_pred             EEEEEecccccccccccccCceEEEEECCCCcEEEEEe---------CCCCcceeEECCCCCEEEEe--CCeEEEEECCC
Confidence            999886            57999999999887765542         23457788999999988887  68999999999


Q ss_pred             CceEEEeecCCceeEEEEeecCCEEEEEeCC-C-----------------------eEEEEEcCCCeeE-EEEecCCCCe
Q 005656          284 RDLKSRWEVGCSLVKIVYHRVNGLLATVADD-L-----------------------VIRLFDVVALRMV-RKFEGHTDRI  338 (685)
Q Consensus       284 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g-----------------------~I~i~d~~~~~~~-~~~~~h~~~I  338 (685)
                      ++....+..+.....+.|+|++..+++.+.+ +                       .|.+||+.+++.. ..+..+...+
T Consensus       164 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~  243 (337)
T 1pby_B          164 GTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFY  243 (337)
T ss_dssp             TEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCE
T ss_pred             CcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCce
Confidence            9888777654322234789998866554432 2                       4789999998764 3345677788


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          339 TDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       339 ~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                      .+++|+|||++++++  ++.|++||+.+++.+..+..+..+.+++|+|+|++|++++.++ .|++|+..
T Consensus       244 ~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-~i~v~d~~  309 (337)
T 1pby_B          244 FSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALG-DLAAYDAE  309 (337)
T ss_dssp             EEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSS-EEEEEETT
T ss_pred             eeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCC-cEEEEECc
Confidence            999999999999988  6899999999999998888777799999999999999987765 99999854

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.91  E-value=1e-23  Score=239.92  Aligned_cols=281  Identities=10%  Similarity=0.092  Sum_probs=206.0

Q ss_pred             cCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCC---CCeEEEEecCCCEEEEEeCC---------C
Q 005656           47 NAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSA---PPLCIRFYANGRHILSAGQD---------R  114 (685)
Q Consensus        47 ~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~---~v~~i~~~~~~~~l~s~s~d---------g  114 (685)
                      ..+.+++|+|||+++++ +.||+|++||+.++    +....+.+|..   .|.+++|+|||++|++++.+         +
T Consensus        17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g----~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~   91 (723)
T 1xfd_A           17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETN----TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTG   91 (723)
T ss_dssp             CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGC----CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCS
T ss_pred             ccccccEEcCCCcEEEE-eCCCCEEEEECCCC----cEEEEeccccccccccceEEECCCCCEEEEEecCccceeeccee
Confidence            34788999999997766 78999999999877    34445555654   49999999999999999875         6


Q ss_pred             ceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCcee
Q 005656          115 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI  194 (685)
Q Consensus       115 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  194 (685)
                      .+.+||+.+++. ..+.                                                               
T Consensus        92 ~i~~~d~~~~~~-~~l~---------------------------------------------------------------  107 (723)
T 1xfd_A           92 YYVLSKIPHGDP-QSLD---------------------------------------------------------------  107 (723)
T ss_dssp             EEEEEESSSCCC-EECC---------------------------------------------------------------
T ss_pred             eEEEEECCCCce-Eecc---------------------------------------------------------------
Confidence            677888776643 1111                                                               


Q ss_pred             ecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCc------------------CEE
Q 005656          195 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNG------------------EVV  256 (685)
Q Consensus       195 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~------------------~v~  256 (685)
                        ....+...+..++|||+|+.+++++. +.|++||+.++.......        .+..                  .+.
T Consensus       108 --~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~--------~~~~~~~~~g~~~~v~~ee~~~~~~  176 (723)
T 1xfd_A          108 --PPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVS--------TGKEGVIYNGLSDWLYEEEILKTHI  176 (723)
T ss_dssp             --CTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEEC--------CCBTTTEEEEECCHHHHHTTSSSSE
T ss_pred             --CCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEec--------CCCCCceECcccceeEEEEeccCcc
Confidence              11133445778999999999999886 799999999887654432        2222                  347


Q ss_pred             EEEEcCCCCEEEEEECCC----------------------------------eEEEEECCCCceEEEeec-------CCc
Q 005656          257 GVACDSTNTLMISAGYHG----------------------------------DIKVWDFKGRDLKSRWEV-------GCS  295 (685)
Q Consensus       257 ~l~~~~~~~~l~s~s~dg----------------------------------~i~iwd~~~~~~~~~~~~-------~~~  295 (685)
                      +++|+|+|+.|++++.|+                                  .|++||+.+++....+..       ...
T Consensus       177 ~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~  256 (723)
T 1xfd_A          177 AHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYY  256 (723)
T ss_dssp             EEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEE
T ss_pred             eEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccce
Confidence            899999999999987553                                  799999998876444443       356


Q ss_pred             eeEEEEeecCCEEEEEeC----CCeEEEEEcCCCeeEEEEec-CCCCeE----EEEEcCCCCEEEE--EeCCC------c
Q 005656          296 LVKIVYHRVNGLLATVAD----DLVIRLFDVVALRMVRKFEG-HTDRIT----DFCFSEDGKWLLS--SGMDG------S  358 (685)
Q Consensus       296 i~~~~~~~~~~~l~~~~~----dg~I~i~d~~~~~~~~~~~~-h~~~I~----~l~~spdg~~l~s--~s~Dg------~  358 (685)
                      +..++|+|||+++++...    +..|++||+.+++....+.. +...+.    .++|||||++|+.  +..++      .
T Consensus       257 ~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~  336 (723)
T 1xfd_A          257 ITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYH  336 (723)
T ss_dssp             EEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEE
T ss_pred             eEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeE
Confidence            889999999998877653    35899999999987776654 344443    7899999997775  44667      5


Q ss_pred             EEEEE-cCCCc--eeeEEe-eccceEE-EEEcCCCCeEEEEEeCC--CeEEEEEcC
Q 005656          359 LRIWD-VILAR--QIDAIH-VDVSITA-LSLSPNMDVLATAHVDQ--NGVYLWVNR  407 (685)
Q Consensus       359 I~iwd-~~~~~--~i~~~~-~~~~v~~-v~~spdg~~Lat~~~d~--~~I~lW~~~  407 (685)
                      |++|| ..++.  +...+. .+..+.. ++|||||+.|+.++.++  +.++||...
T Consensus       337 l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~  392 (723)
T 1xfd_A          337 ITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSAN  392 (723)
T ss_dssp             EEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred             EEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEe
Confidence            77777 34444  144444 3344554 69999999998887764  589999864

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.91  E-value=2.9e-22  Score=206.22  Aligned_cols=294  Identities=9%  Similarity=0.032  Sum_probs=199.9

Q ss_pred             EEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEE-EEecCCCcEEEEEecCCCCCCce
Q 005656            6 TALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL-MSASADNSIKMWIFDTTDGDPRL   84 (685)
Q Consensus         6 ~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l-~s~s~D~~v~iWd~~~~~~~~~~   84 (685)
                      +.+++++++. ++++++.++.|.+||+.+++.+..+..+....+..++|+|+++++ +++..++.|.+||+.++    +.
T Consensus         3 ~g~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~----~~   77 (349)
T 1jmx_B            3 TGPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC----KN   77 (349)
T ss_dssp             -CCCCCTTCE-EEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT----EE
T ss_pred             ccccccCCCE-EEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCC----cE
Confidence            3567888887 899999999999999999999888873332368899999999855 55667899999998765    44


Q ss_pred             eEecccC------CCCCeEEEEecCCCEEEEEeCC------------CceEEEEeecCceeeEechhhHHHHHhhccccc
Q 005656           85 LRFRSGH------SAPPLCIRFYANGRHILSAGQD------------RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKE  146 (685)
Q Consensus        85 ~~~~~~h------~~~v~~i~~~~~~~~l~s~s~d------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (685)
                      ......+      ...+.+++|+|+|+++++++.+            +.|.+||+.+++....+..              
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~--------------  143 (349)
T 1jmx_B           78 TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT--------------  143 (349)
T ss_dssp             EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE--------------
T ss_pred             EEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeee--------------
Confidence            4433322      2348899999999999998865            8899999876432211100              


Q ss_pred             cccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcE
Q 005656          147 EELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWI  226 (685)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i  226 (685)
                                                                      .    .....+.+++|+|+|+ +++++  +.|
T Consensus       144 ------------------------------------------------~----~~~~~~~~~~~s~dg~-l~~~~--~~i  168 (349)
T 1jmx_B          144 ------------------------------------------------F----PMPRQVYLMRAADDGS-LYVAG--PDI  168 (349)
T ss_dssp             ------------------------------------------------E----ECCSSCCCEEECTTSC-EEEES--SSE
T ss_pred             ------------------------------------------------c----cCCCcccceeECCCCc-EEEcc--CcE
Confidence                                                            0    1223577889999999 66653  459


Q ss_pred             EEEECCCCcccccccccccccc-------------CC--C-CcCEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCceEE-
Q 005656          227 ERFNLQSGISRGSYLDMSERSN-------------YA--H-NGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKS-  288 (685)
Q Consensus       227 ~~~d~~~~~~~~~~~~~~~~~~-------------~~--h-~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~-  288 (685)
                      .+||+.+++....+........             ..  | .....++++++++....... ....+..+|..+++... 
T Consensus       169 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (349)
T 1jmx_B          169 YKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQ  248 (349)
T ss_dssp             EEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEE
T ss_pred             EEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEec
Confidence            9999999887655431100000             00  0 00334566665442110000 00112224444443211 


Q ss_pred             -EeecCCceeEEEEee-cCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005656          289 -RWEVGCSLVKIVYHR-VNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL  366 (685)
Q Consensus       289 -~~~~~~~i~~~~~~~-~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~  366 (685)
                       .-.....+..++++| ++++++++  ++.|.+||+.+++.+..+..+ ..+.+++|+|||++|++++.++.|++||+.+
T Consensus       249 ~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~  325 (349)
T 1jmx_B          249 EFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT  325 (349)
T ss_dssp             EEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred             ccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEeccc
Confidence             111345788999999 99999888  889999999999988888743 4578999999999998888899999999999


Q ss_pred             CceeeEEeec
Q 005656          367 ARQIDAIHVD  376 (685)
Q Consensus       367 ~~~i~~~~~~  376 (685)
                      ++.+..+..+
T Consensus       326 ~~~~~~~~~~  335 (349)
T 1jmx_B          326 LEKVKNIKLP  335 (349)
T ss_dssp             TEEEEEEECS
T ss_pred             cceeeeeecC
Confidence            9988887655

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.91  E-value=1.9e-23  Score=237.42  Aligned_cols=339  Identities=10%  Similarity=-0.004  Sum_probs=225.3

Q ss_pred             EEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeeccccc---CeeEEEEeCCCcEEEEecC---------CCcEEEEE
Q 005656            7 ALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDN---AIISLHFFANEPVLMSASA---------DNSIKMWI   74 (685)
Q Consensus         7 ~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~---~V~~l~~sp~~~~l~s~s~---------D~~v~iWd   74 (685)
                      +++|+|||+ +++++ .||.|++||+.+++....+. +|..   .|.+++|||||++|++++.         ++.|++||
T Consensus        20 ~~~~s~dg~-~~~~~-~d~~i~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d   96 (719)
T 1z68_A           20 FPNWISGQE-YLHQS-ADNNIVLYNIETGQSYTILS-NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYD   96 (719)
T ss_dssp             CCEESSSSE-EEEEC-TTSCEEEEESSSCCEEEEEC-HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             ccEECCCCe-EEEEc-CCCCEEEEEcCCCcEEEEEc-cccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEE
Confidence            678999996 66655 59999999999999877765 5544   4999999999999998876         78999999


Q ss_pred             ecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCce
Q 005656           75 FDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV  154 (685)
Q Consensus        75 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (685)
                      ++++    +.+... .....+..++|+|||+.|+++. ++.|++|++.+++.......+..                   
T Consensus        97 ~~~g----~~~~~~-~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~-------------------  151 (719)
T 1z68_A           97 LSNG----EFVRGN-ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRE-------------------  151 (719)
T ss_dssp             TTTT----EECCSS-CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBT-------------------
T ss_pred             CCCC----ccccce-ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCc-------------------
Confidence            8876    221000 1124688999999999999886 78999999977654322110000                   


Q ss_pred             eeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCC----------
Q 005656          155 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG----------  224 (685)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg----------  224 (685)
                                    .           .+++-..    ..+..  ........+++|||||++|++++.+.          
T Consensus       152 --------------~-----------~v~~g~~----~~v~~--ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~  200 (719)
T 1z68_A          152 --------------N-----------KIFNGIP----DWVYE--EEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSY  200 (719)
T ss_dssp             --------------T-----------TEEESSC----CHHHH--HHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEE
T ss_pred             --------------C-----------CeEcccc----cceee--eecccCcccEEECCCCCEEEEEEECCCCCceEEeec
Confidence                          0           0000000    00000  00012235899999999999987652          


Q ss_pred             ------------------------cEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC----CeE
Q 005656          225 ------------------------WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH----GDI  276 (685)
Q Consensus       225 ------------------------~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d----g~i  276 (685)
                                              .|++||+.++...............+|...+..++|+|+++++++....    ..|
T Consensus       201 ~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l  280 (719)
T 1z68_A          201 YGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVL  280 (719)
T ss_dssp             CCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEE
T ss_pred             cCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEE
Confidence                                    7889999887653100000000112688899999999998777664432    248


Q ss_pred             EEEE----CCCCceEEEee-----cCCcee-----EEEEeecCCEEEE--EeCCC--eEEEEEcCCCeeEEEEecCCCCe
Q 005656          277 KVWD----FKGRDLKSRWE-----VGCSLV-----KIVYHRVNGLLAT--VADDL--VIRLFDVVALRMVRKFEGHTDRI  338 (685)
Q Consensus       277 ~iwd----~~~~~~~~~~~-----~~~~i~-----~~~~~~~~~~l~~--~~~dg--~I~i~d~~~~~~~~~~~~h~~~I  338 (685)
                      .+||    ..+++....+.     +...+.     .+.|+|+|+.++.  +..+|  .|++||+.+++ ...+..+...+
T Consensus       281 ~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v  359 (719)
T 1z68_A          281 SICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEA  359 (719)
T ss_dssp             EEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCE
T ss_pred             EEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEE
Confidence            8999    87776655442     234454     7899999995554  44455  67788887776 45666667778


Q ss_pred             EEEEEcCCCCEEEEEeCC-----CcEEEEEcCC--Cce-eeEEee-----ccceEEEEEcCCCCeEEEEEeCC--CeEEE
Q 005656          339 TDFCFSEDGKWLLSSGMD-----GSLRIWDVIL--ARQ-IDAIHV-----DVSITALSLSPNMDVLATAHVDQ--NGVYL  403 (685)
Q Consensus       339 ~~l~~spdg~~l~s~s~D-----g~I~iwd~~~--~~~-i~~~~~-----~~~v~~v~~spdg~~Lat~~~d~--~~I~l  403 (685)
                      ..+.++ +++.|+..+.+     +.+++|.+..  +.. ...+..     ...+..+.|+|+|++++..+.+.  ..+++
T Consensus       360 ~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l  438 (719)
T 1z68_A          360 INIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTL  438 (719)
T ss_dssp             EEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEE
T ss_pred             EEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEE
Confidence            888888 88888777654     8899998764  421 233321     23478899999999888654332  36778


Q ss_pred             EEc
Q 005656          404 WVN  406 (685)
Q Consensus       404 W~~  406 (685)
                      |+.
T Consensus       439 ~d~  441 (719)
T 1z68_A          439 HDG  441 (719)
T ss_dssp             ECS
T ss_pred             EEC
Confidence            864

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.91  E-value=2.2e-21  Score=199.67  Aligned_cols=291  Identities=12%  Similarity=0.121  Sum_probs=197.2

Q ss_pred             EEEEEe----CCCcEEEEeC--CCCeeeEEeecccccCeeEEEEeCCCcEEEEecC---CCcEEEEEecCCCCCCceeEe
Q 005656           17 LLASGA----SSGVISIWNL--EKRRLQSVIREAHDNAIISLHFFANEPVLMSASA---DNSIKMWIFDTTDGDPRLLRF   87 (685)
Q Consensus        17 ~latg~----~dg~I~vwd~--~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~---D~~v~iWd~~~~~~~~~~~~~   87 (685)
                      .+++|+    .++.|.+|++  .+++........+...+..++|+|+|+ |++++.   ++.|.+|+++.+.  .+.+..
T Consensus         4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~--~~~~~~   80 (347)
T 3hfq_A            4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQT--AHKLNT   80 (347)
T ss_dssp             EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTE--EEEEEE
T ss_pred             EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCc--EEEeee
Confidence            455554    3455777755  456654432225667889999999999 555443   6899999996542  234455


Q ss_pred             cccCCCCCeEEEEecCCCEEEEEe-CCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccC
Q 005656           88 RSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERD  166 (685)
Q Consensus        88 ~~~h~~~v~~i~~~~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (685)
                      ...+...+..++|+|+|++|++++ .++.+.+|++........+..                                  
T Consensus        81 ~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~----------------------------------  126 (347)
T 3hfq_A           81 VVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDT----------------------------------  126 (347)
T ss_dssp             EEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEE----------------------------------
T ss_pred             eecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecce----------------------------------
Confidence            456788899999999999999888 679999999964322221110                                  


Q ss_pred             CcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECC-CCccccccccccc
Q 005656          167 WCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ-SGISRGSYLDMSE  245 (685)
Q Consensus       167 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~-~~~~~~~~~~~~~  245 (685)
                                      .....  .+..    .......+.+++|+|+|+.++++..++.|.+|++. ++.......    
T Consensus       127 ----------------~~~~~--~~p~----~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~----  180 (347)
T 3hfq_A          127 ----------------VQHSG--HGPR----PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSV----  180 (347)
T ss_dssp             ----------------EECCC--CCSS----TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEE----
T ss_pred             ----------------eecCC--CCCC----ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeee----
Confidence                            00000  0000    00234568899999999966666678899999998 443321110    


Q ss_pred             cccCCCCcCEEEEEEcCCCCEEEEE-ECCCeEEEEECCC--CceEE--Eeec-C------CceeEEEEeecCCEEE-EEe
Q 005656          246 RSNYAHNGEVVGVACDSTNTLMISA-GYHGDIKVWDFKG--RDLKS--RWEV-G------CSLVKIVYHRVNGLLA-TVA  312 (685)
Q Consensus       246 ~~~~~h~~~v~~l~~~~~~~~l~s~-s~dg~i~iwd~~~--~~~~~--~~~~-~------~~i~~~~~~~~~~~l~-~~~  312 (685)
                       ........+..++|+|+|++++++ ..++.|.+|++..  ++...  .+.. .      ..+..++|+|+|++|+ ++.
T Consensus       181 -~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~  259 (347)
T 3hfq_A          181 -LTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNR  259 (347)
T ss_dssp             -EECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEE
T ss_pred             -EEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeC
Confidence             001223467889999999966664 5688999999874  54322  2221 1      3478899999999774 555


Q ss_pred             CCCeEEEEEcC---CCeeEEEEecCCCCeEEEEEcCCCCEEEEEeC-CCcEEEE--EcCCCceee
Q 005656          313 DDLVIRLFDVV---ALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM-DGSLRIW--DVILARQID  371 (685)
Q Consensus       313 ~dg~I~i~d~~---~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~-Dg~I~iw--d~~~~~~i~  371 (685)
                      .++.|.+|++.   ..+.+..+..+...+..++|+|||++|++++. ++.|.+|  |..+|++..
T Consensus       260 ~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~  324 (347)
T 3hfq_A          260 GYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL  324 (347)
T ss_dssp             TTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             CCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence            68999999997   33566677777777899999999999988875 4899999  545676653

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.91  E-value=3.4e-21  Score=199.48  Aligned_cols=310  Identities=15%  Similarity=0.130  Sum_probs=208.6

Q ss_pred             EEEEEe----CCCcEEEEeC--CCCeeeEEeecccccCeeEEEEeCCCcEEEEecCC----CcEEEEEecCCCCCCceeE
Q 005656           17 LLASGA----SSGVISIWNL--EKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD----NSIKMWIFDTTDGDPRLLR   86 (685)
Q Consensus        17 ~latg~----~dg~I~vwd~--~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D----~~v~iWd~~~~~~~~~~~~   86 (685)
                      ++++|+    .++.|.+|.+  .+++...... .+...+..++|+|++++|++++.+    +.|.+|+++...+..+.+.
T Consensus        15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~-~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~   93 (361)
T 3scy_A           15 TMLVGTYTSGNSKGIYTFRFNEETGESLPLSD-AEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLN   93 (361)
T ss_dssp             EEEEEECCSSSCCEEEEEEEETTTCCEEEEEE-EECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEE
T ss_pred             EEEEEeccCCCCCCEEEEEEeCCCCCEEEeec-ccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEee
Confidence            667775    3567999866  5566555444 277788999999999999998875    7999999987544444555


Q ss_pred             ecccCCCCCeEEEEecCCCEEEEEe-CCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccccccc
Q 005656           87 FRSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRER  165 (685)
Q Consensus        87 ~~~~h~~~v~~i~~~~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (685)
                      ....+...+..+++  ++++|++++ .++.|.+|++........+..                                 
T Consensus        94 ~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~---------------------------------  138 (361)
T 3scy_A           94 TQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASD---------------------------------  138 (361)
T ss_dssp             EEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSE---------------------------------
T ss_pred             EeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccce---------------------------------
Confidence            54445666777887  888888776 578999999975433221110                                 


Q ss_pred             CCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECCCCcc------cc
Q 005656          166 DWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-AGGWIERFNLQSGIS------RG  238 (685)
Q Consensus       166 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~dg~i~~~d~~~~~~------~~  238 (685)
                                      ......     .-..+.......+.+++|+|+|++++++. .++.|.+|++.....      ..
T Consensus       139 ----------------~~~~~g-----~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~  197 (361)
T 3scy_A          139 ----------------VIEFKG-----SGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFL  197 (361)
T ss_dssp             ----------------EEECCC-----CCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCE
T ss_pred             ----------------eEEccC-----CCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCccccccee
Confidence                            000000     00000112344578999999999776655 478999998875442      10


Q ss_pred             ccccccccccCCCCcCEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCceEEE--eec----CCceeEEEEeecCCEEEEE
Q 005656          239 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSR--WEV----GCSLVKIVYHRVNGLLATV  311 (685)
Q Consensus       239 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~--~~~----~~~i~~~~~~~~~~~l~~~  311 (685)
                      .... .......+...+.+++|+|+|+++++++ .++.|.+|++.++.+...  +..    ......++|+|+|++|+++
T Consensus       198 ~~~~-~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~  276 (361)
T 3scy_A          198 TKGT-PEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYAS  276 (361)
T ss_dssp             EEEE-EEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEE
T ss_pred             eccc-ccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEE
Confidence            0000 0001114455678999999999887777 689999999987755322  221    1346799999999988776


Q ss_pred             eCC--CeEEEEEcC--CCe--eEEEEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEc--CCCceeeEEe-ec-cceE
Q 005656          312 ADD--LVIRLFDVV--ALR--MVRKFEGHTDRITDFCFSEDGKWLLSSG-MDGSLRIWDV--ILARQIDAIH-VD-VSIT  380 (685)
Q Consensus       312 ~~d--g~I~i~d~~--~~~--~~~~~~~h~~~I~~l~~spdg~~l~s~s-~Dg~I~iwd~--~~~~~i~~~~-~~-~~v~  380 (685)
                      ..+  +.|.+|++.  +++  .+..+.. ...+.+++|+|||++|++++ .++.|.+|++  .++++..... .+ ..+.
T Consensus       277 ~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~  355 (361)
T 3scy_A          277 NRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPV  355 (361)
T ss_dssp             ECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEE
T ss_pred             CCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCe
Confidence            654  899999996  444  4555554 55788999999999998887 6789999655  4676654431 22 2488


Q ss_pred             EEEEc
Q 005656          381 ALSLS  385 (685)
Q Consensus       381 ~v~~s  385 (685)
                      |+.|.
T Consensus       356 ~v~~~  360 (361)
T 3scy_A          356 CLKFV  360 (361)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            88885

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.91  E-value=7.4e-23  Score=226.41  Aligned_cols=271  Identities=12%  Similarity=0.120  Sum_probs=205.3

Q ss_pred             ccccCeeEEEEeCCCcEEEEecC-CCcEEEEEecCCCCCCceeEecccCC-CCCeEEEEecCCCEEEEEeC---CCceEE
Q 005656           44 AHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHS-APPLCIRFYANGRHILSAGQ---DRAFRL  118 (685)
Q Consensus        44 ~h~~~V~~l~~sp~~~~l~s~s~-D~~v~iWd~~~~~~~~~~~~~~~~h~-~~v~~i~~~~~~~~l~s~s~---dg~i~v  118 (685)
                      .+..+|++++|+|||+.||+++. ||+++||+++.+    ...+ +..|. ..+..++|+|| +.+++++.   +...++
T Consensus        19 ~~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g----~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l   92 (582)
T 3o4h_A           19 LIAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG----ETVK-LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHAL   92 (582)
T ss_dssp             HHHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT----EEEE-CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEE
T ss_pred             HhccchheeecCCCCCeEEEEEccCCceeEEEEcCC----CcEe-eecccccccccccCCCC-eEEEEeccCCCCcceEE
Confidence            34668999999999999999887 999999998654    3333 33444 68999999999 77777765   456677


Q ss_pred             EEeec--CceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeec
Q 005656          119 FSVIQ--DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR  196 (685)
Q Consensus       119 wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  196 (685)
                      |.+..  ......+                                                                  
T Consensus        93 ~~~~~~~~g~~~~l------------------------------------------------------------------  106 (582)
T 3o4h_A           93 FKVNTSRPGEEQRL------------------------------------------------------------------  106 (582)
T ss_dssp             EEEETTSTTCCEEC------------------------------------------------------------------
T ss_pred             EEEeccCCCccccc------------------------------------------------------------------
Confidence            76654  2211111                                                                  


Q ss_pred             CCCCCCCCeEEEEEccCCCE-EEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC--
Q 005656          197 PCPENPTAVKACTISACGNF-AVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH--  273 (685)
Q Consensus       197 ~~~~~~~~v~~~~~s~~g~~-l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d--  273 (685)
                         .........+|+|+|+. +++...++.+.+||+.++......         .+..  .+++|+|+|+++++++.+  
T Consensus       107 ---~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~---------~~~~--~~~~~spDG~~la~~~~~~~  172 (582)
T 3o4h_A          107 ---EAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELA---------RLPG--FGFVSDIRGDLIAGLGFFGG  172 (582)
T ss_dssp             ---TTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEE---------EESS--CEEEEEEETTEEEEEEEEET
T ss_pred             ---cCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEee---------cCCC--ceEEECCCCCEEEEEEEcCC
Confidence               11223446688888864 344445556669999888655433         2222  789999999999988877  


Q ss_pred             --CeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCC--eEEEEEcCCCeeEEEEecCCCCeEEEE-------
Q 005656          274 --GDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDL--VIRLFDVVALRMVRKFEGHTDRITDFC-------  342 (685)
Q Consensus       274 --g~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~I~i~d~~~~~~~~~~~~h~~~I~~l~-------  342 (685)
                        +.|++||+.+++......+...+..++|+|||+.|+++..++  .|++||+.+++.. .+.+|...+..++       
T Consensus       173 ~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~  251 (582)
T 3o4h_A          173 GRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWL  251 (582)
T ss_dssp             TEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEE
T ss_pred             CCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccce
Confidence              789999999988776555567889999999999999888888  8999999999887 7788888777777       


Q ss_pred             -EcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCCC--eEEEEEc
Q 005656          343 -FSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQN--GVYLWVN  406 (685)
Q Consensus       343 -~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~--~I~lW~~  406 (685)
                       |+|||.++++++.||++++|++  |+...  .....+.+++|+ +|+++++++.+..  .|++|+.
T Consensus       252 ~~spdg~~~~~~~~~g~~~l~~~--g~~~~--~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~  313 (582)
T 3o4h_A          252 GYLPDGRLAVVARREGRSAVFID--GERVE--APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPS  313 (582)
T ss_dssp             EECTTSCEEEEEEETTEEEEEET--TEEEC--CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred             eEcCCCcEEEEEEcCCcEEEEEE--CCeec--cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcC
Confidence             9999999999999999999999  66554  223458999999 9999999888753  3555553

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.90  E-value=1.3e-20  Score=195.05  Aligned_cols=281  Identities=14%  Similarity=0.158  Sum_probs=195.7

Q ss_pred             CcEEEEe----cCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCC----CceEEEEeecC-ceee
Q 005656           58 EPVLMSA----SADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD----RAFRLFSVIQD-QQSR  128 (685)
Q Consensus        58 ~~~l~s~----s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d----g~i~vwd~~~~-~~~~  128 (685)
                      ..+++.|    +.++.|.+|.++...+....+...  +...+..++|+|+|++|++++.+    +.|.+|++... ....
T Consensus        13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~   90 (361)
T 3scy_A           13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH   90 (361)
T ss_dssp             EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEE
T ss_pred             ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEE
Confidence            3455555    346789999998766655555544  77888999999999999999886    79999998763 1111


Q ss_pred             EechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEE
Q 005656          129 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKAC  208 (685)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~  208 (685)
                      .+...                                                                 .........+
T Consensus        91 ~~~~~-----------------------------------------------------------------~~~~~~p~~~  105 (361)
T 3scy_A           91 LLNTQ-----------------------------------------------------------------KTMGADPCYL  105 (361)
T ss_dssp             EEEEE-----------------------------------------------------------------ECSSSCEEEE
T ss_pred             EeeEe-----------------------------------------------------------------ccCCCCcEEE
Confidence            11100                                                                 0123345666


Q ss_pred             EEccCCCEEEEEe-cCCcEEEEECCCCccccccccc------cccccCCCCcCEEEEEEcCCCCEEEEEE-CCCeEEEEE
Q 005656          209 TISACGNFAVLGT-AGGWIERFNLQSGISRGSYLDM------SERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWD  280 (685)
Q Consensus       209 ~~s~~g~~l~~g~-~dg~i~~~d~~~~~~~~~~~~~------~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd  280 (685)
                      ++  +|++++++. .++.|.+|++............      .......+...+.+++|+|+|+++++++ .++.|.+|+
T Consensus       106 ~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~  183 (361)
T 3scy_A          106 TT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFN  183 (361)
T ss_dssp             EE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEE
Confidence            77  788777765 5789999999764433222110      0000112344578999999999776665 578999999


Q ss_pred             CCCCc-------e-------EEEeecCCceeEEEEeecCCEEEEEe-CCCeEEEEEcCCCee--EEEEe---cCCCCeEE
Q 005656          281 FKGRD-------L-------KSRWEVGCSLVKIVYHRVNGLLATVA-DDLVIRLFDVVALRM--VRKFE---GHTDRITD  340 (685)
Q Consensus       281 ~~~~~-------~-------~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~I~i~d~~~~~~--~~~~~---~h~~~I~~  340 (685)
                      +....       +       .........+..++|+|+|+++++++ .++.|.+||+.+++.  +..+.   .+...+..
T Consensus       184 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~  263 (361)
T 3scy_A          184 INPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGD  263 (361)
T ss_dssp             ECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEE
T ss_pred             EcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCccc
Confidence            87533       2       22233346678999999999887777 689999999997754  33333   23455789


Q ss_pred             EEEcCCCCEEEEEeC--CCcEEEEEcC--CCc--eeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          341 FCFSEDGKWLLSSGM--DGSLRIWDVI--LAR--QIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       341 l~~spdg~~l~s~s~--Dg~I~iwd~~--~~~--~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                      ++|+|||++|+++..  ++.|.+|++.  +++  .+..+.....+.+++|+|||++|++++.+++.|.+|...
T Consensus       264 i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          264 IHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERD  336 (361)
T ss_dssp             EEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred             EEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence            999999999877665  4899999995  455  344444444589999999999999999766799998643

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.90  E-value=1.4e-22  Score=224.20  Aligned_cols=270  Identities=11%  Similarity=0.029  Sum_probs=202.0

Q ss_pred             CCcEEEEEEccCCCCEEEEEeC-CCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecC---CCcEEEEEecC
Q 005656            2 RGAVTALAFSSDGQPLLASGAS-SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA---DNSIKMWIFDT   77 (685)
Q Consensus         2 ~~~V~~l~fspdg~~~latg~~-dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~---D~~v~iWd~~~   77 (685)
                      ..+|++++|+|||+ .||+++. ||++.||++.+++...... .+...+.+++|+|| +++++++.   +...++|.++.
T Consensus        21 ~~~~~~~~~~~DG~-~la~~s~~~g~~~lw~~~~g~~~~lt~-~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~   97 (582)
T 3o4h_A           21 AVEKYSLQGVVDGD-KLLVVGFSEGSVNAYLYDGGETVKLNR-EPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT   97 (582)
T ss_dssp             HSCEEEEEEEETTT-EEEEEEEETTEEEEEEEETTEEEECCS-SCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEET
T ss_pred             ccchheeecCCCCC-eEEEEEccCCceeEEEEcCCCcEeeec-ccccccccccCCCC-eEEEEeccCCCCcceEEEEEec
Confidence            35799999999999 7887765 9999999997777655443 44468999999999 78887765   56678888776


Q ss_pred             --CCCCCceeEecccCCCCCeEEEEecCCCE-EEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCce
Q 005656           78 --TDGDPRLLRFRSGHSAPPLCIRFYANGRH-ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV  154 (685)
Q Consensus        78 --~~~~~~~~~~~~~h~~~v~~i~~~~~~~~-l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (685)
                        .... .   .+.. ...+...+|+|+|+. +++.+.++.+.+||+.+++......                       
T Consensus        98 ~~~g~~-~---~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~-----------------------  149 (582)
T 3o4h_A           98 SRPGEE-Q---RLEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR-----------------------  149 (582)
T ss_dssp             TSTTCC-E---ECTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE-----------------------
T ss_pred             cCCCcc-c---cccC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec-----------------------
Confidence              3221 2   1211 223456789998763 3344445556699998775432221                       


Q ss_pred             eeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecC----CcEEEEE
Q 005656          155 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG----GWIERFN  230 (685)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d----g~i~~~d  230 (685)
                                                                    +..  .+++|||||+++++++.+    +.|++||
T Consensus       150 ----------------------------------------------~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d  181 (582)
T 3o4h_A          150 ----------------------------------------------LPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSN  181 (582)
T ss_dssp             ----------------------------------------------ESS--CEEEEEEETTEEEEEEEEETTEEEEEEEE
T ss_pred             ----------------------------------------------CCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEc
Confidence                                                          111  678999999999988777    7899999


Q ss_pred             CCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCC--eEEEEECCCCceEEEeec-CCceeEEE-------
Q 005656          231 LQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG--DIKVWDFKGRDLKSRWEV-GCSLVKIV-------  300 (685)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~-~~~i~~~~-------  300 (685)
                      +.++..... .        .|.+.+..++|+|||+.|+++..++  .|++||+.+++.. .+.. ...+..++       
T Consensus       182 ~~~g~~~~l-~--------~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~  251 (582)
T 3o4h_A          182 LSSGGLRVF-D--------SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWL  251 (582)
T ss_dssp             TTTCCCEEE-C--------CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEE
T ss_pred             CCCCCceEe-e--------cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccce
Confidence            998876532 2        7888899999999999999888888  8999999998877 4433 34455555       


Q ss_pred             -EeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCc---EEEEEcCC
Q 005656          301 -YHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGS---LRIWDVIL  366 (685)
Q Consensus       301 -~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~---I~iwd~~~  366 (685)
                       |+|||.++++++.|+.+++|++  ++...   .+.+.|.+++|+ ||+++++++.+.+   +++||..+
T Consensus       252 ~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          252 GYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE  315 (582)
T ss_dssp             EECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred             eEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence             9999999999999999999999  66554   345678999999 9999998887754   66666543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.90  E-value=6.2e-21  Score=196.31  Aligned_cols=273  Identities=11%  Similarity=0.083  Sum_probs=187.9

Q ss_pred             CCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeC---CCceEEEEeecCceeeEechhhHHHHHhhc
Q 005656           66 ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ---DRAFRLFSVIQDQQSRELSQRHVAKRARKL  142 (685)
Q Consensus        66 ~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  142 (685)
                      .++.|.+|.++...+....+.. ..+...+..++|+|+|+ |++++.   ++.|++|++.++........          
T Consensus        14 ~~~~i~v~~~d~~tg~~~~~~~-~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~----------   81 (347)
T 3hfq_A           14 TSQGIYQGTLDTTAKTLTNDGL-LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTV----------   81 (347)
T ss_dssp             SCCEEEEEEEETTTTEEEEEEE-EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEE----------
T ss_pred             CCCCEEEEEEcCCCCeEEEeee-eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeee----------
Confidence            4678999999876554333333 34567788999999999 665554   68999999965542111100          


Q ss_pred             cccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe-
Q 005656          143 KMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-  221 (685)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-  221 (685)
                                                                              ..+...+..++|+|+|+++++++ 
T Consensus        82 --------------------------------------------------------~~~~~~p~~~a~spdg~~l~~~~~  105 (347)
T 3hfq_A           82 --------------------------------------------------------VAPGTPPAYVAVDEARQLVYSANY  105 (347)
T ss_dssp             --------------------------------------------------------EEESCCCSEEEEETTTTEEEEEET
T ss_pred             --------------------------------------------------------ecCCCCCEEEEECCCCCEEEEEeC
Confidence                                                                    01234567899999999988887 


Q ss_pred             cCCcEEEEECCCCcccccccccccc----ccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECC-CCceEEE--ee--c
Q 005656          222 AGGWIERFNLQSGISRGSYLDMSER----SNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK-GRDLKSR--WE--V  292 (685)
Q Consensus       222 ~dg~i~~~d~~~~~~~~~~~~~~~~----~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~--~~--~  292 (685)
                      .++.|.+|++........+......    ....+...+.+++|+|+|+.+++...++.|.+|++. ++++...  +.  .
T Consensus       106 ~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~  185 (347)
T 3hfq_A          106 HKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEA  185 (347)
T ss_dssp             TTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCT
T ss_pred             CCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCC
Confidence            6799999999632221111100000    000133458899999999966666678899999998 5544322  12  2


Q ss_pred             CCceeEEEEeecCCEEEE-EeCCCeEEEEEcCC--Cee--EEEEecCC------CCeEEEEEcCCCCEEE-EEeCCCcEE
Q 005656          293 GCSLVKIVYHRVNGLLAT-VADDLVIRLFDVVA--LRM--VRKFEGHT------DRITDFCFSEDGKWLL-SSGMDGSLR  360 (685)
Q Consensus       293 ~~~i~~~~~~~~~~~l~~-~~~dg~I~i~d~~~--~~~--~~~~~~h~------~~I~~l~~spdg~~l~-s~s~Dg~I~  360 (685)
                      ...+..++|+|+|+++++ +..++.|.+|++..  ++.  +..+....      ..+..++|+|||++|+ +...++.|.
T Consensus       186 g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~  265 (347)
T 3hfq_A          186 GFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLA  265 (347)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEE
T ss_pred             CCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEE
Confidence            346788999999996655 56688999999874  543  33443333      3488999999999875 556789999


Q ss_pred             EEEcCC-C--ceeeEEeecc-ceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656          361 IWDVIL-A--RQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       361 iwd~~~-~--~~i~~~~~~~-~v~~v~~spdg~~Lat~~~d~~~I~lW~~  406 (685)
                      +|++.. +  +.+..+..+. .+.+++|+|||++|++++.+++.|.+|..
T Consensus       266 v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~  315 (347)
T 3hfq_A          266 VFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYAR  315 (347)
T ss_dssp             EEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             EEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEE
Confidence            999973 3  3444454433 48999999999999999987679999964

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.89  E-value=8.1e-22  Score=197.35  Aligned_cols=233  Identities=13%  Similarity=0.147  Sum_probs=176.8

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCC-CeeeEEeeccc-ccCeeEEEEeCCCcEEEEec--CCCcEEEEEec
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEK-RRLQSVIREAH-DNAIISLHFFANEPVLMSAS--ADNSIKMWIFD   76 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~-~~~~~~~~~~h-~~~V~~l~~sp~~~~l~s~s--~D~~v~iWd~~   76 (685)
                      |.+.|.+++|+|||+ +|++++ ++.|.+||+.+ ++...... +| ...|.+++|+|++++|++++  .++..++|.++
T Consensus        40 ~~~~v~~~~~spdg~-~l~~~~-~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~  116 (297)
T 2ojh_A           40 TPELFEAPNWSPDGK-YLLLNS-EGLLYRLSLAGDPSPEKVDT-GFATICNNDHGISPDGALYAISDKVEFGKSAIYLLP  116 (297)
T ss_dssp             ESSCCEEEEECTTSS-EEEEEE-TTEEEEEESSSCCSCEECCC-TTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEE
T ss_pred             CCcceEeeEECCCCC-EEEEEc-CCeEEEEeCCCCCCceEecc-ccccccccceEECCCCCEEEEEEeCCCCcceEEEEE
Confidence            467899999999999 888876 78999999999 87776665 44 57899999999999999998  45678888887


Q ss_pred             CCCCCCceeEecccCCCCCeEEEEecCCCEEE-EEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCcee
Q 005656           77 TTDGDPRLLRFRSGHSAPPLCIRFYANGRHIL-SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI  155 (685)
Q Consensus        77 ~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (685)
                      ...+.   ...+..+ ..+.+++|+|++++|+ +++.++.+++|++.....                             
T Consensus       117 ~~~~~---~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~-----------------------------  163 (297)
T 2ojh_A          117 STGGT---PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG-----------------------------  163 (297)
T ss_dssp             TTCCC---CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC-----------------------------
T ss_pred             CCCCc---eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCC-----------------------------
Confidence            65433   2233333 3488899999999877 677888888888642210                             


Q ss_pred             eeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCc
Q 005656          156 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI  235 (685)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~  235 (685)
                                                                                                     .
T Consensus       164 -------------------------------------------------------------------------------~  164 (297)
T 2ojh_A          164 -------------------------------------------------------------------------------V  164 (297)
T ss_dssp             -------------------------------------------------------------------------------C
T ss_pred             -------------------------------------------------------------------------------c
Confidence                                                                                           0


Q ss_pred             cccccccccccccCCCCcCEEEEEEcCCCCEEEEEE-CCCeEEEEECC-CCceEEEee-cCCceeEEEEeecCCEEEEEe
Q 005656          236 SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFK-GRDLKSRWE-VGCSLVKIVYHRVNGLLATVA  312 (685)
Q Consensus       236 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~-~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~  312 (685)
                      ..         ....|...+.+++|+|+++.+++++ .++.+++|++. .+.....+. +...+..+.|+|++++|++++
T Consensus       165 ~~---------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  235 (297)
T 2ojh_A          165 ET---------RLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVS  235 (297)
T ss_dssp             EE---------ECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEE
T ss_pred             ce---------EcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEE
Confidence            00         0015566788999999999887766 58899999875 343444443 346788999999999998887


Q ss_pred             CC-----------CeEEEEEcCCCee--EEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q 005656          313 DD-----------LVIRLFDVVALRM--VRKFEGHTDRITDFCFSEDGKWLLSSGMDG  357 (685)
Q Consensus       313 ~d-----------g~I~i~d~~~~~~--~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg  357 (685)
                      .+           +.|++||+.+++.  +..+.+|...+.+++|+|||++|++++.+.
T Consensus       236 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          236 YDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             cCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            65           5799999998865  445558889999999999999999887653

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.89  E-value=4e-21  Score=197.60  Aligned_cols=279  Identities=13%  Similarity=0.052  Sum_probs=192.9

Q ss_pred             EEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCC-CCCeEEEEecCCCEEE-EEeCCCceEEEEeecCceee
Q 005656           51 SLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHS-APPLCIRFYANGRHIL-SAGQDRAFRLFSVIQDQQSR  128 (685)
Q Consensus        51 ~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~-~~v~~i~~~~~~~~l~-s~s~dg~i~vwd~~~~~~~~  128 (685)
                      ++++++++.++++++.+++|++||..++    +.+..+..+. ..+..++|+|+|++++ ++..++.|.+||+.+++...
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~----~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~   79 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASD----TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF   79 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTT----EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCC----cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEE
Confidence            4567888999999999999999998776    5555544332 2578999999998665 44568999999998776544


Q ss_pred             EechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEE
Q 005656          129 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKAC  208 (685)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~  208 (685)
                      .+.....                                                              .......+..+
T Consensus        80 ~~~~~~~--------------------------------------------------------------~~~~~~~~~~~   97 (349)
T 1jmx_B           80 HANLSSV--------------------------------------------------------------PGEVGRSMYSF   97 (349)
T ss_dssp             EEESCCS--------------------------------------------------------------TTEEEECSSCE
T ss_pred             EEEcccc--------------------------------------------------------------cccccccccce
Confidence            4321000                                                              00001235678


Q ss_pred             EEccCCCEEEEEecC------------CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeE
Q 005656          209 TISACGNFAVLGTAG------------GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDI  276 (685)
Q Consensus       209 ~~s~~g~~l~~g~~d------------g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i  276 (685)
                      +|+|+|++++++..+            +.|.+||+.++........      ..+...+.+++|+|+++ +++++  +.|
T Consensus        98 ~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~------~~~~~~~~~~~~s~dg~-l~~~~--~~i  168 (349)
T 1jmx_B           98 AISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT------FPMPRQVYLMRAADDGS-LYVAG--PDI  168 (349)
T ss_dssp             EECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE------EECCSSCCCEEECTTSC-EEEES--SSE
T ss_pred             EECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeee------ccCCCcccceeECCCCc-EEEcc--CcE
Confidence            999999999998865            8999999988654332210      12344688999999999 65554  459


Q ss_pred             EEEECCCCceEEEeecCC-------------------------ceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCee-EE
Q 005656          277 KVWDFKGRDLKSRWEVGC-------------------------SLVKIVYHRVNGLLATVAD-DLVIRLFDVVALRM-VR  329 (685)
Q Consensus       277 ~iwd~~~~~~~~~~~~~~-------------------------~i~~~~~~~~~~~l~~~~~-dg~I~i~d~~~~~~-~~  329 (685)
                      .+||..+++....+..+.                         ....+++++++........ ...+..+|..+++. ..
T Consensus       169 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (349)
T 1jmx_B          169 YKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQ  248 (349)
T ss_dssp             EEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEE
T ss_pred             EEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEec
Confidence            999999998877665442                         3344556554421100000 01122244444432 11


Q ss_pred             EEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          330 KFEGHTDRITDFCFSE-DGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       330 ~~~~h~~~I~~l~~sp-dg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                      .+..+...+..++|+| ||++++++  ++.|.+||+.+++.+..+.....+.+++|+|+|++|++++.++ .|++|+..
T Consensus       249 ~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-~v~v~d~~  324 (349)
T 1jmx_B          249 EFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFN-DLAVFNPD  324 (349)
T ss_dssp             EEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSS-EEEEEETT
T ss_pred             ccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCCC-eEEEEecc
Confidence            2234666789999999 99999988  8899999999999988888777789999999999999987674 99999854

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.88  E-value=2.4e-21  Score=202.74  Aligned_cols=296  Identities=10%  Similarity=0.010  Sum_probs=203.7

Q ss_pred             EEEeCCCCeeeEEeecccccCeeE-----EEEeCCCcEEEEecC-CCc--EEEEEecCCCCCCceeEecccCCCCCeEEE
Q 005656           28 SIWNLEKRRLQSVIREAHDNAIIS-----LHFFANEPVLMSASA-DNS--IKMWIFDTTDGDPRLLRFRSGHSAPPLCIR   99 (685)
Q Consensus        28 ~vwd~~~~~~~~~~~~~h~~~V~~-----l~~sp~~~~l~s~s~-D~~--v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~   99 (685)
                      ..+|..++.....+. .|......     .+|+|||++|+.++. ++.  |.+||++++    .......++...+..+.
T Consensus        13 ~~~~~~~g~~~~~lt-~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g----~~~~lt~~~~~~~~~~~   87 (388)
T 3pe7_A           13 TYQDASTGAQVTRLT-PPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ----VATQLTEGRGDNTFGGF   87 (388)
T ss_dssp             EEECTTTCCEEEECS-CTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTC----EEEECCCSSCBCSSSCE
T ss_pred             EEecCCCCcceEEec-CCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCC----ceEEeeeCCCCCccceE
Confidence            345777788777776 67666665     889999999988887 775  555555544    44445556666666789


Q ss_pred             EecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCce
Q 005656          100 FYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQ  179 (685)
Q Consensus       100 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (685)
                      |+|||+.|+.++.++.|++||+.+++......                                                
T Consensus        88 ~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~------------------------------------------------  119 (388)
T 3pe7_A           88 LSPDDDALFYVKDGRNLMRVDLATLEENVVYQ------------------------------------------------  119 (388)
T ss_dssp             ECTTSSEEEEEETTTEEEEEETTTCCEEEEEE------------------------------------------------
T ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCcceeeee------------------------------------------------
Confidence            99999999999999999999998776443321                                                


Q ss_pred             EEEEEcCccccCceeecCCCCCCCCeE--EEEEccCCCEEEEE----------------------ecCCcEEEEECCCCc
Q 005656          180 AYVWRLQNFVLGEHILRPCPENPTAVK--ACTISACGNFAVLG----------------------TAGGWIERFNLQSGI  235 (685)
Q Consensus       180 ~~~w~~~~~~~~~~~~~~~~~~~~~v~--~~~~s~~g~~l~~g----------------------~~dg~i~~~d~~~~~  235 (685)
                                          .+...+.  ...++++|.+++..                      ..++.|++||+.++.
T Consensus       120 --------------------~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~  179 (388)
T 3pe7_A          120 --------------------VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE  179 (388)
T ss_dssp             --------------------CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC
T ss_pred             --------------------chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc
Confidence                                1111121  22347777776642                      234679999999886


Q ss_pred             cccccccccccccCCCCcCEEEEEEcC-CCCEEEEEECC------CeEEEEECCCCceEEEeecC--CceeEEEEeecCC
Q 005656          236 SRGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYH------GDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNG  306 (685)
Q Consensus       236 ~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~--~~i~~~~~~~~~~  306 (685)
                      .....         .+...+..+.|+| +|+.|+.++.+      ..|.++|..++.........  ..+....|+|+|+
T Consensus       180 ~~~l~---------~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~  250 (388)
T 3pe7_A          180 STVIL---------QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGS  250 (388)
T ss_dssp             EEEEE---------EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSS
T ss_pred             eEEee---------cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCC
Confidence            54433         4566789999999 99988887753      37888888776554444433  3577889999999


Q ss_pred             EEEEEeC-CC----eEEEEEcCCCeeE--EEEecCCCC---eEEEEEcCCCCEEEEE---------eCCCcEEEEEcCCC
Q 005656          307 LLATVAD-DL----VIRLFDVVALRMV--RKFEGHTDR---ITDFCFSEDGKWLLSS---------GMDGSLRIWDVILA  367 (685)
Q Consensus       307 ~l~~~~~-dg----~I~i~d~~~~~~~--~~~~~h~~~---I~~l~~spdg~~l~s~---------s~Dg~I~iwd~~~~  367 (685)
                      .|+..+. ++    .|++||+.+++..  ..+.++...   ...++|+|||++|+..         ..+..|++||+.++
T Consensus       251 ~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~  330 (388)
T 3pe7_A          251 ALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG  330 (388)
T ss_dssp             CEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred             EEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence            7755443 22    4999999988643  333331100   1223799999988854         45668999999988


Q ss_pred             ceeeEEeecc-----------ceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656          368 RQIDAIHVDV-----------SITALSLSPNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       368 ~~i~~~~~~~-----------~v~~v~~spdg~~Lat~~~d~~~I~lW~  405 (685)
                      +.........           .+.+++|+|||+.|+.++..++...||.
T Consensus       331 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~  379 (388)
T 3pe7_A          331 TQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYL  379 (388)
T ss_dssp             EEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred             ceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEE
Confidence            7654444444           4788999999999998886555666765

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.88  E-value=1.5e-20  Score=193.72  Aligned_cols=246  Identities=10%  Similarity=0.071  Sum_probs=193.1

Q ss_pred             CCCCeEEEEecCCCEEEEEeC-------CCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccc
Q 005656           92 SAPPLCIRFYANGRHILSAGQ-------DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE  164 (685)
Q Consensus        92 ~~~v~~i~~~~~~~~l~s~s~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (685)
                      ...+..++|+|+++++++++.       ++.|.+||..+++....+..                                
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~--------------------------------   87 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN--------------------------------   87 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE--------------------------------
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec--------------------------------
Confidence            455789999999998888874       56799999887765544421                                


Q ss_pred             cCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEE-ecCCcEEEEECCCCccccccccc
Q 005656          165 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAGGWIERFNLQSGISRGSYLDM  243 (685)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~dg~i~~~d~~~~~~~~~~~~~  243 (685)
                                                           ...+..++++|+|++++++ ..++.|.+||+.+++....+...
T Consensus        88 -------------------------------------~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~  130 (353)
T 3vgz_A           88 -------------------------------------DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLD  130 (353)
T ss_dssp             -------------------------------------SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESC
T ss_pred             -------------------------------------CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecC
Confidence                                                 1235678999999966655 45799999999999876665310


Q ss_pred             cccc-cCCCCcCEEEEEEcCCCCEEEEEE--CCCeEEEEECCCCceEEEee-cCCceeEEEEeecCCEEEEEeCCCeEEE
Q 005656          244 SERS-NYAHNGEVVGVACDSTNTLMISAG--YHGDIKVWDFKGRDLKSRWE-VGCSLVKIVYHRVNGLLATVADDLVIRL  319 (685)
Q Consensus       244 ~~~~-~~~h~~~v~~l~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~I~i  319 (685)
                      .... .......+.+++|+|+++++++++  .++.|.+||..+++....+. ....+..++|+|+++++++++.++.|.+
T Consensus       131 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~  210 (353)
T 3vgz_A          131 DRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELIT  210 (353)
T ss_dssp             CCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEE
T ss_pred             CCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEE
Confidence            0000 000111378999999999877776  47899999999999988887 4566889999999999999999999999


Q ss_pred             EEcCCCeeEEEEec----CCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEE
Q 005656          320 FDVVALRMVRKFEG----HTDRITDFCFSEDGKWLLSSGM-DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATA  394 (685)
Q Consensus       320 ~d~~~~~~~~~~~~----h~~~I~~l~~spdg~~l~s~s~-Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~  394 (685)
                      ||+.+++.+..+..    +...+.+++|+|+|+++++++. ++.|.+||+.+++.+..+....+ .+++|+|+|++++++
T Consensus       211 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~s~dg~~l~v~  289 (353)
T 3vgz_A          211 IDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES-LAVLFNPARNEAYVT  289 (353)
T ss_dssp             EETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC-CCEEEETTTTEEEEE
T ss_pred             EECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC-ceEEECCCCCEEEEE
Confidence            99999999888774    5667889999999998776664 58999999999999888876654 679999999988888


Q ss_pred             EeCCCeEEEEEcC
Q 005656          395 HVDQNGVYLWVNR  407 (685)
Q Consensus       395 ~~d~~~I~lW~~~  407 (685)
                      +..++.|.+|+..
T Consensus       290 ~~~~~~v~~~d~~  302 (353)
T 3vgz_A          290 HRQAGKVSVIDAK  302 (353)
T ss_dssp             ETTTTEEEEEETT
T ss_pred             ECCCCeEEEEECC
Confidence            7655699999854

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.87  E-value=5.7e-20  Score=189.58  Aligned_cols=284  Identities=11%  Similarity=0.172  Sum_probs=199.4

Q ss_pred             CCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEec----------CCCcEEEEEecCCCCCCceeEeccc--
Q 005656           23 SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS----------ADNSIKMWIFDTTDGDPRLLRFRSG--   90 (685)
Q Consensus        23 ~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s----------~D~~v~iWd~~~~~~~~~~~~~~~~--   90 (685)
                      .|+.|.+||..+++.+..+. .+..+  .++|+||++++++++          .+++|.+||..+.    +.+..+..  
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~-~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~----~~~~~i~~~~  101 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVP-TAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL----TFEKEISLPP  101 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEE-CCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC----CEEEEEEECT
T ss_pred             ccCeEEEEECCCCeEEEEec-CCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC----cEEEEEEcCc
Confidence            36899999999999988887 55555  999999999998876          3678999998765    44443322  


Q ss_pred             ----CCCCCeEEEEecCCCEEEEEeC--CCceEEEEeecCceeeE-echhhHHHHHhhccccccccccCceeeeeccccc
Q 005656           91 ----HSAPPLCIRFYANGRHILSAGQ--DRAFRLFSVIQDQQSRE-LSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIR  163 (685)
Q Consensus        91 ----h~~~v~~i~~~~~~~~l~s~s~--dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (685)
                          +...+..++|+|||++|+++..  +++|.+||+.+++.... +..                               
T Consensus       102 ~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-------------------------------  150 (361)
T 2oiz_A          102 KRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-------------------------------  150 (361)
T ss_dssp             TBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-------------------------------
T ss_pred             cccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-------------------------------
Confidence                2356788999999999998874  58999999988766544 321                               


Q ss_pred             ccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEECCC-Cccccccc
Q 005656          164 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGGWIERFNLQS-GISRGSYL  241 (685)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~~~d~~~-~~~~~~~~  241 (685)
                                                             .....+.+.|++ ..+++.+.+|.+.+|++.. +.......
T Consensus       151 ---------------------------------------~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~  191 (361)
T 2oiz_A          151 ---------------------------------------AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSR  191 (361)
T ss_dssp             ---------------------------------------TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEE
T ss_pred             ---------------------------------------CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeecc
Confidence                                                   011123445544 4556666777777777654 33221100


Q ss_pred             cccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceE--EEeec-----------CCceeEEEEeecCCEE
Q 005656          242 DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLK--SRWEV-----------GCSLVKIVYHRVNGLL  308 (685)
Q Consensus       242 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~-----------~~~i~~~~~~~~~~~l  308 (685)
                      .  ......+..++ .+.+.+++..++..+.++.|.++|+......  ..+..           ......++++|+++.+
T Consensus       192 ~--~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~l  268 (361)
T 2oiz_A          192 S--KQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRM  268 (361)
T ss_dssp             C--CCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEE
T ss_pred             c--cceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeE
Confidence            0  00000112221 2233566777777788999999999755422  22211           0112237899998877


Q ss_pred             EEEeC-----------CCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC--ceeeEE-e
Q 005656          309 ATVAD-----------DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA--RQIDAI-H  374 (685)
Q Consensus       309 ~~~~~-----------dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~--~~i~~~-~  374 (685)
                      +++..           .+.|.+||+.+++.+.++..+.  +.+++|+|||++|++++. ++|.+||..++  +.+..+ .
T Consensus       269 yv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~  345 (361)
T 2oiz_A          269 YVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEG  345 (361)
T ss_dssp             EEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETT
T ss_pred             EEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEecc
Confidence            77653           3589999999999999999887  999999999999998887 99999999999  998887 4


Q ss_pred             eccceEEEEEcCCCC
Q 005656          375 VDVSITALSLSPNMD  389 (685)
Q Consensus       375 ~~~~v~~v~~spdg~  389 (685)
                      .......++++|+|.
T Consensus       346 ~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          346 AAEASLQVQFHPVGG  360 (361)
T ss_dssp             SCSSEEEEEECCCSC
T ss_pred             CCCCcEEEEecCCCC
Confidence            555689999999986

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.87  E-value=1.5e-20  Score=196.58  Aligned_cols=295  Identities=10%  Similarity=0.023  Sum_probs=186.1

Q ss_pred             EEEccCCCCEEEEEeC-CC--cEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCce
Q 005656            8 LAFSSDGQPLLASGAS-SG--VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRL   84 (685)
Q Consensus         8 l~fspdg~~~latg~~-dg--~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~   84 (685)
                      .+|||||+ .|+.++. +|  .|.+||+.+++...... +|...+.++.|+|||+.|+.++.++.|++||+.++    +.
T Consensus        41 ~~~SpDg~-~l~~~~~~~g~~~l~~~d~~~g~~~~lt~-~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g----~~  114 (388)
T 3pe7_A           41 KCFTRDGS-KLLFGGAFDGPWNYYLLDLNTQVATQLTE-GRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATL----EE  114 (388)
T ss_dssp             CCBCTTSC-EEEEEECTTSSCEEEEEETTTCEEEECCC-SSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTC----CE
T ss_pred             ccCCCCCC-EEEEEEcCCCCceEEEEeCCCCceEEeee-CCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCC----cc
Confidence            78999999 6666665 66  48889999998877765 67777778899999999999999999999998876    33


Q ss_pred             eEecccCCCCCeEEE--EecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccc
Q 005656           85 LRFRSGHSAPPLCIR--FYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI  162 (685)
Q Consensus        85 ~~~~~~h~~~v~~i~--~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (685)
                      ......+...+....  ++|++++++....++         .. .......  ......                     
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~---------~~-~~~~~~~--~~~~~~---------------------  161 (388)
T 3pe7_A          115 NVVYQVPAEWVGYGTWVANSDCTKLVGIEIRR---------ED-WVPLTDW--KKFHEF---------------------  161 (388)
T ss_dssp             EEEEECCTTEEEEEEEEECTTSSEEEEEEEEG---------GG-CCCCCSH--HHHHHH---------------------
T ss_pred             eeeeechhhcccccceeECCCCCeeccccccC---------cc-ccccccc--chhhhh---------------------
Confidence            323334444443333  478888776422110         00 0000000  000000                     


Q ss_pred             cccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEcc-CCCEEEEEecC------CcEEEEECCCCc
Q 005656          163 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAG------GWIERFNLQSGI  235 (685)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~d------g~i~~~d~~~~~  235 (685)
                               ........+++|++.........     .+...+..++|+| +|+.++....+      ..|+++|...+.
T Consensus       162 ---------~~~~~~~~l~~~d~~~g~~~~l~-----~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~  227 (388)
T 3pe7_A          162 ---------YFTKPCCRLMRVDLKTGESTVIL-----QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN  227 (388)
T ss_dssp             ---------GGGCCCEEEEEEETTTCCEEEEE-----EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC
T ss_pred             ---------hccCCcceEEEEECCCCceEEee-----cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc
Confidence                     00001133444554433211111     2345678999999 99999887764      378888887665


Q ss_pred             cccccccccccccCCCC--cCEEEEEEcCCCCEEEEEEC-CC----eEEEEECCCCceEEEeecCC------ceeEEEEe
Q 005656          236 SRGSYLDMSERSNYAHN--GEVVGVACDSTNTLMISAGY-HG----DIKVWDFKGRDLKSRWEVGC------SLVKIVYH  302 (685)
Q Consensus       236 ~~~~~~~~~~~~~~~h~--~~v~~l~~~~~~~~l~s~s~-dg----~i~iwd~~~~~~~~~~~~~~------~i~~~~~~  302 (685)
                      .....         .+.  ..+..++|+|+|+.|+..+. ++    .|++||+.+++.........      ......|+
T Consensus       228 ~~~l~---------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~s  298 (388)
T 3pe7_A          228 MRKVK---------THAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMV  298 (388)
T ss_dssp             CEESC---------CCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEE
T ss_pred             eEEee---------eCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEc
Confidence            43322         232  35788999999997766543 22    39999999887544333222      01223799


Q ss_pred             ecCCEEEEE---------eCCCeEEEEEcCCCeeEEEEecCCC-----------CeEEEEEcCCCCEEEEEe-CCCcEEE
Q 005656          303 RVNGLLATV---------ADDLVIRLFDVVALRMVRKFEGHTD-----------RITDFCFSEDGKWLLSSG-MDGSLRI  361 (685)
Q Consensus       303 ~~~~~l~~~---------~~dg~I~i~d~~~~~~~~~~~~h~~-----------~I~~l~~spdg~~l~s~s-~Dg~I~i  361 (685)
                      |+|+.|+..         ..+..|++||+.+++. ..+..|..           .+..++|+|||++|+.++ .+|...+
T Consensus       299 pdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l  377 (388)
T 3pe7_A          299 GDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPAL  377 (388)
T ss_dssp             EEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEE
T ss_pred             cCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeE
Confidence            999977754         4566999999998875 45555665           578899999999888666 5676666


Q ss_pred             EEcC
Q 005656          362 WDVI  365 (685)
Q Consensus       362 wd~~  365 (685)
                      |.+.
T Consensus       378 ~~~~  381 (388)
T 3pe7_A          378 YLAT  381 (388)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.86  E-value=1.9e-19  Score=186.43  Aligned_cols=275  Identities=15%  Similarity=0.158  Sum_probs=187.1

Q ss_pred             EEEecC--CCcEEEEEecCCCCCCceeEec-ccCCCCCeEEEEecCCCEEEEEeCCCceEEEEee-cCceeeEechhhHH
Q 005656           61 LMSASA--DNSIKMWIFDTTDGDPRLLRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI-QDQQSRELSQRHVA  136 (685)
Q Consensus        61 l~s~s~--D~~v~iWd~~~~~~~~~~~~~~-~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~-~~~~~~~~~~~~~~  136 (685)
                      ++.|+.  ++.|.+|+++...+....+... .+....+..++|+|+|++|++++.+ .|.+|++. +++.......    
T Consensus         5 ~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~----   79 (365)
T 1jof_A            5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASH----   79 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEE----
T ss_pred             EEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEe----
Confidence            444443  2578888887654433333222 1344578899999999999999888 99999986 5543221100    


Q ss_pred             HHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCE
Q 005656          137 KRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNF  216 (685)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  216 (685)
                                                                                     ...+.+.+++++|+|++
T Consensus        80 ---------------------------------------------------------------~~~g~~~~~~~spdg~~   96 (365)
T 1jof_A           80 ---------------------------------------------------------------PIGGHPRANDADTNTRA   96 (365)
T ss_dssp             ---------------------------------------------------------------ECCSSGGGGCTTSCCEE
T ss_pred             ---------------------------------------------------------------ecCCCCccEEECCCCCE
Confidence                                                                           00011334788999995


Q ss_pred             --EEEEe-------------cCCcEEEEECC-CCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC-CCeEEEE
Q 005656          217 --AVLGT-------------AGGWIERFNLQ-SGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-HGDIKVW  279 (685)
Q Consensus       217 --l~~g~-------------~dg~i~~~d~~-~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-dg~i~iw  279 (685)
                        ++++.             .+|.+.+|++. .+.....+..    ....+...+.+++|+|+|+++++++. ++.|++|
T Consensus        97 l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~----~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~  172 (365)
T 1jof_A           97 IFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQN----YEYQENTGIHGMVFDPTETYLYSADLTANKLWTH  172 (365)
T ss_dssp             EEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEE----EECCTTCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             EEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEee----EEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEE
Confidence              44443             68999999997 4544322210    00124567899999999998887764 6899999


Q ss_pred             ECC-CCceE--EEee---cCCceeEEEEeecCCEEEEEeC-CCeEEEEEcC--CCeeE---EEEe-------cCCC----
Q 005656          280 DFK-GRDLK--SRWE---VGCSLVKIVYHRVNGLLATVAD-DLVIRLFDVV--ALRMV---RKFE-------GHTD----  336 (685)
Q Consensus       280 d~~-~~~~~--~~~~---~~~~i~~~~~~~~~~~l~~~~~-dg~I~i~d~~--~~~~~---~~~~-------~h~~----  336 (685)
                      ++. +++..  ..+.   +...+..++|+|+|+++++++. ++.|.+|++.  +++..   ..+.       +|..    
T Consensus       173 ~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~  252 (365)
T 1jof_A          173 RKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGK  252 (365)
T ss_dssp             EECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSS
T ss_pred             EECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccccc
Confidence            998 67653  2333   2456889999999998888775 6899999875  56542   2222       1222    


Q ss_pred             --CeEEEE-EcCCCCEEEEEeCC-C-----cEEEEEcC-CCceeeE---Eee-ccceEEEEEcC---CCCeEEEEEeCCC
Q 005656          337 --RITDFC-FSEDGKWLLSSGMD-G-----SLRIWDVI-LARQIDA---IHV-DVSITALSLSP---NMDVLATAHVDQN  399 (685)
Q Consensus       337 --~I~~l~-~spdg~~l~s~s~D-g-----~I~iwd~~-~~~~i~~---~~~-~~~v~~v~~sp---dg~~Lat~~~d~~  399 (685)
                        .+..++ |+|||++|++++.+ +     +|.+|++. +++....   +.. ...+..++|+|   ||++|++++.+++
T Consensus       253 ~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~  332 (365)
T 1jof_A          253 GLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEG  332 (365)
T ss_dssp             BSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSC
T ss_pred             ccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCC
Confidence              588999 99999998876543 2     89999996 6765442   222 23477899999   8999999988766


Q ss_pred             eEEEEEcC
Q 005656          400 GVYLWVNR  407 (685)
Q Consensus       400 ~I~lW~~~  407 (685)
                      .|.+|+..
T Consensus       333 ~v~v~~~~  340 (365)
T 1jof_A          333 WLEIYRWK  340 (365)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEEc
Confidence            99999854

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.85  E-value=5.3e-21  Score=217.23  Aligned_cols=282  Identities=11%  Similarity=0.050  Sum_probs=195.8

Q ss_pred             eEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCC---CCeEEEEecCCCEEEEEeC---------CCceE
Q 005656           50 ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSA---PPLCIRFYANGRHILSAGQ---------DRAFR  117 (685)
Q Consensus        50 ~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~---~v~~i~~~~~~~~l~s~s~---------dg~i~  117 (685)
                      .+++|+|++.+++++ .|++|++||+.++    +......+|..   .+.+++|+|||++|++++.         ++.|+
T Consensus        19 ~~~~~s~dg~~~~~~-~d~~i~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~   93 (719)
T 1z68_A           19 FFPNWISGQEYLHQS-ADNNIVLYNIETG----QSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYY   93 (719)
T ss_dssp             CCCEESSSSEEEEEC-TTSCEEEEESSSC----CEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             CccEECCCCeEEEEc-CCCCEEEEEcCCC----cEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEE
Confidence            378999999766554 6999999998876    44444444433   4899999999999998876         68899


Q ss_pred             EEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecC
Q 005656          118 LFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRP  197 (685)
Q Consensus       118 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  197 (685)
                      +||+.+++.....                                                                   
T Consensus        94 ~~d~~~g~~~~~~-------------------------------------------------------------------  106 (719)
T 1z68_A           94 IYDLSNGEFVRGN-------------------------------------------------------------------  106 (719)
T ss_dssp             EEETTTTEECCSS-------------------------------------------------------------------
T ss_pred             EEECCCCccccce-------------------------------------------------------------------
Confidence            9998766431000                                                                   


Q ss_pred             CCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccc-cccCCCC---------cCEEEEEEcCCCCEE
Q 005656          198 CPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSE-RSNYAHN---------GEVVGVACDSTNTLM  267 (685)
Q Consensus       198 ~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~-~~~~~h~---------~~v~~l~~~~~~~~l  267 (685)
                        .....+..++|||||+.++++. ++.|++|++.++........... ....+|.         +...+++|+|+|++|
T Consensus       107 --~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~l  183 (719)
T 1z68_A          107 --ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFL  183 (719)
T ss_dssp             --CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEE
T ss_pred             --ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEE
Confidence              1123477899999999999885 78999999998876533211000 0000111         112489999999999


Q ss_pred             EEEECCC----------------------------------eEEEEECCCCceE--EEe-------ecCCceeEEEEeec
Q 005656          268 ISAGYHG----------------------------------DIKVWDFKGRDLK--SRW-------EVGCSLVKIVYHRV  304 (685)
Q Consensus       268 ~s~s~dg----------------------------------~i~iwd~~~~~~~--~~~-------~~~~~i~~~~~~~~  304 (685)
                      ++++.|.                                  .|++||+.+++..  ..+       .+...+..++|+||
T Consensus       184 a~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD  263 (719)
T 1z68_A          184 AYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTD  263 (719)
T ss_dssp             EEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSS
T ss_pred             EEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCC
Confidence            9988652                                  7899999987653  111       13356889999999


Q ss_pred             CCEEEEEeCC----CeEEEEE----cCCCeeEEEE----ecCCCCeE-----EEEEcCCCCEEEE--EeCCC--cEEEEE
Q 005656          305 NGLLATVADD----LVIRLFD----VVALRMVRKF----EGHTDRIT-----DFCFSEDGKWLLS--SGMDG--SLRIWD  363 (685)
Q Consensus       305 ~~~l~~~~~d----g~I~i~d----~~~~~~~~~~----~~h~~~I~-----~l~~spdg~~l~s--~s~Dg--~I~iwd  363 (685)
                      ++++++....    ..|.+||    +.+++....+    .+|.+.+.     .++|+|||+.|+.  +..+|  .|.+||
T Consensus       264 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~  343 (719)
T 1z68_A          264 ERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIK  343 (719)
T ss_dssp             SEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEES
T ss_pred             CeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEE
Confidence            8877775432    3588999    8888766555    46777776     8899999996554  44555  577778


Q ss_pred             cCCCceeeEEeeccceEEEEEcCCCCeEEEEEeC----CCeEEEEEcC
Q 005656          364 VILARQIDAIHVDVSITALSLSPNMDVLATAHVD----QNGVYLWVNR  407 (685)
Q Consensus       364 ~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d----~~~I~lW~~~  407 (685)
                      +.+++..........+..+.++ +++.|+..+.+    .+.+++|...
T Consensus       344 ~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~  390 (719)
T 1z68_A          344 DTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRIS  390 (719)
T ss_dssp             SCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred             CCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEe
Confidence            7777643222233347888877 88888887765    3478888754

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.85  E-value=1.4e-19  Score=205.59  Aligned_cols=340  Identities=10%  Similarity=0.040  Sum_probs=212.7

Q ss_pred             CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccC-----eeEEEEeCCCcEEEEecCC---------C
Q 005656            3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNA-----IISLHFFANEPVLMSASAD---------N   68 (685)
Q Consensus         3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~-----V~~l~~sp~~~~l~s~s~D---------~   68 (685)
                      ....+++|+|||+ +++++  ||.|++||+.+++....+. +|...     ...++|||||++|+.++.+         +
T Consensus        17 ~~~~~~~w~~dg~-~~~~~--~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~   92 (740)
T 4a5s_A           17 LKLYSLRWISDHE-YLYKQ--ENNILVFNAEYGNSSVFLE-NSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA   92 (740)
T ss_dssp             CCCCCEEECSSSE-EEEEE--TTEEEEEETTTCCEEEEEC-TTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred             ccccccEECCCCc-EEEEc--CCcEEEEECCCCceEEEEe-chhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence            3466899999998 88886  8999999999999877776 66533     2448899999999998876         4


Q ss_pred             cEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccc
Q 005656           69 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEE  148 (685)
Q Consensus        69 ~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (685)
                      .+.+||+.++    +. ..+..|...+...+|||||+.|+.+. |+.|++|++.++........+...            
T Consensus        93 ~~~~~d~~~~----~~-~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~------------  154 (740)
T 4a5s_A           93 SYDIYDLNKR----QL-ITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKED------------  154 (740)
T ss_dssp             EEEEEETTTT----EE-CCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTT------------
T ss_pred             EEEEEECCCC----cE-EEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCcc------------
Confidence            5669998876    32 33556778899999999999999885 789999998776533211100000            


Q ss_pred             cccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecC-----
Q 005656          149 LKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG-----  223 (685)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d-----  223 (685)
                          .+.  .    ...+|.                     ..+       ........+.|||||+.|+.+..|     
T Consensus       155 ----~~~--~----g~~~~v---------------------~~e-------e~~~~~~~~~wSpDg~~la~~~~d~~~v~  196 (740)
T 4a5s_A          155 ----IIY--N----GITDWV---------------------YEE-------EVFSAYSALWWSPNGTFLAYAQFNDTEVP  196 (740)
T ss_dssp             ----TEE--E----SBCCHH---------------------HHH-------HTSSSSBCEEECTTSSEEEEEEEECTTCC
T ss_pred             ----cee--c----Cccccc---------------------ccc-------hhcCCCcceEECCCCCEEEEEEEcccCCc
Confidence                000  0    000000                     000       000222356777777777766422     


Q ss_pred             -------------------------------CcEEEEECCC---Ccc--ccccccccccccCCCCcCEEEEEEcCCCCEE
Q 005656          224 -------------------------------GWIERFNLQS---GIS--RGSYLDMSERSNYAHNGEVVGVACDSTNTLM  267 (685)
Q Consensus       224 -------------------------------g~i~~~d~~~---~~~--~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l  267 (685)
                                                     ..|++||+.+   +..  ...+..  .....+|...+..++|+|+|+.+
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~wspdg~~~  274 (740)
T 4a5s_A          197 LIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITA--PASMLIGDHYLCDVTWATQERIS  274 (740)
T ss_dssp             EEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECC--CHHHHTSCEEEEEEEEEETTEEE
T ss_pred             eEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecC--CccCCCCCeEEEEEEEeCCCeEE
Confidence                                           1578888888   631  111110  00001377889999999999976


Q ss_pred             EEEEC----CCeEEEEECCCCc----eE--EE---eecCCce-----eEEEEeecCCEEE-EEeC-C--CeEEEEEcCCC
Q 005656          268 ISAGY----HGDIKVWDFKGRD----LK--SR---WEVGCSL-----VKIVYHRVNGLLA-TVAD-D--LVIRLFDVVAL  325 (685)
Q Consensus       268 ~s~s~----dg~i~iwd~~~~~----~~--~~---~~~~~~i-----~~~~~~~~~~~l~-~~~~-d--g~I~i~d~~~~  325 (685)
                      +....    +..|++||+.+++    +.  ..   -.+...+     ....|+|||+.++ ..+. +  ..|++||+.++
T Consensus       275 ~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~  354 (740)
T 4a5s_A          275 LQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK  354 (740)
T ss_dssp             EEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS
T ss_pred             EEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCC
Confidence            65542    3479999999876    21  11   1122333     3688999999776 5553 3  47889999877


Q ss_pred             eeEEEEecCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEE--EcCCCceeeEEeec-----cceEEEEEcCCCCeEEE
Q 005656          326 RMVRKFEGHTDRITDFCFSEDGKWLLSSGMD-----GSLRIW--DVILARQIDAIHVD-----VSITALSLSPNMDVLAT  393 (685)
Q Consensus       326 ~~~~~~~~h~~~I~~l~~spdg~~l~s~s~D-----g~I~iw--d~~~~~~i~~~~~~-----~~v~~v~~spdg~~Lat  393 (685)
                      +..+ +......|..+.. +|++.|+..+..     +...+|  ++..+.....+...     .....+.|||+|++++.
T Consensus       355 ~~~~-lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~  432 (740)
T 4a5s_A          355 DCTF-ITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQL  432 (740)
T ss_dssp             SCEE-SCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEE
T ss_pred             ceEe-cccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEE
Confidence            6554 4444556666542 457666644432     334444  55444333233321     34889999999998877


Q ss_pred             EEeCC--CeEEEEEc
Q 005656          394 AHVDQ--NGVYLWVN  406 (685)
Q Consensus       394 ~~~d~--~~I~lW~~  406 (685)
                      .....  ..+++++.
T Consensus       433 ~~s~~~~p~~~l~~~  447 (740)
T 4a5s_A          433 RCSGPGLPLYTLHSS  447 (740)
T ss_dssp             EECSBSSCEEEEEET
T ss_pred             EeCCCCCCEEEEEEC
Confidence            66542  24566654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.85  E-value=7e-19  Score=182.22  Aligned_cols=278  Identities=13%  Similarity=0.061  Sum_probs=188.4

Q ss_pred             EEEEEeCC--CcEEEEeC--CCCeeeEEee--cccccCeeEEEEeCCCcEEEEecCCCcEEEEEec-CCCCCCceeEecc
Q 005656           17 LLASGASS--GVISIWNL--EKRRLQSVIR--EAHDNAIISLHFFANEPVLMSASADNSIKMWIFD-TTDGDPRLLRFRS   89 (685)
Q Consensus        17 ~latg~~d--g~I~vwd~--~~~~~~~~~~--~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~-~~~~~~~~~~~~~   89 (685)
                      .+++|+..  +.|.+|++  .++++...-.  .++...+..++|+|++++|++++.+ .|.+|+++ .+    ++.....
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g----~~~~~~~   78 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPT----EIVHEAS   78 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETT----EEEEEEE
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCC----CEEEeeE
Confidence            46667653  56888765  5666533211  1234578899999999999988887 99999997 43    3322211


Q ss_pred             c-CCCCCeEEEEecCCCE--EEEEe-------------CCCceEEEEeec-CceeeEechhhHHHHHhhccccccccccC
Q 005656           90 G-HSAPPLCIRFYANGRH--ILSAG-------------QDRAFRLFSVIQ-DQQSRELSQRHVAKRARKLKMKEEELKLK  152 (685)
Q Consensus        90 ~-h~~~v~~i~~~~~~~~--l~s~s-------------~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (685)
                      . ..+.+.+++|+|+|++  +++++             .+|++.+|++.. ++....+.                     
T Consensus        79 ~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~---------------------  137 (365)
T 1jof_A           79 HPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQ---------------------  137 (365)
T ss_dssp             EECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEE---------------------
T ss_pred             eecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEe---------------------
Confidence            1 1123667899999994  44553             688999999863 33221111                     


Q ss_pred             ceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec-CCcEEEEEC
Q 005656          153 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA-GGWIERFNL  231 (685)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-dg~i~~~d~  231 (685)
                                                   .+.              ......+.+++|+|+|++++++.. ++.|++|++
T Consensus       138 -----------------------------~~~--------------~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~  174 (365)
T 1jof_A          138 -----------------------------NYE--------------YQENTGIHGMVFDPTETYLYSADLTANKLWTHRK  174 (365)
T ss_dssp             -----------------------------EEE--------------CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             -----------------------------eEE--------------eCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEE
Confidence                                         000              023456889999999999887764 679999999


Q ss_pred             C-CCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC-CCeEEEEECC--CCceEE---Eee---cC----C---
Q 005656          232 Q-SGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-HGDIKVWDFK--GRDLKS---RWE---VG----C---  294 (685)
Q Consensus       232 ~-~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-dg~i~iwd~~--~~~~~~---~~~---~~----~---  294 (685)
                      . +++......    .....|...+..++|+|+|+++++++. ++.|.+|++.  ++++..   .+.   .+    .   
T Consensus       175 ~~~g~~~~~~~----~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~  250 (365)
T 1jof_A          175 LASGEVELVGS----VDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPET  250 (365)
T ss_dssp             CTTSCEEEEEE----EECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTT
T ss_pred             CCCCCEEEeee----EecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccc
Confidence            8 665432110    000124567899999999999888774 7899999875  455431   221   11    1   


Q ss_pred             ----ceeEEE-EeecCCEEEEEeCC-C-----eEEEEEcC-CCeeEE---EEecCCCCeEEEEEcC---CCCEEEEEeCC
Q 005656          295 ----SLVKIV-YHRVNGLLATVADD-L-----VIRLFDVV-ALRMVR---KFEGHTDRITDFCFSE---DGKWLLSSGMD  356 (685)
Q Consensus       295 ----~i~~~~-~~~~~~~l~~~~~d-g-----~I~i~d~~-~~~~~~---~~~~h~~~I~~l~~sp---dg~~l~s~s~D  356 (685)
                          .+..++ |+|+|++|+++..+ +     .|.+|++. +++...   ....+...+..++|+|   ||++|++++.+
T Consensus       251 ~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~  330 (365)
T 1jof_A          251 GKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ  330 (365)
T ss_dssp             SSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS
T ss_pred             ccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcC
Confidence                478899 99999988877643 2     89999996 666543   2334555677899999   89999999864


Q ss_pred             -CcEEEEEcCCC
Q 005656          357 -GSLRIWDVILA  367 (685)
Q Consensus       357 -g~I~iwd~~~~  367 (685)
                       +.|.+|++...
T Consensus       331 ~~~v~v~~~~~~  342 (365)
T 1jof_A          331 EGWLEIYRWKDE  342 (365)
T ss_dssp             SCEEEEEEEETT
T ss_pred             CCeEEEEEEchh
Confidence             89999998765

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.85  E-value=2.3e-19  Score=189.60  Aligned_cols=249  Identities=13%  Similarity=0.088  Sum_probs=173.0

Q ss_pred             CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCC-----------eee---EEeecccccCeeEEEEeCCCcEEE----Ee
Q 005656            3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKR-----------RLQ---SVIREAHDNAIISLHFFANEPVLM----SA   64 (685)
Q Consensus         3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~-----------~~~---~~~~~~h~~~V~~l~~sp~~~~l~----s~   64 (685)
                      ..++.+++++++. ++++|+.+| ++||+....           ...   ......|.+.|.+++|+|++++|+    ++
T Consensus        37 ~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg  114 (434)
T 2oit_A           37 ERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS  114 (434)
T ss_dssp             SCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred             CCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence            3578899999998 899998888 899875311           110   001114677899999999999999    88


Q ss_pred             cCCCcEEEEEecCCC-------CCCceeEecccCCCCCeEEEEecC-CCEEEEEeCCCceEEEEeecCceeeEechhhHH
Q 005656           65 SADNSIKMWIFDTTD-------GDPRLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVA  136 (685)
Q Consensus        65 s~D~~v~iWd~~~~~-------~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~  136 (685)
                      +.|++|++||+....       .....+..+.+|...|.+++|+|+ +.+|++++.||+|++||+.++.......     
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~-----  189 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATL-----  189 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEE-----
T ss_pred             CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeecc-----
Confidence            999999999987541       111235667789999999999998 8899999999999999998764322111     


Q ss_pred             HHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCE
Q 005656          137 KRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNF  216 (685)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  216 (685)
                                                                                     .+...+.+++|+|+|++
T Consensus       190 ---------------------------------------------------------------~~~~~v~~v~wspdg~~  206 (434)
T 2oit_A          190 ---------------------------------------------------------------PSTVAVTSVCWSPKGKQ  206 (434)
T ss_dssp             ---------------------------------------------------------------CGGGCEEEEEECTTSSC
T ss_pred             ---------------------------------------------------------------CCCCceeEEEEcCCCCE
Confidence                                                                           34567999999999999


Q ss_pred             EEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE-CCC------eEEEEECCCCce---
Q 005656          217 AVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHG------DIKVWDFKGRDL---  286 (685)
Q Consensus       217 l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg------~i~iwd~~~~~~---  286 (685)
                      +++|+.||.|++||++ +.....+.... .....|...|.+++|++++.++++.+ .||      .+++|++.+...   
T Consensus       207 lasgs~dg~v~iwd~~-~~~~~~~~~~~-~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~  284 (434)
T 2oit_A          207 LAVGKQNGTVVQYLPT-LQEKKVIPCPP-FYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHP  284 (434)
T ss_dssp             EEEEETTSCEEEECTT-CCEEEEECCCT-TCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCC
T ss_pred             EEEEcCCCcEEEEccC-CcccccccCCc-ccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCC
Confidence            9999999999999998 44433332100 00113456899999999887765543 443      389999986421   


Q ss_pred             --EEEe-ec-----C--CceeEEEEeecCCEEEEEeC-CCeEEEEEcC
Q 005656          287 --KSRW-EV-----G--CSLVKIVYHRVNGLLATVAD-DLVIRLFDVV  323 (685)
Q Consensus       287 --~~~~-~~-----~--~~i~~~~~~~~~~~l~~~~~-dg~I~i~d~~  323 (685)
                        ...+ ..     .  .+...+.+.++.+++++++. .+.|.++...
T Consensus       285 ~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~  332 (434)
T 2oit_A          285 EIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQ  332 (434)
T ss_dssp             CEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred             cceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEec
Confidence              1111 11     1  22233444577776666554 4557776643

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.84  E-value=4.7e-20  Score=194.95  Aligned_cols=206  Identities=14%  Similarity=0.120  Sum_probs=158.1

Q ss_pred             CCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccc-------cccccccccccCCCCcCEEEEEEcCCCCEEE----EE
Q 005656          202 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR-------GSYLDMSERSNYAHNGEVVGVACDSTNTLMI----SA  270 (685)
Q Consensus       202 ~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~-------~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~----s~  270 (685)
                      ...+..+++++++.++++|+.+| +.+|+.......       .............+...|.+++|+|++++|+    ++
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg  114 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS  114 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence            34578999999999999999888 888875421110       0000000001124667899999999999999    77


Q ss_pred             ECCCeEEEEECCCC--------ce---EEEee-cCCceeEEEEeec-CCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCC
Q 005656          271 GYHGDIKVWDFKGR--------DL---KSRWE-VGCSLVKIVYHRV-NGLLATVADDLVIRLFDVVALRMVRKFEGHTDR  337 (685)
Q Consensus       271 s~dg~i~iwd~~~~--------~~---~~~~~-~~~~i~~~~~~~~-~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~  337 (685)
                      +.|+.|++||+.++        +.   ...+. +...|.+++|+|+ +.+|++++.||+|++||++++..+....+|...
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~  194 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVA  194 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGC
T ss_pred             CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCc
Confidence            88999999998754        22   22222 3578999999998 789999999999999999999887778889999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeec--------cceEEEEEcCCCCeEEEEEeCC------CeEEE
Q 005656          338 ITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVD--------VSITALSLSPNMDVLATAHVDQ------NGVYL  403 (685)
Q Consensus       338 I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~--------~~v~~v~~spdg~~Lat~~~d~------~~I~l  403 (685)
                      |++++|+|+|++|++|+.||+|++||+. ++....+..+        ..|.+++|++++.++++.+...      ..+++
T Consensus       195 v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i  273 (434)
T 2oit_A          195 VTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVM  273 (434)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEE
T ss_pred             eeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEE
Confidence            9999999999999999999999999998 6555555322        1599999999998887655332      14899


Q ss_pred             EEcCCC
Q 005656          404 WVNRCM  409 (685)
Q Consensus       404 W~~~~~  409 (685)
                      |+.+..
T Consensus       274 ~~l~~~  279 (434)
T 2oit_A          274 ALLPKK  279 (434)
T ss_dssp             EECCCT
T ss_pred             EEeccC
Confidence            987643

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.84  E-value=8.1e-20  Score=191.44  Aligned_cols=312  Identities=10%  Similarity=0.018  Sum_probs=200.2

Q ss_pred             EEEeCCCCeeeEEeecccccC-----eeEEEEeCCCcEEEEecC-CC--cEEEEEecCCCCCCceeEecccCCCCCeEEE
Q 005656           28 SIWNLEKRRLQSVIREAHDNA-----IISLHFFANEPVLMSASA-DN--SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIR   99 (685)
Q Consensus        28 ~vwd~~~~~~~~~~~~~h~~~-----V~~l~~sp~~~~l~s~s~-D~--~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~   99 (685)
                      ..+|..++..+..+. .+...     +.+++|+|||++|+.++. ++  .|.+|++..+    +......++......+.
T Consensus        13 ~~~d~~~g~~~~~l~-~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~----~~~~l~~~~~~~~~~~~   87 (396)
T 3c5m_A           13 TFVDSDTQVKVTRLT-PTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQ----QAVQLTEGKGDNTFGGF   87 (396)
T ss_dssp             EEECTTTCCEEEECS-CTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTT----EEEECCCSSCBCTTTCE
T ss_pred             eeecCCCCcceEEEe-cCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCC----cEEEeecCCCCccccce
Confidence            455788887777765 44333     788999999998877654 33  5666666544    33333333333344478


Q ss_pred             EecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCce
Q 005656          100 FYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQ  179 (685)
Q Consensus       100 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (685)
                      |+|||++|+.++.++.|++|++.+++..........                     ...      +.. .+........
T Consensus        88 ~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~---------------------~~~------~g~-~l~~~~~~~~  139 (396)
T 3c5m_A           88 ISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEE---------------------WKG------YGT-WVANSDCTKL  139 (396)
T ss_dssp             ECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT---------------------EEE------EEE-EEECTTSSEE
T ss_pred             ECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccc---------------------cCC------CCC-EEEeccCCcc
Confidence            999999999999999999999877654333211000                     000      000 0000000001


Q ss_pred             EEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEE-----ecCCcEEEEECCCCccccccccccccccCCCCcC
Q 005656          180 AYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-----TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGE  254 (685)
Q Consensus       180 ~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-----~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~  254 (685)
                      ..+|.                     ..+.++|+++.++++     ..++.|++||+.++......         .+...
T Consensus       140 ~~~~~---------------------~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~---------~~~~~  189 (396)
T 3c5m_A          140 VGIEI---------------------LKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH---------QDTAW  189 (396)
T ss_dssp             EEEEE---------------------EGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE---------EESSC
T ss_pred             ccccc---------------------cccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec---------cCCcc
Confidence            11111                     113467888877665     35668999999988755433         45667


Q ss_pred             EEEEEEcC-CCCEEEEEECC------CeEEEEECCCCceEEEeec--CCceeEEEEeecCCEEEEEeCC-----CeEEEE
Q 005656          255 VVGVACDS-TNTLMISAGYH------GDIKVWDFKGRDLKSRWEV--GCSLVKIVYHRVNGLLATVADD-----LVIRLF  320 (685)
Q Consensus       255 v~~l~~~~-~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d-----g~I~i~  320 (685)
                      +..+.|+| +++.++.++.+      ..|.+||+.+++.......  ...+..+.|+|+|+.|+.++.+     +.|++|
T Consensus       190 ~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~  269 (396)
T 3c5m_A          190 LGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKA  269 (396)
T ss_dssp             EEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEE
T ss_pred             cccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEE
Confidence            89999999 78877766543      3688999877654443332  2357789999999977776543     459999


Q ss_pred             EcCCCeeEEEEecCCCCeEEEEEcC-CCCEEEEEe----------------CCCcEEEEEcCCCceeeEEeecc------
Q 005656          321 DVVALRMVRKFEGHTDRITDFCFSE-DGKWLLSSG----------------MDGSLRIWDVILARQIDAIHVDV------  377 (685)
Q Consensus       321 d~~~~~~~~~~~~h~~~I~~l~~sp-dg~~l~s~s----------------~Dg~I~iwd~~~~~~i~~~~~~~------  377 (685)
                      |+.+++...... ... .. +.|+| ||+++++++                .++.|++||+.+++.........      
T Consensus       270 d~~~g~~~~l~~-~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~  346 (396)
T 3c5m_A          270 NPETLENEEVMV-MPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLD  346 (396)
T ss_dssp             CTTTCCEEEEEE-CCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBT
T ss_pred             ECCCCCeEEeee-CCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCcccccc
Confidence            999886544332 222 33 89999 999888765                34789999998887644333332      


Q ss_pred             -----ceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656          378 -----SITALSLSPNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       378 -----~v~~v~~spdg~~Lat~~~d~~~I~lW~  405 (685)
                           .+..++|+|||+.|+.++.+.+...||.
T Consensus       347 ~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~  379 (396)
T 3c5m_A          347 GDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYI  379 (396)
T ss_dssp             TBSSTTCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred             ccccCCCCCceEccCCCeEEEEecCCCCceEEE
Confidence                 2567899999999998887655566664

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.83  E-value=1.3e-19  Score=189.98  Aligned_cols=298  Identities=10%  Similarity=0.022  Sum_probs=191.6

Q ss_pred             EEEEEEccCCCCEEEEEe-CC--CcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCC
Q 005656            5 VTALAFSSDGQPLLASGA-SS--GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD   81 (685)
Q Consensus         5 V~~l~fspdg~~~latg~-~d--g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~   81 (685)
                      +.+++|||||+ .|+.+. .+  ..|.+||+.+++...... ++......+.|+|||+.|+.++.++.|.+|++..+   
T Consensus        38 ~~~~~~SpdG~-~l~~~~~~~g~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~---  112 (396)
T 3c5m_A           38 FYQKCFTQDGK-KLLFAGDFDGNRNYYLLNLETQQAVQLTE-GKGDNTFGGFISTDERAFFYVKNELNLMKVDLETL---  112 (396)
T ss_dssp             TTSCCBCTTSC-EEEEEECTTSSCEEEEEETTTTEEEECCC-SSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTC---
T ss_pred             eecCcCCCCCC-EEEEEEecCCCceEEEEECCCCcEEEeec-CCCCccccceECCCCCEEEEEEcCCcEEEEECCCC---
Confidence            56788999999 555543 33  368889999988665543 34333445889999999999999999999988765   


Q ss_pred             CceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccc
Q 005656           82 PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE  161 (685)
Q Consensus        82 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (685)
                       ........+..      |+++|+.|+..+.++...+|.....     +.                              
T Consensus       113 -~~~~~~~~~~~------~~~~g~~l~~~~~~~~~~~~~~~~~-----~s------------------------------  150 (396)
T 3c5m_A          113 -EEQVIYTVDEE------WKGYGTWVANSDCTKLVGIEILKRD-----WQ------------------------------  150 (396)
T ss_dssp             -CEEEEEECCTT------EEEEEEEEECTTSSEEEEEEEEGGG-----CC------------------------------
T ss_pred             -CcEEEEecccc------cCCCCCEEEeccCCccccccccccc-----cC------------------------------
Confidence             22222222322      7778888887776666665542000     00                              


Q ss_pred             ccccCCcceEEEE----cCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEcc-CCCEEEEEecC------CcEEEEE
Q 005656          162 IRERDWCNVVTCH----MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAG------GWIERFN  230 (685)
Q Consensus       162 ~~~~~~~~~~~~~----~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~d------g~i~~~d  230 (685)
                         ++...++...    .....+++|++.........     .....+..+.|+| +|+.++..+.+      ..|++||
T Consensus       151 ---pdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-----~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d  222 (396)
T 3c5m_A          151 ---PLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-----QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVN  222 (396)
T ss_dssp             ---CCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-----EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEE
T ss_pred             ---CCCcceeeeeeccCCCcceEEEEECCCCcEEeec-----cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEE
Confidence               0000000000    12345667776553322111     2345688999999 88877776554      3688999


Q ss_pred             CCCCccccccccccccccCCC--CcCEEEEEEcCCCCEEEEEECC-----CeEEEEECCCCceEEEeecCCceeEEEEee
Q 005656          231 LQSGISRGSYLDMSERSNYAH--NGEVVGVACDSTNTLMISAGYH-----GDIKVWDFKGRDLKSRWEVGCSLVKIVYHR  303 (685)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~i~~~~~~~  303 (685)
                      +..+......         .+  ...+..++|+|+|++|+.++.+     +.|++||+.+++......... .. +.|+|
T Consensus       223 ~~~~~~~~l~---------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~  291 (396)
T 3c5m_A          223 EDGSNVRKIK---------EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSN  291 (396)
T ss_dssp             TTSCCCEESS---------CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEEC
T ss_pred             CCCCceeEee---------ccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-CC-CCccC
Confidence            8766533221         22  3358889999999988777644     459999999887655433332 33 89999


Q ss_pred             -cCCEEEEEe----------------CCCeEEEEEcCCCeeEEEEecCCC-----------CeEEEEEcCCCCEEEEEeC
Q 005656          304 -VNGLLATVA----------------DDLVIRLFDVVALRMVRKFEGHTD-----------RITDFCFSEDGKWLLSSGM  355 (685)
Q Consensus       304 -~~~~l~~~~----------------~dg~I~i~d~~~~~~~~~~~~h~~-----------~I~~l~~spdg~~l~s~s~  355 (685)
                       +|+++++++                .+..|++||+.+++.. .+..+..           .+..++|+|||++|+.++.
T Consensus       292 ~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~  370 (396)
T 3c5m_A          292 FDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSD  370 (396)
T ss_dssp             SSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred             CCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEec
Confidence             999888764                3478999999988753 4555544           2567899999998887764


Q ss_pred             -CCcEEEE--EcCCCce
Q 005656          356 -DGSLRIW--DVILARQ  369 (685)
Q Consensus       356 -Dg~I~iw--d~~~~~~  369 (685)
                       ++...+|  ++.++..
T Consensus       371 ~~~~~~l~~~~~~~~~~  387 (396)
T 3c5m_A          371 FEGVPAIYIADVPESYK  387 (396)
T ss_dssp             TTSSCEEEEEECCTTCC
T ss_pred             CCCCceEEEEEEccccc
Confidence             4554555  4455443

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.82  E-value=7.4e-19  Score=199.67  Aligned_cols=275  Identities=11%  Similarity=0.021  Sum_probs=185.8

Q ss_pred             ccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCC-----CeEEEEecCCCEEEEEeCC-------
Q 005656           46 DNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP-----PLCIRFYANGRHILSAGQD-------  113 (685)
Q Consensus        46 ~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~-----v~~i~~~~~~~~l~s~s~d-------  113 (685)
                      .....++.|+||+.+++++  |++|++|++.++    .....+.+|...     ...+.|||||++|+.++.+       
T Consensus        16 ~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~   89 (740)
T 4a5s_A           16 RLKLYSLRWISDHEYLYKQ--ENNILVFNAEYG----NSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHS   89 (740)
T ss_dssp             CCCCCCEEECSSSEEEEEE--TTEEEEEETTTC----CEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSC
T ss_pred             cccccccEECCCCcEEEEc--CCcEEEEECCCC----ceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEc
Confidence            3456789999999999886  899999999877    344445566533     2347899999999998876       


Q ss_pred             --CceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccC
Q 005656          114 --RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLG  191 (685)
Q Consensus       114 --g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~  191 (685)
                        +.+.+||+.+++...                                                               
T Consensus        90 ~~~~~~~~d~~~~~~~~---------------------------------------------------------------  106 (740)
T 4a5s_A           90 YTASYDIYDLNKRQLIT---------------------------------------------------------------  106 (740)
T ss_dssp             EEEEEEEEETTTTEECC---------------------------------------------------------------
T ss_pred             cceEEEEEECCCCcEEE---------------------------------------------------------------
Confidence              344577766554221                                                               


Q ss_pred             ceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccccc-ccccCCCC---------cCEEEEEEc
Q 005656          192 EHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMS-ERSNYAHN---------GEVVGVACD  261 (685)
Q Consensus       192 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~-~~~~~~h~---------~~v~~l~~~  261 (685)
                            ...+...+..++|||||+.++.+ .++.|++|++.++.......... .....++.         +...++.|+
T Consensus       107 ------l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wS  179 (740)
T 4a5s_A          107 ------EERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWS  179 (740)
T ss_dssp             ------SSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEEC
T ss_pred             ------cccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEEC
Confidence                  11445678999999999999888 56899999998887543221100 00000111         122358999


Q ss_pred             CCCCEEEEEECCC------------------------------------eEEEEECCC---C---ceEEEee------cC
Q 005656          262 STNTLMISAGYHG------------------------------------DIKVWDFKG---R---DLKSRWE------VG  293 (685)
Q Consensus       262 ~~~~~l~s~s~dg------------------------------------~i~iwd~~~---~---~~~~~~~------~~  293 (685)
                      |||+.|+.++.|.                                    +|++||+.+   +   +......      +.
T Consensus       180 pDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~  259 (740)
T 4a5s_A          180 PNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGD  259 (740)
T ss_dssp             TTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSC
T ss_pred             CCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCC
Confidence            9999999875321                                    588899988   7   3333222      34


Q ss_pred             CceeEEEEeecCCEEEEEeC----CCeEEEEEcCCCe----eE--EEE--ecCCCCeE-----EEEEcCCCCEEE-EEe-
Q 005656          294 CSLVKIVYHRVNGLLATVAD----DLVIRLFDVVALR----MV--RKF--EGHTDRIT-----DFCFSEDGKWLL-SSG-  354 (685)
Q Consensus       294 ~~i~~~~~~~~~~~l~~~~~----dg~I~i~d~~~~~----~~--~~~--~~h~~~I~-----~l~~spdg~~l~-s~s-  354 (685)
                      ..+..++|+|||++++....    +..|++||+.+++    +.  ..+  .+|...|.     ..+|+|||+.|+ ..+ 
T Consensus       260 ~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~  339 (740)
T 4a5s_A          260 HYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISN  339 (740)
T ss_dssp             EEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEEC
T ss_pred             eEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEc
Confidence            56889999999997666543    3479999999887    21  222  45666554     789999999887 665 


Q ss_pred             CCC--cEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeC
Q 005656          355 MDG--SLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVD  397 (685)
Q Consensus       355 ~Dg--~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d  397 (685)
                      .+|  .|++||+.++...........|..+.. +|++.|+..+..
T Consensus       340 ~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~-~d~~~i~f~~~~  383 (740)
T 4a5s_A          340 EEGYRHICYFQIDKKDCTFITKGTWEVIGIEA-LTSDYLYYISNE  383 (740)
T ss_dssp             TTSCEEEEEEETTCSSCEESCCSSSCEEEEEE-ECSSEEEEEESC
T ss_pred             CCCceEEEEEECCCCceEecccCCEEEEEEEE-EeCCEEEEEEec
Confidence            333  588899887776655445445666542 446666665543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.81  E-value=1.1e-18  Score=195.99  Aligned_cols=320  Identities=10%  Similarity=-0.007  Sum_probs=205.9

Q ss_pred             CCCcEEEEEEccCCCCEEEEE--eCCCcEEEEeCCCCeeeEEeecccccCee---------EEEEe--CCCcE-EEEecC
Q 005656            1 MRGAVTALAFSSDGQPLLASG--ASSGVISIWNLEKRRLQSVIREAHDNAII---------SLHFF--ANEPV-LMSASA   66 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg--~~dg~I~vwd~~~~~~~~~~~~~h~~~V~---------~l~~s--p~~~~-l~s~s~   66 (685)
                      |...|..++|++++- +++++  +.++...||....+.....+. .|...+.         ...|+  |||+. |+.++.
T Consensus        22 ~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~   99 (662)
T 3azo_A           22 RSGRPACVGAVGDEV-WWVAPRPAEAGRATLVRRRADGAEESAL-PAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHF   99 (662)
T ss_dssp             TCSCCEEEEEETTEE-EEEEEETTTTTEEEEEEECTTSCEEESS-CTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBT
T ss_pred             cCCccceeEEcCCeE-EEEecCcccCCcEEEEEECCCCCcceeC-CCCccccccccccCCccceeeeecCCCeEEEEEEC
Confidence            567899999998865 66666  557889999865444455555 5666666         66676  99998 776654


Q ss_pred             CCcEEEEEecCC--C-CCCceeEeccc-----CCCCCeEEEEecCCCEEEEEeCC----------CceEEEEeec-----
Q 005656           67 DNSIKMWIFDTT--D-GDPRLLRFRSG-----HSAPPLCIRFYANGRHILSAGQD----------RAFRLFSVIQ-----  123 (685)
Q Consensus        67 D~~v~iWd~~~~--~-~~~~~~~~~~~-----h~~~v~~i~~~~~~~~l~s~s~d----------g~i~vwd~~~-----  123 (685)
                      . ...||.++..  . +..+.   +..     |...+.+++|+|||+.|++++.+          ..|++|++.+     
T Consensus       100 ~-~~~l~~~~~~~~g~~~~~~---l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  175 (662)
T 3azo_A          100 G-DQRLYAFEPDAPGGAVPRP---LTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD  175 (662)
T ss_dssp             T-TCCEEEECTTSTTCCCCEE---CSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred             C-CCeEEEEcCCCCCCCCCEe---ccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcccc
Confidence            2 4455555543  1 22222   223     66778899999999999998876          4677777654     


Q ss_pred             -CceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCC
Q 005656          124 -DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP  202 (685)
Q Consensus       124 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  202 (685)
                       +.. ..+.                                                                   ..+.
T Consensus       176 ~~~~-~~l~-------------------------------------------------------------------~~~~  187 (662)
T 3azo_A          176 RSAV-RELS-------------------------------------------------------------------DDAH  187 (662)
T ss_dssp             GGGS-EESS-------------------------------------------------------------------CSCS
T ss_pred             CCce-eEEE-------------------------------------------------------------------ecCC
Confidence             221 1110                                                                   0123


Q ss_pred             CCeEEEEEccCCCEEEEEecC--------CcEEEEECC-CC---ccccccccccccccCCCCcCEEEEEEcCCCCEEEEE
Q 005656          203 TAVKACTISACGNFAVLGTAG--------GWIERFNLQ-SG---ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA  270 (685)
Q Consensus       203 ~~v~~~~~s~~g~~l~~g~~d--------g~i~~~d~~-~~---~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~  270 (685)
                      ..+..++|||||++|+.++.+        ..|++||+. ++   ......        ..|...+..+.|+|+|++++++
T Consensus       188 ~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~--------~~~~~~~~~~~~spdg~l~~~~  259 (662)
T 3azo_A          188 RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL--------GGPEEAIAQAEWAPDGSLIVAT  259 (662)
T ss_dssp             SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE--------EETTBCEEEEEECTTSCEEEEE
T ss_pred             CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC--------CCCCceEcceEECCCCeEEEEE
Confidence            456678999999999988755        379999998 56   222221        1457889999999999977888


Q ss_pred             ECCC--eEEEEECCCCceEEEeecCCc---------eeEEEEeecCCEEEEEeCCCeEEEE--EcCCCeeEEEEecCCCC
Q 005656          271 GYHG--DIKVWDFKGRDLKSRWEVGCS---------LVKIVYHRVNGLLATVADDLVIRLF--DVVALRMVRKFEGHTDR  337 (685)
Q Consensus       271 s~dg--~i~iwd~~~~~~~~~~~~~~~---------i~~~~~~~~~~~l~~~~~dg~I~i~--d~~~~~~~~~~~~h~~~  337 (685)
                      +.++  .|.+||..+++.......+..         +..++|+|++++++++.. +.++||  |+.+++ ++.+..|...
T Consensus       260 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~  337 (662)
T 3azo_A          260 DRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTE  337 (662)
T ss_dssp             CTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCE
T ss_pred             CCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCe
Confidence            7888  677777767766554443322         467889999999999998 988888  555565 6778888887


Q ss_pred             eEEE-EEcCCCCEEEEEeCCC--cEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656          338 ITDF-CFSEDGKWLLSSGMDG--SLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       338 I~~l-~~spdg~~l~s~s~Dg--~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~  405 (685)
                      +..+ +++++.-++++++.+.  .|.+||+.+++.......+.. +....+++...+.+. +.++..|..|-
T Consensus       338 ~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~dg~~i~~~~  408 (662)
T 3azo_A          338 WAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIGARHTDPVDPAYYPEPQIRTFT-APDGREIHAHI  408 (662)
T ss_dssp             EEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEESCCCCSSCGGGSCCCEEEEEE-CTTSCEEEEEE
T ss_pred             EEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecCCcccCCccccCcceEEEEE-cCCCCEEEEEE
Confidence            8776 4433332334445554  455667767765443333322 222233333333333 23444666664

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.81  E-value=1.6e-16  Score=171.98  Aligned_cols=320  Identities=11%  Similarity=0.055  Sum_probs=226.3

Q ss_pred             EEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEec--CCCCCCceeEecccCCCC
Q 005656           17 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD--TTDGDPRLLRFRSGHSAP   94 (685)
Q Consensus        17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~--~~~~~~~~~~~~~~h~~~   94 (685)
                      ++++...++.|.+||..+++.+..+..  ...+.++.|+|||+++++++.|+.|.+||+.  +.    +.+..+.. ...
T Consensus       169 ~~V~~~~~~~V~viD~~t~~v~~~i~~--g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~----~~v~~i~~-G~~  241 (567)
T 1qks_A          169 FSVTLRDAGQIALIDGSTYEIKTVLDT--GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP----TTVAEIKI-GSE  241 (567)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEEC--SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSC----CEEEEEEC-CSE
T ss_pred             EEEEeCCCCeEEEEECCCCeEEEEEeC--CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCC----cEeEEEec-CCC
Confidence            677777899999999999999988873  3357799999999999999999999999985  33    44444433 234


Q ss_pred             CeEEEEe----cCCCEEEEEeC-CCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcc
Q 005656           95 PLCIRFY----ANGRHILSAGQ-DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCN  169 (685)
Q Consensus        95 v~~i~~~----~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (685)
                      +..++|+    |||+++++++. ++++.++|..+.+....+......                                 
T Consensus       242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~---------------------------------  288 (567)
T 1qks_A          242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT---------------------------------  288 (567)
T ss_dssp             EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEEC---------------------------------
T ss_pred             CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccc---------------------------------
Confidence            6899999    69999888765 589999998887766555311000                                 


Q ss_pred             eEEEEcCCceEEEEEcCccccCceeecCCCCC-CCCeEEEEEccCCCEEE-EEecCCcEEEEECCCCccccccccccccc
Q 005656          170 VVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN-PTAVKACTISACGNFAV-LGTAGGWIERFNLQSGISRGSYLDMSERS  247 (685)
Q Consensus       170 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~-~g~~dg~i~~~d~~~~~~~~~~~~~~~~~  247 (685)
                                               ......+ ...+..+..++++..++ ....+|.|.++|..+........      
T Consensus       289 -------------------------~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~------  337 (567)
T 1qks_A          289 -------------------------YDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTE------  337 (567)
T ss_dssp             -------------------------TTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEE------
T ss_pred             -------------------------cccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeee------
Confidence                                     0000001 12567788888766544 44566999999987654221110      


Q ss_pred             cCCCCcCEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCceEEEeec-C---CceeEEE-EeecCCEE-EEEe-CCCeEEE
Q 005656          248 NYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWEV-G---CSLVKIV-YHRVNGLL-ATVA-DDLVIRL  319 (685)
Q Consensus       248 ~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~-~---~~i~~~~-~~~~~~~l-~~~~-~dg~I~i  319 (685)
                       ........++.|+|++++++++. .++.|.++|+.++++...+.. .   .+-.... ++|++..+ +++. .++.|.+
T Consensus       338 -i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsv  416 (567)
T 1qks_A          338 -ISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVAL  416 (567)
T ss_dssp             -EECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEE
T ss_pred             -eeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEE
Confidence             02334566889999999887766 678999999999998877765 2   1111222 57875544 4443 4689999


Q ss_pred             EEcCC-------CeeEEEEecCCCCeEEEEEcCCCCEEEEEeC-------CCcEEEEEcCCC-----c-eeeEEee----
Q 005656          320 FDVVA-------LRMVRKFEGHTDRITDFCFSEDGKWLLSSGM-------DGSLRIWDVILA-----R-QIDAIHV----  375 (685)
Q Consensus       320 ~d~~~-------~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~-------Dg~I~iwd~~~~-----~-~i~~~~~----  375 (685)
                      +|..+       .+.++++......-..+..+|++++|.+...       .++|.++|+.+.     . ....+..    
T Consensus       417 id~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~  496 (567)
T 1qks_A          417 IGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWA  496 (567)
T ss_dssp             EECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHH
T ss_pred             ecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEecccccc
Confidence            99988       7788988865444456789999999988763       358999999877     2 1233321    


Q ss_pred             -----ccceEEEEEcCCCCeEEEEEe----CCCeEEEEEcCC
Q 005656          376 -----DVSITALSLSPNMDVLATAHV----DQNGVYLWVNRC  408 (685)
Q Consensus       376 -----~~~v~~v~~spdg~~Lat~~~----d~~~I~lW~~~~  408 (685)
                           ...+..+.|+|+|+++.++..    +.+.|.|+|.+.
T Consensus       497 ~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t  538 (567)
T 1qks_A          497 GITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKT  538 (567)
T ss_dssp             TCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred             ccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCC
Confidence                 335899999999999888854    245899998654

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.79  E-value=4.8e-17  Score=165.70  Aligned_cols=250  Identities=14%  Similarity=0.144  Sum_probs=183.3

Q ss_pred             CcEEEEEEccCCCCEEEEEeCC------------------------CcEEEEeCCCCeeeEEeecccccCeeEEEEeCCC
Q 005656            3 GAVTALAFSSDGQPLLASGASS------------------------GVISIWNLEKRRLQSVIREAHDNAIISLHFFANE   58 (685)
Q Consensus         3 ~~V~~l~fspdg~~~latg~~d------------------------g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~   58 (685)
                      +.|.+++|+|+|+ ++++...+                        +.|.+||..+++.......++-.....++++|+|
T Consensus        24 ~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           24 GQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             SCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             CCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            5689999999998 88877766                        4799999999988776654566688999999999


Q ss_pred             cEEEEecCCCcEEEEEecCCCCCCceeEec---------ccCCCCCeEEEEec-CCCEEEEEe-CCCceEEEEeecCcee
Q 005656           59 PVLMSASADNSIKMWIFDTTDGDPRLLRFR---------SGHSAPPLCIRFYA-NGRHILSAG-QDRAFRLFSVIQDQQS  127 (685)
Q Consensus        59 ~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~---------~~h~~~v~~i~~~~-~~~~l~s~s-~dg~i~vwd~~~~~~~  127 (685)
                      +++++...++.|++|+.+...   ..+..+         .++-..+..++++| ++..+++.+ .++.|++|+. ++...
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~---~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~~~  178 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKE---GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGKFV  178 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSS---CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSCEE
T ss_pred             CEEEEECCCCEEEEEeCCCCe---EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCCEE
Confidence            999999889999999865331   123322         24455688999999 677777765 5888888873 33222


Q ss_pred             eEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEE
Q 005656          128 RELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKA  207 (685)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~  207 (685)
                      ..+..                                                                           
T Consensus       179 ~~~~~---------------------------------------------------------------------------  183 (329)
T 3fvz_A          179 TQWGE---------------------------------------------------------------------------  183 (329)
T ss_dssp             EEECE---------------------------------------------------------------------------
T ss_pred             EEecc---------------------------------------------------------------------------
Confidence            21110                                                                           


Q ss_pred             EEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCC-CCEEEEEECCCeEEEEECCCCce
Q 005656          208 CTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMISAGYHGDIKVWDFKGRDL  286 (685)
Q Consensus       208 ~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~s~dg~i~iwd~~~~~~  286 (685)
                                   ...+          ..          ...++-....+++++|+ +.++++...++.|++||..+++.
T Consensus       184 -------------~g~~----------~~----------~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~  230 (329)
T 3fvz_A          184 -------------ESSG----------SS----------PRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEF  230 (329)
T ss_dssp             -------------ECCS----------SS----------CCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE
T ss_pred             -------------CCCC----------CC----------CCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcE
Confidence                         0000          00          00023345789999998 66667777889999999998888


Q ss_pred             EEEeec---CCceeEEEEeecCCEEEE-------EeCCCeEEEEEcCCCeeEEEEe---cCCCCeEEEEEcCCCCEEEEE
Q 005656          287 KSRWEV---GCSLVKIVYHRVNGLLAT-------VADDLVIRLFDVVALRMVRKFE---GHTDRITDFCFSEDGKWLLSS  353 (685)
Q Consensus       287 ~~~~~~---~~~i~~~~~~~~~~~l~~-------~~~dg~I~i~d~~~~~~~~~~~---~h~~~I~~l~~spdg~~l~s~  353 (685)
                      +..+..   ...+..++++| +..+++       ...+..|++||..+++.+..+.   ++...+.+++++|+|.++++.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad  309 (329)
T 3fvz_A          231 VREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGD  309 (329)
T ss_dssp             EEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEE
T ss_pred             EEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEE
Confidence            887753   35678889998 333333       3345589999999999998884   677789999999999888888


Q ss_pred             eCCCcEEEEEcCC
Q 005656          354 GMDGSLRIWDVIL  366 (685)
Q Consensus       354 s~Dg~I~iwd~~~  366 (685)
                      ..++.|++|++..
T Consensus       310 ~~~~~I~~~~~~~  322 (329)
T 3fvz_A          310 AHTNTVWKFTLTE  322 (329)
T ss_dssp             SSSCCEEEEEEEE
T ss_pred             CCCCEEEEEeCCc
Confidence            8999999999754

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.78  E-value=1.1e-16  Score=164.94  Aligned_cols=270  Identities=12%  Similarity=0.098  Sum_probs=187.5

Q ss_pred             EEEEccCCCCEEEEEe----------CCCcEEEEeCCCCeeeEEeecc-----cccCeeEEEEeCCCcEEEEecC--CCc
Q 005656            7 ALAFSSDGQPLLASGA----------SSGVISIWNLEKRRLQSVIREA-----HDNAIISLHFFANEPVLMSASA--DNS   69 (685)
Q Consensus         7 ~l~fspdg~~~latg~----------~dg~I~vwd~~~~~~~~~~~~~-----h~~~V~~l~~sp~~~~l~s~s~--D~~   69 (685)
                      .++|+|||+ ++++++          .++.|.+||..+++.+..+...     +......++|+|||++|+++..  +++
T Consensus        54 ~i~~spdg~-~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~  132 (361)
T 2oiz_A           54 HVQVSNDGK-KIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATS  132 (361)
T ss_dssp             EEEECTTSS-EEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEE
T ss_pred             ceEECCCCC-EEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCe
Confidence            789999999 666664          3567999999999888887622     2345778999999999988763  689


Q ss_pred             EEEEEecCCCCCCceeEe-cccCCCCCeEEEEecCC-CEEEEEeCCCceEEEEeec-CceeeEechhhHHHHHhhccccc
Q 005656           70 IKMWIFDTTDGDPRLLRF-RSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQ-DQQSRELSQRHVAKRARKLKMKE  146 (685)
Q Consensus        70 v~iWd~~~~~~~~~~~~~-~~~h~~~v~~i~~~~~~-~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~  146 (685)
                      |.+||+.+.    +.+.. +.. .. ...+.+.|++ ..+++.+.||.+.+|++.. ++.......              
T Consensus       133 v~v~d~~~~----~~~~~~i~~-~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~--------------  192 (361)
T 2oiz_A          133 IGIVDVAKG----DYVEDVTAA-AG-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRS--------------  192 (361)
T ss_dssp             EEEEETTTT----EEEEEEGGG-TT-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEEC--------------
T ss_pred             EEEEECCCC----cEEEEEecC-CC-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccc--------------
Confidence            999999876    55555 432 11 2335677875 6778889999999998864 322111000              


Q ss_pred             cccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcE
Q 005656          147 EELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWI  226 (685)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i  226 (685)
                                                       ..+|+               .... ...+.+++++..++..+.+|.+
T Consensus       193 ---------------------------------~~~~~---------------~~~~-~~~~~~~~~g~~~~~~~~~~~v  223 (361)
T 2oiz_A          193 ---------------------------------KQMFS---------------VKDD-PIFIAPALDKDKAHFVSYYGNV  223 (361)
T ss_dssp             ---------------------------------CCCSC---------------TTTS-CBCSCCEECSSEEEEEBTTSEE
T ss_pred             ---------------------------------cceEc---------------CCCC-ceEEEecccCCEEEEEeCCCeE
Confidence                                             00000               0001 1122235667777777788999


Q ss_pred             EEEECCCCcccc--cccccc--ccccCCCCcCEEEEEEcCCCCEEEEEEC-----------CCeEEEEECCCCceEEEee
Q 005656          227 ERFNLQSGISRG--SYLDMS--ERSNYAHNGEVVGVACDSTNTLMISAGY-----------HGDIKVWDFKGRDLKSRWE  291 (685)
Q Consensus       227 ~~~d~~~~~~~~--~~~~~~--~~~~~~h~~~v~~l~~~~~~~~l~s~s~-----------dg~i~iwd~~~~~~~~~~~  291 (685)
                      +++|+..+....  .+....  .............++++|+++.++++..           .+.|.+||+.+++.+..+.
T Consensus       224 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~  303 (361)
T 2oiz_A          224 YSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIP  303 (361)
T ss_dssp             EEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEE
T ss_pred             EEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEe
Confidence            999987654221  110000  0000000111123688999887776643           3589999999999999998


Q ss_pred             cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCC--eeEEEEecCCCCeEEEEEcCCCC
Q 005656          292 VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL--RMVRKFEGHTDRITDFCFSEDGK  348 (685)
Q Consensus       292 ~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~--~~~~~~~~h~~~I~~l~~spdg~  348 (685)
                      .+. +..++|+|+|++|++++. +.|.+||..++  +.+.++..+......++++|+|+
T Consensus       304 ~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          304 GRD-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             CTT-CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             cCC-eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            888 999999999999998887 99999999999  99999877778889999999986

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.78  E-value=1.2e-16  Score=163.04  Aligned_cols=270  Identities=11%  Similarity=0.054  Sum_probs=196.5

Q ss_pred             ccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCc
Q 005656           46 DNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ  125 (685)
Q Consensus        46 ~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~  125 (685)
                      ...|.++.|++++..++..+.++.++.|.   .    .....+..+...+.+++|+++|+.++++..++.|.+||..+++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~   77 (333)
T 2dg1_A            5 QQDLPTLFYSGKSNSAVPIISESELQTIT---A----EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE   77 (333)
T ss_dssp             -CCCCBCCSCGGGGCSSCCCCGGGSCEEE---C----EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred             ccccceeeecCCccceeEEeecccCcccc---c----ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc
Confidence            34578899999988888888899999992   2    3444555677778999999999977788888999999886654


Q ss_pred             eeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCe
Q 005656          126 QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAV  205 (685)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v  205 (685)
                      ......                                                                    .....+
T Consensus        78 ~~~~~~--------------------------------------------------------------------~~~~~~   89 (333)
T 2dg1_A           78 IKRPFV--------------------------------------------------------------------SHKANP   89 (333)
T ss_dssp             EEEEEE--------------------------------------------------------------------CSSSSE
T ss_pred             EEEEee--------------------------------------------------------------------CCCCCc
Confidence            322110                                                                    123568


Q ss_pred             EEEEEccCCCEEEEEecC----CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC------CCe
Q 005656          206 KACTISACGNFAVLGTAG----GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY------HGD  275 (685)
Q Consensus       206 ~~~~~s~~g~~l~~g~~d----g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~------dg~  275 (685)
                      .+++++++|+.++++..+    +.|.+||..++.....+..      ..+...+.+++++|+|+++++...      .+.
T Consensus        90 ~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~  163 (333)
T 2dg1_A           90 AAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIED------LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGG  163 (333)
T ss_dssp             EEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECS------SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEE
T ss_pred             ceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEcc------CccCCcccceEECCCCCEEEEeccccccCCCce
Confidence            899999999988777666    6899999988765422210      134467899999999987776653      356


Q ss_pred             EEEEECCCCceEEEeecCCceeEEEEeecCCEEEEE-eCCCeEEEEEcCC-CeeEEE--------EecCCCCeEEEEEcC
Q 005656          276 IKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV-ADDLVIRLFDVVA-LRMVRK--------FEGHTDRITDFCFSE  345 (685)
Q Consensus       276 i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~I~i~d~~~-~~~~~~--------~~~h~~~I~~l~~sp  345 (685)
                      |..||..+++..........+..++++|+++.++++ ..++.|++||+.+ +..+..        +.++ ..+..+++++
T Consensus       164 l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~  242 (333)
T 2dg1_A          164 VYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDS  242 (333)
T ss_dssp             EEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBT
T ss_pred             EEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECC
Confidence            777776665554433333567889999999865544 5678999999963 332221        1222 4678899999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeeEEeecc-------ceEEEEEcCCCCeEEEEEeCC
Q 005656          346 DGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-------SITALSLSPNMDVLATAHVDQ  398 (685)
Q Consensus       346 dg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~-------~v~~v~~spdg~~Lat~~~d~  398 (685)
                      +|+++++...++.|.+||. .++.+..+..+.       .+.+++|+||++.|++++.++
T Consensus       243 ~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          243 DDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             TCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             CCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence            9998888878899999997 577777776543       489999999998888777663

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.77  E-value=7.3e-17  Score=164.73  Aligned_cols=270  Identities=11%  Similarity=0.020  Sum_probs=191.9

Q ss_pred             CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCC
Q 005656            3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP   82 (685)
Q Consensus         3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~   82 (685)
                      +.|.+++|++++. .++..+.++.++.|   .++....+. .+...+.+++|+|++++++++..++.|.+|+.+.+    
T Consensus         6 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~----   76 (333)
T 2dg1_A            6 QDLPTLFYSGKSN-SAVPIISESELQTI---TAEPWLEIS-KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETK----   76 (333)
T ss_dssp             CCCCBCCSCGGGG-CSSCCCCGGGSCEE---ECEEEEEEE-SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTC----
T ss_pred             cccceeeecCCcc-ceeEEeecccCccc---ccceeEEEe-ccCccccCcEECCCCCEEEEECCCCEEEEEeCCCC----
Confidence            5688899999987 56666778899999   455566665 66677899999999998888888999999987654    


Q ss_pred             ceeEecccCCCCCeEEEEecCCCEEEEEeCC----CceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeee
Q 005656           83 RLLRFRSGHSAPPLCIRFYANGRHILSAGQD----RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD  158 (685)
Q Consensus        83 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (685)
                      +.......+...+.+++|+|+|+.+++...+    +.|.+||..++.....+..                          
T Consensus        77 ~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~--------------------------  130 (333)
T 2dg1_A           77 EIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIED--------------------------  130 (333)
T ss_dssp             CEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECS--------------------------
T ss_pred             cEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEcc--------------------------
Confidence            3333222456789999999999877776666    6788888765543211100                          


Q ss_pred             cccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec------CCcEEEEECC
Q 005656          159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA------GGWIERFNLQ  232 (685)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~------dg~i~~~d~~  232 (685)
                                                              ......+..++++|+|+.+++...      .+.|+.||..
T Consensus       131 ----------------------------------------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~  170 (333)
T 2dg1_A          131 ----------------------------------------LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD  170 (333)
T ss_dssp             ----------------------------------------SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT
T ss_pred             ----------------------------------------CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCC
Confidence                                                    012346889999999987776553      3567777776


Q ss_pred             CCccccccccccccccCCCCcCEEEEEEcCCCCEEEEE-ECCCeEEEEECCC-CceEEE--------eecCCceeEEEEe
Q 005656          233 SGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA-GYHGDIKVWDFKG-RDLKSR--------WEVGCSLVKIVYH  302 (685)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-s~dg~i~iwd~~~-~~~~~~--------~~~~~~i~~~~~~  302 (685)
                      ++......         .+...+.+++|+|+++.++.+ +.++.|.+||+.+ +.....        +.....+..++++
T Consensus       171 ~~~~~~~~---------~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d  241 (333)
T 2dg1_A          171 FRTVTPII---------QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCID  241 (333)
T ss_dssp             SCCEEEEE---------EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEB
T ss_pred             CCEEEEee---------cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEEC
Confidence            55443221         223457899999999866544 4678999999963 332211        1112367889999


Q ss_pred             ecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCC------CeEEEEEcCCCCEEEEEeCCC
Q 005656          303 RVNGLLATVADDLVIRLFDVVALRMVRKFEGHTD------RITDFCFSEDGKWLLSSGMDG  357 (685)
Q Consensus       303 ~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~------~I~~l~~spdg~~l~s~s~Dg  357 (685)
                      ++|+++++...++.|.+||. +++.+..+..+..      .+.+++|+||++.|+.++.++
T Consensus       242 ~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          242 SDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             TTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             CCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence            99998888878899999998 5667777765433      689999999988777665553

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.76  E-value=9.3e-17  Score=180.40  Aligned_cols=271  Identities=8%  Similarity=-0.033  Sum_probs=183.0

Q ss_pred             ccccCeeEEEEeCCCcEEEEe--cCCCcEEEEEecCCCCCCceeEecccCCCCCe---------EEEEe--cCCCE-EEE
Q 005656           44 AHDNAIISLHFFANEPVLMSA--SADNSIKMWIFDTTDGDPRLLRFRSGHSAPPL---------CIRFY--ANGRH-ILS  109 (685)
Q Consensus        44 ~h~~~V~~l~~sp~~~~l~s~--s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~---------~i~~~--~~~~~-l~s  109 (685)
                      +|...+..++|++++-++++.  +.++...||....+ +   ....+..|...+.         ...|+  |||+. |+.
T Consensus        21 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~-~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~   96 (662)
T 3azo_A           21 SRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRAD-G---AEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF   96 (662)
T ss_dssp             HTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTT-S---CEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred             hcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCC-C---CcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence            788999999999887777777  66889999987433 2   2344455665555         56666  99998 776


Q ss_pred             EeC-CCceEEEEee--cCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcC
Q 005656          110 AGQ-DRAFRLFSVI--QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ  186 (685)
Q Consensus       110 ~s~-dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  186 (685)
                      ++. +..|.+|++.  .......+...                                                     
T Consensus        97 ~~~~~~~l~~~~~~~~g~~~~~~l~~~-----------------------------------------------------  123 (662)
T 3azo_A           97 THFGDQRLYAFEPDAPGGAVPRPLTPV-----------------------------------------------------  123 (662)
T ss_dssp             EBTTTCCEEEECTTSTTCCCCEECSCC-----------------------------------------------------
T ss_pred             EECCCCeEEEEcCCCCCCCCCEeccCC-----------------------------------------------------
Confidence            553 3444444432  10222222100                                                     


Q ss_pred             ccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecC----------CcEEEEECCC------CccccccccccccccCC
Q 005656          187 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG----------GWIERFNLQS------GISRGSYLDMSERSNYA  250 (685)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d----------g~i~~~d~~~------~~~~~~~~~~~~~~~~~  250 (685)
                                ....+...+..++|+|+|+.|++++.+          ..|++||+.+      +......        ..
T Consensus       124 ----------~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~--------~~  185 (662)
T 3azo_A          124 ----------SAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELS--------DD  185 (662)
T ss_dssp             ----------CCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESS--------CS
T ss_pred             ----------ccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEE--------ec
Confidence                      000134567899999999999998876          5899999987      4432211        03


Q ss_pred             CCcCEEEEEEcCCCCEEEEEECC--------CeEEEEECC-CC---ceEEEeec-CCceeEEEEeecCCEEEEEeCCC--
Q 005656          251 HNGEVVGVACDSTNTLMISAGYH--------GDIKVWDFK-GR---DLKSRWEV-GCSLVKIVYHRVNGLLATVADDL--  315 (685)
Q Consensus       251 h~~~v~~l~~~~~~~~l~s~s~d--------g~i~iwd~~-~~---~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg--  315 (685)
                      +...+..++|+|+|++|+.++.+        ..|++||+. ++   +....... ...+..+.|+|||++++++..++  
T Consensus       186 ~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~  265 (662)
T 3azo_A          186 AHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWW  265 (662)
T ss_dssp             CSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSC
T ss_pred             CCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCe
Confidence            34677889999999999988755        379999999 56   44444444 47889999999999888888888  


Q ss_pred             eEEEEEcCCCeeEEEEecCCCC--------eEEEEEcCCCCEEEEEeCCCcEEEE--EcCCCceeeEEeeccc-eEEEEE
Q 005656          316 VIRLFDVVALRMVRKFEGHTDR--------ITDFCFSEDGKWLLSSGMDGSLRIW--DVILARQIDAIHVDVS-ITALSL  384 (685)
Q Consensus       316 ~I~i~d~~~~~~~~~~~~h~~~--------I~~l~~spdg~~l~s~s~Dg~I~iw--d~~~~~~i~~~~~~~~-v~~v~~  384 (685)
                      .|++||+.+++......++...        +..++|+|+++++++++. +.+++|  |+.+++ +..+..+.. +.++ |
T Consensus       266 ~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~-~  342 (662)
T 3azo_A          266 NLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAAT-L  342 (662)
T ss_dssp             EEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEE-E
T ss_pred             EEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEE-E
Confidence            6777777677655444433322        567899999999999998 999999  555555 555554443 6666 1


Q ss_pred             cCCCCeEE
Q 005656          385 SPNMDVLA  392 (685)
Q Consensus       385 spdg~~La  392 (685)
                      +++++.++
T Consensus       343 s~~~~~~~  350 (662)
T 3azo_A          343 TVSGTRAV  350 (662)
T ss_dssp             EEETTEEE
T ss_pred             ecCCCEEE
Confidence            44554333

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.76  E-value=5.2e-16  Score=154.64  Aligned_cols=242  Identities=12%  Similarity=0.152  Sum_probs=177.3

Q ss_pred             ccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecc------cCCCCCeEEEEe-cCCCEEEEEeC-CCc
Q 005656           44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS------GHSAPPLCIRFY-ANGRHILSAGQ-DRA  115 (685)
Q Consensus        44 ~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~------~h~~~v~~i~~~-~~~~~l~s~s~-dg~  115 (685)
                      +|-..+.++++++++.++++.+.++.|.+|+.+.     ..+..+.      +|...+..+++. ++++.+++... ++.
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-----~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~  101 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-----RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQ  101 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-----CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCCC-----cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCE
Confidence            5567789999999999999888899999998652     2333322      344578899995 66765555533 788


Q ss_pred             eEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceee
Q 005656          116 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL  195 (685)
Q Consensus       116 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  195 (685)
                      |.+|+ .+++....+..                                                               
T Consensus       102 i~~~d-~~g~~~~~~~~---------------------------------------------------------------  117 (286)
T 1q7f_A          102 IQIYN-QYGQFVRKFGA---------------------------------------------------------------  117 (286)
T ss_dssp             EEEEC-TTSCEEEEECT---------------------------------------------------------------
T ss_pred             EEEEC-CCCcEEEEecC---------------------------------------------------------------
Confidence            99998 44443332210                                                               


Q ss_pred             cCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCe
Q 005656          196 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD  275 (685)
Q Consensus       196 ~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~  275 (685)
                          .....+..++++++|+.+++...++.|.+||.. +.....+.      ...+...+.+++++++++++++...++.
T Consensus       118 ----~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~------~~~~~~~p~~i~~~~~g~l~v~~~~~~~  186 (286)
T 1q7f_A          118 ----TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFG------CSKHLEFPNGVVVNDKQEIFISDNRAHC  186 (286)
T ss_dssp             ----TTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEE------CTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred             ----ccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeC------CCCccCCcEEEEECCCCCEEEEECCCCE
Confidence                123457899999999988887888999999964 44333331      1134456899999999987777778899


Q ss_pred             EEEEECCCCceEEEeecC---CceeEEEEeecCCEEEEEeCCC-eEEEEEcCCCeeEEEEecCCC--CeEEEEEcCCCCE
Q 005656          276 IKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVADDL-VIRLFDVVALRMVRKFEGHTD--RITDFCFSEDGKW  349 (685)
Q Consensus       276 i~iwd~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~dg-~I~i~d~~~~~~~~~~~~h~~--~I~~l~~spdg~~  349 (685)
                      |++||.. ++.+..+...   ..+..++++++|+++++...++ .|.+||. +++.+..+..+..  .+.+++++|+|++
T Consensus       187 i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l  264 (286)
T 1q7f_A          187 VKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSV  264 (286)
T ss_dssp             EEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEE
T ss_pred             EEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcE
Confidence            9999975 4555555433   5688999999999888888776 9999995 5667777765543  4789999999987


Q ss_pred             EEEEeCCCcEEEEEcCCCc
Q 005656          350 LLSSGMDGSLRIWDVILAR  368 (685)
Q Consensus       350 l~s~s~Dg~I~iwd~~~~~  368 (685)
                      +++ +.|++|++|++....
T Consensus       265 ~vs-~~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          265 VLA-SKDYRLYIYRYVQLA  282 (286)
T ss_dssp             EEE-ETTTEEEEEECSCCC
T ss_pred             EEE-CCCCeEEEEEccccc
Confidence            776 679999999986543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.76  E-value=5.3e-16  Score=154.58  Aligned_cols=241  Identities=13%  Similarity=0.185  Sum_probs=178.0

Q ss_pred             cCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcc
Q 005656           90 GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCN  169 (685)
Q Consensus        90 ~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (685)
                      ++-..+.+++++++++.+++...++.|.+||.. ++....+...                                    
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~------------------------------------   69 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGEC------------------------------------   69 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCB------------------------------------
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEeccc------------------------------------
Confidence            556678999999999988888889999999865 3332222100                                    


Q ss_pred             eEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEE-ccCCCEEEEEec-CCcEEEEECCCCccccccccccccc
Q 005656          170 VVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTI-SACGNFAVLGTA-GGWIERFNLQSGISRGSYLDMSERS  247 (685)
Q Consensus       170 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~g~~l~~g~~-dg~i~~~d~~~~~~~~~~~~~~~~~  247 (685)
                                                .....+...+..+++ .++++.+++... ++.|.+|| .++.....+..     
T Consensus        70 --------------------------~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~-----  117 (286)
T 1q7f_A           70 --------------------------GKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGA-----  117 (286)
T ss_dssp             --------------------------SSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECT-----
T ss_pred             --------------------------CCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecC-----
Confidence                                      000023346788999 467776666644 88999999 55655444421     


Q ss_pred             cCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec---CCceeEEEEeecCCEEEEEeCCCeEEEEEcCC
Q 005656          248 NYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV---GCSLVKIVYHRVNGLLATVADDLVIRLFDVVA  324 (685)
Q Consensus       248 ~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~  324 (685)
                        .+...+.+++++++++++++...++.|.+||.. ++....+..   ...+..++++++|+++++...++.|++||. +
T Consensus       118 --~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~  193 (286)
T 1q7f_A          118 --TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-E  193 (286)
T ss_dssp             --TTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-T
T ss_pred             --ccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcC-C
Confidence              344678999999999987777778999999964 555555542   246889999999998888788999999997 4


Q ss_pred             CeeEEEEecC--CCCeEEEEEcCCCCEEEEEeCCC-cEEEEEcCCCceeeEEeeccc---eEEEEEcCCCCeEEEEEeCC
Q 005656          325 LRMVRKFEGH--TDRITDFCFSEDGKWLLSSGMDG-SLRIWDVILARQIDAIHVDVS---ITALSLSPNMDVLATAHVDQ  398 (685)
Q Consensus       325 ~~~~~~~~~h--~~~I~~l~~spdg~~l~s~s~Dg-~I~iwd~~~~~~i~~~~~~~~---v~~v~~spdg~~Lat~~~d~  398 (685)
                      ++.+..+..+  ...+..++++++|+++++...++ .|++|+ .+++.+..+..+..   +.+++++|+|+++++ +.++
T Consensus       194 g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~  271 (286)
T 1q7f_A          194 GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDY  271 (286)
T ss_dssp             CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTT
T ss_pred             CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEEC-CCCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCC
Confidence            5666666543  36789999999999888888776 999999 46777777765432   789999999987666 5564


Q ss_pred             CeEEEEEc
Q 005656          399 NGVYLWVN  406 (685)
Q Consensus       399 ~~I~lW~~  406 (685)
                       .|++|+.
T Consensus       272 -~v~v~~~  278 (286)
T 1q7f_A          272 -RLYIYRY  278 (286)
T ss_dssp             -EEEEEEC
T ss_pred             -eEEEEEc
Confidence             9999974

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.75  E-value=4.4e-16  Score=158.57  Aligned_cols=271  Identities=13%  Similarity=0.079  Sum_probs=180.8

Q ss_pred             CCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceE
Q 005656           92 SAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVV  171 (685)
Q Consensus        92 ~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (685)
                      -+.|.+++++|+|+.+++...++.+.+++......   +...                ...+                  
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~---~~~~----------------~~~~------------------   65 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFV---YQQR----------------GLGP------------------   65 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSC---BSCG----------------GGCS------------------
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCccee---eccc----------------cccc------------------
Confidence            46789999999999888887776544432211110   0000                0000                  


Q ss_pred             EEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCc-ccccccccc-ccccC
Q 005656          172 TCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI-SRGSYLDMS-ERSNY  249 (685)
Q Consensus       172 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~-~~~~~~~~~-~~~~~  249 (685)
                         ...+.+.+|+..+.......   .......+..++++++|+.+++...++.|++||..... ....+.... .....
T Consensus        66 ---~~~~~i~~~d~~~g~~~~~~---~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~  139 (329)
T 3fvz_A           66 ---IEEDTILVIDPNNAEILQSS---GKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQ  139 (329)
T ss_dssp             ---CCSCCEEEECTTTCCEEEEE---CTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCST
T ss_pred             ---ccCCcEEEEECCCCeEEecc---CCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCc
Confidence               02344555555433221111   01334568899999999988888889999999986542 232221100 00001


Q ss_pred             CCCcCEEEEEEcC-CCCEEEEEE-CCCeEEEEECCCCceEEEeecC-----------CceeEEEEeec-CCEEEEEeCCC
Q 005656          250 AHNGEVVGVACDS-TNTLMISAG-YHGDIKVWDFKGRDLKSRWEVG-----------CSLVKIVYHRV-NGLLATVADDL  315 (685)
Q Consensus       250 ~h~~~v~~l~~~~-~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~-----------~~i~~~~~~~~-~~~l~~~~~dg  315 (685)
                      .+.....+++++| ++.++++.+ .++.|++|| .++..+..+...           .....++++|+ +.++++...++
T Consensus       140 ~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~  218 (329)
T 3fvz_A          140 NHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENG  218 (329)
T ss_dssp             TCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTT
T ss_pred             cccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCC
Confidence            4455789999999 788777776 689999999 556666665422           23789999998 66777777889


Q ss_pred             eEEEEEcCCCeeEEEEe--cCCCCeEEEEEcC------CCCEEEEEeCCCcEEEEEcCCCceeeEEee----ccceEEEE
Q 005656          316 VIRLFDVVALRMVRKFE--GHTDRITDFCFSE------DGKWLLSSGMDGSLRIWDVILARQIDAIHV----DVSITALS  383 (685)
Q Consensus       316 ~I~i~d~~~~~~~~~~~--~h~~~I~~l~~sp------dg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~----~~~v~~v~  383 (685)
                      .|++||..+++.+..+.  .+...+..++|+|      +|+..++.+.+..|++|+..+++.+..+..    -..+.+++
T Consensus       219 ~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia  298 (329)
T 3fvz_A          219 RIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIV  298 (329)
T ss_dssp             EEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEE
T ss_pred             EEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEE
Confidence            99999999899988884  4567789999999      333222333455899999999999988742    23389999


Q ss_pred             EcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          384 LSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       384 ~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                      ++|+|.++++...+ +.|++|+..
T Consensus       299 ~~~dG~lyvad~~~-~~I~~~~~~  321 (329)
T 3fvz_A          299 ASEDGTVYIGDAHT-NTVWKFTLT  321 (329)
T ss_dssp             ECTTSEEEEEESSS-CCEEEEEEE
T ss_pred             ECCCCCEEEEECCC-CEEEEEeCC
Confidence            99999655555555 499999854

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.75  E-value=2.2e-16  Score=162.07  Aligned_cols=258  Identities=7%  Similarity=0.021  Sum_probs=174.2

Q ss_pred             cCeeEEEEeCCCcEEEEec---------CCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCC---C
Q 005656           47 NAIISLHFFANEPVLMSAS---------ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD---R  114 (685)
Q Consensus        47 ~~V~~l~~sp~~~~l~s~s---------~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d---g  114 (685)
                      ..+..+++  ||+.++...         .++.|.+|+++.+.  .+.+       ..+..++|+|||++|+.++.+   +
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~--~~~l-------~~~~~~~~SpDg~~la~~~~~~~~~   83 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNA--RRFI-------ENATMPRISPDGKKIAFMRANEEKK   83 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCC--EEEE-------ESCEEEEECTTSSEEEEEEEETTTT
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCc--eEEc-------ccCCCeEECCCCCEEEEEEeccCCC
Confidence            34666777  787776542         25667888776542  1222       468899999999999987754   3


Q ss_pred             c--eEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCc
Q 005656          115 A--FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGE  192 (685)
Q Consensus       115 ~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~  192 (685)
                      .  |.+|++.+++.....                                                              
T Consensus        84 ~~~l~~~~~~~g~~~~l~--------------------------------------------------------------  101 (347)
T 2gop_A           84 VSEIWVADLETLSSKKIL--------------------------------------------------------------  101 (347)
T ss_dssp             EEEEEEEETTTTEEEEEE--------------------------------------------------------------
T ss_pred             cceEEEEECCCCceEEEE--------------------------------------------------------------
Confidence            3  666666554322211                                                              


Q ss_pred             eeecCCCCCCCCeEEEEEccCCCEEEEEecC---------------------------CcEEEEECCCCccccccccccc
Q 005656          193 HILRPCPENPTAVKACTISACGNFAVLGTAG---------------------------GWIERFNLQSGISRGSYLDMSE  245 (685)
Q Consensus       193 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d---------------------------g~i~~~d~~~~~~~~~~~~~~~  245 (685)
                             .... +..++|+|+|+.+++++.+                           ..|++||+.++.....+.    
T Consensus       102 -------~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~----  169 (347)
T 2gop_A          102 -------EAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFE----  169 (347)
T ss_dssp             -------EESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEE----
T ss_pred             -------cCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeec----
Confidence                   1122 7889999999988887642                           579999998887633332    


Q ss_pred             cccCCCCcCEEEEEEcCCCCEEEEEECCC-------eEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCC----
Q 005656          246 RSNYAHNGEVVGVACDSTNTLMISAGYHG-------DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD----  314 (685)
Q Consensus       246 ~~~~~h~~~v~~l~~~~~~~~l~s~s~dg-------~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----  314 (685)
                          . . .+..++|+|+| ++++++.++       ...+|.+.+++....... ..+..  ++|+|+.|+.++.+    
T Consensus       170 ----~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~--~spdg~~l~~~~~~~~~~  239 (347)
T 2gop_A          170 ----K-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYA--VDSDGERILLYGKPEKKY  239 (347)
T ss_dssp             ----E-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEE--EEECSSCEEEEECCSSSC
T ss_pred             ----C-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceEEeccC-cceee--ECCCCCEEEEEEccccCC
Confidence                2 2 67789999999 777776542       334444335554443333 34443  39999988877654    


Q ss_pred             ----CeEEEEEcCCCeeEEEEecCCCCeEE-EEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCC
Q 005656          315 ----LVIRLFDVVALRMVRKFEGHTDRITD-FCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMD  389 (685)
Q Consensus       315 ----g~I~i~d~~~~~~~~~~~~h~~~I~~-l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~  389 (685)
                          ..|++||  +++......+|...+.. +.|+ || ++++++.++.+++| +.+++....+.....|.+++|+|  .
T Consensus       240 ~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~--~  312 (347)
T 2gop_A          240 MSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE--I  312 (347)
T ss_dssp             CCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEESS--S
T ss_pred             ccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC--c
Confidence                4788888  66655444566778886 9999 88 88999999999999 88776655555555699999999  6


Q ss_pred             eEEEEEeCCCeEEEEEc
Q 005656          390 VLATAHVDQNGVYLWVN  406 (685)
Q Consensus       390 ~Lat~~~d~~~I~lW~~  406 (685)
                      ++++++.++....||..
T Consensus       313 ~~~~~~~~~~~~~l~~~  329 (347)
T 2gop_A          313 VVYLKETATRLRELFTW  329 (347)
T ss_dssp             EEEEEECSSSCCEEEEE
T ss_pred             EEEEEcCCCChHHheEe
Confidence            77777766633366653

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.75  E-value=2.7e-16  Score=159.91  Aligned_cols=279  Identities=9%  Similarity=0.059  Sum_probs=199.1

Q ss_pred             CCCcEEEEeCCCCeeeEEeec-----ccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeE
Q 005656           23 SSGVISIWNLEKRRLQSVIRE-----AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLC   97 (685)
Q Consensus        23 ~dg~I~vwd~~~~~~~~~~~~-----~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~   97 (685)
                      .++.|.+||.++++....+..     ........+.+. ++++.++...++.|.+||..+.    +.+..+. ....+..
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~----~~~~~i~-~~~~p~~   88 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTF----KEVGRIT-GFTSPRY   88 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTC----CEEEEEE-CCSSEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECccc----EEEEEcC-CCCCCcE
Confidence            378999999999987765521     122346778775 4556667777899999998876    5555553 3467899


Q ss_pred             EEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCC
Q 005656           98 IRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDT  177 (685)
Q Consensus        98 i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (685)
                      ++++++++..++...++.|.+||..+++....+..+..                                          
T Consensus        89 i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~------------------------------------------  126 (328)
T 3dsm_A           89 IHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDM------------------------------------------  126 (328)
T ss_dssp             EEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTC------------------------------------------
T ss_pred             EEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCc------------------------------------------
Confidence            99999985444444789999999988765544421100                                          


Q ss_pred             ceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe--cCCcEEEEECCCCccccccccccccccCCCCcCE
Q 005656          178 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT--AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEV  255 (685)
Q Consensus       178 ~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~--~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v  255 (685)
                                           .........+++  ++..++++.  .++.|.+||+.+++....+.         .....
T Consensus       127 ---------------------~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~---------~g~~p  174 (328)
T 3dsm_A          127 ---------------------DMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELT---------IGIQP  174 (328)
T ss_dssp             ---------------------CTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEE---------CSSCB
T ss_pred             ---------------------cccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEE---------cCCCc
Confidence                                 001112334555  455555554  48899999999988776553         12234


Q ss_pred             EEEEEcCCCCEEEEEECC----------CeEEEEECCCCceEEEeecC--CceeEEEEeecCCEEEEEeCCCeEEEEEcC
Q 005656          256 VGVACDSTNTLMISAGYH----------GDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADDLVIRLFDVV  323 (685)
Q Consensus       256 ~~l~~~~~~~~l~s~s~d----------g~i~iwd~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~  323 (685)
                      .+++++++|++++++..+          +.|.++|..+++....+..+  .....++++|+++.++++..  .|.+||..
T Consensus       175 ~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~  252 (328)
T 3dsm_A          175 TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVE  252 (328)
T ss_dssp             CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETT
T ss_pred             cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECC
Confidence            678899999877766554          78999999999888777653  46899999999998888765  89999999


Q ss_pred             CCeeEEE--EecCCCCeEEEEEcC-CCCEEEEE----eCCCcEEEEEcCCCceeeEEeeccceEEEEE
Q 005656          324 ALRMVRK--FEGHTDRITDFCFSE-DGKWLLSS----GMDGSLRIWDVILARQIDAIHVDVSITALSL  384 (685)
Q Consensus       324 ~~~~~~~--~~~h~~~I~~l~~sp-dg~~l~s~----s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~  384 (685)
                      +++....  +..+......++++| ++++.++.    ..++.|.+||.. ++.+..+........++|
T Consensus       253 t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P~~~~~  319 (328)
T 3dsm_A          253 ADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIPGAFCW  319 (328)
T ss_dssp             CSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESEEEEEE
T ss_pred             CCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCcceEEE
Confidence            8875321  122245689999999 55666665    578899999988 999999987766777776

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.73  E-value=6.2e-16  Score=158.73  Aligned_cols=283  Identities=12%  Similarity=0.086  Sum_probs=171.9

Q ss_pred             cEEEEEEccCCCCEEEEE---------eCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCC---Cc--
Q 005656            4 AVTALAFSSDGQPLLASG---------ASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD---NS--   69 (685)
Q Consensus         4 ~V~~l~fspdg~~~latg---------~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D---~~--   69 (685)
                      .+..++|  ||+ .+|..         ..++.|.+||+.+++....      ..+.+++|+|||+.|+.++.+   +.  
T Consensus        16 ~~~~~~~--dG~-~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l------~~~~~~~~SpDg~~la~~~~~~~~~~~~   86 (347)
T 2gop_A           16 YLSDPRT--KGE-LVAYVLTKANLKDNKYENTIVIENLKNNARRFI------ENATMPRISPDGKKIAFMRANEEKKVSE   86 (347)
T ss_dssp             EEEEEEE--ETT-EEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE------ESCEEEEECTTSSEEEEEEEETTTTEEE
T ss_pred             EcccceE--CCc-EEEEEEeecCcccCCccceEEEEeCCCCceEEc------ccCCCeEECCCCCEEEEEEeccCCCcce
Confidence            4677888  888 55432         1257899999998875432      468899999999999887654   44  


Q ss_pred             EEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccccccc
Q 005656           70 IKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEEL  149 (685)
Q Consensus        70 v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (685)
                      |.+|+++.+    +...... +.. +..+.|+|||+.|+.++.+..       .......+.         .+.      
T Consensus        87 l~~~~~~~g----~~~~l~~-~~~-~~~~~wspdg~~l~~~~~~~~-------~~~~~~~~~---------~~~------  138 (347)
T 2gop_A           87 IWVADLETL----SSKKILE-AKN-IRSLEWNEDSRKLLIVGFKRR-------EDEDFIFED---------DVP------  138 (347)
T ss_dssp             EEEEETTTT----EEEEEEE-ESE-EEEEEECTTSSEEEEEEECCC-------C------------------CC------
T ss_pred             EEEEECCCC----ceEEEEc-CCC-ccceeECCCCCEEEEEEccCC-------CcCCcEEEc---------ccc------
Confidence            455554433    2222222 233 899999999999998875420       000000000         000      


Q ss_pred             ccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCC-----
Q 005656          150 KLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG-----  224 (685)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg-----  224 (685)
                             +.      .++..  ........+++|++........+ .   . . .+..++|+|+| .++++..++     
T Consensus       139 -------~~------~~g~~--~~~~~~~~l~~~d~~~~~~~~~l-~---~-~-~~~~~~~spdg-~~~~~~~~~~~~~~  196 (347)
T 2gop_A          139 -------AW------FDDLG--FFDGEKTTFWIFDTESEEVIEEF-E---K-P-RFSSGIWHRDK-IVVNVPHREIIPQY  196 (347)
T ss_dssp             -------CC-----------------CEEEEEEEETTTTEEEEEE-E---E-E-TTCEEEEETTE-EEEEEECCCSSCCS
T ss_pred             -------ee------ecCcc--cccCccceEEEEECCCCeEEeee-c---C-C-CcccccCCCCe-EEEEEecccccccc
Confidence                   00      00000  00011234666666543321111 1   1 2 57788999999 777775542     


Q ss_pred             ----cEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC--------CeEEEEECCCCceEEEeec
Q 005656          225 ----WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH--------GDIKVWDFKGRDLKSRWEV  292 (685)
Q Consensus       225 ----~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~  292 (685)
                          .|+++|  ++... .+.        .+ ..+..+  +|+|+.|+.++.+        ..|.+||  +++.......
T Consensus       197 ~~~~~l~~~d--~~~~~-~l~--------~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~  260 (347)
T 2gop_A          197 FKFWDIYIWE--DGKEE-KMF--------EK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDE  260 (347)
T ss_dssp             SCCEEEEEEE--TTEEE-EEE--------EE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTT
T ss_pred             cccccEEEeC--CCceE-Eec--------cC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEecccc
Confidence                455555  44432 221        23 445544  8999988887754        3688888  5554443333


Q ss_pred             -CCceeE-EEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcE-EEEEcCCCc
Q 005656          293 -GCSLVK-IVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSL-RIWDVILAR  368 (685)
Q Consensus       293 -~~~i~~-~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I-~iwd~~~~~  368 (685)
                       ...+.. +.|+ ++ ++++++.++.+++| +.+++.. .+..+.+.|.+++|+|  .++++++.++.. .+|.+. ++
T Consensus       261 ~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~-~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~  332 (347)
T 2gop_A          261 VDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIK-PIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE  332 (347)
T ss_dssp             CCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEE-EEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS
T ss_pred             CCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceE-EEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc
Confidence             356775 8898 88 99999999999999 8866654 4445678899999999  677777777665 788776 54

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.73  E-value=2.9e-14  Score=142.60  Aligned_cols=278  Identities=12%  Similarity=0.078  Sum_probs=196.1

Q ss_pred             CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCC
Q 005656            3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP   82 (685)
Q Consensus         3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~   82 (685)
                      ..+.+++++++|. +.++...++.|.+||.. ++........+...+.++++.+++.+.++...++.|..|+.+ +  ..
T Consensus        15 ~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g--~~   89 (299)
T 2z2n_A           15 TGPYGITVSDKGK-VWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G--II   89 (299)
T ss_dssp             CCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S--CE
T ss_pred             CCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C--cE
Confidence            4689999999998 77666667899999988 554433222355789999999999988888778889888754 1  11


Q ss_pred             ceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccc
Q 005656           83 RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI  162 (685)
Q Consensus        83 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (685)
                      ..+ ........+.++++.++|+.+++...++.|..||. +++......                               
T Consensus        90 ~~~-~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~-------------------------------  136 (299)
T 2z2n_A           90 KEY-TLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYEL-------------------------------  136 (299)
T ss_dssp             EEE-ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEEC-------------------------------
T ss_pred             EEE-eCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecC-------------------------------
Confidence            111 12234567899999999987777767788888886 332211100                               


Q ss_pred             cccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccc
Q 005656          163 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD  242 (685)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~  242 (685)
                                                          ......+..+++.++|+..++...++.|..||. ++....... 
T Consensus       137 ------------------------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~-  178 (299)
T 2z2n_A          137 ------------------------------------PNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKI-  178 (299)
T ss_dssp             ------------------------------------SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEEC-
T ss_pred             ------------------------------------CCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeC-
Confidence                                                012345789999999988777777889999998 665443211 


Q ss_pred             ccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec---CCceeEEEEeecCCEEEEEeCCCeEEE
Q 005656          243 MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV---GCSLVKIVYHRVNGLLATVADDLVIRL  319 (685)
Q Consensus       243 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~I~i  319 (685)
                            ..+...+.++++++++.++++...++.|.+||. ++.... +..   ...+..++++++|+++++...++.|..
T Consensus       179 ------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~  250 (299)
T 2z2n_A          179 ------PTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIPTPNARPHAITAGAGIDLWFTEWGANKIGR  250 (299)
T ss_dssp             ------SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEE
T ss_pred             ------CCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECCCCCCCceeEEECCCCCEEEeccCCceEEE
Confidence                  134456889999999987776666889999999 665443 322   267889999999987766667889999


Q ss_pred             EEcCCCeeEEEE--ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 005656          320 FDVVALRMVRKF--EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR  368 (685)
Q Consensus       320 ~d~~~~~~~~~~--~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~  368 (685)
                      ||. +++. ..+  ..+...+.++++ ++|++.++.+ .+.|..++..+++
T Consensus       251 ~d~-~g~~-~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~  297 (299)
T 2z2n_A          251 LTS-NNII-EEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN  297 (299)
T ss_dssp             EET-TTEE-EEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred             ECC-CCce-EEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence            998 4543 333  345567999999 8888777665 5667778876553

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.72  E-value=3.3e-15  Score=151.51  Aligned_cols=295  Identities=14%  Similarity=0.100  Sum_probs=200.0

Q ss_pred             EEEccCCCCEEEEEeC-----CCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEec----------CCCcEEE
Q 005656            8 LAFSSDGQPLLASGAS-----SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS----------ADNSIKM   72 (685)
Q Consensus         8 l~fspdg~~~latg~~-----dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s----------~D~~v~i   72 (685)
                      ....|+++ .+++...     ++.|.+.|..+++.+..+..+. .+  .++++|||+++++++          .++.|.+
T Consensus        38 ~~~~pd~~-~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~-~P--~va~spDG~~lyVan~~~~r~~~G~~~~~Vsv  113 (386)
T 3sjl_D           38 EAPAPDAR-RVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF-LP--NPVVADDGSFIAHASTVFSRIARGERTDYVEV  113 (386)
T ss_dssp             CCCCCCTT-EEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS-SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred             eccCCCCC-EEEEEcCcccCCCCEEEEEECCCCeEEEEEECCC-CC--cEEECCCCCEEEEEcccccccccCCCCCEEEE
Confidence            34578998 5555543     6899999999999999998443 34  499999999887765          3678999


Q ss_pred             EEecCCCCCCceeEecccC-------CCCCeEEEEecCCCEEEEEeC--CCceEEEEeecCceeeEechhhHHHHHhhcc
Q 005656           73 WIFDTTDGDPRLLRFRSGH-------SAPPLCIRFYANGRHILSAGQ--DRAFRLFSVIQDQQSRELSQRHVAKRARKLK  143 (685)
Q Consensus        73 Wd~~~~~~~~~~~~~~~~h-------~~~v~~i~~~~~~~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  143 (685)
                      ||..+.    +.+..+.-.       ......+.|+|||++++++..  ++.|.++|+.+.+....+...          
T Consensus       114 iD~~t~----~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~----------  179 (386)
T 3sjl_D          114 FDPVTL----LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP----------  179 (386)
T ss_dssp             ECTTTC----CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC----------
T ss_pred             EECCCC----eEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC----------
Confidence            998776    444443211       235778999999999998864  689999999998877665310          


Q ss_pred             ccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecC
Q 005656          144 MKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG  223 (685)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d  223 (685)
                                                                                 +  ....+....+.+++.+.|
T Consensus       180 -----------------------------------------------------------g--~~~~~P~g~~~~~~~~~D  198 (386)
T 3sjl_D          180 -----------------------------------------------------------D--CYHIFPTAPDTFFMHCRD  198 (386)
T ss_dssp             -----------------------------------------------------------S--EEEEEEEETTEEEEEETT
T ss_pred             -----------------------------------------------------------C--cceeecCCCceeEEECCC
Confidence                                                                       0  011111123344455556


Q ss_pred             CcEEEEECCC-CccccccccccccccCCCCcCEE-EEEEc-CCCCEEEEEECCCeEEEEECCCCc--eEEEee-------
Q 005656          224 GWIERFNLQS-GISRGSYLDMSERSNYAHNGEVV-GVACD-STNTLMISAGYHGDIKVWDFKGRD--LKSRWE-------  291 (685)
Q Consensus       224 g~i~~~d~~~-~~~~~~~~~~~~~~~~~h~~~v~-~l~~~-~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~-------  291 (685)
                      |.+.++++.+ +........    ........+. ...|. ++|++++ .+.+|.|++.|+.+..  ....+.       
T Consensus       199 G~~~~v~~~~~g~v~~~~~~----~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~  273 (386)
T 3sjl_D          199 GSLAKVAFGTEGTPEITHTE----VFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAER  273 (386)
T ss_dssp             SCEEEEECCSSSCCEEEECC----CCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHH
T ss_pred             CCEEEEECCCCCeEEEeecc----eeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccc
Confidence            6666666654 332111000    0001111111 13554 5665444 5668999999997664  333332       


Q ss_pred             ----cCCceeEEEEeecCCEEEEEeC----------CCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCC-EEEEE-eC
Q 005656          292 ----VGCSLVKIVYHRVNGLLATVAD----------DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK-WLLSS-GM  355 (685)
Q Consensus       292 ----~~~~i~~~~~~~~~~~l~~~~~----------dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~-~l~s~-s~  355 (685)
                          .......++++++++.+++...          .+.|.++|+.+++.++++..- ..+..+++++|++ +|+++ ..
T Consensus       274 ~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~  352 (386)
T 3sjl_D          274 ADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTG  352 (386)
T ss_dssp             HTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETT
T ss_pred             cccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCC
Confidence                0134455788999998877653          257999999999999988732 3688999999997 66665 45


Q ss_pred             CCcEEEEEcCCCceeeEEeeccceEEEEEcCC
Q 005656          356 DGSLRIWDVILARQIDAIHVDVSITALSLSPN  387 (685)
Q Consensus       356 Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spd  387 (685)
                      ++.|.++|..+++.+..+......+.+.+++|
T Consensus       353 ~~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d  384 (386)
T 3sjl_D          353 DKTLYIHDAESGEELRSVNQLGHGPQVITTAD  384 (386)
T ss_dssp             TTEEEEEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred             CCeEEEEECCCCcEEEEecCCCCCceeEECCc
Confidence            89999999999999999998888888888887

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.71  E-value=2.4e-15  Score=170.05  Aligned_cols=243  Identities=14%  Similarity=0.110  Sum_probs=166.5

Q ss_pred             cEEEEEEccCCCCEEEEEeC-CC----cEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCc---------
Q 005656            4 AVTALAFSSDGQPLLASGAS-SG----VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNS---------   69 (685)
Q Consensus         4 ~V~~l~fspdg~~~latg~~-dg----~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~---------   69 (685)
                      .+.+++|||||+ +||.+.. +|    .|++||+.+++...... .+ ..+.+++|+|||+.|+.++.++.         
T Consensus       126 ~~~~~~~SPDg~-~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~-~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~  202 (710)
T 2xdw_A          126 ALRGYAFSEDGE-YFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTET  202 (710)
T ss_dssp             EEEEEEECTTSS-EEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCC
T ss_pred             EEEEEEECCCCC-EEEEEEcCCCCceEEEEEEECCCCCCCcccc-cC-cccceEEEEeCCCEEEEEEECCcccccccccc
Confidence            578999999999 6765543 33    89999999998876543 22 23778999999999998887765         


Q ss_pred             -------EEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeC-----CCceEEEEeec------Cc-eeeEe
Q 005656           70 -------IKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ-----DRAFRLFSVIQ------DQ-QSREL  130 (685)
Q Consensus        70 -------v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~-----dg~i~vwd~~~------~~-~~~~~  130 (685)
                             |++|++.++.....++.....|...+..+.|+|||++|+.++.     +..|++||+.+      +. ....+
T Consensus       203 ~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l  282 (710)
T 2xdw_A          203 STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKL  282 (710)
T ss_dssp             CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEE
T ss_pred             ccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEe
Confidence                   8999887653222333333445666789999999999988764     44566666543      11 00000


Q ss_pred             chhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEE
Q 005656          131 SQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTI  210 (685)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~  210 (685)
                                                                                                      
T Consensus       283 --------------------------------------------------------------------------------  282 (710)
T 2xdw_A          283 --------------------------------------------------------------------------------  282 (710)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC----CeEEEEECCCCce
Q 005656          211 SACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH----GDIKVWDFKGRDL  286 (685)
Q Consensus       211 s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d----g~i~iwd~~~~~~  286 (685)
                                                    .        .+...+.. .|+++|+.|+..+..    +.|.+||+.++..
T Consensus       283 ------------------------------~--------~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~  323 (710)
T 2xdw_A          283 ------------------------------I--------DNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE  323 (710)
T ss_dssp             ------------------------------E--------CSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCG
T ss_pred             ------------------------------e--------CCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCc
Confidence                                          0        22222222 355666666555432    3588888877642


Q ss_pred             ---EEEeecC--CceeEEEEeecCCEEEEEeCCC--eEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE-e---C
Q 005656          287 ---KSRWEVG--CSLVKIVYHRVNGLLATVADDL--VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS-G---M  355 (685)
Q Consensus       287 ---~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg--~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~-s---~  355 (685)
                         ...+.+.  ..+..+.+++++.++++...++  .|++||+.+++.++.+..+.+.|..++++|+++.++.. +   .
T Consensus       324 ~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~  403 (710)
T 2xdw_A          324 SKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLS  403 (710)
T ss_dssp             GGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSC
T ss_pred             ccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCC
Confidence               2233332  2577888887777888888888  46667877888888888888889999999999866633 2   3


Q ss_pred             CCcEEEEEcCCCc
Q 005656          356 DGSLRIWDVILAR  368 (685)
Q Consensus       356 Dg~I~iwd~~~~~  368 (685)
                      .++|+.||+.+++
T Consensus       404 P~~i~~~d~~tg~  416 (710)
T 2xdw_A          404 PGIIYHCDLTKEE  416 (710)
T ss_dssp             CCEEEEEETTSSS
T ss_pred             CCEEEEEECCCCc
Confidence            5789999999887

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.70  E-value=4.9e-15  Score=167.49  Aligned_cols=278  Identities=7%  Similarity=-0.026  Sum_probs=189.5

Q ss_pred             CCCcEEEEecCC-C--cEEEEEecCCCCCCceeEe----cccCCCCCeEEEEecCCCEEEEEeCCC-----ceEEEEeec
Q 005656           56 ANEPVLMSASAD-N--SIKMWIFDTTDGDPRLLRF----RSGHSAPPLCIRFYANGRHILSAGQDR-----AFRLFSVIQ  123 (685)
Q Consensus        56 p~~~~l~s~s~D-~--~v~iWd~~~~~~~~~~~~~----~~~h~~~v~~i~~~~~~~~l~s~s~dg-----~i~vwd~~~  123 (685)
                      |+|++++....+ +  .-.+|..+...+..+.+..    -.+|...+..++|||||++|+.++.++     .|++||+.+
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t  160 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG  160 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence            788877655432 2  2367777654443333321    123445688999999999998776543     899999987


Q ss_pred             CceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCC
Q 005656          124 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT  203 (685)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  203 (685)
                      ++......                                                                     ...
T Consensus       161 g~~~~~~~---------------------------------------------------------------------~~~  171 (710)
T 2xdw_A          161 AKELPDVL---------------------------------------------------------------------ERV  171 (710)
T ss_dssp             TEEEEEEE---------------------------------------------------------------------EEE
T ss_pred             CCCCcccc---------------------------------------------------------------------cCc
Confidence            76533210                                                                     011


Q ss_pred             CeEEEEEccCCCEEEEEecCCc----------------EEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEE
Q 005656          204 AVKACTISACGNFAVLGTAGGW----------------IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLM  267 (685)
Q Consensus       204 ~v~~~~~s~~g~~l~~g~~dg~----------------i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l  267 (685)
                      .+..++|+|||+.|+.++.++.                |++|++.++........    ....|...+.++.|+|+|++|
T Consensus       172 ~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~----~~~~~~~~~~~~~~SpDg~~l  247 (710)
T 2xdw_A          172 KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCA----EFPDEPKWMGGAELSDDGRYV  247 (710)
T ss_dssp             CSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEE----CCTTCTTCEEEEEECTTSCEE
T ss_pred             ccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEe----ccCCCCeEEEEEEEcCCCCEE
Confidence            2456899999999999888765                99999988764322110    111356678899999999998


Q ss_pred             EEEEC-----CCeEEEEECCC------Cc-eEEEeecC-CceeEEEEeecCCEEEEEeCC----CeEEEEEcCCCe--eE
Q 005656          268 ISAGY-----HGDIKVWDFKG------RD-LKSRWEVG-CSLVKIVYHRVNGLLATVADD----LVIRLFDVVALR--MV  328 (685)
Q Consensus       268 ~s~s~-----dg~i~iwd~~~------~~-~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d----g~I~i~d~~~~~--~~  328 (685)
                      +.++.     +..|++||+.+      +. ....+..+ ..+. ..|+|+|+.|+..+..    +.|.+||+.++.  ..
T Consensus       248 ~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~  326 (710)
T 2xdw_A          248 LLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEY-DYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKW  326 (710)
T ss_dssp             EEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCE-EEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGC
T ss_pred             EEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEE-EEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccc
Confidence            87764     56899999986      42 23333333 3333 3588999977776653    369999998874  23


Q ss_pred             EEEecCCC--CeEEEEEcCCCCEEEEEeCCCc--EEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeC---CCe
Q 005656          329 RKFEGHTD--RITDFCFSEDGKWLLSSGMDGS--LRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVD---QNG  400 (685)
Q Consensus       329 ~~~~~h~~--~I~~l~~spdg~~l~s~s~Dg~--I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d---~~~  400 (685)
                      +.+..|..  .+..++|++++.++++...|+.  |++|++.+|+.+..+..+.. +..++++|+++.++.+..+   -..
T Consensus       327 ~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~  406 (710)
T 2xdw_A          327 KVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGI  406 (710)
T ss_dssp             EEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCE
T ss_pred             eeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCE
Confidence            45555544  6888999988888888888885  66677767887777765543 8899999999877755433   137


Q ss_pred             EEEEEcC
Q 005656          401 VYLWVNR  407 (685)
Q Consensus       401 I~lW~~~  407 (685)
                      |++|+..
T Consensus       407 i~~~d~~  413 (710)
T 2xdw_A          407 IYHCDLT  413 (710)
T ss_dssp             EEEEETT
T ss_pred             EEEEECC
Confidence            9999864

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.70  E-value=2.5e-15  Score=169.39  Aligned_cols=278  Identities=9%  Similarity=-0.033  Sum_probs=182.4

Q ss_pred             EccCCCCEEEEEeC-C----CcEEEEeCCCCeeeEEee-----cccccCeeEEEEeCCCcEEE-----EecCCCcEEEEE
Q 005656           10 FSSDGQPLLASGAS-S----GVISIWNLEKRRLQSVIR-----EAHDNAIISLHFFANEPVLM-----SASADNSIKMWI   74 (685)
Q Consensus        10 fspdg~~~latg~~-d----g~I~vwd~~~~~~~~~~~-----~~h~~~V~~l~~sp~~~~l~-----s~s~D~~v~iWd   74 (685)
                      .+|+|+ .++.... .    +.|.+.+...+.....+.     .+|...+.+++|||||++||     .|+.+.+|++||
T Consensus        75 p~~dG~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~d  153 (695)
T 2bkl_A           75 PSRRNG-RFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVID  153 (695)
T ss_dssp             CEEETT-EEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEE
T ss_pred             CEEECC-EEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEE
Confidence            348898 5554433 3    234555555554333332     24556799999999999988     444567899999


Q ss_pred             ecCCCCCCceeEecccCCCC--CeEEEEecCCCEEEEEeCCCc-------------eEEEEeecCceeeEechhhHHHHH
Q 005656           75 FDTTDGDPRLLRFRSGHSAP--PLCIRFYANGRHILSAGQDRA-------------FRLFSVIQDQQSRELSQRHVAKRA  139 (685)
Q Consensus        75 ~~~~~~~~~~~~~~~~h~~~--v~~i~~~~~~~~l~s~s~dg~-------------i~vwd~~~~~~~~~~~~~~~~~~~  139 (685)
                      +.++.    .+.  ..+...  ...++|+|||+.|+.++.|..             |++|++.++...            
T Consensus       154 l~tg~----~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~------------  215 (695)
T 2bkl_A          154 VDSGE----WSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSK------------  215 (695)
T ss_dssp             TTTCC----BCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGG------------
T ss_pred             CCCCC----CcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchh------------
Confidence            98763    220  111112  267899999999999988765             677766544321            


Q ss_pred             hhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEE
Q 005656          140 RKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL  219 (685)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  219 (685)
                                                                          ...+.....+...+..+.+||+|+++++
T Consensus       216 ----------------------------------------------------~~lv~~~~~~~~~~~~~~~SpDG~~l~~  243 (695)
T 2bkl_A          216 ----------------------------------------------------DTVVHERTGDPTTFLQSDLSRDGKYLFV  243 (695)
T ss_dssp             ----------------------------------------------------CEEEECCCCCTTCEEEEEECTTSCCEEE
T ss_pred             ----------------------------------------------------ceEEEecCCCCEEEEEEEECCCCCEEEE
Confidence                                                                1111111134457889999999999988


Q ss_pred             EecCC----cEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE---CCCeEEEEECCCCce---EEE
Q 005656          220 GTAGG----WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG---YHGDIKVWDFKGRDL---KSR  289 (685)
Q Consensus       220 g~~dg----~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s---~dg~i~iwd~~~~~~---~~~  289 (685)
                      ++.++    .|++++..++......         .+...+....+ ++|.+++++.   .++.|.+||+.++..   ...
T Consensus       244 ~~~~~~~~~~l~~~~~~~~~~~~l~---------~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l  313 (695)
T 2bkl_A          244 YILRGWSENDVYWKRPGEKDFRLLV---------KGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEI  313 (695)
T ss_dssp             EEEETTTEEEEEEECTTCSSCEEEE---------ECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEE
T ss_pred             EEeCCCCceEEEEEcCCCCceEEee---------cCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEE
Confidence            87766    6777776555433222         34445556666 5555444443   257899999987653   333


Q ss_pred             eec--CCceeEEEEeecCCEEEEEeCCCeEEEEEcC-CCeeEEEEecC-CCCeEEEEEcCCCCEEEEEe----CCCcEEE
Q 005656          290 WEV--GCSLVKIVYHRVNGLLATVADDLVIRLFDVV-ALRMVRKFEGH-TDRITDFCFSEDGKWLLSSG----MDGSLRI  361 (685)
Q Consensus       290 ~~~--~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~-~~~~~~~~~~h-~~~I~~l~~spdg~~l~s~s----~Dg~I~i  361 (685)
                      +..  ...+..++++ ++.++++...|+..++|.+. +++..+.+..+ .+.|..++++|+++.++...    ..++|++
T Consensus       314 ~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~  392 (695)
T 2bkl_A          314 VPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYK  392 (695)
T ss_dssp             ECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEE
T ss_pred             ecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEE
Confidence            333  3457778887 67788888999988888665 46666666655 66788889999998776332    3478999


Q ss_pred             EEcCCCce
Q 005656          362 WDVILARQ  369 (685)
Q Consensus       362 wd~~~~~~  369 (685)
                      ||+.+++.
T Consensus       393 ~d~~~g~~  400 (695)
T 2bkl_A          393 TSVSTGKS  400 (695)
T ss_dssp             EETTTCCE
T ss_pred             EECCCCcE
Confidence            99998874

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.70  E-value=3.1e-14  Score=154.15  Aligned_cols=294  Identities=12%  Similarity=0.061  Sum_probs=205.7

Q ss_pred             cEEEEEEccCCCCEEEEEeCCCcEEEEeCC--CCeeeEEeecccccCeeEEEEe----CCCcEEEEecC-CCcEEEEEec
Q 005656            4 AVTALAFSSDGQPLLASGASSGVISIWNLE--KRRLQSVIREAHDNAIISLHFF----ANEPVLMSASA-DNSIKMWIFD   76 (685)
Q Consensus         4 ~V~~l~fspdg~~~latg~~dg~I~vwd~~--~~~~~~~~~~~h~~~V~~l~~s----p~~~~l~s~s~-D~~v~iWd~~   76 (685)
                      .+..+.|||||+ ++++++.+|.|.+||+.  +++.+..+..  ......++|+    |||+++++++. +++|.++|..
T Consensus       198 ~p~~v~~SpDGr-~lyv~~~dg~V~viD~~~~t~~~v~~i~~--G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~  274 (567)
T 1qks_A          198 AVHISRLSASGR-YLFVIGRDGKVNMIDLWMKEPTTVAEIKI--GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE  274 (567)
T ss_dssp             CEEEEEECTTSC-EEEEEETTSEEEEEETTSSSCCEEEEEEC--CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT
T ss_pred             CccceEECCCCC-EEEEEcCCCeEEEEECCCCCCcEeEEEec--CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECC
Confidence            467899999999 78888899999999996  7888888873  2346899999    69998887765 5899999866


Q ss_pred             CCCCCCceeEeccc----------CCC-CCeEEEEecCCCE-EEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccc
Q 005656           77 TTDGDPRLLRFRSG----------HSA-PPLCIRFYANGRH-ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKM  144 (685)
Q Consensus        77 ~~~~~~~~~~~~~~----------h~~-~v~~i~~~~~~~~-l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  144 (685)
                      +.    +.+.....          |.. .+..+..++++.. +++...+|.|.++|...........             
T Consensus       275 t~----~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~-------------  337 (567)
T 1qks_A          275 TL----EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTE-------------  337 (567)
T ss_dssp             TC----CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEE-------------
T ss_pred             CC----cEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeee-------------
Confidence            64    44433221          222 5677888887554 4455566888888875443211100             


Q ss_pred             cccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe-cC
Q 005656          145 KEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-AG  223 (685)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~d  223 (685)
                                                              +              ........+.|+|+|++++++. .+
T Consensus       338 ----------------------------------------i--------------~~~~~~~d~~~~pdgr~~~va~~~s  363 (567)
T 1qks_A          338 ----------------------------------------I--------------SAERFLHDGGLDGSHRYFITAANAR  363 (567)
T ss_dssp             ----------------------------------------E--------------ECCSSEEEEEECTTSCEEEEEEGGG
T ss_pred             ----------------------------------------e--------------eccccccCceECCCCCEEEEEeCCC
Confidence                                                    0              1123466789999999987766 57


Q ss_pred             CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEE-EEEE-CCCeEEEEECCC-------CceEEEeecC-
Q 005656          224 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLM-ISAG-YHGDIKVWDFKG-------RDLKSRWEVG-  293 (685)
Q Consensus       224 g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~s~s-~dg~i~iwd~~~-------~~~~~~~~~~-  293 (685)
                      +.|.++|+.+++....+...   ....|.+....+ ++|++..+ +++. .+++|.++|..+       .+.+.++... 
T Consensus       364 n~V~ViD~~t~kl~~~i~vg---g~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g  439 (567)
T 1qks_A          364 NKLVVIDTKEGKLVAIEDTG---GQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALG  439 (567)
T ss_dssp             TEEEEEETTTTEEEEEEECS---SSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC
T ss_pred             CeEEEEECCCCcEEEEEecc---CcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCC
Confidence            89999999999876554210   112454432222 57875544 4443 468999999987       5677777754 


Q ss_pred             CceeEEEEeecCCEEEEEeC-------CCeEEEEEcCCC-----e-eEEEEe--------cCCCCeEEEEEcCCCCEEEE
Q 005656          294 CSLVKIVYHRVNGLLATVAD-------DLVIRLFDVVAL-----R-MVRKFE--------GHTDRITDFCFSEDGKWLLS  352 (685)
Q Consensus       294 ~~i~~~~~~~~~~~l~~~~~-------dg~I~i~d~~~~-----~-~~~~~~--------~h~~~I~~l~~spdg~~l~s  352 (685)
                      ..-..+..+|+++++++...       .++|.++|+.+.     . .+..+.        .....+..+.|+|+|+++..
T Consensus       440 ~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  519 (567)
T 1qks_A          440 GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWF  519 (567)
T ss_dssp             SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEE
T ss_pred             CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEE
Confidence            33355788999999988763       359999999877     2 123332        12356899999999998876


Q ss_pred             Ee-----CCCcEEEEEcCCCceeeEEee
Q 005656          353 SG-----MDGSLRIWDVILARQIDAIHV  375 (685)
Q Consensus       353 ~s-----~Dg~I~iwd~~~~~~i~~~~~  375 (685)
                      +.     .++.|.|+|..+++++..+..
T Consensus       520 s~~~~~~~~~~i~v~D~~t~~~~~~i~~  547 (567)
T 1qks_A          520 SVWNGKDQESALVVVDDKTLELKHVIKD  547 (567)
T ss_dssp             EEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred             EeecCCCCCCcEEEEECCCceEEEEeCC
Confidence            63     378999999999999888874

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.70  E-value=6.3e-15  Score=147.58  Aligned_cols=248  Identities=10%  Similarity=0.044  Sum_probs=176.8

Q ss_pred             eeEEeecccccCeeEEEEeCCCc-EEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCc
Q 005656           37 LQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA  115 (685)
Q Consensus        37 ~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~  115 (685)
                      .+..+. .+.....+++|+|+++ +++++..++.|..|+.+.+      ...+..+...+.+++++++|+.+++...++.
T Consensus        19 ~~~~l~-~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~   91 (296)
T 3e5z_A           19 EARRLA-DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ------LSPEMHPSHHQNGHCLNKQGHLIACSHGLRR   91 (296)
T ss_dssp             CCEEEE-CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC------EEEEESSCSSEEEEEECTTCCEEEEETTTTE
T ss_pred             cEEEEe-cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC------eEEEECCCCCcceeeECCCCcEEEEecCCCe
Confidence            334444 4566788999999998 7888888999999987653      2333456778899999999998777766789


Q ss_pred             eEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceee
Q 005656          116 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL  195 (685)
Q Consensus       116 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  195 (685)
                      |.+||..+++........                                                              
T Consensus        92 i~~~d~~~g~~~~~~~~~--------------------------------------------------------------  109 (296)
T 3e5z_A           92 LERQREPGGEWESIADSF--------------------------------------------------------------  109 (296)
T ss_dssp             EEEECSTTCCEEEEECEE--------------------------------------------------------------
T ss_pred             EEEEcCCCCcEEEEeecc--------------------------------------------------------------
Confidence            999998666532221100                                                              


Q ss_pred             cCCCCCCCCeEEEEEccCCCEEEE----Ee-------------cCCcEEEEECCCCccccccccccccccCCCCcCEEEE
Q 005656          196 RPCPENPTAVKACTISACGNFAVL----GT-------------AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGV  258 (685)
Q Consensus       196 ~~~~~~~~~v~~~~~s~~g~~l~~----g~-------------~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l  258 (685)
                        .......+..++++|+|+++++    |+             ..+.|+.++.. +......         .+.....++
T Consensus       110 --~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~---------~~~~~~~gi  177 (296)
T 3e5z_A          110 --EGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPI---------RDRVKPNGL  177 (296)
T ss_dssp             --TTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEE---------CCCSSEEEE
T ss_pred             --CCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEee---------cCCCCCccE
Confidence              0011234567899999998877    33             13567777765 4332211         455677899


Q ss_pred             EEcCCCCEEEEEECCCeEEEEECC-CCce---EEEee-cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEec
Q 005656          259 ACDSTNTLMISAGYHGDIKVWDFK-GRDL---KSRWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG  333 (685)
Q Consensus       259 ~~~~~~~~l~s~s~dg~i~iwd~~-~~~~---~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~  333 (685)
                      +|+|+++.+++.+.++.|.+|++. ++.+   ...+. ....+..++++++|+++++.  ++.|.+||.. ++.+..+..
T Consensus       178 ~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~  254 (296)
T 3e5z_A          178 AFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLT  254 (296)
T ss_dssp             EECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEEC
T ss_pred             EECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEEC
Confidence            999999988777778999999997 5554   22331 22456789999999866655  7899999986 778888888


Q ss_pred             CCCCeEEEEE-cCCCCEEEEEeCCCcEEEEEcCCCcee
Q 005656          334 HTDRITDFCF-SEDGKWLLSSGMDGSLRIWDVILARQI  370 (685)
Q Consensus       334 h~~~I~~l~~-spdg~~l~s~s~Dg~I~iwd~~~~~~i  370 (685)
                      +.. +++++| +|+++.|++++.++ +.-++..+.++.
T Consensus       255 ~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~~  290 (296)
T 3e5z_A          255 PQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGLE  290 (296)
T ss_dssp             SSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBCC
T ss_pred             CCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccccccc
Confidence            877 999999 68999999888764 555666665543

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.69  E-value=2.1e-13  Score=140.37  Aligned_cols=280  Identities=13%  Similarity=0.023  Sum_probs=187.3

Q ss_pred             EEccCCCCEEEEEeC--CC---cEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEec----------CCCcEEEE
Q 005656            9 AFSSDGQPLLASGAS--SG---VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS----------ADNSIKMW   73 (685)
Q Consensus         9 ~fspdg~~~latg~~--dg---~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s----------~D~~v~iW   73 (685)
                      ...|+++ .+++...  .+   .|.+||..+++.+..+..+ ..+  .++++|||++++.+.          .++.|.+|
T Consensus        27 ~~~~~~~-~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g-~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~vi  102 (373)
T 2mad_H           27 APGADGR-RSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG-FLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVF  102 (373)
T ss_pred             cCCCCCC-EEEEeCCcccCCccEEEEEECCCCeEEEEecCC-CCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEE
Confidence            3457887 5555542  33   7899999999998888733 333  999999999888875          36789999


Q ss_pred             EecCCCCCCceeEeccc-------CCCCCeEEEEecCCCEEEEEeC--CCceEEEEeecCceeeE-echhhHHHHHhhcc
Q 005656           74 IFDTTDGDPRLLRFRSG-------HSAPPLCIRFYANGRHILSAGQ--DRAFRLFSVIQDQQSRE-LSQRHVAKRARKLK  143 (685)
Q Consensus        74 d~~~~~~~~~~~~~~~~-------h~~~v~~i~~~~~~~~l~s~s~--dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~  143 (685)
                      |..+.    +.+....-       +......+.|+|||++|++++.  ++.|.++| .+++.... +..           
T Consensus       103 D~~t~----~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-----------  166 (373)
T 2mad_H          103 DPVTF----LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-----------  166 (373)
T ss_pred             ECCCC----cEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-----------
Confidence            98765    33332211       1234568999999999998874  47899999 88765544 321           


Q ss_pred             ccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCC-CEEEEEec
Q 005656          144 MKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTA  222 (685)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~  222 (685)
                                                                                ..   ++.+.|.+ +.+++.+.
T Consensus       167 ----------------------------------------------------------~~---~~~~~~~~~~~~~~~~~  185 (373)
T 2mad_H          167 ----------------------------------------------------------PT---CYHIHPGAPSTFYLLCA  185 (373)
T ss_pred             ----------------------------------------------------------Cc---eEEEEeCCCceEEEEcC
Confidence                                                                      11   13334444 34455667


Q ss_pred             CCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc--eEEEeec--------
Q 005656          223 GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD--LKSRWEV--------  292 (685)
Q Consensus       223 dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~--------  292 (685)
                      +|.+.+++. ++..........  ...+...-.....+.+++..++..+..+.+.+.|+.+..  ....+..        
T Consensus       186 dg~~~~vd~-~g~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~  262 (373)
T 2mad_H          186 QGGLAKTDH-AGGAAGAGLVGA--MLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKAD  262 (373)
T ss_pred             CCCEEEEEC-CCcEEEEEeccc--cccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCccccc
Confidence            888888888 665542211000  000111112234556666555555577899999987553  2222221        


Q ss_pred             ---CCceeEEEEeecCCEEEEEeC----------CCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCC-EEEEEe-CCC
Q 005656          293 ---GCSLVKIVYHRVNGLLATVAD----------DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK-WLLSSG-MDG  357 (685)
Q Consensus       293 ---~~~i~~~~~~~~~~~l~~~~~----------dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~-~l~s~s-~Dg  357 (685)
                         +.....+.++|+++.++++..          ++.|.++|..+++.+.++.. ......++|+|||+ .++++. .++
T Consensus       263 ~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~  341 (373)
T 2mad_H          263 TWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTE  341 (373)
T ss_pred             ceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCC
Confidence               123445788999998877653          35899999999999999863 33588999999999 777776 589


Q ss_pred             cEEEEEcCCCceeeEE
Q 005656          358 SLRIWDVILARQIDAI  373 (685)
Q Consensus       358 ~I~iwd~~~~~~i~~~  373 (685)
                      .|.+||+.+++.+..+
T Consensus       342 ~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          342 VLHIYDAGAGDQDQST  357 (373)
T ss_pred             eEEEEECCCCCEEeee
Confidence            9999999999998873

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.69  E-value=1.2e-14  Score=147.70  Aligned_cols=260  Identities=11%  Similarity=0.046  Sum_probs=184.3

Q ss_pred             CCCcEEEEEecCCCCCCceeEec----c--cCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHH
Q 005656           66 ADNSIKMWIFDTTDGDPRLLRFR----S--GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRA  139 (685)
Q Consensus        66 ~D~~v~iWd~~~~~~~~~~~~~~----~--~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~  139 (685)
                      .+++|.+||..++    +.....    .  .....+..+.+. +++.+++...++.|.+||..+++....+.        
T Consensus        15 ~~~~l~~~d~~t~----~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~--------   81 (328)
T 3dsm_A           15 SNATLSYYDPATC----EVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT--------   81 (328)
T ss_dssp             CCBEEEEEETTTT----EEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE--------
T ss_pred             CCceEEEEECCCC----EEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC--------
Confidence            3889999998876    332221    1  122345777774 45555566668999999998887655542        


Q ss_pred             hhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEE
Q 005656          140 RKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL  219 (685)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  219 (685)
                                                                                   .......+++++++ .+++
T Consensus        82 -------------------------------------------------------------~~~~p~~i~~~~~g-~lyv   99 (328)
T 3dsm_A           82 -------------------------------------------------------------GFTSPRYIHFLSDE-KAYV   99 (328)
T ss_dssp             -------------------------------------------------------------CCSSEEEEEEEETT-EEEE
T ss_pred             -------------------------------------------------------------CCCCCcEEEEeCCC-eEEE
Confidence                                                                         12457788998988 5555


Q ss_pred             Ee-cCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE--CCCeEEEEECCCCceEEEeecCCce
Q 005656          220 GT-AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG--YHGDIKVWDFKGRDLKSRWEVGCSL  296 (685)
Q Consensus       220 g~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~i  296 (685)
                      +. .++.|.+||..+++....+....   ..+......++++  ++..++.+.  .++.|.+||..+++....+......
T Consensus       100 ~~~~~~~v~~iD~~t~~~~~~i~~g~---~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p  174 (328)
T 3dsm_A          100 TQIWDYRIFIINPKTYEITGYIECPD---MDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQP  174 (328)
T ss_dssp             EEBSCSEEEEEETTTTEEEEEEECTT---CCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCB
T ss_pred             EECCCCeEEEEECCCCeEEEEEEcCC---ccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCc
Confidence            55 78999999999988765543100   0011124456666  344555554  4889999999999998888877777


Q ss_pred             eEEEEeecCCEEEEEeCC----------CeEEEEEcCCCeeEEEEecC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005656          297 VKIVYHRVNGLLATVADD----------LVIRLFDVVALRMVRKFEGH-TDRITDFCFSEDGKWLLSSGMDGSLRIWDVI  365 (685)
Q Consensus       297 ~~~~~~~~~~~l~~~~~d----------g~I~i~d~~~~~~~~~~~~h-~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~  365 (685)
                      ..+.++|+|++++++..+          +.|.++|..+++....+... ...+..++|+||+++|+++..  .|.+||..
T Consensus       175 ~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~  252 (328)
T 3dsm_A          175 TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVE  252 (328)
T ss_dssp             CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETT
T ss_pred             cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECC
Confidence            889999999977776654          79999999999988777633 246899999999999988765  89999999


Q ss_pred             CCceeeE--Eee-ccceEEEEEcCCCCeEEEEE----eCCCeEEEEEcC
Q 005656          366 LARQIDA--IHV-DVSITALSLSPNMDVLATAH----VDQNGVYLWVNR  407 (685)
Q Consensus       366 ~~~~i~~--~~~-~~~v~~v~~spdg~~Lat~~----~d~~~I~lW~~~  407 (685)
                      +++....  +.. ...+..++++|++..|.++.    ...+.|++|+..
T Consensus       253 t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          253 ADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             CSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred             CCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence            8876421  222 24489999999666666665    334589999754

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.69  E-value=1.2e-14  Score=145.64  Aligned_cols=237  Identities=8%  Similarity=-0.029  Sum_probs=171.7

Q ss_pred             ccCCCCCeEEEEecCCC-EEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCC
Q 005656           89 SGHSAPPLCIRFYANGR-HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDW  167 (685)
Q Consensus        89 ~~h~~~v~~i~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (685)
                      ..+...+.+++|+|+|+ .++++..++.|..|+..++  ...+.                                    
T Consensus        24 ~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~------------------------------------   65 (296)
T 3e5z_A           24 ADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEM------------------------------------   65 (296)
T ss_dssp             ECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEE------------------------------------
T ss_pred             ecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEE------------------------------------
Confidence            34556678999999998 6777788899999997655  22221                                    


Q ss_pred             cceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccc
Q 005656          168 CNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERS  247 (685)
Q Consensus       168 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~  247 (685)
                                                      .....+.+++++++|+.+++...++.|.+||..++........    .
T Consensus        66 --------------------------------~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~----~  109 (296)
T 3e5z_A           66 --------------------------------HPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADS----F  109 (296)
T ss_dssp             --------------------------------SSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECE----E
T ss_pred             --------------------------------CCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeec----c
Confidence                                            2245678999999999887777778999999988875433210    0


Q ss_pred             cCCCCcCEEEEEEcCCCCEEEEEEC-----------------CCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEE
Q 005656          248 NYAHNGEVVGVACDSTNTLMISAGY-----------------HGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLAT  310 (685)
Q Consensus       248 ~~~h~~~v~~l~~~~~~~~l~s~s~-----------------dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  310 (685)
                      .......+.+++++|+|+++++.+.                 .+.|..++.. ++.............++|+|+++.+++
T Consensus       110 ~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv~  188 (296)
T 3e5z_A          110 EGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLVS  188 (296)
T ss_dssp             TTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEEE
T ss_pred             CCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEEE
Confidence            0011235678999999998887321                 3456666655 554444444466789999999998877


Q ss_pred             EeCCCeEEEEEcC-CCee---EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccceEEEEE-c
Q 005656          311 VADDLVIRLFDVV-ALRM---VRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSL-S  385 (685)
Q Consensus       311 ~~~dg~I~i~d~~-~~~~---~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~-s  385 (685)
                      .+.++.|++||+. +++.   ...+..+.+.+.+++++++|+++++.  ++.|.+|+.. ++.+..+..+..+++++| +
T Consensus       189 ~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~~~~~~f~~  265 (296)
T 3e5z_A          189 DTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQTTSNLCFGG  265 (296)
T ss_dssp             ETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSCCCEEEEES
T ss_pred             eCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCCceeEEEEC
Confidence            7778999999997 5554   33444455667889999999976666  7889999976 888888876655999999 6


Q ss_pred             CCCCeEEEEEeCCCeEEEEE
Q 005656          386 PNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       386 pdg~~Lat~~~d~~~I~lW~  405 (685)
                      |+++.|++++.+  .++-++
T Consensus       266 ~d~~~L~v~t~~--~l~~~~  283 (296)
T 3e5z_A          266 PEGRTLYMTVST--EFWSIE  283 (296)
T ss_dssp             TTSCEEEEEETT--EEEEEE
T ss_pred             CCCCEEEEEcCC--eEEEEE
Confidence            899999998865  455444

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.68  E-value=2.8e-13  Score=135.46  Aligned_cols=275  Identities=11%  Similarity=0.047  Sum_probs=194.8

Q ss_pred             ccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeE-ecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEee
Q 005656           44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLR-FRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI  122 (685)
Q Consensus        44 ~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~-~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~  122 (685)
                      .+...+.++++.++|++.++...++.|.+|+.+ +    .... ....+...+.++++.++|..+++...++.|..|+..
T Consensus        12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~----~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~   86 (299)
T 2z2n_A           12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-G----KITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK   86 (299)
T ss_dssp             SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-C----CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-C----CeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC
Confidence            455689999999999988887778899999766 3    2222 222345678999999999877776667888888764


Q ss_pred             cCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCC
Q 005656          123 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP  202 (685)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  202 (685)
                       ++ ...+.                                                     .             +...
T Consensus        87 -g~-~~~~~-----------------------------------------------------~-------------~~~~   98 (299)
T 2z2n_A           87 -GI-IKEYT-----------------------------------------------------L-------------PNPD   98 (299)
T ss_dssp             -SC-EEEEE-----------------------------------------------------C-------------SSTT
T ss_pred             -Cc-EEEEe-----------------------------------------------------C-------------CCcC
Confidence             21 11110                                                     0             0123


Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005656          203 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  282 (685)
Q Consensus       203 ~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~  282 (685)
                      ..+..+++.++|+..++...++.|.+||. ++.......       ..+...+.+++++++++.+++...++.|..||. 
T Consensus        99 ~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~-------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-  169 (299)
T 2z2n_A           99 SAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYEL-------PNKGSYPSFITLGSDNALWFTENQNNAIGRITE-  169 (299)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEEC-------SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-
T ss_pred             CCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecC-------CCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-
Confidence            46788999999988887777889999998 554432211       134457899999999987777766789999998 


Q ss_pred             CCceEEE-ee-cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEE-EecCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 005656          283 GRDLKSR-WE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRK-FEGHTDRITDFCFSEDGKWLLSSGMDGSL  359 (685)
Q Consensus       283 ~~~~~~~-~~-~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~-~~~h~~~I~~l~~spdg~~l~s~s~Dg~I  359 (685)
                      +++.... .. ....+..++++++|.++++...++.|.+||. +++.... ...+...+.+++++++|++.++...++.|
T Consensus       170 ~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i  248 (299)
T 2z2n_A          170 SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKI  248 (299)
T ss_dssp             TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEE
T ss_pred             CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceE
Confidence            6665442 22 2356789999999997777767889999999 6664332 23355679999999999977766678899


Q ss_pred             EEEEcCCCceeeEEeec---cceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656          360 RIWDVILARQIDAIHVD---VSITALSLSPNMDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       360 ~iwd~~~~~~i~~~~~~---~~v~~v~~spdg~~Lat~~~d~~~I~lW~~  406 (685)
                      ..||. ++. +..+...   ..+.++++ ++|.+.++.. .+ .|..++.
T Consensus       249 ~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~-~l~~~~~  293 (299)
T 2z2n_A          249 GRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CD-KIGKLTL  293 (299)
T ss_dssp             EEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TT-EEEEEEE
T ss_pred             EEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CC-cEEEEEc
Confidence            99998 454 3344322   34899999 8888777654 43 6777653

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.68  E-value=4.2e-15  Score=167.53  Aligned_cols=278  Identities=7%  Similarity=-0.015  Sum_probs=188.2

Q ss_pred             eCCCcEEEEecCCC---cEEEEEecCCCCCCceeEec----ccCCCCCeEEEEecCCCEEEEE-----eCCCceEEEEee
Q 005656           55 FANEPVLMSASADN---SIKMWIFDTTDGDPRLLRFR----SGHSAPPLCIRFYANGRHILSA-----GQDRAFRLFSVI  122 (685)
Q Consensus        55 sp~~~~l~s~s~D~---~v~iWd~~~~~~~~~~~~~~----~~h~~~v~~i~~~~~~~~l~s~-----s~dg~i~vwd~~  122 (685)
                      +|+|++++....++   .-.+|..+...+..+.+...    .+|...+.+++|||||++|+.+     +.+.+|++||+.
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~  155 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD  155 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence            47888877665543   46678776544444444322    2466678899999999999843     344689999987


Q ss_pred             cCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCC
Q 005656          123 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP  202 (685)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  202 (685)
                      +++......                                                                    ...
T Consensus       156 tg~~~~~~~--------------------------------------------------------------------~~~  167 (695)
T 2bkl_A          156 SGEWSKVDV--------------------------------------------------------------------IEG  167 (695)
T ss_dssp             TCCBCSSCC--------------------------------------------------------------------BSC
T ss_pred             CCCCcCCcc--------------------------------------------------------------------cCc
Confidence            765320000                                                                    001


Q ss_pred             CCeEEEEEccCCCEEEEEecCCc-------------EEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEE
Q 005656          203 TAVKACTISACGNFAVLGTAGGW-------------IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS  269 (685)
Q Consensus       203 ~~v~~~~~s~~g~~l~~g~~dg~-------------i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s  269 (685)
                      .....++|+|||+.++.++.+..             |++|++.++........    ....|...+.++.|+|+|++|+.
T Consensus       168 ~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~----~~~~~~~~~~~~~~SpDG~~l~~  243 (695)
T 2bkl_A          168 GKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVH----ERTGDPTTFLQSDLSRDGKYLFV  243 (695)
T ss_dssp             CTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEE----CCCCCTTCEEEEEECTTSCCEEE
T ss_pred             ccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEE----ecCCCCEEEEEEEECCCCCEEEE
Confidence            11257899999999999988765             99999998864322110    11245568899999999999888


Q ss_pred             EECCC----eEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeC----CCeEEEEEcCCCee--EEEEecC--CCC
Q 005656          270 AGYHG----DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVAD----DLVIRLFDVVALRM--VRKFEGH--TDR  337 (685)
Q Consensus       270 ~s~dg----~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~I~i~d~~~~~~--~~~~~~h--~~~  337 (685)
                      ++.++    .|++|+..++...........+....+ ++|+ ++..+.    ++.|.+||+.+++.  ...+..|  ...
T Consensus       244 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~  321 (695)
T 2bkl_A          244 YILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSAS  321 (695)
T ss_dssp             EEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCE
T ss_pred             EEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCe
Confidence            77666    678887766665555544455555556 6677 555443    57999999987753  2333333  456


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEcC-CCceeeEEeec--cceEEEEEcCCCCeEEEEEeCC---CeEEEEEcC
Q 005656          338 ITDFCFSEDGKWLLSSGMDGSLRIWDVI-LARQIDAIHVD--VSITALSLSPNMDVLATAHVDQ---NGVYLWVNR  407 (685)
Q Consensus       338 I~~l~~spdg~~l~s~s~Dg~I~iwd~~-~~~~i~~~~~~--~~v~~v~~spdg~~Lat~~~d~---~~I~lW~~~  407 (685)
                      +..++|+ ++.++++...|+..++|.+. ++.....+..+  ..+..++++|+++.++.+..+.   ..|++|+..
T Consensus       322 l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~  396 (695)
T 2bkl_A          322 LLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVS  396 (695)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETT
T ss_pred             EEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECC
Confidence            8888998 67788888999998888765 46666666544  3488899999998777554331   279999864

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.67  E-value=2.7e-14  Score=140.80  Aligned_cols=241  Identities=9%  Similarity=0.057  Sum_probs=181.8

Q ss_pred             CCcEEEEecCCCcEEEEEecCCCCCCceeEecccCC-CCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhH
Q 005656           57 NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHS-APPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV  135 (685)
Q Consensus        57 ~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~-~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~  135 (685)
                      .+++|++++.|+.|.+||..++    +.+..+..+. ..+.++.++|+|+.++  +.++.|..||. +++....+..   
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG----~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~---   73 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTK----EIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAA---   73 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTT----EEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEEC---
T ss_pred             CCcEEEeeCCCCEEEEEECCCC----eEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcC---
Confidence            3579999999999999998777    6666666665 5789999999999888  45777999887 6665444421   


Q ss_pred             HHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCC
Q 005656          136 AKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN  215 (685)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  215 (685)
                                                                                      .....+.++.+.++|+
T Consensus        74 ----------------------------------------------------------------~~~~~~~~~~~~~dG~   89 (276)
T 3no2_A           74 ----------------------------------------------------------------PAGCEMQTARILPDGN   89 (276)
T ss_dssp             ----------------------------------------------------------------CTTCEEEEEEECTTSC
T ss_pred             ----------------------------------------------------------------CCCccccccEECCCCC
Confidence                                                                            1123577888999999


Q ss_pred             EEEEEec-CCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCC
Q 005656          216 FAVLGTA-GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGC  294 (685)
Q Consensus       216 ~l~~g~~-dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  294 (685)
                      ++++.+. ++.|..+|. +|+....+.....  ...+......+++.++|+++++...++.|..||.. ++.+.++..+.
T Consensus        90 ~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~--~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~  165 (276)
T 3no2_A           90 ALVAWCGHPSTILEVNM-KGEVLSKTEFETG--IERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSG  165 (276)
T ss_dssp             EEEEEESTTEEEEEECT-TSCEEEEEEECCS--CSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSS
T ss_pred             EEEEecCCCCEEEEEeC-CCCEEEEEeccCC--CCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCC
Confidence            9999887 888888886 6665555431110  01222345566788999999999999999999998 99999988877


Q ss_pred             ceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCC------CCeEEEEEcCCCCEEEEEeCC--------CcEE
Q 005656          295 SLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT------DRITDFCFSEDGKWLLSSGMD--------GSLR  360 (685)
Q Consensus       295 ~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~------~~I~~l~~spdg~~l~s~s~D--------g~I~  360 (685)
                      .+..+...++|+++++++.++.|..+|..+|+.+.++..+.      ..+..++..++|+.+++....        +..+
T Consensus       166 ~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~  245 (276)
T 3no2_A          166 TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQ  245 (276)
T ss_dssp             CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCS
T ss_pred             CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCce
Confidence            77788889999999999988999999999999999987442      237888999999988877421        2345


Q ss_pred             EEEc-CCCceeeEEee
Q 005656          361 IWDV-ILARQIDAIHV  375 (685)
Q Consensus       361 iwd~-~~~~~i~~~~~  375 (685)
                      ++++ ++|+.+-.+..
T Consensus       246 ~~~~~~~g~~~W~~~~  261 (276)
T 3no2_A          246 LVEIDSEGKVVWQLND  261 (276)
T ss_dssp             EEEECTTSBEEEEECC
T ss_pred             EEEECCCCCEEEEecC
Confidence            6666 56776666543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.66  E-value=2.2e-14  Score=141.40  Aligned_cols=241  Identities=7%  Similarity=-0.027  Sum_probs=171.1

Q ss_pred             CeeEEEEeCCCcEEE-EecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCce
Q 005656           48 AIISLHFFANEPVLM-SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ  126 (685)
Q Consensus        48 ~V~~l~~sp~~~~l~-s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~  126 (685)
                      ...++++++++++++ +.+.++.|.+|+....    ........+...+.++++.++|+.+++.. ++.|.+||......
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~   99 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGST----GTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ   99 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC---------EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCc----ccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE
Confidence            678999999999777 5577889999975443    21112223445788999999998555555 88899998654321


Q ss_pred             eeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeE
Q 005656          127 SRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVK  206 (685)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~  206 (685)
                      . .+.                                                                   ......+.
T Consensus       100 ~-~~~-------------------------------------------------------------------~~~~~~p~  111 (270)
T 1rwi_B          100 T-VLP-------------------------------------------------------------------FDGLNYPE  111 (270)
T ss_dssp             E-ECC-------------------------------------------------------------------CCSCSSEE
T ss_pred             e-eee-------------------------------------------------------------------cCCcCCCc
Confidence            1 110                                                                   01124578


Q ss_pred             EEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCce
Q 005656          207 ACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDL  286 (685)
Q Consensus       207 ~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~  286 (685)
                      .++++++|+.+++...++.|.+|+..+.......        ......+.+++++++++++++...++.|.+||..+...
T Consensus       112 ~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~--------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~  183 (270)
T 1rwi_B          112 GLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP--------FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ  183 (270)
T ss_dssp             EEEECTTCCEEEEEGGGTEEEEECTTCCSCEECC--------CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred             ceEECCCCCEEEEECCCCEEEEEECCCceeEeec--------cccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce
Confidence            9999999997777778899999976554332211        12334678899999998777776788999999887665


Q ss_pred             EEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005656          287 KSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI  365 (685)
Q Consensus       287 ~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~  365 (685)
                      ....... ..+..++++++|.++++...++.|.+||............+...+.+++++++|+++++...++.|++|++.
T Consensus       184 ~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~  263 (270)
T 1rwi_B          184 VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL  263 (270)
T ss_dssp             EECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             EeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCC
Confidence            4432222 568899999999877777778999999987665443323344678999999999988888899999999987


Q ss_pred             CCce
Q 005656          366 LARQ  369 (685)
Q Consensus       366 ~~~~  369 (685)
                      ..+.
T Consensus       264 ~~~~  267 (270)
T 1rwi_B          264 EHHH  267 (270)
T ss_dssp             GGGS
T ss_pred             Cccc
Confidence            6654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.64  E-value=3.5e-14  Score=139.88  Aligned_cols=240  Identities=9%  Similarity=-0.002  Sum_probs=167.5

Q ss_pred             cEEEEEEccCCCCEEE-EEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCC
Q 005656            4 AVTALAFSSDGQPLLA-SGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP   82 (685)
Q Consensus         4 ~V~~l~fspdg~~~la-tg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~   82 (685)
                      ...+++++++|+ +++ +.+.++.|.+||..++....... .+...+.++++.++++++++.. ++.|.+|+.+..    
T Consensus        25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~----   97 (270)
T 1rwi_B           25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVLPF-NGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSN----   97 (270)
T ss_dssp             CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EECCC-CSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCS----
T ss_pred             CccceEECCCCC-EEEEccCCCCcEEEecCCCcccceEee-CCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCc----
Confidence            567999999998 777 54678899999987655433222 3445788999999999777766 889999976543    


Q ss_pred             ceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccc
Q 005656           83 RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI  162 (685)
Q Consensus        83 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (685)
                      ............+.++++.++|+.+++...++.|.+|+..+......                                 
T Consensus        98 ~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~---------------------------------  144 (270)
T 1rwi_B           98 NQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL---------------------------------  144 (270)
T ss_dssp             CCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC---------------------------------
T ss_pred             eEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee---------------------------------
Confidence            22212123335688999999998777767778888885432211000                                 


Q ss_pred             cccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccc
Q 005656          163 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD  242 (685)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~  242 (685)
                                                         .......+..++++++|+..++...++.|.+||...+....... 
T Consensus       145 -----------------------------------~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~-  188 (270)
T 1rwi_B          145 -----------------------------------PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPF-  188 (270)
T ss_dssp             -----------------------------------CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCC-
T ss_pred             -----------------------------------ccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecc-
Confidence                                               00112346788999999977777778899999988765433211 


Q ss_pred             ccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEE
Q 005656          243 MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFD  321 (685)
Q Consensus       243 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d  321 (685)
                             .+...+.+++++++|..+++...++.|.+|+..+.........+ ..+..++++++|+++++...++.|++|+
T Consensus       189 -------~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~  261 (270)
T 1rwi_B          189 -------TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT  261 (270)
T ss_dssp             -------SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             -------cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEc
Confidence                   33367899999999977777767889999998765543322222 5688999999999888888899999999


Q ss_pred             cCCCe
Q 005656          322 VVALR  326 (685)
Q Consensus       322 ~~~~~  326 (685)
                      +...+
T Consensus       262 ~~~~~  266 (270)
T 1rwi_B          262 SLEHH  266 (270)
T ss_dssp             CCGGG
T ss_pred             CCCcc
Confidence            87654

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.64  E-value=9.7e-13  Score=131.52  Aligned_cols=276  Identities=12%  Similarity=0.056  Sum_probs=190.5

Q ss_pred             CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCC
Q 005656            3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP   82 (685)
Q Consensus         3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~   82 (685)
                      ..+.+++++++|. +.++...++.|.+||.. ++........+...+.++++.+++.+.++...++.|..|+.+ +  ..
T Consensus        20 ~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g--~~   94 (300)
T 2qc5_A           20 SGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G--GF   94 (300)
T ss_dssp             CCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S--CE
T ss_pred             CCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C--Ce
Confidence            4678999999998 77776678999999988 555432222344679999999999988887778889888765 2  11


Q ss_pred             ceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccc
Q 005656           83 RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI  162 (685)
Q Consensus        83 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (685)
                      . ..........+.++++.++|+.+++...++.|..|+.. ++.. .+.                               
T Consensus        95 ~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~-------------------------------  140 (300)
T 2qc5_A           95 T-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-EYD-------------------------------  140 (300)
T ss_dssp             E-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EEE-------------------------------
T ss_pred             E-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-Ecc-------------------------------
Confidence            1 12222344678999999999877776667888888764 3221 110                               


Q ss_pred             cccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccc
Q 005656          163 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD  242 (685)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~  242 (685)
                                            .             ......+..+++.++|+..++...++.|.+|+. ++.... +. 
T Consensus       141 ----------------------~-------------~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~-  182 (300)
T 2qc5_A          141 ----------------------L-------------PNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YP-  182 (300)
T ss_dssp             ----------------------C-------------SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EE-
T ss_pred             ----------------------C-------------CCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-ee-
Confidence                                  0             012346788999999996666666789999998 554432 21 


Q ss_pred             ccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEE-ee-cCCceeEEEEeecCCEEEEEeCCCeEEEE
Q 005656          243 MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSR-WE-VGCSLVKIVYHRVNGLLATVADDLVIRLF  320 (685)
Q Consensus       243 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~-~~~~i~~~~~~~~~~~l~~~~~dg~I~i~  320 (685)
                           ...+...+.++++++++...++....+.|.+||. ++..... .. ....+.+++++++|++.++...++.|..|
T Consensus       183 -----~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~  256 (300)
T 2qc5_A          183 -----LPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRI  256 (300)
T ss_dssp             -----CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEE
T ss_pred             -----CCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEE
Confidence                 1134457899999999987766666778999998 4444332 22 23567899999999877766667899999


Q ss_pred             EcCCCeeEE-EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005656          321 DVVALRMVR-KFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV  364 (685)
Q Consensus       321 d~~~~~~~~-~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~  364 (685)
                      |. +++... .+......+.+++++++|++.++.. . .|..+|.
T Consensus       257 ~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p  298 (300)
T 2qc5_A          257 TN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL  298 (300)
T ss_dssp             CT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred             CC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence            98 454332 2233456689999999998666554 4 6766664

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.64  E-value=6.7e-14  Score=144.71  Aligned_cols=291  Identities=11%  Similarity=0.099  Sum_probs=189.0

Q ss_pred             cCCCCEEEEEeCC----CcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEec----------CCCcEEEEEecC
Q 005656           12 SDGQPLLASGASS----GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS----------ADNSIKMWIFDT   77 (685)
Q Consensus        12 pdg~~~latg~~d----g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s----------~D~~v~iWd~~~   77 (685)
                      ++++.++++...+    +.|.++|..+++.+..+..+. .+  .++++||+++|+.+.          .++.|.++|..+
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~-~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t  158 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF-LP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT  158 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS-SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC-CC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC
Confidence            4566344444433    799999999999999998443 34  899999999887775          367899998776


Q ss_pred             CCCCCceeEecc-c------CCCCCeEEEEecCCCEEEEEeC--CCceEEEEeecCceeeEechhhHHHHHhhccccccc
Q 005656           78 TDGDPRLLRFRS-G------HSAPPLCIRFYANGRHILSAGQ--DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEE  148 (685)
Q Consensus        78 ~~~~~~~~~~~~-~------h~~~v~~i~~~~~~~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (685)
                      .    +.+..+. +      ....+..+.|+|||++++++..  ++.|.+.|+.+.+....+...               
T Consensus       159 ~----~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~---------------  219 (426)
T 3c75_H          159 F----LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVP---------------  219 (426)
T ss_dssp             C----CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC---------------
T ss_pred             C----cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcC---------------
Confidence            6    4444332 1      1245678999999999999874  578999999988876665310               


Q ss_pred             cccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCC-CEEEEEecCCcEE
Q 005656          149 LKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGGWIE  227 (685)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~  227 (685)
                                                                            .   +....|+| ..+++.+.||.+.
T Consensus       220 ------------------------------------------------------g---~~~~~p~g~~~~v~~~~dG~~~  242 (426)
T 3c75_H          220 ------------------------------------------------------D---CYHIFPASPTVFYMNCRDGSLA  242 (426)
T ss_dssp             ------------------------------------------------------S---EEEEEEEETTEEEEEETTSSEE
T ss_pred             ------------------------------------------------------C---ceeeccCCCcEEEEEcCCCCEE
Confidence                                                                  0   01111211 2333334444444


Q ss_pred             EEECCCCccccccccccccccCCCCcC-EEEEEEcCCCCEEEEEECCCeEEEEECCCCceE--EEeec-----------C
Q 005656          228 RFNLQSGISRGSYLDMSERSNYAHNGE-VVGVACDSTNTLMISAGYHGDIKVWDFKGRDLK--SRWEV-----------G  293 (685)
Q Consensus       228 ~~d~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~-----------~  293 (685)
                      +.+..+++.......    .......+ ...+.+.+++..++..+..+.|.+.|..+....  ..+..           .
T Consensus       243 ~V~~~~~~v~~~~~~----~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p  318 (426)
T 3c75_H          243 RVDFADGETKVTNTE----VFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRP  318 (426)
T ss_dssp             EEECCTTCCEEEECC----CCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEE
T ss_pred             EEECCCCcEEEEeee----eeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccccccccc
Confidence            444433322210000    00001111 113467888888877788899999998765432  11111           1


Q ss_pred             CceeEEEEeecCCEEEEEeC----------CCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCC-EEEEEe-CCCcEEE
Q 005656          294 CSLVKIVYHRVNGLLATVAD----------DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK-WLLSSG-MDGSLRI  361 (685)
Q Consensus       294 ~~i~~~~~~~~~~~l~~~~~----------dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~-~l~s~s-~Dg~I~i  361 (685)
                      .....++++|+++.+++...          ++.|.++|..+++.+.++.... ....++|+|||+ +++++. .++.|.|
T Consensus       319 ~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsV  397 (426)
T 3c75_H          319 GGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHI  397 (426)
T ss_dssp             CSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEE
T ss_pred             CCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEE
Confidence            22233789999997777642          3579999999999999887432 478999999999 888887 5899999


Q ss_pred             EEcCCCceeeEE-eeccceEEEEEcCC
Q 005656          362 WDVILARQIDAI-HVDVSITALSLSPN  387 (685)
Q Consensus       362 wd~~~~~~i~~~-~~~~~v~~v~~spd  387 (685)
                      +|+.+++.+..+ ....... +..+||
T Consensus       398 ID~~t~kvv~tI~~vG~~P~-~i~~~~  423 (426)
T 3c75_H          398 YDAATGEELRSVDQLGRGPQ-IITTHD  423 (426)
T ss_dssp             EETTTCCEEEEECCCSSSCC-EEECCC
T ss_pred             EECCCCCEEEEecCCCCCCc-EEEcCC
Confidence            999999999887 3333222 444454

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.63  E-value=1.3e-12  Score=134.41  Aligned_cols=274  Identities=8%  Similarity=-0.039  Sum_probs=185.6

Q ss_pred             EeCCCcEEEEecC--CC---cEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEe----------CCCceEE
Q 005656           54 FFANEPVLMSASA--DN---SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG----------QDRAFRL  118 (685)
Q Consensus        54 ~sp~~~~l~s~s~--D~---~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s----------~dg~i~v  118 (685)
                      ..|++++++++..  .+   +|.++|..++    +.+..+.....+  .+.++|||++++.+.          .++.|.+
T Consensus        28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~----~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~v  101 (373)
T 2mad_H           28 PGADGRRSYINLPAHHSAIIQQWVLDAGSG----SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEV  101 (373)
T ss_pred             CCCCCCEEEEeCCcccCCccEEEEEECCCC----eEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEE
Confidence            3467776666653  22   7889988766    555555443333  999999999999886          3678999


Q ss_pred             EEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCC
Q 005656          119 FSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC  198 (685)
Q Consensus       119 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  198 (685)
                      ||..+.+....+.....                                                        ..     
T Consensus       102 iD~~t~~~~~~i~~~~~--------------------------------------------------------~~-----  120 (373)
T 2mad_H          102 FDPVTFLPIADIELPDA--------------------------------------------------------PR-----  120 (373)
T ss_pred             EECCCCcEEEEEECCCc--------------------------------------------------------cc-----
Confidence            99977665554421100                                                        00     


Q ss_pred             CCCCCCeEEEEEccCCCEEEEEec--CCcEEEEECCCCccccc-cccccccccCCCCcCEEEEEEcCCC-CEEEEEECCC
Q 005656          199 PENPTAVKACTISACGNFAVLGTA--GGWIERFNLQSGISRGS-YLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHG  274 (685)
Q Consensus       199 ~~~~~~v~~~~~s~~g~~l~~g~~--dg~i~~~d~~~~~~~~~-~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg  274 (685)
                      .........++++|+|++++++..  ++.|.++| .+++.... +.         ..+   ++.+.|.+ +.+++.+.||
T Consensus       121 ~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~---------~~~---~~~~~~~~~~~~~~~~~dg  187 (373)
T 2mad_H          121 FDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS---------SPT---CYHIHPGAPSTFYLLCAQG  187 (373)
T ss_pred             cccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC---------CCc---eEEEEeCCCceEEEEcCCC
Confidence            000123458899999999999874  57899999 99887665 42         112   23444554 4566777899


Q ss_pred             eEEEEECCCCceEEEee-----c-CCc-eeEEEEeecCCEEEEEeCCCeEEEEEcCCC--eeEEEEecC----------C
Q 005656          275 DIKVWDFKGRDLKSRWE-----V-GCS-LVKIVYHRVNGLLATVADDLVIRLFDVVAL--RMVRKFEGH----------T  335 (685)
Q Consensus       275 ~i~iwd~~~~~~~~~~~-----~-~~~-i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~--~~~~~~~~h----------~  335 (685)
                      .+.++|. +++......     . ..+ .....+.+++..++..+..+.+.+.|+.++  +.+..+.-.          .
T Consensus       188 ~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p  266 (373)
T 2mad_H          188 GLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRP  266 (373)
T ss_pred             CEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceec
Confidence            9999999 777664322     1 122 123456777665555557889999999765  333333211          1


Q ss_pred             CCeEEEEEcCCCCEEEEEeC----------CCcEEEEEcCCCceeeEEeeccceEEEEEcCCCC-eEEEEEeCCCeEEEE
Q 005656          336 DRITDFCFSEDGKWLLSSGM----------DGSLRIWDVILARQIDAIHVDVSITALSLSPNMD-VLATAHVDQNGVYLW  404 (685)
Q Consensus       336 ~~I~~l~~spdg~~l~s~s~----------Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~-~Lat~~~d~~~I~lW  404 (685)
                      .....++++||++.++.+..          ++.|.++|..+++.+..+.......+++|+|||+ .++++....+.|.+|
T Consensus       267 ~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~Vi  346 (373)
T 2mad_H          267 GGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIY  346 (373)
T ss_pred             CceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEE
Confidence            22445789999988777643          3579999999999999998877899999999999 777777544599999


Q ss_pred             EcCC
Q 005656          405 VNRC  408 (685)
Q Consensus       405 ~~~~  408 (685)
                      |...
T Consensus       347 D~~t  350 (373)
T 2mad_H          347 DAGA  350 (373)
T ss_pred             ECCC
Confidence            8543

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.62  E-value=4.4e-13  Score=135.16  Aligned_cols=198  Identities=12%  Similarity=0.063  Sum_probs=141.9

Q ss_pred             CCeEEEEEccC-CCEEEEEecCCcEEEEECCCCccccc-cccccccccCCCCcCEEEEEEcCCCCEEEEEECC-------
Q 005656          203 TAVKACTISAC-GNFAVLGTAGGWIERFNLQSGISRGS-YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH-------  273 (685)
Q Consensus       203 ~~v~~~~~s~~-g~~l~~g~~dg~i~~~d~~~~~~~~~-~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d-------  273 (685)
                      ..+.+++++++ |+ +++++..+.|.+||.. +..... ...    ....+...+.+++++++|+++++...+       
T Consensus        71 ~~~~~i~~~~~~g~-l~v~~~~~~l~~~d~~-g~~~~~~~~~----~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~  144 (314)
T 1pjx_A           71 GIPAGCQCDRDANQ-LFVADMRLGLLVVQTD-GTFEEIAKKD----SEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADY  144 (314)
T ss_dssp             CCEEEEEECSSSSE-EEEEETTTEEEEEETT-SCEEECCSBC----TTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCC
T ss_pred             CCCceEEEecCCCc-EEEEECCCCEEEEeCC-CCEEEEEecc----CCCccccCCcCEEECCCCCEEEEecCcccccccc
Confidence            45789999999 65 4444445579999998 654322 110    000223468899999999887776655       


Q ss_pred             --------CeEEEEECCCCceEEEeecCCceeEEEEe----ecCCEEEEE-eCCCeEEEEEcC-CCe-----eEEEEecC
Q 005656          274 --------GDIKVWDFKGRDLKSRWEVGCSLVKIVYH----RVNGLLATV-ADDLVIRLFDVV-ALR-----MVRKFEGH  334 (685)
Q Consensus       274 --------g~i~iwd~~~~~~~~~~~~~~~i~~~~~~----~~~~~l~~~-~~dg~I~i~d~~-~~~-----~~~~~~~h  334 (685)
                              +.|..||.. ++.............++++    |+++.++++ ..++.|.+||.. +++     ....+.++
T Consensus       145 ~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~  223 (314)
T 1pjx_A          145 TRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGT  223 (314)
T ss_dssp             CBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCC
T ss_pred             cccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCC
Confidence                    577788766 5554444434556889999    999765555 567899999986 454     22333344


Q ss_pred             C-CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeec-cceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          335 T-DRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVD-VSITALSLSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       335 ~-~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~-~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                      . ..+..++++++|+++++...++.|.+||..+++.+..+..+ ..+.+++|+|+|+.|++++.+.+.|..|+..
T Consensus       224 ~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~  298 (314)
T 1pjx_A          224 HEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             SSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             CCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence            4 66889999999998888878889999999878887777766 4599999999999777776655589998753

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.60  E-value=8.8e-14  Score=157.83  Aligned_cols=277  Identities=10%  Similarity=-0.002  Sum_probs=181.5

Q ss_pred             eCCCcEEEEecCCC---cEEEEEecCC---CCCCceeEe----cccCCCCCeEEEEecCCCEEEEEeCC-----CceEEE
Q 005656           55 FANEPVLMSASADN---SIKMWIFDTT---DGDPRLLRF----RSGHSAPPLCIRFYANGRHILSAGQD-----RAFRLF  119 (685)
Q Consensus        55 sp~~~~l~s~s~D~---~v~iWd~~~~---~~~~~~~~~----~~~h~~~v~~i~~~~~~~~l~s~s~d-----g~i~vw  119 (685)
                      +|+|++++....++   .-.+|..+..   .+..+.+..    -.+|...+..++|+|||++|+.++.+     ..|++|
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~  194 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV  194 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence            48899887665544   3678877654   333333311    12344467889999999999877654     359999


Q ss_pred             EeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCC
Q 005656          120 SVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCP  199 (685)
Q Consensus       120 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  199 (685)
                      |+.+++......                                                                    
T Consensus       195 dl~tg~~~~~~~--------------------------------------------------------------------  206 (741)
T 1yr2_A          195 GVADGKPLADEL--------------------------------------------------------------------  206 (741)
T ss_dssp             ETTTCCEEEEEE--------------------------------------------------------------------
T ss_pred             ECCCCCCCCccC--------------------------------------------------------------------
Confidence            998776432110                                                                    


Q ss_pred             CCCCCeEEEEEccCCCEEEEEecCCc--------------EEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCC
Q 005656          200 ENPTAVKACTISACGNFAVLGTAGGW--------------IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT  265 (685)
Q Consensus       200 ~~~~~v~~~~~s~~g~~l~~g~~dg~--------------i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  265 (685)
                       ....+..++|+|+ +.++.+..++.              |++|++.++........    ....+...+.++.|+|+|+
T Consensus       207 -~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~----~~~~~~~~~~~~~~SpDG~  280 (741)
T 1yr2_A          207 -KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVF----ATPELPKRGHGASVSSDGR  280 (741)
T ss_dssp             -EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEE----CCTTCTTCEEEEEECTTSC
T ss_pred             -CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEe----ccCCCCeEEEEEEECCCCC
Confidence             0011235789999 88888776543              89999987764322110    1113444688999999999


Q ss_pred             EEEEEECCC-----eEEEEECCCC--c-eEEEeecCCceeEEEEeecCCEEEEEeC----CCeEEEEEcCCC--eeEEEE
Q 005656          266 LMISAGYHG-----DIKVWDFKGR--D-LKSRWEVGCSLVKIVYHRVNGLLATVAD----DLVIRLFDVVAL--RMVRKF  331 (685)
Q Consensus       266 ~l~s~s~dg-----~i~iwd~~~~--~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~I~i~d~~~~--~~~~~~  331 (685)
                      +|+..+.++     .|++||+.++  . .............. ++|+|+.|+..+.    ++.|.+||+.++  +....+
T Consensus       281 ~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~  359 (741)
T 1yr2_A          281 WVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVV  359 (741)
T ss_dssp             EEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEE
T ss_pred             EEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEe
Confidence            988877544     8999999877  4 33333333334444 4589998888776    356999999885  344444


Q ss_pred             ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC-CCceeeEEeec--cceEEEEEcCCCCeEEEEEeCC---CeEEEEE
Q 005656          332 EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI-LARQIDAIHVD--VSITALSLSPNMDVLATAHVDQ---NGVYLWV  405 (685)
Q Consensus       332 ~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~-~~~~i~~~~~~--~~v~~v~~spdg~~Lat~~~d~---~~I~lW~  405 (685)
                      ..+...+..++|+ ++.++++...|+..++|.+. ++.....+..+  ..+..++++|+++.|+.+..+.   ..|++|+
T Consensus       360 ~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d  438 (741)
T 1yr2_A          360 PESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALD  438 (741)
T ss_dssp             CCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEE
T ss_pred             cCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEE
Confidence            4555567778887 56677888889988777665 46666666543  4488999999998776544321   3799998


Q ss_pred             cC
Q 005656          406 NR  407 (685)
Q Consensus       406 ~~  407 (685)
                      ..
T Consensus       439 ~~  440 (741)
T 1yr2_A          439 PA  440 (741)
T ss_dssp             TT
T ss_pred             CC
Confidence            64

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.60  E-value=1.5e-13  Score=135.33  Aligned_cols=238  Identities=12%  Similarity=0.082  Sum_probs=171.7

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeeeEEeecccc-cCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccC-
Q 005656           14 GQPLLASGASSGVISIWNLEKRRLQSVIREAHD-NAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGH-   91 (685)
Q Consensus        14 g~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~-~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h-   91 (685)
                      ++ +|++++.++.|.+||.++++.+..+. .+. ..+.++.++|+|+++++  .++.|..||. ++    +.+..+..+ 
T Consensus         5 ~~-~lv~~~~~~~v~~~d~~tG~~~w~~~-~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G----~~~W~~~~~~   75 (276)
T 3no2_A            5 QH-LLVGGSGWNKIAIINKDTKEIVWEYP-LEKGWECNSVAATKAGEILFS--YSKGAKMITR-DG----RELWNIAAPA   75 (276)
T ss_dssp             CE-EEEECTTCSEEEEEETTTTEEEEEEE-CCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TS----CEEEEEECCT
T ss_pred             Cc-EEEeeCCCCEEEEEECCCCeEEEEeC-CCccCCCcCeEECCCCCEEEe--CCCCEEEECC-CC----CEEEEEcCCC
Confidence            45 89999999999999999999999988 554 57899999999999984  4678888876 44    455555443 


Q ss_pred             CCCCeEEEEecCCCEEEEEeC-CCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcce
Q 005656           92 SAPPLCIRFYANGRHILSAGQ-DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNV  170 (685)
Q Consensus        92 ~~~v~~i~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (685)
                      ...+.++.+.++|+.+++.+. ++.+..++. +++....+.                                       
T Consensus        76 ~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~---------------------------------------  115 (276)
T 3no2_A           76 GCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTE---------------------------------------  115 (276)
T ss_dssp             TCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEE---------------------------------------
T ss_pred             CccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEe---------------------------------------
Confidence            346788999999999998887 666666654 444433331                                       


Q ss_pred             EEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCC
Q 005656          171 VTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYA  250 (685)
Q Consensus       171 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~  250 (685)
                                    +....         .........+++.++|+++++.+.++.|..||.. |+....+..        
T Consensus       116 --------------~~~~~---------~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~--------  163 (276)
T 3no2_A          116 --------------FETGI---------ERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKL--------  163 (276)
T ss_dssp             --------------ECCSC---------SSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEEC--------
T ss_pred             --------------ccCCC---------CcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEEC--------
Confidence                          10000         0011123345678999999999999999999998 888877641        


Q ss_pred             CCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-------CceeEEEEeecCCEEEEEeCC--------C
Q 005656          251 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-------CSLVKIVYHRVNGLLATVADD--------L  315 (685)
Q Consensus       251 h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-------~~i~~~~~~~~~~~l~~~~~d--------g  315 (685)
                       ...+.++.+.++++.+++++.++.|..+|..+++.+.++...       ..+..+...++|+++++....        +
T Consensus       164 -~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~  242 (276)
T 3no2_A          164 -SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGK  242 (276)
T ss_dssp             -SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSC
T ss_pred             -CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccC
Confidence             234556788899999998888889999999999999888642       126677778888877776422        2


Q ss_pred             eEEEEEc-CCCeeEEEEec
Q 005656          316 VIRLFDV-VALRMVRKFEG  333 (685)
Q Consensus       316 ~I~i~d~-~~~~~~~~~~~  333 (685)
                      ..+++.+ .+++.+.++..
T Consensus       243 ~~~~~~~~~~g~~~W~~~~  261 (276)
T 3no2_A          243 HPQLVEIDSEGKVVWQLND  261 (276)
T ss_dssp             CCSEEEECTTSBEEEEECC
T ss_pred             CceEEEECCCCCEEEEecC
Confidence            3345555 45666666654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.59  E-value=1.7e-13  Score=155.55  Aligned_cols=292  Identities=11%  Similarity=0.036  Sum_probs=174.1

Q ss_pred             ccCCCCEEEEEe-CCC--cEEEE--eCC---CCeeeEE-----eecccccCeeEEEEeCCCcEEEEecCC-----CcEEE
Q 005656           11 SSDGQPLLASGA-SSG--VISIW--NLE---KRRLQSV-----IREAHDNAIISLHFFANEPVLMSASAD-----NSIKM   72 (685)
Q Consensus        11 spdg~~~latg~-~dg--~I~vw--d~~---~~~~~~~-----~~~~h~~~V~~l~~sp~~~~l~s~s~D-----~~v~i   72 (685)
                      +|||+ .++... ..+  .-.+|  +..   .+.....     +..+|...+.+++|||||++|+.++.+     .+|++
T Consensus       115 ~pdG~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v  193 (741)
T 1yr2_A          115 QRRGA-SVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKF  193 (741)
T ss_dssp             EEETT-EEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEE
T ss_pred             EEECC-EEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEE
Confidence            48998 555433 333  24444  444   3433322     222444578899999999998877543     46999


Q ss_pred             EEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccC
Q 005656           73 WIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK  152 (685)
Q Consensus        73 Wd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (685)
                      ||++++.    .+.. ..+...+..++|+|| +.|+.++.++..+-     +.    .                      
T Consensus       194 ~dl~tg~----~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~-----~~----~----------------------  236 (741)
T 1yr2_A          194 VGVADGK----PLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEG-----QA----F----------------------  236 (741)
T ss_dssp             EETTTCC----EEEE-EEEEEESCCCEESTT-SEEEEEECCCC-------------------------------------
T ss_pred             EECCCCC----CCCc-cCCCceeccEEEECC-CEEEEEEecCcccc-----cc----c----------------------
Confidence            9988763    3322 112223467899999 99998887654100     00    0                      


Q ss_pred             ceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCC-----cEE
Q 005656          153 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG-----WIE  227 (685)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg-----~i~  227 (685)
                                         ........++.|++.........+.....+...+..+.|||+|+++++...++     .|+
T Consensus       237 -------------------~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~  297 (741)
T 1yr2_A          237 -------------------QALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVH  297 (741)
T ss_dssp             ---------------------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEE
T ss_pred             -------------------ccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEE
Confidence                               00000112233333222111111111113334578999999999998887654     899


Q ss_pred             EEECCCC--ccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC----CeEEEEECCCC--ceEEEeecC-CceeE
Q 005656          228 RFNLQSG--ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH----GDIKVWDFKGR--DLKSRWEVG-CSLVK  298 (685)
Q Consensus       228 ~~d~~~~--~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d----g~i~iwd~~~~--~~~~~~~~~-~~i~~  298 (685)
                      +||+.++  .....+.        .+...+.... +|+|+.|+..+.+    +.|.+||+.++  .....+... ..+..
T Consensus       298 ~~d~~~~~~~~~~~l~--------~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~  368 (741)
T 1yr2_A          298 VARVTNGKIGPVTALI--------PDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLES  368 (741)
T ss_dssp             EEEEETTEECCCEEEE--------CSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEE
T ss_pred             EEECCCCCCcccEEec--------CCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEE
Confidence            9999876  3122221        3334444443 4888888877753    45999999874  333333333 34556


Q ss_pred             EEEeecCCEEEEEeCCCeEEEEEcC-CCeeEEEEec-CCCCeEEEEEcCCCCEEEEE-e---CCCcEEEEEcCCCce
Q 005656          299 IVYHRVNGLLATVADDLVIRLFDVV-ALRMVRKFEG-HTDRITDFCFSEDGKWLLSS-G---MDGSLRIWDVILARQ  369 (685)
Q Consensus       299 ~~~~~~~~~l~~~~~dg~I~i~d~~-~~~~~~~~~~-h~~~I~~l~~spdg~~l~s~-s---~Dg~I~iwd~~~~~~  369 (685)
                      +.++ ++.++++...|+..+||.+. +++..+.+.. +.+.|..++++|+++.|+.. +   ..++|++||+.+++.
T Consensus       369 ~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          369 VGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT  444 (741)
T ss_dssp             EEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred             EEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            7776 56688888889887777554 4666666664 36778999999998866522 2   347899999988763

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.58  E-value=3.6e-13  Score=136.61  Aligned_cols=277  Identities=9%  Similarity=0.018  Sum_probs=189.7

Q ss_pred             EEEeCCCcEEEEecC-----CCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEe----------CCCce
Q 005656           52 LHFFANEPVLMSASA-----DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG----------QDRAF  116 (685)
Q Consensus        52 l~~sp~~~~l~s~s~-----D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s----------~dg~i  116 (685)
                      ....|+++.++....     ++.|.+.|..+.    +.+..+.....+ . +.++|||+++++++          .++.|
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~----~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~V  111 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAG----RVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYV  111 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTT----EEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCC----eEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEE
Confidence            445688887777654     678999988776    666665544444 4 99999999988775          36789


Q ss_pred             EEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeec
Q 005656          117 RLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR  196 (685)
Q Consensus       117 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  196 (685)
                      .+||..+.+....+..+.-                                                        ++   
T Consensus       112 sviD~~t~~v~~~I~v~~g--------------------------------------------------------~r---  132 (386)
T 3sjl_D          112 EVFDPVTLLPTADIELPDA--------------------------------------------------------PR---  132 (386)
T ss_dssp             EEECTTTCCEEEEEEETTC--------------------------------------------------------CC---
T ss_pred             EEEECCCCeEEEEEECCCc--------------------------------------------------------cc---
Confidence            9999988876665531100                                                        00   


Q ss_pred             CCCCCCCCeEEEEEccCCCEEEEEec--CCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCC
Q 005656          197 PCPENPTAVKACTISACGNFAVLGTA--GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG  274 (685)
Q Consensus       197 ~~~~~~~~v~~~~~s~~g~~l~~g~~--dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg  274 (685)
                        .........++++|+|++++++..  ++.|.++|+.+++....+..       .  + . ...+....+.+++.+.||
T Consensus       133 --~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v-------~--g-~-~~~~P~g~~~~~~~~~DG  199 (386)
T 3sjl_D          133 --FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV-------P--D-C-YHIFPTAPDTFFMHCRDG  199 (386)
T ss_dssp             --CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC-------C--S-E-EEEEEEETTEEEEEETTS
T ss_pred             --cccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC-------C--C-c-ceeecCCCceeEEECCCC
Confidence              001224557899999999999874  68999999999998877631       1  1 1 122333446677888899


Q ss_pred             eEEEEECCC-CceEEEeecC-----Cce-eEEEEe-ecCCEEEEEeCCCeEEEEEcCCCe--eEEEEe---------c-C
Q 005656          275 DIKVWDFKG-RDLKSRWEVG-----CSL-VKIVYH-RVNGLLATVADDLVIRLFDVVALR--MVRKFE---------G-H  334 (685)
Q Consensus       275 ~i~iwd~~~-~~~~~~~~~~-----~~i-~~~~~~-~~~~~l~~~~~dg~I~i~d~~~~~--~~~~~~---------~-h  334 (685)
                      .+.+.++.+ ++........     .++ ....|. ++|++++ .+.+|.|+++|..++.  .+..+.         + .
T Consensus       200 ~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~  278 (386)
T 3sjl_D          200 SLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWR  278 (386)
T ss_dssp             CEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEE
T ss_pred             CEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceecccccccccccc
Confidence            999998876 5543322111     122 124554 5665544 5568999999997653  333332         0 1


Q ss_pred             CCCeEEEEEcCCCCEEEEEeC----------CCcEEEEEcCCCceeeEEeeccceEEEEEcCCCC-eEEEEEeCCCeEEE
Q 005656          335 TDRITDFCFSEDGKWLLSSGM----------DGSLRIWDVILARQIDAIHVDVSITALSLSPNMD-VLATAHVDQNGVYL  403 (685)
Q Consensus       335 ~~~I~~l~~spdg~~l~s~s~----------Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~-~Lat~~~d~~~I~l  403 (685)
                      .+....++++++++.++.+..          .+.|.+.|+.+++.+..+.....+.+++++||++ +|+++...++.|.+
T Consensus       279 p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~~VsV  358 (386)
T 3sjl_D          279 PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYI  358 (386)
T ss_dssp             ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTTTEEEE
T ss_pred             CCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCCCeEEE
Confidence            123345788999998877642          2579999999999999999888899999999997 77887765569999


Q ss_pred             EEcC
Q 005656          404 WVNR  407 (685)
Q Consensus       404 W~~~  407 (685)
                      +|..
T Consensus       359 iD~~  362 (386)
T 3sjl_D          359 HDAE  362 (386)
T ss_dssp             EETT
T ss_pred             EECC
Confidence            9853

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.58  E-value=8.4e-12  Score=124.64  Aligned_cols=273  Identities=11%  Similarity=0.024  Sum_probs=191.8

Q ss_pred             cccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeE-ecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeec
Q 005656           45 HDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLR-FRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ  123 (685)
Q Consensus        45 h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~-~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~  123 (685)
                      ....+.++++.++|.+.++...++.|.+|+.. +    +... ....+...+.++++.++|+.+++...++.|..||.. 
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~----~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-   91 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-G----RIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-   91 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S----CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-C----ceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-
Confidence            45678999999999988888788999999765 3    2222 223344678999999999877776667888888765 


Q ss_pred             CceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCC
Q 005656          124 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT  203 (685)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  203 (685)
                      ++. ..+.                                                     .             .....
T Consensus        92 g~~-~~~~-----------------------------------------------------~-------------~~~~~  104 (300)
T 2qc5_A           92 GGF-TEYP-----------------------------------------------------L-------------PQPDS  104 (300)
T ss_dssp             SCE-EEEE-----------------------------------------------------C-------------SSTTC
T ss_pred             CCe-EEec-----------------------------------------------------C-------------CCCCC
Confidence            322 1110                                                     0             01235


Q ss_pred             CeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005656          204 AVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG  283 (685)
Q Consensus       204 ~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~  283 (685)
                      .+..+++.++|+..++...++.|..||.. +.......       ......+.+++++++++..++...++.|..||. +
T Consensus       105 ~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~-------~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~  175 (300)
T 2qc5_A          105 GPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDL-------PNKGSYPAFITLGSDNALWFTENQNNSIGRITN-T  175 (300)
T ss_dssp             CEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEEC-------SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-T
T ss_pred             CCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccC-------CCCCCCceeEEECCCCCEEEEecCCCeEEEECC-C
Confidence            57899999999988877778899999987 54432111       124457899999999996666666789999998 5


Q ss_pred             CceEEEeec---CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEE-EecCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 005656          284 RDLKSRWEV---GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRK-FEGHTDRITDFCFSEDGKWLLSSGMDGSL  359 (685)
Q Consensus       284 ~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~-~~~h~~~I~~l~~spdg~~l~s~s~Dg~I  359 (685)
                      ++... +..   ...+..++++++|.++++....+.|.+||. +++.... +..+...+.+++++++|++.++...++.|
T Consensus       176 g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i  253 (300)
T 2qc5_A          176 GKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQI  253 (300)
T ss_dssp             CCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEE
T ss_pred             CcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeE
Confidence            55443 322   246789999999987777777789999998 5544332 33455678999999999977776667899


Q ss_pred             EEEEcCCCceeeEEeec---cceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656          360 RIWDVILARQIDAIHVD---VSITALSLSPNMDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       360 ~iwd~~~~~~i~~~~~~---~~v~~v~~spdg~~Lat~~~d~~~I~lW~~  406 (685)
                      ..|+. +++.. .+...   ..+.+++++++|.+.++..  + .|..++.
T Consensus       254 ~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~--~-~i~~~~p  298 (300)
T 2qc5_A          254 GRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK--C-KIGKLNL  298 (300)
T ss_dssp             EEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS--S-EEEEEEE
T ss_pred             EEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc--C-ceEEeCC
Confidence            99997 45443 33322   3488999999998665543  3 6766653

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.54  E-value=2e-12  Score=130.30  Aligned_cols=241  Identities=12%  Similarity=0.056  Sum_probs=165.5

Q ss_pred             ccCeeEEEEeCCCcEEEE-------ecCCCcEEEEEecCCCCCCceeEec----ccCCCCCeEEEEecC-CCEEEEEeCC
Q 005656           46 DNAIISLHFFANEPVLMS-------ASADNSIKMWIFDTTDGDPRLLRFR----SGHSAPPLCIRFYAN-GRHILSAGQD  113 (685)
Q Consensus        46 ~~~V~~l~~sp~~~~l~s-------~s~D~~v~iWd~~~~~~~~~~~~~~----~~h~~~v~~i~~~~~-~~~l~s~s~d  113 (685)
                      -....+++|++++.++++       +..++.|.+|+..++    +.....    .++...+.+++++++ |+.++ ++..
T Consensus        17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g----~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v-~~~~   91 (314)
T 1pjx_A           17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTG----KKTVICKPEVNGYGGIPAGCQCDRDANQLFV-ADMR   91 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTC----CEEEEECCEETTEECCEEEEEECSSSSEEEE-EETT
T ss_pred             CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCC----cEEEEEecccCCCCCCCceEEEecCCCcEEE-EECC
Confidence            345689999999988888       567889999976554    222111    124567899999999 65444 4444


Q ss_pred             CceEEEEeecCceeeE-echhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCc
Q 005656          114 RAFRLFSVIQDQQSRE-LSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGE  192 (685)
Q Consensus       114 g~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~  192 (685)
                      +.|.+||.. ++.... ...                                                            
T Consensus        92 ~~l~~~d~~-g~~~~~~~~~------------------------------------------------------------  110 (314)
T 1pjx_A           92 LGLLVVQTD-GTFEEIAKKD------------------------------------------------------------  110 (314)
T ss_dssp             TEEEEEETT-SCEEECCSBC------------------------------------------------------------
T ss_pred             CCEEEEeCC-CCEEEEEecc------------------------------------------------------------
Confidence            578888875 432111 100                                                            


Q ss_pred             eeecCCCCCCCCeEEEEEccCCCEEEEEecC---------------CcEEEEECCCCccccccccccccccCCCCcCEEE
Q 005656          193 HILRPCPENPTAVKACTISACGNFAVLGTAG---------------GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVG  257 (685)
Q Consensus       193 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d---------------g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~  257 (685)
                          ........+.+++++++|+..++...+               +.|..|+.. +......         .+.....+
T Consensus       111 ----~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~---------~~~~~~~~  176 (314)
T 1pjx_A          111 ----SEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD---------TAFQFPNG  176 (314)
T ss_dssp             ----TTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE---------EEESSEEE
T ss_pred             ----CCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec---------cCCCCcce
Confidence                000112346789999999877776655               578888765 4432221         23345688


Q ss_pred             EEEc----CCCCEEEEE-ECCCeEEEEECC-CCce-----EEEeecC--CceeEEEEeecCCEEEEEeCCCeEEEEEcCC
Q 005656          258 VACD----STNTLMISA-GYHGDIKVWDFK-GRDL-----KSRWEVG--CSLVKIVYHRVNGLLATVADDLVIRLFDVVA  324 (685)
Q Consensus       258 l~~~----~~~~~l~s~-s~dg~i~iwd~~-~~~~-----~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~  324 (685)
                      ++++    ++++.++.+ ..++.|.+||.. ++..     ...+...  ..+..++++++|+++++...++.|.+||..+
T Consensus       177 i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~  256 (314)
T 1pjx_A          177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDG  256 (314)
T ss_dssp             EEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTC
T ss_pred             EEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCC
Confidence            9999    999766555 467899999986 4432     1222222  4578899999999888887889999999987


Q ss_pred             CeeEEEEecCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEEcCC
Q 005656          325 LRMVRKFEGHTDRITDFCFSEDGKWLL-SSGMDGSLRIWDVIL  366 (685)
Q Consensus       325 ~~~~~~~~~h~~~I~~l~~spdg~~l~-s~s~Dg~I~iwd~~~  366 (685)
                      ++.+..+..+...+.+++|+|+|++|+ +...++.|..|++..
T Consensus       257 g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          257 GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             BSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            887777777778899999999999555 445667899999864

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.49  E-value=2.6e-12  Score=132.86  Aligned_cols=274  Identities=9%  Similarity=0.031  Sum_probs=186.3

Q ss_pred             CCCcEEEEecC-C----CcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEe----------CCCceEEEE
Q 005656           56 ANEPVLMSASA-D----NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG----------QDRAFRLFS  120 (685)
Q Consensus        56 p~~~~l~s~s~-D----~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s----------~dg~i~vwd  120 (685)
                      ++++.++.+.. +    ++|.+.|..+.    +.+..+..-..+  .+.++|||++++++.          .++.|.++|
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~----~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD  155 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTG----RILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFD  155 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTT----EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCC----EEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEE
Confidence            45565554433 3    68999998877    666665544444  899999999888876          367899999


Q ss_pred             eecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCC
Q 005656          121 VIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE  200 (685)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  200 (685)
                      ..+.+....+.....                                                        ..     ..
T Consensus       156 ~~t~~vv~~I~v~g~--------------------------------------------------------~r-----~~  174 (426)
T 3c75_H          156 PVTFLPIADIELPDA--------------------------------------------------------PR-----FL  174 (426)
T ss_dssp             TTTCCEEEEEEETTC--------------------------------------------------------CC-----CC
T ss_pred             CCCCcEEEEEECCCc--------------------------------------------------------cc-----cc
Confidence            988877665531100                                                        00     00


Q ss_pred             CCCCeEEEEEccCCCEEEEEec--CCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCC-CEEEEEECCCeEE
Q 005656          201 NPTAVKACTISACGNFAVLGTA--GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIK  277 (685)
Q Consensus       201 ~~~~v~~~~~s~~g~~l~~g~~--dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~  277 (685)
                      .......+.++|+|++++++..  ++.|.++|+.+++....+..       +.   .  ....|++ +.+++.+.||.+.
T Consensus       175 ~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v-------~g---~--~~~~p~g~~~~v~~~~dG~~~  242 (426)
T 3c75_H          175 VGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV-------PD---C--YHIFPASPTVFYMNCRDGSLA  242 (426)
T ss_dssp             BSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC-------CS---E--EEEEEEETTEEEEEETTSSEE
T ss_pred             cCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEc-------CC---c--eeeccCCCcEEEEEcCCCCEE
Confidence            0123446799999999999874  57899999999988777641       11   1  2223332 5566677788888


Q ss_pred             EEECCCCceEEE----eecC-Cc-eeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeE--EEEec----------CCCCeE
Q 005656          278 VWDFKGRDLKSR----WEVG-CS-LVKIVYHRVNGLLATVADDLVIRLFDVVALRMV--RKFEG----------HTDRIT  339 (685)
Q Consensus       278 iwd~~~~~~~~~----~~~~-~~-i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~--~~~~~----------h~~~I~  339 (685)
                      +.+..+++....    +... .+ ...+.+.+++..++.....+.+.+.|.......  ..+.-          ......
T Consensus       243 ~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~  322 (426)
T 3c75_H          243 RVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQ  322 (426)
T ss_dssp             EEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSS
T ss_pred             EEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCce
Confidence            888765554422    1111 11 123567888887777788899999998765422  11110          011122


Q ss_pred             EEEEcCCCCEEEEEeC----------CCcEEEEEcCCCceeeEEeeccceEEEEEcCCCC-eEEEEEeCCCeEEEEEcCC
Q 005656          340 DFCFSEDGKWLLSSGM----------DGSLRIWDVILARQIDAIHVDVSITALSLSPNMD-VLATAHVDQNGVYLWVNRC  408 (685)
Q Consensus       340 ~l~~spdg~~l~s~s~----------Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~-~Lat~~~d~~~I~lW~~~~  408 (685)
                      .++++||++.++.+..          ++.|.++|..+.+.+..+.......+++|+|||+ +++++....+.|.++|...
T Consensus       323 ~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t  402 (426)
T 3c75_H          323 QTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAAT  402 (426)
T ss_dssp             CEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTT
T ss_pred             eeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCC
Confidence            3689999987776542          3579999999999999999888899999999999 8988886556999999643

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.49  E-value=2.6e-12  Score=130.70  Aligned_cols=278  Identities=10%  Similarity=-0.054  Sum_probs=185.4

Q ss_pred             EEEEEeCCC----cEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEec----------CCCcEEEEEecCCCCCC
Q 005656           17 LLASGASSG----VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS----------ADNSIKMWIFDTTDGDP   82 (685)
Q Consensus        17 ~latg~~dg----~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s----------~D~~v~iWd~~~~~~~~   82 (685)
                      +.++...++    .|.++|..+++.+.++..+.. +  .+.++||+++++++.          .+++|.+||..+.    
T Consensus        34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~----  106 (368)
T 1mda_H           34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF----  106 (368)
T ss_dssp             EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC----
T ss_pred             EEEECCccCCccceEEEEECCCCeEEEEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC----
Confidence            445544455    788999999999999985554 4  799999999888775          3789999998887    


Q ss_pred             ceeEecccC-------CCCCeEEEEecCCCEEEEEeC--CCceEE--EEeecCceeeEechhhHHHHHhhcccccccccc
Q 005656           83 RLLRFRSGH-------SAPPLCIRFYANGRHILSAGQ--DRAFRL--FSVIQDQQSRELSQRHVAKRARKLKMKEEELKL  151 (685)
Q Consensus        83 ~~~~~~~~h-------~~~v~~i~~~~~~~~l~s~s~--dg~i~v--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (685)
                      +.+..+..+       ...+..+.|+|||++++++..  +..+.+  +|+.+   ...+..                   
T Consensus       107 ~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v-------------------  164 (368)
T 1mda_H          107 LPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKS-------------------  164 (368)
T ss_dssp             CEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEEC-------------------
T ss_pred             CEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEEC-------------------
Confidence            555554322       135788999999999998875  356888  88765   222210                   


Q ss_pred             CceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEE
Q 005656          152 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGGWIERFN  230 (685)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~~~d  230 (685)
                                                                      ...     ..+.|+| ..+++.+.+|.+.+.+
T Consensus       165 ------------------------------------------------~~~-----~~~~p~g~~~~~~~~~dg~~~~vd  191 (368)
T 1mda_H          165 ------------------------------------------------ASC-----FHIHPGAAATHYLGSCPASLAASD  191 (368)
T ss_dssp             ------------------------------------------------SSC-----CCCEEEETTEEECCCCTTSCEEEE
T ss_pred             ------------------------------------------------CCc-----eEEccCCCeEEEEEcCCCCEEEEE
Confidence                                                            000     0112222 2334445667777777


Q ss_pred             CCC-----CccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc--eEEEeecC----------
Q 005656          231 LQS-----GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD--LKSRWEVG----------  293 (685)
Q Consensus       231 ~~~-----~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~----------  293 (685)
                      +.+     ++......  .  .......+.   . .+++..++..+. +.+.+.|+.+..  ....+...          
T Consensus       192 ~~~~~~~~~~v~~~~t--~--~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~  262 (368)
T 1mda_H          192 LAAAPAAAGIVGAQCT--G--AQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFR  262 (368)
T ss_dssp             CCSSCCCCEECCCCSC--T--TSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEE
T ss_pred             CccccccCCeEEEEee--e--eeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccc
Confidence            765     33221100  0  000112233   3 566666666666 999999987542  23322211          


Q ss_pred             -CceeEEEEeecCCEEEEEeC---------CCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCC-EEEEEe-CCCcEEE
Q 005656          294 -CSLVKIVYHRVNGLLATVAD---------DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK-WLLSSG-MDGSLRI  361 (685)
Q Consensus       294 -~~i~~~~~~~~~~~l~~~~~---------dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~-~l~s~s-~Dg~I~i  361 (685)
                       .....++++|+++.++++..         ++.+.++|+.+++.+.++.... ....++|+|||+ .+++.. .+++|.+
T Consensus       263 p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsV  341 (368)
T 1mda_H          263 SAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDI  341 (368)
T ss_dssp             ECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEE
T ss_pred             cCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEE
Confidence             12223789999998877643         2356699999999998887443 588999999998 455666 5999999


Q ss_pred             EEcCCCceeeEEeeccceEEEEEcC
Q 005656          362 WDVILARQIDAIHVDVSITALSLSP  386 (685)
Q Consensus       362 wd~~~~~~i~~~~~~~~v~~v~~sp  386 (685)
                      +|+.+++.+..+........+++.+
T Consensus       342 ID~~t~kvv~~I~vg~~P~~i~~~~  366 (368)
T 1mda_H          342 YDAASDQDQSSVELDKGPESLSVQN  366 (368)
T ss_dssp             EESSSCEEEEECCCCSCCCEEECCC
T ss_pred             EECCCCcEEEEEECCCCCCEEEeec
Confidence            9999999999998887777777765

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.49  E-value=3e-11  Score=126.16  Aligned_cols=242  Identities=10%  Similarity=0.121  Sum_probs=163.6

Q ss_pred             cCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCC--ceEEEEeecC
Q 005656           47 NAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR--AFRLFSVIQD  124 (685)
Q Consensus        47 ~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg--~i~vwd~~~~  124 (685)
                      .....++|+++++++++...++.|++||.+.+    .+...... ..... ++|+++++.|+++..++  .|.+|+...+
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g----~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~  204 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDN----KVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASG  204 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTT----EEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGT
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCC----EEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCC
Confidence            35789999999998888888899999988764    33333222 33344 99999999999888766  5777765443


Q ss_pred             ceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCC
Q 005656          125 QQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTA  204 (685)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  204 (685)
                      .....+..                                                                ........
T Consensus       205 ~~~~~~g~----------------------------------------------------------------~~~~~~~~  220 (409)
T 3hrp_A          205 WAPTRIGQ----------------------------------------------------------------LGSTFSGK  220 (409)
T ss_dssp             TCEEEEEE----------------------------------------------------------------CCTTSCSC
T ss_pred             ceeEEeee----------------------------------------------------------------ccchhcCC
Confidence            32111100                                                                00012345


Q ss_pred             eEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCE--EEEEEcCC-CCEEEEEECCCeEEEEEC
Q 005656          205 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEV--VGVACDST-NTLMISAGYHGDIKVWDF  281 (685)
Q Consensus       205 v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v--~~l~~~~~-~~~l~s~s~dg~i~iwd~  281 (685)
                      +.+++++|++..++++..++.|+.||..++..... ...   ...++...-  ..++|+|+ +.++++...++.|+.|+.
T Consensus       221 p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~-~~~---~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~  296 (409)
T 3hrp_A          221 IGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLI-KQL---ELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITP  296 (409)
T ss_dssp             CCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEE-EEC---CCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred             cEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEE-ecc---cccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEec
Confidence            67889999666666677789999999987753221 000   001222222  39999995 555555567789999997


Q ss_pred             CCCceEEEeecC---------------CceeEEEEeecCCEEEEEe-CCCeEEEEEcCCCeeEEEEecC-----------
Q 005656          282 KGRDLKSRWEVG---------------CSLVKIVYHRVNGLLATVA-DDLVIRLFDVVALRMVRKFEGH-----------  334 (685)
Q Consensus       282 ~~~~~~~~~~~~---------------~~i~~~~~~~~~~~l~~~~-~dg~I~i~d~~~~~~~~~~~~h-----------  334 (685)
                      ... ........               .....++++++|+++++-. .++.|+.||+.++.. .++.++           
T Consensus       297 ~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~  374 (409)
T 3hrp_A          297 DGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVDVASQIDGTP  374 (409)
T ss_dssp             TCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCBST
T ss_pred             CCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCCh
Confidence            654 22222111               2478899999999777777 789999999888864 445544           


Q ss_pred             ----CCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005656          335 ----TDRITDFCFSEDGKWLLSSGMDGSLRIWDV  364 (685)
Q Consensus       335 ----~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~  364 (685)
                          -.....++++++|.++++-..++.|+.+++
T Consensus       375 ~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          375 LEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             TTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             hceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence                245889999999888888888888988775

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.48  E-value=2.4e-11  Score=121.33  Aligned_cols=189  Identities=11%  Similarity=0.126  Sum_probs=133.0

Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC---------
Q 005656          203 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH---------  273 (685)
Q Consensus       203 ~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d---------  273 (685)
                      ..+.+++++++|+++ ++. ++.|.+||..++........    ........+.+++++|+|+++++...+         
T Consensus        54 ~~~~~i~~~~dG~l~-v~~-~~~l~~~d~~~g~~~~~~~~----~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~  127 (297)
T 3g4e_A           54 APVSSVALRQSGGYV-ATI-GTKFCALNWKEQSAVVLATV----DNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLER  127 (297)
T ss_dssp             SCEEEEEEBTTSSEE-EEE-TTEEEEEETTTTEEEEEEEC----CTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCT
T ss_pred             CceEEEEECCCCCEE-EEE-CCeEEEEECCCCcEEEEEec----CCCCCCCCCCCEEECCCCCEEEecCCcccccccccC
Confidence            468899999999944 444 56799999988765432210    000123568899999999976654321         


Q ss_pred             CeEEEEECC-CCceEEEeecCCceeEEEEeecCCEEE-EEeCCCeEEEEEc--CCCee-----EEEEecCCCCeEEEEEc
Q 005656          274 GDIKVWDFK-GRDLKSRWEVGCSLVKIVYHRVNGLLA-TVADDLVIRLFDV--VALRM-----VRKFEGHTDRITDFCFS  344 (685)
Q Consensus       274 g~i~iwd~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~I~i~d~--~~~~~-----~~~~~~h~~~I~~l~~s  344 (685)
                      ..-.+|.+. .++.............++|+|+++.|+ +.+.++.|.+||+  .++..     +..+..+.+.+..++++
T Consensus       128 ~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d  207 (297)
T 3g4e_A          128 HQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCID  207 (297)
T ss_dssp             TCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEB
T ss_pred             CCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEEC
Confidence            223445444 234433333335568899999998665 4555789999997  45543     22333344678899999


Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCceeeEEeecc-ceEEEEEc-CCCCeEEEEEeC
Q 005656          345 EDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALSLS-PNMDVLATAHVD  397 (685)
Q Consensus       345 pdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~-~v~~v~~s-pdg~~Lat~~~d  397 (685)
                      ++|++.++....+.|..||..+|+.+..+..+. .+++++|+ |+++.|++++..
T Consensus       208 ~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~  262 (297)
T 3g4e_A          208 AEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCAR  262 (297)
T ss_dssp             TTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBC
T ss_pred             CCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCC
Confidence            999988887778889999999999999998774 59999998 898888877754

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.48  E-value=8.8e-12  Score=138.72  Aligned_cols=334  Identities=12%  Similarity=0.083  Sum_probs=204.7

Q ss_pred             EEEEEeCCCcEEEEeCCCCeeeEEeeccccc----------CeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeE
Q 005656           17 LLASGASSGVISIWNLEKRRLQSVIREAHDN----------AIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLR   86 (685)
Q Consensus        17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h~~----------~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~   86 (685)
                      .|++++.++.|.-+|..+|+.+.........          ....+++  ++..++.++.|+.|..+|..++    +.+.
T Consensus        79 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG----~~~W  152 (677)
T 1kb0_A           79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATG----KEVW  152 (677)
T ss_dssp             EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTC----CEEE
T ss_pred             EEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCC----CEEe
Confidence            4667777899999999999998877622110          0122333  3567888888999999998877    4443


Q ss_pred             ecccC-C----CCCeEEEEecCCCEEEEEeC------CCceEEEEeecCceeeEechhhHHHHHhhccccccccccCcee
Q 005656           87 FRSGH-S----APPLCIRFYANGRHILSAGQ------DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI  155 (685)
Q Consensus        87 ~~~~h-~----~~v~~i~~~~~~~~l~s~s~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (685)
                      ....+ .    ..+.+.-...++ .++.++.      +|.|+.||..+++....+.......             ..+..
T Consensus       153 ~~~~~~~~~~~~~~~~~p~v~~~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~-------------~~~~~  218 (677)
T 1kb0_A          153 HQNTFEGQKGSLTITGAPRVFKG-KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDP-------------SKPFE  218 (677)
T ss_dssp             EEETTTTCCSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCT-------------TSCCS
T ss_pred             eecCCcCcCcCcccccCcEEECC-EEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCc-------------ccccc
Confidence            33322 1    112111111234 5555543      6899999999998776653211000             00000


Q ss_pred             eeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCC-----------
Q 005656          156 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG-----------  224 (685)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg-----------  224 (685)
                      ... .......|                ...    +. .... .........++++++++.+++++.++           
T Consensus       219 ~~~-~~~g~~~w----------------~~~----g~-~~~~-~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~  275 (677)
T 1kb0_A          219 DES-MKRAARTW----------------DPS----GK-WWEA-GGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPK  275 (677)
T ss_dssp             SHH-HHHHHTTS----------------CGG----GC-HHHH-CEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTT
T ss_pred             ccc-cccccccc----------------ccc----Cc-eeEe-CCCcccccceeEcCCCCEEEEECCCCccccCCCCCcc
Confidence            000 00000000                000    00 0000 00111223567888888888887764           


Q ss_pred             --------cEEEEECCCCcccccccccccccc-CCCCcCEEEEEEcCCC---CEEEEEECCCeEEEEECCCCceEEEeec
Q 005656          225 --------WIERFNLQSGISRGSYLDMSERSN-YAHNGEVVGVACDSTN---TLMISAGYHGDIKVWDFKGRDLKSRWEV  292 (685)
Q Consensus       225 --------~i~~~d~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~~  292 (685)
                              .|..+|..+|+.+..+........ .........+....+|   ..++.++.+|.++++|..+++++.....
T Consensus       276 ~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~  355 (677)
T 1kb0_A          276 GGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNF  355 (677)
T ss_dssp             CCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEES
T ss_pred             CCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccc
Confidence                    499999999998877642110000 0001122223333466   6788899999999999999998876653


Q ss_pred             CC------------ce------------------------eEEEEeecCCEEEEEeCC----------------------
Q 005656          293 GC------------SL------------------------VKIVYHRVNGLLATVADD----------------------  314 (685)
Q Consensus       293 ~~------------~i------------------------~~~~~~~~~~~l~~~~~d----------------------  314 (685)
                      ..            ++                        ..++++|++.++++...+                      
T Consensus       356 ~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~  435 (677)
T 1kb0_A          356 VPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQ  435 (677)
T ss_dssp             SCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTT
T ss_pred             cccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccc
Confidence            21            01                        146889998888876432                      


Q ss_pred             ---------------------CeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEE
Q 005656          315 ---------------------LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI  373 (685)
Q Consensus       315 ---------------------g~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~  373 (685)
                                           |.|..||+.+++.+.++. +..++....++.++.+++.++.||.+++||..+|+.+..+
T Consensus       436 ~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~  514 (677)
T 1kb0_A          436 SGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEA  514 (677)
T ss_dssp             GGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeee
Confidence                                 789999999999988876 3344555667778889999999999999999999999999


Q ss_pred             eeccc--eEEEEEcCCCCeEEEE
Q 005656          374 HVDVS--ITALSLSPNMDVLATA  394 (685)
Q Consensus       374 ~~~~~--v~~v~~spdg~~Lat~  394 (685)
                      .....  ..-+.|.++|+..++.
T Consensus       515 ~~~~~~~~~p~~y~~~G~~~v~~  537 (677)
T 1kb0_A          515 PTGTGVVAAPSTYMVDGRQYVSV  537 (677)
T ss_dssp             ECSSCCCSCCEEEEETTEEEEEE
T ss_pred             eCCCCcccCCEEEEeCCEEEEEE
Confidence            87654  3456677888755444

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.48  E-value=1.6e-11  Score=128.26  Aligned_cols=236  Identities=12%  Similarity=0.038  Sum_probs=161.0

Q ss_pred             CCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEE
Q 005656           93 APPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVT  172 (685)
Q Consensus        93 ~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (685)
                      ..+..++|+++++.+++...++.|++||..++.......                                         
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~-----------------------------------------  169 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHP-----------------------------------------  169 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEE-----------------------------------------
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeec-----------------------------------------
Confidence            357899999999877776677899999987654432221                                         


Q ss_pred             EEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCC--cEEEEECCCCccccccccccccccCC
Q 005656          173 CHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG--WIERFNLQSGISRGSYLDMSERSNYA  250 (685)
Q Consensus       173 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg--~i~~~d~~~~~~~~~~~~~~~~~~~~  250 (685)
                                                 . ..... ++++++++.++++..++  .|++|+...+.....+..    ....
T Consensus       170 ---------------------------~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~----~~~~  216 (409)
T 3hrp_A          170 ---------------------------G-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQ----LGST  216 (409)
T ss_dssp             ---------------------------T-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEE----CCTT
T ss_pred             ---------------------------c-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeee----ccch
Confidence                                       1 11123 89999999999988866  799999876654322200    0002


Q ss_pred             CCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEE----eecCCc---eeEEEEeec-CCEEEEEeCCCeEEEEEc
Q 005656          251 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSR----WEVGCS---LVKIVYHRV-NGLLATVADDLVIRLFDV  322 (685)
Q Consensus       251 h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~----~~~~~~---i~~~~~~~~-~~~l~~~~~dg~I~i~d~  322 (685)
                      ....+.+++++|++..|+.+..++.|+.||..++.....    ......   ...++|+|+ +.++++-..++.|+.|+.
T Consensus       217 ~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~  296 (409)
T 3hrp_A          217 FSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITP  296 (409)
T ss_dssp             SCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred             hcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEec
Confidence            445678899999655566677788999999987764332    111111   239999995 556666667889999997


Q ss_pred             CCCeeEEEEecCC---------------CCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCceeeEEee-----------
Q 005656          323 VALRMVRKFEGHT---------------DRITDFCFSEDGKWLLSSG-MDGSLRIWDVILARQIDAIHV-----------  375 (685)
Q Consensus       323 ~~~~~~~~~~~h~---------------~~I~~l~~spdg~~l~s~s-~Dg~I~iwd~~~~~~i~~~~~-----------  375 (685)
                      ...  +..+.++.               .....++++|+|+++++-+ .++.|+.|++.++........           
T Consensus       297 ~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~  374 (409)
T 3hrp_A          297 DGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTP  374 (409)
T ss_dssp             TCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBST
T ss_pred             CCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCCh
Confidence            644  34444442               4588999999999777777 889999999888865433322           


Q ss_pred             ----ccceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656          376 ----DVSITALSLSPNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       376 ----~~~v~~v~~spdg~~Lat~~~d~~~I~lW~  405 (685)
                          -..+..++++|+|.++++-..+ +.|+.++
T Consensus       375 ~~~~~~~P~giavd~~g~lyVad~~n-~~Ir~i~  407 (409)
T 3hrp_A          375 LEATFNYPYDICYDGEGGYWIAEAWG-KAIRKYA  407 (409)
T ss_dssp             TTCCBSSEEEEEECSSSEEEEEESTT-CEEEEEE
T ss_pred             hceEeCCceEEEEcCCCCEEEEECCC-CeEEEEE
Confidence                1248999999997655555444 4787765

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.44  E-value=1.8e-10  Score=119.34  Aligned_cols=308  Identities=10%  Similarity=0.048  Sum_probs=190.2

Q ss_pred             EEEEEeCCCcEEEEeCCCCeeeEEeeccc--------ccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEec
Q 005656           17 LLASGASSGVISIWNLEKRRLQSVIREAH--------DNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFR   88 (685)
Q Consensus        17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h--------~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~   88 (685)
                      .+++++.+|.|..+|..+++.+.......        ...+.+.-. .++..++.++.++.|..+|..++    +.+...
T Consensus        55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~v~~~~g~l~a~d~~tG----~~~W~~  129 (376)
T 3q7m_A           55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVT-VSGGHVYIGSEKAQVYALNTSDG----TVAWQT  129 (376)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEE-EETTEEEEEETTSEEEEEETTTC----CEEEEE
T ss_pred             EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCce-EeCCEEEEEcCCCEEEEEECCCC----CEEEEE
Confidence            57777888999999999999887665221        222322222 23457777888899999988776    333322


Q ss_pred             ccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCc
Q 005656           89 SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC  168 (685)
Q Consensus        89 ~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (685)
                      .............  +..++.++.++.|..+|..+++..........                                 
T Consensus       130 ~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~---------------------------------  174 (376)
T 3q7m_A          130 KVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMP---------------------------------  174 (376)
T ss_dssp             ECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC----------------------------------
T ss_pred             eCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCC---------------------------------
Confidence            2222211222222  34788888899999999988876554421100                                 


Q ss_pred             ceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccccccccc
Q 005656          169 NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSN  248 (685)
Q Consensus       169 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~  248 (685)
                                               .. .......+    .+  .+..+++++.+|.+..+|..+|+....+........
T Consensus       175 -------------------------~~-~~~~~~~~----~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~  222 (376)
T 3q7m_A          175 -------------------------SL-SLRGESAP----TT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGS  222 (376)
T ss_dssp             ------------------------------CCCCCC----EE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC----
T ss_pred             -------------------------ce-eecCCCCc----EE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCC
Confidence                                     00 00000111    11  145788888999999999999988765532100000


Q ss_pred             CCCCcCEEEEEEcC--CCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCe
Q 005656          249 YAHNGEVVGVACDS--TNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALR  326 (685)
Q Consensus       249 ~~h~~~v~~l~~~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~  326 (685)
                       .....+..+...|  .+..++.++.++.+..+|..+++.+....... ...+.  .++..+++++.++.+..+|..+++
T Consensus       223 -~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~-~~~~~--~~~~~l~~~~~~g~l~~~d~~tG~  298 (376)
T 3q7m_A          223 -TEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGS-VNDFI--VDGNRIYLVDQNDRVMALTIDGGV  298 (376)
T ss_dssp             --------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCCC-EEEEE--EETTEEEEEETTCCEEEEETTTCC
T ss_pred             -cccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCCC-CCCce--EECCEEEEEcCCCeEEEEECCCCc
Confidence             0000000000011  24567778889999999999999887765443 33333  347788888899999999999999


Q ss_pred             eEEEEec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEee-ccceEE-EEEcCCCCeEEEEEeCCCeEEE
Q 005656          327 MVRKFEG-HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV-DVSITA-LSLSPNMDVLATAHVDQNGVYL  403 (685)
Q Consensus       327 ~~~~~~~-h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~-~~~v~~-v~~spdg~~Lat~~~d~~~I~l  403 (685)
                      .+..... ....+.....  .+..|+.++.+|.|+++|..+|+.+..+.. ...+.+ ...  .+..|++++.+| .|+.
T Consensus       299 ~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G-~l~~  373 (376)
T 3q7m_A          299 TLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDG-TVYS  373 (376)
T ss_dssp             EEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTS-CEEE
T ss_pred             EEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeCCC-EEEE
Confidence            8777652 2222333333  356788899999999999999999887776 333321 222  245677777776 7888


Q ss_pred             EE
Q 005656          404 WV  405 (685)
Q Consensus       404 W~  405 (685)
                      |+
T Consensus       374 ~~  375 (376)
T 3q7m_A          374 IT  375 (376)
T ss_dssp             EE
T ss_pred             Ee
Confidence            75

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.44  E-value=1.1e-10  Score=118.14  Aligned_cols=187  Identities=9%  Similarity=-0.046  Sum_probs=130.6

Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC------CCeE
Q 005656          203 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY------HGDI  276 (685)
Q Consensus       203 ~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~------dg~i  276 (685)
                      ..+.+++++++|+++++. .+ .|++||..++........    ........+.+++++|+|+++++...      .+.|
T Consensus        90 ~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~----~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l  163 (326)
T 2ghs_A           90 FMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAEL----ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSI  163 (326)
T ss_dssp             SCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECS----STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEE
T ss_pred             CcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeC----CCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEE
Confidence            458889999999876654 44 499999988875432110    00012346889999999997665542      2456


Q ss_pred             EEEECCCCceEEEeecCCceeEEEEeecCCEEEEE-eCCCeEEEEEcC--CC-e-----eEEEEecCCCCeEEEEEcCCC
Q 005656          277 KVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV-ADDLVIRLFDVV--AL-R-----MVRKFEGHTDRITDFCFSEDG  347 (685)
Q Consensus       277 ~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~I~i~d~~--~~-~-----~~~~~~~h~~~I~~l~~spdg  347 (685)
                      ..++  +++.............++|+|+++.++++ +.++.|.+||+.  ++ +     .+..+......+..++++++|
T Consensus       164 ~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G  241 (326)
T 2ghs_A          164 YHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG  241 (326)
T ss_dssp             EEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS
T ss_pred             EEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCC
Confidence            6666  45544333333456789999999876555 457899999986  55 3     223333344567899999999


Q ss_pred             CEEEEEeCCCcEEEEEcCCCceeeEEeeccc-eEEEEEc-CCCCeEEEEEeCC
Q 005656          348 KWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLS-PNMDVLATAHVDQ  398 (685)
Q Consensus       348 ~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~s-pdg~~Lat~~~d~  398 (685)
                      ++.++...++.|.+||. +++.+..+..+.. +++++|+ |+++.|++++..+
T Consensus       242 ~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          242 HIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE  293 (326)
T ss_dssp             CEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred             CEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence            98777767788999997 6788777776654 9999998 8988887776554

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.43  E-value=3e-11  Score=134.69  Aligned_cols=334  Identities=12%  Similarity=0.083  Sum_probs=202.9

Q ss_pred             EEEEEeCCCcEEEEeCCCCeeeEEeeccccc----------Ce-eEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCcee
Q 005656           17 LLASGASSGVISIWNLEKRRLQSVIREAHDN----------AI-ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL   85 (685)
Q Consensus        17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h~~----------~V-~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~   85 (685)
                      .|++++.++.|..+|..+|+.+..+. .+..          .+ ..+..  .+..++.++.|+.|..+|..++.    .+
T Consensus        72 ~vyv~~~~~~v~AlD~~tG~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~----~~  144 (689)
T 1yiq_A           72 VMYTTGPFSVVYALDARDGRLIWKYD-PQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQ----RA  144 (689)
T ss_dssp             EEEEECGGGCEEEEETTTCCEEEEEC-CCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCC----EE
T ss_pred             EEEEEcCCCeEEEEECCCCceeEEEc-CCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCC----Ee
Confidence            56777788999999999999988875 2211          01 11222  35578888889999999988773    33


Q ss_pred             Eeccc--CCCCCeEEEEec---CCCEEEEEe------CCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCce
Q 005656           86 RFRSG--HSAPPLCIRFYA---NGRHILSAG------QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV  154 (685)
Q Consensus        86 ~~~~~--h~~~v~~i~~~~---~~~~l~s~s------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (685)
                      -....  +......+..+|   ++ .++.++      .+|.|..||..+++....+......                +.
T Consensus       145 W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~----------------p~  207 (689)
T 1yiq_A          145 WSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGD----------------PK  207 (689)
T ss_dssp             EEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCC----------------TT
T ss_pred             eeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCC----------------cc
Confidence            22221  111111111112   44 444443      3689999999999877665321000                00


Q ss_pred             eeeeccc--ccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCc-------
Q 005656          155 IAFDCAE--IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGW-------  225 (685)
Q Consensus       155 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~-------  225 (685)
                      ..+....  .....|..           ..|...            .........++++|+++.+++++.++.       
T Consensus       208 ~~~~~~~~~~~~~~~~g-----------~~w~~~------------~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~  264 (689)
T 1yiq_A          208 LPPEGKGMEIAAKTWFG-----------DAYVEQ------------GGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWR  264 (689)
T ss_dssp             SCCCSHHHHHHHTTCCS-----------STHHHH------------CEECCCCSCEEEETTTTEEEEECCCEESSCHHHH
T ss_pred             cccccccccccccccCC-----------ceeeec------------CCCCccccceeEcCCCCEEEEeCCCCCccccCCC
Confidence            0000000  00000000           000000            001111235678888899999988764       


Q ss_pred             ------------EEEEECCCCccccccccccccc-cCCCCcCEEEEEEcCCCC---EEEEEECCCeEEEEECCCCceEEE
Q 005656          226 ------------IERFNLQSGISRGSYLDMSERS-NYAHNGEVVGVACDSTNT---LMISAGYHGDIKVWDFKGRDLKSR  289 (685)
Q Consensus       226 ------------i~~~d~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~---~l~s~s~dg~i~iwd~~~~~~~~~  289 (685)
                                  |..+|..+|+.+..+....... .......+.......+|+   .++.++.+|.++++|..+++++..
T Consensus       265 ~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~  344 (689)
T 1yiq_A          265 SQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSA  344 (689)
T ss_dssp             HTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred             CCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecc
Confidence                        9999999999887764211000 000112222222223454   688889999999999999998754


Q ss_pred             eecCC----------------------------------------ceeEEEEeecCCEEEEEeC----------------
Q 005656          290 WEVGC----------------------------------------SLVKIVYHRVNGLLATVAD----------------  313 (685)
Q Consensus       290 ~~~~~----------------------------------------~i~~~~~~~~~~~l~~~~~----------------  313 (685)
                      .....                                        .-..++++|+.+++++...                
T Consensus       345 ~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~  424 (689)
T 1yiq_A          345 KGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRN  424 (689)
T ss_dssp             EESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCC
T ss_pred             ccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccccccc
Confidence            32211                                        0112688998888877632                


Q ss_pred             -----------------------------CCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005656          314 -----------------------------DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV  364 (685)
Q Consensus       314 -----------------------------dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~  364 (685)
                                                   +|.|+.||+.+++.+.++..+. ++..-.++..+.+++.++.||.|+.||.
T Consensus       425 ~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~  503 (689)
T 1yiq_A          425 PFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAA  503 (689)
T ss_dssp             SCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred             ccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEEC
Confidence                                         3789999999999998887554 3333456667889999999999999999


Q ss_pred             CCCceeeEEeeccc--eEEEEEcCCCC-eEEEEEeCC
Q 005656          365 ILARQIDAIHVDVS--ITALSLSPNMD-VLATAHVDQ  398 (685)
Q Consensus       365 ~~~~~i~~~~~~~~--v~~v~~spdg~-~Lat~~~d~  398 (685)
                      .+|+.+..+..+..  ..-+.|+.+|+ |+++.+..+
T Consensus       504 ~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G~g  540 (689)
T 1yiq_A          504 DTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMAGWG  540 (689)
T ss_dssp             TTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCC
T ss_pred             CCCccceeeeCCCCcccCceEEEECCEEEEEEEecCC
Confidence            99999999987655  34577788887 555554444

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.43  E-value=5.2e-11  Score=118.93  Aligned_cols=228  Identities=10%  Similarity=0.065  Sum_probs=153.2

Q ss_pred             EEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCcee
Q 005656            6 TALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL   85 (685)
Q Consensus         6 ~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~   85 (685)
                      -+..|+|++..++++...++.|..||..+++.. .+  .+...+.+++++++|+++++.  ++.|.+||.+++.  .+.+
T Consensus        16 Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~--~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~--~~~~   88 (297)
T 3g4e_A           16 ESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV--TMDAPVSSVALRQSGGYVATI--GTKFCALNWKEQS--AVVL   88 (297)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE--ECSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTE--EEEE
T ss_pred             cCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE--eCCCceEEEEECCCCCEEEEE--CCeEEEEECCCCc--EEEE
Confidence            467899966547888888899999999887653 33  345789999999999966654  5678888876541  1222


Q ss_pred             Eeccc--CCCCCeEEEEecCCCEEEEEeCC---------CceEEEEeecCceeeEechhhHHHHHhhccccccccccCce
Q 005656           86 RFRSG--HSAPPLCIRFYANGRHILSAGQD---------RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV  154 (685)
Q Consensus        86 ~~~~~--h~~~v~~i~~~~~~~~l~s~s~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (685)
                      .....  ....+..+++.|+|+++++....         ..-.+|.+........+.                       
T Consensus        89 ~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~-----------------------  145 (297)
T 3g4e_A           89 ATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYF-----------------------  145 (297)
T ss_dssp             EECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEE-----------------------
T ss_pred             EecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEe-----------------------
Confidence            22111  12346789999999866654322         223455443221111000                       


Q ss_pred             eeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEE-EecCCcEEEEEC--
Q 005656          155 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL-GTAGGWIERFNL--  231 (685)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-g~~dg~i~~~d~--  231 (685)
                                                                   ........++|+|+++.+++ .+.++.|.+|++  
T Consensus       146 ---------------------------------------------~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~  180 (297)
T 3g4e_A          146 ---------------------------------------------DQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDL  180 (297)
T ss_dssp             ---------------------------------------------EEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECT
T ss_pred             ---------------------------------------------eccccccceEEcCCCCEEEEecCCCCcEEEEeccC
Confidence                                                         11233568999999997755 455789999987  


Q ss_pred             CCCccc--cccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEe-ecCCE
Q 005656          232 QSGISR--GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYH-RVNGL  307 (685)
Q Consensus       232 ~~~~~~--~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~-~~~~~  307 (685)
                      .++...  ..+.     ....+.+...+++++++|++.++...++.|..||..+++.+..+..+ ..+++++|. |+++.
T Consensus       181 ~~G~~~~~~~~~-----~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~  255 (297)
T 3g4e_A          181 QTGQISNRRSVY-----KLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSE  255 (297)
T ss_dssp             TTCCEEEEEEEE-----ECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCE
T ss_pred             CCCcccCcEEEE-----ECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCE
Confidence            455432  1111     11123456789999999987777777889999999989998888876 689999998 88887


Q ss_pred             EEEEeC
Q 005656          308 LATVAD  313 (685)
Q Consensus       308 l~~~~~  313 (685)
                      |++++.
T Consensus       256 L~vt~~  261 (297)
T 3g4e_A          256 MYVTCA  261 (297)
T ss_dssp             EEEEEB
T ss_pred             EEEEcC
Confidence            666654

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.43  E-value=1.2e-11  Score=139.05  Aligned_cols=242  Identities=14%  Similarity=0.107  Sum_probs=149.9

Q ss_pred             CcEEEEEEccCCCCEEEE-Ee----CCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCc--------
Q 005656            3 GAVTALAFSSDGQPLLAS-GA----SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNS--------   69 (685)
Q Consensus         3 ~~V~~l~fspdg~~~lat-g~----~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~--------   69 (685)
                      ..|..++|||||+ +||- .+    ....|++||+.+++.+....  +.....+++|+ |++.|+.++.+..        
T Consensus       129 ~~l~~~~~SpDg~-~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~--~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~  204 (693)
T 3iuj_A          129 TALDQLSFSRDGR-ILAYSLSLAGSDWREIHLMDVESKQPLETPL--KDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR  204 (693)
T ss_dssp             CEEEEEEECTTSS-EEEEEEECSSCCEEEEEEEETTTCSEEEEEE--EEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred             EEEEEEEECCCCC-EEEEEEecCCCceEEEEEEECCCCCCCcccc--CCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence            4588899999999 6663 22    23579999999998654422  22224678999 9998888877743        


Q ss_pred             -----EEEEEecCCCCCCceeEeccc-CCCCCeEEEEecCCCEEEEEeCC----CceEEEEeecCceeeEechhhHHHHH
Q 005656           70 -----IKMWIFDTTDGDPRLLRFRSG-HSAPPLCIRFYANGRHILSAGQD----RAFRLFSVIQDQQSRELSQRHVAKRA  139 (685)
Q Consensus        70 -----v~iWd~~~~~~~~~~~~~~~~-h~~~v~~i~~~~~~~~l~s~s~d----g~i~vwd~~~~~~~~~~~~~~~~~~~  139 (685)
                           |++|++.+......++..... |......+.|+|||++|+.....    +.|+++|+.++..             
T Consensus       205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~-------------  271 (693)
T 3iuj_A          205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA-------------  271 (693)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC-------------
T ss_pred             CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC-------------
Confidence                 888887765443345544444 55567889999999988654322    2455555432210             


Q ss_pred             hhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEE
Q 005656          140 RKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL  219 (685)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  219 (685)
                                                                                                      
T Consensus       272 --------------------------------------------------------------------------------  271 (693)
T 3iuj_A          272 --------------------------------------------------------------------------------  271 (693)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE-C---CCeEEEEECCCCce---EEEeec
Q 005656          220 GTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-Y---HGDIKVWDFKGRDL---KSRWEV  292 (685)
Q Consensus       220 g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~---dg~i~iwd~~~~~~---~~~~~~  292 (685)
                                     . ...+.        .+....... +++++..|+..+ .   .+.|..+|+.++..   .....+
T Consensus       272 ---------------~-~~~l~--------~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~  326 (693)
T 3iuj_A          272 ---------------P-LLTVQ--------GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE  326 (693)
T ss_dssp             ---------------C-CEEEE--------CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC
T ss_pred             ---------------c-eEEEe--------CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC
Confidence                           0 00000        122222222 344444443333 2   25788888877644   222333


Q ss_pred             CCceeEEEEeecCCEEEEEeCCC---eEEEEEcCCCeeEEEEe-cCCCCeEEEEEcCCCCEEEEEeCC----CcEEEEEc
Q 005656          293 GCSLVKIVYHRVNGLLATVADDL---VIRLFDVVALRMVRKFE-GHTDRITDFCFSEDGKWLLSSGMD----GSLRIWDV  364 (685)
Q Consensus       293 ~~~i~~~~~~~~~~~l~~~~~dg---~I~i~d~~~~~~~~~~~-~h~~~I~~l~~spdg~~l~s~s~D----g~I~iwd~  364 (685)
                      ...+.  .|+++++.|+....++   .|++||+..+. .+.+. .+.+.+..+.++++++.|+....+    ++|+.||+
T Consensus       327 ~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~  403 (693)
T 3iuj_A          327 RQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEP  403 (693)
T ss_dssp             CSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred             CCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEEC
Confidence            33343  8899999777665543   78999988554 44443 345567788888888866655444    78999999


Q ss_pred             CCCce
Q 005656          365 ILARQ  369 (685)
Q Consensus       365 ~~~~~  369 (685)
                      .+++.
T Consensus       404 ~~g~~  408 (693)
T 3iuj_A          404 KSGAI  408 (693)
T ss_dssp             TTCCE
T ss_pred             CCCeE
Confidence            88764

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.42  E-value=4.6e-11  Score=119.87  Aligned_cols=192  Identities=10%  Similarity=0.024  Sum_probs=133.1

Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEE----EEC------
Q 005656          203 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS----AGY------  272 (685)
Q Consensus       203 ~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s----~s~------  272 (685)
                      ..+..++++++|+.+++...++.|.+|+.. +........    ........+.+++++++|+++++    |..      
T Consensus        86 ~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~----~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~  160 (305)
T 3dr2_A           86 AFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGR----YAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGC  160 (305)
T ss_dssp             SCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECE----ETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSC
T ss_pred             CccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEec----cCCCccCCCCCEEECCCCCEEEeCcCCCcccccccc
Confidence            457889999999977666666889999986 543221110    00011234678999999998776    321      


Q ss_pred             -------CCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCC------CeEEEEEcCCCeeE--EEEe-cCCC
Q 005656          273 -------HGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD------LVIRLFDVVALRMV--RKFE-GHTD  336 (685)
Q Consensus       273 -------dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~I~i~d~~~~~~~--~~~~-~h~~  336 (685)
                             .+.|..||..+++..... .......++|+|+++.|+++...      +.|++|++..+...  +.+. ...+
T Consensus       161 ~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~  239 (305)
T 3dr2_A          161 PADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDG  239 (305)
T ss_dssp             CCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSS
T ss_pred             ccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCC
Confidence                   256888887777655443 33556789999999988777665      78999998765411  1221 1234


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656          337 RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       337 ~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~  405 (685)
                      .+..++++++|++.++ +.+| |.+|+. .++.+..+..+..+.+++|+|+++.|.+++.+  .++.++
T Consensus       240 ~pdgi~~d~~G~lwv~-~~~g-v~~~~~-~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~--~l~~~~  303 (305)
T 3dr2_A          240 LPDGFCVDRGGWLWSS-SGTG-VCVFDS-DGQLLGHIPTPGTASNCTFDQAQQRLFITGGP--CLWMLP  303 (305)
T ss_dssp             CCCSEEECTTSCEEEC-CSSE-EEEECT-TSCEEEEEECSSCCCEEEECTTSCEEEEEETT--EEEEEE
T ss_pred             CCCeEEECCCCCEEEe-cCCc-EEEECC-CCCEEEEEECCCceeEEEEeCCCCEEEEEcCC--eEEEEE
Confidence            4667899999995444 4454 999997 68888888877779999999999999888865  455443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.39  E-value=1.2e-11  Score=126.22  Aligned_cols=264  Identities=10%  Similarity=0.024  Sum_probs=170.2

Q ss_pred             cCeeEEEEeCCCcEEEEec--CCCcEEEEEecCCCCCCceeE------ecccCCCCCeEEEEecCCCEEEEEeC-----C
Q 005656           47 NAIISLHFFANEPVLMSAS--ADNSIKMWIFDTTDGDPRLLR------FRSGHSAPPLCIRFYANGRHILSAGQ-----D  113 (685)
Q Consensus        47 ~~V~~l~~sp~~~~l~s~s--~D~~v~iWd~~~~~~~~~~~~------~~~~h~~~v~~i~~~~~~~~l~s~s~-----d  113 (685)
                      ..+..++++|+|+++++..  .++.++||.++.+    +...      ...+|-..+.++++.++|+.+++-..     +
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g----~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~   92 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQD----GLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSV   92 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETT----EEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSC
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCC----CeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCC
Confidence            6789999999999998864  2344778887622    2221      11235568899999999875555433     5


Q ss_pred             CceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCce
Q 005656          114 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH  193 (685)
Q Consensus       114 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  193 (685)
                      +.|.+||+.+++....+...                                                     .      
T Consensus        93 ~~i~~~d~~tg~~~~~~~~~-----------------------------------------------------~------  113 (343)
T 2qe8_A           93 PKLVAWDTLNNQLSRVIYLP-----------------------------------------------------P------  113 (343)
T ss_dssp             CEEEEEETTTTEEEEEEECC-----------------------------------------------------T------
T ss_pred             CeEEEEECCCCeEEEEEECC-----------------------------------------------------h------
Confidence            78999998777654433210                                                     0      


Q ss_pred             eecCCCCCCCCeEEEEEccCCCEEEEEe----cCCcEEEEECCCCccccccccccccccCCCCcCEE-EEEEcCCCCEEE
Q 005656          194 ILRPCPENPTAVKACTISACGNFAVLGT----AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVV-GVACDSTNTLMI  268 (685)
Q Consensus       194 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~----~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~~~~~~l~  268 (685)
                         ........+..+++++++..++++.    .++.|.+||+.++.....+.        .|..... ...+.+++..+.
T Consensus       114 ---~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~--------~~~~~~~~~~~~~~~g~~~~  182 (343)
T 2qe8_A          114 ---PITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQ--------GYPGIAPEDIDLVIDGVPVQ  182 (343)
T ss_dssp             ---TTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECT--------TCTTTSCCSCCCEETTEECB
T ss_pred             ---hhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEec--------CCCcccccccceeECCEEEE
Confidence               0001224467889998665655543    57899999999887654432        2211100 023334666677


Q ss_pred             EEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCC-eEEEEEcCC---C-----eeEE--EEecCCCC
Q 005656          269 SAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDL-VIRLFDVVA---L-----RMVR--KFEGHTDR  337 (685)
Q Consensus       269 s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~I~i~d~~~---~-----~~~~--~~~~h~~~  337 (685)
                      +.+.+|.++.|.             ..+..++++|+++.|+++..++ .++.++...   +     +...  ...++.+.
T Consensus       183 ~~~~~g~~~~~~-------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~  249 (343)
T 2qe8_A          183 IGQPDGTVIRPH-------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPI  249 (343)
T ss_dssp             EECTTSCEECCC-------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCS
T ss_pred             eccCCCceecee-------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCC
Confidence            777788776664             2357799999999888877665 565555321   1     0000  12244556


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeec--cceEEEEEcCCCCeEEEEEeC
Q 005656          338 ITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVD--VSITALSLSPNMDVLATAHVD  397 (685)
Q Consensus       338 I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~--~~v~~v~~spdg~~Lat~~~d  397 (685)
                      ...++++++|+++++...++.|.+||..+++........  ..+++++|+++|.++++++..
T Consensus       250 pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~  311 (343)
T 2qe8_A          250 CDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQL  311 (343)
T ss_dssp             CSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCG
T ss_pred             CceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcc
Confidence            778999999999999888999999998567654443332  238999999998877776543

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.39  E-value=6.5e-12  Score=127.98  Aligned_cols=177  Identities=11%  Similarity=0.003  Sum_probs=132.5

Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccc-----cccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEE
Q 005656          203 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGS-----YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIK  277 (685)
Q Consensus       203 ~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~-----~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~  277 (685)
                      ..+..+++++....+++|+.++ +.+|++++......     +..   .....+.+ |+.++|  ++.+|+++ .++.|+
T Consensus        38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~---~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~  109 (388)
T 1xip_A           38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTF---KWEKEIPD-VIFVCF--HGDQVLVS-TRNALY  109 (388)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCC---SEEEECTT-EEEEEE--ETTEEEEE-ESSEEE
T ss_pred             ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccc---eEEeeCCC-eeEEEE--CCCEEEEE-cCCcEE
Confidence            3689999999999999999986 55698765431000     110   01114556 999999  88999988 889999


Q ss_pred             EEECCCCceEEEe-ecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q 005656          278 VWDFKGRDLKSRW-EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD  356 (685)
Q Consensus       278 iwd~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~D  356 (685)
                      +||+.+....... .+..++.++.+.+.  .+++++.||.+.+||+.++....    +...|++++|||+|  ++.|..|
T Consensus       110 v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~d  181 (388)
T 1xip_A          110 SLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKD  181 (388)
T ss_dssp             EEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETT
T ss_pred             EEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcC
Confidence            9999866543333 33456777666543  38889999999999999887653    44579999999999  7789999


Q ss_pred             CcEEEEEcCCCce--eeEE------e----eccceEEEEEcCCCCeEEEEE
Q 005656          357 GSLRIWDVILARQ--IDAI------H----VDVSITALSLSPNMDVLATAH  395 (685)
Q Consensus       357 g~I~iwd~~~~~~--i~~~------~----~~~~v~~v~~spdg~~Lat~~  395 (685)
                      |++++|+...+..  ...+      .    +...|.++.|.+++.++++=.
T Consensus       182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            9999998877775  5556      2    234499999999999988744

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.38  E-value=1.3e-11  Score=125.78  Aligned_cols=133  Identities=12%  Similarity=0.107  Sum_probs=109.4

Q ss_pred             CCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005656          202 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF  281 (685)
Q Consensus       202 ~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~  281 (685)
                      +. |+.++|  ++++++++ .+|.|++||+.+........        .|...+.++.+.+.+  +++++.||.|.+||+
T Consensus        88 p~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~--------~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl  153 (388)
T 1xip_A           88 PD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVT--------SFEKPVFQLKNVNNT--LVILNSVNDLSALDL  153 (388)
T ss_dssp             TT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEE--------ECSSCEEEEEECSSE--EEEEETTSEEEEEET
T ss_pred             CC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccc--------eeecceeeEEecCCC--EEEEECCCCEEEEEc
Confidence            45 999999  99999999 88999999998876433332        566778888776543  888999999999999


Q ss_pred             CCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCee--EEEE------e---cCCCCeEEEEEcCCCCEE
Q 005656          282 KGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM--VRKF------E---GHTDRITDFCFSEDGKWL  350 (685)
Q Consensus       282 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~--~~~~------~---~h~~~I~~l~~spdg~~l  350 (685)
                      .++....   ....+++++|+|+|  +++|..||++++|+...++.  .+++      .   +|...|.++.|.+++.++
T Consensus       154 ~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~fl  228 (388)
T 1xip_A          154 RTKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFL  228 (388)
T ss_dssp             TTCCEEE---EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEE
T ss_pred             cCCcccc---ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEE
Confidence            9877653   34689999999999  78899999999999988876  5666      2   478889999999999998


Q ss_pred             EEE
Q 005656          351 LSS  353 (685)
Q Consensus       351 ~s~  353 (685)
                      ++-
T Consensus       229 v~y  231 (388)
T 1xip_A          229 AVF  231 (388)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            864

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.37  E-value=3.4e-10  Score=115.30  Aligned_cols=139  Identities=16%  Similarity=0.145  Sum_probs=100.5

Q ss_pred             EEEEcCCCCEEEEEE-------------------CCCeEEEEECCCCceEEEeecC---CceeEEEE--eecCCEEEEEe
Q 005656          257 GVACDSTNTLMISAG-------------------YHGDIKVWDFKGRDLKSRWEVG---CSLVKIVY--HRVNGLLATVA  312 (685)
Q Consensus       257 ~l~~~~~~~~l~s~s-------------------~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~--~~~~~~l~~~~  312 (685)
                      .+-|+|+++.++++.                   .+.+|.+||+.+++.+.++..+   .....+.|  +|+++++++++
T Consensus       192 d~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~  271 (462)
T 2ece_A          192 DFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINM  271 (462)
T ss_dssp             CEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEE
T ss_pred             eEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEE
Confidence            456677777666664                   3689999999999888888875   34455655  99999888777


Q ss_pred             ------CCCeEEEEEcCCCee--EEEE--ecC----------------CCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcC
Q 005656          313 ------DDLVIRLFDVVALRM--VRKF--EGH----------------TDRITDFCFSEDGKWLLSSG-MDGSLRIWDVI  365 (685)
Q Consensus       313 ------~dg~I~i~d~~~~~~--~~~~--~~h----------------~~~I~~l~~spdg~~l~s~s-~Dg~I~iwd~~  365 (685)
                            .+++|.+|..+.++.  ...+  ...                ...+.+|.+||||++|.++. ..+.|.+||+.
T Consensus       272 e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          272 VVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             EEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred             eeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence                  456888776655422  1111  110                24578999999999998776 46889999986


Q ss_pred             C---CceeeEEeecc---------------ceEEEEEcCCCCeEEEEE
Q 005656          366 L---ARQIDAIHVDV---------------SITALSLSPNMDVLATAH  395 (685)
Q Consensus       366 ~---~~~i~~~~~~~---------------~v~~v~~spdg~~Lat~~  395 (685)
                      .   .+++..+...+               ....+++||||++|+++.
T Consensus       352 d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          352 NPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             STTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            3   35666665541               368899999999999998

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.36  E-value=5.1e-11  Score=121.68  Aligned_cols=264  Identities=13%  Similarity=0.066  Sum_probs=163.9

Q ss_pred             cEEEEEEccCCCCEEEEEe--CCCcEEEEeCCCCeeeEEee------cccccCeeEEEEeCCCcEEEEecC-----CCcE
Q 005656            4 AVTALAFSSDGQPLLASGA--SSGVISIWNLEKRRLQSVIR------EAHDNAIISLHFFANEPVLMSASA-----DNSI   70 (685)
Q Consensus         4 ~V~~l~fspdg~~~latg~--~dg~I~vwd~~~~~~~~~~~------~~h~~~V~~l~~sp~~~~l~s~s~-----D~~v   70 (685)
                      .++.++++|+|+ ++++..  .++.++||.+.+++.. .+.      .+|-..+.++++.++++++++-..     ++.|
T Consensus        18 ~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           18 APGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             CEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            578999999998 777753  2343555555456543 111      135578999999999987766543     5789


Q ss_pred             EEEEecCCCCCCceeEecc------cCCCCCeEEEEecCCCEE-EEEe---CCCceEEEEeecCceeeEechhhHHHHHh
Q 005656           71 KMWIFDTTDGDPRLLRFRS------GHSAPPLCIRFYANGRHI-LSAG---QDRAFRLFSVIQDQQSRELSQRHVAKRAR  140 (685)
Q Consensus        71 ~iWd~~~~~~~~~~~~~~~------~h~~~v~~i~~~~~~~~l-~s~s---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  140 (685)
                      .+||+.++    +.+..+.      .+...+..+++.+++..+ ++-.   .++.|.+||+.+++..+.+.....     
T Consensus        96 ~~~d~~tg----~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~-----  166 (343)
T 2qe8_A           96 VAWDTLNN----QLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPG-----  166 (343)
T ss_dssp             EEEETTTT----EEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTT-----
T ss_pred             EEEECCCC----eEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCc-----
Confidence            99988765    4333322      223457899999865454 4444   578899999877654433310000     


Q ss_pred             hccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEE
Q 005656          141 KLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG  220 (685)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g  220 (685)
                                                                                 .....   ..+.++|..+.+.
T Consensus       167 -----------------------------------------------------------~~~~~---~~~~~~g~~~~~~  184 (343)
T 2qe8_A          167 -----------------------------------------------------------IAPED---IDLVIDGVPVQIG  184 (343)
T ss_dssp             -----------------------------------------------------------TSCCS---CCCEETTEECBEE
T ss_pred             -----------------------------------------------------------ccccc---cceeECCEEEEec
Confidence                                                                       00000   1223345555555


Q ss_pred             ecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCC-eEEEEECC---CCc-----e---EE
Q 005656          221 TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG-DIKVWDFK---GRD-----L---KS  288 (685)
Q Consensus       221 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg-~i~iwd~~---~~~-----~---~~  288 (685)
                      ..+|.+..|.                      ..+.+++++|+++.|+++..++ .+..++..   .+.     .   +.
T Consensus       185 ~~~g~~~~~~----------------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  242 (343)
T 2qe8_A          185 QPDGTVIRPH----------------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIE  242 (343)
T ss_dssp             CTTSCEECCC----------------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCE
T ss_pred             cCCCceecee----------------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceE
Confidence            5555553331                      2357899999998888877665 45444421   111     0   01


Q ss_pred             EeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005656          289 RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG-HTDRITDFCFSEDGKWLLSSGMDGSLRIW  362 (685)
Q Consensus       289 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~-h~~~I~~l~~spdg~~l~s~s~Dg~I~iw  362 (685)
                      ..........++++++|.++++...++.|.+||..+++....... +...+++++|.++|+++++.+..+.+.+|
T Consensus       243 ~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f  317 (343)
T 2qe8_A          243 RYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPL  317 (343)
T ss_dssp             EEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred             ecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcccccccc
Confidence            111223456789999999999988899999999866764433332 24568999999999888887755555444

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.36  E-value=7.2e-10  Score=112.16  Aligned_cols=228  Identities=12%  Similarity=0.063  Sum_probs=148.9

Q ss_pred             EEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCce
Q 005656            5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRL   84 (685)
Q Consensus         5 V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~   84 (685)
                      ..+.+|+|++..+++++..++.|..||..+++... +.  +...+.+++|+++|+++++. . +.|.+||..++.  .+.
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~--~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~--~~~  123 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA--LPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGV--LTL  123 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE--CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCC--EEE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE--CCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCc--EEE
Confidence            35789999866577888788999999999886543 32  35679999999999887765 3 348888765542  122


Q ss_pred             eEeccc--CCCCCeEEEEecCCCEEEEEeCC----CceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeee
Q 005656           85 LRFRSG--HSAPPLCIRFYANGRHILSAGQD----RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD  158 (685)
Q Consensus        85 ~~~~~~--h~~~v~~i~~~~~~~~l~s~s~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (685)
                      +.....  ....+.+++++|+|+++++...+    +...+|.+.+++. ..+.                           
T Consensus       124 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~~-~~~~---------------------------  175 (326)
T 2ghs_A          124 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKV-TKLF---------------------------  175 (326)
T ss_dssp             EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEE-EEEE---------------------------
T ss_pred             EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCcE-EEee---------------------------
Confidence            221111  12357889999999876654322    2344554432211 1110                           


Q ss_pred             cccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEE-ecCCcEEEEECC--CC-
Q 005656          159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAGGWIERFNLQ--SG-  234 (685)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~dg~i~~~d~~--~~-  234 (685)
                                                               ........++|+|+|+.++++ +.++.|.+|++.  ++ 
T Consensus       176 -----------------------------------------~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl  214 (326)
T 2ghs_A          176 -----------------------------------------ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGL  214 (326)
T ss_dssp             -----------------------------------------EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCC
T ss_pred             -----------------------------------------CCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCC
Confidence                                                     011235688999999877665 456899999986  55 


Q ss_pred             ccc--cccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEe-ecCCEEEE
Q 005656          235 ISR--GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYH-RVNGLLAT  310 (685)
Q Consensus       235 ~~~--~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~-~~~~~l~~  310 (685)
                      ...  ..+.     ..........+++++++|.+.++...++.|..||. +++....+..+ ..+.+++|. ++++.|++
T Consensus       215 ~~~~~~~~~-----~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~v  288 (326)
T 2ghs_A          215 PTGKAEVFI-----DSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLV  288 (326)
T ss_dssp             BSSCCEEEE-----ECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEE
T ss_pred             cccCceEEE-----ECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEE
Confidence            321  1111     01123456788999999987777766789999998 56666666655 468999998 88886665


Q ss_pred             EeCC
Q 005656          311 VADD  314 (685)
Q Consensus       311 ~~~d  314 (685)
                      ++..
T Consensus       289 t~~~  292 (326)
T 2ghs_A          289 TSAR  292 (326)
T ss_dssp             EEBC
T ss_pred             EecC
Confidence            5543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.35  E-value=1.1e-10  Score=117.14  Aligned_cols=229  Identities=11%  Similarity=0.025  Sum_probs=148.7

Q ss_pred             cEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCc
Q 005656            4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPR   83 (685)
Q Consensus         4 ~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~   83 (685)
                      ......|+|+|+.+++++..++.|..|+. +++. ..+. .+...+.+++++++|+++++...++.|.+|+.+ +  ...
T Consensus        46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~-~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g--~~~  119 (305)
T 3dr2_A           46 WSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLL-DATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-G--QAH  119 (305)
T ss_dssp             SEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE-EEEE-ESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-S--CEE
T ss_pred             CccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEEe-CCCCccceeeECCCCCEEEEECCCCEEEEECCC-C--CEE
Confidence            35678999999867788888899999998 4443 3443 456778999999999987777667888888764 2  112


Q ss_pred             eeEe-ccc-CCCCCeEEEEecCCCEEEE----EeC-------------CCceEEEEeecCceeeEechhhHHHHHhhccc
Q 005656           84 LLRF-RSG-HSAPPLCIRFYANGRHILS----AGQ-------------DRAFRLFSVIQDQQSRELSQRHVAKRARKLKM  144 (685)
Q Consensus        84 ~~~~-~~~-h~~~v~~i~~~~~~~~l~s----~s~-------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  144 (685)
                      .+.. ..+ ....+..+++.++|+..++    +..             .+.|..||..+++....               
T Consensus       120 ~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~---------------  184 (305)
T 3dr2_A          120 LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRM---------------  184 (305)
T ss_dssp             EEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEE---------------
T ss_pred             EEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEE---------------
Confidence            2211 111 1245778999999987776    221             12233333222211000               


Q ss_pred             cccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecC-
Q 005656          145 KEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG-  223 (685)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d-  223 (685)
                                                                       .      .......++|+|+|+.++++... 
T Consensus       185 -------------------------------------------------~------~~~~p~gl~~spdg~~lyv~~~~~  209 (305)
T 3dr2_A          185 -------------------------------------------------A------DLDHPNGLAFSPDEQTLYVSQTPE  209 (305)
T ss_dssp             -------------------------------------------------E------EESSEEEEEECTTSSEEEEEECCC
T ss_pred             -------------------------------------------------e------cCCCCcceEEcCCCCEEEEEecCC
Confidence                                                             0      01235678999999988887765 


Q ss_pred             -----CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeE
Q 005656          224 -----GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVK  298 (685)
Q Consensus       224 -----g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~  298 (685)
                           +.|++|++..+.. .....    ......+...+++++++|++.+ ++.+ .|.+|+. .++.+..+..+..+.+
T Consensus       210 ~~~~~~~i~~~~~~~~~l-~~~~~----~~~~~~~~pdgi~~d~~G~lwv-~~~~-gv~~~~~-~g~~~~~~~~~~~~~~  281 (305)
T 3dr2_A          210 QGHGSVEITAFAWRDGAL-HDRRH----FASVPDGLPDGFCVDRGGWLWS-SSGT-GVCVFDS-DGQLLGHIPTPGTASN  281 (305)
T ss_dssp             ---CCCEEEEEEEETTEE-EEEEE----EECCSSSCCCSEEECTTSCEEE-CCSS-EEEEECT-TSCEEEEEECSSCCCE
T ss_pred             cCCCCCEEEEEEecCCCc-cCCeE----EEECCCCCCCeEEECCCCCEEE-ecCC-cEEEECC-CCCEEEEEECCCceeE
Confidence                 7899999876541 11000    0001234456789999998444 4444 5999998 5667777777667899


Q ss_pred             EEEeecCCEEEEEeCCCe
Q 005656          299 IVYHRVNGLLATVADDLV  316 (685)
Q Consensus       299 ~~~~~~~~~l~~~~~dg~  316 (685)
                      ++|.++++.|++++.++.
T Consensus       282 ~~f~~d~~~L~it~~~~l  299 (305)
T 3dr2_A          282 CTFDQAQQRLFITGGPCL  299 (305)
T ss_dssp             EEECTTSCEEEEEETTEE
T ss_pred             EEEeCCCCEEEEEcCCeE
Confidence            999999988888887643

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.35  E-value=3.1e-11  Score=122.51  Aligned_cols=296  Identities=8%  Similarity=0.037  Sum_probs=186.5

Q ss_pred             EEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeE
Q 005656            7 ALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLR   86 (685)
Q Consensus         7 ~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~   86 (685)
                      ++.+..+|.  +.+|+.++.|..|| .+++...... .+...+.++...+++. |..++.+  +..+|. .+    +.+.
T Consensus        24 ~~~~d~~g~--l~v~t~~~~l~~~d-~~g~~~~~~~-~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g----~~~~   91 (330)
T 3hxj_A           24 SPILAKNGT--IYLGSSNKNLYAIN-TDGSVKWFFK-SGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DG----TEKW   91 (330)
T ss_dssp             CCEECTTSC--EECSSTTTTTEEEC-TTSCEEESSC-GGGEEEECCEETTTTE-ECCSSCE--EEEECC-CG----GGGG
T ss_pred             CceEccCCe--EEEEcCCCEEEEEC-CCCcEEEEEe-cCCCcccceEEecCCc-EEEecCc--EEEECC-CC----cEEE
Confidence            344555665  66677788899999 8888766655 4455567777777775 4444444  666653 22    2222


Q ss_pred             ecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccC
Q 005656           87 FRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERD  166 (685)
Q Consensus        87 ~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (685)
                      .............+.  +..+..++.++.|..+|.. ++......                                   
T Consensus        92 ~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~-----------------------------------  133 (330)
T 3hxj_A           92 RFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFK-----------------------------------  133 (330)
T ss_dssp             GSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEE-----------------------------------
T ss_pred             EEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEc-----------------------------------
Confidence            222222222333333  4467778888888888875 44322221                                   


Q ss_pred             CcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccccccc
Q 005656          167 WCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSER  246 (685)
Q Consensus       167 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~  246 (685)
                                                       .....+.++...++|. +++|+.++.|..||.. +.....+.     
T Consensus       134 ---------------------------------~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~-----  173 (330)
T 3hxj_A          134 ---------------------------------TKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFK-----  173 (330)
T ss_dssp             ---------------------------------CSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEE-----
T ss_pred             ---------------------------------CCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEe-----
Confidence                                             0111233445555665 6778888999999998 76655443     


Q ss_pred             ccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCC
Q 005656          247 SNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL  325 (685)
Q Consensus       247 ~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~  325 (685)
                         .....+.++..++++..++ ++  +.|..+| .+++........ ..+.++...++|. +.+++.++.+..+|. ++
T Consensus       174 ---~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g  244 (330)
T 3hxj_A          174 ---TNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DG  244 (330)
T ss_dssp             ---CSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TS
T ss_pred             ---cCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CC
Confidence               2234566677777777544 44  8899999 777666655543 5577777777765 555677788888874 56


Q ss_pred             eeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEE
Q 005656          326 RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLW  404 (685)
Q Consensus       326 ~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW  404 (685)
                      +.+..+......+..+.+.+++. |..++.+|.|..+|. +++.+..+..... +.++..+++|.+ ..++.+| .+++.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l-~~gt~~G-~~~~~  320 (330)
T 3hxj_A          245 TEKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTI-YFGTRNG-KFYAL  320 (330)
T ss_dssp             CEEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCE-EEECTTS-CEEEE
T ss_pred             CEeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEE-EEEcCCC-eEEEE
Confidence            66666665555556667766664 666777888999995 7887777665444 777888788874 4466565 77776


Q ss_pred             E
Q 005656          405 V  405 (685)
Q Consensus       405 ~  405 (685)
                      .
T Consensus       321 ~  321 (330)
T 3hxj_A          321 F  321 (330)
T ss_dssp             E
T ss_pred             e
Confidence            4

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.33  E-value=8.3e-11  Score=132.09  Aligned_cols=192  Identities=8%  Similarity=0.043  Sum_probs=128.2

Q ss_pred             EEEEccCCCEEEEEecCC-------------cEEEEECCCCccccccccccccccCC-CCcCEEEEEEcCCCCEEEEEEC
Q 005656          207 ACTISACGNFAVLGTAGG-------------WIERFNLQSGISRGSYLDMSERSNYA-HNGEVVGVACDSTNTLMISAGY  272 (685)
Q Consensus       207 ~~~~s~~g~~l~~g~~dg-------------~i~~~d~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~l~s~s~  272 (685)
                      .++|+ ||+.|+.++.+.             .|++|++.++........    .... |...+.++.|+|+|++|+....
T Consensus       179 ~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~----~~~~~~~~~~~~~~~SpDg~~l~~~~~  253 (693)
T 3iuj_A          179 GISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVF----GAIPAQHHRYVGATVTEDDRFLLISAA  253 (693)
T ss_dssp             CCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEE----SCSGGGCCSEEEEEECTTSCEEEEEEE
T ss_pred             cEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEE----ecCCCCCeEEEEEEEcCCCCEEEEEEc
Confidence            56789 999888887764             399999987754322110    1113 4456789999999998765442


Q ss_pred             ----CCeEEEEECCCC--ceEEEeecCCceeEEEEeecCCEEEEEeC----CCeEEEEEcCCCee--EEEEecCCCCeEE
Q 005656          273 ----HGDIKVWDFKGR--DLKSRWEVGCSLVKIVYHRVNGLLATVAD----DLVIRLFDVVALRM--VRKFEGHTDRITD  340 (685)
Q Consensus       273 ----dg~i~iwd~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~I~i~d~~~~~~--~~~~~~h~~~I~~  340 (685)
                          +..|+++|+.++  ............... ++++|+.|+..+.    .+.|..+|+.++..  .+.+..|...+. 
T Consensus       254 ~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~-  331 (693)
T 3iuj_A          254 NSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL-  331 (693)
T ss_dssp             SSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE-
T ss_pred             cCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE-
Confidence                248999999876  333333333333333 6777775555443    36899999988754  355666776665 


Q ss_pred             EEEcCCCCEEEEEeCCC---cEEEEEcCCCceeeEEeec--cceEEEEEcCCCCeEEEEEeC---CCeEEEEEcC
Q 005656          341 FCFSEDGKWLLSSGMDG---SLRIWDVILARQIDAIHVD--VSITALSLSPNMDVLATAHVD---QNGVYLWVNR  407 (685)
Q Consensus       341 l~~spdg~~l~s~s~Dg---~I~iwd~~~~~~i~~~~~~--~~v~~v~~spdg~~Lat~~~d---~~~I~lW~~~  407 (685)
                       .|++++++|+....++   .|++|++..+ ....+..+  ..+..+.++|+++.|+....+   -..|+.|+..
T Consensus       332 -~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~  404 (693)
T 3iuj_A          332 -TVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPK  404 (693)
T ss_dssp             -EEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred             -EEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECC
Confidence             8999999888776443   6899998744 44555443  347888899999888777655   1378888753

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.33  E-value=2.6e-11  Score=127.86  Aligned_cols=271  Identities=10%  Similarity=0.073  Sum_probs=176.4

Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEE-e-CCCcEEEEec------------------CCCcEE
Q 005656           12 SDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHF-F-ANEPVLMSAS------------------ADNSIK   71 (685)
Q Consensus        12 pdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~-s-p~~~~l~s~s------------------~D~~v~   71 (685)
                      +||++++++...++.|.+.|+.+.++...+..........+++ + |++.++++++                  .++.+.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            4888555555567789999999999888655334456889998 5 9999998884                  245788


Q ss_pred             EEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCce-EEEEeecCceeeEechhhHHHHHhhccccccccc
Q 005656           72 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAF-RLFSVIQDQQSRELSQRHVAKRARKLKMKEEELK  150 (685)
Q Consensus        72 iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i-~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (685)
                      +.|.++.    +......--. ....++++|+|+++++++.+..- ...+..+....                       
T Consensus       179 vID~~t~----~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~-----------------------  230 (595)
T 1fwx_A          179 AVDADKW----EVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEM-----------------------  230 (595)
T ss_dssp             EEETTTT----EEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSE-----------------------
T ss_pred             EEECCCC----eEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhcccccc-----------------------
Confidence            8888765    5554443222 46778999999999998876421 00000000000                       


Q ss_pred             cCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEE
Q 005656          151 LKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFN  230 (685)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d  230 (685)
                                                 ..+.+.+.....                   .+.++|++...    +.|.+.|
T Consensus       231 ---------------------------d~v~V~~~~~~~-------------------~~v~~Gk~~~i----~~V~VID  260 (595)
T 1fwx_A          231 ---------------------------DHIVVFNIAEIE-------------------KAIAAGDYQEL----NGVKVVD  260 (595)
T ss_dssp             ---------------------------EEEEEEEHHHHH-------------------HHHHHTCSEEE----TTEEEEE
T ss_pred             ---------------------------ceEEEeecccee-------------------EeccCCCeeEE----CcEEEEe
Confidence                                       000111100000                   01122333332    4599999


Q ss_pred             CCC--Ccc-ccccccccccccCCCCcCEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCc------------eEEEeecCC
Q 005656          231 LQS--GIS-RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRD------------LKSRWEVGC  294 (685)
Q Consensus       231 ~~~--~~~-~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~------------~~~~~~~~~  294 (685)
                      ..+  +.. ...+.         -.....++.++|||+++++++ .+.+|.++|+.+.+            .......+.
T Consensus       261 ~~~~~~~~~~~~Ip---------vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~  331 (595)
T 1fwx_A          261 GRKEASSLFTRYIP---------IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGL  331 (595)
T ss_dssp             CSGGGCCSSEEEEE---------EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCS
T ss_pred             CcccCCceeEEEEe---------cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCC
Confidence            987  433 22221         123456899999999887766 67899999999653            456666678


Q ss_pred             ceeEEEEeecCCEEEEEeCCCeEEEEEcCC----------CeeEEEEecCCCCe-----EEEEEcCCCCEEEEEeC---C
Q 005656          295 SLVKIVYHRVNGLLATVADDLVIRLFDVVA----------LRMVRKFEGHTDRI-----TDFCFSEDGKWLLSSGM---D  356 (685)
Q Consensus       295 ~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~----------~~~~~~~~~h~~~I-----~~l~~spdg~~l~s~s~---D  356 (685)
                      ....++|+|+|....+..-|+.|.+||+.+          .+.+.++..|-.+-     .++.++|||+||+++..   |
T Consensus       332 gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skd  411 (595)
T 1fwx_A          332 GPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKD  411 (595)
T ss_dssp             CEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTT
T ss_pred             CcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcc
Confidence            899999999995555666799999999987          56788887765432     22356899999998853   4


Q ss_pred             Cc----------EEEEEcCCCce
Q 005656          357 GS----------LRIWDVILARQ  369 (685)
Q Consensus       357 g~----------I~iwd~~~~~~  369 (685)
                      +.          -.++|+..+++
T Consensus       412 r~~~~gp~~~~~~ql~dis~~~m  434 (595)
T 1fwx_A          412 RFLNVGPLKPENDQLIDISGDKM  434 (595)
T ss_dssp             SSCCCCSSCCEEEEEEECSSSSC
T ss_pred             ccccCCCCCCCcceEEEcCCCcE
Confidence            42          18899965553

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.33  E-value=3.4e-10  Score=126.25  Aligned_cols=146  Identities=9%  Similarity=0.035  Sum_probs=102.7

Q ss_pred             cCCC---EEEEEecCCcEEEEECCCCcccccccccccc------------------c--cCCCCc-----------CEEE
Q 005656          212 ACGN---FAVLGTAGGWIERFNLQSGISRGSYLDMSER------------------S--NYAHNG-----------EVVG  257 (685)
Q Consensus       212 ~~g~---~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~------------------~--~~~h~~-----------~v~~  257 (685)
                      .+|+   .+++++.+|.++++|..+|+.+.........                  .  ......           .-..
T Consensus       314 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~  393 (689)
T 1yiq_A          314 IDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQP  393 (689)
T ss_dssp             ETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSC
T ss_pred             cCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCc
Confidence            3565   7889999999999999999876332110000                  0  000000           1123


Q ss_pred             EEEcCCCCEEEEEEC---------------------------------------------CCeEEEEECCCCceEEEeec
Q 005656          258 VACDSTNTLMISAGY---------------------------------------------HGDIKVWDFKGRDLKSRWEV  292 (685)
Q Consensus       258 l~~~~~~~~l~s~s~---------------------------------------------dg~i~iwd~~~~~~~~~~~~  292 (685)
                      ++++|+..++++...                                             +|.|+.||+.+++.+..+..
T Consensus       394 ~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~  473 (689)
T 1yiq_A          394 MSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY  473 (689)
T ss_dssp             CEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE
T ss_pred             ceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccC
Confidence            788888887776532                                             37899999999999999888


Q ss_pred             CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCC-eEEEEEcCCCC-EEEEEeCCC
Q 005656          293 GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDR-ITDFCFSEDGK-WLLSSGMDG  357 (685)
Q Consensus       293 ~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~-I~~l~~spdg~-~l~s~s~Dg  357 (685)
                      +.+.....+...+.++++|+.|+.++.||.++|+.+.+++...+. .+-+.|+.||+ |+++.+..|
T Consensus       474 ~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G~g  540 (689)
T 1yiq_A          474 VTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMAGWG  540 (689)
T ss_dssp             SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCC
T ss_pred             CCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEecCC
Confidence            766665677778999999999999999999999999998754332 24467788887 455444433

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.30  E-value=9.3e-10  Score=122.41  Aligned_cols=145  Identities=10%  Similarity=0.045  Sum_probs=104.5

Q ss_pred             EEEccCC---CEEEEEecCCcEEEEECCCCccccccccccccc---cCCCCcC------------------------EEE
Q 005656          208 CTISACG---NFAVLGTAGGWIERFNLQSGISRGSYLDMSERS---NYAHNGE------------------------VVG  257 (685)
Q Consensus       208 ~~~s~~g---~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~---~~~h~~~------------------------v~~  257 (685)
                      +....+|   ..+++++.+|.++++|..+|+.+..+......-   .......                        -..
T Consensus       318 ~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~  397 (677)
T 1kb0_A          318 ADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHP  397 (677)
T ss_dssp             EEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSC
T ss_pred             EecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCC
Confidence            3444577   688999999999999999998876543111000   0000000                        025


Q ss_pred             EEEcCCCCEEEEEECC-------------------------------------------CeEEEEECCCCceEEEeecCC
Q 005656          258 VACDSTNTLMISAGYH-------------------------------------------GDIKVWDFKGRDLKSRWEVGC  294 (685)
Q Consensus       258 l~~~~~~~~l~s~s~d-------------------------------------------g~i~iwd~~~~~~~~~~~~~~  294 (685)
                      ++++|++.++++...+                                           |.|..||+.+++.+..+....
T Consensus       398 ~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~  477 (677)
T 1kb0_A          398 MSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS  477 (677)
T ss_dssp             CEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESS
T ss_pred             ceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCC
Confidence            7889988888775432                                           789999999999999988877


Q ss_pred             ceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCC-CCeEEEEEcCCCCEEEE
Q 005656          295 SLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT-DRITDFCFSEDGKWLLS  352 (685)
Q Consensus       295 ~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~-~~I~~l~~spdg~~l~s  352 (685)
                      +.....+...+.++++++.||.+++||..+++.+.++.... ...+-+.|+++|+.+++
T Consensus       478 ~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~  536 (677)
T 1kb0_A          478 PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS  536 (677)
T ss_dssp             SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             CCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence            66677778889999999999999999999999999997433 23344567788874443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.27  E-value=7.6e-11  Score=119.88  Aligned_cols=262  Identities=8%  Similarity=-0.059  Sum_probs=169.6

Q ss_pred             EEEEecCCC----cEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEe----------CCCceEEEEeecCc
Q 005656           60 VLMSASADN----SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG----------QDRAFRLFSVIQDQ  125 (685)
Q Consensus        60 ~l~s~s~D~----~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s----------~dg~i~vwd~~~~~  125 (685)
                      ..++...++    +|.+.|.++.    +.+..+.....+  .+.++||+++++++.          .++.|.+||+.+.+
T Consensus        34 ~yV~~~~~~~~~d~vsvID~~t~----~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~  107 (368)
T 1mda_H           34 SHITLPAYFAGTTENWVSCAGCG----VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL  107 (368)
T ss_dssp             EEEEECTTTCSSEEEEEEETTTT----EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC
T ss_pred             EEEECCccCCccceEEEEECCCC----eEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC
Confidence            455555555    7778887776    666665544455  799999999999886          36889999999988


Q ss_pred             eeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCe
Q 005656          126 QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAV  205 (685)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v  205 (685)
                      ....+..+..                                                        ...     ......
T Consensus       108 vv~~I~v~~~--------------------------------------------------------~~~-----~~g~~P  126 (368)
T 1mda_H          108 PIADIELPDA--------------------------------------------------------PRF-----SVGPRV  126 (368)
T ss_dssp             EEEEEEETTS--------------------------------------------------------CSC-----CBSCCT
T ss_pred             EEEEEECCCc--------------------------------------------------------ccc-----ccCCCc
Confidence            7776632100                                                        000     001234


Q ss_pred             EEEEEccCCCEEEEEec--CCcEEE--EECCCCccccccccccccccCCCCcCEEEEEEcCCC-CEEEEEECCCeEEEEE
Q 005656          206 KACTISACGNFAVLGTA--GGWIER--FNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWD  280 (685)
Q Consensus       206 ~~~~~s~~g~~l~~g~~--dg~i~~--~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd  280 (685)
                      ..++++|+|++++++..  +..+.+  +|+.+   ...+..       +..     +.+.|++ +.+++.+.||.+.+.|
T Consensus       127 ~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v-------~~~-----~~~~p~g~~~~~~~~~dg~~~~vd  191 (368)
T 1mda_H          127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKS-------ASC-----FHIHPGAAATHYLGSCPASLAASD  191 (368)
T ss_dssp             TSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEEC-------SSC-----CCCEEEETTEEECCCCTTSCEEEE
T ss_pred             ceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEEC-------CCc-----eEEccCCCeEEEEEcCCCCEEEEE
Confidence            57899999999999875  457888  88877   222210       110     1122333 3445556778887788


Q ss_pred             CCC-----CceEE----EeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCC--eeEEEEec-------CC---CCe
Q 005656          281 FKG-----RDLKS----RWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL--RMVRKFEG-------HT---DRI  338 (685)
Q Consensus       281 ~~~-----~~~~~----~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~--~~~~~~~~-------h~---~~I  338 (685)
                      +.+     ++...    .+..+ .+.   . .+++..++..+. +.+.+.|..+.  +.+..+.-       +.   ...
T Consensus       192 ~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~  266 (368)
T 1mda_H          192 LAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGF  266 (368)
T ss_dssp             CCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSS
T ss_pred             CccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcc
Confidence            776     33321    11112 233   3 666776666666 99999998754  23332221       00   111


Q ss_pred             EEEEEcCCCCEEEEEeC---------CCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEe-CCCeEEEEEcCC
Q 005656          339 TDFCFSEDGKWLLSSGM---------DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHV-DQNGVYLWVNRC  408 (685)
Q Consensus       339 ~~l~~spdg~~l~s~s~---------Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~-d~~~I~lW~~~~  408 (685)
                      ..++++||++.++.+..         ++.+.++|+.+++.+..+........++|+|||++++++.. ..+.|.++|...
T Consensus       267 ~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t  346 (368)
T 1mda_H          267 QMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS  346 (368)
T ss_dssp             SCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred             eeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence            22689999998876533         23566999999999999988888999999999997666665 345999999643

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.24  E-value=1.4e-13  Score=142.08  Aligned_cols=261  Identities=11%  Similarity=0.023  Sum_probs=145.4

Q ss_pred             CCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHH
Q 005656           57 NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVA  136 (685)
Q Consensus        57 ~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~  136 (685)
                      ++..+++++.|+.|..||..++    +.+.....  .++.+..+..++..+++++.||.|+.||..+++...........
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG----~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~   81 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTG----SIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE   81 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTC----CEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHH
T ss_pred             eCCEEEEEcCCCEEEEEECCCC----CEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcc
Confidence            4678999999999999998877    44444433  45655556677878888889999999999887764443211000


Q ss_pred             HHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCE
Q 005656          137 KRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNF  216 (685)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  216 (685)
                      .                                                              ....++    + ..+..
T Consensus        82 ~--------------------------------------------------------------~~~sp~----~-~~~~~   94 (369)
T 2hz6_A           82 L--------------------------------------------------------------VQASPC----R-SSDGI   94 (369)
T ss_dssp             H--------------------------------------------------------------HTTCSC----C------
T ss_pred             c--------------------------------------------------------------cccCce----E-ecCCE
Confidence            0                                                              000000    0 12456


Q ss_pred             EEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCce
Q 005656          217 AVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSL  296 (685)
Q Consensus       217 l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i  296 (685)
                      +++|+.+|.++.||..+|+....+.        .+.    ...++|++..+++++.|+.|+.||..+++.+..+.... .
T Consensus        95 v~~g~~dg~v~a~D~~tG~~~w~~~--------~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~-~  161 (369)
T 2hz6_A           95 LYMGKKQDIWYVIDLLTGEKQQTLS--------SAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD-Y  161 (369)
T ss_dssp             CCCCEEEEEEEEECCC----------------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE-E
T ss_pred             EEEEeCCCEEEEEECCCCcEEEEec--------CCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc-c
Confidence            7778889999999999998877653        221    13345678889999999999999999998776654321 1


Q ss_pred             eEEEEeecC---CEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeE-EEEEcCCCCEEEE--EeCCCcEEEEEcCCCc--
Q 005656          297 VKIVYHRVN---GLLATVADDLVIRLFDVVALRMVRKFEGHTDRIT-DFCFSEDGKWLLS--SGMDGSLRIWDVILAR--  368 (685)
Q Consensus       297 ~~~~~~~~~---~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~-~l~~spdg~~l~s--~s~Dg~I~iwd~~~~~--  368 (685)
                      ...++..+.   ..+++++.||.|+.||..+++.+..+.. ..++. ...++++|...+.  ...++.++.+|..+|+  
T Consensus       162 ~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg~~~v~~~~~~~~~l~~ld~~tG~~~  240 (369)
T 2hz6_A          162 AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQREGLRKVMHINVAVETLRYLTFMSGEVG  240 (369)
T ss_dssp             CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTTSSCEEECCEEEEHHHHHHHHHHHHHHH
T ss_pred             cCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-CCceEEEEEecCCceEeccceeecccceeeeehhcCCcc
Confidence            222333332   5677888999999999999998888773 34443 3455667753211  1114567777777776  


Q ss_pred             --eeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          369 --QIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       369 --~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                        .+..+.....+.+  ..-.+..|++++.+| .++.++..
T Consensus       241 ~~~~W~~~~~~~~~s--p~~~~g~lyv~~~~G-~l~al~~~  278 (369)
T 2hz6_A          241 RITKWKYPFPKETEA--KSKLTPTLYVGKYST-SLYASPSM  278 (369)
T ss_dssp             HHHTSCCCCCCHHHH--HHHSEEEECBEECSS-CEECCEEE
T ss_pred             cceeeeeccCccccc--cccccceEEEecccC-CEEecCcc
Confidence              5444443332210  001345677777776 78877643

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.23  E-value=9.2e-08  Score=109.25  Aligned_cols=324  Identities=9%  Similarity=0.076  Sum_probs=205.0

Q ss_pred             EEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCce
Q 005656            5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRL   84 (685)
Q Consensus         5 V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~   84 (685)
                      |.++...++|. +.+ |+.++.|..||..+++........+...|.++...+++.+.+.. .++-+..|+....    +.
T Consensus       175 i~~i~~d~~g~-lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt-~~~Gl~~~~~~~~----~~  247 (795)
T 4a2l_A          175 IASTLYRQGDQ-IYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVAT-EGAGLFLINPKTK----EI  247 (795)
T ss_dssp             CEEEEEEETTE-EEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEE-BSSCEEEEETTTT----EE
T ss_pred             eEEEEECCCCC-EEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEE-CCCCeEEEeCCCC----eE
Confidence            78888888887 444 56554599999887765443222345678999988888766544 3334777876543    22


Q ss_pred             eEeccc-------CCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeee
Q 005656           85 LRFRSG-------HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF  157 (685)
Q Consensus        85 ~~~~~~-------h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (685)
                      ......       ....|.++...++|... .|+.+ -|.+|+..++.........                        
T Consensus       248 ~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~~~~~~~~~~~~~------------------------  301 (795)
T 4a2l_A          248 KNYLHSPSNPKSISSNYIRSLAMDSQNRLW-IGTFN-DLNIYHEGTDSFASYSSNP------------------------  301 (795)
T ss_dssp             EEECCCTTCTTSCSCSBEEEEEECTTSCEE-EEESS-CEEEEETTTTEEEEECCCT------------------------
T ss_pred             EEeecCCCCccccCCCeEEEEEEcCCCCEE-EEeCC-hhheEcCCCCeEEEEecCC------------------------
Confidence            222111       23568888888777644 45555 5888886554322111000                        


Q ss_pred             ecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccc
Q 005656          158 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR  237 (685)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~  237 (685)
                                                           ..........|.++...++|+ +.+|+.++-|..|+..++...
T Consensus       302 -------------------------------------~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~  343 (795)
T 4a2l_A          302 -------------------------------------VENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFK  343 (795)
T ss_dssp             -------------------------------------TSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSE
T ss_pred             -------------------------------------CCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccce
Confidence                                                 000002245689999998887 566777777999987665432


Q ss_pred             cccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEee---------cCCceeEEEEeecCCEE
Q 005656          238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE---------VGCSLVKIVYHRVNGLL  308 (685)
Q Consensus       238 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---------~~~~i~~~~~~~~~~~l  308 (685)
                      ..... .. ...-....|.++..+++|. |..|+.++-|..||..++.......         ....|.++...+++++|
T Consensus       344 ~~~~~-~~-~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~l  420 (795)
T 4a2l_A          344 NIRNI-PY-KNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLV  420 (795)
T ss_dssp             EECCC-TT-SSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEE
T ss_pred             EEcCC-CC-CCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEE
Confidence            21110 00 0011345799999998887 5557777789999988776543321         12568888888888867


Q ss_pred             EEEeCCCeEEEEEcCCCeeEEEEe----cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEee-------cc
Q 005656          309 ATVADDLVIRLFDVVALRMVRKFE----GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV-------DV  377 (685)
Q Consensus       309 ~~~~~dg~I~i~d~~~~~~~~~~~----~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~-------~~  377 (685)
                      .+|+.++-|..||..+++......    .+...|.++...++|++.+.. .+ -|.+||..+++.......       ..
T Consensus       421 Wigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~  498 (795)
T 4a2l_A          421 YIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQRSFTTIEKEKDGTPVVSK  498 (795)
T ss_dssp             EEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTTEEEECCBCTTCCBCCCC
T ss_pred             EEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCCeEEEccccccccccCCc
Confidence            778887889999998876433221    134579999999888855544 34 488999887654332211       23


Q ss_pred             ceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          378 SITALSLSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       378 ~v~~v~~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                      .|.++...++|.+.+.+.  + +|+.|+..
T Consensus       499 ~i~~i~~d~~g~lWigt~--~-Gl~~~~~~  525 (795)
T 4a2l_A          499 QITTLFRDSHKRLWIGGE--E-GLSVFKQE  525 (795)
T ss_dssp             CEEEEEECTTCCEEEEES--S-CEEEEEEE
T ss_pred             eEEEEEECCCCCEEEEeC--C-ceEEEeCC
Confidence            489999999998766654  3 68888753

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.21  E-value=1.5e-09  Score=114.59  Aligned_cols=281  Identities=13%  Similarity=0.086  Sum_probs=184.2

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeeeEEee---------------------cc-----------c------ccCeeEEEEeC-
Q 005656           16 PLLASGASSGVISIWNLEKRRLQSVIR---------------------EA-----------H------DNAIISLHFFA-   56 (685)
Q Consensus        16 ~~latg~~dg~I~vwd~~~~~~~~~~~---------------------~~-----------h------~~~V~~l~~sp-   56 (685)
                      +.+.+|+..|.++|+-+.+++.+..+.                     .+           +      .+.......|. 
T Consensus        16 ~~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t   95 (595)
T 1fwx_A           16 YGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFT   95 (595)
T ss_dssp             EEEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEE
T ss_pred             EEEeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCC
Confidence            356688999999999999988777654                     10           1      12233455665 


Q ss_pred             ----CCcEEEEecC-CCcEEEEEecCCCCCCceeEecc-cCCCCCeEEEE-e-cCCCEEEEEeCC---------------
Q 005656           57 ----NEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRS-GHSAPPLCIRF-Y-ANGRHILSAGQD---------------  113 (685)
Q Consensus        57 ----~~~~l~s~s~-D~~v~iWd~~~~~~~~~~~~~~~-~h~~~v~~i~~-~-~~~~~l~s~s~d---------------  113 (685)
                          ||++++.+.. ++.|.+-|+++.    ++...+. .....+..+++ . |++++++.++..               
T Consensus        96 ~g~~DG~~lfVnd~~~~rVavIdl~t~----~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~  171 (595)
T 1fwx_A           96 EGKYDGRFLFMNDKANTRVARVRCDVM----KCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVA  171 (595)
T ss_dssp             TTEEEEEEEEEEETTTTEEEEEETTTT----EEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG
T ss_pred             CCCcCCCEEEEEcCCCCEEEEEECCCc----eEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCccccccc
Confidence                7887766655 556888888876    5444221 22345788888 4 899999888632               


Q ss_pred             ---CceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCcccc
Q 005656          114 ---RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVL  190 (685)
Q Consensus       114 ---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~  190 (685)
                         +.+.++|..+.+....+.                                                           
T Consensus       172 ~~~~~vtvID~~t~~v~~qI~-----------------------------------------------------------  192 (595)
T 1fwx_A          172 NYVNVFTAVDADKWEVAWQVL-----------------------------------------------------------  192 (595)
T ss_dssp             GEEEEEEEEETTTTEEEEEEE-----------------------------------------------------------
T ss_pred             ccCceEEEEECCCCeEEEEEE-----------------------------------------------------------
Confidence               234444443332222221                                                           


Q ss_pred             CceeecCCCCCCCCeEEEEEccCCCEEEEEecCC---------------cEEEEECCCCccccccccccccccCCCCcCE
Q 005656          191 GEHILRPCPENPTAVKACTISACGNFAVLGTAGG---------------WIERFNLQSGISRGSYLDMSERSNYAHNGEV  255 (685)
Q Consensus       191 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg---------------~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v  255 (685)
                           .     ......++++|+|+++++.+.+.               .|.++|......                   
T Consensus       193 -----V-----gg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~-------------------  243 (595)
T 1fwx_A          193 -----V-----SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK-------------------  243 (595)
T ss_dssp             -----E-----SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH-------------------
T ss_pred             -----e-----CCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeE-------------------
Confidence                 1     11234577999999999988664               234443222111                   


Q ss_pred             EEEEEcCCCCEEEEEECCCeEEEEECCC--Cce-EEEeecCCceeEEEEeecCCEEEEEe-CCCeEEEEEcCCCe-----
Q 005656          256 VGVACDSTNTLMISAGYHGDIKVWDFKG--RDL-KSRWEVGCSLVKIVYHRVNGLLATVA-DDLVIRLFDVVALR-----  326 (685)
Q Consensus       256 ~~l~~~~~~~~l~s~s~dg~i~iwd~~~--~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~I~i~d~~~~~-----  326 (685)
                          +.++|++...    +.|.+.|..+  ++. ...+..+....++.++|||+++++++ .+.+|.++|+.+.+     
T Consensus       244 ----~v~~Gk~~~i----~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~  315 (595)
T 1fwx_A          244 ----AIAAGDYQEL----NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYE  315 (595)
T ss_dssp             ----HHHHTCSEEE----TTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHS
T ss_pred             ----eccCCCeeEE----CcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccccc
Confidence                1223443332    5599999998  555 67777777888999999999776665 57899999999763     


Q ss_pred             -------eEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC----------CceeeEEeeccceE------EEE
Q 005656          327 -------MVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL----------ARQIDAIHVDVSIT------ALS  383 (685)
Q Consensus       327 -------~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~----------~~~i~~~~~~~~v~------~v~  383 (685)
                             .+.... -......++|+|||...++.-.|++|.+||+.+          ...+..+..+..+-      .+.
T Consensus       316 ~l~~~~~v~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t  394 (595)
T 1fwx_A          316 NADPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGET  394 (595)
T ss_dssp             CCCGGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTS
T ss_pred             ccCcccceEEEcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceE
Confidence                   344443 234578899999994444566899999999987          56677777665542      224


Q ss_pred             EcCCCCeEEEEEeC
Q 005656          384 LSPNMDVLATAHVD  397 (685)
Q Consensus       384 ~spdg~~Lat~~~d  397 (685)
                      ++|||++|+++..-
T Consensus       395 ~~~DGk~l~~~Nk~  408 (595)
T 1fwx_A          395 LDATNDWLVCLSKF  408 (595)
T ss_dssp             TTCCSSEEEEEESC
T ss_pred             eCCCCCEEEEcCCC
Confidence            58999999999653

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.17  E-value=1.4e-08  Score=105.08  Aligned_cols=263  Identities=11%  Similarity=0.023  Sum_probs=165.1

Q ss_pred             EEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCC-
Q 005656           17 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP-   95 (685)
Q Consensus        17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v-   95 (685)
                      .+++++.+|.|..+|..+++...... ............  +..++.++.++.|..+|..++    +.+.......... 
T Consensus       105 ~v~v~~~~g~l~a~d~~tG~~~W~~~-~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG----~~~W~~~~~~~~~~  177 (376)
T 3q7m_A          105 HVYIGSEKAQVYALNTSDGTVAWQTK-VAGEALSRPVVS--DGLVLIHTSNGQLQALNEADG----AVKWTVNLDMPSLS  177 (376)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEE-CSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTC----CEEEEEECCC----
T ss_pred             EEEEEcCCCEEEEEECCCCCEEEEEe-CCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCC----cEEEEEeCCCCcee
Confidence            57778889999999999999887765 222222222222  347777888999999988766    3332222211110 


Q ss_pred             ----eEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceE
Q 005656           96 ----LCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVV  171 (685)
Q Consensus        96 ----~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (685)
                          ......  +..++.++.++.+..+|..+++..............                                
T Consensus       178 ~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~--------------------------------  223 (376)
T 3q7m_A          178 LRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGST--------------------------------  223 (376)
T ss_dssp             -CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-------------------------------------
T ss_pred             ecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCc--------------------------------
Confidence                111222  346788888999999999888765444211000000                                


Q ss_pred             EEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCC
Q 005656          172 TCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAH  251 (685)
Q Consensus       172 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h  251 (685)
                               .+         ...   ......++    +  .+..+++++.+|.+..+|..+|+......          
T Consensus       224 ---------~~---------~~~---~~~~~~p~----~--~~~~v~~~~~~g~l~~~d~~tG~~~w~~~----------  266 (376)
T 3q7m_A          224 ---------EI---------DRL---SDVDTTPV----V--VNGVVFALAYNGNLTALDLRSGQIMWKRE----------  266 (376)
T ss_dssp             ---------------------------CCCCCCE----E--ETTEEEEECTTSCEEEEETTTCCEEEEEC----------
T ss_pred             ---------cc---------ccc---cccCCCcE----E--ECCEEEEEecCcEEEEEECCCCcEEeecc----------
Confidence                     00         000   00001111    1  25678888889999999999998776542          


Q ss_pred             CcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec-C-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEE
Q 005656          252 NGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV-G-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR  329 (685)
Q Consensus       252 ~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~  329 (685)
                      ......+...  +..++.++.++.|..+|..+++.+..... . ........  .+..|++++.+|.++++|..+++.+.
T Consensus       267 ~~~~~~~~~~--~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~  342 (376)
T 3q7m_A          267 LGSVNDFIVD--GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVA  342 (376)
T ss_dssp             CCCEEEEEEE--TTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCCCCCceEE--CCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEE
Confidence            1223444443  56788888899999999999998877652 2 22222222  36788899999999999999999988


Q ss_pred             EEecCCCCeEE-EEEcCCCCEEEEEeCCCcEEEEE
Q 005656          330 KFEGHTDRITD-FCFSEDGKWLLSSGMDGSLRIWD  363 (685)
Q Consensus       330 ~~~~h~~~I~~-l~~spdg~~l~s~s~Dg~I~iwd  363 (685)
                      .+......+.. ...  .+..|+.++.+|.|+.|+
T Consensus       343 ~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          343 QQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             EEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred             EEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence            87754443332 222  245788889999999987

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.17  E-value=9.9e-12  Score=128.07  Aligned_cols=167  Identities=7%  Similarity=-0.069  Sum_probs=91.3

Q ss_pred             ccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEe
Q 005656          211 SACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRW  290 (685)
Q Consensus       211 s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  290 (685)
                      ..++..+++++.+|.|+.||..+|+....+.......  ....++    +. .+..+++++.|+.|+.||..+|+.+..+
T Consensus        46 ~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~--~~~sp~----~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~  118 (369)
T 2hz6_A           46 HVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPEL--VQASPC----RS-SDGILYMGKKQDIWYVIDLLTGEKQQTL  118 (369)
T ss_dssp             ----CCEEECTTTCCEEEC-----CCSEECSCCHHHH--HTTCSC----C------CCCCEEEEEEEEECCC--------
T ss_pred             EcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccc--cccCce----Ee-cCCEEEEEeCCCEEEEEECCCCcEEEEe
Confidence            3556677778899999999999987755442100000  001111    11 2446777888999999999999988777


Q ss_pred             ecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCC---CEEEEEeCCCcEEEEEcCCC
Q 005656          291 EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDG---KWLLSSGMDGSLRIWDVILA  367 (685)
Q Consensus       291 ~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg---~~l~s~s~Dg~I~iwd~~~~  367 (685)
                      ..+..   ..++|++..+++++.|+.|+.||..+++.+..+..+.  ....+++++.   ..+++++.||.|+.||..+|
T Consensus       119 ~~~~~---~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG  193 (369)
T 2hz6_A          119 SSAFA---DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG  193 (369)
T ss_dssp             -----------------EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC
T ss_pred             cCCCc---ccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCC
Confidence            65542   3456788899999999999999999998766654221  1223344432   45777889999999999999


Q ss_pred             ceeeEEeeccceE-EEEEcCCCC
Q 005656          368 RQIDAIHVDVSIT-ALSLSPNMD  389 (685)
Q Consensus       368 ~~i~~~~~~~~v~-~v~~spdg~  389 (685)
                      +.+..+....++. ...++++|.
T Consensus       194 ~~~W~~~~~~pv~~~~~~~~dg~  216 (369)
T 2hz6_A          194 DVLWIQNYASPVVAFYVWQREGL  216 (369)
T ss_dssp             CEEEEEECSSCEEEEEECTTSSC
T ss_pred             cEEEEecCCCceEEEEEecCCce
Confidence            9988887777744 445666664

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.17  E-value=1.2e-08  Score=97.81  Aligned_cols=193  Identities=7%  Similarity=-0.044  Sum_probs=143.9

Q ss_pred             CeEEEEEccCCCEEEEEec---CCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE-CCCeEEEE
Q 005656          204 AVKACTISACGNFAVLGTA---GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVW  279 (685)
Q Consensus       204 ~v~~~~~s~~g~~l~~g~~---dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iw  279 (685)
                      ....+.+++++ .+++++.   ++.|.++|+.+++....+..       +......+++++  +..++.+. .++.+.++
T Consensus        22 f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l-------~~~~fgeGi~~~--g~~lyv~t~~~~~v~vi   91 (266)
T 2iwa_A           22 FTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKM-------DDSYFGEGLTLL--NEKLYQVVWLKNIGFIY   91 (266)
T ss_dssp             CEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEEC-------CTTCCEEEEEEE--TTEEEEEETTCSEEEEE
T ss_pred             CcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEec-------CCCcceEEEEEe--CCEEEEEEecCCEEEEE
Confidence            46789999986 5555543   57999999999998877531       112223356665  44555444 67899999


Q ss_pred             ECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCC-----CCeEEEEEcCCCCEEEEEe
Q 005656          280 DFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT-----DRITDFCFSEDGKWLLSSG  354 (685)
Q Consensus       280 d~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~-----~~I~~l~~spdg~~l~s~s  354 (685)
                      |..+.+.+.++..+ .-....++++|+.++++..++.|.++|..+.+.++.+.-..     ..++.+.|. +|+..+...
T Consensus        92 D~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~  169 (266)
T 2iwa_A           92 DRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIW  169 (266)
T ss_dssp             ETTTTEEEEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred             ECCCCcEEEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecC
Confidence            99999999988765 12234567788877777788999999999999888876321     247788888 776555555


Q ss_pred             CCCcEEEEEcCCCceeeEEeec--------------cceEEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656          355 MDGSLRIWDVILARQIDAIHVD--------------VSITALSLSPNMDVLATAHVDQNGVYLWVNRC  408 (685)
Q Consensus       355 ~Dg~I~iwd~~~~~~i~~~~~~--------------~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~  408 (685)
                      .++.|.+.|..+++.+..+...              .....++|+|+++.|++++...+.|+.-+...
T Consensus       170 ~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          170 QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence            6789999999999999999764              13689999999998888887767888876543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.15  E-value=1e-08  Score=114.02  Aligned_cols=335  Identities=10%  Similarity=0.060  Sum_probs=195.8

Q ss_pred             EEEEEeCCCcEEEEeCCCCeeeEEeeccccc---------Ce-eEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeE
Q 005656           17 LLASGASSGVISIWNLEKRRLQSVIREAHDN---------AI-ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLR   86 (685)
Q Consensus        17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h~~---------~V-~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~   86 (685)
                      .|++++.++.|.-+|..+|+.+.........         .+ ..+++  .+..++.++.|+.|..+|..++.    .+-
T Consensus        68 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~----~~W  141 (668)
T 1kv9_A           68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGK----AIW  141 (668)
T ss_dssp             EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCC----EEE
T ss_pred             EEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCC----Eee
Confidence            5667777899999999999998877521110         00 12233  24577788889999999888773    332


Q ss_pred             ecccC-C---CCCeEEEEecCCCEEEEEeC------CCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceee
Q 005656           87 FRSGH-S---APPLCIRFYANGRHILSAGQ------DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA  156 (685)
Q Consensus        87 ~~~~h-~---~~v~~i~~~~~~~~l~s~s~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (685)
                      ..... .   ..+.+.-...++ .++.+..      +|.|..+|..+++....+.......        ........+ .
T Consensus       142 ~~~~~~~~~~~~~~~~P~v~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p--------~~~~~~~~~-~  211 (668)
T 1kv9_A          142 SQQTTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDP--------ALPYEHPEL-R  211 (668)
T ss_dssp             EEECSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCT--------TSCCSSHHH-H
T ss_pred             eeccCCCCCcceecCCCEEECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCC--------Ccccccccc-c
Confidence            22211 0   111110001134 4555443      5899999999998876653210000        000000000 0


Q ss_pred             eecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCC------------
Q 005656          157 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG------------  224 (685)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg------------  224 (685)
                      .     ....|..          -.+|..             .........+++.+.++.+++++.++            
T Consensus       212 ~-----~~~~~~g----------~~~w~~-------------~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~  263 (668)
T 1kv9_A          212 E-----AAKTWQG----------DQYWKL-------------GGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGG  263 (668)
T ss_dssp             H-----HHTTCCS----------SCHHHH-------------CEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTC
T ss_pred             c-----ccccCCc----------cceeee-------------CCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCC
Confidence            0     0000000          000000             00111223567888888888888776            


Q ss_pred             -------cEEEEECCCCcccccccccccccc-CCCCcCEEEEEEcCCCC---EEEEEECCCeEEEEECCCCceEEEeecC
Q 005656          225 -------WIERFNLQSGISRGSYLDMSERSN-YAHNGEVVGVACDSTNT---LMISAGYHGDIKVWDFKGRDLKSRWEVG  293 (685)
Q Consensus       225 -------~i~~~d~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~---~l~s~s~dg~i~iwd~~~~~~~~~~~~~  293 (685)
                             .|..+|..+|+.+..+........ .....+.....+..+|+   .++.++.+|.++++|..+|+++......
T Consensus       264 gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~  343 (668)
T 1kv9_A          264 GDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFG  343 (668)
T ss_dssp             CCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESS
T ss_pred             CCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccc
Confidence                   399999999998877642110000 00112333233333554   6888899999999999999987443221


Q ss_pred             C-------------ce------------------------eEEEEeecCCEEEEEe------------------------
Q 005656          294 C-------------SL------------------------VKIVYHRVNGLLATVA------------------------  312 (685)
Q Consensus       294 ~-------------~i------------------------~~~~~~~~~~~l~~~~------------------------  312 (685)
                      .             ++                        ..++++|+..++++..                        
T Consensus       344 ~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~  423 (668)
T 1kv9_A          344 KVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAA  423 (668)
T ss_dssp             CCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSS
T ss_pred             ccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCc
Confidence            1             00                        1267888877666521                        


Q ss_pred             ------------CCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccce-
Q 005656          313 ------------DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSI-  379 (685)
Q Consensus       313 ------------~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v-  379 (685)
                                  .+|.|..||+.+++.+.+...+. ++....+...+.+++.++.||.|+.||..+|+.+..+.....+ 
T Consensus       424 ~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~  502 (668)
T 1kv9_A          424 GFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIV  502 (668)
T ss_dssp             CGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred             cccccCCCCCCCccceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcc
Confidence                        23789999999999988776433 3333445557788999999999999999999999998876542 


Q ss_pred             -EEEEEcCCCC-eEEEEEe
Q 005656          380 -TALSLSPNMD-VLATAHV  396 (685)
Q Consensus       380 -~~v~~spdg~-~Lat~~~  396 (685)
                       .-+.+..+|+ |+++++.
T Consensus       503 ~~p~~~~~~G~~yva~~~G  521 (668)
T 1kv9_A          503 AAPMTFELAGRQYVAIMAG  521 (668)
T ss_dssp             SCCEEEEETTEEEEEEEEC
T ss_pred             cCceEEEECCEEEEEEEec
Confidence             3344556776 6666654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.15  E-value=1.2e-07  Score=92.71  Aligned_cols=248  Identities=13%  Similarity=0.056  Sum_probs=153.5

Q ss_pred             EEEEEeCCCcEEEEeCCCCeee-----EEeecccccCeeEEEEeCCCc-EEEEecCCCcEEEEEecCCCCCCceeEeccc
Q 005656           17 LLASGASSGVISIWNLEKRRLQ-----SVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSG   90 (685)
Q Consensus        17 ~latg~~dg~I~vwd~~~~~~~-----~~~~~~h~~~V~~l~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~   90 (685)
                      +|..+. .+.|+.+++......     ..+. .....+.+++|++++. +.++...++.|..++.+...    .......
T Consensus         3 ~l~~~~-~~~I~~~~~~g~~~~~~~~~~~~~-~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~----~~~~~~~   76 (267)
T 1npe_A            3 HLLFAQ-TGKIERLPLERNTMKKTEAKAFLH-IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE----PTTIIRQ   76 (267)
T ss_dssp             EEEEEE-EEEEEEEEESSSCBCGGGCEEEEE-EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC----CEEEECT
T ss_pred             EEEEEc-CCeEEEEEecCcccccccceeeec-CCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC----cEEEEEC
Confidence            344444 357999998765431     1222 2234678999999655 55555567889999876542    1222222


Q ss_pred             CCCCCeEEEEecCCCEEEEEe-CCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcc
Q 005656           91 HSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCN  169 (685)
Q Consensus        91 h~~~v~~i~~~~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (685)
                      ....+..+++.+++..|+.+. ..+.|.+++...... ..+.                                      
T Consensus        77 ~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~~--------------------------------------  117 (267)
T 1npe_A           77 DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVLF--------------------------------------  117 (267)
T ss_dssp             TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE--------------------------------------
T ss_pred             CCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE-EEEE--------------------------------------
Confidence            234678999999766555554 456787777643211 1100                                      


Q ss_pred             eEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec---CCcEEEEECCCCcccccccccccc
Q 005656          170 VVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA---GGWIERFNLQSGISRGSYLDMSER  246 (685)
Q Consensus       170 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~---dg~i~~~d~~~~~~~~~~~~~~~~  246 (685)
                                                .   ........++++|++..++++..   .+.|..+++.... ...+..    
T Consensus       118 --------------------------~---~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~----  163 (267)
T 1npe_A          118 --------------------------D---TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQ----  163 (267)
T ss_dssp             --------------------------C---SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEEC----
T ss_pred             --------------------------E---CCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEE----
Confidence                                      0   11234678999997776666654   4688888876432 222110    


Q ss_pred             ccCCCCcCEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEE-eCCCeEEEEEcCC
Q 005656          247 SNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV-ADDLVIRLFDVVA  324 (685)
Q Consensus       247 ~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~I~i~d~~~  324 (685)
                         ..-....++++++++..|+.+. ..+.|..+|..+...............++..  +..++++ ..++.|.++|..+
T Consensus       164 ---~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~  238 (267)
T 1npe_A          164 ---DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAI  238 (267)
T ss_dssp             ---TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTT
T ss_pred             ---CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCeEEEEeCCC
Confidence               1224578999999877665554 5689999999865544443333334556553  4545444 4568999999999


Q ss_pred             CeeEEEEecCC-CCeEEEEEcCCCC
Q 005656          325 LRMVRKFEGHT-DRITDFCFSEDGK  348 (685)
Q Consensus       325 ~~~~~~~~~h~-~~I~~l~~spdg~  348 (685)
                      ++.+..+.... .....+++.|++.
T Consensus       239 g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          239 SKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             TEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             CCceEEEccccccccceeeecCccC
Confidence            99988886433 3477888888864

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.14  E-value=4.8e-07  Score=103.34  Aligned_cols=324  Identities=10%  Similarity=0.103  Sum_probs=204.9

Q ss_pred             CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeec------ccccCeeEEEEeCCCcEEEEecCCCcEEEEEec
Q 005656            3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIRE------AHDNAIISLHFFANEPVLMSASADNSIKMWIFD   76 (685)
Q Consensus         3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~------~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~   76 (685)
                      ..|.++...++|. +. .|+.++-|.+||..+++.......      -....|.++...++|.+.+.. .+ -|.+|+..
T Consensus       215 ~~i~~i~~d~~g~-lw-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt-~~-Gl~~~~~~  290 (795)
T 4a2l_A          215 KQIQAILQQSPTR-IW-VATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGT-FN-DLNIYHEG  290 (795)
T ss_dssp             CCEEEEEEEETTE-EE-EEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEE-SS-CEEEEETT
T ss_pred             CeeEEEEEcCCCC-EE-EEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEe-CC-hhheEcCC
Confidence            4588888888887 44 444444499999888765543321      113569999999888765544 34 57888765


Q ss_pred             CCCCCCceeEecc-------cCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccccccc
Q 005656           77 TTDGDPRLLRFRS-------GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEEL  149 (685)
Q Consensus        77 ~~~~~~~~~~~~~-------~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (685)
                      ..    .......       -....|.++...++|. |..|+.++-|..|+..+..... +...                
T Consensus       291 ~~----~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~~----------------  348 (795)
T 4a2l_A          291 TD----SFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKN-IRNI----------------  348 (795)
T ss_dssp             TT----EEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEE-ECCC----------------
T ss_pred             CC----eEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceE-EcCC----------------
Confidence            43    2222211       1235688888888875 5567777778888765443211 1000                


Q ss_pred             ccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEE
Q 005656          150 KLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERF  229 (685)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~  229 (685)
                                                           .        .........|.+++..++|+ +.+|+.++-|..|
T Consensus       349 -------------------------------------~--------~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~  382 (795)
T 4a2l_A          349 -------------------------------------P--------YKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLY  382 (795)
T ss_dssp             -------------------------------------T--------TSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEE
T ss_pred             -------------------------------------C--------CCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEE
Confidence                                                 0        00001245688999888876 5668888779999


Q ss_pred             ECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEee-----cCCceeEEEEeec
Q 005656          230 NLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE-----VGCSLVKIVYHRV  304 (685)
Q Consensus       230 d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-----~~~~i~~~~~~~~  304 (685)
                      +..++...............-....|.++..+++++.|..|+.++.|..||..+++......     ....|.++...++
T Consensus       383 ~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~  462 (795)
T 4a2l_A          383 NPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGE  462 (795)
T ss_dssp             CTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSS
T ss_pred             cCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCC
Confidence            98877543322100000000124679999999888856777777889999998876544321     1356888888887


Q ss_pred             CCEEEEEeCCCeEEEEEcCCCeeEEEEec------CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEe----
Q 005656          305 NGLLATVADDLVIRLFDVVALRMVRKFEG------HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH----  374 (685)
Q Consensus       305 ~~~l~~~~~dg~I~i~d~~~~~~~~~~~~------h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~----  374 (685)
                      |.+.+. +. +.+.+||..+++.......      +...|.++...++|++.+... . -|..||..+++.  .+.    
T Consensus       463 g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~~~~--~~~~~~~  536 (795)
T 4a2l_A          463 GNLWLG-TL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E-GLSVFKQEGLDI--QKASILP  536 (795)
T ss_dssp             SCEEEE-ES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S-CEEEEEEETTEE--EECCCSC
T ss_pred             CCEEEE-ec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-C-ceEEEeCCCCeE--EEecCCC
Confidence            775544 44 4588999888765432211      235799999999998666544 4 588899877665  232    


Q ss_pred             ----eccceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          375 ----VDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       375 ----~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                          ....|.++..+++|.+.+++.  + +|+.|+..
T Consensus       537 ~~~l~~~~i~~i~~d~~g~lWigT~--~-Gl~~~d~~  570 (795)
T 4a2l_A          537 VSNVTKLFTNCIYEASNGIIWVGTR--E-GFYCFNEK  570 (795)
T ss_dssp             SCGGGGSCEEEEEECTTSCEEEEES--S-CEEEEETT
T ss_pred             CCCCCCCeeEEEEECCCCCEEEEeC--C-CceeECCC
Confidence                122389999999998666553  3 68888754

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.14  E-value=9.3e-09  Score=104.79  Aligned_cols=230  Identities=11%  Similarity=0.089  Sum_probs=149.7

Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCC----eeeEEee------cccccCeeEEEEeCCCcEEEEecCC------CcEEEEEe
Q 005656           12 SDGQPLLASGASSGVISIWNLEKR----RLQSVIR------EAHDNAIISLHFFANEPVLMSASAD------NSIKMWIF   75 (685)
Q Consensus        12 pdg~~~latg~~dg~I~vwd~~~~----~~~~~~~------~~h~~~V~~l~~sp~~~~l~s~s~D------~~v~iWd~   75 (685)
                      +++++++++|..++.|.|+|+.+.    +...++.      ..-...-..+..+|+| +++++..+      |.|.+.|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            888867777888999999999765    6666662      0011245677889999 77776655      78989887


Q ss_pred             cCCCCCCceeEecccCC---CCCeEEEEecCCCEEEEEe-------------------CCCceEEEEeecCceeeEechh
Q 005656           76 DTTDGDPRLLRFRSGHS---APPLCIRFYANGRHILSAG-------------------QDRAFRLFSVIQDQQSRELSQR  133 (685)
Q Consensus        76 ~~~~~~~~~~~~~~~h~---~~v~~i~~~~~~~~l~s~s-------------------~dg~i~vwd~~~~~~~~~~~~~  133 (685)
                      .+.    +++.......   .-...+.|+|+++.+++..                   .+.+|.+||+.+++....+..+
T Consensus       172 ~T~----~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg  247 (462)
T 2ece_A          172 YSF----EPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLG  247 (462)
T ss_dssp             TTC----CEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESC
T ss_pred             CCC----eEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecC
Confidence            766    5555554221   2234588899999888874                   3678889988776544443210


Q ss_pred             hHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEE--c
Q 005656          134 HVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTI--S  211 (685)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~--s  211 (685)
                                                                                        ........+.|  +
T Consensus       248 ------------------------------------------------------------------~~g~~P~~i~f~~~  261 (462)
T 2ece_A          248 ------------------------------------------------------------------EENRMALELRPLHD  261 (462)
T ss_dssp             ------------------------------------------------------------------TTEEEEEEEEECSS
T ss_pred             ------------------------------------------------------------------CCCCccceeEeeEC
Confidence                                                                              01122344444  9


Q ss_pred             cCCCEEEEEec------CCcEEEEECCCCccccccc-ccccccc-----------CCCCcCEEEEEEcCCCCEEEEEE-C
Q 005656          212 ACGNFAVLGTA------GGWIERFNLQSGISRGSYL-DMSERSN-----------YAHNGEVVGVACDSTNTLMISAG-Y  272 (685)
Q Consensus       212 ~~g~~l~~g~~------dg~i~~~d~~~~~~~~~~~-~~~~~~~-----------~~h~~~v~~l~~~~~~~~l~s~s-~  272 (685)
                      |+|+++++++.      ++.|.+|....+....... .......           .+-......|.++++|++|.++. .
T Consensus       262 Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg  341 (462)
T 2ece_A          262 PTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWG  341 (462)
T ss_dssp             TTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETT
T ss_pred             CCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCC
Confidence            99999988885      5678776654432211100 0000000           00024578899999999988777 4


Q ss_pred             CCeEEEEECCC---CceEEEeecCC---------------ceeEEEEeecCCEEEEEe
Q 005656          273 HGDIKVWDFKG---RDLKSRWEVGC---------------SLVKIVYHRVNGLLATVA  312 (685)
Q Consensus       273 dg~i~iwd~~~---~~~~~~~~~~~---------------~i~~~~~~~~~~~l~~~~  312 (685)
                      .+.|.+||+..   .+++..+..++               ....+.++|+|++|+++.
T Consensus       342 ~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          342 IGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             TTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            68999999862   35555555542               358899999999999887

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.11  E-value=1.5e-08  Score=110.30  Aligned_cols=333  Identities=11%  Similarity=0.031  Sum_probs=188.2

Q ss_pred             EEEEEeC-CCcEEEEeC-CCCeeeEEeecccccCe----------eEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCce
Q 005656           17 LLASGAS-SGVISIWNL-EKRRLQSVIREAHDNAI----------ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRL   84 (685)
Q Consensus        17 ~latg~~-dg~I~vwd~-~~~~~~~~~~~~h~~~V----------~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~   84 (685)
                      .+++++. ++.|.-+|. .+|+.+..........+          ..++.  .+..++.++.|+.+..+|..++.    .
T Consensus        64 ~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~----~  137 (571)
T 2ad6_A           64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGK----I  137 (571)
T ss_dssp             EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCC----E
T ss_pred             EEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCC----E
Confidence            4566666 899999999 89998877652211110          12233  24577777889999999887763    3


Q ss_pred             eEec--ccCC--CCCeE-EEEecCCCEEEEEeC------CCceEEEEeecCceeeEechhhHHHHHhhccccccccccCc
Q 005656           85 LRFR--SGHS--APPLC-IRFYANGRHILSAGQ------DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKP  153 (685)
Q Consensus        85 ~~~~--~~h~--~~v~~-i~~~~~~~~l~s~s~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (685)
                      +-..  ..+.  ..+.+ ... .++ .++.++.      +|.|..+|..+++....+.........          ...|
T Consensus       138 ~W~~~~~~~~~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~----------~~~p  205 (571)
T 2ad6_A          138 NWEVEVCDPKVGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSV----------RLAK  205 (571)
T ss_dssp             EEEEECCCGGGTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHH----------TBCT
T ss_pred             EEEecCCCCCccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCcccc----------ccCc
Confidence            3221  1110  01211 111 144 5555554      789999999999887766432111000          0000


Q ss_pred             eeeeecc-----cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecC-----
Q 005656          154 VIAFDCA-----EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG-----  223 (685)
Q Consensus       154 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d-----  223 (685)
                      .......     ......|.                ..       ....  ........+++.+....+++++.+     
T Consensus       206 ~~~~~~~~~G~~~~g~~~w~----------------~~-------~~~~--gg~~~w~~~a~d~~~g~vy~~~g~~~~~~  260 (571)
T 2ad6_A          206 DFNSANPHYGQFGLGTKTWE----------------GD-------AWKI--GGGTNWGWYAYDPKLNLFYYGSGNPAPWN  260 (571)
T ss_dssp             TTTTTCGGGCCSSHHHHTSS----------------TT-------GGGG--CCCCCCSCCEEETTTTEEEEECCCCSCSC
T ss_pred             ccccccccccccccccccCc----------------cc-------ceec--CCCCeeeeEEEcCCCCeEEEECCCCcccc
Confidence            0000000     00000000                00       0000  011111234556666667666642     


Q ss_pred             -----------CcEEEEECCCCccccccccccccc--cCCCCcCEEEEEEcCCCC---EEEEEECCCeEEEEECCCCceE
Q 005656          224 -----------GWIERFNLQSGISRGSYLDMSERS--NYAHNGEVVGVACDSTNT---LMISAGYHGDIKVWDFKGRDLK  287 (685)
Q Consensus       224 -----------g~i~~~d~~~~~~~~~~~~~~~~~--~~~h~~~v~~l~~~~~~~---~l~s~s~dg~i~iwd~~~~~~~  287 (685)
                                 +.|..+|..+|+.+..+.......  ......++. +....+|+   .++.++.+|.++++|..+++.+
T Consensus       261 ~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~  339 (571)
T 2ad6_A          261 ETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLI  339 (571)
T ss_dssp             GGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred             CCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEE
Confidence                       359999999998877664211000  001112222 22224563   5677888999999999999988


Q ss_pred             EEeecCC--------------ce--------------------------eEEEEeecCCEEEEEe---------------
Q 005656          288 SRWEVGC--------------SL--------------------------VKIVYHRVNGLLATVA---------------  312 (685)
Q Consensus       288 ~~~~~~~--------------~i--------------------------~~~~~~~~~~~l~~~~---------------  312 (685)
                      .......              ++                          ..++++|++.++++.+               
T Consensus       340 w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~  419 (571)
T 2ad6_A          340 VAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYR  419 (571)
T ss_dssp             EEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCC
T ss_pred             eeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccc
Confidence            7665432              11                          2357888888777654               


Q ss_pred             ----------------------CCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcee
Q 005656          313 ----------------------DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI  370 (685)
Q Consensus       313 ----------------------~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i  370 (685)
                                            .++.|..||..+++.+.++... ..+....+...+..++.++.||.|+.||..+|+.+
T Consensus       420 ~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~l  498 (571)
T 2ad6_A          420 AGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKEL  498 (571)
T ss_dssp             TTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEE
Confidence                                  3478999999999988877633 22333233335667888999999999999999999


Q ss_pred             eEEeeccce--EEEEEcCCCCeEEEE
Q 005656          371 DAIHVDVSI--TALSLSPNMDVLATA  394 (685)
Q Consensus       371 ~~~~~~~~v--~~v~~spdg~~Lat~  394 (685)
                      ..+.....+  ..+.+..+|+.++.+
T Consensus       499 w~~~~~~~~~~~p~~~~~~G~~yv~~  524 (571)
T 2ad6_A          499 WNFKMPSGGIGSPMTYSFKGKQYIGS  524 (571)
T ss_dssp             EEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             EEEeCCCCcEeeeEEEEECCEEEEEE
Confidence            998866543  223345666644443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=99.09  E-value=7.1e-08  Score=104.77  Aligned_cols=342  Identities=10%  Similarity=0.025  Sum_probs=191.0

Q ss_pred             EEEEEeC-CCcEEEEeC-CCCeeeEEeeccccc----------CeeEEEEeCCCcE----EEEecCCCcEEEEEecCCCC
Q 005656           17 LLASGAS-SGVISIWNL-EKRRLQSVIREAHDN----------AIISLHFFANEPV----LMSASADNSIKMWIFDTTDG   80 (685)
Q Consensus        17 ~latg~~-dg~I~vwd~-~~~~~~~~~~~~h~~----------~V~~l~~sp~~~~----l~s~s~D~~v~iWd~~~~~~   80 (685)
                      .|++++. ++.|.-+|. .+|+.+-........          ....++++|.+..    ++.++.|+.+..+|..++. 
T Consensus        64 ~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~-  142 (599)
T 1w6s_A           64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGE-  142 (599)
T ss_dssp             EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCC-
T ss_pred             EEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCC-
Confidence            4666676 899999999 899988777522111          0123556543434    7778889999888877763 


Q ss_pred             CCceeEecc--cC--CCCCeE-EEEecCCCEEEEEe------CCCceEEEEeecCceeeEechhhHHHHHhhcccccccc
Q 005656           81 DPRLLRFRS--GH--SAPPLC-IRFYANGRHILSAG------QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEEL  149 (685)
Q Consensus        81 ~~~~~~~~~--~h--~~~v~~-i~~~~~~~~l~s~s------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (685)
                         .+-...  .+  ...+.+ -.. .++ .++.++      .+|.|+.+|..+++..-.+......... .+.  ....
T Consensus       143 ---~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~-~~~--p~~~  214 (599)
T 1w6s_A          143 ---TVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDL-LLA--SDFN  214 (599)
T ss_dssp             ---EEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHH-TBC--TTTT
T ss_pred             ---EEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccc-ccc--cccc
Confidence               322211  11  011111 111 144 455554      3799999999999887666432211000 000  0000


Q ss_pred             ccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCC-----
Q 005656          150 KLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG-----  224 (685)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg-----  224 (685)
                      ...+...  ........|                .-.       ....  .....-..+++.+....+++++.++     
T Consensus       215 ~~~~~~g--~~~~g~~tw----------------~g~-------~~~~--gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~  267 (599)
T 1w6s_A          215 IKNPHYG--QKGLGTGTW----------------EGD-------AWKI--GGGTNWGWYAYDPGTNLIYFGTGNPAPWNE  267 (599)
T ss_dssp             TTCGGGC--CTTHHHHTS----------------STT-------GGGG--CCCCCCSCCEEETTTTEEEEECCCCSCSCG
T ss_pred             ccccccc--ccccccccC----------------CCc-------ceec--CCCccccceeEeCCCCEEEEeCCCCccccC
Confidence            0000000  000000000                000       0000  1111112446667777888877653     


Q ss_pred             -----------cEEEEECCCCccccccccccccc--cCCCCcCEEEEEEc-CCC---CEEEEEECCCeEEEEECCCCceE
Q 005656          225 -----------WIERFNLQSGISRGSYLDMSERS--NYAHNGEVVGVACD-STN---TLMISAGYHGDIKVWDFKGRDLK  287 (685)
Q Consensus       225 -----------~i~~~d~~~~~~~~~~~~~~~~~--~~~h~~~v~~l~~~-~~~---~~l~s~s~dg~i~iwd~~~~~~~  287 (685)
                                 .|..+|..+|+.+..+.......  ......++. +... .+|   ..++.++.+|.++++|..+++++
T Consensus       268 ~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l  346 (599)
T 1w6s_A          268 TMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALV  346 (599)
T ss_dssp             GGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred             cccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEe
Confidence                       79999999999887764211000  001112222 2222 456   46777889999999999999988


Q ss_pred             EEeecCC--------------ce--------------------------eEEEEeecCCEEEEEe---------------
Q 005656          288 SRWEVGC--------------SL--------------------------VKIVYHRVNGLLATVA---------------  312 (685)
Q Consensus       288 ~~~~~~~--------------~i--------------------------~~~~~~~~~~~l~~~~---------------  312 (685)
                      .......              ++                          ..++++|+.+++++..               
T Consensus       347 w~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~  426 (599)
T 1w6s_A          347 SANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYK  426 (599)
T ss_dssp             EEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCC
T ss_pred             ecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeeccccccc
Confidence            7654321              11                          2356777766655431               


Q ss_pred             ------------------------CCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 005656          313 ------------------------DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR  368 (685)
Q Consensus       313 ------------------------~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~  368 (685)
                                              ..|.+..||+.+++.+-+.... .++..-.....+..++.++.||.++.||..+|+
T Consensus       427 ~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~  505 (599)
T 1w6s_A          427 AGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGD  505 (599)
T ss_dssp             TTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             CCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCC
Confidence                                    3478999999999988777522 222211122356778889999999999999999


Q ss_pred             eeeEEeeccc--eEEEEEcCCCC-eEEEEEe
Q 005656          369 QIDAIHVDVS--ITALSLSPNMD-VLATAHV  396 (685)
Q Consensus       369 ~i~~~~~~~~--v~~v~~spdg~-~Lat~~~  396 (685)
                      .+..++....  ..-+.+..+|+ |+++...
T Consensus       506 ~lW~~~l~~g~~~~P~~y~~~G~qyv~~~~G  536 (599)
T 1w6s_A          506 LLWKFKIPSGAIGYPMTYTHKGTQYVAIYYG  536 (599)
T ss_dssp             EEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             EEEEeeCCCCcEeccEEEEeCCEEEEEEEcc
Confidence            9998886654  23355667776 4554443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.09  E-value=3.8e-09  Score=106.88  Aligned_cols=262  Identities=14%  Similarity=0.088  Sum_probs=162.9

Q ss_pred             EEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCce
Q 005656            5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRL   84 (685)
Q Consensus         5 V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~   84 (685)
                      +.++...++|.  +..|+.+  |..+|. +++....+. ..........+.  +..+..++.++.+..+|.. +    +.
T Consensus        62 ~~~~~~~~~g~--l~v~t~~--l~~~d~-~g~~~~~~~-~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g----~~  128 (330)
T 3hxj_A           62 ECRPSIGKDGT--IYFGSDK--VYAINP-DGTEKWRFD-TKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-G----TE  128 (330)
T ss_dssp             EECCEETTTTE--ECCSSCE--EEEECC-CGGGGGGSC-C-----CCEEEE--TTEEEEECTTSEEEEECTT-S----CE
T ss_pred             ccceEEecCCc--EEEecCc--EEEECC-CCcEEEEEE-CCCCcccCceEE--CCEEEEEecCCEEEEEcCC-C----CE
Confidence            46677777775  4445544  888886 555444433 222223333343  4466777778888888765 3    33


Q ss_pred             eEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccc
Q 005656           85 LRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE  164 (685)
Q Consensus        85 ~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (685)
                      ......+...+.++...+++. ++.++.++.|..+|.. ++......                                 
T Consensus       129 ~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~---------------------------------  173 (330)
T 3hxj_A          129 KWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFK---------------------------------  173 (330)
T ss_dssp             EEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEE---------------------------------
T ss_pred             EEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEe---------------------------------
Confidence            333334445566677776765 6667778889988876 44332221                                 


Q ss_pred             cCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccccc
Q 005656          165 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMS  244 (685)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~  244 (685)
                                                         .....+.++.+.++|. +.+++  +.|..|| .++.....+.   
T Consensus       174 -----------------------------------~~~~~~~~~~~d~~g~-l~v~t--~~l~~~d-~~g~~~~~~~---  211 (330)
T 3hxj_A          174 -----------------------------------TNDAITSAASIGKDGT-IYFGS--DKVYAIN-PDGTEKWNFY---  211 (330)
T ss_dssp             -----------------------------------CSSCCCSCCEECTTCC-EEEES--SSEEEEC-TTSCEEEEEC---
T ss_pred             -----------------------------------cCCCceeeeEEcCCCE-EEEEe--CEEEEEC-CCCcEEEEEc---
Confidence                                               0112234455666666 45555  7899999 6766554442   


Q ss_pred             ccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCc-eeEEEEeecCCEEEEEeCCCeEEEEEcC
Q 005656          245 ERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCS-LVKIVYHRVNGLLATVADDLVIRLFDVV  323 (685)
Q Consensus       245 ~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~dg~I~i~d~~  323 (685)
                           .....+.++..++++. +..++.++.+..+|. ++.....+..... +..+.+.++ ..|.+++.+|.|..+|. 
T Consensus       212 -----~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~-g~l~v~t~~ggl~~~d~-  282 (330)
T 3hxj_A          212 -----AGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNT-DTIYFGSYDGHLYAINP-  282 (330)
T ss_dssp             -----CSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTT-SCEEEECTTCEEEEECT-
T ss_pred             -----cCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCC-CeEEEecCCCCEEEECC-
Confidence                 2335577888888775 555677888888874 5555555554422 334444444 46777888889999996 


Q ss_pred             CCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005656          324 ALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL  366 (685)
Q Consensus       324 ~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~  366 (685)
                      +++.+..+......+.++...++|+ |..++.+|.+++.....
T Consensus       283 ~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~  324 (330)
T 3hxj_A          283 DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLE  324 (330)
T ss_dssp             TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC--
T ss_pred             CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEeccc
Confidence            6777777776666778888888886 55688899999887654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=99.08  E-value=1.2e-07  Score=103.18  Aligned_cols=196  Identities=16%  Similarity=0.188  Sum_probs=127.1

Q ss_pred             EEEEccCCCEEEEEec--------------------C----CcEEEEECCCCccccccccccccc--cCCCCcCEEEEEE
Q 005656          207 ACTISACGNFAVLGTA--------------------G----GWIERFNLQSGISRGSYLDMSERS--NYAHNGEVVGVAC  260 (685)
Q Consensus       207 ~~~~s~~g~~l~~g~~--------------------d----g~i~~~d~~~~~~~~~~~~~~~~~--~~~h~~~v~~l~~  260 (685)
                      .+++.|....+++++.                    +    +.|..+|..+|+.+..+.......  ......++. +..
T Consensus       250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~  328 (582)
T 1flg_A          250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY  328 (582)
T ss_dssp             CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred             CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence            4677788888887763                    2    589999999999887764211000  000112222 222


Q ss_pred             c-CCCC---EEEEEECCCeEEEEECCCCceEEEeecCCce----------------------------------------
Q 005656          261 D-STNT---LMISAGYHGDIKVWDFKGRDLKSRWEVGCSL----------------------------------------  296 (685)
Q Consensus       261 ~-~~~~---~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i----------------------------------------  296 (685)
                      . .+|+   .++.++.+|.++++|..+++++........+                                        
T Consensus       329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~  408 (582)
T 1flg_A          329 KAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPF  408 (582)
T ss_dssp             ECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCT
T ss_pred             ecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCC
Confidence            2 4564   6788899999999999999988765543200                                        


Q ss_pred             ------eEEEEeecCCEEEEEe---------------------------------CCCeEEEEEcCCCeeEEEEecCCCC
Q 005656          297 ------VKIVYHRVNGLLATVA---------------------------------DDLVIRLFDVVALRMVRKFEGHTDR  337 (685)
Q Consensus       297 ------~~~~~~~~~~~l~~~~---------------------------------~dg~I~i~d~~~~~~~~~~~~h~~~  337 (685)
                            ..++++|+..++++..                                 .+|.|..||+.+++.+-+...+. +
T Consensus       409 ~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~  487 (582)
T 1flg_A          409 LGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-P  487 (582)
T ss_dssp             TCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-C
T ss_pred             ccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-C
Confidence                  1245666655555432                                 25789999999999887776432 2


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccceE--EEEEcCCCC-eEEEEEeCCCeEEEE
Q 005656          338 ITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSIT--ALSLSPNMD-VLATAHVDQNGVYLW  404 (685)
Q Consensus       338 I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~--~v~~spdg~-~Lat~~~d~~~I~lW  404 (685)
                      +..-.....+..++.++.||.++.||..+|+.+..++....+.  -+.|..+|+ |+++.+.-++.+-+|
T Consensus       488 ~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~G~gg~~~~~  557 (582)
T 1flg_A          488 LWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTVGYGGAVPLW  557 (582)
T ss_dssp             CCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCSHHHHH
T ss_pred             CcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEEccCCCccccc
Confidence            2221222246688889999999999999999999998876643  367777887 555554433333334

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.03  E-value=4e-07  Score=88.87  Aligned_cols=176  Identities=11%  Similarity=0.080  Sum_probs=116.3

Q ss_pred             CCeEEEEEccCCCEEEEE-ecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC---CCeEEE
Q 005656          203 TAVKACTISACGNFAVLG-TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY---HGDIKV  278 (685)
Q Consensus       203 ~~v~~~~~s~~g~~l~~g-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~---dg~i~i  278 (685)
                      .....+++++++..++++ ...+.|.++++..........        .......+++++|++..++.+..   .+.|..
T Consensus        79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~--------~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~  150 (267)
T 1npe_A           79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFD--------TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIET  150 (267)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------SSCSSEEEEEEETTTTEEEEEECCSSSCEEEE
T ss_pred             CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEE--------CCCCCccEEEEeeCCCEEEEEECCCCCcEEEE
Confidence            457889999976666555 456789999987543221111        11245689999997666655553   368888


Q ss_pred             EECCCCceEEEeec-CCceeEEEEeecCCEEEEE-eCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEe-C
Q 005656          279 WDFKGRDLKSRWEV-GCSLVKIVYHRVNGLLATV-ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG-M  355 (685)
Q Consensus       279 wd~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~-~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s-~  355 (685)
                      +++........... -.....++++++++.|+++ ...+.|.++|.........+.+ ......++..  +..|+.+. .
T Consensus       151 ~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~  227 (267)
T 1npe_A          151 SHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWK  227 (267)
T ss_dssp             EETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETT
T ss_pred             EecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEEEEEECC
Confidence            88865432222212 2457889999987766555 4567999999986554444443 3345677764  45555554 5


Q ss_pred             CCcEEEEEcCCCceeeEEeecc--ceEEEEEcCCCC
Q 005656          356 DGSLRIWDVILARQIDAIHVDV--SITALSLSPNMD  389 (685)
Q Consensus       356 Dg~I~iwd~~~~~~i~~~~~~~--~v~~v~~spdg~  389 (685)
                      .+.|.++|..+++.+..+....  ....+++.|++.
T Consensus       228 ~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          228 TNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             TTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             CCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence            6899999999999988887543  377888888764

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.98  E-value=7.8e-08  Score=90.94  Aligned_cols=182  Identities=12%  Similarity=0.090  Sum_probs=132.9

Q ss_pred             CCeEEEEEccCCCEEEEEecCC--cEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE-CCCeEEEE
Q 005656          203 TAVKACTISACGNFAVLGTAGG--WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVW  279 (685)
Q Consensus       203 ~~v~~~~~s~~g~~l~~g~~dg--~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iw  279 (685)
                      .....+.|+ ++....+.+.+|  .|+++|+.+++......-       .....--+++..  +..++... .++.+.+|
T Consensus        43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l-------~~~~FgeGit~~--g~~ly~ltw~~~~v~v~  112 (262)
T 3nol_A           43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIEL-------GKRYFGEGISDW--KDKIVGLTWKNGLGFVW  112 (262)
T ss_dssp             CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEEC-------CTTCCEEEEEEE--TTEEEEEESSSSEEEEE
T ss_pred             cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEec-------CCccceeEEEEe--CCEEEEEEeeCCEEEEE
Confidence            335788888 565555555555  899999999998877631       111122334443  44555554 58899999


Q ss_pred             ECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCC-----CCeEEEEEcCCCCEEEEEe
Q 005656          280 DFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT-----DRITDFCFSEDGKWLLSSG  354 (685)
Q Consensus       280 d~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~-----~~I~~l~~spdg~~l~s~s  354 (685)
                      |..+.+.+.++....  ....++++++.|+.+..++.|.++|..+.+.++++.-..     ..++.+.|. +|+..+..-
T Consensus       113 D~~t~~~~~ti~~~~--eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w  189 (262)
T 3nol_A          113 NIRNLRQVRSFNYDG--EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVW  189 (262)
T ss_dssp             ETTTCCEEEEEECSS--CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred             ECccCcEEEEEECCC--CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEc
Confidence            999999999988764  223444678877777778899999999999888876421     345678887 776555555


Q ss_pred             CCCcEEEEEcCCCceeeEEeec-------------cceEEEEEcCCCCeEEEEEeC
Q 005656          355 MDGSLRIWDVILARQIDAIHVD-------------VSITALSLSPNMDVLATAHVD  397 (685)
Q Consensus       355 ~Dg~I~iwd~~~~~~i~~~~~~-------------~~v~~v~~spdg~~Lat~~~d  397 (685)
                      .+..|.+.|..+|+.+..+...             ...+.++|+|+++.|++++..
T Consensus       190 ~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          190 QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence            6889999999999999998753             126899999999999888765

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.94  E-value=6.4e-08  Score=107.53  Aligned_cols=193  Identities=10%  Similarity=0.121  Sum_probs=131.9

Q ss_pred             CCEEEEEec------CCcEEEEECCCCccccccccccccccC-----------------------CCCcCEEEEEEcCCC
Q 005656          214 GNFAVLGTA------GGWIERFNLQSGISRGSYLDMSERSNY-----------------------AHNGEVVGVACDSTN  264 (685)
Q Consensus       214 g~~l~~g~~------dg~i~~~d~~~~~~~~~~~~~~~~~~~-----------------------~h~~~v~~l~~~~~~  264 (685)
                      +..++++..      +|.|+.||..+|+.+..+.........                       .+......+++++.+
T Consensus       162 ~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~  241 (668)
T 1kv9_A          162 KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPEL  241 (668)
T ss_dssp             TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTT
T ss_pred             CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCC
Confidence            345566554      488999999999987766421100000                       011112347888888


Q ss_pred             CEEEEEECCC-------------------eEEEEECCCCceEEEeecC----------CceeEEEEeecCC---EEEEEe
Q 005656          265 TLMISAGYHG-------------------DIKVWDFKGRDLKSRWEVG----------CSLVKIVYHRVNG---LLATVA  312 (685)
Q Consensus       265 ~~l~s~s~dg-------------------~i~iwd~~~~~~~~~~~~~----------~~i~~~~~~~~~~---~l~~~~  312 (685)
                      ..++.++.++                   .|..+|..+++.+..+...          .+.....+..+|+   .+++++
T Consensus       242 ~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~  321 (668)
T 1kv9_A          242 DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAP  321 (668)
T ss_dssp             TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECC
T ss_pred             CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEEC
Confidence            8888887766                   3999999999998887642          2333333445665   788999


Q ss_pred             CCCeEEEEEcCCCeeEEEEecCC-----------C-Ce------------------------EEEEEcCCCCEEEEEe--
Q 005656          313 DDLVIRLFDVVALRMVRKFEGHT-----------D-RI------------------------TDFCFSEDGKWLLSSG--  354 (685)
Q Consensus       313 ~dg~I~i~d~~~~~~~~~~~~h~-----------~-~I------------------------~~l~~spdg~~l~s~s--  354 (685)
                      .+|.++++|..+|+.+....-..           + ++                        ..++++|+...++...  
T Consensus       322 ~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~  401 (668)
T 1kv9_A          322 KNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQE  401 (668)
T ss_dssp             TTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEE
T ss_pred             CCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccc
Confidence            99999999999999885443211           0 00                        1267888776655421  


Q ss_pred             ----------------------------------CCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCCCe
Q 005656          355 ----------------------------------MDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG  400 (685)
Q Consensus       355 ----------------------------------~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~  400 (685)
                                                        .+|.|..||..+|+.+-.+....+.....+...+.++++++.|+ .
T Consensus       402 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg-~  480 (668)
T 1kv9_A          402 VPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAG-Q  480 (668)
T ss_dssp             CCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTS-E
T ss_pred             cceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcc-c
Confidence                                              24789999999999998887776665556666788899998776 9


Q ss_pred             EEEEEcC
Q 005656          401 VYLWVNR  407 (685)
Q Consensus       401 I~lW~~~  407 (685)
                      |+.|+.+
T Consensus       481 l~a~d~~  487 (668)
T 1kv9_A          481 MHAYSAD  487 (668)
T ss_dssp             EEEEETT
T ss_pred             chhhhhh
Confidence            9999854

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.90  E-value=5.2e-06  Score=94.50  Aligned_cols=325  Identities=13%  Similarity=0.118  Sum_probs=196.7

Q ss_pred             CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeec------ccccCeeEEEEeCCCcEEEEecCCCcEEEEEec
Q 005656            3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIRE------AHDNAIISLHFFANEPVLMSASADNSIKMWIFD   76 (685)
Q Consensus         3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~------~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~   76 (685)
                      ..|.++...++|. +. .|+.+ -+.+||..+++.......      .....|.++...++|.+.+ |+..+-|.+++..
T Consensus       211 ~~i~~i~~d~~g~-lw-igt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~  286 (781)
T 3v9f_A          211 NDVRCIYKDTNGN-IW-IGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWI-ATELNGIMILDLQ  286 (781)
T ss_dssp             SSEEEEEECTTCC-EE-EEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEE-EESSSCEEEEETT
T ss_pred             CceeEEEEcCCCC-EE-EEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEE-EeCCCCeEEECCC
Confidence            4588999988887 44 34445 589999887765433220      1245699999988886554 4444567778765


Q ss_pred             CCCCCCceeEe------------cccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccc
Q 005656           77 TTDGDPRLLRF------------RSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKM  144 (685)
Q Consensus        77 ~~~~~~~~~~~------------~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  144 (685)
                      ...-  .....            ..-....|.++...++|. |..|+.++-|..++........ +...           
T Consensus       287 ~~~~--~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~~-----------  351 (781)
T 3v9f_A          287 QNQF--LLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHT-WSYS-----------  351 (781)
T ss_dssp             CC-----------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEE-EC-------------
T ss_pred             CCee--eeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCccee-eccC-----------
Confidence            4321  11110            012345688888877775 5667767778888765433211 1000           


Q ss_pred             cccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCC
Q 005656          145 KEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG  224 (685)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg  224 (685)
                                                                ...     ..........|.+++..++|+ +.+|+.++
T Consensus       352 ------------------------------------------~~~-----~~~~~l~~~~v~~i~~d~~g~-lWigt~~~  383 (781)
T 3v9f_A          352 ------------------------------------------PTQ-----MNESSLSNKVVSSVCDDGQGK-LWIGTDGG  383 (781)
T ss_dssp             --------------------------------------------C-----CCSSCCSSSCEEEEEECTTSC-EEEEEBSS
T ss_pred             ------------------------------------------ccc-----cccCCCCCcceEEEEEcCCCC-EEEEeCCC
Confidence                                                      000     000001235688888888776 56777777


Q ss_pred             cEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEee---cCCceeEEEE
Q 005656          225 WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE---VGCSLVKIVY  301 (685)
Q Consensus       225 ~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~i~~~~~  301 (685)
                      -|..|+..++.......     ........|.++..++++.+ ..|+.++.+..+|..+++......   ....|.++..
T Consensus       384 Gl~~~~~~~~~~~~~~~-----~~~~~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~  457 (781)
T 3v9f_A          384 GINVFENGKRVAIYNKE-----NRELLSNSVLCSLKDSEGNL-WFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYE  457 (781)
T ss_dssp             CEEEEETTEEEEECC----------CCCSBEEEEEECTTSCE-EEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEE
T ss_pred             cEEEEECCCCeEEEccC-----CCCCCCcceEEEEECCCCCE-EEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEE
Confidence            79999987654332110     00134467999999888774 446777789999988776543321   1356788887


Q ss_pred             eecCCEEEEEeCCCeEEEEEcCCCeeEEEEecC-----CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEee-
Q 005656          302 HRVNGLLATVADDLVIRLFDVVALRMVRKFEGH-----TDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV-  375 (685)
Q Consensus       302 ~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h-----~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~-  375 (685)
                      .+++. |.+|+. +-+..||..+++........     ...|.++...++|++.+.....| |..||..+++.. .+.. 
T Consensus       458 d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~-~~~~~  533 (781)
T 3v9f_A          458 DKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVR-KFNQY  533 (781)
T ss_dssp             CTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEE-EECTT
T ss_pred             CCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEE-EccCC
Confidence            77666 444555 56889998877654333222     35799999999998655443345 778887665433 3321 


Q ss_pred             ----ccceEEEEEcCCCCeEEEEEeCCCeE-EEEEcC
Q 005656          376 ----DVSITALSLSPNMDVLATAHVDQNGV-YLWVNR  407 (685)
Q Consensus       376 ----~~~v~~v~~spdg~~Lat~~~d~~~I-~lW~~~  407 (685)
                          ...|.++...++|.+.+++. +  ++ +.|+..
T Consensus       534 ~~l~~~~i~~i~~d~~g~lWi~T~-~--Glv~~~d~~  567 (781)
T 3v9f_A          534 EGFCSNTINQIYRSSKGQMWLATG-E--GLVCFPSAR  567 (781)
T ss_dssp             TTCSCSCEEEEEECTTSCEEEEET-T--EEEEESCTT
T ss_pred             CCCCCCeeEEEEECCCCCEEEEEC-C--CceEEECCC
Confidence                23489999999998666653 3  55 887653

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.89  E-value=9.7e-06  Score=92.26  Aligned_cols=335  Identities=13%  Similarity=0.089  Sum_probs=197.8

Q ss_pred             CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeec------ccccCeeEEEEeCCCcEEEEecCCCcEEEEEec
Q 005656            3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIRE------AHDNAIISLHFFANEPVLMSASADNSIKMWIFD   76 (685)
Q Consensus         3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~------~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~   76 (685)
                      ..|.++...++|. + -.|+.++-|..||..+++.......      -....|.++...+++.+.+... + -+.+|+..
T Consensus       163 ~~i~~i~~d~~g~-l-wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~-~-Gl~~~d~~  238 (781)
T 3v9f_A          163 EQTWTATEAEDGK-L-YIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTS-K-GLALFNAN  238 (781)
T ss_dssp             CCEEEEEEEETTE-E-EEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEET-T-EEEEEETT
T ss_pred             cceEEEEECCCCC-E-EEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeC-C-cHheECCC
Confidence            3578888888886 4 4456564589999888765432110      1135689999888887666543 3 57788765


Q ss_pred             CCCCCCceeEecc-------cCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccccccc
Q 005656           77 TTDGDPRLLRFRS-------GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEEL  149 (685)
Q Consensus        77 ~~~~~~~~~~~~~-------~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (685)
                      ..    +......       -....|.++...++|. |..|+..+-|.+++..+........ .                
T Consensus       239 ~~----~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~-~----------------  296 (781)
T 3v9f_A          239 TE----TFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQ-I----------------  296 (781)
T ss_dssp             TT----EEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC-------------------------
T ss_pred             CC----cEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeec-c----------------
Confidence            43    2111111       1245688888877775 5556664567888865543211000 0                


Q ss_pred             ccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEE
Q 005656          150 KLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERF  229 (685)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~  229 (685)
                      .+.   .+                            ..      ...........|.++...++|+ +.+|+.++-|..|
T Consensus       297 ~f~---~~----------------------------~~------~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~  338 (781)
T 3v9f_A          297 RFE---FI----------------------------RE------GDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFI  338 (781)
T ss_dssp             -CE---EE----------------------------CB------CSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEE
T ss_pred             ccc---cc----------------------------cC------CCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEe
Confidence            000   00                            00      0000002245688999888886 6678877779999


Q ss_pred             ECCCCcccccccccc-ccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEee----cCCceeEEEEeec
Q 005656          230 NLQSGISRGSYLDMS-ERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE----VGCSLVKIVYHRV  304 (685)
Q Consensus       230 d~~~~~~~~~~~~~~-~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----~~~~i~~~~~~~~  304 (685)
                      +..++.......... .....-....|.++..+++|. |..|+.++-|..||..++.......    ....|.++...++
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~  417 (781)
T 3v9f_A          339 SNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSE  417 (781)
T ss_dssp             CSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTT
T ss_pred             CCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCC
Confidence            887654432211000 000012345799999988876 5566666779999987654332111    1256778887776


Q ss_pred             CCEEEEEeCCCeEEEEEcCCCeeEEEEe--cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEee------c
Q 005656          305 NGLLATVADDLVIRLFDVVALRMVRKFE--GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV------D  376 (685)
Q Consensus       305 ~~~l~~~~~dg~I~i~d~~~~~~~~~~~--~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~------~  376 (685)
                      +.+ .+|+.++-+..+|..+++......  .....|.++...++|++.+ |+. +-|..||..+++.......      .
T Consensus       418 g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~  494 (781)
T 3v9f_A          418 GNL-WFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLE  494 (781)
T ss_dssp             SCE-EEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSC
T ss_pred             CCE-EEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCccccccc
Confidence            664 457776789999988776433221  1346799999988887544 444 4589999887765443322      2


Q ss_pred             cceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          377 VSITALSLSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       377 ~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                      ..|.++...++|.+.+.+. ++ +|+.|+..
T Consensus       495 ~~i~~i~~d~~g~lWigt~-~~-Gl~~~~~~  523 (781)
T 3v9f_A          495 NFVRSIAQDSEGRFWIGTF-GG-GVGIYTPD  523 (781)
T ss_dssp             SCEEEEEECTTCCEEEEES-SS-CEEEECTT
T ss_pred             ceeEEEEEcCCCCEEEEEc-CC-CEEEEeCC
Confidence            3499999999998666543 33 67778643

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.88  E-value=2.6e-07  Score=88.55  Aligned_cols=193  Identities=9%  Similarity=0.007  Sum_probs=134.8

Q ss_pred             CeEEEEecCCCEEEEEeC--CCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEE
Q 005656           95 PLCIRFYANGRHILSAGQ--DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVT  172 (685)
Q Consensus        95 v~~i~~~~~~~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (685)
                      ...+.|++++...++.+.  ++.|+++|+.+++....+..                                        
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l----------------------------------------   62 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKM----------------------------------------   62 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEEC----------------------------------------
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEec----------------------------------------
Confidence            579999998755555443  57999999999887665531                                        


Q ss_pred             EEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEE-ecCCcEEEEECCCCccccccccccccccCCC
Q 005656          173 CHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAGGWIERFNLQSGISRGSYLDMSERSNYAH  251 (685)
Q Consensus       173 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h  251 (685)
                                                 ........+++.  |+.++++ ..++.+.++|..+.+....+..       + 
T Consensus        63 ---------------------------~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~-------g-  105 (266)
T 2iwa_A           63 ---------------------------DDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTH-------Q-  105 (266)
T ss_dssp             ---------------------------CTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEEC-------C-
T ss_pred             ---------------------------CCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEEC-------C-
Confidence                                       011112234443  4455444 4578999999999988877642       2 


Q ss_pred             CcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCC------ceeEEEEeecCCEEEEEeCCCeEEEEEcCCC
Q 005656          252 NGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGC------SLVKIVYHRVNGLLATVADDLVIRLFDVVAL  325 (685)
Q Consensus       252 ~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~------~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~  325 (685)
                      ...-.+  ++++++.++++..++.|.++|..+.+....+....      .+..+.|. ++.+++....++.|.+.|..++
T Consensus       106 ~~~g~g--lt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg  182 (266)
T 2iwa_A          106 MKDGWG--LATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDG  182 (266)
T ss_dssp             SSSCCE--EEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTC
T ss_pred             CCCeEE--EEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCC
Confidence            111133  44567777777678999999999998888877542      35677887 6765555556889999999999


Q ss_pred             eeEEEEecC-------------CCCeEEEEEcCCCCEEE-EEeCCCcEEEEEcCCC
Q 005656          326 RMVRKFEGH-------------TDRITDFCFSEDGKWLL-SSGMDGSLRIWDVILA  367 (685)
Q Consensus       326 ~~~~~~~~h-------------~~~I~~l~~spdg~~l~-s~s~Dg~I~iwd~~~~  367 (685)
                      +.+..+.-.             ....+.++|+|+++.++ ++...+.|.+.++...
T Consensus       183 ~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          183 TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            999988631             13568999999987554 5557788888887654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.88  E-value=5.4e-07  Score=85.15  Aligned_cols=182  Identities=12%  Similarity=0.057  Sum_probs=133.0

Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005656          203 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  282 (685)
Q Consensus       203 ~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~  282 (685)
                      .....+.|+ ++...++.+.+|.|+++|+.+++......        ......-++++.. ++..+..-.++.+.+||..
T Consensus        55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l--------~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~  124 (268)
T 3nok_A           55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWMER--------LGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGM  124 (268)
T ss_dssp             CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEEE--------CTTCCEEEEEECS-SCEEEEESSSCEEEEEETT
T ss_pred             cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEEC--------CCCcceeEEEEeC-CEEEEEEccCCEEEEEECC
Confidence            345677887 35555666777899999999998877651        1112223455543 2444444468999999999


Q ss_pred             CCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCC-----CCeEEEEEcCCCCEEEEEeCCC
Q 005656          283 GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT-----DRITDFCFSEDGKWLLSSGMDG  357 (685)
Q Consensus       283 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~-----~~I~~l~~spdg~~l~s~s~Dg  357 (685)
                      +.+.+.++.....-.  .++++++.|+++..++.|.++|..+.+.++++.-..     ..++.+.|. +|+..+..-.+.
T Consensus       125 Tl~~~~ti~~~~eGw--GLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~  201 (268)
T 3nok_A          125 PPQRERTTRYSGEGW--GLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSS  201 (268)
T ss_dssp             TTEEEEEEECSSCCC--CEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCS
T ss_pred             cCcEEEEEeCCCcee--EEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCC
Confidence            999999988764333  334678888888889999999999999988876322     246778887 776555555678


Q ss_pred             cEEEEEcCCCceeeEEeec--------------cceEEEEEcCCCCeEEEEEeC
Q 005656          358 SLRIWDVILARQIDAIHVD--------------VSITALSLSPNMDVLATAHVD  397 (685)
Q Consensus       358 ~I~iwd~~~~~~i~~~~~~--------------~~v~~v~~spdg~~Lat~~~d  397 (685)
                      .|.+.|..+|+.+..+...              .-.+.++|+|+++.|++++..
T Consensus       202 ~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~  255 (268)
T 3nok_A          202 DVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL  255 (268)
T ss_dssp             EEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred             eEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence            9999999999999988753              137899999998888887654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.87  E-value=2.7e-07  Score=87.22  Aligned_cols=190  Identities=14%  Similarity=0.105  Sum_probs=130.5

Q ss_pred             ceeEecccCCCCC--eEEEEecCCCEEEEEeCCC--ceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeee
Q 005656           83 RLLRFRSGHSAPP--LCIRFYANGRHILSAGQDR--AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD  158 (685)
Q Consensus        83 ~~~~~~~~h~~~v--~~i~~~~~~~~l~s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (685)
                      +++..+ .|....  ..+.|+ ++..+.+++.+|  .|+++|+.+++....+..                          
T Consensus        32 ~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l--------------------------   83 (262)
T 3nol_A           32 QIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIEL--------------------------   83 (262)
T ss_dssp             EEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEEC--------------------------
T ss_pred             EEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEec--------------------------
Confidence            344444 455555  788998 677777777776  899999999887666531                          


Q ss_pred             cccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECCCCccc
Q 005656          159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-AGGWIERFNLQSGISR  237 (685)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~dg~i~~~d~~~~~~~  237 (685)
                                                                 ........+.+.++.++..+ .++.+.+||..+.+..
T Consensus        84 -------------------------------------------~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~  120 (262)
T 3nol_A           84 -------------------------------------------GKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQV  120 (262)
T ss_dssp             -------------------------------------------CTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEE
T ss_pred             -------------------------------------------CCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEE
Confidence                                                       11111212223355555544 5789999999999998


Q ss_pred             cccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC------CceeEEEEeecCCEEEEE
Q 005656          238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG------CSLVKIVYHRVNGLLATV  311 (685)
Q Consensus       238 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------~~i~~~~~~~~~~~l~~~  311 (685)
                      .++..       +  ..-.+++  ++++.|+.+..++.|.++|..+.+....+...      ..++.+.+. +|.+.+..
T Consensus       121 ~ti~~-------~--~eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~  188 (262)
T 3nol_A          121 RSFNY-------D--GEGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANV  188 (262)
T ss_dssp             EEEEC-------S--SCCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred             EEEEC-------C--CCceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEE
Confidence            88752       1  1113444  45666666666788999999999988887653      234456776 67666555


Q ss_pred             eCCCeEEEEEcCCCeeEEEEecC------------CCCeEEEEEcCCCCEEEEEeC
Q 005656          312 ADDLVIRLFDVVALRMVRKFEGH------------TDRITDFCFSEDGKWLLSSGM  355 (685)
Q Consensus       312 ~~dg~I~i~d~~~~~~~~~~~~h------------~~~I~~l~~spdg~~l~s~s~  355 (685)
                      -.++.|.+.|..+++.+..+.-.            ....+.|||+|+++.|+..+.
T Consensus       189 w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          189 WQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             TTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             ccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            57889999999999999988642            135689999999887777664

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.87  E-value=7.1e-07  Score=83.68  Aligned_cols=183  Identities=12%  Similarity=0.082  Sum_probs=131.1

Q ss_pred             CCCeEEEEEccCCCEEEEEecC--CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEE-ECCCeEEE
Q 005656          202 PTAVKACTISACGNFAVLGTAG--GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA-GYHGDIKV  278 (685)
Q Consensus       202 ~~~v~~~~~s~~g~~l~~g~~d--g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-s~dg~i~i  278 (685)
                      ......+.|++ +....+.+..  ..|+.+|+.+++......-       .....--++++.  +..|+.. -.++.+.+
T Consensus        20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l-------~~~~fgeGi~~~--~~~ly~ltw~~~~v~v   89 (243)
T 3mbr_X           20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEV-------PPPYFGAGIVAW--RDRLIQLTWRNHEGFV   89 (243)
T ss_dssp             TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEEC-------CTTCCEEEEEEE--TTEEEEEESSSSEEEE
T ss_pred             ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeC-------CCCcceeEEEEe--CCEEEEEEeeCCEEEE
Confidence            34566888876 4444444443  4899999999998876631       111112334444  4444444 46899999


Q ss_pred             EECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCC-----CCeEEEEEcCCCCEEEEE
Q 005656          279 WDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT-----DRITDFCFSEDGKWLLSS  353 (685)
Q Consensus       279 wd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~-----~~I~~l~~spdg~~l~s~  353 (685)
                      ||..+.+.+.++.....-.  .+.++++.|+++..++.|.++|..+.+.++++.-..     ..++.+.|. +|+..+..
T Consensus        90 ~D~~tl~~~~ti~~~~~Gw--glt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanv  166 (243)
T 3mbr_X           90 YDLATLTPRARFRYPGEGW--ALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANV  166 (243)
T ss_dssp             EETTTTEEEEEEECSSCCC--EEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred             EECCcCcEEEEEeCCCCce--EEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEE
Confidence            9999999999998764333  344678877777778999999999999988876422     346777776 67655555


Q ss_pred             eCCCcEEEEEcCCCceeeEEeec--------------cceEEEEEcCCCCeEEEEEeC
Q 005656          354 GMDGSLRIWDVILARQIDAIHVD--------------VSITALSLSPNMDVLATAHVD  397 (685)
Q Consensus       354 s~Dg~I~iwd~~~~~~i~~~~~~--------------~~v~~v~~spdg~~Lat~~~d  397 (685)
                      -.+..|.+.|..+|+.+..+...              .-.+.++++|+++.|++++..
T Consensus       167 w~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~  224 (243)
T 3mbr_X          167 WLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR  224 (243)
T ss_dssp             TTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred             CCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence            46779999999999999988743              127899999999888888755

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.85  E-value=1.2e-06  Score=88.20  Aligned_cols=198  Identities=9%  Similarity=-0.016  Sum_probs=124.3

Q ss_pred             CeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcC-CCCEEEEEEC----------
Q 005656          204 AVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGY----------  272 (685)
Q Consensus       204 ~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~----------  272 (685)
                      .+..+++.+++..++++...+.|..+|..++.... +...   ...........+++++ +|+..++...          
T Consensus        81 ~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~-~~~~---~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~  156 (322)
T 2fp8_A           81 RTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQ-LATS---VDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQ  156 (322)
T ss_dssp             CEEEEEEETTTTEEEEEETTTEEEEECTTCEECEE-EESE---ETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHH
T ss_pred             CCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEE-eccc---CCCCcccccceEEEecCCCEEEEECCcccccccccce
Confidence            46788898733456666555568889877654321 1100   0001123578899999 8986666432          


Q ss_pred             -------CCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEE-eCCCeEEEEEcCCCe--eEEEEecCCCCeEEEE
Q 005656          273 -------HGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV-ADDLVIRLFDVVALR--MVRKFEGHTDRITDFC  342 (685)
Q Consensus       273 -------dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~I~i~d~~~~~--~~~~~~~h~~~I~~l~  342 (685)
                             +|.|..||..+++.......-.....++++|+++.|+++ ..++.|.+|++....  ....+....+ ...++
T Consensus       157 ~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~  235 (322)
T 2fp8_A          157 IMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIK  235 (322)
T ss_dssp             HHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEE
T ss_pred             ehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeE
Confidence                   367999998777654433333456679999999966665 556899999987521  1222222233 78899


Q ss_pred             EcCCCCEEEEEeC----------CCcEEEEEcCCCceeeEEeecc-----ceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          343 FSEDGKWLLSSGM----------DGSLRIWDVILARQIDAIHVDV-----SITALSLSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       343 ~spdg~~l~s~s~----------Dg~I~iwd~~~~~~i~~~~~~~-----~v~~v~~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                      +.++|++.++...          .+.|..+|. .++.+..+....     .++++++ .++ .|+.++...+.|..++..
T Consensus       236 ~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g-~L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          236 RNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDG-LLYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             ECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETT-EEEEECSSCSEEEEEEC-
T ss_pred             ECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCC-EEEEeecCCCceEEEecc
Confidence            9999987666544          466888885 588887776542     3667776 344 566665555588888755


Q ss_pred             CC
Q 005656          408 CM  409 (685)
Q Consensus       408 ~~  409 (685)
                      ..
T Consensus       313 ~~  314 (322)
T 2fp8_A          313 KK  314 (322)
T ss_dssp             --
T ss_pred             cc
Confidence            43

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.79  E-value=6e-06  Score=82.27  Aligned_cols=245  Identities=7%  Similarity=-0.021  Sum_probs=140.0

Q ss_pred             CeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCC
Q 005656           35 RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR  114 (685)
Q Consensus        35 ~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg  114 (685)
                      .+.+..+. . .....+++|+++++++++...++.|..|+.+..     ..... .....+..+++.++|+.+++.....
T Consensus        22 ~~~~~~~p-~-~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-----~~~~~-~~~~~p~gia~~~dG~l~vad~~~~   93 (306)
T 2p4o_A           22 AKIITSFP-V-NTFLENLASAPDGTIFVTNHEVGEIVSITPDGN-----QQIHA-TVEGKVSGLAFTSNGDLVATGWNAD   93 (306)
T ss_dssp             EEEEEEEC-T-TCCEEEEEECTTSCEEEEETTTTEEEEECTTCC-----EEEEE-ECSSEEEEEEECTTSCEEEEEECTT
T ss_pred             ceEeEeCC-C-CCCcceEEECCCCCEEEEeCCCCeEEEECCCCc-----eEEEE-eCCCCceeEEEcCCCcEEEEeccCC
Confidence            34444553 1 256789999999998888777888888865432     22221 1234688999999998655543332


Q ss_pred             c--eEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCc
Q 005656          115 A--FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGE  192 (685)
Q Consensus       115 ~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~  192 (685)
                      .  |..++..+++......                                                     .       
T Consensus        94 ~~~v~~~d~~~g~~~~~~~-----------------------------------------------------~-------  113 (306)
T 2p4o_A           94 SIPVVSLVKSDGTVETLLT-----------------------------------------------------L-------  113 (306)
T ss_dssp             SCEEEEEECTTSCEEEEEE-----------------------------------------------------C-------
T ss_pred             cceEEEEcCCCCeEEEEEe-----------------------------------------------------C-------
Confidence            3  4445544443221110                                                     0       


Q ss_pred             eeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc-cc-ccccccCCCCcCEEEEEEcCCCCEEEEE
Q 005656          193 HILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY-LD-MSERSNYAHNGEVVGVACDSTNTLMISA  270 (685)
Q Consensus       193 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~-~~-~~~~~~~~h~~~v~~l~~~~~~~~l~s~  270 (685)
                             ........++..+.+..+++-..+|.|+++|..++...... .. .........-....++  +++++.++.+
T Consensus       114 -------~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~  184 (306)
T 2p4o_A          114 -------PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVS  184 (306)
T ss_dssp             -------TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEE
T ss_pred             -------CCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEE
Confidence                   00111233444454444444445888999998764211100 00 0000000112244555  6777766555


Q ss_pred             E-CCCeEEEEECCC-Cce--EEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEE--EEecCCCCeEEEEEc
Q 005656          271 G-YHGDIKVWDFKG-RDL--KSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR--KFEGHTDRITDFCFS  344 (685)
Q Consensus       271 s-~dg~i~iwd~~~-~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~--~~~~h~~~I~~l~~s  344 (685)
                      . ..+.|..+++.. +..  ...+........++++++|+++++....+.|.++|.. ++...  .+......+++++|.
T Consensus       185 d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~  263 (306)
T 2p4o_A          185 NTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFG  263 (306)
T ss_dssp             ETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEEC
T ss_pred             eCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEe
Confidence            4 668999999875 332  1122212345678999999887777778899999975 55432  233334568999998


Q ss_pred             ---CCCCEEEEEeCCC
Q 005656          345 ---EDGKWLLSSGMDG  357 (685)
Q Consensus       345 ---pdg~~l~s~s~Dg  357 (685)
                         ||++.|+.++..+
T Consensus       264 g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          264 QTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             CSTTTTTEEEEEECTT
T ss_pred             cccCCCCEEEEECCCC
Confidence               8988777666543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.78  E-value=7.8e-07  Score=96.66  Aligned_cols=193  Identities=12%  Similarity=0.065  Sum_probs=125.9

Q ss_pred             CCEEEEEec------CCcEEEEECCCCcccccccccccccc----------------------------CCCCc--CEEE
Q 005656          214 GNFAVLGTA------GGWIERFNLQSGISRGSYLDMSERSN----------------------------YAHNG--EVVG  257 (685)
Q Consensus       214 g~~l~~g~~------dg~i~~~d~~~~~~~~~~~~~~~~~~----------------------------~~h~~--~v~~  257 (685)
                      +..+++++.      +|.|+.+|..+|+.+..+........                            ..+.+  ....
T Consensus       160 ~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~  239 (571)
T 2ad6_A          160 KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGW  239 (571)
T ss_dssp             TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSC
T ss_pred             CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeee
Confidence            345666665      78999999999988766542111000                            00000  0123


Q ss_pred             EEEcCCCCEEEEEECC----------------CeEEEEECCCCceEEEeecCC----------ceeEEEEeecCC---EE
Q 005656          258 VACDSTNTLMISAGYH----------------GDIKVWDFKGRDLKSRWEVGC----------SLVKIVYHRVNG---LL  308 (685)
Q Consensus       258 l~~~~~~~~l~s~s~d----------------g~i~iwd~~~~~~~~~~~~~~----------~i~~~~~~~~~~---~l  308 (685)
                      +++++....++.++.+                +.|..+|..+++.+..++...          ...-+....+|+   .+
T Consensus       240 ~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v  319 (571)
T 2ad6_A          240 YAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLL  319 (571)
T ss_dssp             CEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEE
T ss_pred             EEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEE
Confidence            5677766666666532                369999999999988776421          111122334674   67


Q ss_pred             EEEeCCCeEEEEEcCCCeeEEEEecCC-------------CCe--------------------------EEEEEcCCCCE
Q 005656          309 ATVADDLVIRLFDVVALRMVRKFEGHT-------------DRI--------------------------TDFCFSEDGKW  349 (685)
Q Consensus       309 ~~~~~dg~I~i~d~~~~~~~~~~~~h~-------------~~I--------------------------~~l~~spdg~~  349 (685)
                      +.++.+|.++++|..+|+.+..+.-..             .++                          ..++++|+..+
T Consensus       320 ~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~  399 (571)
T 2ad6_A          320 SHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRT  399 (571)
T ss_dssp             EEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTE
T ss_pred             EEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCE
Confidence            788999999999999999887765221             111                          23578888777


Q ss_pred             EEEEe-------------------------------------CCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEE
Q 005656          350 LLSSG-------------------------------------MDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLA  392 (685)
Q Consensus       350 l~s~s-------------------------------------~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~La  392 (685)
                      ++..+                                     .+|.|..||..+|+.+..+....++.+..+...+..++
T Consensus       400 ~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~  479 (571)
T 2ad6_A          400 LYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVW  479 (571)
T ss_dssp             EEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEE
T ss_pred             EEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEE
Confidence            76653                                     35789999999999988887665544444444567777


Q ss_pred             EEEeCCCeEEEEEcC
Q 005656          393 TAHVDQNGVYLWVNR  407 (685)
Q Consensus       393 t~~~d~~~I~lW~~~  407 (685)
                      +++.|+ .|+.|+.+
T Consensus       480 ~g~~dg-~l~a~D~~  493 (571)
T 2ad6_A          480 YATLDG-YLKALDNK  493 (571)
T ss_dssp             EECTTS-EEEEEETT
T ss_pred             EEcCCC-eEEEEECC
Confidence            787776 89999843

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.75  E-value=1.4e-06  Score=87.71  Aligned_cols=241  Identities=11%  Similarity=0.045  Sum_probs=144.3

Q ss_pred             cCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecc-----------------cCCCCCeEEEEec-CCCEEE
Q 005656           47 NAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS-----------------GHSAPPLCIRFYA-NGRHIL  108 (685)
Q Consensus        47 ~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~-----------------~h~~~v~~i~~~~-~~~~l~  108 (685)
                      ....+++|.+++++++++..++.|..|+.+..  ....+....                 .....+..+++.+ ++ .|+
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~l~   95 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNS--GFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-QLY   95 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTT--CEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-EEE
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCC--ceEEEecccccccccccccccchhccccCCCCceEEEcCCCC-cEE
Confidence            34577889999987888888888888865543  111111100                 0113578899997 55 455


Q ss_pred             EEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCcc
Q 005656          109 SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNF  188 (685)
Q Consensus       109 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~  188 (685)
                      .+...+.|..+|..++.. ..+....                                                   .  
T Consensus        96 v~d~~~~i~~~d~~~g~~-~~~~~~~---------------------------------------------------~--  121 (322)
T 2fp8_A           96 IVDCYYHLSVVGSEGGHA-TQLATSV---------------------------------------------------D--  121 (322)
T ss_dssp             EEETTTEEEEECTTCEEC-EEEESEE---------------------------------------------------T--
T ss_pred             EEECCCCEEEEeCCCCEE-EEecccC---------------------------------------------------C--
Confidence            555555577776543321 1110000                                                   0  


Q ss_pred             ccCceeecCCCCCCCCeEEEEEcc-CCCEEEEEec-----------------CCcEEEEECCCCccccccccccccccCC
Q 005656          189 VLGEHILRPCPENPTAVKACTISA-CGNFAVLGTA-----------------GGWIERFNLQSGISRGSYLDMSERSNYA  250 (685)
Q Consensus       189 ~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~-----------------dg~i~~~d~~~~~~~~~~~~~~~~~~~~  250 (685)
                        +        ........+++.+ +|+..++-..                 +|.|..||..++......         .
T Consensus       122 --~--------~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~---------~  182 (322)
T 2fp8_A          122 --G--------VPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLL---------K  182 (322)
T ss_dssp             --T--------EECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEE---------E
T ss_pred             --C--------CcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEec---------c
Confidence              0        0012356788888 7875555432                 367888988766543221         1


Q ss_pred             CCcCEEEEEEcCCCCEEEEE-ECCCeEEEEECCCC---ceEEEeecCCceeEEEEeecCCEEEEEeC----------CCe
Q 005656          251 HNGEVVGVACDSTNTLMISA-GYHGDIKVWDFKGR---DLKSRWEVGCSLVKIVYHRVNGLLATVAD----------DLV  316 (685)
Q Consensus       251 h~~~v~~l~~~~~~~~l~s~-s~dg~i~iwd~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----------dg~  316 (685)
                      ......+++++++++.++.+ +..+.|..|++...   .........+ ...+++.++|++.++...          .+.
T Consensus       183 ~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~  261 (322)
T 2fp8_A          183 ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPK  261 (322)
T ss_dssp             EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEE
T ss_pred             CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccE
Confidence            11234579999999866655 45689999998752   2111112233 778999999986666544          467


Q ss_pred             EEEEEcCCCeeEEEEecCC----CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005656          317 IRLFDVVALRMVRKFEGHT----DRITDFCFSEDGKWLLSSGMDGSLRIWDVIL  366 (685)
Q Consensus       317 I~i~d~~~~~~~~~~~~h~----~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~  366 (685)
                      |..+|.. ++.+..+....    ..++.+++ .++++.++....+.|.++++..
T Consensus       262 v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          262 GIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             EEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred             EEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence            8888874 77777776442    35777777 3565555555778899998753

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.75  E-value=5.9e-06  Score=82.33  Aligned_cols=184  Identities=12%  Similarity=0.067  Sum_probs=114.6

Q ss_pred             CeEEEEEccCCCEEEEEecC--CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005656          204 AVKACTISACGNFAVLGTAG--GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF  281 (685)
Q Consensus       204 ~v~~~~~s~~g~~l~~g~~d--g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~  281 (685)
                      .+..++++++|+.+++....  ..|..++..++........       .......+++..+.+..+++...++.|+++|.
T Consensus        73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~-------~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~  145 (306)
T 2p4o_A           73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTL-------PDAIFLNGITPLSDTQYLTADSYRGAIWLIDV  145 (306)
T ss_dssp             EEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEEC-------TTCSCEEEEEESSSSEEEEEETTTTEEEEEET
T ss_pred             CceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeC-------CCccccCcccccCCCcEEEEECCCCeEEEEeC
Confidence            47789999999966655433  2477888877765322210       11223345555555554554446889999998


Q ss_pred             CCCce-EEEe-------ec--C-CceeEEEEeecCCEEEEE-eCCCeEEEEEcCC-Cee--EEEEecCCCCeEEEEEcCC
Q 005656          282 KGRDL-KSRW-------EV--G-CSLVKIVYHRVNGLLATV-ADDLVIRLFDVVA-LRM--VRKFEGHTDRITDFCFSED  346 (685)
Q Consensus       282 ~~~~~-~~~~-------~~--~-~~i~~~~~~~~~~~l~~~-~~dg~I~i~d~~~-~~~--~~~~~~h~~~I~~l~~spd  346 (685)
                      .++.. +...       ..  . .....+  +++++.|+++ ...+.|..||+.. ++.  ...+.. ......++++++
T Consensus       146 ~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~d  222 (306)
T 2p4o_A          146 VQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVE  222 (306)
T ss_dssp             TTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTT
T ss_pred             CCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCC
Confidence            76432 1100       00  1 223444  8888766555 4578999999874 321  122221 134677899999


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCceee--EEeec-cceEEEEEc---CCCCeEEEEEeCC
Q 005656          347 GKWLLSSGMDGSLRIWDVILARQID--AIHVD-VSITALSLS---PNMDVLATAHVDQ  398 (685)
Q Consensus       347 g~~l~s~s~Dg~I~iwd~~~~~~i~--~~~~~-~~v~~v~~s---pdg~~Lat~~~d~  398 (685)
                      |++.++....+.|.+++.. |+...  .+... ..+++++|.   |+++.|++++..+
T Consensus       223 G~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          223 GNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             CCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             CCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence            9887777778899999964 66533  23333 348999999   8988888887653

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.69  E-value=5.6e-06  Score=90.03  Aligned_cols=82  Identities=17%  Similarity=0.185  Sum_probs=60.7

Q ss_pred             CCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCe-EEEEEcCCCC-EE
Q 005656          273 HGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI-TDFCFSEDGK-WL  350 (685)
Q Consensus       273 dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I-~~l~~spdg~-~l  350 (685)
                      +|.|..||+.+++.+.+.....+...-.....+.++++++.|+.++.||.++|+.+.+++...+.+ .-+.|..+|+ |+
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv  544 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence            588999999999998887766444433334457888889999999999999999999988543322 2256777887 44


Q ss_pred             EEEe
Q 005656          351 LSSG  354 (685)
Q Consensus       351 ~s~s  354 (685)
                      ++.+
T Consensus       545 ~~~~  548 (582)
T 1flg_A          545 GVTV  548 (582)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            4443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.69  E-value=3.1e-06  Score=91.92  Aligned_cols=82  Identities=15%  Similarity=0.075  Sum_probs=58.2

Q ss_pred             CCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCe-EEEEEcCCCC-EE
Q 005656          273 HGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI-TDFCFSEDGK-WL  350 (685)
Q Consensus       273 dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I-~~l~~spdg~-~l  350 (685)
                      +|.|..||+.+++.+.......+...-.+...+.++++++.|+.++.||.++|+.+.+++-..+.+ .-+.+..+|+ |+
T Consensus       452 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv  531 (599)
T 1w6s_A          452 LGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYV  531 (599)
T ss_dssp             CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             cCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEE
Confidence            478999999999998887655443332334467888889999999999999999999887443221 2245556776 44


Q ss_pred             EEEe
Q 005656          351 LSSG  354 (685)
Q Consensus       351 ~s~s  354 (685)
                      ++.+
T Consensus       532 ~~~~  535 (599)
T 1w6s_A          532 AIYY  535 (599)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            4443

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.69  E-value=4.8e-06  Score=78.07  Aligned_cols=130  Identities=16%  Similarity=0.098  Sum_probs=93.3

Q ss_pred             CCEE-EEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec
Q 005656          214 GNFA-VLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV  292 (685)
Q Consensus       214 g~~l-~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  292 (685)
                      ++.+ ++...++.+.+||..+.+...++..       +  ..-.+++  +++..|+.+..++.|.++|..+.+....+..
T Consensus        74 ~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~-------~--~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V  142 (243)
T 3mbr_X           74 RDRLIQLTWRNHEGFVYDLATLTPRARFRY-------P--GEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKV  142 (243)
T ss_dssp             TTEEEEEESSSSEEEEEETTTTEEEEEEEC-------S--SCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred             CCEEEEEEeeCCEEEEEECCcCcEEEEEeC-------C--CCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEE
Confidence            4444 4445688999999999999888752       1  2224555  4566666666688999999999988887765


Q ss_pred             C------CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecC-------------CCCeEEEEEcCCCCEEEEE
Q 005656          293 G------CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH-------------TDRITDFCFSEDGKWLLSS  353 (685)
Q Consensus       293 ~------~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h-------------~~~I~~l~~spdg~~l~s~  353 (685)
                      .      ..++.+.+. +|.+.+....+..|.+.|..+++.+..+.-.             ....+.|+++|+++.|+..
T Consensus       143 ~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVT  221 (243)
T 3mbr_X          143 TAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVT  221 (243)
T ss_dssp             EETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEE
T ss_pred             ccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEE
Confidence            3      344556655 5665555556889999999999999888621             1256899999988777666


Q ss_pred             eC
Q 005656          354 GM  355 (685)
Q Consensus       354 s~  355 (685)
                      +.
T Consensus       222 GK  223 (243)
T 3mbr_X          222 GK  223 (243)
T ss_dssp             ET
T ss_pred             CC
Confidence            53

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.67  E-value=3.1e-06  Score=94.08  Aligned_cols=272  Identities=12%  Similarity=-0.015  Sum_probs=153.9

Q ss_pred             EEEEeC-CCcEEEEecCCC-----------cEEEEEecCCCCCCceeEec-ccCCCCCeEEEEecCCCEEEEEeC-CCce
Q 005656           51 SLHFFA-NEPVLMSASADN-----------SIKMWIFDTTDGDPRLLRFR-SGHSAPPLCIRFYANGRHILSAGQ-DRAF  116 (685)
Q Consensus        51 ~l~~sp-~~~~l~s~s~D~-----------~v~iWd~~~~~~~~~~~~~~-~~h~~~v~~i~~~~~~~~l~s~s~-dg~i  116 (685)
                      ++++.+ ++++++.|+.++           .+.+||..+.  ....+... ..+.....++++..+++.++.|+. ++.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~--~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v  267 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTG--IVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT  267 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTC--CBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCC--cEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCce
Confidence            667777 888888887543           4666766554  33333322 223333445788889999999884 4578


Q ss_pred             EEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeec
Q 005656          117 RLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR  196 (685)
Q Consensus       117 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  196 (685)
                      .+||..+++-...-                                                                  
T Consensus       268 ~~yd~~t~~W~~~~------------------------------------------------------------------  281 (656)
T 1k3i_A          268 SLYDSSSDSWIPGP------------------------------------------------------------------  281 (656)
T ss_dssp             EEEEGGGTEEEECC------------------------------------------------------------------
T ss_pred             EEecCcCCceeECC------------------------------------------------------------------
Confidence            88887655321100                                                                  


Q ss_pred             CCCCCCCCeEEEEEccCCCEEEEEe-cC-----CcEEEEECCCCccccccccc-cccccCCCCcCEEEEEEcCCCCEEEE
Q 005656          197 PCPENPTAVKACTISACGNFAVLGT-AG-----GWIERFNLQSGISRGSYLDM-SERSNYAHNGEVVGVACDSTNTLMIS  269 (685)
Q Consensus       197 ~~~~~~~~v~~~~~s~~g~~l~~g~-~d-----g~i~~~d~~~~~~~~~~~~~-~~~~~~~h~~~v~~l~~~~~~~~l~s  269 (685)
                      .. .....-.++++.++|+.+++|+ .+     ..+.+||..++.....-... .......+.     ..+..++..++.
T Consensus       282 ~~-~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~-----~~~~~~~~iyv~  355 (656)
T 1k3i_A          282 DM-QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ-----GLYRSDNHAWLF  355 (656)
T ss_dssp             CC-SSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTT-----GGGTTTCSCCEE
T ss_pred             CC-CccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccccc-----ceeecCCceEEE
Confidence            00 1111123455667899999988 34     46999999887643320000 000000111     112234444455


Q ss_pred             EECC---------CeEEEEECCCCceEEEeecC----------CceeEEEEee-cCCEEEEEeCCC-----------eEE
Q 005656          270 AGYH---------GDIKVWDFKGRDLKSRWEVG----------CSLVKIVYHR-VNGLLATVADDL-----------VIR  318 (685)
Q Consensus       270 ~s~d---------g~i~iwd~~~~~~~~~~~~~----------~~i~~~~~~~-~~~~l~~~~~dg-----------~I~  318 (685)
                      ++.+         ..+..||..+..........          ..-.++.+.. +++++++|+.++           .|.
T Consensus       356 Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~  435 (656)
T 1k3i_A          356 GWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIIT  435 (656)
T ss_dssp             ECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEE
T ss_pred             ECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEE
Confidence            5444         35678888776533322211          1123344433 677888887532           688


Q ss_pred             EEEcCCCeeEEEE--ecCCCCe-EEEEEcCCCCEEEEEeCC-----------CcEEEEEcCCCceeeEEeeccc---eEE
Q 005656          319 LFDVVALRMVRKF--EGHTDRI-TDFCFSEDGKWLLSSGMD-----------GSLRIWDVILARQIDAIHVDVS---ITA  381 (685)
Q Consensus       319 i~d~~~~~~~~~~--~~h~~~I-~~l~~spdg~~l~s~s~D-----------g~I~iwd~~~~~~i~~~~~~~~---v~~  381 (685)
                      +||..+.+-....  .-+..+. .+++..|+|++++.|+.+           ..+.+||..+++-...-....+   ..+
T Consensus       436 ~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~  515 (656)
T 1k3i_A          436 LGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSI  515 (656)
T ss_dssp             CCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEE
T ss_pred             cCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccH
Confidence            8888876544332  2222332 345677899999999854           4689999877653321111111   345


Q ss_pred             EEEcCCCCeEEEEEe
Q 005656          382 LSLSPNMDVLATAHV  396 (685)
Q Consensus       382 v~~spdg~~Lat~~~  396 (685)
                      ..+.|+|+.++.|+.
T Consensus       516 a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          516 SLLLPDGRVFNGGGG  530 (656)
T ss_dssp             EEECTTSCEEEEECC
T ss_pred             hhcCCCcEEEecCCC
Confidence            567799999999885

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.67  E-value=7.8e-05  Score=75.53  Aligned_cols=253  Identities=11%  Similarity=-0.025  Sum_probs=150.5

Q ss_pred             EEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcE-EEEecCCCcEEEEEecCCCCCCc
Q 005656            5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPV-LMSASADNSIKMWIFDTTDGDPR   83 (685)
Q Consensus         5 V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~-l~s~s~D~~v~iWd~~~~~~~~~   83 (685)
                      .+|.+..+++  +|+.+. ...|+..++........+.  ....+..++|.+.+.. .++-...+.|..++.+...    
T Consensus        36 ~~C~~~~~~~--~ll~~~-~~~I~~i~~~g~~~~~~~~--~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~----  106 (349)
T 3v64_C           36 RSCKALGPEP--VLLFAN-RIDIRQVLPHRSEYTLLLN--NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN----  106 (349)
T ss_dssp             SCEEESSSCC--EEEEEC-BSCEEEECTTSCCEEEEEC--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS----
T ss_pred             CcccccccCc--eeEeec-ccceEEEeCCCCeeEEeec--CCCceEEEEEeccccEEEEEeccCCceEEEecCCCC----
Confidence            4566655533  344333 3568888887765554443  3345789999976554 4455567788888776542    


Q ss_pred             eeEecccCCCCCeEEEEecCCCEEE-EEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccc
Q 005656           84 LLRFRSGHSAPPLCIRFYANGRHIL-SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI  162 (685)
Q Consensus        84 ~~~~~~~h~~~v~~i~~~~~~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (685)
                      ...........+..+++.+.+..|+ +-...+.|.+.++........+.                               
T Consensus       107 ~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~-------------------------------  155 (349)
T 3v64_C          107 VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW-------------------------------  155 (349)
T ss_dssp             CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-------------------------------
T ss_pred             ceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEe-------------------------------
Confidence            1122222334567899987655554 44456677777764322111110                               


Q ss_pred             cccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe-cC-CcEEEEECCCCcccccc
Q 005656          163 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-AG-GWIERFNLQSGISRGSY  240 (685)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~d-g~i~~~d~~~~~~~~~~  240 (685)
                                                           ........+++.|.+..++... .. +.|..+++.........
T Consensus       156 -------------------------------------~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~  198 (349)
T 3v64_C          156 -------------------------------------QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA  198 (349)
T ss_dssp             -------------------------------------TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESC
T ss_pred             -------------------------------------CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEE
Confidence                                                 1234468899998666665554 34 78999988754322211


Q ss_pred             ccccccccCCCCcCEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCceEEEeec-CCceeEEEEeecCCEEEEEeCCCeEE
Q 005656          241 LDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWEV-GCSLVKIVYHRVNGLLATVADDLVIR  318 (685)
Q Consensus       241 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~I~  318 (685)
                      .        ..-....++++++++..|+.+. ..+.|..+|+........+.. ......+++ ..+.++++-...+.|.
T Consensus       199 ~--------~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~  269 (349)
T 3v64_C          199 D--------THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSIN  269 (349)
T ss_dssp             C--------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEE
T ss_pred             E--------CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEE
Confidence            1        2234578999998777666654 567899999875443333322 234566777 3455666666678888


Q ss_pred             EEEcCCCeeEEEEecCCCCeEEEEE
Q 005656          319 LFDVVALRMVRKFEGHTDRITDFCF  343 (685)
Q Consensus       319 i~d~~~~~~~~~~~~h~~~I~~l~~  343 (685)
                      .++..+++.+..+........++++
T Consensus       270 ~~~~~~G~~~~~i~~~~~~p~gi~v  294 (349)
T 3v64_C          270 SANKFTGKNQEIIRNKLHFPMDIHT  294 (349)
T ss_dssp             EEETTTCCSCEEEECSCSCCCCEEE
T ss_pred             EEEccCCCccEEeccCCCCCceEEE
Confidence            8887777766666544444445544

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.65  E-value=3.9e-06  Score=79.27  Aligned_cols=188  Identities=12%  Similarity=0.079  Sum_probs=127.5

Q ss_pred             eeEecccCCCCC--eEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccc
Q 005656           84 LLRFRSGHSAPP--LCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE  161 (685)
Q Consensus        84 ~~~~~~~h~~~v--~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (685)
                      .+..+ .|....  ..+.|+ ++.+.++.+.+|.|+++|+.+++....+ ..                            
T Consensus        45 Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~----------------------------   93 (268)
T 3nok_A           45 IIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL----------------------------   93 (268)
T ss_dssp             EEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC----------------------------
T ss_pred             EEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC----------------------------
Confidence            34444 454443  678887 4667778888899999999988765544 10                            


Q ss_pred             ccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccc
Q 005656          162 IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYL  241 (685)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~  241 (685)
                                                             .....-.+++.. ++..++...++.+.+||..+.+...++.
T Consensus        94 ---------------------------------------~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~  133 (268)
T 3nok_A           94 ---------------------------------------GNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTR  133 (268)
T ss_dssp             ---------------------------------------TTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEE
T ss_pred             ---------------------------------------CCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEe
Confidence                                                   011112233332 2333444568899999999999988875


Q ss_pred             cccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC------CceeEEEEeecCCEEEEEeCCC
Q 005656          242 DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG------CSLVKIVYHRVNGLLATVADDL  315 (685)
Q Consensus       242 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------~~i~~~~~~~~~~~l~~~~~dg  315 (685)
                      .       .  ..-.+++  ++++.|+.+..++.|.++|..+.+....+...      ..++.+.|. +|.+.+....++
T Consensus       134 ~-------~--~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~  201 (268)
T 3nok_A          134 Y-------S--GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSS  201 (268)
T ss_dssp             C-------S--SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCS
T ss_pred             C-------C--CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCC
Confidence            2       1  2223455  45677777777899999999999988887653      244566766 676555555688


Q ss_pred             eEEEEEcCCCeeEEEEecC-------------CCCeEEEEEcCCCCEEEEEe
Q 005656          316 VIRLFDVVALRMVRKFEGH-------------TDRITDFCFSEDGKWLLSSG  354 (685)
Q Consensus       316 ~I~i~d~~~~~~~~~~~~h-------------~~~I~~l~~spdg~~l~s~s  354 (685)
                      .|.+.|..+++.+..+.-.             ....+.|+|+|+++.|+..+
T Consensus       202 ~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          202 DVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             eEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            9999999999999888632             13578999999776555554

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.62  E-value=1.4e-06  Score=96.93  Aligned_cols=281  Identities=10%  Similarity=-0.001  Sum_probs=153.1

Q ss_pred             EEEEcc-CCCCEEEEEeCCC-----------cEEEEeCCCCeee--EEeecccccCeeEEEEeCCCcEEEEecC-CCcEE
Q 005656            7 ALAFSS-DGQPLLASGASSG-----------VISIWNLEKRRLQ--SVIREAHDNAIISLHFFANEPVLMSASA-DNSIK   71 (685)
Q Consensus         7 ~l~fsp-dg~~~latg~~dg-----------~I~vwd~~~~~~~--~~~~~~h~~~V~~l~~sp~~~~l~s~s~-D~~v~   71 (685)
                      ++++.+ +|+ +++.|+.++           .+.+||..+++..  ..+...+.....++++..++++++.|+. ++.+.
T Consensus       190 ~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~  268 (656)
T 1k3i_A          190 AAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS  268 (656)
T ss_dssp             EEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred             eEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceE
Confidence            556777 787 888887543           5889999887643  2332234444456788899999999985 45788


Q ss_pred             EEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEe-CC-----CceEEEEeecCceeeEechhhHHHHHhhcccc
Q 005656           72 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG-QD-----RAFRLFSVIQDQQSRELSQRHVAKRARKLKMK  145 (685)
Q Consensus        72 iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s-~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  145 (685)
                      +||..+..  +..+..... ...-.+++..++|+.++.|+ .+     ..+.+||..+++-... ...            
T Consensus       269 ~yd~~t~~--W~~~~~~~~-~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~-~~~------------  332 (656)
T 1k3i_A          269 LYDSSSDS--WIPGPDMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL-PNA------------  332 (656)
T ss_dssp             EEEGGGTE--EEECCCCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEE-TTS------------
T ss_pred             EecCcCCc--eeECCCCCc-cccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeC-CCc------------
Confidence            88877642  122211111 11223456667899888888 34     4678888765542211 000            


Q ss_pred             ccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecC--
Q 005656          146 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG--  223 (685)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d--  223 (685)
                          ...|..                                            ....   ...+..++...++|+.+  
T Consensus       333 ----~~~p~~--------------------------------------------~~~~---~~~~~~~~~iyv~Gg~~g~  361 (656)
T 1k3i_A          333 ----KVNPML--------------------------------------------TADK---QGLYRSDNHAWLFGWKKGS  361 (656)
T ss_dssp             ----CSGGGC--------------------------------------------CCCT---TGGGTTTCSCCEEECGGGC
T ss_pred             ----cccccc--------------------------------------------cccc---cceeecCCceEEEECCCCc
Confidence                000000                                            0000   00111223333333333  


Q ss_pred             -------CcEEEEECCCCcccccccccccc-ccCCCCcCEEEEEEcC-CCCEEEEEECCC-----------eEEEEECCC
Q 005656          224 -------GWIERFNLQSGISRGSYLDMSER-SNYAHNGEVVGVACDS-TNTLMISAGYHG-----------DIKVWDFKG  283 (685)
Q Consensus       224 -------g~i~~~d~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~~-~~~~l~s~s~dg-----------~i~iwd~~~  283 (685)
                             ..+..||..+............. ........-.++.+.. +++.++.|+.++           .|.+||..+
T Consensus       362 ~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~  441 (656)
T 1k3i_A          362 VFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGT  441 (656)
T ss_dssp             EEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTS
T ss_pred             EEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCC
Confidence                   35778888776543221100000 0000111223444443 567777777532           678888877


Q ss_pred             CceEEEe--ecC--CceeEEEEeecCCEEEEEeCC-----------CeEEEEEcCCCeeEEE--EecCCCCeEEEEEcCC
Q 005656          284 RDLKSRW--EVG--CSLVKIVYHRVNGLLATVADD-----------LVIRLFDVVALRMVRK--FEGHTDRITDFCFSED  346 (685)
Q Consensus       284 ~~~~~~~--~~~--~~i~~~~~~~~~~~l~~~~~d-----------g~I~i~d~~~~~~~~~--~~~h~~~I~~l~~spd  346 (685)
                      .......  ..+  ..-.+++..|+++++++|+.+           ..+.+||..+.+-...  +...........+.||
T Consensus       442 ~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~d  521 (656)
T 1k3i_A          442 SPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPD  521 (656)
T ss_dssp             CCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTT
T ss_pred             CCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCC
Confidence            6654432  222  223455677899999998854           4689999987653321  1112222344567799


Q ss_pred             CCEEEEEeC
Q 005656          347 GKWLLSSGM  355 (685)
Q Consensus       347 g~~l~s~s~  355 (685)
                      |+.++.|+.
T Consensus       522 g~v~v~GG~  530 (656)
T 1k3i_A          522 GRVFNGGGG  530 (656)
T ss_dssp             SCEEEEECC
T ss_pred             cEEEecCCC
Confidence            999999985

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.61  E-value=0.0014  Score=71.47  Aligned_cols=151  Identities=7%  Similarity=-0.084  Sum_probs=93.4

Q ss_pred             EEEEEEcCCCCEEEEEE-CCCeEEEEECCCCceEEEeecC-CceeEEEEeecCC-EEEEEeCCCeEEEEEcCCCeeEEEE
Q 005656          255 VVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNG-LLATVADDLVIRLFDVVALRMVRKF  331 (685)
Q Consensus       255 v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~-~l~~~~~dg~I~i~d~~~~~~~~~~  331 (685)
                      +.+++|++.+..|+.+. ..+.|+.++.........+... .....+++.+.++ ++++-...+.|.+.++........+
T Consensus       351 ~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~  430 (619)
T 3s94_A          351 AIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILI  430 (619)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred             cEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEE
Confidence            45666666544444443 4566777776654333333222 4567889987555 5555556789999998755332223


Q ss_pred             ecCCCCeEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCceeeEEee-c-cceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656          332 EGHTDRITDFCFSEDGKWLLSSGM--DGSLRIWDVILARQIDAIHV-D-VSITALSLSPNMDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       332 ~~h~~~I~~l~~spdg~~l~s~s~--Dg~I~iwd~~~~~~i~~~~~-~-~~v~~v~~spdg~~Lat~~~d~~~I~lW~~  406 (685)
                      ...-....++++.|...+|..+..  .+.|...++.. .....+.. . ...+.+++++++..|+.+....+.|...+.
T Consensus       431 ~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG-~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~  508 (619)
T 3s94_A          431 SEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDG-SDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNT  508 (619)
T ss_dssp             CTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEES
T ss_pred             ECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCC-CccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEec
Confidence            334467899999997555555542  35676666653 33333322 2 238899999998889888776667777764

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.61  E-value=1.8e-05  Score=82.78  Aligned_cols=194  Identities=9%  Similarity=0.049  Sum_probs=117.4

Q ss_pred             CCCeEEEEEccCCCEEEEEecC-C----cEEEEECCCCccc--cccccccccccCCCCcCEEEEEEcC-CCCEEEEEECC
Q 005656          202 PTAVKACTISACGNFAVLGTAG-G----WIERFNLQSGISR--GSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYH  273 (685)
Q Consensus       202 ~~~v~~~~~s~~g~~l~~g~~d-g----~i~~~d~~~~~~~--~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~d  273 (685)
                      ......++++++|+++++.... +    .+.+++.. +...  ..+         .......+++++| ++.++++-..+
T Consensus       178 ~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~~~~~~l---------~~~~~p~giavdp~~g~lyv~d~~~  247 (430)
T 3tc9_A          178 LSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGFKVITEL---------TKGQNCNGAETHPINGELYFNSWNA  247 (430)
T ss_dssp             CSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTSCSEEEE---------EECSSCCCEEECTTTCCEEEEETTT
T ss_pred             CCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cceeeeeee---------ccCCCceEEEEeCCCCEEEEEECCC
Confidence            3457899999999977666542 2    34444432 2221  111         1123356788999 66666665577


Q ss_pred             CeEEEEECCCCceEEEeec--CCceeEEEEeecCCEEEE-EeCCCeEEEEEcCC--Cee--EEEEecC------------
Q 005656          274 GDIKVWDFKGRDLKSRWEV--GCSLVKIVYHRVNGLLAT-VADDLVIRLFDVVA--LRM--VRKFEGH------------  334 (685)
Q Consensus       274 g~i~iwd~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~-~~~dg~I~i~d~~~--~~~--~~~~~~h------------  334 (685)
                      +.|..++..++........  ......++++|++++|++ -...+.|..++...  ++.  +..+.+.            
T Consensus       248 ~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~  327 (430)
T 3tc9_A          248 GQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGK  327 (430)
T ss_dssp             TEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGG
T ss_pred             CEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCc
Confidence            8999999987765333322  245778999999995544 45678999988763  222  2223221            


Q ss_pred             ---CCCeE-EEEEc--------CCCCEEEEEeCCCcEEEEEcCCCceeeEEee---------cc---------ceEEEEE
Q 005656          335 ---TDRIT-DFCFS--------EDGKWLLSSGMDGSLRIWDVILARQIDAIHV---------DV---------SITALSL  384 (685)
Q Consensus       335 ---~~~I~-~l~~s--------pdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~---------~~---------~v~~v~~  384 (685)
                         -.... .++..        ++|.+.++-...+.|+.++ .+|........         ..         ....+++
T Consensus       328 ~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giav  406 (430)
T 3tc9_A          328 KARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVY  406 (430)
T ss_dssp             GCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEE
T ss_pred             ceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEE
Confidence               11233 45553        3455555555677899988 56654433321         11         3789999


Q ss_pred             cCCCCeEEEEEeCCCeEEEEEc
Q 005656          385 SPNMDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       385 spdg~~Lat~~~d~~~I~lW~~  406 (685)
                      +|++..|+++....+.|+.++.
T Consensus       407 d~~~g~lyVaD~~n~rIr~i~~  428 (430)
T 3tc9_A          407 DEERECFFIGDRENRRIRKIGY  428 (430)
T ss_dssp             ETTTTEEEEEEGGGTEEEEEEE
T ss_pred             ECCCCEEEEEECCCCeEEEEcc
Confidence            9976666666655557887753

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.60  E-value=0.0012  Score=77.31  Aligned_cols=367  Identities=13%  Similarity=0.102  Sum_probs=195.3

Q ss_pred             CCcEEEEEEccCC-----CCEEEEEeC-CCcEEEEeCCCCeeeEEeecccccCeeEEEEe--CCCcEEEEecCCCcEEEE
Q 005656            2 RGAVTALAFSSDG-----QPLLASGAS-SGVISIWNLEKRRLQSVIREAHDNAIISLHFF--ANEPVLMSASADNSIKMW   73 (685)
Q Consensus         2 ~~~V~~l~fspdg-----~~~latg~~-dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~s--p~~~~l~s~s~D~~v~iW   73 (685)
                      .+.|+|+++.|.+     ..++|+|.. |++|+|+++.+.+.+....-+-.....++.+.  ....+|..|-.||.+.-+
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~  632 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF  632 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence            4679999998643     248999996 99999999998666544332222334444443  244688999999999888


Q ss_pred             EecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCc
Q 005656           74 IFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKP  153 (685)
Q Consensus        74 d~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (685)
                      .++..++...-.+...--..++.-..|...|..-+.+..++...++.-. ++..  +                ..+...+
T Consensus       633 ~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~--~----------------s~l~~~~  693 (1158)
T 3ei3_A          633 GLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLV--F----------------SNVNLKE  693 (1158)
T ss_dssp             EECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEE--E----------------EEBSSSC
T ss_pred             EEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceE--E----------------eccChHH
Confidence            7775443322221111124466555554444433334445554444322 1111  1                0111111


Q ss_pred             eeeeecccccccCC-cceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecC---------
Q 005656          154 VIAFDCAEIRERDW-CNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG---------  223 (685)
Q Consensus       154 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d---------  223 (685)
                      +..+++-.  .... ..++.+.  +..+++..+.+..  +...... .-...++.++++|..+.+++++.+         
T Consensus       694 v~~~~~F~--se~~~~g~v~~~--~~~LrI~~i~~~~--~~~~~~i-pL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~  766 (1158)
T 3ei3_A          694 VNYMCPLN--SDGYPDSLALAN--NSTLTIGTIDEIQ--KLHIRTV-PLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG  766 (1158)
T ss_dssp             CCEEEEEC--CSSSTTEEEEEC--SSCEEEEEECCSS--SEEEEEE-ECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSS
T ss_pred             hceEeccC--cccCCCcEEEEc--CCceEEEEecccC--CeeEEEE-eCCCCceEEEEcCCCCEEEEEEEeccccccccc
Confidence            11111111  1111 2233222  2336666654321  1111111 223567888888877766655422         


Q ss_pred             ----------------------------------------CcEEEEECCCCccccccccccccccCCCCcCEEEEEE---
Q 005656          224 ----------------------------------------GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC---  260 (685)
Q Consensus       224 ----------------------------------------g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---  260 (685)
                                                              +.|+++|..+.+....+.       ......+.+++.   
T Consensus       767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~-------l~~nE~~~sv~~v~~  839 (1158)
T 3ei3_A          767 TTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQ-------FLQNEYALSLVSCKL  839 (1158)
T ss_dssp             EEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEE-------CCTTEEEEEEEEECC
T ss_pred             cchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEe-------CCCCcceEEEEEEEE
Confidence                                                    124455554444333221       122334445443   


Q ss_pred             cCC-CCEEEEEE----------CCCeEEEEECCCCceE--EEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCee
Q 005656          261 DST-NTLMISAG----------YHGDIKVWDFKGRDLK--SRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM  327 (685)
Q Consensus       261 ~~~-~~~l~s~s----------~dg~i~iwd~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~  327 (685)
                      ..+ ..+++.|.          ..|.|.+|++..+++.  ......+++++++-- +| +|++|- ..+|++|++...+.
T Consensus       840 ~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~  916 (1158)
T 3ei3_A          840 GKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLASI-NSTVRLYEWTTEKE  916 (1158)
T ss_dssp             TTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TT-EEEEEE-TTEEEEEEECTTSC
T ss_pred             ccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CC-EEEEEc-CCEEEEEECCCCce
Confidence            322 46787776          3478999998755433  344456888887755 34 444443 47899999987655


Q ss_pred             EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc--CCCceeeEEeec--cceEEEEEcCCCCeEEEEEeCCCeEEE
Q 005656          328 VRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV--ILARQIDAIHVD--VSITALSLSPNMDVLATAHVDQNGVYL  403 (685)
Q Consensus       328 ~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~--~~~~~i~~~~~~--~~v~~v~~spdg~~Lat~~~d~~~I~l  403 (685)
                      ++.-..+-..|..+.....+++++.|..-..|.++..  ..+++...-+..  ..++++.|-.++ .++.+..++ .|++
T Consensus       917 L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~-t~l~aD~~g-Nl~v  994 (1158)
T 3ei3_A          917 LRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD-NFLGAENAF-NLFV  994 (1158)
T ss_dssp             EEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETT-EEEEEETTS-EEEE
T ss_pred             EEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccC-cEEEEcCCC-cEEE
Confidence            4421112222333333335788999987666766544  444444433332  238888887554 566677676 6777


Q ss_pred             EEc
Q 005656          404 WVN  406 (685)
Q Consensus       404 W~~  406 (685)
                      ...
T Consensus       995 l~~  997 (1158)
T 3ei3_A          995 CQK  997 (1158)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            653

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.60  E-value=5.1e-05  Score=78.09  Aligned_cols=252  Identities=12%  Similarity=-0.033  Sum_probs=149.7

Q ss_pred             EEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCc-EEEEecCCCcEEEEEecCCCCCCce
Q 005656            6 TALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRL   84 (685)
Q Consensus         6 ~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~~   84 (685)
                      +|.+..+.+  +|+.+. ...|+.+++.+......+.  ....+..++|.+.+. ++++-...+.|..++.+..    ..
T Consensus        80 ~C~~~~~~~--~l~~~~-~~~I~~i~~~~~~~~~~~~--~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~----~~  150 (386)
T 3v65_B           80 SCKALGPEP--VLLFAN-RIDIRQVLPHRSEYTLLLN--NLENAIALDFHHRRELVFWSDVTLDRILRANLNGS----NV  150 (386)
T ss_dssp             CEEECSSCC--EEEEEC-BSCEEEECTTSCCCEEEEC--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC----CE
T ss_pred             eECCccccc--eeEeec-CccceeeccCCCcEEEEec--CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCC----Cc
Confidence            344444432  444433 3678999988766554443  334578999997555 5555556778888877654    22


Q ss_pred             eEecccCCCCCeEEEEecCCCEEEEE-eCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccccc
Q 005656           85 LRFRSGHSAPPLCIRFYANGRHILSA-GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIR  163 (685)
Q Consensus        85 ~~~~~~h~~~v~~i~~~~~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (685)
                      ..........+..+++.+.+..|+.+ ...+.|.+.++........+.                                
T Consensus       151 ~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~--------------------------------  198 (386)
T 3v65_B          151 EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW--------------------------------  198 (386)
T ss_dssp             EEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEEC--------------------------------
T ss_pred             EEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeec--------------------------------
Confidence            22222233456788888765555444 445666665543221111000                                


Q ss_pred             ccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec-C-CcEEEEECCCCccccccc
Q 005656          164 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA-G-GWIERFNLQSGISRGSYL  241 (685)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-d-g~i~~~d~~~~~~~~~~~  241 (685)
                                                          ........+++.|.+..++.... . +.|+.+++..........
T Consensus       199 ------------------------------------~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~  242 (386)
T 3v65_B          199 ------------------------------------QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD  242 (386)
T ss_dssp             ------------------------------------SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC
T ss_pred             ------------------------------------CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEE
Confidence                                                12345688999987776666543 3 689999886543322211


Q ss_pred             cccccccCCCCcCEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCceEEEeec-CCceeEEEEeecCCEEEEEeCCCeEEE
Q 005656          242 DMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRL  319 (685)
Q Consensus       242 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~I~i  319 (685)
                              ..-....+++++|++..|+.+. ..+.|..+|+........+.. ......+++ ..+.++++-...+.|..
T Consensus       243 --------~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~  313 (386)
T 3v65_B          243 --------THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINS  313 (386)
T ss_dssp             --------SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEE
T ss_pred             --------CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEE
Confidence                    2234578999998776666554 567899999875443333322 234566777 44556666667788999


Q ss_pred             EEcCCCeeEEEEecCCCCeEEEEE
Q 005656          320 FDVVALRMVRKFEGHTDRITDFCF  343 (685)
Q Consensus       320 ~d~~~~~~~~~~~~h~~~I~~l~~  343 (685)
                      +|..+++.+..+........++++
T Consensus       314 ~~~~~G~~~~~i~~~~~~p~gi~v  337 (386)
T 3v65_B          314 ANKFTGKNQEIIRNKLHFPMDIHT  337 (386)
T ss_dssp             EETTTCCSCEEEECSCSCCCCEEE
T ss_pred             EECCCCcceEEEccCCCCCceEEE
Confidence            987777777766654444555554

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.57  E-value=0.00028  Score=70.38  Aligned_cols=238  Identities=13%  Similarity=0.016  Sum_probs=142.5

Q ss_pred             EEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCc-EEEEecCCCcEEEEEecCCCCCCceeEecccCCCCC
Q 005656           17 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP   95 (685)
Q Consensus        17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v   95 (685)
                      +|+.+. ...|+..|+.+......+.  ....+.+++|.+.+. +.++-..++.|..++.+...............-..+
T Consensus         3 ~ll~~~-~~~I~~i~~~~~~~~~~~~--~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p   79 (316)
T 1ijq_A            3 YLFFTN-RHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP   79 (316)
T ss_dssp             EEEEEC-BSSEEEEETTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred             EEEEEC-CCeEEEEECCCcceEehhc--CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCc
Confidence            344433 3569999999877665553  345678999998655 555555678888888765210001111222223456


Q ss_pred             eEEEEecCCCEEE-EEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEE
Q 005656           96 LCIRFYANGRHIL-SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH  174 (685)
Q Consensus        96 ~~i~~~~~~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (685)
                      ..+++.+.+..|+ +-...+.|.+++.........+.                                           
T Consensus        80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~-------------------------------------------  116 (316)
T 1ijq_A           80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-------------------------------------------  116 (316)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-------------------------------------------
T ss_pred             CEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEE-------------------------------------------
Confidence            8899987555554 44556788887764322111100                                           


Q ss_pred             cCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecC--CcEEEEECCCCccccccccccccccCCCC
Q 005656          175 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG--GWIERFNLQSGISRGSYLDMSERSNYAHN  252 (685)
Q Consensus       175 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d--g~i~~~d~~~~~~~~~~~~~~~~~~~~h~  252 (685)
                                               ........+++.|.+..++.....  +.|..+++.... ...+..       ..-
T Consensus       117 -------------------------~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~~~-------~~~  163 (316)
T 1ijq_A          117 -------------------------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVT-------ENI  163 (316)
T ss_dssp             -------------------------CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEEC-------SSC
T ss_pred             -------------------------CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEEEE-------CCC
Confidence                                     112356789999877766665543  689988885432 222210       223


Q ss_pred             cCEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCceEEEeec---CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeE
Q 005656          253 GEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWEV---GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMV  328 (685)
Q Consensus       253 ~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~  328 (685)
                      ....++++++++..|+.+. ..+.|..+|+...........   ......+++. .+.++++-...+.|..+|..+++.+
T Consensus       164 ~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~  242 (316)
T 1ijq_A          164 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV  242 (316)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred             CCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcce
Confidence            4678999999877776665 567899999975433322222   1345667774 4556666667789999998888766


Q ss_pred             EEEecC
Q 005656          329 RKFEGH  334 (685)
Q Consensus       329 ~~~~~h  334 (685)
                      ..+...
T Consensus       243 ~~i~~~  248 (316)
T 1ijq_A          243 NLLAEN  248 (316)
T ss_dssp             EEEECS
T ss_pred             EEEecC
Confidence            666533

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.56  E-value=9.9e-05  Score=70.20  Aligned_cols=213  Identities=11%  Similarity=0.127  Sum_probs=131.8

Q ss_pred             CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCC
Q 005656            3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP   82 (685)
Q Consensus         3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~   82 (685)
                      +.+..++|+|++..+.++...++.|...|.. ++.+..+..+-....-.+++.+++.++++.-.++.+.+++++.... .
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~-i  104 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSE-V  104 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCC-E
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCe-e
Confidence            4689999999876577778889999999998 8877777533335678899999998877776778898888876532 1


Q ss_pred             ceeEec------ccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecC---ceeeEechhhHHHHHhhccccccccccCc
Q 005656           83 RLLRFR------SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQD---QQSRELSQRHVAKRARKLKMKEEELKLKP  153 (685)
Q Consensus        83 ~~~~~~------~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (685)
                      ..+...      .........++|.|.++.|+++.......+|.+..-   ...........                  
T Consensus       105 ~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~------------------  166 (255)
T 3qqz_A          105 KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKAL------------------  166 (255)
T ss_dssp             EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHH------------------
T ss_pred             eeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhh------------------
Confidence            111111      123455789999999888888777666777776510   00000000000                  


Q ss_pred             eeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEECC
Q 005656          154 VIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGGWIERFNLQ  232 (685)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~~~d~~  232 (685)
                                                               ..  ......+.+++++|.. ++++....+..+..+|.+
T Consensus       167 -----------------------------------------~~--~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~  203 (255)
T 3qqz_A          167 -----------------------------------------QR--QFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV  203 (255)
T ss_dssp             -----------------------------------------HH--TCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             -----------------------------------------cc--ccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC
Confidence                                                     00  0112346788888854 555666667788888876


Q ss_pred             CCcccccccccc-ccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 005656          233 SGISRGSYLDMS-ERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD  280 (685)
Q Consensus       233 ~~~~~~~~~~~~-~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd  280 (685)
                      .. .+..+.-.. ......--..--+|+++++|+..++ +..+.++.+.
T Consensus       204 g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~  250 (255)
T 3qqz_A          204 GE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFT  250 (255)
T ss_dssp             CC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred             CC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence            44 333332100 0000011236789999999985554 6666666554

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.55  E-value=2.7e-05  Score=74.15  Aligned_cols=196  Identities=12%  Similarity=0.108  Sum_probs=132.3

Q ss_pred             CCCCCCeEEEEEccCCCEE-EEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEE
Q 005656          199 PENPTAVKACTISACGNFA-VLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIK  277 (685)
Q Consensus       199 ~~~~~~v~~~~~s~~g~~l-~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~  277 (685)
                      ++....+..++++|+++.+ ++...++.|..+|.+ +.....+.-       .-....-+|++.+++.++++.-.++.+.
T Consensus        23 ~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l-------~g~~D~EGIa~~~~g~~~vs~E~~~~l~   94 (255)
T 3qqz_A           23 AGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL-------DFVKDLETIEYIGDNQFVISDERDYAIY   94 (255)
T ss_dssp             TTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEEC-------SSCSSEEEEEECSTTEEEEEETTTTEEE
T ss_pred             CCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEec-------CCCCChHHeEEeCCCEEEEEECCCCcEE
Confidence            3555679999999977655 557788999999998 766655421       2235678899998888777766778899


Q ss_pred             EEECCCCce---EEEee-------cCCceeEEEEeecCCEEEEEeCCCeEEEEEcC---CCeeEEEEe-------cCCCC
Q 005656          278 VWDFKGRDL---KSRWE-------VGCSLVKIVYHRVNGLLATVADDLVIRLFDVV---ALRMVRKFE-------GHTDR  337 (685)
Q Consensus       278 iwd~~~~~~---~~~~~-------~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~---~~~~~~~~~-------~h~~~  337 (685)
                      ++++.....   .....       .......++|+|.++.|+++.......+|.+.   ....+..+.       .+...
T Consensus        95 ~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d  174 (255)
T 3qqz_A           95 VISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDD  174 (255)
T ss_dssp             EEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSC
T ss_pred             EEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCC
Confidence            998765432   22222       12446899999999877777765555555543   111122221       13346


Q ss_pred             eEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCceeeEEeecc----------ceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656          338 ITDFCFSEDG-KWLLSSGMDGSLRIWDVILARQIDAIHVDV----------SITALSLSPNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       338 I~~l~~spdg-~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~----------~v~~v~~spdg~~Lat~~~d~~~I~lW~  405 (685)
                      +.++++.|.. ++++....++.|.++|.. |+.+..+....          ..-.|+|.++|+ |+.++ ..|.++.+.
T Consensus       175 ~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvs-E~n~~y~f~  250 (255)
T 3qqz_A          175 VSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVS-EPNRFYRFT  250 (255)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEE-TTTEEEEEE
T ss_pred             ceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEc-CCceEEEEE
Confidence            7899999954 556666677889999955 66777665442          378999999998 44445 446777775

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.52  E-value=1e-05  Score=91.24  Aligned_cols=114  Identities=11%  Similarity=0.085  Sum_probs=69.7

Q ss_pred             cEEEEEEc-cCCCCEEEE-EeCCC----cEEEEeCCCC-eeeEE-eecccccCeeEEEEeCCCcEEEEecCC-----CcE
Q 005656            4 AVTALAFS-SDGQPLLAS-GASSG----VISIWNLEKR-RLQSV-IREAHDNAIISLHFFANEPVLMSASAD-----NSI   70 (685)
Q Consensus         4 ~V~~l~fs-pdg~~~lat-g~~dg----~I~vwd~~~~-~~~~~-~~~~h~~~V~~l~~sp~~~~l~s~s~D-----~~v   70 (685)
                      .+.+.+|| |||+ +||- .+.+|    .|+++|+.++ +.+.. +.    ....+++|+|||+.|+....|     ..|
T Consensus       175 ~~~~~~~S~PDG~-~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~----~~~~~~~WspDg~~l~y~~~d~~~~~~~v  249 (751)
T 2xe4_A          175 DVMEVKPAPPEHD-LVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS----GTNGEIVWGPDHTSLFYVTKDETLRENKV  249 (751)
T ss_dssp             EEEEEEECTTTTC-EEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE----EECSCCEECSSTTEEEEEEECTTCCEEEE
T ss_pred             EEeeeEecCCCCC-EEEEEEeCCCCceEEEEEEECCCCCEeCCcccc----CceeeEEEecCCCEEEEEEECCCCCCCEE
Confidence            47789999 9999 5554 33333    4999999998 63321 21    224578999999877776654     245


Q ss_pred             EEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCC---CceEEEEeec
Q 005656           71 KMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD---RAFRLFSVIQ  123 (685)
Q Consensus        71 ~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d---g~i~vwd~~~  123 (685)
                      .++++.++......+... .+......+.|+|||++|+..+.+   ..|.++|+.+
T Consensus       250 ~~~~lgt~~~~~~lv~~~-~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~  304 (751)
T 2xe4_A          250 WRHVMGKLQSEDVCLYEE-HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK  304 (751)
T ss_dssp             EEEETTSCGGGCEEEEEC-CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred             EEEECCCCchhcEEEEec-CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence            556554432111222221 222345678999999988876533   2455555543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.51  E-value=0.00018  Score=72.17  Aligned_cols=272  Identities=10%  Similarity=0.046  Sum_probs=148.2

Q ss_pred             CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeec---ccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCC
Q 005656            3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIRE---AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD   79 (685)
Q Consensus         3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~---~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~   79 (685)
                      ..+.+|.|.+++. .+|+| ..|.| +...+.++.-..+..   .....+.++.|.+ +..++ ++.++.|  +.-..+.
T Consensus        36 ~~~~~v~~~~~~~-~~~~G-~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i--~~S~DgG  108 (327)
T 2xbg_A           36 ATILDMSFIDRHH-GWLVG-VNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIM--LHTTDGG  108 (327)
T ss_dssp             SCEEEEEESSSSC-EEEEE-TTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEE--EEESSTT
T ss_pred             CcEEEEEECCCCc-EEEEc-CCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeE--EEECCCC
Confidence            4688999988777 67755 46655 344444432222210   1245688999986 44444 4455644  3323322


Q ss_pred             CCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeec-CceeeEechhhHHHHHhhccccccccccCceeeee
Q 005656           80 GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ-DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD  158 (685)
Q Consensus        80 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (685)
                      ...+.+.....+...+..+.+.+++..++.+ .+|.|  |.... ++.-....                           
T Consensus       109 ~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v--~~S~DgG~tW~~~~---------------------------  158 (327)
T 2xbg_A          109 QSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAI--YRTKDSGKNWQALV---------------------------  158 (327)
T ss_dssp             SSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCE--EEESSTTSSEEEEE---------------------------
T ss_pred             CCceECccccCCCCCeEEEEEECCCCEEEEe-CCccE--EEEcCCCCCCEEee---------------------------
Confidence            3333332221233456778877776555444 45543  22221 21111100                           


Q ss_pred             cccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccc
Q 005656          159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG  238 (685)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~  238 (685)
                                                              ......+..+++.+++.+++++.. |.++.-+-..+..-.
T Consensus       159 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~g~~-G~~~~S~d~gG~tW~  197 (327)
T 2xbg_A          159 ----------------------------------------QEAIGVMRNLNRSPSGEYVAVSSR-GSFYSTWEPGQTAWE  197 (327)
T ss_dssp             ----------------------------------------CSCCCCEEEEEECTTSCEEEEETT-SSEEEEECTTCSSCE
T ss_pred             ----------------------------------------cCCCcceEEEEEcCCCcEEEEECC-CcEEEEeCCCCCcee
Confidence                                                    022345788899998888777654 444443211122111


Q ss_pred             ccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec-----CCceeEEEEeecCCEEEEEeC
Q 005656          239 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV-----GCSLVKIVYHRVNGLLATVAD  313 (685)
Q Consensus       239 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~  313 (685)
                      ...       ......+..+.++++++.+ .++.+|.+++.+...++.-..+..     ...+..+.+.+++.+++++. 
T Consensus       198 ~~~-------~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-  268 (327)
T 2xbg_A          198 PHN-------RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-  268 (327)
T ss_dssp             EEE-------CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-
T ss_pred             ECC-------CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-
Confidence            111       1345678899999988755 455678887775333332222221     23578888888777766655 


Q ss_pred             CCeEEEEEcCCCeeEEEEec---CCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005656          314 DLVIRLFDVVALRMVRKFEG---HTDRITDFCFSEDGKWLLSSGMDGSLRIWD  363 (685)
Q Consensus       314 dg~I~i~d~~~~~~~~~~~~---h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd  363 (685)
                      ++.| .+..+.++.-..+..   +...+.++.|.++++ +++++.+|.|.-++
T Consensus       269 ~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          269 AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV  319 (327)
T ss_dssp             TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred             CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence            6666 344555554444432   345688899976554 66667789777665

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.50  E-value=0.0021  Score=70.23  Aligned_cols=382  Identities=11%  Similarity=-0.026  Sum_probs=190.0

Q ss_pred             EEEEEccCCCCEEEEEe-CCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEe-cCCCcEEEEEecCCCCCCc
Q 005656            6 TALAFSSDGQPLLASGA-SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA-SADNSIKMWIFDTTDGDPR   83 (685)
Q Consensus         6 ~~l~fspdg~~~latg~-~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~-s~D~~v~iWd~~~~~~~~~   83 (685)
                      ..|++.|.+..++.|-. ..+.|...+++......... ..-.....|++.+++..|+.+ +..+.|...+++...  .+
T Consensus       130 ~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~-~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~--~~  206 (619)
T 3s94_A          130 RAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN-SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN--RQ  206 (619)
T ss_dssp             CCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCE--EC
T ss_pred             ceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEe-CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCc--cE
Confidence            46778776442444431 24567666765443333332 234567899999976655544 445667666665421  11


Q ss_pred             eeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhh----------HHHHHhh---cc---cccc
Q 005656           84 LLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRH----------VAKRARK---LK---MKEE  147 (685)
Q Consensus        84 ~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~----------~~~~~~~---~~---~~~~  147 (685)
                      .  ...+....+..+++..+ ..+++-...+.|...|..+++....+....          ...+...   ..   ....
T Consensus       207 ~--~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs  283 (619)
T 3s94_A          207 A--VVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCS  283 (619)
T ss_dssp             -----------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCS
T ss_pred             E--EEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCccc
Confidence            1  11222334467777655 334444456788888887776544432110          0000000   00   0000


Q ss_pred             cccc--C---ceeeeecccccc-cC------CcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCC
Q 005656          148 ELKL--K---PVIAFDCAEIRE-RD------WCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN  215 (685)
Q Consensus       148 ~~~~--~---~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  215 (685)
                      .+.+  +   ...+..+..... .+      ...-+..-.....++..++.........+ +. ..-..+.++++.+.++
T Consensus       284 ~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~-~~-~~l~~~~~ld~d~~~~  361 (619)
T 3s94_A          284 HLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVL-QL-EDIRHAIAIDYDPVEG  361 (619)
T ss_dssp             SEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEESSCEEEEESSSTTCCCEEC-CC-SCCSSEEEEEEETTTT
T ss_pred             ceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEcccceEEEecCCCccceeEE-ec-cccCccEEEEEEcCCC
Confidence            0000  0   000000011100 00      00111111122344444444322211111 11 2234578899998666


Q ss_pred             EEEEEe-cCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEE-EEECCCeEEEEECCCCceEEEeec-
Q 005656          216 FAVLGT-AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMI-SAGYHGDIKVWDFKGRDLKSRWEV-  292 (685)
Q Consensus       216 ~l~~g~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~-  292 (685)
                      .++... ..+.|+.+++..........        ..-....+++++..+..|+ +-+..+.|.+.++........... 
T Consensus       362 ~ly~sD~~~~~I~r~~~~g~~~~~v~~--------~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~  433 (619)
T 3s94_A          362 YIYWTDDEVRAIRRSFIDGSGSQFVVT--------AQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISED  433 (619)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEEEC--------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTT
T ss_pred             eEEEEeCCCCeEEEEEcCCCccEEEEE--------CCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECC
Confidence            666554 57889999987643322211        2234567899997555454 445678899999876543222222 


Q ss_pred             CCceeEEEEeecCCEEEEEeC--CCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCce
Q 005656          293 GCSLVKIVYHRVNGLLATVAD--DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG-MDGSLRIWDVILARQ  369 (685)
Q Consensus       293 ~~~i~~~~~~~~~~~l~~~~~--dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s-~Dg~I~iwd~~~~~~  369 (685)
                      -.....+++.|....|+.+..  .+.|...+++...........-...+.+++++++..|..+. ..+.|..+++.....
T Consensus       434 l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~  513 (619)
T 3s94_A          434 LEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGR  513 (619)
T ss_dssp             CCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC
T ss_pred             CCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCce
Confidence            256789999997665555543  36777777764333222333456789999999777777665 456788888764433


Q ss_pred             eeEEeec-cceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656          370 IDAIHVD-VSITALSLSPNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       370 i~~~~~~-~~v~~v~~spdg~~Lat~~~d~~~I~lW~  405 (685)
                      ...+... ....+++..  +.+|+.+......|+.-+
T Consensus       514 ~~~~~~~l~~P~glav~--~~~ly~tD~~~~~I~~~~  548 (619)
T 3s94_A          514 RVLVEDKIPHIFGFTLL--GDYVYWTDWQRRSIERVH  548 (619)
T ss_dssp             EEEEECCCCSSCCEEEE--TTEEEEECTTSSCEEEEE
T ss_pred             EEEeccCCCCcEEEEEE--CCEEEEeecCCCeEEEEE
Confidence            2222211 113344443  235655544443454443

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.49  E-value=0.00037  Score=71.93  Aligned_cols=248  Identities=12%  Similarity=-0.013  Sum_probs=150.1

Q ss_pred             EEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcE-EEEecCCCcEEEEEecCCCCCCceeEecccCCCCC
Q 005656           17 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPV-LMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP   95 (685)
Q Consensus        17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~-l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v   95 (685)
                      +|+.+. ...|+..++........+.  ....+..++|.+.+.. .++-...+.|..++++..................+
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~~--~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p  161 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP  161 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEEC--SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred             eeEEec-cceeEEEccCCcceeEecc--ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence            444443 4679999998776554443  4567899999986554 45545567888887765321011222222234567


Q ss_pred             eEEEEecCCCEEE-EEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEE
Q 005656           96 LCIRFYANGRHIL-SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH  174 (685)
Q Consensus        96 ~~i~~~~~~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (685)
                      ..+++.+.+..|+ +-...+.|.+.++........+.                                           
T Consensus       162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~-------------------------------------------  198 (400)
T 3p5b_L          162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-------------------------------------------  198 (400)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEE-------------------------------------------
T ss_pred             ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEe-------------------------------------------
Confidence            8889987544444 44456677777654332111110                                           


Q ss_pred             cCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec--CCcEEEEECCCCccccccccccccccCCCC
Q 005656          175 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA--GGWIERFNLQSGISRGSYLDMSERSNYAHN  252 (685)
Q Consensus       175 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~--dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~  252 (685)
                                               ........+++.|.+.+++....  .+.|...++..........        ..-
T Consensus       199 -------------------------~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~--------~~l  245 (400)
T 3p5b_L          199 -------------------------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT--------ENI  245 (400)
T ss_dssp             -------------------------CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC--------SSC
T ss_pred             -------------------------CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE--------CCC
Confidence                                     12344678999997777766653  3789999987543322211        223


Q ss_pred             cCEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCceEEEeecC---CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeE
Q 005656          253 GEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMV  328 (685)
Q Consensus       253 ~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~  328 (685)
                      ....+|++++++..|+.+. ..+.|..+|+............   .....+++ ..+.++++-...+.|..+|..+++.+
T Consensus       246 ~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~V~~~~~~~G~~~  324 (400)
T 3p5b_L          246 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSANRLTGSDV  324 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCSEEEEESSSCCCC
T ss_pred             CceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCeEEEEEcCCCCce
Confidence            5678999998877777665 5678999998765443333321   33445666 33455566666788999998888777


Q ss_pred             EEEecCCCCeEEEEEc
Q 005656          329 RKFEGHTDRITDFCFS  344 (685)
Q Consensus       329 ~~~~~h~~~I~~l~~s  344 (685)
                      ..+........++...
T Consensus       325 ~~i~~~~~~p~~i~v~  340 (400)
T 3p5b_L          325 NLLAENLLSPEDMVLF  340 (400)
T ss_dssp             EEEECSCSCEEEEEEE
T ss_pred             EEEecCCCCCceEEEE
Confidence            7776555556666553

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.48  E-value=7.3e-05  Score=78.07  Aligned_cols=195  Identities=13%  Similarity=0.065  Sum_probs=115.5

Q ss_pred             CCCeEEEEEccCCCEEEEEecCC-----cEEEEECCCCccccccccccccccCCCCcCEEEEEEcC-CCCEEEEEECCCe
Q 005656          202 PTAVKACTISACGNFAVLGTAGG-----WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYHGD  275 (685)
Q Consensus       202 ~~~v~~~~~s~~g~~l~~g~~dg-----~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~dg~  275 (685)
                      ......++++++|+ +++....+     .+..++...+.......        ..-....+++++| ++.++++-..++.
T Consensus       181 ~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~--------~~~~~P~giavd~~~G~lyv~d~~~~~  251 (433)
T 4hw6_A          181 IGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSL--------CNARGAKTCAVHPQNGKIYYTRYHHAM  251 (433)
T ss_dssp             CSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEE--------EECSSBCCCEECTTTCCEEECBTTCSE
T ss_pred             CCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeeccccc--------cccCCCCEEEEeCCCCeEEEEECCCCE
Confidence            34578999999999 55554422     23333332211100000        1223456788999 6665555556788


Q ss_pred             EEEEECCCCceEEEe-ecC--CceeEEEEeecCCEEEEE-eCCCeEEEEEcC--CCee--EEEEecC-------------
Q 005656          276 IKVWDFKGRDLKSRW-EVG--CSLVKIVYHRVNGLLATV-ADDLVIRLFDVV--ALRM--VRKFEGH-------------  334 (685)
Q Consensus       276 i~iwd~~~~~~~~~~-~~~--~~i~~~~~~~~~~~l~~~-~~dg~I~i~d~~--~~~~--~~~~~~h-------------  334 (685)
                      |+.+|..++.....+ ...  .....++++|+++.|+++ ...+.|+.++..  ++..  ...+.+.             
T Consensus       252 V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~  331 (433)
T 4hw6_A          252 ISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTG  331 (433)
T ss_dssp             EEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGG
T ss_pred             EEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccc
Confidence            999999877662222 222  223469999999955554 456899998865  3321  1223222             


Q ss_pred             --CCCeEEEEE---------cCCCCEEEEEeCCCcEEEEEcCCCceeeEEeec------------------cceEEEEEc
Q 005656          335 --TDRITDFCF---------SEDGKWLLSSGMDGSLRIWDVILARQIDAIHVD------------------VSITALSLS  385 (685)
Q Consensus       335 --~~~I~~l~~---------spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~------------------~~v~~v~~s  385 (685)
                        -.....+++         .++|++.++-...+.|+.++ .+|.........                  .....++++
T Consensus       332 a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~-~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd  410 (433)
T 4hw6_A          332 ARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT-PEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYD  410 (433)
T ss_dssp             SBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC-TTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEE
T ss_pred             eEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC-CCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEE
Confidence              124677999         77777777767778899998 456443322110                  127889999


Q ss_pred             CCCCeEEEEEeCCCeEEEEEc
Q 005656          386 PNMDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       386 pdg~~Lat~~~d~~~I~lW~~  406 (685)
                      |....|+++....+.|+.++.
T Consensus       411 ~~~g~lyVaD~~n~rIr~i~~  431 (433)
T 4hw6_A          411 MKRKCFYIGDCDNHRVRKIAP  431 (433)
T ss_dssp             TTTTEEEEEEGGGTEEEEEEE
T ss_pred             CCCCEEEEEeCCCCEEEEEec
Confidence            544455555555457887753

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.45  E-value=0.00052  Score=68.35  Aligned_cols=194  Identities=14%  Similarity=0.048  Sum_probs=121.0

Q ss_pred             CCCeEEEEEccCCCEEEEE-ecCCcEEEEECCCC---ccccccccccccccCCCCcCEEEEEEcCCCCEEE-EEECCCeE
Q 005656          202 PTAVKACTISACGNFAVLG-TAGGWIERFNLQSG---ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMI-SAGYHGDI  276 (685)
Q Consensus       202 ~~~v~~~~~s~~g~~l~~g-~~dg~i~~~d~~~~---~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~s~dg~i  276 (685)
                      ...+..++|++.++.++.. ..++.|+.+++...   .....+..       ..-....++++++.+..|+ +-...+.|
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~-------~~~~~p~glavd~~~~~ly~~d~~~~~I  101 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-------RDIQAPDGLAVDWIHSNIYWTDSVLGTV  101 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC-------SSCSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEe-------CCCCCcCEEEEeecCCeEEEEECCCCEE
Confidence            3457889999876655554 45689999998762   22111110       1223457899987655554 44567899


Q ss_pred             EEEECCCCceEEEeec-CCceeEEEEeecCCEEEEEeCC--CeEEEEEcCCCeeEEEE-ecCCCCeEEEEEcCCCCEEEE
Q 005656          277 KVWDFKGRDLKSRWEV-GCSLVKIVYHRVNGLLATVADD--LVIRLFDVVALRMVRKF-EGHTDRITDFCFSEDGKWLLS  352 (685)
Q Consensus       277 ~iwd~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d--g~I~i~d~~~~~~~~~~-~~h~~~I~~l~~spdg~~l~s  352 (685)
                      .+++............ ......++++|.+..|+.+...  +.|..+++.. .....+ ...-...+.++++|++..|+.
T Consensus       102 ~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~~~~~P~gla~d~~~~~lY~  180 (316)
T 1ijq_A          102 SVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYW  180 (316)
T ss_dssp             EEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECSSCSCEEEEEEETTTTEEEE
T ss_pred             EEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEECCCCCceEEEEeccCCEEEE
Confidence            9999886544433332 2567899999977766555543  6888888764 333333 233456889999998777765


Q ss_pred             Ee-CCCcEEEEEcCCCceeeEE-eec---cceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656          353 SG-MDGSLRIWDVILARQIDAI-HVD---VSITALSLSPNMDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       353 ~s-~Dg~I~iwd~~~~~~i~~~-~~~---~~v~~v~~spdg~~Lat~~~d~~~I~lW~~  406 (685)
                      +. ..+.|..+|+... ....+ ...   .....+++.  +..|+.+....+.|..++.
T Consensus       181 ~D~~~~~I~~~d~dg~-~~~~~~~~~~~~~~P~giav~--~~~ly~~d~~~~~V~~~~~  236 (316)
T 1ijq_A          181 VDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANR  236 (316)
T ss_dssp             EETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEET
T ss_pred             EECCCCeEEEEecCCC-ceEEEeecCCccCCcEEEEEE--CCEEEEEECCCCeEEEEeC
Confidence            54 5678999998743 33333 221   236777774  3566666555567887763

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.42  E-value=0.00028  Score=70.30  Aligned_cols=245  Identities=10%  Similarity=0.023  Sum_probs=144.6

Q ss_pred             EEEEEeCCCcEEEEeCCCCee-eEEeecccccCeeEEEEeCCCc-EEEEecCCCcEEEEEecCCCCCCceeEecccCCCC
Q 005656           17 LLASGASSGVISIWNLEKRRL-QSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP   94 (685)
Q Consensus        17 ~latg~~dg~I~vwd~~~~~~-~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~   94 (685)
                      +|+.+. ...|+.+|+..... ...+. .....+..++|.+.+. +.++-...+.|..++.+........+   ...-..
T Consensus         6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~-~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~---~~~l~~   80 (318)
T 3sov_A            6 LLLYAN-RRDLRLVDATNGKENATIVV-GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVV---VSGLLS   80 (318)
T ss_dssp             EEEEEC-EEEEEEEETTCTTSCCEEEE-EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEE---EECCSC
T ss_pred             EEEEEc-cCeEEEEECCCCceEEEEEe-cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEE---cCCCCC
Confidence            444433 46799999987641 21221 2334577999998644 55555667788888776542111111   122345


Q ss_pred             CeEEEEecCCCEEE-EEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEE
Q 005656           95 PLCIRFYANGRHIL-SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTC  173 (685)
Q Consensus        95 v~~i~~~~~~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (685)
                      +..+++.+.+..|+ +-...+.|.++++..........                                          
T Consensus        81 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~------------------------------------------  118 (318)
T 3sov_A           81 PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW------------------------------------------  118 (318)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC------------------------------------------
T ss_pred             ccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEe------------------------------------------
Confidence            67889987544444 44456678777764322111100                                          


Q ss_pred             EcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec--CCcEEEEECCCCccccccccccccccCCC
Q 005656          174 HMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA--GGWIERFNLQSGISRGSYLDMSERSNYAH  251 (685)
Q Consensus       174 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~--dg~i~~~d~~~~~~~~~~~~~~~~~~~~h  251 (685)
                                                ........+++.|.+.+++....  .+.|..+++..... ..+..       ..
T Consensus       119 --------------------------~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~-------~~  164 (318)
T 3sov_A          119 --------------------------QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-FIIIN-------SE  164 (318)
T ss_dssp             --------------------------SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC-EEEEC-------SS
T ss_pred             --------------------------CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe-EEEEE-------CC
Confidence                                      12345678899987777766653  57899998864332 22210       12


Q ss_pred             CcCEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCceEEEee-cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEE
Q 005656          252 NGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR  329 (685)
Q Consensus       252 ~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~  329 (685)
                      -....++++++++..|+.+. ..+.|..+|+.......... .......+++. .+.++++-...+.|..++..+++..+
T Consensus       165 l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~~  243 (318)
T 3sov_A          165 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGEGLR  243 (318)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCE
T ss_pred             CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCceE
Confidence            24568999999777666654 56789999987543332222 12445566664 34555666667899999988887666


Q ss_pred             EEecCCCCeEEEEE
Q 005656          330 KFEGHTDRITDFCF  343 (685)
Q Consensus       330 ~~~~h~~~I~~l~~  343 (685)
                      .+......+.+++.
T Consensus       244 ~i~~~~~~P~~i~v  257 (318)
T 3sov_A          244 EIHSDIFSPMDIHA  257 (318)
T ss_dssp             EEECCCSSCCCEEE
T ss_pred             EEeCCCCCCcEEEE
Confidence            66544334444443

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.42  E-value=0.00032  Score=71.03  Aligned_cols=162  Identities=7%  Similarity=-0.057  Sum_probs=103.2

Q ss_pred             CeEEEEEccCCCEE-EEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE-CC-CeEEEEE
Q 005656          204 AVKACTISACGNFA-VLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YH-GDIKVWD  280 (685)
Q Consensus       204 ~v~~~~~s~~g~~l-~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~d-g~i~iwd  280 (685)
                      ....+++.+.+..+ ++-...+.|.++++..........        ..-....+++++|.+..|+.+. .. +.|..++
T Consensus       117 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~--------~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~  188 (349)
T 3v64_C          117 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW--------QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS  188 (349)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             CccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEe--------CCCCCcceEEEecCcCeEEEeccCCCCEEEEEe
Confidence            34577888755555 444556789999987543222211        2334578999999766665554 44 7888888


Q ss_pred             CCCCceEEEeec-CCceeEEEEeecCCEEEEEe-CCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCc
Q 005656          281 FKGRDLKSRWEV-GCSLVKIVYHRVNGLLATVA-DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGS  358 (685)
Q Consensus       281 ~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~-~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~  358 (685)
                      +........... -.....++++|+++.|+.+. ..+.|..+|+........+.........+++. .+...++-...+.
T Consensus       189 ~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~  267 (349)
T 3v64_C          189 MDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKS  267 (349)
T ss_dssp             TTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTE
T ss_pred             CCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCe
Confidence            875443332222 24578899998777666554 46789999987543333333445567788883 4444555556778


Q ss_pred             EEEEEcCCCceeeEEe
Q 005656          359 LRIWDVILARQIDAIH  374 (685)
Q Consensus       359 I~iwd~~~~~~i~~~~  374 (685)
                      |..++..+|+.+..+.
T Consensus       268 V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          268 INSANKFTGKNQEIIR  283 (349)
T ss_dssp             EEEEETTTCCSCEEEE
T ss_pred             EEEEEccCCCccEEec
Confidence            8888877777666654

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.36  E-value=2.6e-05  Score=87.96  Aligned_cols=189  Identities=9%  Similarity=-0.007  Sum_probs=113.9

Q ss_pred             CeEEEEEc-cCCCEEEEEecC-C----cEEEEECCCC-ccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC---
Q 005656          204 AVKACTIS-ACGNFAVLGTAG-G----WIERFNLQSG-ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH---  273 (685)
Q Consensus       204 ~v~~~~~s-~~g~~l~~g~~d-g----~i~~~d~~~~-~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d---  273 (685)
                      .+...+|| |||++++.+... |    .|+++|+.++ ......          -.....+++|+|+|+.|+....|   
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~----------~~~~~~~~~WspDg~~l~y~~~d~~~  244 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK----------VSGTNGEIVWGPDHTSLFYVTKDETL  244 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC----------EEEECSCCEECSSTTEEEEEEECTTC
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc----------ccCceeeEEEecCCCEEEEEEECCCC
Confidence            57889999 999998876543 3    4999999988 532110          01123468899999888877765   


Q ss_pred             --CeEEEEECCCCce--EEEee--cCCceeEEEEeecCCEEEEEeC---CCeEEEEEcCCC--ee-EEEEe-cCCCCeEE
Q 005656          274 --GDIKVWDFKGRDL--KSRWE--VGCSLVKIVYHRVNGLLATVAD---DLVIRLFDVVAL--RM-VRKFE-GHTDRITD  340 (685)
Q Consensus       274 --g~i~iwd~~~~~~--~~~~~--~~~~i~~~~~~~~~~~l~~~~~---dg~I~i~d~~~~--~~-~~~~~-~h~~~I~~  340 (685)
                        ..|+++++.++..  ...+.  .......+.|+|||++|+..+.   ...|+++|+.++  +. ++.+. +..+....
T Consensus       245 ~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s  324 (751)
T 2xe4_A          245 RENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYD  324 (751)
T ss_dssp             CEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEE
T ss_pred             CCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEE
Confidence              3688889887642  22222  2234567899999998877663   447889999875  33 13333 34445555


Q ss_pred             EEEcCCCCEEE-EEeCC--C--cEEEEEcCCC-ceee-EEeeccc--eEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656          341 FCFSEDGKWLL-SSGMD--G--SLRIWDVILA-RQID-AIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       341 l~~spdg~~l~-s~s~D--g--~I~iwd~~~~-~~i~-~~~~~~~--v~~v~~spdg~~Lat~~~d~~~I~lW~  405 (685)
                      +.|+. |+.|+ ....+  +  .|..+++.++ .... .+.....  +..+.+.  ++.|+.....++..+||.
T Consensus       325 ~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~  395 (751)
T 2xe4_A          325 VQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWT  395 (751)
T ss_dssp             EEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEE
T ss_pred             Eeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEE
Confidence            65554 55444 44443  2  5667777653 3223 3333332  4555554  555555444433555543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.34  E-value=0.00013  Score=76.11  Aligned_cols=152  Identities=9%  Similarity=0.082  Sum_probs=91.6

Q ss_pred             eEEEEEcc-CCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEE-ECCCeEEEEECC
Q 005656          205 VKACTISA-CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA-GYHGDIKVWDFK  282 (685)
Q Consensus       205 v~~~~~s~-~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-s~dg~i~iwd~~  282 (685)
                      ...++++| +|..+++-..++.|+.|+...+.......       ........+++|+|++++|+.+ ...+.|..++..
T Consensus       228 p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~-------~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          228 CNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFT-------IQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEE-------CSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             ceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEE-------cCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            45678999 67766666678899999998765422111       0222456799999999955554 467889998765


Q ss_pred             C--Cce--EEEeecC----------------Ccee-EEEEe--------ecCCEEEEEeCCCeEEEEEcCCCeeEEEEec
Q 005656          283 G--RDL--KSRWEVG----------------CSLV-KIVYH--------RVNGLLATVADDLVIRLFDVVALRMVRKFEG  333 (685)
Q Consensus       283 ~--~~~--~~~~~~~----------------~~i~-~~~~~--------~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~  333 (685)
                      .  +..  ...+...                .... .++..        +++.++++-..++.|+.++ .+++... +.+
T Consensus       301 ~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v~~-~~g  378 (430)
T 3tc9_A          301 WKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRVTT-FAG  378 (430)
T ss_dssp             TTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEEEE-EEE
T ss_pred             cccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcEEE-EEe
Confidence            3  221  1111110                1122 34443        2345555555677899888 4564433 322


Q ss_pred             C------------------CCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcC
Q 005656          334 H------------------TDRITDFCFSED-GKWLLSSGMDGSLRIWDVI  365 (685)
Q Consensus       334 h------------------~~~I~~l~~spd-g~~l~s~s~Dg~I~iwd~~  365 (685)
                      .                  -.....++++|+ +.++++-...+.|+.++++
T Consensus       379 ~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          379 RGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             CCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            2                  125789999995 5555555566778877753

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.34  E-value=0.00041  Score=71.32  Aligned_cols=162  Identities=7%  Similarity=-0.057  Sum_probs=103.7

Q ss_pred             eEEEEEccCCCEE-EEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE-CC-CeEEEEEC
Q 005656          205 VKACTISACGNFA-VLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YH-GDIKVWDF  281 (685)
Q Consensus       205 v~~~~~s~~g~~l-~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~d-g~i~iwd~  281 (685)
                      ...+++.+.+..| ++-...+.|.++++..........        ..-....+++++|.+..|+.+. .. +.|..+++
T Consensus       161 p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~--------~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~  232 (386)
T 3v65_B          161 PGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW--------QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM  232 (386)
T ss_dssp             CCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEEC--------SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             ccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeec--------CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeC
Confidence            4567777755554 444556788888876543222211        2335678999999776666554 33 67888888


Q ss_pred             CCCceEEEeecC-CceeEEEEeecCCEEEEEe-CCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 005656          282 KGRDLKSRWEVG-CSLVKIVYHRVNGLLATVA-DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSL  359 (685)
Q Consensus       282 ~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~-~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I  359 (685)
                      ............ .....++++|+++.|+.+. ..+.|..+|+........+.........+++. .+..+++-...+.|
T Consensus       233 dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V  311 (386)
T 3v65_B          233 DGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSI  311 (386)
T ss_dssp             TSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEE
T ss_pred             CCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeE
Confidence            754433333222 4578899998777665554 56789999987544333344344567888883 44455565677889


Q ss_pred             EEEEcCCCceeeEEee
Q 005656          360 RIWDVILARQIDAIHV  375 (685)
Q Consensus       360 ~iwd~~~~~~i~~~~~  375 (685)
                      ..++..+|+.+..+..
T Consensus       312 ~~~~~~~G~~~~~i~~  327 (386)
T 3v65_B          312 NSANKFTGKNQEIIRN  327 (386)
T ss_dssp             EEEETTTCCSCEEEEC
T ss_pred             EEEECCCCcceEEEcc
Confidence            9998778877766653

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.32  E-value=0.0014  Score=65.54  Aligned_cols=186  Identities=10%  Similarity=0.067  Sum_probs=106.1

Q ss_pred             CeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEE-EEEC-
Q 005656          204 AVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIK-VWDF-  281 (685)
Q Consensus       204 ~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~-iwd~-  281 (685)
                      .+..+.+.+++..++++ .+|.|+. ....|..-....       ..+...+..+.+.+++.+++.+. +|.+. -+|- 
T Consensus       123 ~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~-------~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~g  192 (327)
T 2xbg_A          123 SPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALV-------QEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPG  192 (327)
T ss_dssp             CEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEE-------CSCCCCEEEEEECTTSCEEEEET-TSSEEEEECTT
T ss_pred             CeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEee-------cCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCC
Confidence            35666666666655555 4554432 222232211111       14456788999999888776654 45443 3442 


Q ss_pred             -CCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEe-c---CCCCeEEEEEcCCCCEEEEEeCC
Q 005656          282 -KGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE-G---HTDRITDFCFSEDGKWLLSSGMD  356 (685)
Q Consensus       282 -~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~-~---h~~~I~~l~~spdg~~l~s~s~D  356 (685)
                       .+-+.+ .......+..+.+.+++.+++ ++.+|.+++.+.+.++.-..+. .   +...+.++++.+++..++++. +
T Consensus       193 G~tW~~~-~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~  269 (327)
T 2xbg_A          193 QTAWEPH-NRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-A  269 (327)
T ss_dssp             CSSCEEE-ECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-T
T ss_pred             CCceeEC-CCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-C
Confidence             122222 122346778888988887654 4567887776533344333332 1   223588999998887666654 6


Q ss_pred             CcEEEEEcCCCceeeEEee----ccceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656          357 GSLRIWDVILARQIDAIHV----DVSITALSLSPNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       357 g~I~iwd~~~~~~i~~~~~----~~~v~~v~~spdg~~Lat~~~d~~~I~lW~  405 (685)
                      |.| .+....|+.-..+..    +..+.++.|.+++. +++++.+| .|.-++
T Consensus       270 g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G-~i~~~~  319 (327)
T 2xbg_A          270 GAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKG-ILLRYV  319 (327)
T ss_dssp             TCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTT-EEEEEC
T ss_pred             CeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCc-eEEEEc
Confidence            767 455555655444432    34578888886665 44555565 666654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.30  E-value=0.0082  Score=65.56  Aligned_cols=152  Identities=13%  Similarity=0.036  Sum_probs=94.4

Q ss_pred             CEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCceEEEeec-------CCceeEEEEeecCCEE-EEEeCCCeEEEEEcCC
Q 005656          254 EVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWEV-------GCSLVKIVYHRVNGLL-ATVADDLVIRLFDVVA  324 (685)
Q Consensus       254 ~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l-~~~~~dg~I~i~d~~~  324 (685)
                      .+.+++|++.+..|+.+. ..+.|+.++.........+..       -..+..+++...++.| ++-+..+.|.+.++. 
T Consensus       341 ~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-  419 (628)
T 4a0p_A          341 NVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-  419 (628)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-
T ss_pred             CceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-
Confidence            456677777655555444 456677777664332222221       2357789999887654 455667899999986 


Q ss_pred             CeeEEEE-ecCCCCeEEEEEcC-CCCEEEEEeCCC--cEEEEEcCCCceeeEEee-c-cceEEEEEcCCCCeEEEEEeCC
Q 005656          325 LRMVRKF-EGHTDRITDFCFSE-DGKWLLSSGMDG--SLRIWDVILARQIDAIHV-D-VSITALSLSPNMDVLATAHVDQ  398 (685)
Q Consensus       325 ~~~~~~~-~~h~~~I~~l~~sp-dg~~l~s~s~Dg--~I~iwd~~~~~~i~~~~~-~-~~v~~v~~spdg~~Lat~~~d~  398 (685)
                      |+..+.+ ........+|++.| .|.++++-....  .|...++. |.....+.. . ...+.++++++++.|+.+....
T Consensus       420 G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~d-G~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~  498 (628)
T 4a0p_A          420 GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALD-GTEREVLFFSGLSKPIALALDSRLGKLFWADSDL  498 (628)
T ss_dssp             SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETT-SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCC-CCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCC
Confidence            4444443 34556789999999 454444433222  46666654 433333322 2 2379999999988888887665


Q ss_pred             CeEEEEEcC
Q 005656          399 NGVYLWVNR  407 (685)
Q Consensus       399 ~~I~lW~~~  407 (685)
                      ..|...+..
T Consensus       499 ~~I~~~~~d  507 (628)
T 4a0p_A          499 RRIESSDLS  507 (628)
T ss_dssp             TEEEEEETT
T ss_pred             CEEEEEeCC
Confidence            578877753

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.28  E-value=0.0012  Score=68.22  Aligned_cols=195  Identities=13%  Similarity=0.039  Sum_probs=123.7

Q ss_pred             CCCeEEEEEccCCCEEEEE-ecCCcEEEEECCCCcc---ccccccccccccCCCCcCEEEEEEcCCCCEEE-EEECCCeE
Q 005656          202 PTAVKACTISACGNFAVLG-TAGGWIERFNLQSGIS---RGSYLDMSERSNYAHNGEVVGVACDSTNTLMI-SAGYHGDI  276 (685)
Q Consensus       202 ~~~v~~~~~s~~g~~l~~g-~~dg~i~~~d~~~~~~---~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~s~dg~i  276 (685)
                      ...+..++|++.++.|+.. ...+.|+.+++.....   ...+.       ........++++++.+..|+ +-...+.|
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~-------~~~~~~p~glavD~~~~~lY~~d~~~~~I  183 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-------SRDIQAPDGLAVDWIHSNIYWTDSVLGTV  183 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEE-------CSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEE-------eCCCCCcccEEEEecCCceEEEECCCCeE
Confidence            4567899999876666555 4567899998875321   11111       02335678999998555454 44567899


Q ss_pred             EEEECCCCceEEEeec-CCceeEEEEeecCCEEEEEeC--CCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE
Q 005656          277 KVWDFKGRDLKSRWEV-GCSLVKIVYHRVNGLLATVAD--DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS  353 (685)
Q Consensus       277 ~iwd~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~--dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~  353 (685)
                      .+.++........+.. ......++++|.+..|+....  .+.|...++............-...+.|++++++..|+.+
T Consensus       184 ~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~a  263 (400)
T 3p5b_L          184 SVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV  263 (400)
T ss_dssp             EEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred             EEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEE
Confidence            9999887655444442 255789999997776666553  3789999887544333334344678999999988777766


Q ss_pred             e-CCCcEEEEEcCCCceeeEEeec---cceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656          354 G-MDGSLRIWDVILARQIDAIHVD---VSITALSLSPNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       354 s-~Dg~I~iwd~~~~~~i~~~~~~---~~v~~v~~spdg~~Lat~~~d~~~I~lW~  405 (685)
                      . ..+.|..+|+........+...   ....++++  ++..|+.+....+.|+.++
T Consensus       264 D~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v--~~~~lywtd~~~~~V~~~~  317 (400)
T 3p5b_L          264 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDIINEAIFSAN  317 (400)
T ss_dssp             ETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE--ETTEEEEEESSSCSEEEEE
T ss_pred             ECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE--eCCEEEEecCCCCeEEEEE
Confidence            5 5678999998654433333321   22556666  4445555555555777775

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.25  E-value=0.018  Score=67.46  Aligned_cols=340  Identities=10%  Similarity=0.075  Sum_probs=182.6

Q ss_pred             cEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecC--
Q 005656           26 VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--  103 (685)
Q Consensus        26 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~--  103 (685)
                      .|++.+...+..+..........|...+.+.  +.++.++ ++.+.++.++.+.  ...... ..-...|.|+++.|.  
T Consensus       493 ~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-g~~l~~fel~~~~--L~~~~~-~~l~~evscl~i~~~~~  566 (1158)
T 3ei3_A          493 SVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-GRALYYLQIHPQE--LRQISH-TEMEHEVACLDITPLGD  566 (1158)
T ss_dssp             CEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-TTEEEEEEEETTE--EEEEEE-EECSSCEEEEECCCCSS
T ss_pred             EEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCc--eeeecc-cCCCCceEEEEeecCCC
Confidence            4667776655555555533445677777553  3555554 5778888877531  111111 223567999998763  


Q ss_pred             ----CCEEEEEeC-CCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCc
Q 005656          104 ----GRHILSAGQ-DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTA  178 (685)
Q Consensus       104 ----~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (685)
                          +++++.|.. |++++++++.+.+.......+            ..  ..+....+..  .   .....+.++..++
T Consensus       567 ~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~------------~~--~~p~si~l~~--~---~~~~~L~igl~dG  627 (1158)
T 3ei3_A          567 SNGLSPLCAIGLWTDISARILKLPSFELLHKEMLG------------GE--IIPRSILMTT--F---ESSHYLLCALGDG  627 (1158)
T ss_dssp             STTCCSEEEEEETTTTEEEEEETTTCCEEEEEECC------------SS--CCEEEEEEEE--E---TTEEEEEEEETTS
T ss_pred             CcccccEEEEEECCCCEEEEEECCCCCeEEEEECC------------CC--CCCcEEEEEE--e---CCCcEEEEEeCCC
Confidence                468999986 999999999754433222100            00  0111111111  0   1234566777777


Q ss_pred             eEEEEEcCc--cccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEE
Q 005656          179 QAYVWRLQN--FVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVV  256 (685)
Q Consensus       179 ~~~~w~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~  256 (685)
                      .+..+.+..  +.+.......  -...++.-..+...|...+.++.+.-..+|.-+. .....-         -.-..+.
T Consensus       628 ~l~~~~~d~~tg~l~d~r~~~--LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~-~l~~s~---------l~~~~v~  695 (1158)
T 3ei3_A          628 ALFYFGLNIETGLLSDRKKVT--LGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNH-KLVFSN---------VNLKEVN  695 (1158)
T ss_dssp             EEEEEEECTTTCCEEEEEEEE--CCSSCCEEEEEESSSCEEEEEESSSCEEEEESSS-SEEEEE---------BSSSCCC
T ss_pred             eEEEEEEcCCCCccccceeEE--cCCCceEEEEEeeCCceeEEEECCCCEEEEEcCC-ceEEec---------cChHHhc
Confidence            766655542  1221111111  1123444444444455555555555555554332 211110         0111222


Q ss_pred             -EEEEcCC--CCEEEEEECCCeEEEEECCCC--ceEEEeecCCceeEEEEeecCCEEEEEeCC-----------------
Q 005656          257 -GVACDST--NTLMISAGYHGDIKVWDFKGR--DLKSRWEVGCSLVKIVYHRVNGLLATVADD-----------------  314 (685)
Q Consensus       257 -~l~~~~~--~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----------------  314 (685)
                       ...|+..  ..-++..+ ++.++|..+...  -..+++..+..+..++++|+.+.++++..+                 
T Consensus       696 ~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  774 (1158)
T 3ei3_A          696 YMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSA  774 (1158)
T ss_dssp             EEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCH
T ss_pred             eEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhh
Confidence             2234332  23344333 566888887543  345566677889999999988866655421                 


Q ss_pred             --------------------------------CeEEEEEcCCCeeEEEEec-CCCCeEEEE---EcCC-CCEEEEEe---
Q 005656          315 --------------------------------LVIRLFDVVALRMVRKFEG-HTDRITDFC---FSED-GKWLLSSG---  354 (685)
Q Consensus       315 --------------------------------g~I~i~d~~~~~~~~~~~~-h~~~I~~l~---~spd-g~~l~s~s---  354 (685)
                                                      +.|+++|..+.+.+..+.- ....+.+++   |..+ ..+++.|.   
T Consensus       775 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~  854 (1158)
T 3ei3_A          775 STQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMV  854 (1158)
T ss_dssp             HHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEEC
T ss_pred             hhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeec
Confidence                                            2467777777776665542 233455554   3322 46888775   


Q ss_pred             -------CCCcEEEEEcCCCce--eeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          355 -------MDGSLRIWDVILARQ--IDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       355 -------~Dg~I~iwd~~~~~~--i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                             ..|.|++|++..+++  +......++|++++-- +|+ |++|- . ..|++|+..
T Consensus       855 ~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~-Lla~i-g-~~l~vy~l~  912 (1158)
T 3ei3_A          855 YPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGK-LLASI-N-STVRLYEWT  912 (1158)
T ss_dssp             CTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTE-EEEEE-T-TEEEEEEEC
T ss_pred             CCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCE-EEEEc-C-CEEEEEECC
Confidence                   347899999975433  3333456678888743 454 44443 3 389998854

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.24  E-value=0.00016  Score=75.54  Aligned_cols=153  Identities=11%  Similarity=0.091  Sum_probs=94.8

Q ss_pred             eEEEEEcc-CCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE-CCCeEEEEECC
Q 005656          205 VKACTISA-CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFK  282 (685)
Q Consensus       205 v~~~~~s~-~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~  282 (685)
                      ...++++| +|+..++-..++.|+.++..++.....+..      .+....-..++++|++++|+.+. ..+.|+.++..
T Consensus       230 P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~------~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          230 AKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVM------MDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             BCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEE------CSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred             CCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEec------cCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence            45678888 666666666778999999987765222211      01122335799999998655554 56789998865


Q ss_pred             --CCceE--EEeecC----------------CceeEEEE---------eecCCEEEEEeCCCeEEEEEcCCCeeEEEEec
Q 005656          283 --GRDLK--SRWEVG----------------CSLVKIVY---------HRVNGLLATVADDLVIRLFDVVALRMVRKFEG  333 (685)
Q Consensus       283 --~~~~~--~~~~~~----------------~~i~~~~~---------~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~  333 (685)
                        ++...  ..+...                .....+++         .+++.++++-..++.|+.++. ++. +.++.+
T Consensus       304 ~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~-v~t~~G  381 (433)
T 4hw6_A          304 RETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR-VTTYAG  381 (433)
T ss_dssp             TTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSE-EEEEEC
T ss_pred             CCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCC-EEEEEe
Confidence              23221  111110                23566888         566666666667789999985 554 344433


Q ss_pred             C------------------CCCeEEEEEc-CCCCEEEEEeCCCcEEEEEcC
Q 005656          334 H------------------TDRITDFCFS-EDGKWLLSSGMDGSLRIWDVI  365 (685)
Q Consensus       334 h------------------~~~I~~l~~s-pdg~~l~s~s~Dg~I~iwd~~  365 (685)
                      .                  -.....++++ ++|.++++-...+.|+.++++
T Consensus       382 ~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          382 RGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             CCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            2                  1236788998 566655555566778877653

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.23  E-value=0.00047  Score=72.06  Aligned_cols=195  Identities=7%  Similarity=-0.010  Sum_probs=117.9

Q ss_pred             CCeEEEEE-------ccCCCEEEEEecCC-------cEEEEECCC-Cccc-----cccccccccccCCCCcCEEEEEEcC
Q 005656          203 TAVKACTI-------SACGNFAVLGTAGG-------WIERFNLQS-GISR-----GSYLDMSERSNYAHNGEVVGVACDS  262 (685)
Q Consensus       203 ~~v~~~~~-------s~~g~~l~~g~~dg-------~i~~~d~~~-~~~~-----~~~~~~~~~~~~~h~~~v~~l~~~~  262 (685)
                      .....++|       +++|+++++....+       .|.+++... +...     ..+.         --....+++++|
T Consensus       186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~---------~~~~p~giavdp  256 (496)
T 3kya_A          186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA---------AYKQCNGATIHP  256 (496)
T ss_dssp             SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE---------EESCCCCEEECT
T ss_pred             CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeec---------cCCCceEEEEcC
Confidence            45788999       99999777776654       266776443 2221     1110         012335778899


Q ss_pred             CCCE-EEEEECCCeEEEEECC-------CCce--------------EEEeecCCceeEEEEeecCCEEEEE-eCCCeEEE
Q 005656          263 TNTL-MISAGYHGDIKVWDFK-------GRDL--------------KSRWEVGCSLVKIVYHRVNGLLATV-ADDLVIRL  319 (685)
Q Consensus       263 ~~~~-l~s~s~dg~i~iwd~~-------~~~~--------------~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~I~i  319 (685)
                      ++.. +++-..++.|..+|+.       ++..              +...........++++|+|+.|+++ ...+.|+.
T Consensus       257 ~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~k  336 (496)
T 3kya_A          257 INGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMR  336 (496)
T ss_dssp             TTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             CCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEE
Confidence            5544 4455577889999987       5543              1122223456799999999965555 55778999


Q ss_pred             EEcC--CCee--EEEEecC---C------------CCeE-EEEEc-------CCCCEEEEEeCCCcEEEEEcCCCceeeE
Q 005656          320 FDVV--ALRM--VRKFEGH---T------------DRIT-DFCFS-------EDGKWLLSSGMDGSLRIWDVILARQIDA  372 (685)
Q Consensus       320 ~d~~--~~~~--~~~~~~h---~------------~~I~-~l~~s-------pdg~~l~s~s~Dg~I~iwd~~~~~~i~~  372 (685)
                      ++..  ++..  ...+.+.   .            .... .++..       ++|.+.++-...+.|+.++ .+|. +.+
T Consensus       337 id~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~T  414 (496)
T 3kya_A          337 SDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VST  414 (496)
T ss_dssp             EEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEE
T ss_pred             EecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEE
Confidence            6654  3332  1233322   1            1244 45554       4566666666788899998 5664 444


Q ss_pred             Eeec-------------------------cceEEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656          373 IHVD-------------------------VSITALSLSPNMDVLATAHVDQNGVYLWVNRC  408 (685)
Q Consensus       373 ~~~~-------------------------~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~  408 (685)
                      +...                         .....|++++++..|+++......|+.++...
T Consensus       415 iaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~  475 (496)
T 3kya_A          415 YAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQ  475 (496)
T ss_dssp             EEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred             EecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCC
Confidence            4321                         12678999997445666655555888887543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.21  E-value=0.00043  Score=68.28  Aligned_cols=122  Identities=18%  Similarity=0.307  Sum_probs=92.2

Q ss_pred             cCEEEEEE--cCC-CC-EEEEEECCCeEEEEECC-------CCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEE
Q 005656          253 GEVVGVAC--DST-NT-LMISAGYHGDIKVWDFK-------GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFD  321 (685)
Q Consensus       253 ~~v~~l~~--~~~-~~-~l~s~s~dg~i~iwd~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d  321 (685)
                      ..+.++++  ++. ++ ++++...+|.+..|++.       +.++++++...+.+..|...+....|+++-.+..|..|+
T Consensus       128 ~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~d  207 (355)
T 3amr_A          128 NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFS  207 (355)
T ss_dssp             SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred             CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEecccceEEEEe
Confidence            45667777  774 43 67788889999999983       346788888889999999999999999999998888888


Q ss_pred             cC-----CCeeEEEEe-cC-CCCeEEEEE--cCCCC-EEEEEe-CCCcEEEEEcC-CCceeeEEe
Q 005656          322 VV-----ALRMVRKFE-GH-TDRITDFCF--SEDGK-WLLSSG-MDGSLRIWDVI-LARQIDAIH  374 (685)
Q Consensus       322 ~~-----~~~~~~~~~-~h-~~~I~~l~~--spdg~-~l~s~s-~Dg~I~iwd~~-~~~~i~~~~  374 (685)
                      .+     +++.+..+. ++ ...+..|++  .++++ ||++++ .++++.+||.. +.+.+..|.
T Consensus       208 a~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          208 AEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             CSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             CCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence            65     456666553 22 246888888  55666 666666 67799999996 666666665

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.21  E-value=0.002  Score=72.06  Aligned_cols=246  Identities=12%  Similarity=-0.005  Sum_probs=143.9

Q ss_pred             EEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCC-cEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCC
Q 005656           17 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP   95 (685)
Q Consensus        17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v   95 (685)
                      +|+.+. ...|+..++........+.  ....+..++|.+.+ .++++-...+.|+.++++..................+
T Consensus       397 ~Ll~an-~~~Ir~i~l~~~~~~~l~~--~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P  473 (791)
T 3m0c_C          397 YLFFTN-RHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP  473 (791)
T ss_dssp             EEEEEC-BSSEEEECTTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred             cccccc-ccceeEeeccCCcceeeec--CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCc
Confidence            344333 3568888887766554443  45667899999854 4555656677888888765321111222223344567


Q ss_pred             eEEEEecCCCEEEEE-eCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEE
Q 005656           96 LCIRFYANGRHILSA-GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH  174 (685)
Q Consensus        96 ~~i~~~~~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (685)
                      ..|++.+.++.|+.+ ...+.|.+.++........+.                                           
T Consensus       474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~-------------------------------------------  510 (791)
T 3m0c_C          474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-------------------------------------------  510 (791)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-------------------------------------------
T ss_pred             ceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEe-------------------------------------------
Confidence            889998877555544 456778777765332111110                                           


Q ss_pred             cCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec-C-CcEEEEECCCCccccccccccccccCCCC
Q 005656          175 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA-G-GWIERFNLQSGISRGSYLDMSERSNYAHN  252 (685)
Q Consensus       175 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-d-g~i~~~d~~~~~~~~~~~~~~~~~~~~h~  252 (685)
                                               ........|++.|.+.+|+.... . +.|.+.++........+.        ..-
T Consensus       511 -------------------------~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~--------~~l  557 (791)
T 3m0c_C          511 -------------------------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT--------ENI  557 (791)
T ss_dssp             -------------------------CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC--------SSC
T ss_pred             -------------------------CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe--------CCC
Confidence                                     12344788999998777766653 2 689999986543322221        233


Q ss_pred             cCEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCceEEEeecC---CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeE
Q 005656          253 GEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMV  328 (685)
Q Consensus       253 ~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~  328 (685)
                      ....+|++++.+..|+.+. ..+.|...++............   .....+++. .+.++++-...+.|...|..+++.+
T Consensus       558 ~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~-~~~lYwtD~~~~~I~~~dk~tG~~~  636 (791)
T 3m0c_C          558 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV  636 (791)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred             CCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe-CCEEEEEECCCCEEEEEeCCCCcce
Confidence            5688999998777776665 4568999998765544443321   233455553 2334444445678888887777666


Q ss_pred             EEEecCCCCeEEEE
Q 005656          329 RKFEGHTDRITDFC  342 (685)
Q Consensus       329 ~~~~~h~~~I~~l~  342 (685)
                      ..+........+|+
T Consensus       637 ~~l~~~l~~P~~i~  650 (791)
T 3m0c_C          637 NLLAENLLSPEDMV  650 (791)
T ss_dssp             EEEECSCSCCCCEE
T ss_pred             EEeecCCCCceeEe
Confidence            66654333333443

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.20  E-value=0.013  Score=63.91  Aligned_cols=226  Identities=11%  Similarity=0.003  Sum_probs=127.9

Q ss_pred             EEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEE-EEecCCCcEEEEEecCCCCCCceeEecccCCCCC
Q 005656           17 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL-MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP   95 (685)
Q Consensus        17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l-~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v   95 (685)
                      +|+.+ ..+.|+..++++......+....-..+..++|.+.+..| ++-..++.|..++++...    ...........+
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~----~~~v~~~g~~~P   82 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSA----LEHVVEFGLDYP   82 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS----CEEEECSSCSCC
T ss_pred             EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCC----cEEEEeCCCCCc
Confidence            34433 457899999987654433332234568899999966554 455567888888776431    112222223457


Q ss_pred             eEEEEecCCCEEEEE-eCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEE
Q 005656           96 LCIRFYANGRHILSA-GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH  174 (685)
Q Consensus        96 ~~i~~~~~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (685)
                      ..+++.+.+..|+.+ ...+.|.+.++..... ..+.                                           
T Consensus        83 ~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~-~~l~-------------------------------------------  118 (628)
T 4a0p_A           83 EGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR-QVLV-------------------------------------------  118 (628)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSTTC-EEEE-------------------------------------------
T ss_pred             ceEEEEeCCCEEEEEECCCCEEEEEecCCCcE-EEEE-------------------------------------------
Confidence            889998765555544 3456777776643221 1110                                           


Q ss_pred             cCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec--CCcEEEEECCCCccccccccccccccCCCC
Q 005656          175 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA--GGWIERFNLQSGISRGSYLDMSERSNYAHN  252 (685)
Q Consensus       175 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~--dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~  252 (685)
                                           .   ........+++.|...+++....  .+.|...++.........         ..-
T Consensus       119 ---------------------~---~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~---------~~~  165 (628)
T 4a0p_A          119 ---------------------W---KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV---------PNV  165 (628)
T ss_dssp             ---------------------C---SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE---------CSC
T ss_pred             ---------------------e---CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE---------CCC
Confidence                                 0   11234678889886666666552  567888887654432221         233


Q ss_pred             cCEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCC
Q 005656          253 GEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL  325 (685)
Q Consensus       253 ~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~  325 (685)
                      ....++++++++..|+.+. ..+.|..+|+.................+++.. +.++++-...+.|...|..++
T Consensus       166 ~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg  238 (628)
T 4a0p_A          166 GRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSG  238 (628)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred             CCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCC
Confidence            4678899998776666664 55788888887543321111122334555543 333333334556666554433

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.19  E-value=0.00062  Score=67.18  Aligned_cols=196  Identities=10%  Similarity=0.191  Sum_probs=122.6

Q ss_pred             EEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCC----Cc---E-EEEecC--CCcEEEEEecCCCCCCceeE
Q 005656           17 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN----EP---V-LMSASA--DNSIKMWIFDTTDGDPRLLR   86 (685)
Q Consensus        17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~----~~---~-l~s~s~--D~~v~iWd~~~~~~~~~~~~   86 (685)
                      +++.....+-+.+||+ +|+.+..+. .  +.++.+..-|+    |+   + +++.-.  +++|++|+++.....   +.
T Consensus        42 ~ii~t~k~~gL~Vydl-~G~~l~~~~-~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~---l~  114 (355)
T 3amr_A           42 KLITTNKKSGLVVYSL-DGKMLHSYN-T--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT---LQ  114 (355)
T ss_dssp             EEEEEETTTEEEEEET-TSCEEEEEC-C--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC---EE
T ss_pred             EEEEEcCCCCEEEEcC-CCcEEEEcc-C--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc---ee
Confidence            5555556778999999 788887775 2  56777777663    22   2 333334  589999998654332   33


Q ss_pred             eccc------CC-CCCeEEEE--ecC-CC-EEEEEeCCCceEEEEeecCc---eeeEechhhHHHHHhhccccccccccC
Q 005656           87 FRSG------HS-APPLCIRF--YAN-GR-HILSAGQDRAFRLFSVIQDQ---QSRELSQRHVAKRARKLKMKEEELKLK  152 (685)
Q Consensus        87 ~~~~------h~-~~v~~i~~--~~~-~~-~l~s~s~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (685)
                      ....      .. ..+..+++  +|. ++ ++++...+|.+..|++....   ....+                      
T Consensus       115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~l----------------------  172 (355)
T 3amr_A          115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKK----------------------  172 (355)
T ss_dssp             ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEE----------------------
T ss_pred             eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceE----------------------
Confidence            3311      11 56677888  554 43 68888889999999985321   11110                      


Q ss_pred             ceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECC
Q 005656          153 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ  232 (685)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~  232 (685)
                                                 ++.+                ...+.+..|.+.+....|+++-.+.-|..|+..
T Consensus       173 ---------------------------VR~f----------------~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~  209 (355)
T 3amr_A          173 ---------------------------VRAF----------------KMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAE  209 (355)
T ss_dssp             ---------------------------EEEE----------------ECSSCEEEEEEETTTTEEEEEETTTEEEEEECS
T ss_pred             ---------------------------EEEe----------------cCCCCcceEEEcCCCCeEEEecccceEEEEeCC
Confidence                                       0111                123467889999999999999999878888855


Q ss_pred             C-----CccccccccccccccCCC-CcCEEEEEE--cCCCC-EEEEEE-CCCeEEEEECC-CCceEEEee
Q 005656          233 S-----GISRGSYLDMSERSNYAH-NGEVVGVAC--DSTNT-LMISAG-YHGDIKVWDFK-GRDLKSRWE  291 (685)
Q Consensus       233 ~-----~~~~~~~~~~~~~~~~~h-~~~v~~l~~--~~~~~-~l~s~s-~dg~i~iwd~~-~~~~~~~~~  291 (685)
                      .     +..+..+.       .++ ...+.++++  .++++ +|++++ .+.++.+||.. +.+.+..+.
T Consensus       210 p~~~~~~~~v~~~~-------~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          210 PDGGSNGTVIDRAD-------GRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             TTSCSCCEEEEEBS-------SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             cCCCCCceEEEEec-------CCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence            2     22222221       122 236888887  44555 566655 67799999986 555555554

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.12  E-value=0.0011  Score=65.91  Aligned_cols=163  Identities=10%  Similarity=-0.002  Sum_probs=103.9

Q ss_pred             CeEEEEEccCCCEE-EEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC--CCeEEEEE
Q 005656          204 AVKACTISACGNFA-VLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY--HGDIKVWD  280 (685)
Q Consensus       204 ~v~~~~~s~~g~~l-~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~--dg~i~iwd  280 (685)
                      ....+++.+.+..+ ++-...+.|.++++..........        .......+++++|.+..|+.+..  .+.|...+
T Consensus        80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~--------~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~  151 (318)
T 3sov_A           80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW--------QELDQPRAIALDPSSGFMYWTDWGEVPKIERAG  151 (318)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEE
T ss_pred             CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEe--------CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEE
Confidence            34577888754444 455567889999987543222111        23345789999997666666553  57888888


Q ss_pred             CCCCceEEEeecC-CceeEEEEeecCCEEEEEe-CCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCc
Q 005656          281 FKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVA-DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGS  358 (685)
Q Consensus       281 ~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~-~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~  358 (685)
                      +............ .....++++++++.|+.+. ..+.|..+|+..........+.......+++.. +..+++-...+.
T Consensus       152 ~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~  230 (318)
T 3sov_A          152 MDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHS  230 (318)
T ss_dssp             TTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTE
T ss_pred             cCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCe
Confidence            8754333222222 4568899999777666554 567999999875332222333445677888853 344455556788


Q ss_pred             EEEEEcCCCceeeEEee
Q 005656          359 LRIWDVILARQIDAIHV  375 (685)
Q Consensus       359 I~iwd~~~~~~i~~~~~  375 (685)
                      |..++..+|+....+..
T Consensus       231 V~~~~~~~G~~~~~i~~  247 (318)
T 3sov_A          231 ILACNKYTGEGLREIHS  247 (318)
T ss_dssp             EEEEETTTCCSCEEEEC
T ss_pred             EEEEECCCCCceEEEeC
Confidence            99999888887666543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.07  E-value=0.0015  Score=66.00  Aligned_cols=191  Identities=11%  Similarity=0.043  Sum_probs=101.9

Q ss_pred             CCCeEEEEEccC---CCEEEEEecC------CcEEEEECCCCccc--ccccc-ccccccCCCCcCEEEEEEcCCCCEEEE
Q 005656          202 PTAVKACTISAC---GNFAVLGTAG------GWIERFNLQSGISR--GSYLD-MSERSNYAHNGEVVGVACDSTNTLMIS  269 (685)
Q Consensus       202 ~~~v~~~~~s~~---g~~l~~g~~d------g~i~~~d~~~~~~~--~~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~s  269 (685)
                      ......++++|+   +..+++....      +.|..|+...+...  ..+.. .+......|.  ...++|+|+|.+.++
T Consensus        74 ~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~  151 (352)
T 2ism_A           74 ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHS--GGRIAFGPDGMLYVT  151 (352)
T ss_dssp             TCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCC--CCCEEECTTSCEEEE
T ss_pred             CCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcC--CceEEECCCCCEEEE
Confidence            356788999998   6666665542      67888887754211  11100 0000011233  358999999976666


Q ss_pred             EEC-------------CCeEEEEECCCC------------ceEEEee-cCCceeEEEEee-cCCEEEEEeCCCeE-----
Q 005656          270 AGY-------------HGDIKVWDFKGR------------DLKSRWE-VGCSLVKIVYHR-VNGLLATVADDLVI-----  317 (685)
Q Consensus       270 ~s~-------------dg~i~iwd~~~~------------~~~~~~~-~~~~i~~~~~~~-~~~~l~~~~~dg~I-----  317 (685)
                      .+.             .|.|.-++....            .....+. .......++|+| ++.++++-.....+     
T Consensus       152 ~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~  231 (352)
T 2ism_A          152 TGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGH  231 (352)
T ss_dssp             CCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CC
T ss_pred             ECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCC
Confidence            432             145666665431            0111111 124467789999 55655444333321     


Q ss_pred             -EEEEcCCCe------------------eEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCce-------ee
Q 005656          318 -RLFDVVALR------------------MVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ-------ID  371 (685)
Q Consensus       318 -~i~d~~~~~------------------~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~-------i~  371 (685)
                       .|.-+..+.                  ++..+ .+......++| .+|.++++.-..+.|...++.....       ..
T Consensus       232 dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~-~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~  309 (352)
T 2ism_A          232 DEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW-PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVET  309 (352)
T ss_dssp             CEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC-TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEE
T ss_pred             eEEEEeccCCcCCCCcccCCCCCCCCcCCeEec-CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchhe
Confidence             122222221                  22233 22334677888 4676666665667788777764431       11


Q ss_pred             EEeeccceEEEEEcCCCCeEEEEEe
Q 005656          372 AIHVDVSITALSLSPNMDVLATAHV  396 (685)
Q Consensus       372 ~~~~~~~v~~v~~spdg~~Lat~~~  396 (685)
                      .+.....+..+++.|||.+.++...
T Consensus       310 ~~~~~~rp~~v~~~pdG~lyv~~~~  334 (352)
T 2ism_A          310 ALSGFGRLREVQVGPDGALYVTTSN  334 (352)
T ss_dssp             EEESSCCEEEEEECTTSCEEEEECS
T ss_pred             ecccCCCeeEEEECCCCcEEEEEeC
Confidence            2222345899999999977666643

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.07  E-value=0.00095  Score=65.26  Aligned_cols=200  Identities=12%  Similarity=0.092  Sum_probs=127.2

Q ss_pred             CCeEEEEEccCCCEEEEEe-cCCcEEEEECCCCccccccccccccccCCCCcCEEEEEE---cCCCCEEEEEEC------
Q 005656          203 TAVKACTISACGNFAVLGT-AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC---DSTNTLMISAGY------  272 (685)
Q Consensus       203 ~~v~~~~~s~~g~~l~~g~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~~~l~s~s~------  272 (685)
                      ....++.|.+....+++++ ..|.|..|+...+........ ...........+.++.|   +|+++++++...      
T Consensus        13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~-~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~   91 (334)
T 2p9w_A           13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVID-GASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF   91 (334)
T ss_dssp             CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCT-TTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred             cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecC-CccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence            3445778988666666666 789999999976643322110 00000011224689999   688777775432      


Q ss_pred             -------CCeEEEEECC---CCceEEEeecC--------------CceeEEEEeecCCEEEEEeCC-CeEEEEEcCCCee
Q 005656          273 -------HGDIKVWDFK---GRDLKSRWEVG--------------CSLVKIVYHRVNGLLATVADD-LVIRLFDVVALRM  327 (685)
Q Consensus       273 -------dg~i~iwd~~---~~~~~~~~~~~--------------~~i~~~~~~~~~~~l~~~~~d-g~I~i~d~~~~~~  327 (685)
                             +..|..||+.   +++.+......              .....++..++|+..++++.. +.|..++.... .
T Consensus        92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~  170 (334)
T 2p9w_A           92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-T  170 (334)
T ss_dssp             TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-C
T ss_pred             cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-E
Confidence                   6789999999   77776655432              247899999999999988888 88888887644 3


Q ss_pred             EEEEe-c-----CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEee-------c-cceEEE-EEcCCCCeEE
Q 005656          328 VRKFE-G-----HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV-------D-VSITAL-SLSPNMDVLA  392 (685)
Q Consensus       328 ~~~~~-~-----h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~-------~-~~v~~v-~~spdg~~La  392 (685)
                      +..+. .     .....+.|+++|||+.|++....|.+..+|+.+.... .+..       . .....+ .--.+|+.|+
T Consensus       171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~-~v~~~~~G~~~~~~~~dgilp~~~~G~vll  249 (334)
T 2p9w_A          171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAW-PEPVKINGDFGTLSGTEKIVTVPVGNESVL  249 (334)
T ss_dssp             EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCC-CEECEESSCCCCCTTEEEEEEEEETTEEEE
T ss_pred             EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcce-eecccccCCcccccCcccccccccCCEEEE
Confidence            33322 1     1123679999999999988877999999998843220 1211       1 113443 3335788756


Q ss_pred             EEEeCCCeEEEEE
Q 005656          393 TAHVDQNGVYLWV  405 (685)
Q Consensus       393 t~~~d~~~I~lW~  405 (685)
                      ++..-.+.+.+.+
T Consensus       250 V~~~~~~~~~l~S  262 (334)
T 2p9w_A          250 VGARAPYAISFRS  262 (334)
T ss_dssp             EEEETTEEEEEEC
T ss_pred             EEcCCCCEEEEEC
Confidence            5554432444443

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.02  E-value=0.0046  Score=64.63  Aligned_cols=117  Identities=15%  Similarity=0.131  Sum_probs=70.0

Q ss_pred             EEEEEEccC-CCCEEEEEeCCCcEEEEeCCCCeeeEEeecc--cccCeeEEEE-------eCCCcEEEEecCCC-----c
Q 005656            5 VTALAFSSD-GQPLLASGASSGVISIWNLEKRRLQSVIREA--HDNAIISLHF-------FANEPVLMSASADN-----S   69 (685)
Q Consensus         5 V~~l~fspd-g~~~latg~~dg~I~vwd~~~~~~~~~~~~~--h~~~V~~l~~-------sp~~~~l~s~s~D~-----~   69 (685)
                      -..|+|+|. +..++++-...+.|++.|++++........+  .......++|       ++++..|+.+...+     .
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~  220 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES  220 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence            468999983 4436665555577999999998877665422  1235899999       99999666655443     2


Q ss_pred             EEEEEecCCC-CCCc--e-eEecccCCCCCeEEEEecCCCEEE-EEeCCCceEEEEee
Q 005656           70 IKMWIFDTTD-GDPR--L-LRFRSGHSAPPLCIRFYANGRHIL-SAGQDRAFRLFSVI  122 (685)
Q Consensus        70 v~iWd~~~~~-~~~~--~-~~~~~~h~~~v~~i~~~~~~~~l~-s~s~dg~i~vwd~~  122 (685)
                      ..++-++... +...  . ...+.. -..+..++++|++..|+ +-..++.|..+|+.
T Consensus       221 ~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~  277 (496)
T 3kya_A          221 PSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLV  277 (496)
T ss_dssp             EEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred             ceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence            2333332211 1221  0 011111 12456788999654544 55567778888875

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.97  E-value=5e-05  Score=84.46  Aligned_cols=243  Identities=11%  Similarity=0.001  Sum_probs=135.6

Q ss_pred             CCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEe-cCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEec
Q 005656           24 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA-SADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA  102 (685)
Q Consensus        24 dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~-s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~  102 (685)
                      .+.|+..++.+......+.  ....+..++|.+.+..|+.+ ...+.|+.++++..................+..|++.+
T Consensus       385 ~~~I~~id~~~~~~~~~~~--~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~  462 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW  462 (699)
T ss_dssp             TTC-CEECTTSCCEECCSC--CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCC
T ss_pred             ccceEEEeCCCCcceeeec--cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEe
Confidence            4678888888776655443  23456789999876655554 45678988887651100011111111223456788875


Q ss_pred             CCCEE-EEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEE
Q 005656          103 NGRHI-LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY  181 (685)
Q Consensus       103 ~~~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (685)
                      .+..| ++-...+.|.++++........+.                                                  
T Consensus       463 ~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~--------------------------------------------------  492 (699)
T 1n7d_A          463 IHSNIYWTDSVLGTVSVADTKGVKRKTLFR--------------------------------------------------  492 (699)
T ss_dssp             SSSBCEECCTTTSCEEEEBSSSCCEEEECC--------------------------------------------------
T ss_pred             eCCcEEEEeccCCeEEEEecCCCceEEEEe--------------------------------------------------
Confidence            44444 443456778777764332111110                                                  


Q ss_pred             EEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec--CCcEEEEECCCCccccccccccccccCCCCcCEEEEE
Q 005656          182 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA--GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVA  259 (685)
Q Consensus       182 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~--dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  259 (685)
                                        ........+++.|.+.+|++...  .+.|.++++..... ..+..       ..-....+|+
T Consensus       493 ------------------~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-~~l~~-------~~l~~PnGla  546 (699)
T 1n7d_A          493 ------------------EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVT-------ENIQWPNGIT  546 (699)
T ss_dssp             ------------------CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-CEESC-------SSCSSCCCEE
T ss_pred             ------------------CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-eEEEe-------CCCCCccEEE
Confidence                              11123456778887666655543  26788887754322 11110       1123456899


Q ss_pred             EcCCCCEEEEE-ECCCeEEEEECCCCceEEEeecC---CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCC
Q 005656          260 CDSTNTLMISA-GYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT  335 (685)
Q Consensus       260 ~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~  335 (685)
                      |++++..|+.+ +..+.|..+++........+...   .....+++.. +.++++....+.|..+|..+++.+..+....
T Consensus       547 vd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~-~~lywtd~~~~~V~~~d~~~G~~~~~i~~~~  625 (699)
T 1n7d_A          547 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLLAENL  625 (699)
T ss_dssp             ECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEET-TEEEEECSTTTCEEEEETTTEEEEECCCTTC
T ss_pred             EeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEEC-CEEEEEeCCCCeEEEEEccCCCceEEeecCC
Confidence            99876555544 46678999998754333333211   2234455543 3455555667899999998888877775443


Q ss_pred             CCeEEEEEcC
Q 005656          336 DRITDFCFSE  345 (685)
Q Consensus       336 ~~I~~l~~sp  345 (685)
                      ..++.|++.+
T Consensus       626 ~~P~~i~v~~  635 (699)
T 1n7d_A          626 LSPEDMVLFH  635 (699)
T ss_dssp             SSCCCCCBCS
T ss_pred             CCCcEEEEeC
Confidence            3455555443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.97  E-value=0.006  Score=68.26  Aligned_cols=195  Identities=13%  Similarity=0.019  Sum_probs=123.1

Q ss_pred             CCCeEEEEEccCCCEEEE-EecCCcEEEEECCCCcc---ccccccccccccCCCCcCEEEEEEcCCCCEEEEE-ECCCeE
Q 005656          202 PTAVKACTISACGNFAVL-GTAGGWIERFNLQSGIS---RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA-GYHGDI  276 (685)
Q Consensus       202 ~~~v~~~~~s~~g~~l~~-g~~dg~i~~~d~~~~~~---~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-s~dg~i  276 (685)
                      ...+..+++++.+..|+. -...+.|+.+++.....   ...+.       ........+|++++.++.|+.+ ...+.|
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi-------~~~l~~P~GLAvD~~~~~LY~tD~~~~~I  495 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-------SRDIQAPDGLAVDWIHSNIYWTDSVLGTV  495 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-------CSSCSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEE-------ecCCCCcceeeeeecCCcEEEEecCCCeE
Confidence            456778999886555554 45567899998875321   11111       0233456789999877655554 467899


Q ss_pred             EEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeC-C-CeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE
Q 005656          277 KVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVAD-D-LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS  353 (685)
Q Consensus       277 ~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~-d-g~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~  353 (685)
                      .+.++........+... .....+++.|.+..|+.+.. . +.|...++........+...-...+.|++.+.+..|+.+
T Consensus       496 ~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwa  575 (791)
T 3m0c_C          496 SVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV  575 (791)
T ss_dssp             EEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred             EEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEE
Confidence            99999866544444322 56789999998776666553 3 689999987554433344444678999999877777666


Q ss_pred             e-CCCcEEEEEcCCCceeeEEeecc---ceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656          354 G-MDGSLRIWDVILARQIDAIHVDV---SITALSLSPNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       354 s-~Dg~I~iwd~~~~~~i~~~~~~~---~v~~v~~spdg~~Lat~~~d~~~I~lW~  405 (685)
                      . ..+.|...++........+....   ...+|++  .+..|+.+....+.|+..+
T Consensus       576 D~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav--~~~~lYwtD~~~~~I~~~d  629 (791)
T 3m0c_C          576 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDIINEAIFSAN  629 (791)
T ss_dssp             ETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEEEEEETTTTEEEEEE
T ss_pred             eCCCCcEEEEecCCCceEEEecCCCccCCCCEEEE--eCCEEEEEECCCCEEEEEe
Confidence            4 55679999986544444433221   2556666  4457777766655676665

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.86  E-value=0.0064  Score=61.37  Aligned_cols=103  Identities=20%  Similarity=0.260  Sum_probs=59.4

Q ss_pred             EEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeee--EEee--cccccCeeEEEEeCC---CcEEEEe-cCC-----CcEE
Q 005656            5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ--SVIR--EAHDNAIISLHFFAN---EPVLMSA-SAD-----NSIK   71 (685)
Q Consensus         5 V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~--~~~~--~~h~~~V~~l~~sp~---~~~l~s~-s~D-----~~v~   71 (685)
                      -..|+|.|||+ ++++ ..+|.|.+++  +++..  ..+.  .........++|+|+   +..|+.+ ...     +.|.
T Consensus        33 P~~ia~~pdG~-l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           33 PWALAFLPDGG-MLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             EEEEEECTTSC-EEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             ceEEEEcCCCe-EEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            46899999998 6555 5569999998  44422  1111  012356889999998   4444433 322     5676


Q ss_pred             EEEecCCCC-CC-ceeEecc---cCCCCCeEEEEecCCCEEEEEe
Q 005656           72 MWIFDTTDG-DP-RLLRFRS---GHSAPPLCIRFYANGRHILSAG  111 (685)
Q Consensus        72 iWd~~~~~~-~~-~~~~~~~---~h~~~v~~i~~~~~~~~l~s~s  111 (685)
                      .|+.+...- .. .++..+.   +.......++|.|||...++.+
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            776653210 01 1222222   2122347899999996655544

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.71  E-value=0.002  Score=63.05  Aligned_cols=152  Identities=10%  Similarity=0.133  Sum_probs=107.1

Q ss_pred             CEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCceEEE-eec-------CCceeEEEE---eecCCEEEEEe---------
Q 005656          254 EVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSR-WEV-------GCSLVKIVY---HRVNGLLATVA---------  312 (685)
Q Consensus       254 ~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~-~~~-------~~~i~~~~~---~~~~~~l~~~~---------  312 (685)
                      .--++.|++....++.++ ..|+|..||...+..... +..       ...+..+.+   .|+++++++..         
T Consensus        14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g   93 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD   93 (334)
T ss_dssp             CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred             CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence            345789988766676666 789999999986654433 221       014578899   68877777644         


Q ss_pred             ----CCCeEEEEEcC---CCeeEEEEe--c-----------CCCCeEEEEEcCCCCEEEEEeCC-CcEEEEEcCCCceee
Q 005656          313 ----DDLVIRLFDVV---ALRMVRKFE--G-----------HTDRITDFCFSEDGKWLLSSGMD-GSLRIWDVILARQID  371 (685)
Q Consensus       313 ----~dg~I~i~d~~---~~~~~~~~~--~-----------h~~~I~~l~~spdg~~l~s~s~D-g~I~iwd~~~~~~i~  371 (685)
                          .+..+..||+.   +++.+....  .           -....++++..++|+..++++.- +.|...+.. |+.+.
T Consensus        94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd-G~~~~  172 (334)
T 2p9w_A           94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD-GKTVS  172 (334)
T ss_dssp             CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT-SCCEE
T ss_pred             cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC-CCEEe
Confidence                26789999999   787765554  1           11248899999999999988877 777666644 44333


Q ss_pred             EEeecc-------ceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          372 AIHVDV-------SITALSLSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       372 ~~~~~~-------~v~~v~~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                      .+....       ..+.++++|+|..|++.... +.++.++..
T Consensus       173 ~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~-g~L~~fD~~  214 (334)
T 2p9w_A          173 TFAWESGNGGQRPGYSGITFDPHSNKLIAFGGP-RALTAFDVS  214 (334)
T ss_dssp             EEEECCCCSSSCCSCSEEEEETTTTEEEEESSS-SSEEEEECS
T ss_pred             eeeecCCCcccccCcceEEEeCCCCEEEEEcCC-CeEEEEcCC
Confidence            332111       16799999999999999874 489999866

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.67  E-value=0.0063  Score=60.90  Aligned_cols=197  Identities=13%  Similarity=0.138  Sum_probs=116.1

Q ss_pred             CeEEEEEccCCCEEEEE------------ecCCcEEEEECCCCccc-cccccccccccCCCCcCEEEEEEcC--CCC-EE
Q 005656          204 AVKACTISACGNFAVLG------------TAGGWIERFNLQSGISR-GSYLDMSERSNYAHNGEVVGVACDS--TNT-LM  267 (685)
Q Consensus       204 ~v~~~~~s~~g~~l~~g------------~~dg~i~~~d~~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~~~--~~~-~l  267 (685)
                      ..-.+.+.|+|..+++.            ..+|.|.++|+.+.... ..+.. .............++.+.+  ++. +|
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~-~g~~~~~~~f~PhGi~~~~d~dg~~~L  129 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEI-IGNTLDISSFNPHGISTFIDDDNTVYL  129 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEE-ECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEc-cCCCCCcCceeeeeeEEEECCCCcEEE
Confidence            34566677776444433            26899999999743221 11110 0000011234667777755  343 45


Q ss_pred             EEEE-C--CCeEEEEECCCC--c--eEEEeecC--CceeEEEEeecCCEEEEEe-----------------CCCeEEEEE
Q 005656          268 ISAG-Y--HGDIKVWDFKGR--D--LKSRWEVG--CSLVKIVYHRVNGLLATVA-----------------DDLVIRLFD  321 (685)
Q Consensus       268 ~s~s-~--dg~i~iwd~~~~--~--~~~~~~~~--~~i~~~~~~~~~~~l~~~~-----------------~dg~I~i~d  321 (685)
                      +.+. .  +.+|.+|++...  .  .+..+...  ...+.+.+.++|.+.++..                 ..|.|+-||
T Consensus       130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d  209 (355)
T 3sre_A          130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS  209 (355)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred             EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence            4443 2  467888877643  2  22233332  5678999999999877754                 124555555


Q ss_pred             cCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCC-Cce--eeEEeeccceEEEEEcC-CCCeEEEEEe
Q 005656          322 VVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG-MDGSLRIWDVIL-ARQ--IDAIHVDVSITALSLSP-NMDVLATAHV  396 (685)
Q Consensus       322 ~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s-~Dg~I~iwd~~~-~~~--i~~~~~~~~v~~v~~sp-dg~~Lat~~~  396 (685)
                      .  ++. +.+...-...+.++||||+++|+.+. ..+.|..|++.. +..  .+.+......-.+++.+ +|.+.++++.
T Consensus       210 ~--~~~-~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~~  286 (355)
T 3sre_A          210 P--NDV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHP  286 (355)
T ss_dssp             T--TCC-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEES
T ss_pred             C--CeE-EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEecC
Confidence            4  332 22332334579999999999887665 578899999863 433  23444445588999999 5998887776


Q ss_pred             CCCeEEEE
Q 005656          397 DQNGVYLW  404 (685)
Q Consensus       397 d~~~I~lW  404 (685)
                      ++..|..|
T Consensus       287 ~g~~v~~~  294 (355)
T 3sre_A          287 NGMRIFFY  294 (355)
T ss_dssp             CHHHHHSC
T ss_pred             CceEEEEE
Confidence            64344433

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.64  E-value=0.0078  Score=60.76  Aligned_cols=190  Identities=12%  Similarity=0.042  Sum_probs=101.1

Q ss_pred             CCeEEEEEccC---CCEEEEEec--------CCcEEEEECCCCcc----cccc-ccccccccCCCCcCEEEEEEcCCCCE
Q 005656          203 TAVKACTISAC---GNFAVLGTA--------GGWIERFNLQSGIS----RGSY-LDMSERSNYAHNGEVVGVACDSTNTL  266 (685)
Q Consensus       203 ~~v~~~~~s~~---g~~l~~g~~--------dg~i~~~d~~~~~~----~~~~-~~~~~~~~~~h~~~v~~l~~~~~~~~  266 (685)
                      .....++++|+   +..+++...        ...|..|++..+..    ...+ ...+......|.  ...++|.|+|.+
T Consensus        66 ~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~L  143 (353)
T 2g8s_A           66 GGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYL  143 (353)
T ss_dssp             CSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEE
T ss_pred             CCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcE
Confidence            45678899986   555555533        23577777654311    1111 000000011243  357999999966


Q ss_pred             EEEEEC-------------CCeEEEEECCCCc------------eEEEee-cCCceeEEEEeecCCEEEEEeCC--CeEE
Q 005656          267 MISAGY-------------HGDIKVWDFKGRD------------LKSRWE-VGCSLVKIVYHRVNGLLATVADD--LVIR  318 (685)
Q Consensus       267 l~s~s~-------------dg~i~iwd~~~~~------------~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d--g~I~  318 (685)
                      .++.+.             .|.|.-++....-            ....+. .......++|+|....|.++...  +.=.
T Consensus       144 yv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~de  223 (353)
T 2g8s_A          144 FIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDE  223 (353)
T ss_dssp             EEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEE
T ss_pred             EEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcE
Confidence            665543             2467667765320            111222 22457889999944444443322  1112


Q ss_pred             EEEcCCC-------------------------------eeEEEEecCCCCeEEEEEcC-------CCCEEEEEeCCCcEE
Q 005656          319 LFDVVAL-------------------------------RMVRKFEGHTDRITDFCFSE-------DGKWLLSSGMDGSLR  360 (685)
Q Consensus       319 i~d~~~~-------------------------------~~~~~~~~h~~~I~~l~~sp-------dg~~l~s~s~Dg~I~  360 (685)
                      |.-+..+                               .++..+. +...+..++|..       +|+++++.-..+.|.
T Consensus       224 i~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~  302 (353)
T 2g8s_A          224 INIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVI  302 (353)
T ss_dssp             EECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEE
T ss_pred             EeEeccCCcCCCCCccCCCCCCCCccCcccCCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEE
Confidence            2111111                               1122222 334577888864       467777766778888


Q ss_pred             EEEcCCCceeeEEee----ccceEEEEEcCCCCeEEEEE
Q 005656          361 IWDVILARQIDAIHV----DVSITALSLSPNMDVLATAH  395 (685)
Q Consensus       361 iwd~~~~~~i~~~~~----~~~v~~v~~spdg~~Lat~~  395 (685)
                      ..++..++.+.....    ...+..+++.|||.+.++..
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td  341 (353)
T 2g8s_A          303 VMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTD  341 (353)
T ss_dssp             EEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEEC
T ss_pred             EEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEe
Confidence            888876654433221    23599999999998666543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.63  E-value=0.00027  Score=78.57  Aligned_cols=162  Identities=12%  Similarity=0.037  Sum_probs=94.8

Q ss_pred             eEEEEEccCCCEE-EEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC-C-CeEEEEEC
Q 005656          205 VKACTISACGNFA-VLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-H-GDIKVWDF  281 (685)
Q Consensus       205 v~~~~~s~~g~~l-~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-d-g~i~iwd~  281 (685)
                      ...+++.+.+..| ++-...+.|.++++........+.        .......+++++|.+.+|+.+.. . +.|..+++
T Consensus       455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~--------~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~  526 (699)
T 1n7d_A          455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR--------EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL  526 (699)
T ss_dssp             CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECC--------CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCS
T ss_pred             cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEe--------CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeC
Confidence            3456777544444 444556789999887554332221        12234568899987655555442 2 67888877


Q ss_pred             CCCceEEEeec-CCceeEEEEeecCCEEEEE-eCCCeEEEEEcCCCeeEEEEe--cCCCCeEEEEEcCCCCEEEEEeCCC
Q 005656          282 KGRDLKSRWEV-GCSLVKIVYHRVNGLLATV-ADDLVIRLFDVVALRMVRKFE--GHTDRITDFCFSEDGKWLLSSGMDG  357 (685)
Q Consensus       282 ~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~-~~dg~I~i~d~~~~~~~~~~~--~h~~~I~~l~~spdg~~l~s~s~Dg  357 (685)
                      ........... -.....++++|+++.|+.+ ...+.|..+|+........+.  +.......|++..+ .++++....+
T Consensus       527 dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~  605 (699)
T 1n7d_A          527 NGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINE  605 (699)
T ss_dssp             SSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTT
T ss_pred             CCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCC
Confidence            64332222211 2456789999886655444 456789999987543222222  12233455666443 3444555678


Q ss_pred             cEEEEEcCCCceeeEEee
Q 005656          358 SLRIWDVILARQIDAIHV  375 (685)
Q Consensus       358 ~I~iwd~~~~~~i~~~~~  375 (685)
                      .|..++..+|+.+..+..
T Consensus       606 ~V~~~d~~~G~~~~~i~~  623 (699)
T 1n7d_A          606 AIFSANRLTGSDVNLLAE  623 (699)
T ss_dssp             CEEEEETTTEEEEECCCT
T ss_pred             eEEEEEccCCCceEEeec
Confidence            899999888887766643

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.61  E-value=0.029  Score=56.48  Aligned_cols=189  Identities=15%  Similarity=0.090  Sum_probs=102.9

Q ss_pred             CCeEEEEEccC---CCEEEEEec----C----CcEEEEECCCCc--c--ccccccccccccCCCCcCEEEEEEcCCCCEE
Q 005656          203 TAVKACTISAC---GNFAVLGTA----G----GWIERFNLQSGI--S--RGSYLDMSERSNYAHNGEVVGVACDSTNTLM  267 (685)
Q Consensus       203 ~~v~~~~~s~~---g~~l~~g~~----d----g~i~~~d~~~~~--~--~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l  267 (685)
                      .....++++|+   +..|++...    +    +.|..|+...+.  .  ...+... ......|.  ...++|.|+|.+.
T Consensus        73 ~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~-~~~~~~h~--~~~l~~~pDG~Ly  149 (354)
T 3a9g_A           73 AGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDG-IPGAYIHN--GGRIRFGPDGMLY  149 (354)
T ss_dssp             CSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEE-EECCSSCC--CCCEEECTTSCEE
T ss_pred             CceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEc-CCCCCCcC--CceEEECCCCcEE
Confidence            45788999997   566666554    2    678888876541  1  0111000 00111233  3579999999876


Q ss_pred             EEEEC-------------CCeEEEEECCCC---------ceEEEeecCCceeEEEEee-cCCEEEEEeCCC---eEEEEE
Q 005656          268 ISAGY-------------HGDIKVWDFKGR---------DLKSRWEVGCSLVKIVYHR-VNGLLATVADDL---VIRLFD  321 (685)
Q Consensus       268 ~s~s~-------------dg~i~iwd~~~~---------~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg---~I~i~d  321 (685)
                      ++.+.             .|.|.-++....         ..+... .......++|+| ++.++++-....   .|.+..
T Consensus       150 vt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~-G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~  228 (354)
T 3a9g_A          150 ITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSY-GHRNPQGIDWHRASGVMVATEHGPVGHDEVNIIL  228 (354)
T ss_dssp             EECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEE-CCSCCCEEEECTTTCCEEEEECCSSSCCEEEEEC
T ss_pred             EEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEE-ccCCcceEEEeCCCCCEEEEecCCCCCcEEEEec
Confidence            66442             245655555432         011111 124567899999 555544433222   233332


Q ss_pred             cCC----------------CeeEEEEecCCCCeEEEEEc-------CCCCEEEEEeCCCcEEEEEcCCC-cee--eEEee
Q 005656          322 VVA----------------LRMVRKFEGHTDRITDFCFS-------EDGKWLLSSGMDGSLRIWDVILA-RQI--DAIHV  375 (685)
Q Consensus       322 ~~~----------------~~~~~~~~~h~~~I~~l~~s-------pdg~~l~s~s~Dg~I~iwd~~~~-~~i--~~~~~  375 (685)
                      ...                ..++..+......+..++|.       .+|+++++.-..+.|...++... ...  ..+..
T Consensus       229 ~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~  308 (354)
T 3a9g_A          229 KGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFK  308 (354)
T ss_dssp             TTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECT
T ss_pred             CCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeecc
Confidence            110                01222331123457888884       56777777667778888888753 332  22221


Q ss_pred             --ccceEEEEEcCCCCeEEEEE
Q 005656          376 --DVSITALSLSPNMDVLATAH  395 (685)
Q Consensus       376 --~~~v~~v~~spdg~~Lat~~  395 (685)
                        ...+..+++.|||.+.++..
T Consensus       309 ~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          309 NVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             TTSCCEEEEEECTTSCEEEEEC
T ss_pred             CCCCCeeEEEECCCCcEEEEEe
Confidence              23489999999997666553

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.60  E-value=0.024  Score=56.72  Aligned_cols=97  Identities=11%  Similarity=0.106  Sum_probs=60.7

Q ss_pred             CceeEEEEeecCCEEEEEe-CCCeEEEEEcCC-Cee--EEEEecCCCCeEEEEEcC-CCCEEEEEeCC-CcEEEEEcC--
Q 005656          294 CSLVKIVYHRVNGLLATVA-DDLVIRLFDVVA-LRM--VRKFEGHTDRITDFCFSE-DGKWLLSSGMD-GSLRIWDVI--  365 (685)
Q Consensus       294 ~~i~~~~~~~~~~~l~~~~-~dg~I~i~d~~~-~~~--~~~~~~h~~~I~~l~~sp-dg~~l~s~s~D-g~I~iwd~~--  365 (685)
                      ...+.++|+||++.++++. ..+.|+.|++.. ++.  .+.+ ...+..-.+++.+ +|++.+++..+ +.|..|+-.  
T Consensus       221 ~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~~~  299 (355)
T 3sre_A          221 DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENP  299 (355)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTTSC
T ss_pred             cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCCceEEEEECCCCC
Confidence            5678899999998777665 568999999863 322  3344 2346678899999 59977766644 344444432  


Q ss_pred             CCceeeEEee---ccc-eEEEEEcCCCCeEE
Q 005656          366 LARQIDAIHV---DVS-ITALSLSPNMDVLA  392 (685)
Q Consensus       366 ~~~~i~~~~~---~~~-v~~v~~spdg~~La  392 (685)
                      .+..+..++.   ... +..+ |..||+.|-
T Consensus       300 ~~s~v~rI~~~~~~~~~v~~v-~~ddG~~l~  329 (355)
T 3sre_A          300 PGSEVLRIQDILSEEPKVTVV-YAENGTVLQ  329 (355)
T ss_dssp             CCEEEEEEECTTSSSCEEEEE-EEECSSSCC
T ss_pred             CCCEEEEEEccCCCCcEEEEE-EEcCCCEEE
Confidence            2445555543   222 4444 555776543

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.49  E-value=0.026  Score=56.81  Aligned_cols=62  Identities=15%  Similarity=0.140  Sum_probs=42.3

Q ss_pred             CCceeEEEEe-------ecCCEEEEEeCCCeEEEEEcCCC-eeE--EEEe-cCCCCeEEEEEcCCCCEEEEEe
Q 005656          293 GCSLVKIVYH-------RVNGLLATVADDLVIRLFDVVAL-RMV--RKFE-GHTDRITDFCFSEDGKWLLSSG  354 (685)
Q Consensus       293 ~~~i~~~~~~-------~~~~~l~~~~~dg~I~i~d~~~~-~~~--~~~~-~h~~~I~~l~~spdg~~l~s~s  354 (685)
                      +.....++|.       .+|.++++....+.|..+++... +..  ..+. +-...+.++++.|||.+.++..
T Consensus       258 ~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          258 TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            3557778883       46767777777788999998753 332  2332 3346799999999998666654

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.48  E-value=0.11  Score=52.32  Aligned_cols=236  Identities=9%  Similarity=0.065  Sum_probs=141.1

Q ss_pred             CCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecC
Q 005656           24 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN  103 (685)
Q Consensus        24 dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~  103 (685)
                      +..|.|.|+.++..+.+..    -.--+.-.+|..+.+|--. ..++.|+|+++.    ..++... ...+|..=.|-.+
T Consensus        47 ~~~vvIiDl~~~~~~~rrp----i~AdsAIMnP~~~iiALra-g~~lQiFnle~K----~klks~~-~~e~VvfWkWis~  116 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIRRP----ISADSAIMNPASKVIALKA-GKTLQIFNIEMK----SKMKAHT-MTDDVTFWKWISL  116 (494)
T ss_dssp             CCEEEEEETTSTTSCEEEE----CCCSEEEECSSSSCEEEEE-TTEEEEEETTTT----EEEEEEE-CSSCCCEEEEEET
T ss_pred             CCeEEEEECCCCCcceecc----cccceeeeCCCCcEEEEec-CCeEEEEchHHh----hhhccee-cCCCceEEEecCC
Confidence            3478889988865543222    1123556788888777665 679999999887    4444432 3456777788755


Q ss_pred             CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEE
Q 005656          104 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW  183 (685)
Q Consensus       104 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  183 (685)
                      . .|+-.+ +..|.-|++........+                                                    +
T Consensus       117 ~-~l~lVT-~taVyHWsi~~~s~P~kv----------------------------------------------------F  142 (494)
T 1bpo_A          117 N-TVALVT-DNAVYHWSMEGESQPVKM----------------------------------------------------F  142 (494)
T ss_dssp             T-EEEEEC-SSEEEEEESSSSCCCEEE----------------------------------------------------E
T ss_pred             C-eEEEEc-CCeeEEecccCCCCchhh----------------------------------------------------e
Confidence            4 344333 557999998653322111                                                    1


Q ss_pred             EcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe-------cCCcEEEEECCCCccccccccccccccCCCCcCEE
Q 005656          184 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-------AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVV  256 (685)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-------~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~  256 (685)
                      +....           -....|.....+++.++++..+       -.|.+.+|....+.....         .+|.....
T Consensus       143 dR~~~-----------L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~i---------eGhaa~F~  202 (494)
T 1bpo_A          143 DRHSS-----------LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPI---------EGHAASFA  202 (494)
T ss_dssp             ECCGG-----------GTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEE---------CCSEEEEE
T ss_pred             ecchh-----------cccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchh---------eeeeeeeE
Confidence            10000           1134566666677777665432       247788999877654322         26665555


Q ss_pred             EEEEcCCC---CEEEEEEC---CCeEEEEECCCC---ce---EEEee----c---CCceeEEEEeecCCEEEEEeCCCeE
Q 005656          257 GVACDSTN---TLMISAGY---HGDIKVWDFKGR---DL---KSRWE----V---GCSLVKIVYHRVNGLLATVADDLVI  317 (685)
Q Consensus       257 ~l~~~~~~---~~l~s~s~---dg~i~iwd~~~~---~~---~~~~~----~---~~~i~~~~~~~~~~~l~~~~~dg~I  317 (685)
                      .+.+..+.   ..++.+..   .+.+++-++...   ..   ....+    .   ..-..++..++.-..++.-+.-|.|
T Consensus       203 ~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i  282 (494)
T 1bpo_A          203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYI  282 (494)
T ss_dssp             EEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEE
T ss_pred             EEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceE
Confidence            55443221   23343433   278999988532   10   11111    1   1345678888888899999999999


Q ss_pred             EEEEcCCCeeEEEEecCCCCeEEEEE
Q 005656          318 RLFDVVALRMVRKFEGHTDRITDFCF  343 (685)
Q Consensus       318 ~i~d~~~~~~~~~~~~h~~~I~~l~~  343 (685)
                      ++||+.++.++..-+-....|-..+.
T Consensus       283 ~lyDleTgt~i~~nrIs~~~iF~t~~  308 (494)
T 1bpo_A          283 HLYDLETGTCIYMNRISGETIFVTAP  308 (494)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             EEEecccceeeeeecccCCceEEecc
Confidence            99999999998776644444443333

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.47  E-value=0.059  Score=54.24  Aligned_cols=67  Identities=16%  Similarity=0.123  Sum_probs=42.4

Q ss_pred             CCcCEEEEEEcC-------CCCEEEEEECCCeEEEEECCCCceEEEee----cCCceeEEEEeecCCEEEEEe-CCCeE
Q 005656          251 HNGEVVGVACDS-------TNTLMISAGYHGDIKVWDFKGRDLKSRWE----VGCSLVKIVYHRVNGLLATVA-DDLVI  317 (685)
Q Consensus       251 h~~~v~~l~~~~-------~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~-~dg~I  317 (685)
                      +.....++.|..       ++.++++.-..+.|...++..++......    ....+..+++.|+|.++++.. .+|.|
T Consensus       269 ~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I  347 (353)
T 2g8s_A          269 DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGEL  347 (353)
T ss_dssp             SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEE
T ss_pred             CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEE
Confidence            345678888864       45666665567788888887654433221    125788999999998655433 34433

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.44  E-value=0.25  Score=55.48  Aligned_cols=368  Identities=12%  Similarity=0.069  Sum_probs=186.7

Q ss_pred             CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeeccc----ccCeeEEEEeCCCcEEEEecCCCcEEEEEecCC
Q 005656            3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAH----DNAIISLHFFANEPVLMSASADNSIKMWIFDTT   78 (685)
Q Consensus         3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h----~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~   78 (685)
                      ..|.++....+|. +.+ |+.+| |..++..+++.........    ...|.++...+++..|..|+. +-+..++....
T Consensus       146 ~~i~~i~~d~~g~-lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~  221 (758)
T 3ott_A          146 NTIYSIIRTKDNQ-IYV-GTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTG  221 (758)
T ss_dssp             SCEEEEEECTTCC-EEE-EETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTT
T ss_pred             CeEEEEEEcCCCC-EEE-EeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCC
Confidence            3578888888887 433 45444 7888987776433211111    234888888877664444443 34666665433


Q ss_pred             CCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeee
Q 005656           79 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD  158 (685)
Q Consensus        79 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (685)
                        .......+  ....|.++....+|... .|+.+ -+.+++..++.... +....         .....+....+.++-
T Consensus       222 --~~~~~~~l--~~~~i~~i~~d~~g~lW-igT~~-Gl~~~~~~~~~~~~-~~~~~---------~~~~~l~~~~i~~i~  285 (758)
T 3ott_A          222 --QIKQTEAF--HNNSIKSLALDGNGDLL-AGTDN-GLYVYHNDTTPLQH-IIHDS---------RNIQSLTNNIIWNIF  285 (758)
T ss_dssp             --EEEEEEEE--EEEEEEEEEECTTCCEE-EEETT-EEEEECCTTSCCEE-ECCCT---------TCTTSCSCSCEEEEE
T ss_pred             --eEEeccCC--CCCeEEEEEEcCCCCEE-EEeCC-ceeEEecCCCcEEE-EEcCC---------CCcCcCCcCeEEEEE
Confidence              11111111  22347777776667544 45544 47777765443221 11000         000001111111111


Q ss_pred             cccccccCCcceEEEEcCCceEEEEEcCccccCceee--cCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcc
Q 005656          159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL--RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS  236 (685)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~  236 (685)
                          ...+. .+-.+. ..+ +....... .......  .........|.++....+|+.- +|+.+| +..++..++..
T Consensus       286 ----~D~~g-~lWiGT-~~G-l~~~~~~~-~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lW-iGt~~G-l~~~~~~~~~~  355 (758)
T 3ott_A          286 ----ADQEH-NIWLGT-DYG-ISLSRYNS-ALQFIPISQITGTGDGNQFYSLFRDSKGFYW-FGGANG-LIRFTDPAGER  355 (758)
T ss_dssp             ----ECTTC-CEEEEE-SSS-EEEECCCC--CEEEEHHHHSCSCCCCBEEEEEECTTCCEE-EEETTE-EEEESCTTSSC
T ss_pred             ----EcCCC-CEEEEe-CCc-ccccccCC-ceeEEecccCCCCCCCceEEEEEEcCCCCEE-EeeCCc-ceeeccccccc
Confidence                11111 111111 222 22221111 0000000  0001223468888888777654 455554 77777665422


Q ss_pred             cc--ccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEee-------cCCceeEEEEeecCCE
Q 005656          237 RG--SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE-------VGCSLVKIVYHRVNGL  307 (685)
Q Consensus       237 ~~--~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------~~~~i~~~~~~~~~~~  307 (685)
                      ..  .+.... ....-....|.++.-+.+|++.+ |+ ++-+..||..+++......       ....|.++...++| .
T Consensus       356 ~~~~~~~~~~-~~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g-~  431 (758)
T 3ott_A          356 HDAIWYRMGD-KTYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAG-Q  431 (758)
T ss_dssp             CCCEEECTTC-SSSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTS-E
T ss_pred             ceeEEeccCC-cCCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCC-C
Confidence            11  111000 00001234689999888887544 55 4679999988876543221       11346666665555 4


Q ss_pred             EEEEeCCCeEEEEEcCCC-----eeE---EEEe---c-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEe-
Q 005656          308 LATVADDLVIRLFDVVAL-----RMV---RKFE---G-HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH-  374 (685)
Q Consensus       308 l~~~~~dg~I~i~d~~~~-----~~~---~~~~---~-h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~-  374 (685)
                      |.+|+..+-+.++|..+.     ...   ..+.   + ....|.++...++|++.+.++..+-|..+|..+++...... 
T Consensus       432 lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~  511 (758)
T 3ott_A          432 LWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFAD  511 (758)
T ss_dssp             EEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTT
T ss_pred             EEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCC
Confidence            566776667888886531     111   1221   1 12358999999999866533334458889987765443221 


Q ss_pred             ---eccceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          375 ---VDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       375 ---~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                         ....+.++....+|.+.+.+  .+ ++..++..
T Consensus       512 ~~~~~~~~~~i~~d~~g~lWigt--~~-Gl~~~~~~  544 (758)
T 3ott_A          512 ELTGEKSPNYLLCDEDGLLWVGF--HG-GVMRINPK  544 (758)
T ss_dssp             TSCGGGCEEEEEECTTSCEEEEE--TT-EEEEECC-
T ss_pred             CcCCCcccceEEECCCCCEEEEe--cC-ceEEEecC
Confidence               12348889888888877654  34 78888743

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.41  E-value=0.27  Score=55.23  Aligned_cols=314  Identities=11%  Similarity=0.101  Sum_probs=170.7

Q ss_pred             CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCC
Q 005656            3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP   82 (685)
Q Consensus         3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~   82 (685)
                      ..|+||.-..+|.  |-.|+.+| +..||-.+.+............|.++....++. |..|+.+| +..+|..+.    
T Consensus        22 n~V~~I~qD~~G~--lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigT~~G-l~~yd~~~~----   92 (758)
T 3ott_A           22 SVVSCFLQDSEGL--IWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNTY-LYMGTDNG-ILVYNYRAD----   92 (758)
T ss_dssp             CCEEEEEECTTSC--EEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTTE-EEEEETTE-EEEEETTTT----
T ss_pred             ceEEEEEECCCCC--EEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCCc-EEEEeCCC-eEEEeCCCC----
Confidence            4689999998886  44566677 677774332211111111235688888777774 44444444 677876543    


Q ss_pred             ceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccc
Q 005656           83 RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI  162 (685)
Q Consensus        83 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (685)
                      +...........|.++.. .+| .|..++.+ -+..++..+++.. .+....     .                      
T Consensus        93 ~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~-~~~~~~-----~----------------------  141 (758)
T 3ott_A           93 RYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLT-SFDTRR-----N----------------------  141 (758)
T ss_dssp             EECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEE-EECHHH-----H----------------------
T ss_pred             EEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEE-EeccCC-----C----------------------
Confidence            111111111234565543 344 45556655 4667776443321 110000     0                      


Q ss_pred             cccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccc
Q 005656          163 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD  242 (685)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~  242 (685)
                                                        .  .....|.++....+|+..+ |+.+| +..|+..++........
T Consensus       142 ----------------------------------~--l~~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~  183 (758)
T 3ott_A          142 ----------------------------------G--LPNNTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNGKFEGIPLP  183 (758)
T ss_dssp             ----------------------------------C--CSCSCEEEEEECTTCCEEE-EETTE-EEEEETTTTEEEEECCC
T ss_pred             ----------------------------------C--cCCCeEEEEEEcCCCCEEE-EeCCC-HhhCccCCCceEEecCC
Confidence                                              0  1134577777777776544 55554 88888877654321110


Q ss_pred             ccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec-CCceeEEEEeecCCEEEEEeCCCeEEEEE
Q 005656          243 MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRLFD  321 (685)
Q Consensus       243 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~I~i~d  321 (685)
                        . ........|.++..++++..|..|+. +.+..+|..+++....... ...|.++....+|.+. +|+. +-+.+++
T Consensus       184 --~-~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igT~-~Gl~~~~  257 (758)
T 3ott_A          184 --V-HSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLL-AGTD-NGLYVYH  257 (758)
T ss_dssp             --C-CTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEE-EEET-TEEEEEC
T ss_pred             --C-ccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEE-EEeC-CceeEEe
Confidence              0 00012335889988887775555653 5688899877654332111 2457777777666644 4454 4588888


Q ss_pred             cCCCeeEEEEec-------CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEee--------ccceEEEEEcC
Q 005656          322 VVALRMVRKFEG-------HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV--------DVSITALSLSP  386 (685)
Q Consensus       322 ~~~~~~~~~~~~-------h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~--------~~~v~~v~~sp  386 (685)
                      ..+++.......       ....|.++....+|.+-+ |+..| +.++... . ....+..        ...|.++.-..
T Consensus       258 ~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~~~~-~-~~~~~~~~~~~~~~~~~~v~~i~~D~  333 (758)
T 3ott_A          258 NDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLSRYN-S-ALQFIPISQITGTGDGNQFYSLFRDS  333 (758)
T ss_dssp             CTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS-EEEECCC-C--CEEEEHHHHSCSCCCCBEEEEEECT
T ss_pred             cCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc-ccccccC-C-ceeEEecccCCCCCCCceEEEEEEcC
Confidence            877654322110       123588998888877444 44456 5554322 1 2222211        23488999888


Q ss_pred             CCCeEEEEEeCCCeEEEEEcC
Q 005656          387 NMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       387 dg~~Lat~~~d~~~I~lW~~~  407 (685)
                      +|.+.+.+  .+ ++..++.+
T Consensus       334 ~g~lWiGt--~~-Gl~~~~~~  351 (758)
T 3ott_A          334 KGFYWFGG--AN-GLIRFTDP  351 (758)
T ss_dssp             TCCEEEEE--TT-EEEEESCT
T ss_pred             CCCEEEee--CC-cceeeccc
Confidence            88766554  33 67777544

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.39  E-value=0.14  Score=51.53  Aligned_cols=212  Identities=13%  Similarity=0.216  Sum_probs=118.7

Q ss_pred             EEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEec
Q 005656            9 AFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFR   88 (685)
Q Consensus         9 ~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~   88 (685)
                      -.+|..+ ++|.-. ..++.|+|+++...+....  ....|.-=.|-.+.. |+-.+ +..|.-|+++...   .+.+.+
T Consensus        72 IMnP~~~-iiALra-g~~lQiFnle~K~klks~~--~~e~VvfWkWis~~~-l~lVT-~taVyHWsi~~~s---~P~kvF  142 (494)
T 1bpo_A           72 IMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISLNT-VALVT-DNAVYHWSMEGES---QPVKMF  142 (494)
T ss_dssp             EECSSSS-CEEEEE-TTEEEEEETTTTEEEEEEE--CSSCCCEEEEEETTE-EEEEC-SSEEEEEESSSSC---CCEEEE
T ss_pred             eeCCCCc-EEEEec-CCeEEEEchHHhhhhccee--cCCCceEEEecCCCe-EEEEc-CCeeEEecccCCC---Cchhhe
Confidence            3577766 777655 6889999999998888876  455677777766554 33332 4689999987633   222332


Q ss_pred             ccC----CCCCeEEEEecCCCEEEEEeC-------CCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeee
Q 005656           89 SGH----SAPPLCIRFYANGRHILSAGQ-------DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF  157 (685)
Q Consensus        89 ~~h----~~~v~~i~~~~~~~~l~s~s~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (685)
                      ..|    ...|..-..+++.++++..|-       .|.+.+|+.+.+.....-.  +                   ..+|
T Consensus       143 dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieG--h-------------------aa~F  201 (494)
T 1bpo_A          143 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEG--H-------------------AASF  201 (494)
T ss_dssp             ECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECC--S-------------------EEEE
T ss_pred             ecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchhee--e-------------------eeee
Confidence            222    345555666778888775542       3566677665443211100  0                   0000


Q ss_pred             ecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCC-cc
Q 005656          158 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG-IS  236 (685)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~-~~  236 (685)
                      .                       .+.+..           ...+..+.|++....        ..+.+++.++... ..
T Consensus       202 ~-----------------------~~~~~g-----------~~~~~~lf~fa~r~~--------~g~kLhi~Ei~~~~~~  239 (494)
T 1bpo_A          202 A-----------------------QFKMEG-----------NAEESTLFCFAVRGQ--------AGGKLHIIEVGTPPTG  239 (494)
T ss_dssp             E-----------------------EEECTT-----------CSSEEEEEEEEECST--------TCCEEEEEECSCCCTT
T ss_pred             E-----------------------EEecCC-----------CCCCceEEEEEEecC--------CCcEEEEEEcCCCccC
Confidence            0                       000000           011111222222111        1367888888543 11


Q ss_pred             cccccccccc---ccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec
Q 005656          237 RGSYLDMSER---SNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV  292 (685)
Q Consensus       237 ~~~~~~~~~~---~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  292 (685)
                      ...+......   ......+-..++.+++....+...+.-|.+.+||+.++.++..-+.
T Consensus       240 ~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrI  298 (494)
T 1bpo_A          240 NQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI  298 (494)
T ss_dssp             CCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             CCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecc
Confidence            1122111100   1113345567888999888898999999999999999988776554

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.37  E-value=0.017  Score=56.76  Aligned_cols=106  Identities=11%  Similarity=0.134  Sum_probs=58.3

Q ss_pred             CCCEEEEEecC-----CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC-----CeEEEEECC
Q 005656          213 CGNFAVLGTAG-----GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH-----GDIKVWDFK  282 (685)
Q Consensus       213 ~g~~l~~g~~d-----g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d-----g~i~iwd~~  282 (685)
                      +++.+++|+.+     ..+.+||+.++.....-. .+     ........+.+  +++.++.|+.+     ..+.+||+.
T Consensus       159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~-~p-----~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~  230 (301)
T 2vpj_A          159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTP-MA-----TKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIR  230 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECC-CS-----SCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETT
T ss_pred             CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCC-CC-----cccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCC
Confidence            56667777654     468999998876543211 00     11111122222  56677777654     468999998


Q ss_pred             CCceEEEeecC-CceeEEEEeecCCEEEEEeCC-----CeEEEEEcCCCe
Q 005656          283 GRDLKSRWEVG-CSLVKIVYHRVNGLLATVADD-----LVIRLFDVVALR  326 (685)
Q Consensus       283 ~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d-----g~I~i~d~~~~~  326 (685)
                      +.+-...-..+ ......+..-++++++.|+.+     ..+.+||+.+.+
T Consensus       231 ~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          231 TDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             TTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             CCcEEECCCCCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence            87654432222 111111222366777777655     367788887653

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.32  E-value=0.028  Score=55.10  Aligned_cols=147  Identities=12%  Similarity=0.053  Sum_probs=79.3

Q ss_pred             CCCEEEEEecC-----CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC-----CeEEEEECC
Q 005656          213 CGNFAVLGTAG-----GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH-----GDIKVWDFK  282 (685)
Q Consensus       213 ~g~~l~~g~~d-----g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d-----g~i~iwd~~  282 (685)
                      ++..+++|+.+     ..+.+||+.++.....-. .+    ... ..-..+.+  +++.++.|+.+     ..+.+||..
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~-~p----~~r-~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~  183 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGD-MQ----TAR-EGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPH  183 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEE-CS----SCC-BSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETT
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCC-CC----CCc-ccceEEEE--CCEEEEECCCCCCcccceEEEEeCC
Confidence            56666676543     368899988776543211 00    011 11112222  56677777654     458899988


Q ss_pred             CCceEEEeecCCc-eeEEEEeecCCEEEEEeCC-----CeEEEEEcCCCeeEEEE--ecCCCCeEEEEEcCCCCEEEEEe
Q 005656          283 GRDLKSRWEVGCS-LVKIVYHRVNGLLATVADD-----LVIRLFDVVALRMVRKF--EGHTDRITDFCFSEDGKWLLSSG  354 (685)
Q Consensus       283 ~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~d-----g~I~i~d~~~~~~~~~~--~~h~~~I~~l~~spdg~~l~s~s  354 (685)
                      +.+-...-..+.+ ....+..-++.+++.|+.+     ..+.+||+.+.+-...-  .........+.+  ++++++.|+
T Consensus       184 ~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG  261 (301)
T 2vpj_A          184 TGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAG  261 (301)
T ss_dssp             TTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECC
T ss_pred             CCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcC
Confidence            7755443222211 1111222356777777654     46899999877543221  111111222223  677777777


Q ss_pred             CC-----CcEEEEEcCCCce
Q 005656          355 MD-----GSLRIWDVILARQ  369 (685)
Q Consensus       355 ~D-----g~I~iwd~~~~~~  369 (685)
                      .+     ..|.+||..+.+-
T Consensus       262 ~~~~~~~~~v~~yd~~~~~W  281 (301)
T 2vpj_A          262 YDGNSLLSSIECYDPIIDSW  281 (301)
T ss_dssp             BCSSSBEEEEEEEETTTTEE
T ss_pred             cCCCcccccEEEEcCCCCeE
Confidence            55     3578888876543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.31  E-value=0.16  Score=50.42  Aligned_cols=109  Identities=18%  Similarity=0.232  Sum_probs=64.2

Q ss_pred             EEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEE--e---ecccccCeeEEEEeCC----CcEEEEe--cCCCcEEEE
Q 005656            5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSV--I---REAHDNAIISLHFFAN----EPVLMSA--SADNSIKMW   73 (685)
Q Consensus         5 V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~--~---~~~h~~~V~~l~~sp~----~~~l~s~--s~D~~v~iW   73 (685)
                      -+.|+|.|||+ ++++-...|.|++++..+++....  +   .....+....|+|+|+    +.+.++-  ..++.|.-|
T Consensus        34 P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~  112 (347)
T 3das_A           34 PWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRM  112 (347)
T ss_dssp             EEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEE
T ss_pred             ceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEE
Confidence            47899999998 777665589999998765543221  1   1123567899999995    4333332  234555555


Q ss_pred             EecCCC------CCCc-eeEecc-cCCCCCeEEEEecCCCEEEEEeCCC
Q 005656           74 IFDTTD------GDPR-LLRFRS-GHSAPPLCIRFYANGRHILSAGQDR  114 (685)
Q Consensus        74 d~~~~~------~~~~-~~~~~~-~h~~~v~~i~~~~~~~~l~s~s~dg  114 (685)
                      .++...      ...+ ++..+. +.......|.|.|||.+.++.+..+
T Consensus       113 ~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~  161 (347)
T 3das_A          113 LYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESG  161 (347)
T ss_dssp             EBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTT
T ss_pred             EeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCC
Confidence            554421      0112 222221 2223456799999997777665443

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.29  E-value=0.078  Score=51.84  Aligned_cols=164  Identities=7%  Similarity=0.023  Sum_probs=93.8

Q ss_pred             EEccCCCEEEEEe----cCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC-CCeEEEEECCC
Q 005656          209 TISACGNFAVLGT----AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-HGDIKVWDFKG  283 (685)
Q Consensus       209 ~~s~~g~~l~~g~----~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-dg~i~iwd~~~  283 (685)
                      .+++++++++...    ....|+..++..... ..+.        .+..    ..++++++.|+-.+. ...|..-++.+
T Consensus       110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~-~~lt--------~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g  176 (302)
T 3s25_A          110 YASLIGNYIYYLHYDTQTATSLYRIRIDGEEK-KKIK--------NHYL----FTCNTSDRYFYYNNPKNGQLYRYDTAS  176 (302)
T ss_dssp             EEEEETTEEEEEEESSSSCEEEEEEETTSCCC-EEEE--------SSCC----CCSEEETTEEEEECTTTCCEEEEETTT
T ss_pred             EEEEeCCEEEEEeecCCCCceEEEEECCCCCe-EEEe--------CCCc----eEeeEECCEEEEEeCCCceEEEEECCC
Confidence            6777888888776    344666667664332 2221        2211    345777888876664 57888888877


Q ss_pred             CceEEEeecCCceeEEEEeecCCEEEEEeCC--CeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeC--CCcE
Q 005656          284 RDLKSRWEVGCSLVKIVYHRVNGLLATVADD--LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM--DGSL  359 (685)
Q Consensus       284 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~--Dg~I  359 (685)
                      +.....+..  ... ..++|++++|+-...+  ..|..-++.... ...+..  ..+  ..|+|++++|..++.  .+.|
T Consensus       177 ~~~~~l~~~--~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i  248 (302)
T 3s25_A          177 QSEALFYDC--NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE--ANI--EHYNVYGSLIFYQRGGDNPAL  248 (302)
T ss_dssp             TEEEEEECS--CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSC--SCE--EEEEEETTEEEEEECSSSCEE
T ss_pred             CCEEEEeCC--Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC--CCc--ceEEECCCEEEEEECCCCcEE
Confidence            665444332  222 3466999988776543  467777776554 233332  233  347888998886642  3456


Q ss_pred             EEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeC
Q 005656          360 RIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVD  397 (685)
Q Consensus       360 ~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d  397 (685)
                      ..-++.... ...+... .+.  .+++.+.+|+-+...
T Consensus       249 ~~~~~DG~~-r~~l~~~-~~~--~i~i~~d~Iy~td~~  282 (302)
T 3s25_A          249 CVVKNDGTG-FKELAKG-EFC--NINVTSQYVYFTDFV  282 (302)
T ss_dssp             EEEETTSCC-CEEEEES-CEE--EEEECSSEEEEEETT
T ss_pred             EEEECCCCc-cEEeeCC-ccc--eEEEeCCEEEEEECC
Confidence            666654333 3333222 232  344566666665433

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.28  E-value=0.039  Score=55.58  Aligned_cols=143  Identities=13%  Similarity=0.176  Sum_probs=97.5

Q ss_pred             EEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-----CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCe-------
Q 005656          259 ACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-----CSLVKIVYHRVNGLLATVADDLVIRLFDVVALR-------  326 (685)
Q Consensus       259 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~-------  326 (685)
                      ....+|..++.+- ++.||.-++......+.+..+     ..+..+..+|+|++||..+. ..|.|..+..+.       
T Consensus        27 ~~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~  104 (452)
T 3pbp_A           27 FSSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVS  104 (452)
T ss_dssp             EEETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHH
T ss_pred             EEEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccc
Confidence            3345666666654 588998888754444444443     36788999999999999864 588888887321       


Q ss_pred             -----eEEEEec------CCCCeEEEEEcCC---CCEEEEEeCCCcEEEEEcCCCc--ee------eEEeec---cceEE
Q 005656          327 -----MVRKFEG------HTDRITDFCFSED---GKWLLSSGMDGSLRIWDVILAR--QI------DAIHVD---VSITA  381 (685)
Q Consensus       327 -----~~~~~~~------h~~~I~~l~~spd---g~~l~s~s~Dg~I~iwd~~~~~--~i------~~~~~~---~~v~~  381 (685)
                           ..+.+.-      ...+|..+.|+|-   +..|++-..|+.||+||+....  +.      ..+...   ..|.+
T Consensus       105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S  184 (452)
T 3pbp_A          105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITD  184 (452)
T ss_dssp             HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEE
T ss_pred             cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEE
Confidence                 1233332      2567999999994   5689999999999999998522  12      111111   34899


Q ss_pred             EEEcCCCCeEEEEE--eCCCeEEEE
Q 005656          382 LSLSPNMDVLATAH--VDQNGVYLW  404 (685)
Q Consensus       382 v~~spdg~~Lat~~--~d~~~I~lW  404 (685)
                      ++|+++|-.|...+  .+| -||-.
T Consensus       185 ~~Fg~~~lTLYvl~~t~~G-DIYAl  208 (452)
T 3pbp_A          185 LEFSKDGLTLYCLNTTEGG-DIFAF  208 (452)
T ss_dssp             EEECTTSSCEEEEECTTSC-EEEEE
T ss_pred             EEEcCCCcEEEEEecCCCC-CEEEE
Confidence            99999888888766  555 55543

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.28  E-value=0.018  Score=56.51  Aligned_cols=106  Identities=15%  Similarity=0.070  Sum_probs=57.4

Q ss_pred             CCCEEEEEec-------CCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC-----CeEEEEE
Q 005656          213 CGNFAVLGTA-------GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH-----GDIKVWD  280 (685)
Q Consensus       213 ~g~~l~~g~~-------dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d-----g~i~iwd  280 (685)
                      +++..++|+.       ...+.+||+.++.....-. .+    ... .....+.+  +++.++.|+.+     ..+.+||
T Consensus       155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~-~p----~~r-~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd  226 (302)
T 2xn4_A          155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAE-MS----TRR-SGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYD  226 (302)
T ss_dssp             TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECC-CS----SCC-BSCEEEEE--TTEEEEECCBSSSSBCCCEEEEE
T ss_pred             CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCC-Cc----ccc-ccccEEEE--CCEEEEECCCCCCcccceEEEEe
Confidence            5566666654       2458899998876543211 00    011 11122222  56777777754     3688999


Q ss_pred             CCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCC-----eEEEEEcCCCe
Q 005656          281 FKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDL-----VIRLFDVVALR  326 (685)
Q Consensus       281 ~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg-----~I~i~d~~~~~  326 (685)
                      ..+.+-...-... ......+...++.+++.|+.++     .+.+||+.+.+
T Consensus       227 ~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          227 PTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             TTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CCCCCEeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence            9877544332222 1111112223667777777553     47888887764

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.25  E-value=0.076  Score=52.09  Aligned_cols=105  Identities=12%  Similarity=0.003  Sum_probs=56.8

Q ss_pred             CCCEEEEEec---------CCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC-----CeEEE
Q 005656          213 CGNFAVLGTA---------GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH-----GDIKV  278 (685)
Q Consensus       213 ~g~~l~~g~~---------dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d-----g~i~i  278 (685)
                      +++..++|+.         ...+.+||+.+......-. .+     .....-..+.+  +++.++.|+.+     ..+.+
T Consensus       149 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~-~p-----~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~  220 (306)
T 3ii7_A          149 NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCP-MI-----EARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEY  220 (306)
T ss_dssp             TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECC-CS-----SCCBSCEEEEE--TTEEEEECCEETTEEBCCEEE
T ss_pred             CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCC-cc-----chhhcceEEEE--CCEEEEEeCCCCCCCCceEEE
Confidence            5566666653         3458899998875443211 00     11111122222  56667776643     35889


Q ss_pred             EECCCCceEEEeecC--CceeEEEEeecCCEEEEEeCC-----CeEEEEEcCCCe
Q 005656          279 WDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADD-----LVIRLFDVVALR  326 (685)
Q Consensus       279 wd~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d-----g~I~i~d~~~~~  326 (685)
                      ||..+.+-...-..+  ..-..++. -++.+++.|+.+     ..+.+||+.+.+
T Consensus       221 yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          221 YDIKLNEWKMVSPMPWKGVTVKCAA-VGSIVYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             EETTTTEEEECCCCSCCBSCCEEEE-ETTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             eeCCCCcEEECCCCCCCccceeEEE-ECCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence            999876544332222  11112222 267778888754     468889988753

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.19  E-value=0.029  Score=55.09  Aligned_cols=145  Identities=16%  Similarity=0.148  Sum_probs=77.2

Q ss_pred             CCCEEEEEecCC-----cEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC-------CeEEEEE
Q 005656          213 CGNFAVLGTAGG-----WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH-------GDIKVWD  280 (685)
Q Consensus       213 ~g~~l~~g~~dg-----~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d-------g~i~iwd  280 (685)
                      ++..+++|+.++     .+.+||+.+......-. .+     ........+.+  +++.++.|+.+       ..+.+||
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~-~p-----~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd  179 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAP-MN-----TRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYN  179 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECC-CS-----SCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCC-CC-----CcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEe
Confidence            566777776553     58889988776543211 00     11111122222  45666666542       3588999


Q ss_pred             CCCCceEEEeecC--CceeEEEEeecCCEEEEEeCC-----CeEEEEEcCCCeeEEE--EecCCCCeEEEEEcCCCCEEE
Q 005656          281 FKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADD-----LVIRLFDVVALRMVRK--FEGHTDRITDFCFSEDGKWLL  351 (685)
Q Consensus       281 ~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d-----g~I~i~d~~~~~~~~~--~~~h~~~I~~l~~spdg~~l~  351 (685)
                      ..+.+-...-..+  ..-.+++ .-++.+++.|+.+     ..+.+||+.+.+-...  +......-..+.+  ++++++
T Consensus       180 ~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~i~v  256 (302)
T 2xn4_A          180 ATTNEWTYIAEMSTRRSGAGVG-VLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV--NGLLYV  256 (302)
T ss_dssp             TTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEE
T ss_pred             CCCCcEEECCCCccccccccEE-EECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE--CCEEEE
Confidence            9877544332222  1111222 2357777777654     3689999987653322  1111111122222  677777


Q ss_pred             EEeCCC-----cEEEEEcCCCc
Q 005656          352 SSGMDG-----SLRIWDVILAR  368 (685)
Q Consensus       352 s~s~Dg-----~I~iwd~~~~~  368 (685)
                      .|+.++     .+.+||..+.+
T Consensus       257 ~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          257 VGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             ECCBCSSSBCCCEEEEETTTTE
T ss_pred             ECCcCCCcccccEEEEcCCCCe
Confidence            777553     47888877654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.18  E-value=0.091  Score=52.22  Aligned_cols=189  Identities=10%  Similarity=0.043  Sum_probs=98.8

Q ss_pred             CCCeEEEEEccC---CCEEEEEe---cCCcEEEEECCCCcc----c---cc-cccccccccCCCCcCEEEEEEcCCCCEE
Q 005656          202 PTAVKACTISAC---GNFAVLGT---AGGWIERFNLQSGIS----R---GS-YLDMSERSNYAHNGEVVGVACDSTNTLM  267 (685)
Q Consensus       202 ~~~v~~~~~s~~---g~~l~~g~---~dg~i~~~d~~~~~~----~---~~-~~~~~~~~~~~h~~~v~~l~~~~~~~~l  267 (685)
                      ......++++|+   +..+++.+   .++.|..|.+..+..    .   .. +...+  ....|.  ...|.|.|+|.+.
T Consensus        79 ~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p--~~~~H~--g~~l~fgpDG~Ly  154 (347)
T 3das_A           79 EGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIP--KGVIHN--GGRIAFGPDKMLY  154 (347)
T ss_dssp             TBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEEC--CCSSCC--CCCEEECTTSCEE
T ss_pred             CCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCC--CCCCcc--CccccCCCCCCEE
Confidence            456788999985   45555543   356777777765321    1   11 11100  112343  4579999999877


Q ss_pred             EEEEC-------------CCeEEEEECCCCc-------eEEEee-cCCceeEEEEeecCCEEEEEe-CCCeEEEEEcCCC
Q 005656          268 ISAGY-------------HGDIKVWDFKGRD-------LKSRWE-VGCSLVKIVYHRVNGLLATVA-DDLVIRLFDVVAL  325 (685)
Q Consensus       268 ~s~s~-------------dg~i~iwd~~~~~-------~~~~~~-~~~~i~~~~~~~~~~~l~~~~-~dg~I~i~d~~~~  325 (685)
                      ++.+.             .|.|.-.+....-       -...+. .......++|+|+|.+.++-. .|+.=.|.-+..+
T Consensus       155 vt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G  234 (347)
T 3das_A          155 AGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPG  234 (347)
T ss_dssp             EECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTT
T ss_pred             EEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCC
Confidence            77542             2455555544220       001122 224567899999877555432 2322222222221


Q ss_pred             e------------------eEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcee----eEEee-ccceEEE
Q 005656          326 R------------------MVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI----DAIHV-DVSITAL  382 (685)
Q Consensus       326 ~------------------~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i----~~~~~-~~~v~~v  382 (685)
                      .                  ++..+..+......++|. +|..++..-..+.|....+..+..+    ..+.. ...+..|
T Consensus       235 ~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv  313 (347)
T 3das_A          235 DNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTV  313 (347)
T ss_dssp             CBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEE
T ss_pred             CEecCCcccCCCCCccccCCcEecCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEE
Confidence            1                  122332222356778886 4555555555566666666544321    12221 2348999


Q ss_pred             EEcCCCCeEEEEE
Q 005656          383 SLSPNMDVLATAH  395 (685)
Q Consensus       383 ~~spdg~~Lat~~  395 (685)
                      +..|||.++++..
T Consensus       314 ~~~pDG~lyv~td  326 (347)
T 3das_A          314 APAGGDKLWLVTS  326 (347)
T ss_dssp             EEEETTEEEEEEC
T ss_pred             EECCCCcEEEEEc
Confidence            9999997766654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.13  E-value=0.021  Score=56.17  Aligned_cols=145  Identities=10%  Similarity=0.075  Sum_probs=77.8

Q ss_pred             CCCEEEEEecC------CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC---------CCeEE
Q 005656          213 CGNFAVLGTAG------GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY---------HGDIK  277 (685)
Q Consensus       213 ~g~~l~~g~~d------g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~---------dg~i~  277 (685)
                      ++..+++|+.+      ..+.+||+.+......-. .+. ....|    ..+.+  +++.++.|+.         -..+.
T Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~-~p~-~r~~~----~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~  172 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPS-MLT-QRCSH----GMVEA--NGLIYVCGGSLGNNVSGRVLNSCE  172 (306)
T ss_dssp             TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECC-CSS-CCBSC----EEEEE--TTEEEEECCEESCTTTCEECCCEE
T ss_pred             CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCC-CcC-Cccee----EEEEE--CCEEEEECCCCCCCCcccccceEE
Confidence            56666777654      468999998876433211 000 01112    12222  5566666653         34588


Q ss_pred             EEECCCCceEEEeecC--CceeEEEEeecCCEEEEEeCC-----CeEEEEEcCCCeeEEE--EecCCCCeEEEEEcCCCC
Q 005656          278 VWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADD-----LVIRLFDVVALRMVRK--FEGHTDRITDFCFSEDGK  348 (685)
Q Consensus       278 iwd~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d-----g~I~i~d~~~~~~~~~--~~~h~~~I~~l~~spdg~  348 (685)
                      +||..+.+-...-...  ..-..++. -++++++.|+.+     ..+.+||+.+.+-...  +.........+.+  +++
T Consensus       173 ~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~  249 (306)
T 3ii7_A          173 VYDPATETWTELCPMIEARKNHGLVF-VKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSI  249 (306)
T ss_dssp             EEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTE
T ss_pred             EeCCCCCeEEECCCccchhhcceEEE-ECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCE
Confidence            9999887544332222  11112222 256677777643     3688999987643221  1111112223333  677


Q ss_pred             EEEEEeCC-----CcEEEEEcCCCc
Q 005656          349 WLLSSGMD-----GSLRIWDVILAR  368 (685)
Q Consensus       349 ~l~s~s~D-----g~I~iwd~~~~~  368 (685)
                      +++.|+.+     ..+.+||..+.+
T Consensus       250 i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          250 VYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             EEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             EEEEeCcCCCeeeeeEEEEcCCCCe
Confidence            78888754     457888887654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.10  E-value=0.063  Score=53.01  Aligned_cols=107  Identities=9%  Similarity=-0.023  Sum_probs=56.6

Q ss_pred             cCCCEEEEEec------CCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCC-----eEEEEE
Q 005656          212 ACGNFAVLGTA------GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG-----DIKVWD  280 (685)
Q Consensus       212 ~~g~~l~~g~~------dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg-----~i~iwd  280 (685)
                      .+++.++.|+.      ...+.+||+.+..-...-. .+     .....-..+.+  +++.++.|+.++     .+.+||
T Consensus       147 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~-~p-----~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd  218 (315)
T 4asc_A          147 HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAP-MQ-----TARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYS  218 (315)
T ss_dssp             ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCC-CS-----SCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEE
T ss_pred             ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCC-CC-----CchhceEEEEE--CCEEEEEeccCCCCccceEEEEE
Confidence            35566677765      2468999998875443211 00     11111112222  567777777654     588899


Q ss_pred             CCCCceEEEeecCC-ceeEEEEeecCCEEEEEeCCC--------------eEEEEEcCCCe
Q 005656          281 FKGRDLKSRWEVGC-SLVKIVYHRVNGLLATVADDL--------------VIRLFDVVALR  326 (685)
Q Consensus       281 ~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg--------------~I~i~d~~~~~  326 (685)
                      ..+.+-...-..+. .....+..-++++++.|+.++              .+.+||+.+.+
T Consensus       219 ~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  279 (315)
T 4asc_A          219 ITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK  279 (315)
T ss_dssp             TTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred             CCCCeEEECCCCCCcccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence            98775443322221 111112223567777776532              36677776654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.06  E-value=0.0037  Score=61.94  Aligned_cols=152  Identities=11%  Similarity=0.026  Sum_probs=83.8

Q ss_pred             ecCCcEEEEECCCCccccccccccccccCCCCcCEEE---EEE-c----CCCCEEEEEECCCeEEEEECCCCceEEEeec
Q 005656          221 TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVG---VAC-D----STNTLMISAGYHGDIKVWDFKGRDLKSRWEV  292 (685)
Q Consensus       221 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~---l~~-~----~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  292 (685)
                      +.||.|+.++..+|.....+.....    ....++..   ..+ +    ..+..+++|+.+|.+...|+.+|+.+..+..
T Consensus        64 ~~dG~l~a~~~~~G~~~~~~~~~~l----v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           64 FGDGNIYYFNAHQGLQKLPLSIRQL----VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             STTTEEEEEETTTEEEEEEEEHHHH----HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             CCCCEEEEEECCCCcEEeeeccccc----eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence            6899999999888855433321100    11222221   001 0    1355788999999999999999999999876


Q ss_pred             CCcee--------EEEEe-----ecCCEEEEEeCCCeEEEEEcCCCee----EEEEecCCCC--e-EEEEEcCCCCEEEE
Q 005656          293 GCSLV--------KIVYH-----RVNGLLATVADDLVIRLFDVVALRM----VRKFEGHTDR--I-TDFCFSEDGKWLLS  352 (685)
Q Consensus       293 ~~~i~--------~~~~~-----~~~~~l~~~~~dg~I~i~d~~~~~~----~~~~~~h~~~--I-~~l~~spdg~~l~s  352 (685)
                      ..+..        |....     ..+..++.+..+..+.+.+ ++|+.    ......+...  + ..-..+.|+.+ +.
T Consensus       140 ~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~  217 (339)
T 2be1_A          140 GSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IA  217 (339)
T ss_dssp             TCBCC--------------------CCEEEEEEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EE
T ss_pred             CCCcccccccccccccccccccccCCCeEEEecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCcE-EE
Confidence            53321        11111     1245677777777777766 44431    1111111100  0 00011234666 44


Q ss_pred             EeCCCcEEEEEcCCCceee-EEeeccc
Q 005656          353 SGMDGSLRIWDVILARQID-AIHVDVS  378 (685)
Q Consensus       353 ~s~Dg~I~iwd~~~~~~i~-~~~~~~~  378 (685)
                      ++.||.|.-+|..+|..+. .....++
T Consensus       218 ~~~dg~v~A~d~~~G~~~W~~~~l~sP  244 (339)
T 2be1_A          218 PFRDKSLLASDLDFRIARWVSPTFPGI  244 (339)
T ss_dssp             EETTTEEEEECSTTCCEEEECCCCSSC
T ss_pred             ECCCCEEEEEECCCCcEEEEeecCCCC
Confidence            6788999999988888765 4444444

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.97  E-value=0.01  Score=58.77  Aligned_cols=113  Identities=9%  Similarity=0.076  Sum_probs=66.6

Q ss_pred             EEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEe---CCCcEEEEe-cCCCcEEEEEecCCCCCCceeEeccc--
Q 005656           17 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFF---ANEPVLMSA-SADNSIKMWIFDTTDGDPRLLRFRSG--   90 (685)
Q Consensus        17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~s---p~~~~l~s~-s~D~~v~iWd~~~~~~~~~~~~~~~~--   90 (685)
                      ++++++.||.|.-.|.++|+....+......++....-.   .++..++.. +.||.+..++...+.  .+.-.....  
T Consensus        12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~--~~~~~~~~~lv   89 (339)
T 2be1_A           12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGL--QKLPLSIRQLV   89 (339)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEE--EEEEEEHHHHH
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCc--EEeeeccccce
Confidence            688899999999999999999998873321233221100   122333333 578888777755431  111111100  


Q ss_pred             CCCCCeE---EEE-----ecCCCEEEEEeCCCceEEEEeecCceeeEec
Q 005656           91 HSAPPLC---IRF-----YANGRHILSAGQDRAFRLFSVIQDQQSRELS  131 (685)
Q Consensus        91 h~~~v~~---i~~-----~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~  131 (685)
                      ...++..   ...     ...+..+++++.+|.+...|+.+++....+.
T Consensus        90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~  138 (339)
T 2be1_A           90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFG  138 (339)
T ss_dssp             TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred             eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence            1112111   000     0135578999999999999999999877765

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=96.92  E-value=0.13  Score=53.50  Aligned_cols=101  Identities=16%  Similarity=0.205  Sum_probs=74.2

Q ss_pred             CEEEEEEcCCCCEEEEEE-CCCeEEEEECCCC------c-------eEEEeecCCceeEEEEeecCCEEEEEeCCCeEEE
Q 005656          254 EVVGVACDSTNTLMISAG-YHGDIKVWDFKGR------D-------LKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRL  319 (685)
Q Consensus       254 ~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~------~-------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i  319 (685)
                      ...++.++|+|++++.++ .+.++.++|+...      +       .......+-.....+|.++|....+..-|..|.-
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvk  403 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVK  403 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEE
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEE
Confidence            345788999999988776 6789999998741      1       2444555677888999999966666678999999


Q ss_pred             EEcCCC----------eeEEEEecCCCCeEEEE-----EcCCCCEEEEEe
Q 005656          320 FDVVAL----------RMVRKFEGHTDRITDFC-----FSEDGKWLLSSG  354 (685)
Q Consensus       320 ~d~~~~----------~~~~~~~~h~~~I~~l~-----~spdg~~l~s~s  354 (685)
                      |++...          ..+.++.-|-.+-.-.+     -.|||+||++..
T Consensus       404 Wni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          404 WNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             EEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred             EeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence            999764          56677776655432221     267999999985

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.85  E-value=0.58  Score=48.66  Aligned_cols=108  Identities=17%  Similarity=0.292  Sum_probs=61.7

Q ss_pred             EEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeE--Eeec-----ccccCeeEEEEeCC---CcEE-EEecC-------
Q 005656            5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQS--VIRE-----AHDNAIISLHFFAN---EPVL-MSASA-------   66 (685)
Q Consensus         5 V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~--~~~~-----~h~~~V~~l~~sp~---~~~l-~s~s~-------   66 (685)
                      -++|+|.|||+ ++++-...+.|++++..+++...  .+..     ...+....|+|+|+   +..| ++-+.       
T Consensus        29 P~~~a~~pdG~-l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~  107 (454)
T 1cru_A           29 PHALLWGPDNQ-IWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD  107 (454)
T ss_dssp             EEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred             ceEEEEcCCCc-EEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence            46899999998 77665444579888866554322  2221     12456789999995   4444 43322       


Q ss_pred             -----CCcEEEEEecCCCCC---Cc-eeEecc-cCCCCCeEEEEecCCCEEEEEeCC
Q 005656           67 -----DNSIKMWIFDTTDGD---PR-LLRFRS-GHSAPPLCIRFYANGRHILSAGQD  113 (685)
Q Consensus        67 -----D~~v~iWd~~~~~~~---~~-~~~~~~-~h~~~v~~i~~~~~~~~l~s~s~d  113 (685)
                           ...|.-|+++.....   .+ ++..+. ........|.|.|||.+.++.+..
T Consensus       108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~  164 (454)
T 1cru_A          108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQ  164 (454)
T ss_dssp             CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCT
T ss_pred             cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCC
Confidence                 124555554432211   11 222121 122346889999999877766543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.80  E-value=0.095  Score=51.49  Aligned_cols=105  Identities=11%  Similarity=0.037  Sum_probs=57.6

Q ss_pred             CCCEEEEEecC-----CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC-----CeEEEEECC
Q 005656          213 CGNFAVLGTAG-----GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH-----GDIKVWDFK  282 (685)
Q Consensus       213 ~g~~l~~g~~d-----g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d-----g~i~iwd~~  282 (685)
                      ++..+++|+.+     ..+.+||+.+......-. .+     ........+.+  +++.++.|+.+     ..+.+||+.
T Consensus       168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~-~p-----~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~  239 (308)
T 1zgk_A          168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITA-MN-----TIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVE  239 (308)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCC-CS-----SCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETT
T ss_pred             CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCC-CC-----CccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCC
Confidence            56666777654     468999998775543211 00     11111122222  56677777654     468999998


Q ss_pred             CCceEEEeecC--CceeEEEEeecCCEEEEEeCC-----CeEEEEEcCCCe
Q 005656          283 GRDLKSRWEVG--CSLVKIVYHRVNGLLATVADD-----LVIRLFDVVALR  326 (685)
Q Consensus       283 ~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d-----g~I~i~d~~~~~  326 (685)
                      +.+-...-..+  ..-.+++. -++++++.|+.+     ..+.+||+.+.+
T Consensus       240 ~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          240 TETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             TTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCcEEECCCCCCCccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence            77544332222  11112222 356777777644     357788887654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.77  E-value=0.14  Score=50.57  Aligned_cols=107  Identities=13%  Similarity=0.051  Sum_probs=55.4

Q ss_pred             cCCCEEEEEec------CCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC-----CeEEEEE
Q 005656          212 ACGNFAVLGTA------GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH-----GDIKVWD  280 (685)
Q Consensus       212 ~~g~~l~~g~~------dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d-----g~i~iwd  280 (685)
                      .++...++|+.      ...+.+||+.+......-. .+     ........+.+  +++.++.|+.+     ..+.+||
T Consensus       157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~-~p-----~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd  228 (318)
T 2woz_A          157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAP-MK-----TPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFD  228 (318)
T ss_dssp             ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECC-CS-----SCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEE
T ss_pred             ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCC-CC-----CCcccceEEEE--CCEEEEEcCcCCCCccceEEEEE
Confidence            35666666653      2469999998876443211 00     11111122222  56677777643     3577899


Q ss_pred             CCCCceEEEeecCCc-eeEEEEeecCCEEEEEeCC--------------CeEEEEEcCCCe
Q 005656          281 FKGRDLKSRWEVGCS-LVKIVYHRVNGLLATVADD--------------LVIRLFDVVALR  326 (685)
Q Consensus       281 ~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~d--------------g~I~i~d~~~~~  326 (685)
                      +.+.+-...-..+.+ ....+...++.+++.|+.+              ..+.+||+.+.+
T Consensus       229 ~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  289 (318)
T 2woz_A          229 LKTNKWEVMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE  289 (318)
T ss_dssp             TTTCCEEECCCCSSCCBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred             CCCCeEEECCCCCCcccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence            887654432222211 1111223356677776643              346777777654

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.58  E-value=0.13  Score=51.64  Aligned_cols=141  Identities=7%  Similarity=-0.061  Sum_probs=68.1

Q ss_pred             CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC------CCeEEEEEC--CCCceEEEeec--C
Q 005656          224 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY------HGDIKVWDF--KGRDLKSRWEV--G  293 (685)
Q Consensus       224 g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~------dg~i~iwd~--~~~~~~~~~~~--~  293 (685)
                      ..+.+||+.+......-. .+    ....... +++.. +++.++.|+.      ...+..||+  .+.+-...-..  .
T Consensus       168 ~~v~~yd~~~~~W~~~~~-~p----~~~~~~~-~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~  240 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGE-SP----WYGTAGA-AVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSP  240 (357)
T ss_dssp             CEEEEEETTTTEEEEEEE-CS----SCCCBSC-EEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTT
T ss_pred             ccEEEEeCCCCcEEECCC-CC----CCCcccc-cEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCC
Confidence            578999998876543311 00    0111111 22222 4566666653      235777877  44332221111  1


Q ss_pred             C-ceeEEEEeecCCEEEEEeCC----------------------CeEEEEEcCCCe--eEEEEecCCCCeEEEEEcCCCC
Q 005656          294 C-SLVKIVYHRVNGLLATVADD----------------------LVIRLFDVVALR--MVRKFEGHTDRITDFCFSEDGK  348 (685)
Q Consensus       294 ~-~i~~~~~~~~~~~l~~~~~d----------------------g~I~i~d~~~~~--~~~~~~~h~~~I~~l~~spdg~  348 (685)
                      . .....+...++.+++.|+.+                      ..+.+||+.+.+  .+..+......-.++  ..+++
T Consensus       241 ~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~  318 (357)
T 2uvk_A          241 DGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSL--PWNNS  318 (357)
T ss_dssp             TCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEE--EETTE
T ss_pred             cccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeE--EeCCE
Confidence            1 11222334466777777632                      257889988653  333333222222222  33778


Q ss_pred             EEEEEeCCC------cEEEEEcCCCceeeEE
Q 005656          349 WLLSSGMDG------SLRIWDVILARQIDAI  373 (685)
Q Consensus       349 ~l~s~s~Dg------~I~iwd~~~~~~i~~~  373 (685)
                      +++.|+.++      .|.++++.+++.+...
T Consensus       319 i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~  349 (357)
T 2uvk_A          319 LLIIGGETAGGKAVTDSVLITVKDNKVTVQN  349 (357)
T ss_dssp             EEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred             EEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence            888888543      3666688887766544

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.58  E-value=0.15  Score=51.34  Aligned_cols=145  Identities=18%  Similarity=0.221  Sum_probs=95.0

Q ss_pred             EEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCC--CCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc-
Q 005656          209 TISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYA--HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD-  285 (685)
Q Consensus       209 ~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~-  285 (685)
                      ....+|..++++.. +.|+.-++..+..-+.+..      ..  .-..|..+..+|+|++|+..+ +..|.|-.+..+. 
T Consensus        27 ~~~~n~t~i~~a~~-n~iR~~~i~~~~~Yk~L~~------~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~   98 (452)
T 3pbp_A           27 FSSQNGTRIVFIQD-NIIRWYNVLTDSLYHSLNF------SRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYS   98 (452)
T ss_dssp             EEETTTTEEEEEET-TEEEEEETTTCSSCEEEEC------TTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCS
T ss_pred             EEEcCCCEEEEEEC-CEEEEEECCCCCcceEEec------CcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccc
Confidence            44455666655543 6777778775432222210      01  123577899999999998886 5688888887321 


Q ss_pred             -----------eEEEeec-------CCceeEEEEeecC---CEEEEEeCCCeEEEEEcCCC--eeEEEEe---------c
Q 005656          286 -----------LKSRWEV-------GCSLVKIVYHRVN---GLLATVADDLVIRLFDVVAL--RMVRKFE---------G  333 (685)
Q Consensus       286 -----------~~~~~~~-------~~~i~~~~~~~~~---~~l~~~~~dg~I~i~d~~~~--~~~~~~~---------~  333 (685)
                                 ....+..       ..+|..+.|||-+   ..|++-..|+.|++||+...  ++. .+.         .
T Consensus        99 ~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~  177 (452)
T 3pbp_A           99 NVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDA  177 (452)
T ss_dssp             CCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCS
T ss_pred             cCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCc
Confidence                       1122322       3679999999964   58999999999999999852  222 232         2


Q ss_pred             CCCCeEEEEEcCCCCEEEEEe--CCCcEEEE
Q 005656          334 HTDRITDFCFSEDGKWLLSSG--MDGSLRIW  362 (685)
Q Consensus       334 h~~~I~~l~~spdg~~l~s~s--~Dg~I~iw  362 (685)
                      ....|.+++|.+++-.|...+  ..|.|+-.
T Consensus       178 ~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          178 RVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             SCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             ccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            335789999999887666544  77877654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.55  E-value=0.13  Score=46.72  Aligned_cols=136  Identities=10%  Similarity=-0.073  Sum_probs=83.1

Q ss_pred             cCEEEEEEcCCCCEEEEEECCCeEEEEECCCCce------EEEeec-C-CceeEEEEeecCCEEEEEeCCCeEEEEEcCC
Q 005656          253 GEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDL------KSRWEV-G-CSLVKIVYHRVNGLLATVADDLVIRLFDVVA  324 (685)
Q Consensus       253 ~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~------~~~~~~-~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~  324 (685)
                      ..+..++|+|+|.+.++  .+|.++-.+..+...      ...+.. . .....+.|.|+|.+.++  .||.|+-++-.+
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            36779999998886555  678777777654211      112211 1 22578899999998888  569888777533


Q ss_pred             Cee-------EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcee------eEEe-eccc-eEEEEEcCCCC
Q 005656          325 LRM-------VRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI------DAIH-VDVS-ITALSLSPNMD  389 (685)
Q Consensus       325 ~~~-------~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i------~~~~-~~~~-v~~v~~spdg~  389 (685)
                      ...       ...-.+--..+..+.|.|+|.+.+..  |+.++-+.-+++...      ..+- .... -+-+.|+|+|.
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~  194 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT  194 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCc
Confidence            110       11111112458999999999866665  787665555533311      1111 1112 45577999998


Q ss_pred             eEEEE
Q 005656          390 VLATA  394 (685)
Q Consensus       390 ~Lat~  394 (685)
                      +.++.
T Consensus       195 l~~v~  199 (236)
T 1tl2_A          195 LFGVQ  199 (236)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            88877

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=96.51  E-value=0.18  Score=52.51  Aligned_cols=189  Identities=12%  Similarity=0.153  Sum_probs=115.2

Q ss_pred             CCCEEEEEe-cCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEc--CCCCEEEEEEC-------CCe-------
Q 005656          213 CGNFAVLGT-AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACD--STNTLMISAGY-------HGD-------  275 (685)
Q Consensus       213 ~g~~l~~g~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~~~l~s~s~-------dg~-------  275 (685)
                      ||+++++-. .+.+|...++..-+....+.-       .....+.++.+-  |+..+++.++.       ||.       
T Consensus       141 DGrylfiNdkan~RvAri~l~~~~~d~Ii~i-------Pn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~  213 (638)
T 3sbq_A          141 DGKYLFINDKANSRVARIRLDIMKCDKMITV-------PNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDE  213 (638)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEEC-------TTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTST
T ss_pred             eeEEEEEecCCCcceEEEECCcEeeceeEeC-------CCCcCcccccccccCCccEEEecceeeccCCCCCcccccCCh
Confidence            778888876 467888888887665444321       455667777765  56666666553       222       


Q ss_pred             -----EEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCC---------------eEEEEEcCC-------Ce--
Q 005656          276 -----IKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDL---------------VIRLFDVVA-------LR--  326 (685)
Q Consensus       276 -----i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---------------~I~i~d~~~-------~~--  326 (685)
                           ....|..+.+...++..++....+...+++++.++.+.+.               .+.++++..       |+  
T Consensus       214 ~~y~~f~~iD~~tm~v~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~  293 (638)
T 3sbq_A          214 NSYTMYNAIDAETMEMAFQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFI  293 (638)
T ss_dssp             TEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCB
T ss_pred             hhceEEEEEcCCccEEEEEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeE
Confidence                 1123344445545544455566666777888777665432               355555421       10  


Q ss_pred             -----eEEEEecCC---------------CCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCC------ce-------eeE
Q 005656          327 -----MVRKFEGHT---------------DRITDFCFSEDGKWLLSSG-MDGSLRIWDVILA------RQ-------IDA  372 (685)
Q Consensus       327 -----~~~~~~~h~---------------~~I~~l~~spdg~~l~s~s-~Dg~I~iwd~~~~------~~-------i~~  372 (685)
                           -+..+.+..               .....+.++|||++++.++ .+.++.|+|+..-      +.       +..
T Consensus       294 ~~~g~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae  373 (638)
T 3sbq_A          294 TLGDSKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGE  373 (638)
T ss_dssp             CCTTCCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEEC
T ss_pred             EECCCCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEee
Confidence                 122232211               2345688999999998776 6789999998742      11       334


Q ss_pred             EeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEcCCC
Q 005656          373 IHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCM  409 (685)
Q Consensus       373 ~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~~  409 (685)
                      ..........+|.++|....+-..|. .|.-|+....
T Consensus       374 ~e~GlGPlHt~Fd~~G~aYTtlfidS-qvvkWni~~a  409 (638)
T 3sbq_A          374 PELGLGPLHTTFDGRGNAYTTLFIDS-QVVKWNMEEA  409 (638)
T ss_dssp             CBCCSCEEEEEECSSSEEEEEETTTT-EEEEEEHHHH
T ss_pred             ccCCCcccEEEECCCCceEeeeeecc-eEEEEeccHH
Confidence            44555689999999994333444665 9999986543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.46  E-value=0.15  Score=50.02  Aligned_cols=146  Identities=12%  Similarity=0.064  Sum_probs=77.7

Q ss_pred             CCCEEEEEecC-----CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC-----CeEEEEECC
Q 005656          213 CGNFAVLGTAG-----GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH-----GDIKVWDFK  282 (685)
Q Consensus       213 ~g~~l~~g~~d-----g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d-----g~i~iwd~~  282 (685)
                      +++.+++|+.+     ..+.+||+.+......-.. +     .....-..+.+  +++.++.|+.+     ..+.+||+.
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-p-----~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~  192 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPM-L-----TRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPE  192 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTEEEECCCC-S-----SCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETT
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCC-C-----ccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCC
Confidence            56666666543     4688999987764432110 0     11111122222  56677777654     458899988


Q ss_pred             CCceEEEeecC--CceeEEEEeecCCEEEEEeCC-----CeEEEEEcCCCeeEEE--EecCCCCeEEEEEcCCCCEEEEE
Q 005656          283 GRDLKSRWEVG--CSLVKIVYHRVNGLLATVADD-----LVIRLFDVVALRMVRK--FEGHTDRITDFCFSEDGKWLLSS  353 (685)
Q Consensus       283 ~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d-----g~I~i~d~~~~~~~~~--~~~h~~~I~~l~~spdg~~l~s~  353 (685)
                      +.+-...-..+  ..-.+++. -++.+++.|+.+     ..+.+||+.+.+-...  +.........+.+  ++++++.|
T Consensus       193 ~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~G  269 (308)
T 1zgk_A          193 RNEWRMITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGRIYVLG  269 (308)
T ss_dssp             TTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEC
T ss_pred             CCeEeeCCCCCCccccceEEE-ECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCEEEEEc
Confidence            76544322221  11122222 266777777654     4689999987653321  1111111122222  67777777


Q ss_pred             eCC-----CcEEEEEcCCCce
Q 005656          354 GMD-----GSLRIWDVILARQ  369 (685)
Q Consensus       354 s~D-----g~I~iwd~~~~~~  369 (685)
                      +.+     ..+.+||+.+.+-
T Consensus       270 G~~~~~~~~~v~~yd~~~~~W  290 (308)
T 1zgk_A          270 GYDGHTFLDSVECYDPDTDTW  290 (308)
T ss_dssp             CBCSSCBCCEEEEEETTTTEE
T ss_pred             CcCCCcccceEEEEcCCCCEE
Confidence            754     3477888776543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.45  E-value=0.18  Score=49.67  Aligned_cols=205  Identities=8%  Similarity=0.041  Sum_probs=103.9

Q ss_pred             ceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec-----C------CcEEEEECCCCcccccccccccc
Q 005656          178 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA-----G------GWIERFNLQSGISRGSYLDMSER  246 (685)
Q Consensus       178 ~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-----d------g~i~~~d~~~~~~~~~~~~~~~~  246 (685)
                      ..+..+|........   ...+.........+...++..+++|+.     .      ..+.+||..++.....-. .+. 
T Consensus        13 ~~~~~yd~~~~~W~~---~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~-~p~-   87 (315)
T 4asc_A           13 EGAVAYDPAANECYC---ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP-LPS-   87 (315)
T ss_dssp             TEEEEEETTTTEEEE---EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC-BSS-
T ss_pred             CceEEECCCCCeEec---CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC-CCc-
Confidence            567777776654332   111111123334444567788888873     1      137889998876533211 110 


Q ss_pred             ccCCCCcCEEEEEEcCCCCEEEEEECC--------CeEEEEECCCCceEEEeecCC-ceeEEEEeecCCEEEEEeC-C--
Q 005656          247 SNYAHNGEVVGVACDSTNTLMISAGYH--------GDIKVWDFKGRDLKSRWEVGC-SLVKIVYHRVNGLLATVAD-D--  314 (685)
Q Consensus       247 ~~~~h~~~v~~l~~~~~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~-d--  314 (685)
                      ....|    ..+.+  ++..++.|+.+        ..+.+||..+.+-...-..+. .....+...++++++.|+. +  
T Consensus        88 ~r~~~----~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~  161 (315)
T 4asc_A           88 PRCLF----GLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDR  161 (315)
T ss_dssp             CEESC----EEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTS
T ss_pred             chhce----eEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCC
Confidence            00111    12222  55666666632        358899998775433222221 1111222345677777765 2  


Q ss_pred             ---CeEEEEEcCCCeeEEE--EecCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCCceeeEEeeccc---eEE
Q 005656          315 ---LVIRLFDVVALRMVRK--FEGHTDRITDFCFSEDGKWLLSSGMDG-----SLRIWDVILARQIDAIHVDVS---ITA  381 (685)
Q Consensus       315 ---g~I~i~d~~~~~~~~~--~~~h~~~I~~l~~spdg~~l~s~s~Dg-----~I~iwd~~~~~~i~~~~~~~~---v~~  381 (685)
                         ..+.+||..+.+-...  +......-..+.+  ++++++.|+.++     .+.+||..+.+-...-..+.+   ...
T Consensus       162 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~  239 (315)
T 4asc_A          162 KCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSL  239 (315)
T ss_dssp             CBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred             cccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeE
Confidence               4689999987643221  1111111122223  677778887654     488899887643332222211   222


Q ss_pred             EEEcCCCCeEEEEEeC
Q 005656          382 LSLSPNMDVLATAHVD  397 (685)
Q Consensus       382 v~~spdg~~Lat~~~d  397 (685)
                      +.+  ++++++.|+.+
T Consensus       240 ~~~--~~~l~v~GG~~  253 (315)
T 4asc_A          240 VSL--VGTLYAIGGFA  253 (315)
T ss_dssp             EEE--TTEEEEEEEEE
T ss_pred             EEE--CCEEEEECCcc
Confidence            333  66777777654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.40  E-value=0.072  Score=48.47  Aligned_cols=147  Identities=14%  Similarity=-0.001  Sum_probs=85.3

Q ss_pred             CeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005656          204 AVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG  283 (685)
Q Consensus       204 ~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~  283 (685)
                      .+..++|+|+|...++  .+|.++..+..++....-+......-..+-.. -..+.|+|+|.+.++  .||.|+-++-.+
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            5679999999986666  88888888876543322221000000001111 468899999987776  569998887643


Q ss_pred             CceE------EEe-ecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCe------eEEEEe-cCCCCeEEEEEcCCCC
Q 005656          284 RDLK------SRW-EVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALR------MVRKFE-GHTDRITDFCFSEDGK  348 (685)
Q Consensus       284 ~~~~------~~~-~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~------~~~~~~-~h~~~I~~l~~spdg~  348 (685)
                      ....      ..+ ... ..+..+.+.|+|.+.++.  |+.++-....+..      ....+- +.-..-.-+.|+++|.
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~  194 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT  194 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCc
Confidence            2111      111 111 467899999999988887  7775433322111      011111 2222344567899887


Q ss_pred             EEEEEeCCCcE
Q 005656          349 WLLSSGMDGSL  359 (685)
Q Consensus       349 ~l~s~s~Dg~I  359 (685)
                      +.+..  +|.+
T Consensus       195 l~~v~--~g~~  203 (236)
T 1tl2_A          195 LFGVQ--GGKF  203 (236)
T ss_dssp             EEEEE--TTEE
T ss_pred             EEEEe--CCeE
Confidence            66655  6633

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.40  E-value=0.37  Score=50.15  Aligned_cols=144  Identities=12%  Similarity=0.127  Sum_probs=84.4

Q ss_pred             CEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEee---------cCCceeEEEEeec---CCEEEEEeC--------
Q 005656          254 EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE---------VGCSLVKIVYHRV---NGLLATVAD--------  313 (685)
Q Consensus       254 ~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---------~~~~i~~~~~~~~---~~~l~~~~~--------  313 (685)
                      ..++++|.|+|+++++-...+.|++++..++.......         .......++++|+   +..|+++..        
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~  107 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD  107 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence            46799999999876665444579888866554332221         1245678999996   555554442        


Q ss_pred             -----CCeEEEEEcCCC-------eeEE-EEec-CCCCeEEEEEcCCCCEEEEEeCCC----------------------
Q 005656          314 -----DLVIRLFDVVAL-------RMVR-KFEG-HTDRITDFCFSEDGKWLLSSGMDG----------------------  357 (685)
Q Consensus       314 -----dg~I~i~d~~~~-------~~~~-~~~~-h~~~I~~l~~spdg~~l~s~s~Dg----------------------  357 (685)
                           ...|.-|+....       +.+. .+.. .......|+|.|||.+.++.+..+                      
T Consensus       108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~~~  187 (454)
T 1cru_A          108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQEL  187 (454)
T ss_dssp             CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCCHHHH
T ss_pred             cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCCCCCccccccccccccccccccc
Confidence                 235666665421       1121 1221 123478999999998777655321                      


Q ss_pred             --------cEEEEEcC-CCc-----------eeeEEe-eccceEEEEEcCCCCeEEEEEeC
Q 005656          358 --------SLRIWDVI-LAR-----------QIDAIH-VDVSITALSLSPNMDVLATAHVD  397 (685)
Q Consensus       358 --------~I~iwd~~-~~~-----------~i~~~~-~~~~v~~v~~spdg~~Lat~~~d  397 (685)
                              .=+||.+. .|.           ....+. .+..+..++|+|+|.+.++-+..
T Consensus       188 ~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp~G~L~~~d~g~  248 (454)
T 1cru_A          188 NGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGKLLQSEQGP  248 (454)
T ss_dssp             HTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSCEEEEEECS
T ss_pred             cccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEECCCCCEEEEecCC
Confidence                    11344443 233           223333 34458999999988766665543

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.28  E-value=0.92  Score=44.13  Aligned_cols=125  Identities=8%  Similarity=0.059  Sum_probs=70.7

Q ss_pred             EEccCCCEEEEEec-CCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC--CeEEEEECCCCc
Q 005656          209 TISACGNFAVLGTA-GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH--GDIKVWDFKGRD  285 (685)
Q Consensus       209 ~~s~~g~~l~~g~~-dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d--g~i~iwd~~~~~  285 (685)
                      +++++|+.|+..+. ...|++.++..+.....+         .  +... ..+.|++.+|+-...+  ..|..-++....
T Consensus       151 ~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~---------~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~  218 (302)
T 3s25_A          151 TCNTSDRYFYYNNPKNGQLYRYDTASQSEALFY---------D--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN  218 (302)
T ss_dssp             CSEEETTEEEEECTTTCCEEEEETTTTEEEEEE---------C--SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred             EeeEECCEEEEEeCCCceEEEEECCCCCEEEEe---------C--CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC
Confidence            35677888776655 568888888766543222         1  1111 2355888888877644  356666666554


Q ss_pred             eEEEeecCCceeEEEEeecCCEEEEEeC--CCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 005656          286 LKSRWEVGCSLVKIVYHRVNGLLATVAD--DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG  354 (685)
Q Consensus       286 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s  354 (685)
                      ... +. ...+  ..++|++++|+-+..  .+.|...++......+...+   .+.  .+++.+.+|+-..
T Consensus       219 ~~~-Lt-~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~---~~~--~i~i~~d~Iy~td  280 (302)
T 3s25_A          219 PVV-LT-EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTGFKELAKG---EFC--NINVTSQYVYFTD  280 (302)
T ss_dssp             CEE-CS-CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSCCCEEEEES---CEE--EEEECSSEEEEEE
T ss_pred             eEE-Ee-CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCCccEEeeCC---ccc--eEEEeCCEEEEEE
Confidence            332 22 2233  348888998876533  45777777765433332222   233  3444566666544

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.09  E-value=0.29  Score=56.98  Aligned_cols=204  Identities=17%  Similarity=0.235  Sum_probs=116.1

Q ss_pred             EccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecc
Q 005656           10 FSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS   89 (685)
Q Consensus        10 fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~   89 (685)
                      .+|..+ ++|.-. ..++.|+|+++...+....  ...+|.-=.|-.+..+-+.+  +..|.-|++....   .+.+.+.
T Consensus        73 MnP~~~-iiALra-g~~lQiFnl~~k~klks~~--~~e~VvfWkWis~~~l~lVT--~~aVyHW~~~~~s---~P~k~fd  143 (1630)
T 1xi4_A           73 MNPASK-VIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISLNTVALVT--DNAVYHWSMEGES---QPVKMFD  143 (1630)
T ss_pred             cCCCcc-eEEEec-CCeEEEeehHHhhhhcccc--cCCCceEEEecCCCeeEEEc--CCeEEEeccCCCC---ccHHHHh
Confidence            466666 777654 6889999999888777665  45567777776555432222  4579999996532   2223333


Q ss_pred             cC----CCCCeEEEEecCCCEEEEEe-------CCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeee
Q 005656           90 GH----SAPPLCIRFYANGRHILSAG-------QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD  158 (685)
Q Consensus        90 ~h----~~~v~~i~~~~~~~~l~s~s-------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (685)
                      .|    ...|..-..+++.++++..|       -.|.+.+|+++.+...  .-.++..... .+...... ....+.+|+
T Consensus       144 R~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ--~iegha~~F~-~~~~~~~~-~~~~l~~f~  219 (1630)
T 1xi4_A          144 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ--PIEGHAASFA-QFKMEGNA-EESTLFCFA  219 (1630)
T ss_pred             cchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccch--hhhHhHhhhh-eeccCCCC-CCceEEEEE
Confidence            33    45666677788888877544       3478888887654321  1111111110 11111000 001122222


Q ss_pred             cccccccCCcceEEEEcCCceEEEEEcCcc-----ccCc---eeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEE
Q 005656          159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNF-----VLGE---HILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFN  230 (685)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~-----~~~~---~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d  230 (685)
                      ...             ...+.+++-.+...     ...+   .+..+.........++.+++.-..+++-+.-|.+++||
T Consensus       220 ~~~-------------~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d  286 (1630)
T 1xi4_A          220 VRG-------------QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYD  286 (1630)
T ss_pred             Eec-------------CCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEe
Confidence            111             11256666666433     1111   11112222345567888999999999999999999999


Q ss_pred             CCCCccccc
Q 005656          231 LQSGISRGS  239 (685)
Q Consensus       231 ~~~~~~~~~  239 (685)
                      +.+|..+..
T Consensus       287 ~~t~~~i~~  295 (1630)
T 1xi4_A          287 LETGTCIYM  295 (1630)
T ss_pred             cccchhhhh
Confidence            999987654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.08  E-value=0.48  Score=55.22  Aligned_cols=231  Identities=10%  Similarity=0.088  Sum_probs=127.2

Q ss_pred             CCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecC
Q 005656           24 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN  103 (685)
Q Consensus        24 dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~  103 (685)
                      ..+|.|.|+.++..+.+-.    -.--+.-.+|..+.+|--. ..++.|+|+++..    .++.. ....+|..-.|-.+
T Consensus        47 ~~~vvIidl~~~~~~~rrp----i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~----klks~-~~~e~VvfWkWis~  116 (1630)
T 1xi4_A           47 QAQVVIIDMNDPSNPIRRP----ISADSAIMNPASKVIALKA-GKTLQIFNIEMKS----KMKAH-TMTDDVTFWKWISL  116 (1630)
T ss_pred             CceEEEEECCCCCCccccc----ccchhhccCCCcceEEEec-CCeEEEeehHHhh----hhccc-ccCCCceEEEecCC
Confidence            3478888988866442221    1122445678888777664 6799999998863    33322 23456777777654


Q ss_pred             CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEE
Q 005656          104 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW  183 (685)
Q Consensus       104 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  183 (685)
                      . .|+..+ +..|.-|++........+-..+                                                 
T Consensus       117 ~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~-------------------------------------------------  145 (1630)
T 1xi4_A          117 N-TVALVT-DNAVYHWSMEGESQPVKMFDRH-------------------------------------------------  145 (1630)
T ss_pred             C-eeEEEc-CCeEEEeccCCCCccHHHHhcc-------------------------------------------------
Confidence            3 333333 4579999986422111110000                                                 


Q ss_pred             EcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEE-------ecCCcEEEEECCCCccccccccccccccCCCCcCEE
Q 005656          184 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-------TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVV  256 (685)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-------~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~  256 (685)
                                    ..-....|..-..+++.++++..       .-.|.+.+|....+.....         .+|.+...
T Consensus       146 --------------~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~i---------egha~~F~  202 (1630)
T 1xi4_A          146 --------------SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPI---------EGHAASFA  202 (1630)
T ss_pred             --------------hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhh---------hHhHhhhh
Confidence                          00112445555666666665542       2357889998876544321         14444333


Q ss_pred             EEEEcCC---CCEEEEEE---CCCeEEEEECCCC---ce-E-----EE-eec---CCceeEEEEeecCCEEEEEeCCCeE
Q 005656          257 GVACDST---NTLMISAG---YHGDIKVWDFKGR---DL-K-----SR-WEV---GCSLVKIVYHRVNGLLATVADDLVI  317 (685)
Q Consensus       257 ~l~~~~~---~~~l~s~s---~dg~i~iwd~~~~---~~-~-----~~-~~~---~~~i~~~~~~~~~~~l~~~~~dg~I  317 (685)
                      .+.....   ...++.+.   ..+.++|-++...   .. .     .. +..   ..-..++..++.-..+..-+.-|.|
T Consensus       203 ~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~  282 (1630)
T 1xi4_A          203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYI  282 (1630)
T ss_pred             eeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceE
Confidence            3332211   11222221   1267888887532   11 1     00 111   1334567778878888899999999


Q ss_pred             EEEEcCCCeeEEEEecCCCCe
Q 005656          318 RLFDVVALRMVRKFEGHTDRI  338 (685)
Q Consensus       318 ~i~d~~~~~~~~~~~~h~~~I  338 (685)
                      ++||+.|+.++..-+-....|
T Consensus       283 ~~~d~~t~~~i~~~ris~~~i  303 (1630)
T 1xi4_A          283 HLYDLETGTCIYMNRISGETI  303 (1630)
T ss_pred             EEEecccchhhhhccccCCce
Confidence            999999998876544333333

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.88  E-value=0.52  Score=46.32  Aligned_cols=178  Identities=10%  Similarity=0.026  Sum_probs=90.1

Q ss_pred             eEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec----CC-------cEEEEECCCCccccccccccccc
Q 005656          179 QAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA----GG-------WIERFNLQSGISRGSYLDMSERS  247 (685)
Q Consensus       179 ~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~----dg-------~i~~~d~~~~~~~~~~~~~~~~~  247 (685)
                      .+..++........... +  .........+...++..+++|+.    ++       .+.+||..++.....-. .+.  
T Consensus        25 ~~~~yd~~~~~W~~~~~-~--~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~-~p~--   98 (318)
T 2woz_A           25 AAVAYDPMENECYLTAL-A--EQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP-LPS--   98 (318)
T ss_dssp             EEEEEETTTTEEEEEEE-C--TTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC-BSS--
T ss_pred             ceEEECCCCCceecccC-C--ccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC-CCc--
Confidence            46677766554332111 1  11122233445567788888873    12       27889988776543211 000  


Q ss_pred             cCCCCcCEEEEEEcCCCCEEEEEECC-------CeEEEEECCCCceEEEeecCCc-eeEEEEeecCCEEEEEeC------
Q 005656          248 NYAHNGEVVGVACDSTNTLMISAGYH-------GDIKVWDFKGRDLKSRWEVGCS-LVKIVYHRVNGLLATVAD------  313 (685)
Q Consensus       248 ~~~h~~~v~~l~~~~~~~~l~s~s~d-------g~i~iwd~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~------  313 (685)
                        .. .....+.+  +++.++.|+.+       ..+.+||..+.+-...-..+.+ ....+...++.+++.|+.      
T Consensus        99 --~r-~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~  173 (318)
T 2woz_A           99 --AR-CLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKC  173 (318)
T ss_dssp             --CB-CSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCB
T ss_pred             --cc-cccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCc
Confidence              11 11112222  56677777754       3588889887654433222211 111122246677777764      


Q ss_pred             CCeEEEEEcCCCeeEEE--EecCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCce
Q 005656          314 DLVIRLFDVVALRMVRK--FEGHTDRITDFCFSEDGKWLLSSGMD-----GSLRIWDVILARQ  369 (685)
Q Consensus       314 dg~I~i~d~~~~~~~~~--~~~h~~~I~~l~~spdg~~l~s~s~D-----g~I~iwd~~~~~~  369 (685)
                      -..+.+||+.+.+-...  +.........+.+  ++++++.|+.+     ..+.+||+.+.+-
T Consensus       174 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W  234 (318)
T 2woz_A          174 TNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKW  234 (318)
T ss_dssp             CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCE
T ss_pred             cceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeE
Confidence            23589999988653322  1111111122223  67777777643     3477888877643

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.84  E-value=0.19  Score=50.42  Aligned_cols=178  Identities=11%  Similarity=0.024  Sum_probs=86.9

Q ss_pred             CCCEEEEEec-C---------CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC---------
Q 005656          213 CGNFAVLGTA-G---------GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH---------  273 (685)
Q Consensus       213 ~g~~l~~g~~-d---------g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d---------  273 (685)
                      ++..+++|+. +         ..+.+||+.+......-...     ........++.  .+++.++.|+.+         
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-----p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~  137 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHA-----PMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFE  137 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCC-----SSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCC-----CcccccceEEE--ECCEEEEEeCcCCCcCccccc
Confidence            5677777765 2         46899999887654322110     01111112222  456777778754         


Q ss_pred             ------------------------------CeEEEEECCCCceEEEeecC--Cce-eEEEEeecCCEEEEEeC------C
Q 005656          274 ------------------------------GDIKVWDFKGRDLKSRWEVG--CSL-VKIVYHRVNGLLATVAD------D  314 (685)
Q Consensus       274 ------------------------------g~i~iwd~~~~~~~~~~~~~--~~i-~~~~~~~~~~~l~~~~~------d  314 (685)
                                                    ..+.+||..+.+-...-...  ... .+++. -++++++.|+.      .
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~  216 (357)
T 2uvk_A          138 DLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRT  216 (357)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEEC
T ss_pred             chhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCccc
Confidence                                          47899999877544432222  112 22232 35666677653      2


Q ss_pred             CeEEEEEc--CCCeeE--EEEecCCCCeEEEEEcCCCCEEEEEeCC----------------------CcEEEEEcCCCc
Q 005656          315 LVIRLFDV--VALRMV--RKFEGHTDRITDFCFSEDGKWLLSSGMD----------------------GSLRIWDVILAR  368 (685)
Q Consensus       315 g~I~i~d~--~~~~~~--~~~~~h~~~I~~l~~spdg~~l~s~s~D----------------------g~I~iwd~~~~~  368 (685)
                      ..+.+||+  .+.+-.  ..+..........+...++++++.|+.+                      ..+.+||+.+.+
T Consensus       217 ~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~  296 (357)
T 2uvk_A          217 DAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGK  296 (357)
T ss_dssp             CCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---
T ss_pred             CceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCc
Confidence            45777877  433221  1111111111111223367777777632                      257889988664


Q ss_pred             eeeEEeeccc-eEEEEEcCCCCeEEEEEeCC
Q 005656          369 QIDAIHVDVS-ITALSLSPNMDVLATAHVDQ  398 (685)
Q Consensus       369 ~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~  398 (685)
                      -...-..+.+ ....+...++++++.|+.++
T Consensus       297 W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~  327 (357)
T 2uvk_A          297 WDKSGELSQGRAYGVSLPWNNSLLIIGGETA  327 (357)
T ss_dssp             CEEEEECSSCCBSSEEEEETTEEEEEEEECG
T ss_pred             eeeCCCCCCCcccceeEEeCCEEEEEeeeCC
Confidence            3332222222 11112223677777777654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.57  E-value=0.92  Score=50.11  Aligned_cols=176  Identities=13%  Similarity=0.093  Sum_probs=93.1

Q ss_pred             CCCEEEEEecC------CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCC--eEEEEECCCC
Q 005656          213 CGNFAVLGTAG------GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG--DIKVWDFKGR  284 (685)
Q Consensus       213 ~g~~l~~g~~d------g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg--~i~iwd~~~~  284 (685)
                      ++..+++|+.+      ..+.+||+.+......-. .+ .....|     +++...++..++.||.++  .+.+||..+.
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~-~p-~~R~~h-----~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~  523 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKS-LS-HTRFRH-----SACSLPDGNVLILGGVTEGPAMLLYNVTEE  523 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCC-CS-BCCBSC-----EEEECTTSCEEEECCBCSSCSEEEEETTTT
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCC-CC-CCcccc-----eEEEEcCCEEEEECCCCCCCCEEEEECCCC
Confidence            67777777654      358899998865443211 00 011122     222323778888887654  6999999887


Q ss_pred             ceEEEee---c--C-CceeEEEEeec-CCEEEEEeC--C-----CeEEEEEcCCCee-----EEEEecC--CCCe-EEEE
Q 005656          285 DLKSRWE---V--G-CSLVKIVYHRV-NGLLATVAD--D-----LVIRLFDVVALRM-----VRKFEGH--TDRI-TDFC  342 (685)
Q Consensus       285 ~~~~~~~---~--~-~~i~~~~~~~~-~~~l~~~~~--d-----g~I~i~d~~~~~~-----~~~~~~h--~~~I-~~l~  342 (685)
                      .-...-.   .  . .....+.+..+ +.+++.|+.  +     ..+.+||+.+.+-     ...+...  .... .+++
T Consensus       524 ~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~  603 (695)
T 2zwa_A          524 IFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIK  603 (695)
T ss_dssp             EEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEE
T ss_pred             ceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEE
Confidence            6443321   1  1 22233555555 567777765  2     4689999987761     1222111  1111 1223


Q ss_pred             EcCCCCEEEEEeC--------CCcEEEEEcCCCceeeEEeeccce----------EEEEEcCCCCeEEEEEe
Q 005656          343 FSEDGKWLLSSGM--------DGSLRIWDVILARQIDAIHVDVSI----------TALSLSPNMDVLATAHV  396 (685)
Q Consensus       343 ~spdg~~l~s~s~--------Dg~I~iwd~~~~~~i~~~~~~~~v----------~~v~~spdg~~Lat~~~  396 (685)
                      ...++++++.|+.        ...|.+||..+.+-. ........          .+.+..++|++++.|+.
T Consensus       604 ~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~-~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg  674 (695)
T 2zwa_A          604 YITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT-SIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGG  674 (695)
T ss_dssp             EEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE-ECCCCHHHHHHSCCCCSSCEEECC---CEEEECCE
T ss_pred             EeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE-EeeccccccCCCCccceeeeEEEeCCCEEEEEeCC
Confidence            3333777777774        345999999877543 22211111          23444456677777653

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.06  E-value=0.75  Score=50.86  Aligned_cols=109  Identities=11%  Similarity=0.148  Sum_probs=56.6

Q ss_pred             cCCCCEEEEEeCC----CcEEEEeCCCCeeeEEe-e-----cccccCeeEEEEeC-CCcEEEEecCCC------cEEEEE
Q 005656           12 SDGQPLLASGASS----GVISIWNLEKRRLQSVI-R-----EAHDNAIISLHFFA-NEPVLMSASADN------SIKMWI   74 (685)
Q Consensus        12 pdg~~~latg~~d----g~I~vwd~~~~~~~~~~-~-----~~h~~~V~~l~~sp-~~~~l~s~s~D~------~v~iWd   74 (685)
                      .++. +++.|+.+    ..+.+||..+++-...- .     ......-.+++..+ ++.+++.||.++      .+.+||
T Consensus       396 ~~~~-iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd  474 (695)
T 2zwa_A          396 AGND-VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFD  474 (695)
T ss_dssp             CSSC-EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEE
T ss_pred             ECCE-EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEe
Confidence            3455 77777743    46889998877543332 1     01111123344444 777888887543      455665


Q ss_pred             ecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCC--ceEEEEeecC
Q 005656           75 FDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR--AFRLFSVIQD  124 (685)
Q Consensus        75 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg--~i~vwd~~~~  124 (685)
                      ..+.  .+..+........ -.+++...+++.++.||.++  .+.+||+.++
T Consensus       475 ~~t~--~W~~~~~~p~~R~-~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~  523 (695)
T 2zwa_A          475 MKTR--EWSMIKSLSHTRF-RHSACSLPDGNVLILGGVTEGPAMLLYNVTEE  523 (695)
T ss_dssp             TTTT--EEEECCCCSBCCB-SCEEEECTTSCEEEECCBCSSCSEEEEETTTT
T ss_pred             CCCC--cEEECCCCCCCcc-cceEEEEcCCEEEEECCCCCCCCEEEEECCCC
Confidence            5443  2222222111111 12233324777888887654  5777776554

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=94.61  E-value=4.9  Score=41.60  Aligned_cols=109  Identities=16%  Similarity=0.165  Sum_probs=59.7

Q ss_pred             EEEEEEccCCC-CEEEEEeCCCcEEEEeCCCCe---eeEEee----c----ccccCeeEEEEeCC----CcEEEEecC--
Q 005656            5 VTALAFSSDGQ-PLLASGASSGVISIWNLEKRR---LQSVIR----E----AHDNAIISLHFFAN----EPVLMSASA--   66 (685)
Q Consensus         5 V~~l~fspdg~-~~latg~~dg~I~vwd~~~~~---~~~~~~----~----~h~~~V~~l~~sp~----~~~l~s~s~--   66 (685)
                      -+.|+|.|||. .+++ +...|.|++++.....   .+..+.    .    +.......|+|+|+    +.+.++-+.  
T Consensus        16 P~~~a~~pdG~~rl~V-~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~   94 (463)
T 2wg3_C           16 PVGALHSGDGSQRLFI-LEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ   94 (463)
T ss_dssp             EEEEECCSSSSCCEEE-EETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred             ceEEEECCCCCeEEEE-EeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence            36899999984 2554 4678999999754321   122211    0    11457889999996    443333221  


Q ss_pred             C----------CcEEEEEecCCCC------CCceeEecc--cCCCCCeEEEEecCCCEEEEEeCCC
Q 005656           67 D----------NSIKMWIFDTTDG------DPRLLRFRS--GHSAPPLCIRFYANGRHILSAGQDR  114 (685)
Q Consensus        67 D----------~~v~iWd~~~~~~------~~~~~~~~~--~h~~~v~~i~~~~~~~~l~s~s~dg  114 (685)
                      +          ..|.-|.+.....      ..+.+....  ........|.|.|||.+.++.+..+
T Consensus        95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~  160 (463)
T 2wg3_C           95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM  160 (463)
T ss_dssp             CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred             CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence            1          1344455543211      112222211  1223357899999998777766544

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=94.23  E-value=4  Score=39.06  Aligned_cols=160  Identities=11%  Similarity=0.051  Sum_probs=79.3

Q ss_pred             CeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005656          204 AVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG  283 (685)
Q Consensus       204 ~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~  283 (685)
                      .|..++...  .+.++-+ +|.|+.|-....-......        .....|..++...... ++ -. ||.|+.|-...
T Consensus       103 ~v~~ia~G~--~hs~al~-~G~v~~wG~n~~gqlg~~~--------~~~~~i~~i~~G~~~~-~~-l~-~G~v~~wG~n~  168 (282)
T 3qhy_B          103 GVDAIAAGA--WASYALK-DGKVIAWGDDSDGQTTVPA--------EAQSGVTALDGGVYTA-LA-VK-NGGVIAWGDNY  168 (282)
T ss_dssp             SEEEEEEET--TEEEEEE-TTEEEEEECCTTSTTSCCG--------GGGSSEEEEEECSSEE-EE-EE-TTEEEEEECCT
T ss_pred             CeEEEECcC--CEEEEEe-CCeEEEecCCCCCcCCCCc--------cCCCCeEEEEcccCEE-EE-EE-CCEEEEecCCC
Confidence            344444433  3344445 8888888665422221110        2234577777654332 22 33 79999997654


Q ss_pred             -CceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005656          284 -RDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIW  362 (685)
Q Consensus       284 -~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iw  362 (685)
                       +++-........|..++.... ..++.  .||.|+.|-....-.+..-......|..++...+...+++   ||.|+.|
T Consensus       169 ~gqlg~p~~~~~~v~~i~~G~~-hs~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al~---~g~v~~w  242 (282)
T 3qhy_B          169 FGQTTVPAEAQSGVDDVAGGIF-HSLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLALK---NGKVIAW  242 (282)
T ss_dssp             TSTTSCCGGGGSSEEEEEECSS-EEEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEEE---TTEEEEE
T ss_pred             CCCCCCceecCCCeEEEEecCC-EEEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEEE---CCEEEEe
Confidence             222111111245666655432 23333  5899999965432111100111235777776544333333   8999999


Q ss_pred             EcCCCceeeEEeeccceEEEEEcC
Q 005656          363 DVILARQIDAIHVDVSITALSLSP  386 (685)
Q Consensus       363 d~~~~~~i~~~~~~~~v~~v~~sp  386 (685)
                      -......+..   ...|.+++-..
T Consensus       243 G~n~~gq~~v---~~~v~~iaaG~  263 (282)
T 3qhy_B          243 GSSRTAPSSV---QSGVSSIEAGP  263 (282)
T ss_dssp             STTCCCCGGG---SSCEEEEEECS
T ss_pred             cCCCCccccC---CCCcEEEEECc
Confidence            7665433221   23455555444

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=92.07  E-value=12  Score=38.55  Aligned_cols=56  Identities=11%  Similarity=0.010  Sum_probs=32.6

Q ss_pred             cCeeEEEEeCCCc-EEEEecCCCcEEEEEecCCCCCCceeEecc---------cCCCCCeEEEEecC
Q 005656           47 NAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRS---------GHSAPPLCIRFYAN  103 (685)
Q Consensus        47 ~~V~~l~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~---------~h~~~v~~i~~~~~  103 (685)
                      ..-..|+|.|++. .|+.+...|.|++++.+.. .....+..+.         +.......|+|+|+
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~-~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~   79 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGE-IFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN   79 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSC-BCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCC-eeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence            3457999999996 3444456788888853321 1111111111         11356788999996

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=91.45  E-value=19  Score=39.48  Aligned_cols=98  Identities=8%  Similarity=0.032  Sum_probs=54.4

Q ss_pred             cCCcEEEEECCCCccc----cccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCe--EEEEECCCCc-eEEE-eecC
Q 005656          222 AGGWIERFNLQSGISR----GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD--IKVWDFKGRD-LKSR-WEVG  293 (685)
Q Consensus       222 ~dg~i~~~d~~~~~~~----~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~--i~iwd~~~~~-~~~~-~~~~  293 (685)
                      ..|.|...++.++..-    .....   .........+.++.+..+ ..+++...++.  +.++|+.++. .... +..+
T Consensus       318 ~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp  393 (711)
T 4hvt_A          318 KAGSLVALHFTDLLKTESDKTSLKI---LFTPTANEVFNFISTTKD-RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLP  393 (711)
T ss_dssp             CTTCEEEEEGGGGGSCGGGCTTCEE---EECCCTTEEEEEEEECSS-CEEEEEEETTEEEEEEECEETTEECCCEEECCC
T ss_pred             CCCeEEEEECCcccccccccccceE---EECCCCCCeEEEEEEECC-EEEEEEEECCEEEEEEEECCCCceEEEeccCCC
Confidence            4677888888764210    00000   001133456788888865 56677767764  6777776664 1222 3332


Q ss_pred             --CceeEEEEeecCC-EEEEEeC---CCeEEEEEcC
Q 005656          294 --CSLVKIVYHRVNG-LLATVAD---DLVIRLFDVV  323 (685)
Q Consensus       294 --~~i~~~~~~~~~~-~l~~~~~---dg~I~i~d~~  323 (685)
                        +.+......+++. ++++.+.   -+.+..+|+.
T Consensus       394 ~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~  429 (711)
T 4hvt_A          394 YQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT  429 (711)
T ss_dssp             STTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred             CCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence              4555556666665 4444332   3578888876

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=91.37  E-value=10  Score=36.09  Aligned_cols=155  Identities=13%  Similarity=0.043  Sum_probs=97.4

Q ss_pred             CCCeEEEEEccCCCEEEEEecCCcEEEEEC---CCCccccccccccccccCCCCcCEEEEEEcC-CCCEEEEEECCCeEE
Q 005656          202 PTAVKACTISACGNFAVLGTAGGWIERFNL---QSGISRGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYHGDIK  277 (685)
Q Consensus       202 ~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~---~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~dg~i~  277 (685)
                      ...+..+.......+++.-++.|.++....   ..+.... +        ......|..+.... +..+++..+.+|.++
T Consensus        23 gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-l--------l~~~e~i~~v~~~~~~~~~~v~~T~~G~iK   93 (276)
T 3no0_A           23 KAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-L--------KSREEKIVGAFIREKFGNRLLLATKKGYVK   93 (276)
T ss_dssp             CCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-C--------SSTTCCEEEEEEGGGSCSEEEEEETTSEEE
T ss_pred             CCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-c--------CCCCCEEEEEECCcCCCCEEEEEeCCCEEE
Confidence            445666555556677888888898776543   2221111 1        13455676665421 467899999999999


Q ss_pred             EEECCCCc------eEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCC---------CeeEEEEecCCCCeEEEE
Q 005656          278 VWDFKGRD------LKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA---------LRMVRKFEGHTDRITDFC  342 (685)
Q Consensus       278 iwd~~~~~------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~---------~~~~~~~~~h~~~I~~l~  342 (685)
                      ...+..-.      ....+..+..+..+........++..+..|.+..+....         |.....+. ....|..+.
T Consensus        94 r~~l~~~~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~  172 (276)
T 3no0_A           94 KIPLAEFEYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLR  172 (276)
T ss_dssp             EEEGGGTTTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEE
T ss_pred             EEEHHHhhhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEE
Confidence            98865421      122233345566666665666888899999988887643         11111222 235577666


Q ss_pred             EcCCCCEEEEEeCCCcEEEEEcCC
Q 005656          343 FSEDGKWLLSSGMDGSLRIWDVIL  366 (685)
Q Consensus       343 ~spdg~~l~s~s~Dg~I~iwd~~~  366 (685)
                      ..+++.+++..+..|.++...+..
T Consensus       173 ~~~~~~~ll~~T~~G~~kr~~~~e  196 (276)
T 3no0_A          173 IWNGEPYLLVITAKGRVKKISHEE  196 (276)
T ss_dssp             EESSCSEEEEEETTSCEEEEEGGG
T ss_pred             EeCCCCEEEEEeCCCcEEEeEHHH
Confidence            666677899999999999988753

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=90.12  E-value=13  Score=35.37  Aligned_cols=88  Identities=11%  Similarity=-0.027  Sum_probs=45.7

Q ss_pred             CCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCC-ceEEEeecCCceeEEEE
Q 005656          223 GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-DLKSRWEVGCSLVKIVY  301 (685)
Q Consensus       223 dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~i~~~~~  301 (685)
                      +|.|+.|-...........        .-...|..++...... ++.  .||.|+.|-.... ++-........|..++.
T Consensus       158 ~G~v~~wG~n~~gqlg~p~--------~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~  226 (282)
T 3qhy_B          158 NGGVIAWGDNYFGQTTVPA--------EAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIAS  226 (282)
T ss_dssp             TTEEEEEECCTTSTTSCCG--------GGGSSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEE
T ss_pred             CCEEEEecCCCCCCCCCce--------ecCCCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEc
Confidence            6888888655432221100        1234677777654433 333  4899999976532 22111111245666655


Q ss_pred             eecCCEEEEEeCCCeEEEEEcCC
Q 005656          302 HRVNGLLATVADDLVIRLFDVVA  324 (685)
Q Consensus       302 ~~~~~~l~~~~~dg~I~i~d~~~  324 (685)
                      .... .++..  ||.|+.|-...
T Consensus       227 G~~h-~~al~--~g~v~~wG~n~  246 (282)
T 3qhy_B          227 GEWY-SLALK--NGKVIAWGSSR  246 (282)
T ss_dssp             CSSC-EEEEE--TTEEEEESTTC
T ss_pred             CCCE-EEEEE--CCEEEEecCCC
Confidence            4332 33333  88888886544

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=89.92  E-value=15  Score=35.80  Aligned_cols=156  Identities=17%  Similarity=0.157  Sum_probs=96.8

Q ss_pred             CeEEEEEccCCCEEEEEecCCcEEEEEC---CCC------ccccccccccccccCCCCcCEEEEEEcC---CCCEEEEEE
Q 005656          204 AVKACTISACGNFAVLGTAGGWIERFNL---QSG------ISRGSYLDMSERSNYAHNGEVVGVACDS---TNTLMISAG  271 (685)
Q Consensus       204 ~v~~~~~s~~g~~l~~g~~dg~i~~~d~---~~~------~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~~~l~s~s  271 (685)
                      .+..+........+++-+..|.++....   ...      .+...+.      .......|.++..-+   +..+++..+
T Consensus        43 ~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l------~l~~~e~i~~~~~~~~~~~e~~~v~~T  116 (327)
T 3uc1_A           43 IVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLL------AFQPEERIAQVIQIRGYTDAPYLVLAT  116 (327)
T ss_dssp             CEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHT------TCCTTCCEEEEEEESSTTSSSEEEEEE
T ss_pred             EEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHcc------CCCCCCEEEEEEEeccCCCCCEEEEEc
Confidence            4555555556677777888887776653   322      1111111      112345566654433   467899999


Q ss_pred             CCCeEEEEECCCC-------ceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcC--CCee-------EE--EEec
Q 005656          272 YHGDIKVWDFKGR-------DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVV--ALRM-------VR--KFEG  333 (685)
Q Consensus       272 ~dg~i~iwd~~~~-------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~--~~~~-------~~--~~~~  333 (685)
                      .+|.++.-.+..-       .....+..+..+..+........++..+..|.+..+...  .-..       ++  .+. 
T Consensus       117 ~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-  195 (327)
T 3uc1_A          117 RNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-  195 (327)
T ss_dssp             TTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-
T ss_pred             CCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-
Confidence            9999999886532       111223334556666666666788888999998888776  2111       11  122 


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005656          334 HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL  366 (685)
Q Consensus       334 h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~  366 (685)
                      ....|.++...+++.+|+.++..|.++.-.+..
T Consensus       196 ~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e  228 (327)
T 3uc1_A          196 IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEE  228 (327)
T ss_dssp             TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred             CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHH
Confidence            345577777766677899999999999887653

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=87.93  E-value=32  Score=39.32  Aligned_cols=38  Identities=18%  Similarity=0.281  Sum_probs=33.6

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEe
Q 005656          337 RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH  374 (685)
Q Consensus       337 ~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~  374 (685)
                      .+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            46778888888999999999999999999999988764

>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1

Probab=86.59  E-value=25  Score=34.23  Aligned_cols=159  Identities=11%  Similarity=0.017  Sum_probs=94.8

Q ss_pred             CCCeEEEEEccCCCEEEEEecCCcEEEEECCC---C------ccccccccccccccCCCCcCEEEEEEcC---CCCEEEE
Q 005656          202 PTAVKACTISACGNFAVLGTAGGWIERFNLQS---G------ISRGSYLDMSERSNYAHNGEVVGVACDS---TNTLMIS  269 (685)
Q Consensus       202 ~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~---~------~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~~~l~s  269 (685)
                      ...+..+........++..+..|.++.+....   .      .++..+.      .......|.++..-+   ++.+++.
T Consensus        38 ~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i------~L~~~e~Iv~~~~~~~~~~~~~ll~  111 (323)
T 1wp5_A           38 TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANII------PIDRDEEIIKAIPINDFELNGYFLF  111 (323)
T ss_dssp             TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTS------CCCTTCCEEEEEEESCTTSSCEEEE
T ss_pred             CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhcc------CCCCCCEEEEEEEecccCCCceEEE
Confidence            34455555566677888889999888776532   1      1111111      112334566554333   2567899


Q ss_pred             EECCCeEEEEECCC--------CceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCe-------eEEEEe-c
Q 005656          270 AGYHGDIKVWDFKG--------RDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALR-------MVRKFE-G  333 (685)
Q Consensus       270 ~s~dg~i~iwd~~~--------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~-------~~~~~~-~  333 (685)
                      ++.+|.++...+..        +.....+.....+..+........++..+.+|.+..+....-.       -++-+. .
T Consensus       112 ~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~  191 (323)
T 1wp5_A          112 VTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLK  191 (323)
T ss_dssp             EETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCC
T ss_pred             EeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeC
Confidence            99999999988742        1111123333556565555556678888999998888775321       122221 1


Q ss_pred             CCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCC
Q 005656          334 HTDRITDFCFSEDGK-WLLSSGMDGSLRIWDVIL  366 (685)
Q Consensus       334 h~~~I~~l~~spdg~-~l~s~s~Dg~I~iwd~~~  366 (685)
                      ....|.++...+++. .|++.+..|..+..++..
T Consensus       192 ~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e  225 (323)
T 1wp5_A          192 EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE  225 (323)
T ss_dssp             TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred             CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence            234566665544455 788888899888877754

>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}

Probab=86.52  E-value=27  Score=34.66  Aligned_cols=159  Identities=13%  Similarity=0.103  Sum_probs=93.8

Q ss_pred             CCCeEEEEEccCCCEEEEEecCCcEEEEECCC---C------ccccccccccccccCCCCcCEEEEEEcC---CCCEEEE
Q 005656          202 PTAVKACTISACGNFAVLGTAGGWIERFNLQS---G------ISRGSYLDMSERSNYAHNGEVVGVACDS---TNTLMIS  269 (685)
Q Consensus       202 ~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~---~------~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~~~l~s  269 (685)
                      ...+..+........++..+..|.++.+....   .      .....+.      .......|.++..-.   .+.+++.
T Consensus        45 ~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G~~i~~ll------~L~~~e~Iv~~~~~~~~~~~~~ll~  118 (370)
T 3l6v_A           45 EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNARGRPIINWI------PLESGERVQAVLPVREYADNRYVFM  118 (370)
T ss_dssp             CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGSC------CCCTTCCEEEEEEESCCCTTCEEEE
T ss_pred             CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcccCCcCHhhcc------CCCCCCEEEEEEEeccCCCCcEEEE
Confidence            44555666666667888889999888776432   1      1111111      112345566655432   4568999


Q ss_pred             EECCCeEEEEECCCC-------ceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCee-------EEEEe-cC
Q 005656          270 AGYHGDIKVWDFKGR-------DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM-------VRKFE-GH  334 (685)
Q Consensus       270 ~s~dg~i~iwd~~~~-------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~-------~~~~~-~h  334 (685)
                      ++..|.++...+..-       .....+.....+..+........++..+.+|.+..++...-..       ++-+. ..
T Consensus       119 ~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~  198 (370)
T 3l6v_A          119 ATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAK  198 (370)
T ss_dssp             EETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT
T ss_pred             EeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCC
Confidence            999999999886421       1112233345555555555566788888889888887643211       11111 12


Q ss_pred             CCCeEEEEEcC-----------------------------------CCCEEEEEeCCCcEEEEEcCC
Q 005656          335 TDRITDFCFSE-----------------------------------DGKWLLSSGMDGSLRIWDVIL  366 (685)
Q Consensus       335 ~~~I~~l~~sp-----------------------------------dg~~l~s~s~Dg~I~iwd~~~  366 (685)
                      ...|.++...+                                   ++.++++.+..|..+...+..
T Consensus       199 ~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e  265 (370)
T 3l6v_A          199 GEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAE  265 (370)
T ss_dssp             TCCEEEEEEECCC-----------------------------------CEEEEEETTSEEEEEEGGG
T ss_pred             CCEEEEEEEeccccccccccccccccccccccccccccccccccccCCceEEEeeCCCCEEEEEHHH
Confidence            34455554443                                   456899999999998888753

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=85.26  E-value=32  Score=34.27  Aligned_cols=136  Identities=10%  Similarity=0.044  Sum_probs=87.9

Q ss_pred             eEEEEECCCC--ceEEEeecC-------CceeEEEEe---ec----CCEEEEEe-CCCeEEEEEcCCCeeEEEEecC---
Q 005656          275 DIKVWDFKGR--DLKSRWEVG-------CSLVKIVYH---RV----NGLLATVA-DDLVIRLFDVVALRMVRKFEGH---  334 (685)
Q Consensus       275 ~i~iwd~~~~--~~~~~~~~~-------~~i~~~~~~---~~----~~~l~~~~-~dg~I~i~d~~~~~~~~~~~~h---  334 (685)
                      .|.+||+.+.  ++++.+..+       +.+..+++.   |.    +.+++++. ..+.|.|||+.+++..+.+..+   
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p  203 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA  203 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence            5778999998  888877654       457788887   22    34555554 4678999999998876655210   


Q ss_pred             ---------------CCCeEEEEEcCC----CCEEEEEeCCCcEEEEEcCCC--------ceeeEEeec---cceEEEEE
Q 005656          335 ---------------TDRITDFCFSED----GKWLLSSGMDGSLRIWDVILA--------RQIDAIHVD---VSITALSL  384 (685)
Q Consensus       335 ---------------~~~I~~l~~spd----g~~l~s~s~Dg~I~iwd~~~~--------~~i~~~~~~---~~v~~v~~  384 (685)
                                     ...|..|++||+    +++|.-....+ -++|.+++.        ..+..+...   +.-..+++
T Consensus       204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~  282 (381)
T 3q6k_A          204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY  282 (381)
T ss_dssp             CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred             ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence                           136888999998    78888777655 355655432        222223222   22445677


Q ss_pred             c-CCCCeEEEEEeCCCeEEEEEcCC-CcCC
Q 005656          385 S-PNMDVLATAHVDQNGVYLWVNRC-MFSG  412 (685)
Q Consensus       385 s-pdg~~Lat~~~d~~~I~lW~~~~-~~~~  412 (685)
                      . .+| .|..+-.+.+.|..|+... .|.+
T Consensus       283 D~~~G-~ly~~~~~~~aI~~w~~~~~~~~~  311 (381)
T 3q6k_A          283 DPKTK-VIFFAEANTKQVSCWNTQKMPLRM  311 (381)
T ss_dssp             CTTTC-EEEEEESSSSEEEEEETTSCSBCG
T ss_pred             eCCCC-eEEEEeccCCeEEEEeCCCCcccc
Confidence            6 455 4555555666999999776 6643

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=84.66  E-value=27  Score=33.01  Aligned_cols=122  Identities=12%  Similarity=0.032  Sum_probs=66.9

Q ss_pred             CCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005656          202 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF  281 (685)
Q Consensus       202 ~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~  281 (685)
                      ...+..+........++..+..|.++.++...-.....-..............|.++...+++..++..+..|.++...+
T Consensus       115 gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~  194 (276)
T 3no0_A          115 GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISH  194 (276)
T ss_dssp             TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEG
T ss_pred             CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEH
Confidence            34555555566667899999999999987643221110000000011123456777666566778888899999988876


Q ss_pred             CCC-------ceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEE--EEcC
Q 005656          282 KGR-------DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRL--FDVV  323 (685)
Q Consensus       282 ~~~-------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i--~d~~  323 (685)
                      ..-       +-...+.....+..+....+...++..+.+|.+..  ++..
T Consensus       195 ~e~~~~~R~gkGv~~i~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~  245 (276)
T 3no0_A          195 EEIPKTNRGVKGTEVSGTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK  245 (276)
T ss_dssp             GGSCCCCTTCCCEECCCSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred             HHcccCCCCCcceEEEcCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence            421       11222222334444333333345555666666665  6554

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=83.16  E-value=36  Score=33.16  Aligned_cols=151  Identities=15%  Similarity=0.094  Sum_probs=91.0

Q ss_pred             CCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECC--CC------
Q 005656          213 CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK--GR------  284 (685)
Q Consensus       213 ~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~--~~------  284 (685)
                      +..++++.+.+|.++...+..-..... ........ .....+..+........++..+..|.+..+...  .-      
T Consensus       108 ~e~~~v~~T~~G~iKr~~l~~~~~~~r-~G~~~i~l-ke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~  185 (327)
T 3uc1_A          108 DAPYLVLATRNGLVKKSKLTDFDSNRS-GGIVAVNL-RDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRA  185 (327)
T ss_dssp             SSSEEEEEETTSEEEEEEGGGGCCCCS-SCEESCBC-CTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTT
T ss_pred             CCCEEEEEcCCCEEEEeEHHHhhcccc-CceEEEEE-CCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcC
Confidence            578999999999999988754322111 00000011 224556666555556678888889998888766  21      


Q ss_pred             ---ceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCC-------eeEEEEe--cCCCCeEEEEEcCCCCEEEE
Q 005656          285 ---DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-------RMVRKFE--GHTDRITDFCFSEDGKWLLS  352 (685)
Q Consensus       285 ---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~-------~~~~~~~--~h~~~I~~l~~spdg~~l~s  352 (685)
                         ...-.+..+..|..+...+++..++..+..|.++.-.+..-       +-+..+.  .-.+.+..+....+...++.
T Consensus       186 a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l  265 (327)
T 3uc1_A          186 TSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYA  265 (327)
T ss_dssp             SBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEE
T ss_pred             CCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEE
Confidence               11112333466777777666778999999999988876432       2222222  21344555544444556666


Q ss_pred             EeCCCcEEEEEcC
Q 005656          353 SGMDGSLRIWDVI  365 (685)
Q Consensus       353 ~s~Dg~I~iwd~~  365 (685)
                      .+.+|.+.-++..
T Consensus       266 ~T~~G~~ir~~~~  278 (327)
T 3uc1_A          266 VTSGGGVIRTAAR  278 (327)
T ss_dssp             EEGGGCEEEEEGG
T ss_pred             EcCCCeEEEEehh
Confidence            7777877777654

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=82.98  E-value=70  Score=36.44  Aligned_cols=40  Identities=15%  Similarity=0.211  Sum_probs=34.5

Q ss_pred             cCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec
Q 005656          253 GEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV  292 (685)
Q Consensus       253 ~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  292 (685)
                      ..+.+++..++..++++-+.|+++|+|++.+++++.+...
T Consensus       236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL  275 (950)
T 4gq2_M          236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL  275 (950)
T ss_dssp             TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred             ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence            3577788888888999999999999999999998887654

>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}

Probab=82.08  E-value=37  Score=32.65  Aligned_cols=156  Identities=10%  Similarity=0.098  Sum_probs=94.8

Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEECCC---C------ccccccccccccccCCCCcCEEEEEEc---CCCCEEEEE
Q 005656          203 TAVKACTISACGNFAVLGTAGGWIERFNLQS---G------ISRGSYLDMSERSNYAHNGEVVGVACD---STNTLMISA  270 (685)
Q Consensus       203 ~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~---~------~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~~~l~s~  270 (685)
                      ..+..+........++..+..|.++.+....   .      .+...+.      .......|.++..-   .++.+++..
T Consensus        42 D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l------~l~~~e~i~~~~~~~~~~~~~~ll~~  115 (307)
T 1zi0_A           42 DFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLL------PLEQDERITAILPVTEFEEGVKVFMA  115 (307)
T ss_dssp             CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTS------CCCTTCCEEEEEEESCCCTTCEEEEE
T ss_pred             CEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhcc------CCCCCCEEEEEEEeccCCCCcEEEEE
Confidence            4455555555667888889999888776532   1      1111111      11334456666442   345678899


Q ss_pred             ECCCeEEEEECCC-------CceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCe-------eEE--EEecC
Q 005656          271 GYHGDIKVWDFKG-------RDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALR-------MVR--KFEGH  334 (685)
Q Consensus       271 s~dg~i~iwd~~~-------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~-------~~~--~~~~h  334 (685)
                      +..|.++...+..       +.....+..+..+..+........++..+.+|.+..++...-.       -++  .+. .
T Consensus       116 T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~  194 (307)
T 1zi0_A          116 TANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-E  194 (307)
T ss_dssp             ETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-T
T ss_pred             eCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-C
Confidence            9999999987642       1111122233556666555556678888889988888764321       111  122 2


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005656          335 TDRITDFCFSEDGKWLLSSGMDGSLRIWDVI  365 (685)
Q Consensus       335 ~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~  365 (685)
                      ...|.++...+++..|++.+..|.++-.++.
T Consensus       195 ~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~  225 (307)
T 1zi0_A          195 GDKVVSLIVPRGDGAILTATQNGYGKRTAVA  225 (307)
T ss_dssp             TCCEEEEECCCSSCEEEEEETTSEEEEECGG
T ss_pred             CCEEEEEEEecCCCEEEEEEcCCceEEEEHH
Confidence            3457776655566778888999999888774

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=80.44  E-value=43  Score=32.30  Aligned_cols=110  Identities=15%  Similarity=0.112  Sum_probs=67.5

Q ss_pred             CCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCC-------c
Q 005656          213 CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-------D  285 (685)
Q Consensus       213 ~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~-------~  285 (685)
                      ++.+++..+..|.++...+..-....... ... ......+.+.++.....+..++..+.+|.+..+....-       +
T Consensus       113 ~~~~ll~~T~~G~~kr~~l~~~~~~r~~G-~~~-i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~  190 (312)
T 1suu_A          113 DDAYLLLTTASGKIARFESTDFKAVKSRG-VIV-IKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQ  190 (312)
T ss_dssp             TTCEEEEEETTSEEEEEEGGGGCC----C-EEC-BCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBC
T ss_pred             CCCEEEEEeCCCeEEEEEHHHhhccCCCc-EEE-EecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCC
Confidence            46788999999999988774322111000 000 01123456666666555667888889999988886531       1


Q ss_pred             eEE--EeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCC
Q 005656          286 LKS--RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA  324 (685)
Q Consensus       286 ~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~  324 (685)
                      -+.  .+..+..+..+....++..+++.+..|..+..++..
T Consensus       191 Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e  231 (312)
T 1suu_A          191 GVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK  231 (312)
T ss_dssp             CEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred             CeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence            112  222345566665555667788889999998888754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	685
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-23
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-09
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-23
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	7e-13
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	9e-11
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.004
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-22
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-21
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	9e-18
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-20
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-12
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-19
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-09
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-18
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-12
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.003
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-16
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-15
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	8e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-14
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-13
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-13
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-12
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-13
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-11
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-13
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-12
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-12
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	9e-09
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-11
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-09
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-05
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	3e-07
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	2e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.001
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	3e-06
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	7e-05
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	9e-06
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	1e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	5e-05

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 98.7 bits (244), Expect = 4e-23
 Identities = 40/312 (12%), Positives = 97/312 (31%), Gaps = 29/312 (9%)

Query: 81  DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRAR 140
            P      SGH +P   + F+     ++SA +D   +++        R L     + +  
Sbjct: 6   RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDI 65

Query: 141 KLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN------------- 187
                 + L              +   C       D   + V  + N             
Sbjct: 66  SFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTI 125

Query: 188 ---FVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG------ 238
               V   + ++    +   V+    +  G      +    +  + + +   +       
Sbjct: 126 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR 185

Query: 239 ------SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV 292
                 S+   S  S+ +                ++S      IK+WD            
Sbjct: 186 HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG 245

Query: 293 GCSLVK-IVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLL 351
             + V+ +++H     + + ADD  +R++D    R ++    H   +T   F +   +++
Sbjct: 246 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVV 305

Query: 352 SSGMDGSLRIWD 363
           +  +D ++++W+
Sbjct: 306 TGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.1 bits (157), Expect = 5e-12
 Identities = 19/111 (17%), Positives = 48/111 (43%), Gaps = 5/111 (4%)

Query: 9   AFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADN 68
             S    P L SG+    I +W++        +   HDN +  + F +    ++S + D 
Sbjct: 211 KKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV-GHDNWVRGVLFHSGGKFILSCADDK 269

Query: 69  SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF 119
           ++++W  D  +   R ++  + H      + F+    ++++   D+  +++
Sbjct: 270 TLRVW--DYKNK--RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.2 bits (139), Expect = 1e-09
 Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 3   GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLM 62
             V  + F S G+  + S A    + +W+ + +R    +  AH++ + SL F    P ++
Sbjct: 248 NWVRGVLFHSGGK-FILSCADDKTLRVWDYKNKRCMKTLN-AHEHFVTSLDFHKTAPYVV 305

Query: 63  SASADNSIKMW 73
           + S D ++K+W
Sbjct: 306 TGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.7 bits (122), Expect = 1e-07
 Identities = 8/39 (20%), Positives = 16/39 (41%)

Query: 326 RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 364
                  GH   +T   F      ++S+  D ++++WD 
Sbjct: 8   PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDY 46

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.5 bits (119), Expect = 3e-07
 Identities = 27/158 (17%), Positives = 52/158 (32%), Gaps = 43/158 (27%)

Query: 250 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVY-------- 301
            H   V  V      ++M+SA     IKVWD++  D +   +     V+ +         
Sbjct: 15  GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 74

Query: 302 -----------------------------------HRVNGLLATVADDLVIRLFDVVALR 326
                                                    + + + D  I++++V    
Sbjct: 75  ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY 134

Query: 327 MVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 364
            V+ F GH + +     ++DG  + S   D ++R+W V
Sbjct: 135 CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 172

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 99.0 bits (245), Expect = 4e-23
 Identities = 37/303 (12%), Positives = 88/303 (29%), Gaps = 30/303 (9%)

Query: 83  RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKL 142
           R  R   GH A    + +  + R ++SA QD    ++      +   +  R         
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105

Query: 143 KMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCP--- 199
                 +    +         +    NV                 F+    I+       
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165

Query: 200 ----------------ENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDM 243
                            +   V + +++      V G      + ++++ G+ R ++   
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF--- 222

Query: 244 SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV---WDFKGRDLKSRWEVGCSLVKIV 300
                  H  ++  +          +       ++      +     S   + C +  + 
Sbjct: 223 -----TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277

Query: 301 YHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLR 360
           + +   LL    DD    ++D +         GH +R++    ++DG  + +   D  L+
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLK 337

Query: 361 IWD 363
           IW+
Sbjct: 338 IWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.2 bits (165), Expect = 7e-13
 Identities = 16/118 (13%), Positives = 39/118 (33%), Gaps = 4/118 (3%)

Query: 3   GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLM 62
             + A+ F  +G         +          + L +   +     I S+ F  +  +L+
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL 286

Query: 63  SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS 120
           +   D +  +W  D            +GH     C+    +G  + +   D   ++++
Sbjct: 287 AGYDDFNCNVW--DALKA--DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.7 bits (148), Expect = 9e-11
 Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 1   MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPV 60
           +   +T+++FS  G+ LL +G      ++W+  K     V+   HDN +  L    +   
Sbjct: 269 IICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKADRAGVLA-GHDNRVSCLGVTDDGMA 326

Query: 61  LMSASADNSIKMW 73
           + + S D+ +K+W
Sbjct: 327 VATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.3 bits (116), Expect = 8e-07
 Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 1/88 (1%)

Query: 325 LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV-DVSITALS 383
           +R  R   GH  +I    +  D + L+S+  DG L IWD     ++ AI +    +   +
Sbjct: 45  MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104

Query: 384 LSPNMDVLATAHVDQNGVYLWVNRCMFS 411
            +P+ + +A   +D       +     +
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGN 132

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.4 bits (85), Expect = 0.004
 Identities = 32/213 (15%), Positives = 64/213 (30%), Gaps = 15/213 (7%)

Query: 204 AVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST 263
            + A          V  +  G +  ++  +             +    +  V+  A   +
Sbjct: 57  KIYAMHWGTDSRLLVSASQDGKLIIWDSYTT--------NKVHAIPLRSSWVMTCAYAPS 108

Query: 264 NTLMISAGYHGDIKVWDFKGRDLKSRWEVGCS----LVKIVYHRVNGLLATVADDLVIRL 319
              +   G      +++ K R+   R     +     +       +  + T + D    L
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168

Query: 320 FDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI--HVDV 377
           +D+   +    F GHT  +     + D +  +S   D S ++WDV           H   
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES- 227

Query: 378 SITALSLSPNMDVLATAHVDQNGVYLWVNRCMF 410
            I A+   PN +  AT   D       +     
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQE 260

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 96.4 bits (238), Expect = 5e-22
 Identities = 45/394 (11%), Positives = 105/394 (26%), Gaps = 64/394 (16%)

Query: 7   ALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREA---HDNAIISLHFFANEPVLMS 63
            L   S   P      ++    ++N    R   V       H + +  + F  +   L +
Sbjct: 20  LLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLAT 79

Query: 64  ASADNSIKMWIFDT--------------TDGDPRLLRFRSGHSAPPLCIRFYANGRHILS 109
              + + +++                   D +                + F  +G+ + +
Sbjct: 80  GC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 138

Query: 110 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCN 169
             +DR  R++ +   +    L        +       +    K V       +R  D   
Sbjct: 139 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD----KLVSGSGDRTVRIWDLRT 194

Query: 170 VVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERF 229
                  + +  V  +                            G +   G+    +  +
Sbjct: 195 GQCSLTLSIEDGVTTVAVS----------------------PGDGKYIAAGSLDRAVRVW 232

Query: 230 NLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSR 289
           + ++G      LD    S   H   V  V        ++S      +K+W+ +  + KS 
Sbjct: 233 DSETGFLVER-LDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSD 291

Query: 290 WEVGCSLVKIVYHRVNG-------------LLATVADDLVIRLFDVVALRMVRKFEGHTD 336
            +   S    V +  +               + + + D  +  +D  +   +   +GH +
Sbjct: 292 SKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN 351

Query: 337 RITDFC------FSEDGKWLLSSGMDGSLRIWDV 364
            +             +     +   D   RIW  
Sbjct: 352 SVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.3 bits (139), Expect = 1e-09
 Identities = 40/380 (10%), Positives = 96/380 (25%), Gaps = 68/380 (17%)

Query: 41  IREAHDNAIISLHFFANE---PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLC 97
            R  H   I       +    P  +    ++   ++           L     H++   C
Sbjct: 8   QRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCC 67

Query: 98  IRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF 157
           ++F  +G ++ + G ++  +++ V        LS    A +  +             I  
Sbjct: 68  VKFSNDGEYLAT-GCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYI-- 124

Query: 158 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFA 217
                                + +    +  V+          +     +      G   
Sbjct: 125 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSG--- 181

Query: 218 VLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIK 277
                         ++             +    +G             + +      ++
Sbjct: 182 -----------SGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVR 230

Query: 278 VWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDR 337
           VWD +   L  R +                                         GH D 
Sbjct: 231 VWDSETGFLVERLDS----------------------------------ENESGTGHKDS 256

Query: 338 ITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-------------ITALSL 384
           +    F+ DG+ ++S  +D S+++W++  A          S             + +++ 
Sbjct: 257 VYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT 316

Query: 385 SPNMDVLATAHVDQNGVYLW 404
           + N + + +   D  GV  W
Sbjct: 317 TQNDEYILSGSKD-RGVLFW 335

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.5 bits (111), Expect = 4e-06
 Identities = 32/258 (12%), Positives = 85/258 (32%), Gaps = 18/258 (6%)

Query: 204 AVKACTISACGNFAVLGTAGG----WIERFNLQSGISRGSYLDMSER-----SNYAHNGE 254
            V     S  G +   G         +   +L + +S  S  +         S+ + +  
Sbjct: 64  VVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLY 123

Query: 255 VVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD 314
           +  V        + +      I++WD + R +    +     +  + +  +G        
Sbjct: 124 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 183

Query: 315 LV-IRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI 373
              +R++D+   +            T      DGK++ +  +D ++R+WD      ++ +
Sbjct: 184 DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL 243

Query: 374 HVDV--------SITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEI 425
             +         S+ ++  + +   + +  +D++     +       DS   +  + +  
Sbjct: 244 DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT 303

Query: 426 VSVKMPSVSSVEGCQDEN 443
                  V SV   Q++ 
Sbjct: 304 YIGHKDFVLSVATTQNDE 321

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.0 bits (102), Expect = 4e-05
 Identities = 35/294 (11%), Positives = 76/294 (25%), Gaps = 41/294 (13%)

Query: 2   RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL 61
              + ++ FS DG+      A+     +  +     + ++     +              
Sbjct: 121 DLYIRSVCFSPDGK----FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD 176

Query: 62  MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 121
              S      + I+D   G        S             +G++I +   DRA R++  
Sbjct: 177 KLVSGSGDRTVRIWDLRTGQCS--LTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS 234

Query: 122 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMD----- 176
                   L   + +    K            V +        RD  +VV+  +D     
Sbjct: 235 ETGFLVERLDSENESGTGHK----------DSVYSVVFT----RDGQSVVSGSLDRSVKL 280

Query: 177 --TAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG 234
                A                    +   V +   +    + + G+    +  ++ +SG
Sbjct: 281 WNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG 340

Query: 235 ISRGSYLDMSERSNYAHNGEVVGVAC------DSTNTLMISAGYHGDIKVWDFK 282
                           H   V+ VA            +  +       ++W +K
Sbjct: 341 NPLLML--------QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 94.9 bits (234), Expect = 1e-21
 Identities = 40/366 (10%), Positives = 101/366 (27%), Gaps = 21/366 (5%)

Query: 4   AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR-EAHDNAIISLHFFANEPVLM 62
            ++  A++ D    +A   ++  + I+     +   V   + H+  +  + +  +   ++
Sbjct: 9   PISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIV 67

Query: 63  SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI 122
           +   D +  +W         +        +    C+R+  N +        R   +    
Sbjct: 68  TCGTDRNAYVW--TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125

Query: 123 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYV 182
           Q+             R+  L +      +         + R                 + 
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185

Query: 183 WRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD 242
            ++    L       C      V     SA G+     +    +   +    ++  +   
Sbjct: 186 SKMPFGELMFESSSSC----GWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS 241

Query: 243 MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYH 302
            +                  T + +++AG+     ++ +     K  +     + K    
Sbjct: 242 ETLPLLA---------VTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQ 292

Query: 303 RVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKW----LLSSGMDGS 358
           R         +       +  A         H + ++       GK       ++GMDG 
Sbjct: 293 RGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGG 352

Query: 359 LRIWDV 364
           + IWDV
Sbjct: 353 MSIWDV 358

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 83.4 bits (204), Expect = 9e-18
 Identities = 37/363 (10%), Positives = 95/363 (26%), Gaps = 19/363 (5%)

Query: 47  NAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH 106
             I    +  +   +     ++ + ++  + +      +     H+     + +  +   
Sbjct: 8   EPISCHAWNKDRTQIAICPNNHEVHIY--EKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65

Query: 107 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERD 166
           I++ G DR   ++++        L    + + AR ++    E K           I   +
Sbjct: 66  IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125

Query: 167 WCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWI 226
             N         +     + +     + +               S      +       +
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLL----------AAGSCDFKCRIFSAYIKEV 175

Query: 227 ERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDL 286
           E     +              + +  G V GV   +  + +    +   + + D   +  
Sbjct: 176 EERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA 235

Query: 287 KSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSED 346
            +        +  V       L     D    LF   +      F G  D          
Sbjct: 236 VATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGL 295

Query: 347 GKWLLSSGMDGSLRIWD-VILARQIDAIHVDVSITALSLSP----NMDVLATAHVDQNGV 401
                   +D              +D++H + S++ +S+            T  +D  G+
Sbjct: 296 TARERFQNLDKKASSEGSAAAGAGLDSLHKN-SVSQISVLSGGKAKCSQFCTTGMD-GGM 353

Query: 402 YLW 404
            +W
Sbjct: 354 SIW 356

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.7 bits (127), Expect = 3e-08
 Identities = 11/81 (13%), Positives = 33/81 (40%), Gaps = 6/81 (7%)

Query: 334 HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV----DVSITALSLSPNMD 389
             + I+   +++D   +     +  + I++     +   +H     +  +T +  +P+ +
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKS-GNKWVQVHELKEHNGQVTGVDWAPDSN 64

Query: 390 VLATAHVDQNGVYLWVNRCMF 410
            + T   D+N  Y+W  +   
Sbjct: 65  RIVTCGTDRN-AYVWTLKGRT 84

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.3 bits (222), Expect = 4e-20
 Identities = 28/359 (7%), Positives = 91/359 (25%), Gaps = 38/359 (10%)

Query: 8   LAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD 67
              ++DGQ          +I       R  + +    H   + ++        + +    
Sbjct: 15  FHVTADGQMQPVPFPPDALIGPG--IPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-K 71

Query: 68  NSIKMW-IFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ 126
             +K+W I    +  P                +   +G  ++  G+     ++ +     
Sbjct: 72  GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP 131

Query: 127 SRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ 186
             +                              A        +  +    +  +      
Sbjct: 132 RIKAELTS------------------------SAPACYALAISPDSKVCFSCCSDGNIAV 167

Query: 187 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSER 246
             +  + ++R    +        IS  G     G     +  ++           +  + 
Sbjct: 168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD---------LREGRQL 218

Query: 247 SNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG 306
             +    ++  +    T   +       +++V      D          ++ + +     
Sbjct: 219 QQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGK 278

Query: 307 LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI 365
              +   D ++  +       + +    +  +     S D K++++   D    +++VI
Sbjct: 279 WFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (160), Expect = 2e-12
 Identities = 45/355 (12%), Positives = 91/355 (25%), Gaps = 36/355 (10%)

Query: 51  SLHFFAN-EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS 109
           S H  A+ +   +    D  I   I                H      +      RH+ +
Sbjct: 14  SFHVTADGQMQPVPFPPDALIGPGIPRH-----ARQINTLNHGEVVCAVTISNPTRHVYT 68

Query: 110 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCN 169
            G     +++ +        +SQ     R                           ++  
Sbjct: 69  GG-KGCVKVWDISHPGNKSPVSQLDCLNR--------------------------DNYIR 101

Query: 170 VVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERF 229
                 D     +   +   L    L        A    +  AC   A+   +       
Sbjct: 102 SCKLLPDGCT-LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCC 160

Query: 230 NLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSR 289
           +  +      +     R    H      +   +  T + + G    ++ WD +      +
Sbjct: 161 SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ 220

Query: 290 WEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKW 349
            +    +  + Y    G    V  +        V      +   H   +    F+  GKW
Sbjct: 221 HDFTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKW 279

Query: 350 LLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLW 404
            +S+G D  L  W       I       S+ +  +S +   + T   D+    ++
Sbjct: 280 FVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKK-ATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 5e-08
 Identities = 8/67 (11%), Positives = 27/67 (40%), Gaps = 3/67 (4%)

Query: 7   ALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA 66
           +L F+  G+    S     +++ W         + +    ++++S     ++  +++ S 
Sbjct: 270 SLKFAYCGK-WFVSTGKDNLLNAWRTPYGAS--IFQSKESSSVLSCDISVDDKYIVTGSG 326

Query: 67  DNSIKMW 73
           D    ++
Sbjct: 327 DKKATVY 333

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 88.8 bits (218), Expect = 1e-19
 Identities = 43/354 (12%), Positives = 95/354 (26%), Gaps = 49/354 (13%)

Query: 41  IREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRF 100
           I +A  + I  +    ++ +L+  S D S+ ++ FD    +  LL+    +  P LC  F
Sbjct: 6   IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS-LRYKHPLLCCNF 64

Query: 101 YANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 160
             N    +  G  +   L   +    S +    +                        C 
Sbjct: 65  IDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNN------------------EANLGICR 106

Query: 161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG 220
             +  D   +        +    R     +               K  T+    +  ++G
Sbjct: 107 ICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVG 166

Query: 221 TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD 280
                ++ F L         ++     +                     +   G + V  
Sbjct: 167 MNNSQVQWFRLPLCEDDNGTIEE----SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEF 222

Query: 281 FKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITD 340
           F  +          +                              R+  K       +  
Sbjct: 223 FDDQGDDYNSSKRFAFRCH--------------------------RLNLKDTNLAYPVNS 256

Query: 341 FCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATA 394
             FS   K+L ++G DG +  W++   ++I         + + ++ + ++L  A
Sbjct: 257 IEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLA 310

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.2 bits (136), Expect = 2e-09
 Identities = 13/90 (14%), Positives = 31/90 (34%), Gaps = 4/90 (4%)

Query: 325 LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ----IDAIHVDVSIT 380
           +++V+  +   D I+D         LL +  DGSL ++   +  +    + ++     + 
Sbjct: 1   MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL 60

Query: 381 ALSLSPNMDVLATAHVDQNGVYLWVNRCMF 410
             +   N D+       Q  +         
Sbjct: 61  CCNFIDNTDLQIYVGTVQGEILKVDLIGSP 90

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 84.0 bits (206), Expect = 4e-18
 Identities = 23/382 (6%), Positives = 76/382 (19%), Gaps = 49/382 (12%)

Query: 8   LAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN-EPVLMSASA 66
            A  +  +  +        + + ++    +             +     +     +  + 
Sbjct: 2   PALKAGHE-YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH 60

Query: 67  DNSIKMWIFD--TTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQD 124
              I     D         L                  +G+ + +            +  
Sbjct: 61  YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 120

Query: 125 QQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR 184
               E+        A+ ++                 ++      +  + ++     Y   
Sbjct: 121 PPRLEVFSTADGLEAKPVRT-----------FPMPRQVYLMRAADDGSLYVAGPDIYKMD 169

Query: 185 LQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMS 244
           ++       +           +    +    +     +                      
Sbjct: 170 VKTGKYTVAL-----PLRNWNRKGYSAPDVLYFWPHQSPRHE------------------ 206

Query: 245 ERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK-GRDLKSRWEVGCSLVKIVYHR 303
                  +                +A         D K G+     +     L       
Sbjct: 207 ------FSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRS 260

Query: 304 VNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 363
                        +  +D+   ++++             F + G  L   G    L +++
Sbjct: 261 PKDPNQIYGVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFN 319

Query: 364 VILARQIDAIHV---DVSITAL 382
                ++  I +   D+S T  
Sbjct: 320 PDTLEKVKNIKLPGGDMSTTTP 341

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 64.8 bits (156), Expect = 8e-12
 Identities = 27/303 (8%), Positives = 68/303 (22%), Gaps = 22/303 (7%)

Query: 3   GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR-----EAHDNAIISLHFFAN 57
                   + D +         G I   +L+  +                ++ S     +
Sbjct: 40  FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPD 99

Query: 58  EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD---- 113
              + +           +        +     G  A P+         +++ A  D    
Sbjct: 100 GKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLY 159

Query: 114 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTC 173
            A      +  +  +      +    RK     + L   P  +                 
Sbjct: 160 VAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDD 219

Query: 174 HMDTAQAYVW---RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFN 230
             D A A +       +   G+   +   +          S       +      + +++
Sbjct: 220 KQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPN-QIYGVLNRLAKYD 278

Query: 231 LQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRW 290
           L+                   +     VA D     +   G   D+ V++    +     
Sbjct: 279 LKQR---------KLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNI 329

Query: 291 EVG 293
           ++ 
Sbjct: 330 KLP 332

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 40.9 bits (94), Expect = 4e-04
 Identities = 9/95 (9%), Positives = 28/95 (29%), Gaps = 2/95 (2%)

Query: 343 FSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV--SITALSLSPNMDVLATAHVDQNG 400
                ++++ +    +L + DV       +  +          ++P+       +     
Sbjct: 4   LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63

Query: 401 VYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSS 435
           +Y        +      S   G+   S+   ++S 
Sbjct: 64  IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP 98

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 38.2 bits (87), Expect = 0.003
 Identities = 17/165 (10%), Positives = 37/165 (22%), Gaps = 12/165 (7%)

Query: 257 GVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV--GCSLVKIVYHRVNG-LLATVAD 313
           G A  + +  MI   Y  ++ V D     +     +         +    N         
Sbjct: 1   GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH 60

Query: 314 DLVIRLFDVVALRMVRKF------EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA 367
              I   D+   +                 +  F  S DGK + ++           ++ 
Sbjct: 61  YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 120

Query: 368 RQIDAIHVDVSITA---LSLSPNMDVLATAHVDQNGVYLWVNRCM 409
                +           +   P    +       +G        +
Sbjct: 121 PPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDI 165

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 78.4 bits (191), Expect = 4e-16
 Identities = 39/379 (10%), Positives = 86/379 (22%), Gaps = 39/379 (10%)

Query: 7   ALAFS-SDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS 65
           A  FS  DG  L+A   S G   I ++       V++      I  +    +  V     
Sbjct: 7   AEDFSPLDGD-LIAF-VSRGQAFIQDVSGTY---VLKVPEPLRIRYVRRGGDTKVAFIHG 61

Query: 66  ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ 125
                 + I+D   G          +      +    NG+  + A          +   +
Sbjct: 62  TREGDFLGIYDYRTG---KAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK 118

Query: 126 QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRL 185
            +     R        +                          +  T        +V+ +
Sbjct: 119 PTVIERSREAMITDFTISD------------NSRFIAYGFPLKHGETDGYVMQAIHVYDM 166

Query: 186 QNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSE 245
           +        +       +   A    A        +        +     +    +    
Sbjct: 167 EG-----RKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL-NFSFEVVSKP 220

Query: 246 RSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVN 305
                  G          +    +  Y  +         ++          ++      +
Sbjct: 221 FVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYS 280

Query: 306 G--------LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG 357
                          +  V+  +DV      RK     + +TD   S D K ++    DG
Sbjct: 281 VPVHGEFAAYYQGAPEKGVLLKYDVKT----RKVTEVKNNLTDLRLSADRKTVMVRKDDG 336

Query: 358 SLRIWDVILARQIDAIHVD 376
            +  + +        +  D
Sbjct: 337 KIYTFPLEKPEDERTVETD 355

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.5 bits (181), Expect = 3e-15
 Identities = 54/332 (16%), Positives = 103/332 (31%), Gaps = 59/332 (17%)

Query: 42  REAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY 101
           R      +  L +  ++  ++S   DN+IK+W  D         R  +GH+   LC+++ 
Sbjct: 11  RSETSKGVYCLQY--DDQKIVSGLRDNTIKIW--DKNTL--ECKRILTGHTGSVLCLQYD 64

Query: 102 ANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE 161
                  S+         +  +   +       V        M     K + +  +D A 
Sbjct: 65  ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMAS 124

Query: 162 IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT 221
             +     V+  H        +                                + V  +
Sbjct: 125 PTDITLRRVLVGHRAAVNVVDF-----------------------------DDKYIVSAS 155

Query: 222 AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH-GDIKVWD 280
               I+ +N  +                  NG   G+AC      ++ +G     I++WD
Sbjct: 156 GDRTIKVWNTSTC-----------EFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWD 204

Query: 281 FKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA---------LRMVRKF 331
            +        E G   +       N  + + A D  I+++D+VA            +R  
Sbjct: 205 IECGACLRVLE-GHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL 263

Query: 332 EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 363
             H+ R+    F  D   ++SS  D ++ IWD
Sbjct: 264 VEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 3e-06
 Identities = 34/290 (11%), Positives = 82/290 (28%), Gaps = 26/290 (8%)

Query: 4   AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS 63
            V  L +  D Q  + SG     I IW+      + ++   H  +++ L +     +  S
Sbjct: 17  GVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRIL-TGHTGSVLCLQYDERVIITGS 72

Query: 64  ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 123
           + +   +                    H      +    +    ++     +    ++ +
Sbjct: 73  SDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR 132

Query: 124 DQQSRELSQRHVAKRARKLKMK----------EEELKLKPVIAFDCAEIRERDWCN--VV 171
                  +   V    + +                 +    +      I    + +  VV
Sbjct: 133 VLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVV 192

Query: 172 TCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL 231
           +   D     +W ++       +               I       V G   G I+ ++L
Sbjct: 193 SGSSDN-TIRLWDIECGACLRVLEGHEELV------RCIRFDNKRIVSGAYDGKIKVWDL 245

Query: 232 QSGISRGSYLDMSE-RSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD 280
            + +   +       R+   H+G V  +  D     ++S+ +   I +WD
Sbjct: 246 VAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE--FQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 3e-05
 Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 325 LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 364
           L+ +      +  +   C   D + ++S   D +++IWD 
Sbjct: 5   LQRIHCRSETSKGVY--CLQYDDQKIVSGLRDNTIKIWDK 42

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 8e-04
 Identities = 20/135 (14%), Positives = 46/135 (34%), Gaps = 6/135 (4%)

Query: 272 YHGDIKVWDFKGRDLKSRWEVGC--SLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR 329
               I VWD       +   V         V    +  + + + D  I++++      VR
Sbjct: 113 KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVR 172

Query: 330 KFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMD 389
              GH   I    +    + ++S   D ++R+WD+     +  +     +    +  +  
Sbjct: 173 TLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR-CIRFDNK 229

Query: 390 VLATAHVDQNGVYLW 404
            + +   D   + +W
Sbjct: 230 RIVSGAYDGK-IKVW 243

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 72.7 bits (176), Expect = 1e-14
 Identities = 32/298 (10%), Positives = 80/298 (26%), Gaps = 19/298 (6%)

Query: 83  RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRH-------- 134
            + + R GH+     +   A+G+ + SA  +     + +     +R     H        
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62

Query: 135 ------VAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNF 188
                 +   +    +K        V +      +       +    D   A     ++ 
Sbjct: 63  TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI 122

Query: 189 VLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSN 248
            +  H                +S    F  +G     +  + L           +     
Sbjct: 123 AIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEI 182

Query: 249 YAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLL 308
            +                  S          +F+     S       +  + +   N  L
Sbjct: 183 TSVAFSNN---GAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRL 239

Query: 309 ATVADDLVIRLFDVV--ALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 364
           AT + D  + ++++   +   +     H     +     +   ++S+G D +++ W+V
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.6 bits (103), Expect = 2e-05
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 53  HFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ 112
            +  +   L + S DNS+ +W  +        +  +  H+   +    + N   I+SAGQ
Sbjct: 231 SWSPDNVRLATGSLDNSVIVW--NMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQ 288

Query: 113 DRAFRLFSV 121
           D   + ++V
Sbjct: 289 DSNIKFWNV 297

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.3 bits (170), Expect = 2e-13
 Identities = 41/356 (11%), Positives = 106/356 (29%), Gaps = 23/356 (6%)

Query: 9   AFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADN 68
               +    + +GA   +I +++   ++    +   HD  + +L  +A+  +L+S S D 
Sbjct: 18  CLQFEDN-YVITGADDKMIRVYDSINKKFLLQL-SGHDGGVWALK-YAHGGILVSGSTDR 74

Query: 69  SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR 128
           ++++W                  +   L I  Y N ++I++  +D    ++ + ++    
Sbjct: 75  TVRVWDIKKGCCTHV--FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP 132

Query: 129 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNF 188
           +  + H          +                        VV+   D            
Sbjct: 133 DHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDN----------- 181

Query: 189 VLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSN 248
                ++         +   +      ++ +                 R   L+  E   
Sbjct: 182 ----TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY 237

Query: 249 YAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLL 308
                  +      ++  ++SA   G I+ WD      K  +    +L  I    V+  +
Sbjct: 238 TLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHT-NLSAITTFYVSDNI 296

Query: 309 ATVADDLVIRLFDVVALRMVRK-FEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 363
                +    ++++ + ++V        D+I    F      + +   DG   +  
Sbjct: 297 LVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTL-VAAVEKDGQSFLEI 351

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.3 bits (131), Expect = 1e-08
 Identities = 42/363 (11%), Positives = 108/363 (29%), Gaps = 20/363 (5%)

Query: 43  EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA 102
             H  ++I+      +  +++ + D  I+++  D+ +   + L   SGH      +++ A
Sbjct: 9   RGHMTSVITC-LQFEDNYVITGADDKMIRVY--DSINK--KFLLQLSGHDGGVWALKY-A 62

Query: 103 NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI 162
           +G  ++S   DR  R++ + +   +      +   R   +   +       V       +
Sbjct: 63  HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN--IKYIVTGSRDNTL 120

Query: 163 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA 222
                    +   D  + + + L      E+               T+S  GN  V G+ 
Sbjct: 121 HVWKL-PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSY 179

Query: 223 GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 282
              +  +++            ++R                            D  +  + 
Sbjct: 180 DNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCIS----------ASMDTTIRIWD 229

Query: 283 GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC 342
             + +  + +      +   R++      A                +    HT+      
Sbjct: 230 LENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITT 289

Query: 343 FSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVY 402
           F      +L SG +    I+++   + + A  +  +    S++     L  A       +
Sbjct: 290 FYVSDN-ILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSF 348

Query: 403 LWV 405
           L +
Sbjct: 349 LEI 351

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.3 bits (118), Expect = 4e-07
 Identities = 17/131 (12%), Positives = 42/131 (32%), Gaps = 5/131 (3%)

Query: 331 FEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI--HVDVSITALSLSPNM 388
             GH   +   C   +  ++++   D  +R++D I  + +  +  H    + AL  +   
Sbjct: 8   LRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDG-GVWALKYAHG- 64

Query: 389 DVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQPD 448
            +L +   D+      + +   +      +       +         V G +D       
Sbjct: 65  GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 124

Query: 449 VHRTDRVPKDS 459
           + +   VP   
Sbjct: 125 LPKESSVPDHG 135

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (96), Expect = 2e-04
 Identities = 21/161 (13%), Positives = 56/161 (34%), Gaps = 3/161 (1%)

Query: 251 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLAT 310
           H   V+       +  +I+      I+V+D   +    +       V  + +   G+L +
Sbjct: 11  HMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVS 69

Query: 311 VADDLVIRLFDV--VALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR 368
            + D  +R++D+       V +    T R  D    ++ K++++   D +L +W +    
Sbjct: 70  GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 129

Query: 369 QIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCM 409
            +     +     +  +P  +      +  +   +      
Sbjct: 130 SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH 170

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.1 bits (167), Expect = 4e-13
 Identities = 34/335 (10%), Positives = 95/335 (28%), Gaps = 12/335 (3%)

Query: 80  GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRA 139
           G+ +  +   GH    +       G  I+S   D   +++S +  +  R L        +
Sbjct: 4   GELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS 62

Query: 140 RKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCP 199
            +++                          +          ++   +             
Sbjct: 63  SQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVW 122

Query: 200 ENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVA 259
           +  T      +             G          + +    +     +          +
Sbjct: 123 DIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS 182

Query: 260 CDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRL 319
                  ++S      I+VWD +  +         SL   +  + + +L +   D  +++
Sbjct: 183 LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK-DNILVSGNADSTVKI 241

Query: 320 FDVVALRMVRKFEGHTDRI-TDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS 378
           +D+   + ++  +G         C   +  ++++S  DG++++WD+     I  +    S
Sbjct: 242 WDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLES 301

Query: 379 ------ITALSLSPNMDVLATAHVD---QNGVYLW 404
                 +  +  S    V A    +   +  + + 
Sbjct: 302 GGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL 336

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (160), Expect = 2e-12
 Identities = 42/366 (11%), Positives = 93/366 (25%), Gaps = 61/366 (16%)

Query: 9   AFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADN 68
                G   + SG+    + +W+    +    +   H   + S             +   
Sbjct: 22  CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRTL-VGHTGGVWSSQM--------RDNIII 71

Query: 69  SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR 128
           S                   + +         + + + ++S  +D   R++ +   Q   
Sbjct: 72  SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLH 131

Query: 129 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNF 188
            L     A R                          +     V          VW  +  
Sbjct: 132 VLMGHVAAVR------------------------CVQYDGRRVVSGAYDFMVKVWDPETE 167

Query: 189 VLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSN 248
               H L+            ++   G   V G+    I  +++++             + 
Sbjct: 168 TC-LHTLQGHTNRV-----YSLQFDGIHVVSGSLDTSIRVWDVET--------GNCIHTL 213

Query: 249 YAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHR--VNG 306
             H     G+     + +++S      +K+WD K        +        V        
Sbjct: 214 TGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN 271

Query: 307 LLATVADDLVIRLFDVVALRMVRKF-----EGHTDRITDFCFSEDGKWLLSSGMDGS--- 358
            + T +DD  ++L+D+     +R        G    +     S           +G+   
Sbjct: 272 FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEET 331

Query: 359 -LRIWD 363
            L + D
Sbjct: 332 KLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (115), Expect = 1e-06
 Identities = 16/114 (14%), Positives = 43/114 (37%), Gaps = 4/114 (3%)

Query: 1   MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPV 60
            +   + +    +   +L SG +   + IW+++  +    ++  + +         N+  
Sbjct: 216 HQSLTSGMELKDN---ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNF 272

Query: 61  LMSASADNSIKMWIFDTTDGDPRLLRFRS-GHSAPPLCIRFYANGRHILSAGQD 113
           ++++S D ++K+W   T +    L+   S G       IR            ++
Sbjct: 273 VITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRN 326

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.8 bits (166), Expect = 4e-13
 Identities = 33/323 (10%), Positives = 92/323 (28%), Gaps = 20/323 (6%)

Query: 47  NAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRF--YANG 104
           N    L +      +      ++    + D     P +++F    S+    ++F      
Sbjct: 18  NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77

Query: 105 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE 164
           +++ S  +     ++    D++S  +     ++         +       I++D    R 
Sbjct: 78  QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISD-------ISWDFEGRRL 130

Query: 165 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG 224
                                   V G            +    +++   + +V+   G 
Sbjct: 131 CVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGP 190

Query: 225 WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR 284
             +         +          +            +   T+                 +
Sbjct: 191 PFKFSASDRTHHKQGSFVRDVEFSPDS--------GEFVITVGSDRKISCFDGKSGEFLK 242

Query: 285 DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDF--- 341
            ++   E     +  +    +   ATV  D  IR++DV   + V+K+     ++ +    
Sbjct: 243 YIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVG 302

Query: 342 CFSEDGKWLLSSGMDGSLRIWDV 364
             +     ++S  +DG+L  +++
Sbjct: 303 VVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.2 bits (154), Expect = 1e-11
 Identities = 29/333 (8%), Positives = 79/333 (23%), Gaps = 36/333 (10%)

Query: 2   RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSV--IREAHDNAIISLHF--FAN 57
           R   T L++      +      S  +   +    ++  V        + + ++ F     
Sbjct: 17  RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKG 76

Query: 58  EPVLMSASADNSIKMWIFDTTDGDPRLLRF----RSGHSAPPLCIRFYANGRHILSAGQD 113
              L S      + +W +        +           + P   I +   GR +   G+ 
Sbjct: 77  SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG 136

Query: 114 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTC 173
           R      +  D  +        ++R                   +   +++      +T 
Sbjct: 137 RDNFGVFISWDSGNSLGEVSGHSQR------------------INACHLKQSRPMRSMTV 178

Query: 174 HMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS 233
             D        +  +                  +       +               +  
Sbjct: 179 GDD------GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISC 232

Query: 234 GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG 293
              +          +       +       +    + G    I+VWD        +W + 
Sbjct: 233 FDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLD 292

Query: 294 CSLVKI----VYHRVNGLLATVADDLVIRLFDV 322
              +      V    NG + +++ D  +  +++
Sbjct: 293 KQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 68.4 bits (165), Expect = 5e-13
 Identities = 43/322 (13%), Positives = 84/322 (26%), Gaps = 31/322 (9%)

Query: 2   RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL 61
           RG    L  +  G   +     + V     +       +  E H +         +    
Sbjct: 17  RGTAVVLGNTPAGD-KIQYCNGTSVY-TVPVGSLTDTEIYTE-HSHQTTVAKTSPSGYYC 73

Query: 62  MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 121
            S     ++++W          L       S P   I + +  + I + G+ R       
Sbjct: 74  ASGDVHGNVRIWDTT--QTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVF 131

Query: 122 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY 181
           + D  +   +    A+    +  K          + D                      +
Sbjct: 132 LFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKF 191

Query: 182 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYL 241
           V                            +  G+        G I  +N   G   G + 
Sbjct: 192 VHS-----------------------VRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVF- 227

Query: 242 DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVY 301
           +     N AH+G V G+      T + SA     IK+W+     ++    VG  +     
Sbjct: 228 EDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQL 287

Query: 302 --HRVNGLLATVADDLVIRLFD 321
                   L +++ +  I   +
Sbjct: 288 GIIWTKQALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.8 bits (109), Expect = 4e-06
 Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 1/66 (1%)

Query: 297 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 356
           V +        +       V     V +L     +  H+ + T    S  G +  S  + 
Sbjct: 21  VVLGNTPAGDKIQYCNGTSVY-TVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVH 79

Query: 357 GSLRIW 362
           G++RIW
Sbjct: 80  GNVRIW 85

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.3 bits (105), Expect = 1e-05
 Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 3/80 (3%)

Query: 327 MVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI--HVDVSITALSL 384
              K   H+  +    +S DG  + S+  D +++IW+V   +    I     +    L +
Sbjct: 230 DSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGI 289

Query: 385 SPNMDVLATAHVDQNGVYLW 404
                 L +   +   +   
Sbjct: 290 IWTKQALVSISANGF-INFV 308

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 66.0 bits (159), Expect = 4e-12
 Identities = 27/332 (8%), Positives = 75/332 (22%), Gaps = 11/332 (3%)

Query: 61  LMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD----RAF 116
           +++ +  + + +   DT       +   +     P+       GR   +           
Sbjct: 4   ILAPARPDKLVVI--DTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 117 RLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMD 176
            L +     +    +     K      +  +   L    +    E+   +         D
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121

Query: 177 TAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS 236
                  +         +L    +              +            +       +
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYA 181

Query: 237 RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSL 296
           +   L +  +   +                     Y   +   D +  ++  R      +
Sbjct: 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV 241

Query: 297 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 356
                              V+  FD+     +++             S DG  +   G  
Sbjct: 242 FYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGAL 300

Query: 357 GSLRIWDVILARQIDAIHV----DVSITALSL 384
           G L  +D     +   + +     +S+ ++ L
Sbjct: 301 GDLAAYDAETLEKKGQVDLPGNASMSLASVRL 332

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 52.9 bits (125), Expect = 6e-08
 Identities = 30/301 (9%), Positives = 77/301 (25%), Gaps = 26/301 (8%)

Query: 3   GAVTALAFSSDGQPLLASGASSGVISIWNLE----KRRLQSVIREAHDNAIISLHFFANE 58
                   +  G+   A+   S  +   +L       R+     E    ++       + 
Sbjct: 34  PTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDG 93

Query: 59  PVLMSASADNSIKMWIFDTT-------DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG 111
             L    +   +++  F+         D +    R           + +  +G  +   G
Sbjct: 94  KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG 153

Query: 112 QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVV 171
           +D        + D ++  L +    +        + ++            +    +    
Sbjct: 154 RDL------HVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARK 207

Query: 172 TCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL 231
                   AY   L    L    +         V   + +          A   +E F+L
Sbjct: 208 DIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDL 267

Query: 232 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE 291
           +           +             V   +  + +   G  GD+  +D +  + K + +
Sbjct: 268 EKN---------ASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318

Query: 292 V 292
           +
Sbjct: 319 L 319

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.0 bits (159), Expect = 4e-12
 Identities = 53/398 (13%), Positives = 106/398 (26%), Gaps = 59/398 (14%)

Query: 43  EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGH---------SA 93
           +AHD  I S+         +S S D  +K+W     D +    +  S             
Sbjct: 11  KAHDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68

Query: 94  PPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKE------- 146
                R       + +         + + ++ +++++    +      +K          
Sbjct: 69  LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWG 128

Query: 147 ----EELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP 202
                 L  + V            +             +   L+        +       
Sbjct: 129 ASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQ----GTVESPMTPS 184

Query: 203 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS 262
               +  IS  G  A  G   G ++   L +      Y   S+ S   ++  +  V    
Sbjct: 185 QFATSVDISERGLIAT-GFNNGTVQISELSTLRPL--YNFESQHSMINNSNSIRSVKFSP 241

Query: 263 TNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDV 322
             +L+  A              +   R                                 
Sbjct: 242 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSV-------------------------PT 276

Query: 323 VALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH-----VDV 377
            + +       H+  +    F++ G+ L S+G DG LR WDV    +I  ++     +++
Sbjct: 277 HSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEI 336

Query: 378 SITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSN 415
               L++  + D LA   V          R     D N
Sbjct: 337 EEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLN 374

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.6 bits (132), Expect = 9e-09
 Identities = 42/431 (9%), Positives = 102/431 (23%), Gaps = 92/431 (21%)

Query: 2   RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA----- 56
              + +++  +       S +  G + +W+ +    ++   +++ + +            
Sbjct: 14  DADIFSVSACNS---FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ 70

Query: 57  -------NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS 109
                     ++ + S    +  +     D   ++           L      +    L 
Sbjct: 71  AIERDAFELCLVATTSFSGDLLFYRITREDETKKV----IFEKLDLLDSDMKKHSFWALK 126

Query: 110 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCN 169
            G      L   +                               V            +  
Sbjct: 127 WGASNDRLLSHRL-------------------------------VATDVKGTTYIWKFHP 155

Query: 170 VVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERF 229
                      +   L+        +           +  IS  G  A  G   G ++  
Sbjct: 156 FADESNSLTLNWSPTLELQ----GTVESPMTPSQFATSVDISERGLIAT-GFNNGTVQIS 210

Query: 230 NLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDI---KVWDFKGRDL 286
            L     R  Y   S+ S   ++  +  V      +L+  A          +++ +  + 
Sbjct: 211 ELS--TLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER 268

Query: 287 KSRWEVGCSLVKIV--------------YHRVNGLLATVADDLVIRLFDVVALRMVRKFE 332
                V     +                ++     L +   D  +R +DV     +    
Sbjct: 269 IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN 328

Query: 333 GHTDRI----TDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNM 388
            H D I          E G  L   G      ++DV          +     +   +   
Sbjct: 329 MHCDDIEIEEDILAVDEHGDSLAEPG------VFDV--------KFLKKGWRSGMGADLN 374

Query: 389 DVLATAHVDQN 399
           + L    +D++
Sbjct: 375 ESLCCVCLDRS 385

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.2 bits (110), Expect = 4e-06
 Identities = 14/91 (15%), Positives = 27/91 (29%), Gaps = 17/91 (18%)

Query: 328 VRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV--------------ILARQIDAI 373
               + H   I          + +S   DG L++WD                   +    
Sbjct: 7   ANAGKAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLH 64

Query: 374 HVDVSITALSLSPNMDVLATAHVDQNGVYLW 404
           HVDV       +  + ++AT     + +  +
Sbjct: 65  HVDVLQAIERDAFELCLVATTSFSGD-LLFY 94

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.5 bits (98), Expect = 1e-04
 Identities = 38/349 (10%), Positives = 94/349 (26%), Gaps = 59/349 (16%)

Query: 4   AVTALAFSSDGQPLLASGASSGVISIWNLEKRR---------LQSVIREAHDNAIISLHF 54
            + A+   +    L+A+ + SG +  + + +           L  +  +   ++  +L +
Sbjct: 68  VLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKW 127

Query: 55  FANEP-----VLMSASADNSIKMWIFDTTDGDPRLLRFRS--------------GHSAPP 95
            A+        L++     +  +W F     +   L                    S   
Sbjct: 128 GASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFA 187

Query: 96  LCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI 155
             +     G  I +   +   ++  +   +       +H            +      ++
Sbjct: 188 TSVDISERGL-IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLL 246

Query: 156 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN 215
           A         +    +T +       +  L               + + V + + +  G 
Sbjct: 247 AIAHDS----NSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE 302

Query: 216 FAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEV----VGVACDSTNTLMISAG 271
                   G +  +++++     +           H  ++      +A D     +   G
Sbjct: 303 TLCSAGWDGKLRFWDVKTKERITTL--------NMHCDDIEIEEDILAVDEHGDSLAEPG 354

Query: 272 YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLF 320
                 V+D K      R  +G          +N  L  V  D  IR F
Sbjct: 355 ------VFDVKFLKKGWRSGMG--------ADLNESLCCVCLDRSIRWF 389

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.4 bits (152), Expect = 1e-11
 Identities = 37/292 (12%), Positives = 79/292 (27%), Gaps = 11/292 (3%)

Query: 80  GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVA-KR 138
           G   +L+  SGH+     +        ++S   D     +S     Q        +   +
Sbjct: 1   GHDEVLKTISGHNKGITALTV----NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSK 56

Query: 139 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 198
           A++      +  LK           +    +               L         +   
Sbjct: 57  AQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKS 116

Query: 199 PENPTAVKACTIS----ACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGE 254
               +   A ++S    A G           +    +   +        S  S       
Sbjct: 117 VRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETY 176

Query: 255 VVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD 314
           +          L            W F+   + +                  L+AT + D
Sbjct: 177 IAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLD 236

Query: 315 LVIRLFDVV-ALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI 365
             I ++ V   +++++    H D + +  +      L+SSG D  ++ W+V+
Sbjct: 237 TNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVV 287

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.3 bits (97), Expect = 1e-04
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 19  ASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMW 73
           A+G+    I I+++++         AH + + +L  +     L+S+ AD  IK W
Sbjct: 231 ATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLL-WETPSTLVSSGADACIKRW 284

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 58.3 bits (139), Expect = 1e-09
 Identities = 54/401 (13%), Positives = 100/401 (24%), Gaps = 68/401 (16%)

Query: 5   VTALAFSSDGQPLL----ASGASSGVISIWNLEKRRLQSVIREAHDNAII-----SLHFF 55
               A + D + +     A  A+     + + E  R+  +I        +     S    
Sbjct: 4   RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAH 63

Query: 56  ANEPVLMSASADNSIKMWIFDTTDGDPR-----LLRFRSGHSAPPLCIRFYANGRHILSA 110
           A+      A  + +  + +FD     P          R      P       +G+ +L  
Sbjct: 64  ASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFY 123

Query: 111 GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNV 170
               A  +  V  + ++                        + +   DC  I        
Sbjct: 124 QFSPAPAVGVVDLEGKAF----------------------KRMLDVPDCYHIFPTAPDTF 161

Query: 171 VTCHMDTAQAYVWRLQ-NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERF 229
                D + A V           H     PE+   +     S      V  T  G I + 
Sbjct: 162 FMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQI 221

Query: 230 NLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSR 289
           +L SG ++         +  A                 ++     D        R     
Sbjct: 222 DLSSGDAK------FLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQR----- 270

Query: 290 WEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKW 349
                                      + + D      + KFE     I     S+D K 
Sbjct: 271 ----------------DEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKP 313

Query: 350 LL--SSGMDGSLRIWDVILARQIDAI-HVDVSITALSLSPN 387
           LL   S  D +L I D     ++ ++  +      ++ +  
Sbjct: 314 LLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADM 354

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.6 bits (106), Expect = 1e-05
 Identities = 28/314 (8%), Positives = 79/314 (25%), Gaps = 40/314 (12%)

Query: 3   GAVTALAFSSDGQPLLA---------SGASSGVISIWNLEKRRLQSVIREAHDNAII--- 50
           G +     + DG  +            G  +  + +++       + I        +   
Sbjct: 47  GFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGT 106

Query: 51  ---SLHFFANEPVLMSASADNSIKMWIFDTTDGD-----PRLLRFRSGHSAPPLCIRFYA 102
                    +   L+      +  + + D               +    +AP        
Sbjct: 107 YPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCR 166

Query: 103 NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI 162
           +G     A          +   +      +  +   A   K        + V      +I
Sbjct: 167 DGSLAKVAFGTEGTP--EITHTEVFHPEDEFLINHPAYSQKAG------RLVWPTYTGKI 218

Query: 163 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA 222
            + D  +     +   +A     +         +    +    +   +    +     TA
Sbjct: 219 HQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTA 278

Query: 223 GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC--DSTNTLMISAGYHGDIKVWD 280
             ++   + ++G            + +    E+  +    D    L   +     + + D
Sbjct: 279 SRFVVVLDAKTG---------ERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHD 329

Query: 281 FK-GRDLKSRWEVG 293
            + G +L+S  ++G
Sbjct: 330 AESGEELRSVNQLG 343

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 50.6 bits (119), Expect = 3e-07
 Identities = 30/313 (9%), Positives = 92/313 (29%), Gaps = 15/313 (4%)

Query: 57  NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ-DRA 115
            + V +++     I +W  +  +G   L +           +    + R++    + +  
Sbjct: 3   KQTVYIASPESQQIHVWNLNH-EGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFR 60

Query: 116 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHM 175
              + +  D  +   +       +      + + +   V +++   +      + +   +
Sbjct: 61  VLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGV 120

Query: 176 DTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI 235
                 +    +  +               + C  +   +  ++      +         
Sbjct: 121 VDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVE--GAG 178

Query: 236 SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCS 295
            R      +E+  Y  N        +S+  +      HG+I+         ++  +   +
Sbjct: 179 PRHMVFHPNEQYAYCVNE------LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWA 232

Query: 296 LVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT---DRITDFCFSEDGKWLLS 352
               +      L A      +I +F V     V   EG      +   F     GK+L++
Sbjct: 233 ADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIA 292

Query: 353 SGMD-GSLRIWDV 364
           +G     + ++++
Sbjct: 293 AGQKSHHISVYEI 305

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 29/282 (10%), Positives = 59/282 (20%), Gaps = 16/282 (5%)

Query: 3   GAVTALAFSSDGQPLLASGASSGVISIWNLE--KRRLQSVIREAHDNAIISLHFFANEPV 60
           G V  +  S D + L         +  + +      L      A   ++  +        
Sbjct: 37  GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQF 96

Query: 61  LMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS 120
           +   S +                ++    G            N    + A +     LF+
Sbjct: 97  VFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFT 156

Query: 121 VIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQA 180
           V  D          V             +   P   +           +V          
Sbjct: 157 VSDDGHLVAQDPAEVTTVE---GAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNI 213

Query: 181 YVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 240
              +  + +           +             +          I  F++    S  S 
Sbjct: 214 ECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDR-----TASLITVFSVSEDGSVLSK 268

Query: 241 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD-IKVWDF 281
                           G   D +   +I+AG     I V++ 
Sbjct: 269 EGFQPTETQPR-----GFNVDHSGKYLIAAGQKSHHISVYEI 305

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 9/132 (6%), Positives = 29/132 (21%), Gaps = 6/132 (4%)

Query: 328 VRKFEGHTDRITDFCFSEDGKWLLSSGM-DGSLRIWDV----ILARQIDAIHVDVSITAL 382
           + +      ++     S D ++L      +  +  + +              +  S+T +
Sbjct: 29  LTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHI 88

Query: 383 SLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDE 442
           S       +     +  G               +D         S  +   +        
Sbjct: 89  STDHQGQFVFVGSYNA-GNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPAL 147

Query: 443 NSSQPDVHRTDR 454
              +  +     
Sbjct: 148 KQDRICLFTVSD 159

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 48.0 bits (113), Expect = 3e-06
 Identities = 32/389 (8%), Positives = 95/389 (24%), Gaps = 47/389 (12%)

Query: 6   TALAFSSDGQPLLA-SGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA 64
                  D   L + +   +G I++ + + +++  VI      A+      A+   L+  
Sbjct: 22  KKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVI--DTGYAVHISRMSASGRYLLVI 79

Query: 65  SADNSIKMWIFDTTDGDPRL-LRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 123
             D  I M      +      ++      +           R+ ++         F+++ 
Sbjct: 80  GRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQ--FAIMD 137

Query: 124 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW 183
            +                 +    E ++  +IA         +    +    +T +  + 
Sbjct: 138 GETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASH-------EHPEFIVNVKETGKVLLV 190

Query: 184 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS--------GI 235
             ++                        +   + +                        +
Sbjct: 191 NYKDIDNLTVTSIGAAPFLADG---GWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDV 247

Query: 236 SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCS 295
            +  +        +   G V   +     ++ +      +   + +K   +      G  
Sbjct: 248 GKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWK--KVAELQGQGGG 305

Query: 296 LVKIVYHR-------VNGLLATVADDLVIRLFDVVALRMVRKFEGHTD---------RIT 339
            + I  H                     + +FD+  L    +     +         R+ 
Sbjct: 306 SLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVV 365

Query: 340 DFCFSEDGKWLLSS-----GMDGSLRIWD 363
              +++ G  +  S         +L + D
Sbjct: 366 QPEYNKRGDEVWFSVWNGKNDSSALVVVD 394

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 43.4 bits (101), Expect = 7e-05
 Identities = 25/189 (13%), Positives = 55/189 (29%), Gaps = 15/189 (7%)

Query: 279 WDFKGRDLKSRWEVGCSLVKIVYHRVNG------LLATVADDLVIRLFDVVALRMVRKFE 332
           W     +++  W+V          ++N          T+ D   I L D  + ++V+  +
Sbjct: 2   WGMP--EMRESWKVLVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVID 59

Query: 333 GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSL------SP 386
                +     S  G++LL  G D  + + D+          + + I A S+        
Sbjct: 60  TG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGY 118

Query: 387 NMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQ 446
                           +     +           +         P V+++    +     
Sbjct: 119 EDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI 178

Query: 447 PDVHRTDRV 455
            +V  T +V
Sbjct: 179 VNVKETGKV 187

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.3 bits (109), Expect = 9e-06
 Identities = 14/106 (13%), Positives = 28/106 (26%), Gaps = 7/106 (6%)

Query: 305 NGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 364
           N    T+ D   I L D     +    +     +     S  G++L   G DG + + D+
Sbjct: 32  NLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDL 90

Query: 365 ILARQIDAIHVDVS------ITALSLSPNMDVLATAHVDQNGVYLW 404
            +        + +        T+                     + 
Sbjct: 91  WMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIM 136

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.5 bits (99), Expect = 1e-04
 Identities = 18/162 (11%), Positives = 42/162 (25%), Gaps = 18/162 (11%)

Query: 261 DSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLF 320
           D  N   ++    G I + D    ++K+  + G ++           L  +  D  + + 
Sbjct: 29  DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMI 88

Query: 321 DVVALRM-----VRKFEGHTDRITDFCFSEDGKWLL-SSGMDGSLRIWDVILARQID--- 371
           D+          ++         T      + K+ +  +       I D           
Sbjct: 89  DLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQS 148

Query: 372 ---------AIHVDVSITALSLSPNMDVLATAHVDQNGVYLW 404
                      H +  + A+  S           +   + L 
Sbjct: 149 TRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLV 190

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 43.3 bits (100), Expect = 5e-05
 Identities = 22/292 (7%), Positives = 67/292 (22%), Gaps = 39/292 (13%)

Query: 3   GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLM 62
                   S DG  +  + A S  +SI +     + + +        +++     +  + 
Sbjct: 32  SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVT 91

Query: 63  SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI 122
           + ++     +     T      +         PL +    +G+ +               
Sbjct: 92  NMASSTLSVIDTTSNT------VAGTVKTGKSPLGLALSPDGKKL--------------- 130

Query: 123 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYV 182
                   +             K     +    +     +        V      + + +
Sbjct: 131 -----YVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVI 185

Query: 183 WRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD 242
             + N V            P+ +             +      +   +  +         
Sbjct: 186 DTVTNSV---IDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN-------- 234

Query: 243 MSERSNYAHNGEVVGVACDST-NTLMISAGYHGDIKVWDFKGRDLKSRWEVG 293
               +      +  G+A       + ++  +   + V D     + +   VG
Sbjct: 235 -KITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVG 285

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	685
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.98
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.97
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.96
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.95
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.92
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.92
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.92
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.91
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.9
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.9
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.89
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.87
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.85
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.84
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.82
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.74
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.73
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.62
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.6
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.6
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.55
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.53
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.43
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.26
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.23
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.2
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.2
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.2
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.18
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.17
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.13
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.11
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.1
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.08
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.08
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.04
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.04
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.83
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.83
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.62
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.59
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.33
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.28
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.24
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.24
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	98.16
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.11
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.06
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.01
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.99
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.98
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.97
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.82
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.82
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.78
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.78
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.56
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.41
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.3
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.17
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.17
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.97
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.96
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.9
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.85
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.69
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.56
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.44
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	94.08
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	93.51
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	93.42
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	93.08
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	92.67
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	91.65
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	90.75
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	89.03
d1wp5a_	323	Topoisomerase IV subunit A, ParC, C-terminal domai	86.3

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-42  Score=350.95  Aligned_cols=282  Identities=11%  Similarity=0.189  Sum_probs=251.6

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeee---EE-eecccccCeeEEEEeCCCcEEEEecCCCcEEEEEec
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ---SV-IREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD   76 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~---~~-~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~   76 (685)
                      |+++|+|++|+|+|+ +||||+ ||.|+|||+.++...   .. ...+|.+.|.+++|+|++++|++++.||+|++||+.
T Consensus        50 H~~~V~~v~fs~~g~-~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~  127 (337)
T d1gxra_          50 HGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA  127 (337)
T ss_dssp             CSSCCCEEEECSSSS-EEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred             CCCcEEEEEECCCCC-EEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccc
Confidence            889999999999999 999987 899999999765322   22 123799999999999999999999999999999987


Q ss_pred             CCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceee
Q 005656           77 TTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA  156 (685)
Q Consensus        77 ~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (685)
                      ....  +....+.+|...+.++.|+|++.++++++.|+.|++|++.+++......                         
T Consensus       128 ~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~-------------------------  180 (337)
T d1gxra_         128 APTP--RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ-------------------------  180 (337)
T ss_dssp             CC----EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-------------------------
T ss_pred             cccc--ccccccccccccccccccccccccccccccccccccccccccccccccc-------------------------
Confidence            5432  5566778899999999999999999999999999999998776544332                         


Q ss_pred             eecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcc
Q 005656          157 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS  236 (685)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~  236 (685)
                                                                 .+...+.+++|+++++.+++|+.+|.+++||+++++.
T Consensus       181 -------------------------------------------~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~  217 (337)
T d1gxra_         181 -------------------------------------------GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ  217 (337)
T ss_dssp             -------------------------------------------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred             -------------------------------------------cccccccccccccccccccccccccccccccccccee
Confidence                                                       5677899999999999999999999999999999887


Q ss_pred             ccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCe
Q 005656          237 RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLV  316 (685)
Q Consensus       237 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  316 (685)
                      ...+         .|...|.+++|+|+++++++++.||.+++||++++.......+...|.+++|+|++++|++++.||.
T Consensus       218 ~~~~---------~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~  288 (337)
T d1gxra_         218 LQQH---------DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL  288 (337)
T ss_dssp             EEEE---------ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             eccc---------ccccceEEEEEcccccccceeccccccccccccccccccccccccccceEEECCCCCEEEEEeCCCe
Confidence            6655         6889999999999999999999999999999999988888788899999999999999999999999


Q ss_pred             EEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005656          317 IRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV  364 (685)
Q Consensus       317 I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~  364 (685)
                      |++||+.+++.+..+. |.+.|++++|+|++++|++|+.||+|+|||+
T Consensus       289 i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         289 LNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EEEEECCCCCEEEEcc-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            9999999999988765 8889999999999999999999999999996

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-41  Score=343.66  Aligned_cols=292  Identities=13%  Similarity=0.215  Sum_probs=256.4

Q ss_pred             eeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCC-ceeEecccCCCCCeEEEEecCCCEEEEEeCCC
Q 005656           36 RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP-RLLRFRSGHSAPPLCIRFYANGRHILSAGQDR  114 (685)
Q Consensus        36 ~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~-~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg  114 (685)
                      +.+..+  .|...|.+++|+|+|++|+||+ ||.|+|||+....... .......+|...|.+++|+|++++|++++.||
T Consensus        43 ~~~~~~--~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg  119 (337)
T d1gxra_          43 RQINTL--NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS  119 (337)
T ss_dssp             EEEEEE--CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSS
T ss_pred             eEEEEC--CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccc
Confidence            344444  6999999999999999999997 8999999998764332 22334568999999999999999999999999


Q ss_pred             ceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCcee
Q 005656          115 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI  194 (685)
Q Consensus       115 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  194 (685)
                      .|++||+..........                                                               
T Consensus       120 ~i~iwd~~~~~~~~~~~---------------------------------------------------------------  136 (337)
T d1gxra_         120 TLSIWDLAAPTPRIKAE---------------------------------------------------------------  136 (337)
T ss_dssp             EEEEEECCCC--EEEEE---------------------------------------------------------------
T ss_pred             ccccccccccccccccc---------------------------------------------------------------
Confidence            99999986543211110                                                               


Q ss_pred             ecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCC
Q 005656          195 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG  274 (685)
Q Consensus       195 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg  274 (685)
                         ...+...+.+++++|++.++++++.++.|.+|++.++.......        .|...|.+++|++++..+++++.||
T Consensus       137 ---~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~--------~~~~~v~~l~~s~~~~~~~~~~~d~  205 (337)
T d1gxra_         137 ---LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ--------GHTDGASCIDISNDGTKLWTGGLDN  205 (337)
T ss_dssp             ---EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC--------CCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ---cccccccccccccccccccccccccccccccccccccccccccc--------ccccccccccccccccccccccccc
Confidence               01566789999999999999999999999999999987766553        8999999999999999999999999


Q ss_pred             eEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 005656          275 DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG  354 (685)
Q Consensus       275 ~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s  354 (685)
                      .+++||+++++.+..+.+...+.+++|+|+++++++|+.|+.|++||+.+++.. ....|...|++++|+|+|++|++++
T Consensus       206 ~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s  284 (337)
T d1gxra_         206 TVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTG  284 (337)
T ss_dssp             EEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             cccccccccceeecccccccceEEEEEcccccccceeccccccccccccccccc-cccccccccceEEECCCCCEEEEEe
Confidence            999999999999999999999999999999999999999999999999988865 4567999999999999999999999


Q ss_pred             CCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656          355 MDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       355 ~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~  406 (685)
                      .||.|++||+.+++.+..+.+...|++++|+|++++|++++.|+ .|+||+.
T Consensus       285 ~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~-~I~vWdl  335 (337)
T d1gxra_         285 KDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDK-KATVYEV  335 (337)
T ss_dssp             TTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTS-CEEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEEEeCCC-eEEEEEE
Confidence            99999999999999999998888899999999999999999887 9999984

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.3e-41  Score=336.29  Aligned_cols=301  Identities=20%  Similarity=0.336  Sum_probs=265.0

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG   80 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~   80 (685)
                      |+++|++|+|+|+|+ +||||+.||+|+|||+.+++++..+. +|.+.|.+++|+|++.++++++.++.+.+|+....  
T Consensus        16 H~~~I~~l~~sp~~~-~l~s~s~Dg~i~iWd~~~~~~~~~~~-~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   91 (317)
T d1vyhc1          16 HRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTLK-GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF--   91 (317)
T ss_dssp             CSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEEEC-CCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS--
T ss_pred             CCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCEEEEEe-CCCCcEEEEeeeccccccccccccccccccccccc--
Confidence            899999999999998 99999999999999999999999998 99999999999999999999999999999987766  


Q ss_pred             CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656           81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  160 (685)
Q Consensus        81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (685)
                        .......+|...+.++.|+|++..+++++.|+.+++||+.+++....+.                             
T Consensus        92 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-----------------------------  140 (317)
T d1vyhc1          92 --ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT-----------------------------  140 (317)
T ss_dssp             --CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE-----------------------------
T ss_pred             --ccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEc-----------------------------
Confidence              5666778899999999999999999999999999999998876655443                             


Q ss_pred             cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656          161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  240 (685)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~  240 (685)
                                                             .+...+.+++++++++++++|+.||.|++|++.++.....+
T Consensus       141 ---------------------------------------~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~  181 (317)
T d1vyhc1         141 ---------------------------------------GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL  181 (317)
T ss_dssp             ---------------------------------------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             ---------------------------------------cCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEE
Confidence                                                   56778999999999999999999999999999998887766


Q ss_pred             ccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEE
Q 005656          241 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLF  320 (685)
Q Consensus       241 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~  320 (685)
                      .        .|...+.++.++|++.........                     ..........+.++++++.|+.|++|
T Consensus       182 ~--------~~~~~i~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~d~~i~~~  232 (317)
T d1vyhc1         182 R--------EHRHVVECISWAPESSYSSISEAT---------------------GSETKKSGKPGPFLLSGSRDKTIKMW  232 (317)
T ss_dssp             C--------CCSSCEEEEEECCSCGGGGGGGCC---------------------SCC-------CCEEEEEETTSEEEEE
T ss_pred             e--------cCCCCceEEEEeeccccceeeccc---------------------cceeeeeccCCceeEeccCCCEEEEE
Confidence            4        788999999999876543322211                     12223334567889999999999999


Q ss_pred             EcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeecc-ceEEEEEcCCCCeEEEEEeCCC
Q 005656          321 DVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQN  399 (685)
Q Consensus       321 d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~-~v~~v~~spdg~~Lat~~~d~~  399 (685)
                      |+.+++++.++.+|...|++++|+|++++|++|+.||.|++||+.+++++..+..|. +|++++|+|++++|++++.|+ 
T Consensus       233 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg-  311 (317)
T d1vyhc1         233 DVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQ-  311 (317)
T ss_dssp             ETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTS-
T ss_pred             ECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC-
Confidence            999999999999999999999999999999999999999999999999999998655 599999999999999999997 


Q ss_pred             eEEEEE
Q 005656          400 GVYLWV  405 (685)
Q Consensus       400 ~I~lW~  405 (685)
                      .|+||+
T Consensus       312 ~i~iWd  317 (317)
T d1vyhc1         312 TVKVWE  317 (317)
T ss_dssp             EEEEEC
T ss_pred             eEEEeC
Confidence            999995

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.9e-40  Score=342.36  Aligned_cols=289  Identities=17%  Similarity=0.317  Sum_probs=241.6

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEee-----------------cccccCeeEEEEeCCCcEEEE
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR-----------------EAHDNAIISLHFFANEPVLMS   63 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~-----------------~~h~~~V~~l~~sp~~~~l~s   63 (685)
                      |++.|+||+|+|||+ +||+|+ ||.|+|||+.+++.+..+.                 .+|...|++++|+|++++|++
T Consensus        61 H~~~V~~l~fs~dg~-~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s  138 (388)
T d1erja_          61 HTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  138 (388)
T ss_dssp             CSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCcEEEEEECCCCC-EEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCccee
Confidence            889999999999999 999987 8999999999988776654                 246778999999999999999


Q ss_pred             ecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcc
Q 005656           64 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLK  143 (685)
Q Consensus        64 ~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  143 (685)
                      |+.||.|++|+...+    +.+....+|...|.++.|++++..+++++.++.+++||..+........            
T Consensus       139 ~~~dg~v~i~~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~------------  202 (388)
T d1erja_         139 GAEDRLIRIWDIENR----KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS------------  202 (388)
T ss_dssp             EETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE------------
T ss_pred             ccccccccccccccc----ccccccccccccccccccccccccccccccceeeeeeeccccccccccc------------
Confidence            999999999998876    7777888999999999999999999999999999999987665443321            


Q ss_pred             ccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEE-ccCCCEEEEEec
Q 005656          144 MKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTI-SACGNFAVLGTA  222 (685)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~g~~l~~g~~  222 (685)
                                                                              . .....++.+ .++++++++|+.
T Consensus       203 --------------------------------------------------------~-~~~~~~~~~~~~~~~~l~~~~~  225 (388)
T d1erja_         203 --------------------------------------------------------I-EDGVTTVAVSPGDGKYIAAGSL  225 (388)
T ss_dssp             --------------------------------------------------------C-SSCEEEEEECSTTCCEEEEEET
T ss_pred             --------------------------------------------------------c-ccccccccccCCCCCeEEEEcC
Confidence                                                                    1 233444444 458899999999


Q ss_pred             CCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEE-------------E
Q 005656          223 GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS-------------R  289 (685)
Q Consensus       223 dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-------------~  289 (685)
                      ||.|++|+..++.....+.... ....+|.+.|.+++|+|++++|++++.||.|++||+.++....             .
T Consensus       226 d~~i~i~~~~~~~~~~~~~~~~-~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  304 (388)
T d1erja_         226 DRAVRVWDSETGFLVERLDSEN-ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY  304 (388)
T ss_dssp             TSCEEEEETTTCCEEEEEC-------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEE
T ss_pred             CCeEEEeecccCccceeecccc-ccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeec
Confidence            9999999999988766553221 1233789999999999999999999999999999998654321             2


Q ss_pred             eecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEE------cCCCCEEEEEeCCCcEEEEE
Q 005656          290 WEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCF------SEDGKWLLSSGMDGSLRIWD  363 (685)
Q Consensus       290 ~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~------spdg~~l~s~s~Dg~I~iwd  363 (685)
                      ..+...+.+++|+|++++|++|+.||.|++||+.+++++.++.+|.+.|+++++      +|++++|+||+.||+|+||+
T Consensus       305 ~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~  384 (388)
T d1erja_         305 IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK  384 (388)
T ss_dssp             ECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEE
T ss_pred             ccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEe
Confidence            233478999999999999999999999999999999999999999999999975      67899999999999999999


Q ss_pred             cC
Q 005656          364 VI  365 (685)
Q Consensus       364 ~~  365 (685)
                      ++
T Consensus       385 ~~  386 (388)
T d1erja_         385 YK  386 (388)
T ss_dssp             EE
T ss_pred             ee
Confidence            74

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.5e-38  Score=323.83  Aligned_cols=284  Identities=17%  Similarity=0.353  Sum_probs=252.6

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG   80 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~   80 (685)
                      |+++|++|+|+|+|+ +||||+.||.|+|||+.+++.+..+. +|..+|.+++|+|+++++++++.|+.+++|+......
T Consensus        54 H~~~I~~l~~s~~~~-~l~sgs~Dg~v~iWd~~~~~~~~~~~-~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~  131 (340)
T d1tbga_          54 HLAKIYAMHWGTDSR-LLVSASQDGKLIIWDSYTTNKVHAIP-LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG  131 (340)
T ss_dssp             CSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTTEEEEEEE-CSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCS
T ss_pred             CCCCEEEEEECCCCC-EEEEEECCCceeeeecccceeEEEEe-cccccEEeeEeeccceeeeeecccceeeccccccccc
Confidence            899999999999999 99999999999999999999999998 8999999999999999999999999999999887766


Q ss_pred             CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656           81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  160 (685)
Q Consensus        81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (685)
                      .......+.+|........... +..+.....|+....+............                             
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------  181 (340)
T d1tbga_         132 NVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFT-----------------------------  181 (340)
T ss_dssp             CCCEEEEECCCSSCEEEEEEEE-TTEEEEEETTTEEEEEETTTTEEEEEEE-----------------------------
T ss_pred             ccccceeccccccccccccccc-cccccccccccccccccccccccccccc-----------------------------
Confidence            6667777778887766655554 4577788888888888765543322221                             


Q ss_pred             cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656          161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  240 (685)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~  240 (685)
                                                             .....+....+.+.+.++++|+.++.|++||++++.....+
T Consensus       182 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~  222 (340)
T d1tbga_         182 ---------------------------------------GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF  222 (340)
T ss_dssp             ---------------------------------------CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEE
T ss_pred             ---------------------------------------ccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEE
Confidence                                                   44667888999999999999999999999999999887776


Q ss_pred             ccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec---CCceeEEEEeecCCEEEEEeCCCeE
Q 005656          241 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV---GCSLVKIVYHRVNGLLATVADDLVI  317 (685)
Q Consensus       241 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~I  317 (685)
                      .        +|...|++++|+|++++|++|+.||.|++||+........+..   ...+.+++|+|++++|++|+.||.|
T Consensus       223 ~--------~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i  294 (340)
T d1tbga_         223 T--------GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNC  294 (340)
T ss_dssp             C--------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCE
T ss_pred             e--------CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEE
Confidence            5        8999999999999999999999999999999999887776643   3679999999999999999999999


Q ss_pred             EEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005656          318 RLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD  363 (685)
Q Consensus       318 ~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd  363 (685)
                      ++||+.+++++..+.+|.++|++++|+|++++|++|+.||+|+|||
T Consensus       295 ~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         295 NVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            9999999999999999999999999999999999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.4e-39  Score=323.53  Aligned_cols=282  Identities=14%  Similarity=0.181  Sum_probs=241.5

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG   80 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~   80 (685)
                      +++.+.+++++|+|+ .||.++ ++.|.+||+.++.....+. +|.+.|++++|+|+|++|++|+.||+|++|++.....
T Consensus        16 ~r~~~~~~a~~~~g~-~l~~~~-~~~v~i~~~~~~~~~~~~~-~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~   92 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGD-KIQYCN-GTSVYTVPVGSLTDTEIYT-EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH   92 (311)
T ss_dssp             CTTCCCCCEECTTSS-EEEEEE-TTEEEEEETTCSSCCEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC
T ss_pred             CCCCeEEEEEcCCCC-EEEEEe-CCEEEEEECCCCceeEEEc-CCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccc
Confidence            356677899999999 777765 5679999999999888887 9999999999999999999999999999999887643


Q ss_pred             CCceeEecccCCCCCeEEEEecCCCEEEEEeC--CCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeee
Q 005656           81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ--DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD  158 (685)
Q Consensus        81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (685)
                        .....+.+|..+|.+++|+|++++|++++.  ++.+++|++.+++....+.                           
T Consensus        93 --~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~---------------------------  143 (311)
T d1nr0a1          93 --ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLT---------------------------  143 (311)
T ss_dssp             --CEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCC---------------------------
T ss_pred             --ccccccccccCcccccccccccccccccccccccccccccccccccccccc---------------------------
Confidence              233456789999999999999999999986  4568999987665433321                           


Q ss_pred             cccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCE-EEEEecCCcEEEEECCCCccc
Q 005656          159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNF-AVLGTAGGWIERFNLQSGISR  237 (685)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~g~~dg~i~~~d~~~~~~~  237 (685)
                                                               .|...|.+++|+|++++ +++|+.||.|++||++++...
T Consensus       144 -----------------------------------------~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~  182 (311)
T d1nr0a1         144 -----------------------------------------GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK  182 (311)
T ss_dssp             -----------------------------------------CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEE
T ss_pred             -----------------------------------------ccccccccccccccceeeecccccccccccccccccccc
Confidence                                                     66788999999999985 778999999999999998877


Q ss_pred             cccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEee--------cCCceeEEEEeecCCEEE
Q 005656          238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE--------VGCSLVKIVYHRVNGLLA  309 (685)
Q Consensus       238 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~  309 (685)
                      ..+.        .|...|+++.|+|+++++++++.||.|++||..++.....+.        +...|.+++|+|++++|+
T Consensus       183 ~~~~--------~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~  254 (311)
T d1nr0a1         183 STFG--------EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA  254 (311)
T ss_dssp             EEEC--------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEE
T ss_pred             cccc--------cccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEE
Confidence            6654        899999999999999999999999999999999988777664        236799999999999999


Q ss_pred             EEeCCCeEEEEEcCCCeeEEEEecCCC---CeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005656          310 TVADDLVIRLFDVVALRMVRKFEGHTD---RITDFCFSEDGKWLLSSGMDGSLRIWDVI  365 (685)
Q Consensus       310 ~~~~dg~I~i~d~~~~~~~~~~~~h~~---~I~~l~~spdg~~l~s~s~Dg~I~iwd~~  365 (685)
                      +|+.||.|+|||+.++++++++..|..   .+.++.|  ++++|++++.||.|++||.+
T Consensus       255 tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~--~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         255 SASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETT
T ss_pred             EEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEe--cCCEEEEEECCCEEEEEeCC
Confidence            999999999999999999999987654   3444555  56679999999999999964

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.4e-38  Score=329.43  Aligned_cols=311  Identities=14%  Similarity=0.229  Sum_probs=251.7

Q ss_pred             EEEEEeCCCcEEEEeCCCCeee----EEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCC----------
Q 005656           17 LLASGASSGVISIWNLEKRRLQ----SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP----------   82 (685)
Q Consensus        17 ~latg~~dg~I~vwd~~~~~~~----~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~----------   82 (685)
                      ....+..++.+.+|+....+..    .... +|.+.|+|++|+|||++|++|+ |++|++|++..+....          
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~  107 (388)
T d1erja_          30 DALKKQTNDYYILYNPALPREIDVELHKSL-DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANK  107 (388)
T ss_dssp             TTSEEECSSCEEEECTTSCCCEEEEEEEEE-ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC------
T ss_pred             cccccCCCCcEEEeCCCCCcceeeeeEeeC-CCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccc
Confidence            3456778899999997654322    2222 6999999999999999999986 8999999987652100          


Q ss_pred             ----ceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeee
Q 005656           83 ----RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD  158 (685)
Q Consensus        83 ----~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (685)
                          .......+|...|++++|+|+|++|++|+.||.|++|+...++......                           
T Consensus       108 ~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~---------------------------  160 (388)
T d1erja_         108 DPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ---------------------------  160 (388)
T ss_dssp             -----------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC---------------------------
T ss_pred             cccccccccccCCCCCEEEEEECCCCCcceecccccccccccccccccccccc---------------------------
Confidence                0011223577789999999999999999999999999987776544432                           


Q ss_pred             cccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccc
Q 005656          159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG  238 (685)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~  238 (685)
                                                               .+...|.++++++++..+++|+.+|.+++||+.+.....
T Consensus       161 -----------------------------------------~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~  199 (388)
T d1erja_         161 -----------------------------------------GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSL  199 (388)
T ss_dssp             -----------------------------------------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             -----------------------------------------cccccccccccccccccccccccceeeeeeecccccccc
Confidence                                                     677889999999999999999999999999999887665


Q ss_pred             ccccccccccCCCCcCEEEEEE-cCCCCEEEEEECCCeEEEEECCCCceEEEee--------cCCceeEEEEeecCCEEE
Q 005656          239 SYLDMSERSNYAHNGEVVGVAC-DSTNTLMISAGYHGDIKVWDFKGRDLKSRWE--------VGCSLVKIVYHRVNGLLA  309 (685)
Q Consensus       239 ~~~~~~~~~~~~h~~~v~~l~~-~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~  309 (685)
                      ...        .+ ....++.+ .+++.+|++++.||.|++||..++.....+.        +...|.+++|+|++++|+
T Consensus       200 ~~~--------~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~  270 (388)
T d1erja_         200 TLS--------IE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV  270 (388)
T ss_dssp             EEE--------CS-SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEE
T ss_pred             ccc--------cc-cccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEE
Confidence            542        34 44445555 4578999999999999999999988776653        246799999999999999


Q ss_pred             EEeCCCeEEEEEcCCCe------------eEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeecc
Q 005656          310 TVADDLVIRLFDVVALR------------MVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV  377 (685)
Q Consensus       310 ~~~~dg~I~i~d~~~~~------------~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~  377 (685)
                      +|+.|+.|++||+.++.            .......|...|++++|+|+|++|++|+.||.|++||+.+++++..+..|.
T Consensus       271 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~  350 (388)
T d1erja_         271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHR  350 (388)
T ss_dssp             EEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred             EEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCC
Confidence            99999999999997643            344566789999999999999999999999999999999999999998765


Q ss_pred             c-eEEEE------EcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          378 S-ITALS------LSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       378 ~-v~~v~------~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                      . |++++      |+|++.+||+|+.|+ .|+||+.+
T Consensus       351 ~~V~~~~~~~~~~~spd~~~l~s~s~Dg-~I~iW~~~  386 (388)
T d1erja_         351 NSVISVAVANGSSLGPEYNVFATGSGDC-KARIWKYK  386 (388)
T ss_dssp             SCEEEEEECSSCTTCTTCEEEEEEETTS-EEEEEEEE
T ss_pred             CCEEEEEEecCcccCCCCCEEEEEeCCC-EEEEEeee
Confidence            5 88887      467999999999997 99999865

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.1e-38  Score=319.21  Aligned_cols=286  Identities=15%  Similarity=0.171  Sum_probs=243.8

Q ss_pred             eecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEE
Q 005656           41 IREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS  120 (685)
Q Consensus        41 ~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd  120 (685)
                      +...+.+.+..++++|+|+.|+.++ ++.|.+|+++..    .....+.+|...|++++|+|+|++|++|+.||+|++||
T Consensus        12 ~p~~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~----~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd   86 (311)
T d1nr0a1          12 LPRTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSL----TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWD   86 (311)
T ss_dssp             CCCCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCS----SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             CCCCCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCC----ceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeee
Confidence            3335666778899999999999885 567999999876    56666789999999999999999999999999999999


Q ss_pred             eecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCC
Q 005656          121 VIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE  200 (685)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  200 (685)
                      +..+.......                                                                  ...
T Consensus        87 ~~~~~~~~~~~------------------------------------------------------------------~~~  100 (311)
T d1nr0a1          87 TTQTTHILKTT------------------------------------------------------------------IPV  100 (311)
T ss_dssp             SSSTTCCEEEE------------------------------------------------------------------EEC
T ss_pred             eeccccccccc------------------------------------------------------------------ccc
Confidence            98765432211                                                                  015


Q ss_pred             CCCCeEEEEEccCCCEEEEEecC--CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCE-EEEEECCCeEE
Q 005656          201 NPTAVKACTISACGNFAVLGTAG--GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTL-MISAGYHGDIK  277 (685)
Q Consensus       201 ~~~~v~~~~~s~~g~~l~~g~~d--g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-l~s~s~dg~i~  277 (685)
                      +...|.+++|+|+++++++++.+  ..+++|++++++....+.        +|...|++++|+|++.+ +++|+.||.|+
T Consensus       101 ~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~--------~h~~~v~~v~~~~~~~~~l~sgs~d~~i~  172 (311)
T d1nr0a1         101 FSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLT--------GQARAMNSVDFKPSRPFRIISGSDDNTVA  172 (311)
T ss_dssp             SSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCC--------CCSSCEEEEEECSSSSCEEEEEETTSCEE
T ss_pred             ccCcccccccccccccccccccccccccccccccccccccccc--------ccccccccccccccceeeecccccccccc
Confidence            67889999999999999998864  569999999988776654        89999999999999875 78899999999


Q ss_pred             EEECCCCceEEEeec-CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEe-------cCCCCeEEEEEcCCCCE
Q 005656          278 VWDFKGRDLKSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE-------GHTDRITDFCFSEDGKW  349 (685)
Q Consensus       278 iwd~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~-------~h~~~I~~l~~spdg~~  349 (685)
                      +||+++++....+.. ..+|.++.++|+++++++++.|+.|++||..+++.+..+.       +|.+.|++++|+|++++
T Consensus       173 i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~  252 (311)
T d1nr0a1         173 IFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK  252 (311)
T ss_dssp             EEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSE
T ss_pred             cccccccccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCE
Confidence            999999988887765 4889999999999999999999999999999998887764       58899999999999999


Q ss_pred             EEEEeCCCcEEEEEcCCCceeeEEeeccc--eEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656          350 LLSSGMDGSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       350 l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~--v~~v~~spdg~~Lat~~~d~~~I~lW~~  406 (685)
                      |++|+.||+|+|||+.+++++..+..+..  ...+.+.+++.+|++++.|| .|++|+.
T Consensus       253 l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG-~i~~wd~  310 (311)
T d1nr0a1         253 IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG-FINFVNP  310 (311)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTC-CEEEEET
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCC-EEEEEeC
Confidence            99999999999999999999999876544  33344455667899999997 9999984

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.4e-38  Score=326.58  Aligned_cols=296  Identities=13%  Similarity=0.145  Sum_probs=237.7

Q ss_pred             CCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe--eeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCC
Q 005656            2 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR--LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD   79 (685)
Q Consensus         2 ~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~   79 (685)
                      ..||+|++|+|||+ +||+|+.||.|+|||+.+++  .+..+. +|.++|.+++|+|++++|++++.|++|++|++....
T Consensus         7 ~~pIt~~~~s~dg~-~la~~~~~~~i~iw~~~~~~~~~~~~l~-gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~   84 (371)
T d1k8kc_           7 VEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHELK-EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT   84 (371)
T ss_dssp             SSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEEEEE-CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred             CCCeEEEEECCCCC-EEEEEeCCCEEEEEECCCCCEEEEEEec-CCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccc
Confidence            47899999999999 99999999999999998775  566677 999999999999999999999999999999998653


Q ss_pred             CCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeec
Q 005656           80 GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC  159 (685)
Q Consensus        80 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (685)
                      .  .....+.+|...|++++|+|++++|++++.|+++++|++..........                            
T Consensus        85 ~--~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~----------------------------  134 (371)
T d1k8kc_          85 W--KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK----------------------------  134 (371)
T ss_dssp             E--EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE----------------------------
T ss_pred             c--ccccccccccccccccccccccccceeecccCcceeeeeeccccccccc----------------------------
Confidence            2  3445567899999999999999999999999999999987654322221                            


Q ss_pred             ccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccc
Q 005656          160 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGS  239 (685)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~  239 (685)
                                                          .....+...|.+++|+|+++++++|+.||.|++|++........
T Consensus       135 ------------------------------------~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~  178 (371)
T d1k8kc_         135 ------------------------------------HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEER  178 (371)
T ss_dssp             ------------------------------------EECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCC
T ss_pred             ------------------------------------ccccccccccccccccccccceeccccCcEEEEEeeccCccccc
Confidence                                                01115678899999999999999999999999999876543221


Q ss_pred             ccc----------ccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecCCEE
Q 005656          240 YLD----------MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLL  308 (685)
Q Consensus       240 ~~~----------~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l  308 (685)
                      ...          ........|...|.+++|+|+++++++++.||.|++||+.++..+..+..+ .+|.+++|+|++.+|
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~l  258 (371)
T d1k8kc_         179 PAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLV  258 (371)
T ss_dssp             CCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEE
T ss_pred             cccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEE
Confidence            110          011123478899999999999999999999999999999999888887765 789999999999888


Q ss_pred             EEEeCCCeEEEEEcC--CCeeEEE---------------------------------------EecCCCCeEEEEEcCCC
Q 005656          309 ATVADDLVIRLFDVV--ALRMVRK---------------------------------------FEGHTDRITDFCFSEDG  347 (685)
Q Consensus       309 ~~~~~dg~I~i~d~~--~~~~~~~---------------------------------------~~~h~~~I~~l~~spdg  347 (685)
                      ++|. |+.+++|...  .+.....                                       ...|.+.|+++++.+.+
T Consensus       259 a~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~  337 (371)
T d1k8kc_         259 AAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGG  337 (371)
T ss_dssp             EEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEEST
T ss_pred             EEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCC
Confidence            8765 6666665433  2221100                                       01388899999998754


Q ss_pred             ----CEEEEEeCCCcEEEEEcCC
Q 005656          348 ----KWLLSSGMDGSLRIWDVIL  366 (685)
Q Consensus       348 ----~~l~s~s~Dg~I~iwd~~~  366 (685)
                          ..++|+|.||.|++||+.+
T Consensus       338 ~~~~~~~~T~g~Dg~v~iW~~~~  360 (371)
T d1k8kc_         338 KAKCSQFCTTGMDGGMSIWDVRS  360 (371)
T ss_dssp             TTSCSEEEEEETTSEEEEEEHHH
T ss_pred             CcceEEEEEEcCCCeEEEEeCCc
Confidence                3689999999999999865

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.3e-36  Score=309.34  Aligned_cols=291  Identities=19%  Similarity=0.308  Sum_probs=247.6

Q ss_pred             eeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCc
Q 005656           36 RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA  115 (685)
Q Consensus        36 ~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~  115 (685)
                      +..++++ ||.++|++++|+|++++|+||+.||+|++||+.++    +.+..+.+|..+|.+++|+|+++++++++.|+.
T Consensus        46 ~~~~tL~-GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~----~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~  120 (340)
T d1tbga_          46 RTRRTLR-GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTT----NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI  120 (340)
T ss_dssp             CEEEEEC-CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTT----EEEEEEECSCSCEEEEEECTTSSEEEEEETTCC
T ss_pred             eeeEEEC-CCCCCEEEEEECCCCCEEEEEECCCceeeeecccc----eeEEEEecccccEEeeEeeccceeeeeecccce
Confidence            4567787 99999999999999999999999999999999877    778888899999999999999999999999999


Q ss_pred             eEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceee
Q 005656          116 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL  195 (685)
Q Consensus       116 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  195 (685)
                      +++|+............                                                               
T Consensus       121 i~~~~~~~~~~~~~~~~---------------------------------------------------------------  137 (340)
T d1tbga_         121 CSIYNLKTREGNVRVSR---------------------------------------------------------------  137 (340)
T ss_dssp             EEEEESSSSCSCCCEEE---------------------------------------------------------------
T ss_pred             eecccccccccccccce---------------------------------------------------------------
Confidence            99999765432211100                                                               


Q ss_pred             cCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCe
Q 005656          196 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD  275 (685)
Q Consensus       196 ~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~  275 (685)
                       ....+.. .........+..+..+..++....+............        .+...+....+.+.+.++++++.|+.
T Consensus       138 -~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~d~~  207 (340)
T d1tbga_         138 -ELAGHTG-YLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT--------GHTGDVMSLSLAPDTRLFVSGACDAS  207 (340)
T ss_dssp             -EECCCSS-CEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEE--------CCSSCEEEEEECTTSSEEEEEETTTE
T ss_pred             -ecccccc-ccccccccccccccccccccccccccccccccccccc--------ccceeEeeeccccccceeEEeecCce
Confidence             0002222 3333444456677888888888888887766554443        67788999999999999999999999


Q ss_pred             EEEEECCCCceEEEeec-CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEe--cCCCCeEEEEEcCCCCEEEE
Q 005656          276 IKVWDFKGRDLKSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE--GHTDRITDFCFSEDGKWLLS  352 (685)
Q Consensus       276 i~iwd~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~--~h~~~I~~l~~spdg~~l~s  352 (685)
                      |++||+++++.+..+.. ...|.+++|+|++++|++|+.|+.|++||+.....+..+.  .|...|++++|+|++++|++
T Consensus       208 v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  287 (340)
T d1tbga_         208 AKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA  287 (340)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEE
T ss_pred             EEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEE
Confidence            99999999999888775 4889999999999999999999999999999998887764  46677999999999999999


Q ss_pred             EeCCCcEEEEEcCCCceeeEEeecc-ceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656          353 SGMDGSLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       353 ~s~Dg~I~iwd~~~~~~i~~~~~~~-~v~~v~~spdg~~Lat~~~d~~~I~lW~  405 (685)
                      |+.||.|++||+.+++++..+..|. +|++++|+|++++|++|+.|+ .|+||+
T Consensus       288 g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg-~v~iWd  340 (340)
T d1tbga_         288 GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS-FLKIWN  340 (340)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTS-CEEEEC
T ss_pred             EECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCC-EEEEeC
Confidence            9999999999999999999998654 599999999999999999997 899996

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.8e-37  Score=306.97  Aligned_cols=281  Identities=16%  Similarity=0.213  Sum_probs=225.7

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG   80 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~   80 (685)
                      |+++|++++|+|||+ +||||+.||.|++||+.+++....+..+|...|++++|+|++.+ ++++.|+.+++|+......
T Consensus        11 H~~~V~~l~~s~dg~-~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~~~~~~~~   88 (299)
T d1nr0a2          11 HNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKVVPAGGSGV   88 (299)
T ss_dssp             CSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEEECSSSSSS
T ss_pred             CCCCcEEEEECCCCC-EEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee-ecccceeeEEEeccCCccc
Confidence            899999999999999 99999999999999999999998887689999999999999975 4566799999998765422


Q ss_pred             CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656           81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  160 (685)
Q Consensus        81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (685)
                      . ........|...+.+++|+|+++.+++++ ++.+++|+.....   ..                              
T Consensus        89 ~-~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~~~---~~------------------------------  133 (299)
T d1nr0a2          89 D-SSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKLT---EV------------------------------  133 (299)
T ss_dssp             C-TTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTEEE---EE------------------------------
T ss_pred             c-ccccccccccccccccccccccccccccc-ccccccccccccc---cc------------------------------
Confidence            1 12222346778899999999998776655 6789999842211   00                              


Q ss_pred             cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656          161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  240 (685)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~  240 (685)
                                                             .....+.+++++|+++++++|+.+|.|++||+.++......
T Consensus       134 ---------------------------------------~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~  174 (299)
T d1nr0a2         134 ---------------------------------------PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVK  174 (299)
T ss_dssp             ---------------------------------------ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEE
T ss_pred             ---------------------------------------ccccccccccccccccccccccccccccccccccccccccc
Confidence                                                   12345788999999999999999999999999887654332


Q ss_pred             ccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEe---e-cCCceeEEEEeecCCEEEEEeCCCe
Q 005656          241 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRW---E-VGCSLVKIVYHRVNGLLATVADDLV  316 (685)
Q Consensus       241 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~-~~~~i~~~~~~~~~~~l~~~~~dg~  316 (685)
                      .       ..|...|++++|+|+++++++++.||.|++||+.++......   . +..+|.+++|+|++.+|++|+.||.
T Consensus       175 ~-------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~  247 (299)
T d1nr0a2         175 T-------IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNS  247 (299)
T ss_dssp             E-------EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             c-------ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCE
Confidence            1       278999999999999999999999999999999877654432   2 3478999999999999999999999


Q ss_pred             EEEEEcCCCeeE--EEEecC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005656          317 IRLFDVVALRMV--RKFEGH-TDRITDFCFSEDGKWLLSSGMDGSLRIWDVI  365 (685)
Q Consensus       317 I~i~d~~~~~~~--~~~~~h-~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~  365 (685)
                      |++||+.++...  .....| ...|.++.| +++++|++|+.||+|++||++
T Consensus       248 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         248 VIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             EEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred             EEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence            999999876433  333334 445666654 567899999999999999985

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.4e-36  Score=314.35  Aligned_cols=292  Identities=10%  Similarity=0.078  Sum_probs=234.3

Q ss_pred             cccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecC
Q 005656           45 HDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQD  124 (685)
Q Consensus        45 h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~  124 (685)
                      +..+|+|++|+|++++||+|+.|+.|++|+.+.+  ....+..+.+|.++|.+++|+|++++|++|+.|++|++||+.++
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~--~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~   83 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGN--KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR   83 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETT--EEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCC--CEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccc
Confidence            4578999999999999999999999999998764  22456777899999999999999999999999999999999866


Q ss_pred             ceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCC
Q 005656          125 QQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTA  204 (685)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  204 (685)
                      .....+.                                                                  ...+...
T Consensus        84 ~~~~~~~------------------------------------------------------------------~~~~~~~   97 (371)
T d1k8kc_          84 TWKPTLV------------------------------------------------------------------ILRINRA   97 (371)
T ss_dssp             EEEEEEE------------------------------------------------------------------CCCCSSC
T ss_pred             ccccccc------------------------------------------------------------------ccccccc
Confidence            5433321                                                                  1155678


Q ss_pred             eEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 005656          205 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR  284 (685)
Q Consensus       205 v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~  284 (685)
                      +.+++|+|+++++++|+.++.+++|++...........    ....|...|.+++|+|++++|++|+.||+|++|+....
T Consensus        98 v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~----~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~  173 (371)
T d1k8kc_          98 ARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH----IKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIK  173 (371)
T ss_dssp             EEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEE----ECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCT
T ss_pred             ccccccccccccceeecccCcceeeeeecccccccccc----cccccccccccccccccccceeccccCcEEEEEeeccC
Confidence            99999999999999999999999999876654322211    22378999999999999999999999999999998643


Q ss_pred             c------------------eEEEe-ecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcC
Q 005656          285 D------------------LKSRW-EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE  345 (685)
Q Consensus       285 ~------------------~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp  345 (685)
                      .                  ..... .+...+.+++|+|++++|++++.|+.|++||+.+++.+..+.+|..+|++++|+|
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~  253 (371)
T d1k8kc_         174 EVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFIT  253 (371)
T ss_dssp             TTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEE
T ss_pred             ccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeeeecC
Confidence            2                  22222 2346789999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeeEE------------------------------------------eeccceEEEE
Q 005656          346 DGKWLLSSGMDGSLRIWDVILARQIDAI------------------------------------------HVDVSITALS  383 (685)
Q Consensus       346 dg~~l~s~s~Dg~I~iwd~~~~~~i~~~------------------------------------------~~~~~v~~v~  383 (685)
                      |+++|++|+ |+.+++|..........+                                          .+...|++++
T Consensus       254 d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~  332 (371)
T d1k8kc_         254 ESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQIS  332 (371)
T ss_dssp             TTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEE
T ss_pred             CCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEE
Confidence            998887655 777777654332110000                                          0233589999


Q ss_pred             EcCCC----CeEEEEEeCCCeEEEEEcCCCc
Q 005656          384 LSPNM----DVLATAHVDQNGVYLWVNRCMF  410 (685)
Q Consensus       384 ~spdg----~~Lat~~~d~~~I~lW~~~~~~  410 (685)
                      +.|.+    ..++|++.|| .|++|+.+...
T Consensus       333 ~~~~~~~~~~~~~T~g~Dg-~v~iW~~~~~~  362 (371)
T d1k8kc_         333 VLSGGKAKCSQFCTTGMDG-GMSIWDVRSLE  362 (371)
T ss_dssp             EEESTTTSCSEEEEEETTS-EEEEEEHHHHH
T ss_pred             EeCCCCcceEEEEEEcCCC-eEEEEeCCcCh
Confidence            98755    3588999997 99999976543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.4e-37  Score=311.92  Aligned_cols=334  Identities=17%  Similarity=0.272  Sum_probs=247.3

Q ss_pred             CCCcE-EEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCC
Q 005656            1 MRGAV-TALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD   79 (685)
Q Consensus         1 h~~~V-~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~   79 (685)
                      |++.| +|++|  +|+ +||||+.||+|+|||+.+++++..+. +|.++|++++|+|+ .+|++++.|++|++|++... 
T Consensus        11 H~~~vitc~~~--~~~-~l~tgs~Dg~i~vWd~~~~~~~~~l~-~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~-   84 (355)
T d1nexb2          11 HMTSVITCLQF--EDN-YVITGADDKMIRVYDSINKKFLLQLS-GHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKG-   84 (355)
T ss_dssp             CSSSCEEEEEE--ETT-EEEEEETTTEEEEEETTTTEEEEEEE-CCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTT-
T ss_pred             cCCCcEEEEEE--CCC-EEEEEeCCCeEEEEECCCCcEEEEEE-CCCCCEEEEEEcCC-CEEEEEeccccccccccccc-
Confidence            77765 77666  567 99999999999999999999999998 99999999999986 48999999999999998765 


Q ss_pred             CCCceeEecc--cCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeee
Q 005656           80 GDPRLLRFRS--GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF  157 (685)
Q Consensus        80 ~~~~~~~~~~--~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (685)
                         .......  .+........+.+++.++++++.|+.|++|++.+............                .+....
T Consensus        85 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~----------------~~~~~~  145 (355)
T d1nexb2          85 ---CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD----------------YPLVFH  145 (355)
T ss_dssp             ---EEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------C----------------CCEEES
T ss_pred             ---ccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccce----------------ecccee
Confidence               3333322  2333445567788899999999999999999987654433211000                000000


Q ss_pred             ecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccc
Q 005656          158 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR  237 (685)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~  237 (685)
                      ..     ......         +...               ..+...  ...+.+++++++++..++.|++||+.++...
T Consensus       146 ~~-----~~~~~~---------~~~~---------------~~~~~~--v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~  194 (355)
T d1nexb2         146 TP-----EENPYF---------VGVL---------------RGHMAS--VRTVSGHGNIVVSGSYDNTLIVWDVAQMKCL  194 (355)
T ss_dssp             CT-----TTCTTE---------EEEE---------------ECCSSC--EEEEEEETTEEEEEETTSCEEEEETTTTEEE
T ss_pred             cc-----ccccce---------eeee---------------eecccc--ccccccccceeeeecccceeeeeecccccce
Confidence            00     000000         0000               012222  3345678899999999999999999998876


Q ss_pred             cccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCe
Q 005656          238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLV  316 (685)
Q Consensus       238 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~  316 (685)
                      ....        ++...+.++.+++++..+++++.||.|++||+.++..+..+..+ ..|.++.++  +++|++|+.||.
T Consensus       195 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~  264 (355)
T d1nexb2         195 YILS--------GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGS  264 (355)
T ss_dssp             EEEC--------CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSE
T ss_pred             eeee--------ccccccccccccccceeeecccccceEEeeeccccccccccccccccccccccc--cceeeeeecccc
Confidence            6554        78889999999999999999999999999999999988887765 778888876  579999999999


Q ss_pred             EEEEEcCCCeeEEEEecCCCCeEEE-EEcCCCCEEEEEeCCCcEEEEEcCCCceeeE-Eeec-cceEEEEEcCCCCeEEE
Q 005656          317 IRLFDVVALRMVRKFEGHTDRITDF-CFSEDGKWLLSSGMDGSLRIWDVILARQIDA-IHVD-VSITALSLSPNMDVLAT  393 (685)
Q Consensus       317 I~i~d~~~~~~~~~~~~h~~~I~~l-~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~-~~~~-~~v~~v~~spdg~~Lat  393 (685)
                      |++||+.++...  +..|...+..+ .+++++++|++|+ ||.|++||+++++++.. +..+ .+|++++|+|+ .++++
T Consensus       265 i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~g~-d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~  340 (355)
T d1nexb2         265 IRGWDANDYSRK--FSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAA  340 (355)
T ss_dssp             EEEEETTTCCEE--EEEECTTCCCCCEEEECSSEEEEEE-TTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEE
T ss_pred             ccccccccccee--cccccCCceEEEEEcCCCCEEEEEe-CCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEE
Confidence            999999987644  45566666665 4567777776665 89999999999998854 3333 45999999987 46777


Q ss_pred             EEeCCCeEEEEE
Q 005656          394 AHVDQNGVYLWV  405 (685)
Q Consensus       394 ~~~d~~~I~lW~  405 (685)
                      ++.|| .++||.
T Consensus       341 ~s~dg-~~~l~~  351 (355)
T d1nexb2         341 VEKDG-QSFLEI  351 (355)
T ss_dssp             EESSS-CEEEEE
T ss_pred             EECCC-cEEEEE
Confidence            78787 777764

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.1e-36  Score=301.64  Aligned_cols=286  Identities=16%  Similarity=0.208  Sum_probs=228.2

Q ss_pred             CeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEec-ccCCCCCeEEEEecCCCEEEEEeCC
Q 005656           35 RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFR-SGHSAPPLCIRFYANGRHILSAGQD  113 (685)
Q Consensus        35 ~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~-~~h~~~v~~i~~~~~~~~l~s~s~d  113 (685)
                      |+..+.+. ||.++|++++|+|++++|+||+.||+|++||+.++    +....+ .+|...|++++|+|+|+ +++++.|
T Consensus         2 g~~~~~~~-GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~----~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d   75 (299)
T d1nr0a2           2 GSIDQVRY-GHNKAITALSSSADGKTLFSADAEGHINSWDISTG----ISNRVFPDVHATMITGIKTTSKGD-LFTVSWD   75 (299)
T ss_dssp             TEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC----CEEECSSCSCSSCEEEEEECTTSC-EEEEETT
T ss_pred             CccceEcC-CCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCC----cEEEEEcCCCCCcEEEEEeeccce-eecccce
Confidence            45667777 99999999999999999999999999999999876    555555 57999999999999986 5677889


Q ss_pred             CceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCce
Q 005656          114 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH  193 (685)
Q Consensus       114 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  193 (685)
                      +.+++|+...........                                                              
T Consensus        76 ~~v~~~~~~~~~~~~~~~--------------------------------------------------------------   93 (299)
T d1nr0a2          76 DHLKVVPAGGSGVDSSKA--------------------------------------------------------------   93 (299)
T ss_dssp             TEEEEECSSSSSSCTTSC--------------------------------------------------------------
T ss_pred             eeEEEeccCCcccccccc--------------------------------------------------------------
Confidence            999999875432110000                                                              


Q ss_pred             eecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC
Q 005656          194 ILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH  273 (685)
Q Consensus       194 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d  273 (685)
                         ....+...+.+++++++|+++++++ ++.+.+|+.......            .....+.+++|+|+++++++++.|
T Consensus        94 ---~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~~~~~------------~~~~~~~~~~~s~~~~~l~~g~~d  157 (299)
T d1nr0a2          94 ---VANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKLTEV------------PISYNSSCVALSNDKQFVAVGGQD  157 (299)
T ss_dssp             ---CEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTEEEEE------------ECSSCEEEEEECTTSCEEEEEETT
T ss_pred             ---ccccccccccccccccccccccccc-ccccccccccccccc------------cccccccccccccccccccccccc
Confidence               0003456788999999999777665 567999985432111            334567899999999999999999


Q ss_pred             CeEEEEECCCCceEE--EeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeE---EEEecCCCCeEEEEEcCCCC
Q 005656          274 GDIKVWDFKGRDLKS--RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMV---RKFEGHTDRITDFCFSEDGK  348 (685)
Q Consensus       274 g~i~iwd~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~---~~~~~h~~~I~~l~~spdg~  348 (685)
                      |.|++||+.+++...  ...+...|.+++|+|++++|++++.|+.|++||+.++...   ..+.+|...|++++|+|+++
T Consensus       158 g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~  237 (299)
T d1nr0a2         158 SKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV  237 (299)
T ss_dssp             SEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999998876543  4456689999999999999999999999999999887554   34567999999999999999


Q ss_pred             EEEEEeCCCcEEEEEcCCCceeeEEe---ecc-ceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656          349 WLLSSGMDGSLRIWDVILARQIDAIH---VDV-SITALSLSPNMDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       349 ~l~s~s~Dg~I~iwd~~~~~~i~~~~---~~~-~v~~v~~spdg~~Lat~~~d~~~I~lW~~  406 (685)
                      +|++|+.||.|++||+.++.....+.   ++. .+.++.| +++++|++++.|+ .|++|+.
T Consensus       238 ~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~-~i~iWdl  297 (299)
T d1nr0a2         238 RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDS-NIKFWNV  297 (299)
T ss_dssp             EEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTS-CEEEEEC
T ss_pred             ceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCC-EEEEEec
Confidence            99999999999999999876554443   222 3666654 6678999999887 9999986

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-34  Score=293.76  Aligned_cols=312  Identities=15%  Similarity=0.290  Sum_probs=249.6

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG   80 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~   80 (685)
                      |+++|.+ +++++|+ +||||+.||.|+|||+.+++++..+. +|.+.|.+++|+|+  +|++++.|+++++|+....  
T Consensus        15 H~~~V~s-~~~~~g~-~l~sgs~Dg~i~vWd~~~~~~~~~~~-~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~--   87 (342)
T d2ovrb2          15 HDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRTLV-GHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETG--   87 (342)
T ss_dssp             STTSCEE-EEEEETT-EEEEEETTSCEEEEETTTCCEEEECC-CCSSCEEEEEEETT--EEEEEETTSCEEEEETTTT--
T ss_pred             cCCceEE-EEEECCC-EEEEEeCCCeEEEEECCCCCEEEEEe-CCCCCEEEEEeCCC--ccccceecccccccccccc--
Confidence            8888865 3666788 99999999999999999999999998 99999999999975  9999999999999988765  


Q ss_pred             CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656           81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  160 (685)
Q Consensus        81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (685)
                        ........+...+....+  ....+..+..|+.+.+|+..+++....+..                            
T Consensus        88 --~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~----------------------------  135 (342)
T d2ovrb2          88 --ECIHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVLMG----------------------------  135 (342)
T ss_dssp             --EEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEESSSCCEEEEEEC----------------------------
T ss_pred             --cceecccccceeEeeeec--ccccccccccceeEEEeecccccceeeeec----------------------------
Confidence              444444445555554444  345788899999999999987765444321                            


Q ss_pred             cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656          161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  240 (685)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~  240 (685)
                                                                .........+....+++++.+|.|++||.........+
T Consensus       136 ------------------------------------------~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~  173 (342)
T d2ovrb2         136 ------------------------------------------HVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTL  173 (342)
T ss_dssp             ------------------------------------------CSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEE
T ss_pred             ------------------------------------------ccccceeeccccceeeeecCCCeEEEeecccceeeEEE
Confidence                                                      11112334456678899999999999999988777665


Q ss_pred             ccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEE
Q 005656          241 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRL  319 (685)
Q Consensus       241 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i  319 (685)
                      .        +|...+..+.+  ++.++++++.||.|++||+..++.+..+..+ ..+.++.  +++++|++|+.|+.|++
T Consensus       174 ~--------~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~s~d~~i~i  241 (342)
T d2ovrb2         174 Q--------GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME--LKDNILVSGNADSTVKI  241 (342)
T ss_dssp             C--------CCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEE--EETTEEEEEETTSCEEE
T ss_pred             c--------CcccccccccC--CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEe--cCCCEEEEEcCCCEEEE
Confidence            4        77777766655  5789999999999999999999988877765 5555554  45689999999999999


Q ss_pred             EEcCCCeeEEEEec---CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEee------ccceEEEEEcCCCCe
Q 005656          320 FDVVALRMVRKFEG---HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV------DVSITALSLSPNMDV  390 (685)
Q Consensus       320 ~d~~~~~~~~~~~~---h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~------~~~v~~v~~spdg~~  390 (685)
                      ||+...+....+.+   |...+.++.+  +++++++|+.||+|++||+.+++++..+..      ...|++++|+|++.+
T Consensus       242 wd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~  319 (342)
T d2ovrb2         242 WDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLV  319 (342)
T ss_dssp             EETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEE
T ss_pred             Eecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCE
Confidence            99999988888875   4556666666  567999999999999999999999988753      234999999999999


Q ss_pred             EEEEEeCCC---eEEEEEcC
Q 005656          391 LATAHVDQN---GVYLWVNR  407 (685)
Q Consensus       391 Lat~~~d~~---~I~lW~~~  407 (685)
                      ||+|+.||.   .|++|+..
T Consensus       320 la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         320 CAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             EEEECSSSSSCCEEEEEECC
T ss_pred             EEEEeCCCCCeeEEEEEeCC
Confidence            999998862   49999854

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.9e-33  Score=279.55  Aligned_cols=290  Identities=13%  Similarity=0.171  Sum_probs=228.4

Q ss_pred             cCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccC-CCCCeEEEEec--CCCEEEEEeCCCceEEEEeec
Q 005656           47 NAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGH-SAPPLCIRFYA--NGRHILSAGQDRAFRLFSVIQ  123 (685)
Q Consensus        47 ~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h-~~~v~~i~~~~--~~~~l~s~s~dg~i~vwd~~~  123 (685)
                      +.+++++|+|+++.|+.++.+. +.++.++...........+.+| ..+|++++|+|  ++.+|++|+.||+|++||+..
T Consensus        18 ~~~t~l~~~~~~~~la~~~~~~-~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~   96 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPCGKS-AFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTF   96 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEETTE-EEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCC-EEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecC
Confidence            4578999999999999886553 3344444444444455666677 46899999998  578999999999999999987


Q ss_pred             CceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCC
Q 005656          124 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT  203 (685)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  203 (685)
                      +.....+....                                                            ......+..
T Consensus        97 ~~~~~~~~~~~------------------------------------------------------------~~~~~~~~~  116 (325)
T d1pgua1          97 DKESNSVEVNV------------------------------------------------------------KSEFQVLAG  116 (325)
T ss_dssp             EGGGTEEEEEE------------------------------------------------------------EEEEECCSS
T ss_pred             Ccceeeeeccc------------------------------------------------------------ccccccccC
Confidence            65443332100                                                            000014577


Q ss_pred             CeEEEEEccCCCEEEEEec--CCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCE-EEEEECCCeEEEEE
Q 005656          204 AVKACTISACGNFAVLGTA--GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTL-MISAGYHGDIKVWD  280 (685)
Q Consensus       204 ~v~~~~~s~~g~~l~~g~~--dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-l~s~s~dg~i~iwd  280 (685)
                      +|.+++|+++|+++++++.  ++.+.+|+..++.....+.        +|...|.+++|+|++.+ +++++.||.+++||
T Consensus       117 ~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d  188 (325)
T d1pgua1         117 PISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVS--------GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQ  188 (325)
T ss_dssp             CEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECC--------SCSSCEEEEEECSSSSCEEEEEETTTEEEEEE
T ss_pred             cEEEEEECCCCCccceeeccccceEEEEeecccccceeee--------ecccccccccccccccceEEEeeccccccccc
Confidence            8999999999999988765  6789999999988776654        89999999999998865 77899999999999


Q ss_pred             CCCCceEEEeec----CCceeEEEEeec-CCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEc---CCCCEEEE
Q 005656          281 FKGRDLKSRWEV----GCSLVKIVYHRV-NGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFS---EDGKWLLS  352 (685)
Q Consensus       281 ~~~~~~~~~~~~----~~~i~~~~~~~~-~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~s---pdg~~l~s  352 (685)
                      ....+.......    ...|.+++|+|+ +.++++++.|+.|++||+++++.+..+.+|..++..+.|+   |||++|++
T Consensus       189 ~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s  268 (325)
T d1pgua1         189 GPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFAT  268 (325)
T ss_dssp             TTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEE
T ss_pred             ccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEE
Confidence            998877665533    367999999997 5799999999999999999999999999999888777666   78999999


Q ss_pred             EeCCCcEEEEEcCCCceeeEEeeccc---eEEEEEcCC-CCeEEEEEeCCCeEEEEEc
Q 005656          353 SGMDGSLRIWDVILARQIDAIHVDVS---ITALSLSPN-MDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       353 ~s~Dg~I~iwd~~~~~~i~~~~~~~~---v~~v~~spd-g~~Lat~~~d~~~I~lW~~  406 (685)
                      ++.|+.|+|||+.+++++..+..+..   +..+++.+. +.+|++++.|+ .|++|++
T Consensus       269 ~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg-~i~vwdl  325 (325)
T d1pgua1         269 VGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG-TLNFYEL  325 (325)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTS-CEEEEET
T ss_pred             EeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCC-EEEEEEC
Confidence            99999999999999999998875443   444444433 34788899886 9999984

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.2e-33  Score=280.60  Aligned_cols=288  Identities=15%  Similarity=0.190  Sum_probs=224.7

Q ss_pred             CCcEEEEEEccCCCCEEEEEeCCC-cEEEEeCCCC--eeeEEeeccc-ccCeeEEEEeC--CCcEEEEecCCCcEEEEEe
Q 005656            2 RGAVTALAFSSDGQPLLASGASSG-VISIWNLEKR--RLQSVIREAH-DNAIISLHFFA--NEPVLMSASADNSIKMWIF   75 (685)
Q Consensus         2 ~~~V~~l~fspdg~~~latg~~dg-~I~vwd~~~~--~~~~~~~~~h-~~~V~~l~~sp--~~~~l~s~s~D~~v~iWd~   75 (685)
                      ++.+++++|+|+|+ .||.++.+. .|+.|+....  .....+. +| ...|++++|+|  ++.+|++|+.||+|++||+
T Consensus        17 ~~~~t~l~~~~~~~-~la~~~~~~~~i~~~~~~~~~~~~~~~~~-gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~   94 (325)
T d1pgua1          17 RNFTTHLSYDPTTN-AIAYPCGKSAFVRCLDDGDSKVPPVVQFT-GHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGW   94 (325)
T ss_dssp             TTCCCCCEEETTTT-EEEEEETTEEEEEECCSSCCSSCSEEEEC-TTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEE
T ss_pred             CCCeEEEEECCCCC-EEEEEeCCCEEEEEEeCCCCCccceEEEe-CCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeee
Confidence            35678999999999 777765443 3566765443  3355565 66 56899999998  5679999999999999998


Q ss_pred             cCCCCCCce----eEecccCCCCCeEEEEecCCCEEEEEeC--CCceEEEEeecCceeeEechhhHHHHHhhcccccccc
Q 005656           76 DTTDGDPRL----LRFRSGHSAPPLCIRFYANGRHILSAGQ--DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEEL  149 (685)
Q Consensus        76 ~~~~~~~~~----~~~~~~h~~~v~~i~~~~~~~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (685)
                      .........    ......|.++|.+++|+++++++++++.  ++.+++|+..+++....+.                  
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------------  156 (325)
T d1pgua1          95 TFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVS------------------  156 (325)
T ss_dssp             EEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECC------------------
T ss_pred             cCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeee------------------
Confidence            765322111    1234578999999999999999988764  6789999987776554442                  


Q ss_pred             ccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCE-EEEEecCCcEEE
Q 005656          150 KLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNF-AVLGTAGGWIER  228 (685)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~g~~dg~i~~  228 (685)
                                                                        .|...+.+++|+|++.+ +++++.||.+++
T Consensus       157 --------------------------------------------------~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~  186 (325)
T d1pgua1         157 --------------------------------------------------GHSQRINACHLKQSRPMRSMTVGDDGSVVF  186 (325)
T ss_dssp             --------------------------------------------------SCSSCEEEEEECSSSSCEEEEEETTTEEEE
T ss_pred             --------------------------------------------------ecccccccccccccccceEEEeeccccccc
Confidence                                                              57788999999999875 677999999999


Q ss_pred             EECCCCccccccccccccccCCCCcCEEEEEEcCC-CCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEe---e
Q 005656          229 FNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYH---R  303 (685)
Q Consensus       229 ~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~---~  303 (685)
                      |++.+++......     ....|...|.+++|+|+ +.++++++.||.|++||+++++.+..+..+ .++..+.|+   |
T Consensus       187 ~d~~~~~~~~~~~-----~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~  261 (325)
T d1pgua1         187 YQGPPFKFSASDR-----THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL  261 (325)
T ss_dssp             EETTTBEEEEEEC-----SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES
T ss_pred             ccccccccceecc-----cccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeecc
Confidence            9998876655443     23378889999999996 688999999999999999999998888754 445444444   6


Q ss_pred             cCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCC--eEEEEEcCC-CCEEEEEeCCCcEEEEEc
Q 005656          304 VNGLLATVADDLVIRLFDVVALRMVRKFEGHTDR--ITDFCFSED-GKWLLSSGMDGSLRIWDV  364 (685)
Q Consensus       304 ~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~--I~~l~~spd-g~~l~s~s~Dg~I~iwd~  364 (685)
                      ++++|++++.|+.|+|||+.++++++.+..|...  +..+++.+. +.+|+++|.||+|++||+
T Consensus       262 dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         262 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             CCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            8999999999999999999999999999877654  334444432 348999999999999996

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.3e-31  Score=271.50  Aligned_cols=291  Identities=16%  Similarity=0.238  Sum_probs=224.9

Q ss_pred             eEEeecccccCe-eEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCce
Q 005656           38 QSVIREAHDNAI-ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAF  116 (685)
Q Consensus        38 ~~~~~~~h~~~V-~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i  116 (685)
                      ..+++ ||.+.| +|++|  ++++|+||+.||+|++||+.++    +++..+.+|.++|++++|+|+ .+|++|+.||+|
T Consensus         5 ~~tL~-GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~----~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i   76 (355)
T d1nexb2           5 RTTLR-GHMTSVITCLQF--EDNYVITGADDKMIRVYDSINK----KFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTV   76 (355)
T ss_dssp             EEEEE-CCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTT----EEEEEEECCSSCEEEEEEETT-TEEEEEETTCCE
T ss_pred             cEEEC-CcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCC----cEEEEEECCCCCEEEEEEcCC-CEEEEEeccccc
Confidence            34566 998886 55555  5789999999999999999876    788899999999999999986 589999999999


Q ss_pred             EEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeec
Q 005656          117 RLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR  196 (685)
Q Consensus       117 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  196 (685)
                      ++|++...........                                                                
T Consensus        77 ~iw~~~~~~~~~~~~~----------------------------------------------------------------   92 (355)
T d1nexb2          77 RVWDIKKGCCTHVFEG----------------------------------------------------------------   92 (355)
T ss_dssp             EEEETTTTEEEEEECC----------------------------------------------------------------
T ss_pred             cccccccccccccccc----------------------------------------------------------------
Confidence            9999877665443321                                                                


Q ss_pred             CCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccccc---------------ccccCCCCcCEEEEEEc
Q 005656          197 PCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMS---------------ERSNYAHNGEVVGVACD  261 (685)
Q Consensus       197 ~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~---------------~~~~~~h~~~v~~l~~~  261 (685)
                        ...........+++++.++++++.||.|++||+.++..........               ......|...+..  +.
T Consensus        93 --~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~  168 (355)
T d1nexb2          93 --HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT--VS  168 (355)
T ss_dssp             --CSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEE--EE
T ss_pred             --ccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccc--cc
Confidence              0223345566778899999999999999999998765543321100               0011133444443  34


Q ss_pred             CCCCEEEEEECCCeEEEEECCCCceEEEeec-CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEE
Q 005656          262 STNTLMISAGYHGDIKVWDFKGRDLKSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITD  340 (685)
Q Consensus       262 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~  340 (685)
                      ++++.++++..|+.|++||+.+++.+..... ...+.++.++|++.++++++.|+.|++||+.++..+..+.+|...|++
T Consensus       169 ~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~  248 (355)
T d1nexb2         169 GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGL  248 (355)
T ss_dssp             EETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCE
T ss_pred             cccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccccccccccccccccc
Confidence            5678999999999999999999988877664 478899999999999999999999999999999999999999999999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656          341 FCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRC  408 (685)
Q Consensus       341 l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~  408 (685)
                      ++|+  +++|++|+.||.|++||+.++................+++++.+|++++ |+ .|++|+.+.
T Consensus       249 ~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-d~-~i~vwd~~t  312 (355)
T d1nexb2         249 LRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-EN-QFNIYNLRS  312 (355)
T ss_dssp             EEEC--SSEEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEEE-TT-EEEEEETTT
T ss_pred             cccc--cceeeeeecccccccccccccceecccccCCceEEEEEcCCCCEEEEEe-CC-EEEEEECCC
Confidence            9996  4799999999999999999887665544333333445677877776664 76 999999754

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5e-32  Score=271.53  Aligned_cols=259  Identities=20%  Similarity=0.374  Sum_probs=223.6

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG   80 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~   80 (685)
                      |+++|++++|+|++. ++++++.++.+.+|+....+....+. +|...+.++.|+|+++.+++++.|+.+++|++..+  
T Consensus        58 h~~~V~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--  133 (317)
T d1vyhc1          58 HTDSVQDISFDHSGK-LLASCSADMTIKLWDFQGFECIRTMH-GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG--  133 (317)
T ss_dssp             CSSCEEEEEECTTSS-EEEEEETTSCCCEEETTSSCEEECCC-CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC--
T ss_pred             CCCcEEEEeeecccc-cccccccccccccccccccccccccc-cccccceeeeccCCCceEEeeccCcceeEeecccc--
Confidence            788999999999998 99999999999999999988888887 89999999999999999999999999999999876  


Q ss_pred             CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656           81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  160 (685)
Q Consensus        81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (685)
                        ..+..+.+|...+.+++|+|++.+|++++.||.|++|++.++.....+.                             
T Consensus       134 --~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-----------------------------  182 (317)
T d1vyhc1         134 --YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR-----------------------------  182 (317)
T ss_dssp             --CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-----------------------------
T ss_pred             --eeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEe-----------------------------
Confidence              6777788999999999999999999999999999999998776655442                             


Q ss_pred             cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656          161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  240 (685)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~  240 (685)
                                                             .+...+.+++++|++.....                     
T Consensus       183 ---------------------------------------~~~~~i~~~~~~~~~~~~~~---------------------  202 (317)
T d1vyhc1         183 ---------------------------------------EHRHVVECISWAPESSYSSI---------------------  202 (317)
T ss_dssp             ---------------------------------------CCSSCEEEEEECCSCGGGGG---------------------
T ss_pred             ---------------------------------------cCCCCceEEEEeecccccee---------------------
Confidence                                                   45667888888876542211                     


Q ss_pred             ccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec-CCceeEEEEeecCCEEEEEeCCCeEEE
Q 005656          241 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRL  319 (685)
Q Consensus       241 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~I~i  319 (685)
                               ..............+..+++++.||.|++||+.+++++..+.. ...+.+++++|++++|++|+.||.|++
T Consensus       203 ---------~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~i  273 (317)
T d1vyhc1         203 ---------SEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRV  273 (317)
T ss_dssp             ---------GGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEE
T ss_pred             ---------eccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEE
Confidence                     1111222333445678899999999999999999999888775 488999999999999999999999999


Q ss_pred             EEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005656          320 FDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD  363 (685)
Q Consensus       320 ~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd  363 (685)
                      ||+.+++++.++.+|.+.|++++|+|++++|++|+.||+|+|||
T Consensus       274 wd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         274 WDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             ECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            99999999999999999999999999999999999999999997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.2e-32  Score=273.81  Aligned_cols=297  Identities=13%  Similarity=0.110  Sum_probs=224.5

Q ss_pred             eeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecC-CCEEEEEeCCCc
Q 005656           37 LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRA  115 (685)
Q Consensus        37 ~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~dg~  115 (685)
                      .+...+ +|.+.|++|+|+|++++|++|+.||+|+|||++.......+ ....+|..+|.+++|+|+ +.+|++|+.||.
T Consensus         3 ~v~~~~-~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~-~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~   80 (342)
T d1yfqa_           3 IVQIEQ-APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDL-LQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE   80 (342)
T ss_dssp             EEECSS-CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEE-EEEEECSSCEEEEEEEESSSEEEEEEETTSC
T ss_pred             eEEcCC-CCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEE-EEecCCCCCEEEEEEeCCCCCEEEEcccccc
Confidence            444444 99999999999999999999999999999999876433333 333479999999999997 558999999999


Q ss_pred             eEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceee
Q 005656          116 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL  195 (685)
Q Consensus       116 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  195 (685)
                      |++|++...........                                                               
T Consensus        81 v~~w~~~~~~~~~~~~~---------------------------------------------------------------   97 (342)
T d1yfqa_          81 ILKVDLIGSPSFQALTN---------------------------------------------------------------   97 (342)
T ss_dssp             EEEECSSSSSSEEECBS---------------------------------------------------------------
T ss_pred             eeeeecccccccccccc---------------------------------------------------------------
Confidence            99999877654433321                                                               


Q ss_pred             cCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCe
Q 005656          196 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD  275 (685)
Q Consensus       196 ~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~  275 (685)
                          ..........+.+++..+++++.++.+.+||++++...........  ...+........+.+.+..+++++.||.
T Consensus        98 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~  171 (342)
T d1yfqa_          98 ----NEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN--SNNTKVKNKIFTMDTNSSRLIVGMNNSQ  171 (342)
T ss_dssp             ----CCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESC--SSSSSSCCCEEEEEECSSEEEEEESTTE
T ss_pred             ----cccccccccccccccccccccccccccceeeccccccceeeecccc--cccccceeeeeeeeccCCceeeecCCCc
Confidence                2334445666778889999999999999999876544333221110  1122334455667778889999999999


Q ss_pred             EEEEECCCCceEEEe----ecCCceeEEEEe-ecCCEEEEEeCCCeEEEEEcCCCee---------EE------EEecCC
Q 005656          276 IKVWDFKGRDLKSRW----EVGCSLVKIVYH-RVNGLLATVADDLVIRLFDVVALRM---------VR------KFEGHT  335 (685)
Q Consensus       276 i~iwd~~~~~~~~~~----~~~~~i~~~~~~-~~~~~l~~~~~dg~I~i~d~~~~~~---------~~------~~~~h~  335 (685)
                      |++||+.........    .......+..+. .++..+++++.||.+.+|+......         ..      ...+|.
T Consensus       172 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (342)
T d1yfqa_         172 VQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLA  251 (342)
T ss_dssp             EEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSC
T ss_pred             EEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCccc
Confidence            999999866543222    223445555544 4567999999999999999764321         11      113567


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656          336 DRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       336 ~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~  405 (685)
                      ..|++++|+|++++|++|+.||.|++||+.+++.+..+.....+..++|+|+|++|++++.|+ .+++|.
T Consensus       252 ~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd-~~~~~~  320 (342)
T d1yfqa_         252 YPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDD-TFKTNA  320 (342)
T ss_dssp             CCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECT-HHHHCS
T ss_pred             ccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcCC-cEEEee
Confidence            789999999999999999999999999999999998887666777889999999999999997 777774

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-30  Score=257.85  Aligned_cols=271  Identities=20%  Similarity=0.335  Sum_probs=217.0

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG   80 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~   80 (685)
                      |...|+|++|  ||+ +||||+.||+|+|||+.+++++.++. +|.++|++++|  ++++|++|+.|+.|++|++..+  
T Consensus        14 ~~~~V~c~~~--d~~-~l~sgs~Dg~i~vWd~~~~~~~~~l~-~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~--   85 (293)
T d1p22a2          14 TSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRILT-GHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG--   85 (293)
T ss_dssp             SCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEEEC-CCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC--
T ss_pred             CCCCEEEEEE--cCC-EEEEEeCCCeEEEEECCCCcEEEEEe-cCCCCEeeeec--ccceeecccccccccccccccc--
Confidence            5678998765  687 99999999999999999999999998 99999999987  5789999999999999998876  


Q ss_pred             CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656           81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  160 (685)
Q Consensus        81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (685)
                        ........+.  .....+.+....++++..++.+++|+............                            
T Consensus        86 --~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------  133 (293)
T d1p22a2          86 --EMLNTLIHHC--EAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRV----------------------------  133 (293)
T ss_dssp             --CEEEEECCCC--SCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEE----------------------------
T ss_pred             --cccccccccc--cccccccccccceeecccccceeEeecccccccccccc----------------------------
Confidence              3333332222  33445556677899999999999999876543222210                            


Q ss_pred             cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656          161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  240 (685)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~  240 (685)
                                                           ...+...+.++.+  ....+++++.|+.|++||+.+++....+
T Consensus       134 -------------------------------------~~~~~~~v~~~~~--~~~~~~~~s~d~~i~~~d~~~~~~~~~~  174 (293)
T d1p22a2         134 -------------------------------------LVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTL  174 (293)
T ss_dssp             -------------------------------------ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             -------------------------------------cccccccccccee--cccccccccCCCceeeecCCCCcEEEEE
Confidence                                                 0134555655554  4567889999999999999999887766


Q ss_pred             ccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEE
Q 005656          241 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLF  320 (685)
Q Consensus       241 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~  320 (685)
                      .        +|...+..+.++  +..+++++.||.|++||+++...+.....+.... ..+++++.+|++|+.||.|++|
T Consensus       175 ~--------~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v-~~~~~~~~~l~sg~~dg~i~iw  243 (293)
T d1p22a2         175 N--------GHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELV-RCIRFDNKRIVSGAYDGKIKVW  243 (293)
T ss_dssp             E--------CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCE-EEEECCSSEEEEEETTSCEEEE
T ss_pred             c--------ccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceee-eeccccceEEEEEcCCCEEEEE
Confidence            4        788888888876  4689999999999999999998888777653332 3466788999999999999999


Q ss_pred             EcCC---------CeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005656          321 DVVA---------LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD  363 (685)
Q Consensus       321 d~~~---------~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd  363 (685)
                      |+.+         ...+..+.+|.+.|++++|  ++++|+|||.||+|++||
T Consensus       244 d~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         244 DLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             EHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred             ECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCCEEEEeC
Confidence            9753         3568889999999999999  567899999999999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.5e-31  Score=272.43  Aligned_cols=333  Identities=10%  Similarity=0.130  Sum_probs=234.2

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCee------eEEeecccccCeeEEEEeC-------CCcEEEEecCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL------QSVIREAHDNAIISLHFFA-------NEPVLMSASAD   67 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~------~~~~~~~h~~~V~~l~~sp-------~~~~l~s~s~D   67 (685)
                      |++.|.++++++  + +++||+.||+|+|||..+...      ..... .|...+..+....       ++.++++++.|
T Consensus        13 H~~~I~~v~~~~--~-~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d   88 (393)
T d1sq9a_          13 HDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELCLVATTSFS   88 (393)
T ss_dssp             SSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEEEEEEEETT
T ss_pred             ccCccEEEEEeC--C-EEEEEECCCeEEEEECCCCCCCcccceeEeee-eccCCceEeeeEeeeccCCCCCcEEEEEeCC
Confidence            899999999875  4 899999999999999765431      11222 4555544433321       23478899999


Q ss_pred             CcEEEEEecCCCCCCceeEe------cccCCCCCeEEEEecC-----CCEEEEEeCCCceEEEEeecCceeeEechhhHH
Q 005656           68 NSIKMWIFDTTDGDPRLLRF------RSGHSAPPLCIRFYAN-----GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVA  136 (685)
Q Consensus        68 ~~v~iWd~~~~~~~~~~~~~------~~~h~~~v~~i~~~~~-----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~  136 (685)
                      |.|++|++............      ...+...+..++|.++     +.++++++.||++++|++..........     
T Consensus        89 g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~-----  163 (393)
T d1sq9a_          89 GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL-----  163 (393)
T ss_dssp             SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT-----
T ss_pred             CcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCccccee-----
Confidence            99999998765433222211      1234556778888775     4689999999999999986443211000     


Q ss_pred             HHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCE
Q 005656          137 KRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNF  216 (685)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  216 (685)
                          ..       ...+...                         .         .........+...+.+++|+|++ +
T Consensus       164 ----~~-------~~~~~~~-------------------------~---------~~~~~~~~~~~~~~~~v~~s~dg-~  197 (393)
T d1sq9a_         164 ----TL-------NWSPTLE-------------------------L---------QGTVESPMTPSQFATSVDISERG-L  197 (393)
T ss_dssp             ----TT-------CCCCEEE-------------------------E---------EEEECCSSSSCCCCCEEEECTTS-E
T ss_pred             ----ee-------eecccee-------------------------c---------ccceecccCCCCcEEEEEECCCC-E
Confidence                00       0000000                         0         00111112445668899999998 8


Q ss_pred             EEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCC---eEEEEECCCCceEEEee--
Q 005656          217 AVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG---DIKVWDFKGRDLKSRWE--  291 (685)
Q Consensus       217 l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~--  291 (685)
                      +++|+.||.|++||+.+++....+...  ....+|..+|++++|+|++++|++|+.|+   .|++||+.+++.+..+.  
T Consensus       198 lasgs~Dg~i~iwd~~~~~~~~~~~~~--~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~  275 (393)
T d1sq9a_         198 IATGFNNGTVQISELSTLRPLYNFESQ--HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVP  275 (393)
T ss_dssp             EEEECTTSEEEEEETTTTEEEEEEECC--C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC
T ss_pred             EEEEeCCCcEEEEeecccccccccccc--cccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccc
Confidence            899999999999999998876655321  12337999999999999999999999887   49999999998887764  


Q ss_pred             ------------cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeE----EEEEcCCCCEEEEEeC
Q 005656          292 ------------VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRIT----DFCFSEDGKWLLSSGM  355 (685)
Q Consensus       292 ------------~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~----~l~~spdg~~l~s~s~  355 (685)
                                  |...|++++|+|++++|++|+.|++|++||+.+++++.++.+|.+.|.    .++|+|++..+++++ 
T Consensus       276 ~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~-  354 (393)
T d1sq9a_         276 THSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG-  354 (393)
T ss_dssp             --------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC-
T ss_pred             cccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcc-
Confidence                        447899999999999999999999999999999999999999998876    488999999887554 


Q ss_pred             CCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656          356 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       356 Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~  405 (685)
                        ...+|.++.+....           ........+++++.|+ .|++|.
T Consensus       355 --~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~d~-~ir~~~  390 (393)
T d1sq9a_         355 --VFDVKFLKKGWRSG-----------MGADLNESLCCVCLDR-SIRWFR  390 (393)
T ss_dssp             --EEEEEEECTTTSBS-----------TTCTTSCEEEEEETTT-EEEEEE
T ss_pred             --cceEEECccCceec-----------cccCCCCEEEEEEcCC-eEEEEe
Confidence              22233222221110           0112345688888886 999985

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=5.8e-31  Score=261.28  Aligned_cols=261  Identities=20%  Similarity=0.327  Sum_probs=203.8

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG   80 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~   80 (685)
                      |+++|++++|+|     |+||+.||+|++||+.++.     . +|...|.+++|++++ .+++++.|+++++|++...  
T Consensus        12 H~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~~-----~-~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~--   77 (287)
T d1pgua2          12 HNKGITALTVNP-----LISGSYDGRIMEWSSSSMH-----Q-DHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKH--   77 (287)
T ss_dssp             CSSCEEEEETTT-----TEEEETTSCEEETTTTEEE-----C-CCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEE--
T ss_pred             CCCceEEEEECc-----EEEEeCCCeEEEEECCCCC-----C-CCCCCEEEEEecCCC-eEEEEeecccccccccccc--
Confidence            888999999976     7888999999999876532     3 788889999988754 5788888999999976542  


Q ss_pred             CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656           81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  160 (685)
Q Consensus        81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (685)
                               .+...+.++.+++++..++++ .++.+.+|+..++.....+.                             
T Consensus        78 ---------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----------------------------  118 (287)
T d1pgua2          78 ---------EFGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVR-----------------------------  118 (287)
T ss_dssp             ---------ECSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEE-----------------------------
T ss_pred             ---------ccccceeeeeeccCCceEEEe-ecccceeeeccceeeeeecc-----------------------------
Confidence                     123446677888777655554 45667788776665444331                             


Q ss_pred             cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCC-cEEEEECCCCccccc
Q 005656          161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG-WIERFNLQSGISRGS  239 (685)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg-~i~~~d~~~~~~~~~  239 (685)
                                                              ...  ...+++++++.+++++.++ .+++|++........
T Consensus       119 ----------------------------------------~~~--~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~  156 (287)
T d1pgua2         119 ----------------------------------------LNS--PGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFD  156 (287)
T ss_dssp             ----------------------------------------CSS--CEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEE
T ss_pred             ----------------------------------------ccc--eeeeeeccCcceeeeccccceeeeeeccccceeee
Confidence                                                    111  2346677888888888875 699999976655444


Q ss_pred             cccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEE-ee-cCCceeEEEEeec----------CCE
Q 005656          240 YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSR-WE-VGCSLVKIVYHRV----------NGL  307 (685)
Q Consensus       240 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~-~~~~i~~~~~~~~----------~~~  307 (685)
                      +.       ..|.+.+++++|+|++.+|++|+.||.|++||+.++..... +. +..+|.+++|+|.          +.+
T Consensus       157 ~~-------~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~  229 (287)
T d1pgua2         157 LK-------TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDL  229 (287)
T ss_dssp             CS-------SCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCE
T ss_pred             ee-------eccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCe
Confidence            32       26888999999999999999999999999999998876553 33 3478999999875          468


Q ss_pred             EEEEeCCCeEEEEEcCC-CeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005656          308 LATVADDLVIRLFDVVA-LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV  364 (685)
Q Consensus       308 l~~~~~dg~I~i~d~~~-~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~  364 (685)
                      +++|+.|++|++||+.+ .+.+..+.+|.+.|++++|+|++ .|++++.||+|++|++
T Consensus       230 l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         230 VATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             eEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            99999999999999976 56778888999999999999986 5889999999999996

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.4e-29  Score=250.62  Aligned_cols=270  Identities=20%  Similarity=0.341  Sum_probs=218.1

Q ss_pred             ccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeec
Q 005656           44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ  123 (685)
Q Consensus        44 ~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~  123 (685)
                      .|...|+|++  +|+++||||+.||+|++||+.++    +++..+.+|..+|++++|  ++++|++|+.||.|++|++..
T Consensus        13 ~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~----~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~   84 (293)
T d1p22a2          13 ETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTL----ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT   84 (293)
T ss_dssp             SSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSC----CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred             CCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCC----cEEEEEecCCCCEeeeec--ccceeeccccccccccccccc
Confidence            6888999875  47899999999999999999877    788889999999999887  577999999999999999987


Q ss_pred             CceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCC
Q 005656          124 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT  203 (685)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  203 (685)
                      +.......                                                                      ..
T Consensus        85 ~~~~~~~~----------------------------------------------------------------------~~   94 (293)
T d1p22a2          85 GEMLNTLI----------------------------------------------------------------------HH   94 (293)
T ss_dssp             CCEEEEEC----------------------------------------------------------------------CC
T ss_pred             cccccccc----------------------------------------------------------------------cc
Confidence            76544332                                                                      11


Q ss_pred             CeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005656          204 AVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG  283 (685)
Q Consensus       204 ~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~  283 (685)
                      ........+....++++..++.+.+|+..+........     ....|...+..+.+.+  ..+++++.|+.|++||..+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~~~  167 (293)
T d1p22a2          95 CEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR-----VLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTST  167 (293)
T ss_dssp             CSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEE-----EECCCSSCEEEEEEET--TEEEEEETTSEEEEEETTT
T ss_pred             ccccccccccccceeecccccceeEeeccccccccccc-----cccccccccccceecc--cccccccCCCceeeecCCC
Confidence            12233455566789999999999999998776543322     2237888888888764  4788999999999999999


Q ss_pred             CceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005656          284 RDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIW  362 (685)
Q Consensus       284 ~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iw  362 (685)
                      ++.+..+..+ ..+..+.+  ++..+++++.|+.|++||+.+.+.+..+.+|...+..  +++++.+|++++.||.|++|
T Consensus       168 ~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iw  243 (293)
T d1p22a2         168 CEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVW  243 (293)
T ss_dssp             CCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEE
T ss_pred             CcEEEEEcccccccccccC--CCCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEcCCCEEEEE
Confidence            9988877654 45555544  5789999999999999999999999999999988875  55688999999999999999


Q ss_pred             EcCCC---------ceeeEEeecc-ceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656          363 DVILA---------RQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       363 d~~~~---------~~i~~~~~~~-~v~~v~~spdg~~Lat~~~d~~~I~lW~  405 (685)
                      |+.++         ..+..+..|. .|++++|  ++.+|++++.|+ .|++||
T Consensus       244 d~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg-~i~iWD  293 (293)
T d1p22a2         244 DLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDD-TILIWD  293 (293)
T ss_dssp             EHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSS-EEEEEC
T ss_pred             ECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCC-EEEEeC
Confidence            97543         3456666554 4999999  467899999997 999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=9.8e-31  Score=264.87  Aligned_cols=292  Identities=10%  Similarity=0.106  Sum_probs=218.4

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEee--cccccCeeEEEEeCCC-cEEEEecCCCcEEEEEecC
Q 005656            1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR--EAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDT   77 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~--~~h~~~V~~l~~sp~~-~~l~s~s~D~~v~iWd~~~   77 (685)
                      |++.|++|+|+|+|+ +||+|+.||+|+|||+.++.....+.  .+|.++|.+++|+|++ .+|++|+.|++|++|++..
T Consensus        10 h~d~I~~l~fsp~~~-~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~   88 (342)
T d1yfqa_          10 PKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG   88 (342)
T ss_dssp             CSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS
T ss_pred             CCCCEEEEEEeCCCC-EEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccc
Confidence            788999999999999 99999999999999987654322221  2699999999999875 5899999999999998876


Q ss_pred             CCCCCceeEecc-cCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceee
Q 005656           78 TDGDPRLLRFRS-GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA  156 (685)
Q Consensus        78 ~~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (685)
                      ..    ...... .+........+.+++..+++++.|+++++||++............                      
T Consensus        89 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~----------------------  142 (342)
T d1yfqa_          89 SP----SFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNL----------------------  142 (342)
T ss_dssp             SS----SEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEES----------------------
T ss_pred             cc----ccccccccccccccccccccccccccccccccccceeeccccccceeeeccc----------------------
Confidence            63    333333 344444556667788899999999999999987654332221000                      


Q ss_pred             eecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcc
Q 005656          157 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS  236 (685)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~  236 (685)
                                                              .............+.+.++.+++++.+|.|++|++..+..
T Consensus       143 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~  182 (342)
T d1yfqa_         143 ----------------------------------------NSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCED  182 (342)
T ss_dssp             ----------------------------------------CSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTT
T ss_pred             ----------------------------------------ccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcc
Confidence                                                    0001223345667788899999999999999999988766


Q ss_pred             ccccccccccccCCCCcCEEEEEEcC-CCCEEEEEECCCeEEEEECCCCceEE------E----------eecCCceeEE
Q 005656          237 RGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYHGDIKVWDFKGRDLKS------R----------WEVGCSLVKI  299 (685)
Q Consensus       237 ~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~------~----------~~~~~~i~~~  299 (685)
                      ......     ...+...+.+..+.+ ++..+++++.||.+.+|++.......      .          ..+...+.++
T Consensus       183 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l  257 (342)
T d1yfqa_         183 DNGTIE-----ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSI  257 (342)
T ss_dssp             CCCEEE-----ECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEE
T ss_pred             cceeee-----ecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeE
Confidence            544321     114445566666554 56789999999999999987532111      0          0122568899


Q ss_pred             EEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005656          300 VYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI  365 (685)
Q Consensus       300 ~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~  365 (685)
                      +|+|++++|++|+.||.|++||+.+++.+..+..+ ..+..++|+|+|++|++|+.|+++++|...
T Consensus       258 ~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~  322 (342)
T d1yfqa_         258 EFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             EECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred             EecCCccEEEEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEEeCCCEEEEEEcCCcEEEeeee
Confidence            99999999999999999999999999999888643 345667888999999999999988888653

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.1e-29  Score=257.42  Aligned_cols=285  Identities=19%  Similarity=0.311  Sum_probs=226.8

Q ss_pred             EeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEE
Q 005656           30 WNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS  109 (685)
Q Consensus        30 wd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s  109 (685)
                      |+..+.++...++ ||.+.|.+ +++++|++|||||.||+|+|||+.++    +++..+.+|..+|.+++|+|+  +|++
T Consensus         1 W~~~~~~~~~~l~-GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~----~~~~~~~~h~~~V~~v~~~~~--~l~s   72 (342)
T d2ovrb2           1 WRRGELKSPKVLK-GHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTG----KCLRTLVGHTGGVWSSQMRDN--IIIS   72 (342)
T ss_dssp             HHHSCCCCCEEEE-CSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTC----CEEEECCCCSSCEEEEEEETT--EEEE
T ss_pred             CCCCCCCcCEEEC-CcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCC----CEEEEEeCCCCCEEEEEeCCC--cccc
Confidence            6666777888888 99999876 46778999999999999999999876    788889999999999999875  9999


Q ss_pred             EeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccc
Q 005656          110 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV  189 (685)
Q Consensus       110 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~  189 (685)
                      ++.|+.+++|+...........                                                          
T Consensus        73 ~s~D~~~~~~~~~~~~~~~~~~----------------------------------------------------------   94 (342)
T d2ovrb2          73 GSTDRTLKVWNAETGECIHTLY----------------------------------------------------------   94 (342)
T ss_dssp             EETTSCEEEEETTTTEEEEEEC----------------------------------------------------------
T ss_pred             ceecccccccccccccceeccc----------------------------------------------------------
Confidence            9999999999986654433221                                                          


Q ss_pred             cCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEE
Q 005656          190 LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS  269 (685)
Q Consensus       190 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s  269 (685)
                                .....+..  ....+..+..+..++.+.+|+..++.....+.        .+.....  ...+....+++
T Consensus        95 ----------~~~~~~~~--~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~--------~~~~~~~--~~~~~~~~~~~  152 (342)
T d2ovrb2          95 ----------GHTSTVRC--MHLHEKRVVSGSRDATLRVWDIETGQCLHVLM--------GHVAAVR--CVQYDGRRVVS  152 (342)
T ss_dssp             ----------CCSSCEEE--EEEETTEEEEEETTSEEEEEESSSCCEEEEEE--------CCSSCEE--EEEECSSCEEE
T ss_pred             ----------ccceeEee--eecccccccccccceeEEEeecccccceeeee--------cccccce--eeccccceeee
Confidence                      11222222  23345678889999999999999987766553        2222222  33345667899


Q ss_pred             EECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCE
Q 005656          270 AGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKW  349 (685)
Q Consensus       270 ~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~  349 (685)
                      ++.|+.|++||.........+..+ ......+++++.++++|+.||.|++||+..++.+..+.+|...+.+++++  +++
T Consensus       153 ~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~  229 (342)
T d2ovrb2         153 GAYDFMVKVWDPETETCLHTLQGH-TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNI  229 (342)
T ss_dssp             EETTSCEEEEEGGGTEEEEEECCC-SSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTE
T ss_pred             ecCCCeEEEeecccceeeEEEcCc-ccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCE
Confidence            999999999999988887776654 33455667789999999999999999999999999999999999988875  469


Q ss_pred             EEEEeCCCcEEEEEcCCCceeeEEeecc----ceEEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656          350 LLSSGMDGSLRIWDVILARQIDAIHVDV----SITALSLSPNMDVLATAHVDQNGVYLWVNRC  408 (685)
Q Consensus       350 l~s~s~Dg~I~iwd~~~~~~i~~~~~~~----~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~  408 (685)
                      |++++.||.|++||+...+....+..+.    .+.++.+  +++++++++.|+ .|++|+.+.
T Consensus       230 l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg-~i~iwd~~t  289 (342)
T d2ovrb2         230 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDG-TVKLWDLKT  289 (342)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTS-EEEEEETTT
T ss_pred             EEEEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCC-EEEEEECCC
Confidence            9999999999999999998887776432    3666666  457999999887 999999653

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.7e-30  Score=257.78  Aligned_cols=268  Identities=16%  Similarity=0.167  Sum_probs=214.4

Q ss_pred             CeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCC
Q 005656           35 RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR  114 (685)
Q Consensus        35 ~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg  114 (685)
                      .+++++++ ||.++|++++|+|    |+||+.||+|++||+.+.         ..+|...|.++.|++++ .+++++.|+
T Consensus         3 ~~~i~~l~-gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~---------~~~h~~~V~~~~~~~~~-~~~s~s~D~   67 (287)
T d1pgua2           3 DEVLKTIS-GHNKGITALTVNP----LISGSYDGRIMEWSSSSM---------HQDHSNLIVSLDNSKAQ-EYSSISWDD   67 (287)
T ss_dssp             EEEEEEEC-CCSSCEEEEETTT----TEEEETTSCEEETTTTEE---------ECCCCSCEEEEECCSTT-CCEEEETTT
T ss_pred             cceeEEEC-CCCCceEEEEECc----EEEEeCCCeEEEEECCCC---------CCCCCCCEEEEEecCCC-eEEEEeecc
Confidence            46788888 9999999999987    999999999999976542         25899999999998764 689999999


Q ss_pred             ceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCcee
Q 005656          115 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI  194 (685)
Q Consensus       115 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  194 (685)
                      ++++|++...+                                                                     
T Consensus        68 ~v~~w~~~~~~---------------------------------------------------------------------   78 (287)
T d1pgua2          68 TLKVNGITKHE---------------------------------------------------------------------   78 (287)
T ss_dssp             EEEETTEEEEE---------------------------------------------------------------------
T ss_pred             ccccccccccc---------------------------------------------------------------------
Confidence            99999875431                                                                     


Q ss_pred             ecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCC
Q 005656          195 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG  274 (685)
Q Consensus       195 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg  274 (685)
                            ....+.++++++++..++++ .++.+.+|+..++.....+         .+...+.  ++++++..+++++.++
T Consensus        79 ------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------~~~~~~~--~~~~~~~~~~v~~~~~  140 (287)
T d1pgua2          79 ------FGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSV---------RLNSPGS--AVSLSQNYVAVGLEEG  140 (287)
T ss_dssp             ------CSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEE---------ECSSCEE--EEEECSSEEEEEETTT
T ss_pred             ------cccceeeeeeccCCceEEEe-ecccceeeeccceeeeeec---------cccceee--eeeccCcceeeecccc
Confidence                  12346677888887777665 4556889999888876655         2333443  4566777888887765


Q ss_pred             -eEEEEECCCCceEEEee--cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEE-EEecCCCCeEEEEEcCC----
Q 005656          275 -DIKVWDFKGRDLKSRWE--VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR-KFEGHTDRITDFCFSED----  346 (685)
Q Consensus       275 -~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~-~~~~h~~~I~~l~~spd----  346 (685)
                       .+++|++..........  +...+++++|+|++.+|++|+.||.|++||+.+++... .+.+|..+|++++|+|+    
T Consensus       141 ~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~  220 (287)
T d1pgua2         141 NTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGA  220 (287)
T ss_dssp             SCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC---
T ss_pred             ceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeeccccccc
Confidence             79999998766655544  34789999999999999999999999999999988765 46789999999999874    


Q ss_pred             ------CCEEEEEeCCCcEEEEEcCC-CceeeEEeec-cceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656          347 ------GKWLLSSGMDGSLRIWDVIL-ARQIDAIHVD-VSITALSLSPNMDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       347 ------g~~l~s~s~Dg~I~iwd~~~-~~~i~~~~~~-~~v~~v~~spdg~~Lat~~~d~~~I~lW~~  406 (685)
                            +.+|++|+.|++|++||+.+ ++.+..+..| ..|++++|+|++ .|++++.|+ .|++|+.
T Consensus       221 ~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~-~v~iW~i  286 (287)
T d1pgua2         221 NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADA-CIKRWNV  286 (287)
T ss_dssp             ---CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTS-CEEEEEE
T ss_pred             ccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCC-eEEEEEE
Confidence                  46899999999999999977 4555555544 459999999987 588888887 9999974

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.7e-30  Score=267.95  Aligned_cols=292  Identities=17%  Similarity=0.232  Sum_probs=214.9

Q ss_pred             cccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCc--eeEecccCCCCCeEEEEec-------CCCEEEEEeCC
Q 005656           43 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPR--LLRFRSGHSAPPLCIRFYA-------NGRHILSAGQD  113 (685)
Q Consensus        43 ~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~--~~~~~~~h~~~v~~i~~~~-------~~~~l~s~s~d  113 (685)
                      .+|.+.|.++++++  ++++|+|.|++|++||....+....  .......|...+..+....       ++..+++++.|
T Consensus        11 ~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d   88 (393)
T d1sq9a_          11 KAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFS   88 (393)
T ss_dssp             SCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETT
T ss_pred             CcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCC
Confidence            49999999999874  6999999999999999776543221  1222234554444333321       23567899999


Q ss_pred             CceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCce
Q 005656          114 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH  193 (685)
Q Consensus       114 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  193 (685)
                      |.|++|++............                                                  ...       
T Consensus        89 g~v~~w~~~~~~~~~~~~~~--------------------------------------------------~~~-------  111 (393)
T d1sq9a_          89 GDLLFYRITREDETKKVIFE--------------------------------------------------KLD-------  111 (393)
T ss_dssp             SCEEEEEEEECTTTCCEEEE--------------------------------------------------EEC-------
T ss_pred             CcEEEEEccCCCceeeeecc--------------------------------------------------ccc-------
Confidence            99999998765433222100                                                  000       


Q ss_pred             eecCCCCCCCCeEEEEEccC-----CCEEEEEecCCcEEEEECCCCccccccc----------cccccccCCCCcCEEEE
Q 005656          194 ILRPCPENPTAVKACTISAC-----GNFAVLGTAGGWIERFNLQSGISRGSYL----------DMSERSNYAHNGEVVGV  258 (685)
Q Consensus       194 ~~~~~~~~~~~v~~~~~s~~-----g~~l~~g~~dg~i~~~d~~~~~~~~~~~----------~~~~~~~~~h~~~v~~l  258 (685)
                       ......+...+..+++.++     +.++++++.||.+.+|++..........          .........+...+.++
T Consensus       112 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  190 (393)
T d1sq9a_         112 -LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSV  190 (393)
T ss_dssp             -CSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEE
T ss_pred             -eeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEE
Confidence             0000022344556666554     4788999999999999986432211100          00111223566778999


Q ss_pred             EEcCCCCEEEEEECCCeEEEEECCCCceEEEee-------cCCceeEEEEeecCCEEEEEeCCC---eEEEEEcCCCeeE
Q 005656          259 ACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE-------VGCSLVKIVYHRVNGLLATVADDL---VIRLFDVVALRMV  328 (685)
Q Consensus       259 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~dg---~I~i~d~~~~~~~  328 (685)
                      +|+|++ +|++|+.||+|++||+.+++.+..+.       +..+|.+++|+|+|++|++|+.|+   .|++||+.+++.+
T Consensus       191 ~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~  269 (393)
T d1sq9a_         191 DISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERI  269 (393)
T ss_dssp             EECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred             EECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceee
Confidence            999987 88999999999999999998876654       347899999999999999999887   5999999999888


Q ss_pred             EEEe-------------cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccc-e----EEEEEcCCCCe
Q 005656          329 RKFE-------------GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-I----TALSLSPNMDV  390 (685)
Q Consensus       329 ~~~~-------------~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v----~~v~~spdg~~  390 (685)
                      ..+.             +|.+.|++++|+||+++|+|||.|++|++||+.+|+++..+..|.. |    ..++|+|+|..
T Consensus       270 ~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~  349 (393)
T d1sq9a_         270 GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDS  349 (393)
T ss_dssp             EEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCB
T ss_pred             eeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCE
Confidence            8774             7999999999999999999999999999999999999999987754 4    36899999999


Q ss_pred             EEEEE
Q 005656          391 LATAH  395 (685)
Q Consensus       391 Lat~~  395 (685)
                      +++++
T Consensus       350 ~~~~~  354 (393)
T d1sq9a_         350 LAEPG  354 (393)
T ss_dssp             CSSCC
T ss_pred             EEEcc
Confidence            87664

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.97  E-value=5.9e-30  Score=262.25  Aligned_cols=309  Identities=15%  Similarity=0.082  Sum_probs=236.9

Q ss_pred             EEEEcc-CCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCC--cEEEEEecCCCCCCc
Q 005656            7 ALAFSS-DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADN--SIKMWIFDTTDGDPR   83 (685)
Q Consensus         7 ~l~fsp-dg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~--~v~iWd~~~~~~~~~   83 (685)
                      +-.||| ||+ ++|+++ +|.|++||+.++...+.   +|...|.+++|+|||++|++++.+.  .|++||...+    .
T Consensus         7 ~~~fSP~dG~-~~a~~~-~g~v~v~d~~~~~~~~~---~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~----~   77 (360)
T d1k32a3           7 AEDFSPLDGD-LIAFVS-RGQAFIQDVSGTYVLKV---PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTG----K   77 (360)
T ss_dssp             EEEEEECGGG-CEEEEE-TTEEEEECTTSSBEEEC---SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTC----C
T ss_pred             cccccCCCCC-EEEEEE-CCeEEEEECCCCcEEEc---cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCC----c
Confidence            467999 999 788776 58999999998877653   6999999999999999998876653  7999988765    2


Q ss_pred             eeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccccc
Q 005656           84 LLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIR  163 (685)
Q Consensus        84 ~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (685)
                       ...+..|...|.+++|+|+|++|++++.++.+++|++.+++....+.                                
T Consensus        78 -~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------  124 (360)
T d1k32a3          78 -AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER--------------------------------  124 (360)
T ss_dssp             -EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--------------------------------
T ss_pred             -EEEeeCCCceEEeeeecccccccceeccccccccccccccceeeeee--------------------------------
Confidence             44567899999999999999999999999999999998776554432                                


Q ss_pred             ccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe----------cCCcEEEEECCC
Q 005656          164 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT----------AGGWIERFNLQS  233 (685)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~----------~dg~i~~~d~~~  233 (685)
                                                          .+...+.+++|+|+|++++.+.          .++.+++|++.+
T Consensus       125 ------------------------------------~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~  168 (360)
T d1k32a3         125 ------------------------------------SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG  168 (360)
T ss_dssp             ------------------------------------CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT
T ss_pred             ------------------------------------cccccccchhhccceeeeeeeccccccceeeccccceeeecccc
Confidence                                                4456778899999999998654          344689999998


Q ss_pred             CccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceE-------EEeec-CCceeEEEEeecC
Q 005656          234 GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLK-------SRWEV-GCSLVKIVYHRVN  305 (685)
Q Consensus       234 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-------~~~~~-~~~i~~~~~~~~~  305 (685)
                      +......         .|...+.+++|+|+|++|++++.++.+.+|+.......       ..+.. ......+.+++++
T Consensus       169 ~~~~~~~---------~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  239 (360)
T d1k32a3         169 RKIFAAT---------TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRS  239 (360)
T ss_dssp             TEEEECS---------CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGG
T ss_pred             Cceeeec---------ccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCc
Confidence            8765443         67778899999999999999999999999997654332       11111 2334445667777


Q ss_pred             CEEEEEeCCC-----eEEEEEcCCCeeEEEEecCCCCeEEEEEcCCC---CEEEEEeCCCcEEEEEcCCCceeeEEeecc
Q 005656          306 GLLATVADDL-----VIRLFDVVALRMVRKFEGHTDRITDFCFSEDG---KWLLSSGMDGSLRIWDVILARQIDAIHVDV  377 (685)
Q Consensus       306 ~~l~~~~~dg-----~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg---~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~  377 (685)
                      ..++++..+.     .+..++...+. ...+..+.+.+..+.+.+.+   .++++++.++.|++||+.+++...   +..
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~---~~~  315 (360)
T d1k32a3         240 MTSEAGEYDLNDMYKRSSPINVDPGD-YRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE---VKN  315 (360)
T ss_dssp             GSCCCCCCCCTTGGGGCEECSCCCBC-EEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE---EEE
T ss_pred             CcccccceeecccccceeecccCcCc-eeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEE---ecC
Confidence            7665554332     24444444444 34455566667777766654   467888999999999999876532   234


Q ss_pred             ceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          378 SITALSLSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       378 ~v~~v~~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                      .|.+++|||||++|++++.|| .|++|+..
T Consensus       316 ~v~~~~~SpDG~~l~~~~~Dg-~i~v~d~~  344 (360)
T d1k32a3         316 NLTDLRLSADRKTVMVRKDDG-KIYTFPLE  344 (360)
T ss_dssp             EEEEEEECTTSCEEEEEETTS-CEEEEESS
T ss_pred             CcCEEEECCCCCEEEEEECCC-eEEEEECC
Confidence            599999999999999999997 99999854

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.96  E-value=2.2e-27  Score=249.42  Aligned_cols=333  Identities=12%  Similarity=0.037  Sum_probs=241.1

Q ss_pred             EccCCCCE-EEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCC-ceeEe
Q 005656           10 FSSDGQPL-LASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP-RLLRF   87 (685)
Q Consensus        10 fspdg~~~-latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~-~~~~~   87 (685)
                      ++.|.+.+ +++++.||.|+|||+.+++.+.++. .| ..+.+++|+|||++|++++.|++|++||+.++.... ..+..
T Consensus        26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~-~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~  103 (426)
T d1hzua2          26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVID-TG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI  103 (426)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEE-CC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC
T ss_pred             ccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEe-CC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeC
Confidence            45554434 5778889999999999999999998 55 468999999999999999999999999998874321 12233


Q ss_pred             cccCCCCCeEEEEecCCCEEEEE-eCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccC
Q 005656           88 RSGHSAPPLCIRFYANGRHILSA-GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERD  166 (685)
Q Consensus        88 ~~~h~~~v~~i~~~~~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (685)
                      ..+|...+.++.|+|||++++++ ..++.+++||..++............                              
T Consensus       104 ~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~------------------------------  153 (426)
T d1hzua2         104 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT------------------------------  153 (426)
T ss_dssp             CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEEC------------------------------
T ss_pred             CCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCC------------------------------
Confidence            44666777788889999987555 57899999999888765554311000                              


Q ss_pred             CcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec-CCcEEEEECCCCccccccccccc
Q 005656          167 WCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA-GGWIERFNLQSGISRGSYLDMSE  245 (685)
Q Consensus       167 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-dg~i~~~d~~~~~~~~~~~~~~~  245 (685)
                                             .    .............+..++++..++.... .+.+.+++...+......     
T Consensus       154 -----------------------~----~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----  201 (426)
T d1hzua2         154 -----------------------V----DTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVT-----  201 (426)
T ss_dssp             -----------------------S----SSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEE-----
T ss_pred             -----------------------c----cceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeE-----
Confidence                                   0    0000022445677788888888777655 466777777665433221     


Q ss_pred             cccCCCCcCEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCceEEEeecC---CceeEEEEeecCC---EEEEEeCCCeEE
Q 005656          246 RSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNG---LLATVADDLVIR  318 (685)
Q Consensus       246 ~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~~~~~~---~l~~~~~dg~I~  318 (685)
                        ...+...+..+.++|++++++++. .+..+.+|+..+++........   .......+...+.   ..+....|+.+.
T Consensus       202 --~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  279 (426)
T d1hzua2         202 --SIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSIS  279 (426)
T ss_dssp             --EEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEE
T ss_pred             --EeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEE
Confidence              116778899999999999887776 5667999999999988777654   3333444444443   222334578888


Q ss_pred             EEEcCC-------CeeEEEEecCCCCeEEEEEcCCCCEEEE-------EeCCCcEEEEEcCCCceeeEEe----------
Q 005656          319 LFDVVA-------LRMVRKFEGHTDRITDFCFSEDGKWLLS-------SGMDGSLRIWDVILARQIDAIH----------  374 (685)
Q Consensus       319 i~d~~~-------~~~~~~~~~h~~~I~~l~~spdg~~l~s-------~s~Dg~I~iwd~~~~~~i~~~~----------  374 (685)
                      +|+...       ++....+.+|...+..++|+|||++|++       ++.|++|+|||+.+++....+.          
T Consensus       280 ~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~  359 (426)
T d1hzua2         280 LIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGE  359 (426)
T ss_dssp             EEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCS
T ss_pred             EeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCC
Confidence            888654       4788899999999999999999999994       4568899999999998776652          


Q ss_pred             eccceEEEEEcCCCCeEEEEE----eCCCeEEEEEcCC
Q 005656          375 VDVSITALSLSPNMDVLATAH----VDQNGVYLWVNRC  408 (685)
Q Consensus       375 ~~~~v~~v~~spdg~~Lat~~----~d~~~I~lW~~~~  408 (685)
                      +...|.+++|||||++++++.    .+++.|+|||.+.
T Consensus       360 ~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T  397 (426)
T d1hzua2         360 GAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKT  397 (426)
T ss_dssp             SCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTT
T ss_pred             CCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCC
Confidence            233499999999999886543    2234899998654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.96  E-value=2.1e-28  Score=250.54  Aligned_cols=295  Identities=10%  Similarity=0.004  Sum_probs=215.8

Q ss_pred             CCCcEEEEEEccCCCCEEEEEe-CCC-cEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCC
Q 005656            1 MRGAVTALAFSSDGQPLLASGA-SSG-VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT   78 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~-~dg-~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~   78 (685)
                      |.+.|++++|+|||+ +|++++ .+| .|++||+.+++.... . .|...|.+++|+|++++|++++.++.+++|+++..
T Consensus        41 ~~~~v~~~~~spDg~-~l~~~~~~~g~~v~v~d~~~~~~~~~-~-~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~  117 (360)
T d1k32a3          41 EPLRIRYVRRGGDTK-VAFIHGTREGDFLGIYDYRTGKAEKF-E-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG  117 (360)
T ss_dssp             CCSCEEEEEECSSSE-EEEEEEETTEEEEEEEETTTCCEEEC-C-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             CCCCEEEEEECCCCC-EEEEEEcCCCCEEEEEECCCCcEEEe-e-CCCceEEeeeecccccccceecccccccccccccc
Confidence            788999999999999 666554 443 799999998876644 4 79999999999999999999999999999999876


Q ss_pred             CCCCceeEecccCCCCCeEEEEecCCCEEEEEeC----------CCceEEEEeecCceeeEechhhHHHHHhhccccccc
Q 005656           79 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ----------DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEE  148 (685)
Q Consensus        79 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (685)
                          +.......|...+.+++|+|+|++|+.++.          ++.+++|++.+++.....                  
T Consensus       118 ----~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~------------------  175 (360)
T d1k32a3         118 ----KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT------------------  175 (360)
T ss_dssp             ----CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS------------------
T ss_pred             ----ceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeec------------------
Confidence                566677789999999999999999986643          334666666544322111                  


Q ss_pred             cccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEE
Q 005656          149 LKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIER  228 (685)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~  228 (685)
                                                                         .+...+..++|+|+|++|++++.++.+.+
T Consensus       176 ---------------------------------------------------~~~~~~~~~~~spdg~~l~~~s~~~~~~~  204 (360)
T d1k32a3         176 ---------------------------------------------------TENSHDYAPAFDADSKNLYYLSYRSLDPS  204 (360)
T ss_dssp             ---------------------------------------------------CSSSBEEEEEECTTSCEEEEEESCCCCCE
T ss_pred             ---------------------------------------------------ccccccccccccCCCCEEEEEeCCCceEc
Confidence                                                               44567888999999999999999999999


Q ss_pred             EECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCC-----eEEEEECCCCceEEEeecCCceeEEEEee
Q 005656          229 FNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG-----DIKVWDFKGRDLKSRWEVGCSLVKIVYHR  303 (685)
Q Consensus       229 ~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~~~~~i~~~~~~~  303 (685)
                      |+............. ......|...+..+.+++++..++++..+.     .+..++...+...........+..+.+.+
T Consensus       205 ~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (360)
T d1k32a3         205 PDRVVLNFSFEVVSK-PFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPV  283 (360)
T ss_dssp             ECSSSSCEECCSCBE-EEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCC
T ss_pred             ccccccceeeccccc-eEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEe
Confidence            997655432111000 000113444445556667666655544332     24444455555544444445555555555


Q ss_pred             cCC---EEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeec
Q 005656          304 VNG---LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVD  376 (685)
Q Consensus       304 ~~~---~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~  376 (685)
                      .+.   +++.++.++.|++||+.+++..    .|.+.|.+++|||||++|++++.||.|++||+.+++...++..+
T Consensus       284 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~~d  355 (360)
T d1k32a3         284 HGEFAAYYQGAPEKGVLLKYDVKTRKVT----EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETD  355 (360)
T ss_dssp             CCSHHHHHHCCCCCEEEEEEETTTCCEE----EEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEECCCC
T ss_pred             cCCCeeEEEecCCCCEEEEEECCCCeEE----EecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceEEEec
Confidence            443   6788888999999999987643    24456999999999999999999999999999999887776543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.95  E-value=1e-24  Score=216.90  Aligned_cols=276  Identities=10%  Similarity=0.102  Sum_probs=224.1

Q ss_pred             EEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEE-EEecCCCcEEEEEecCCCCCCceeEecccCCCCC
Q 005656           17 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL-MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP   95 (685)
Q Consensus        17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l-~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v   95 (685)
                      ..++++.+++|.|||+++++.+.++.  ....+..++|+|||++| ++++.++.|++||+.++    +.+..+..|. .+
T Consensus         4 ~yV~~~~~~~v~v~D~~t~~~~~~i~--~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~----~~~~~~~~~~-~~   76 (301)
T d1l0qa2           4 AYIANSESDNISVIDVTSNKVTATIP--VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN----NVIATVPAGS-SP   76 (301)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT----EEEEEEECSS-SE
T ss_pred             EEEEECCCCEEEEEECCCCeEEEEEE--CCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC----ceeeeeeccc-cc
Confidence            45677889999999999999999987  34567899999999977 56778999999999876    6666666665 46


Q ss_pred             eEEEEecCCCEEEE-EeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEE
Q 005656           96 LCIRFYANGRHILS-AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH  174 (685)
Q Consensus        96 ~~i~~~~~~~~l~s-~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (685)
                      ..+.|++++.+++. +..++.+.+|+..+++....+                                            
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------  112 (301)
T d1l0qa2          77 QGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV--------------------------------------------  112 (301)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE--------------------------------------------
T ss_pred             cccccccccccccccccccceeeecccccceeeeec--------------------------------------------
Confidence            89999999886665 456778999998877655544                                            


Q ss_pred             cCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEE-ecCCcEEEEECCCCccccccccccccccCCCCc
Q 005656          175 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAGGWIERFNLQSGISRGSYLDMSERSNYAHNG  253 (685)
Q Consensus       175 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~  253 (685)
                                               .......+++++|+|+.++++ ..++.+.+|+..++.....+         .+..
T Consensus       113 -------------------------~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~  158 (301)
T d1l0qa2         113 -------------------------KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV---------SVGR  158 (301)
T ss_dssp             -------------------------ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE---------ECCS
T ss_pred             -------------------------cccccceEEEeecCCCeeeeeeccccceeeeeccccceeeec---------ccCC
Confidence                                     224557889999999987654 55778999999998877665         4456


Q ss_pred             CEEEEEEcCCCCEEEEEECC-CeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeC---CCeEEEEEcCCCeeEE
Q 005656          254 EVVGVACDSTNTLMISAGYH-GDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVAD---DLVIRLFDVVALRMVR  329 (685)
Q Consensus       254 ~v~~l~~~~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~I~i~d~~~~~~~~  329 (685)
                      .+..+.++|++..+++++.+ +.+.+|+............+..+..+++++++..+++++.   ++.|++||+.+++.+.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~  238 (301)
T d1l0qa2         159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITA  238 (301)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEE
T ss_pred             CceEEEeeccccceeeecccccccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEE
Confidence            68899999999988887754 6788898888888888888888899999999997776643   4689999999999998


Q ss_pred             EEecCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCceeeEEeeccc
Q 005656          330 KFEGHTDRITDFCFSEDGKWL-LSSGMDGSLRIWDVILARQIDAIHVDVS  378 (685)
Q Consensus       330 ~~~~h~~~I~~l~~spdg~~l-~s~s~Dg~I~iwd~~~~~~i~~~~~~~~  378 (685)
                      .+..+ ..+.+++|+|||++| ++++.|++|++||+.+++.+..+.....
T Consensus       239 ~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~vg~~  287 (301)
T d1l0qa2         239 RIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGKN  287 (301)
T ss_dssp             EEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred             EEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeCCCC
Confidence            88754 568999999999987 5777899999999999999988875443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.94  E-value=7.1e-26  Score=237.41  Aligned_cols=362  Identities=7%  Similarity=-0.012  Sum_probs=252.4

Q ss_pred             EEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCC-ceeEecccCCCCC
Q 005656           17 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP-RLLRFRSGHSAPP   95 (685)
Q Consensus        17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~-~~~~~~~~h~~~v   95 (685)
                      ++++.+.+|.|.|||..+++++..+. .| ..+..++|||||+++++++.|++|++||+.+..... ..+....+|.+.+
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~-~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~  111 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLD-TG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIE  111 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEE-CS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEe-CC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeE
Confidence            45889999999999999999999998 44 369999999999999999999999999998764321 1233344566667


Q ss_pred             eEEEEecCCCEE-EEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEE
Q 005656           96 LCIRFYANGRHI-LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH  174 (685)
Q Consensus        96 ~~i~~~~~~~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (685)
                      .+..|+|||++| ++++.+++|++||..+++....+...........+      ...+....+    ....+....+...
T Consensus       112 ~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~------~~~~~~~~v----~~s~dg~~~~vs~  181 (432)
T d1qksa2         112 TSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEY------HPEPRVAAI----LASHYRPEFIVNV  181 (432)
T ss_dssp             ECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCE------ESCCCEEEE----EECSSSSEEEEEE
T ss_pred             EecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceec------cCCCceeEE----EECCCCCEEEEEE
Confidence            777788999986 67788999999999998877766422110000000      000000000    1123444556666


Q ss_pred             cCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecC-CcEEEEECCCCccccccccccccccCCCCc
Q 005656          175 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG-GWIERFNLQSGISRGSYLDMSERSNYAHNG  253 (685)
Q Consensus       175 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d-g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~  253 (685)
                      .+.+.+.+|+............   .....+..++++|+|+++++++.+ +.+.++|..++.....+....   ...|..
T Consensus       182 ~~~~~i~~~d~~~~~~~~~~~i---~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~---~~~~~~  255 (432)
T d1qksa2         182 KETGKILLVDYTDLNNLKTTEI---SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGG---QTPHPG  255 (432)
T ss_dssp             TTTTEEEEEETTCSSEEEEEEE---ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS---SSBCCT
T ss_pred             ccCCeEEEEEccCCCcceEEEE---cccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCc---cccccC
Confidence            7788899998776433221111   234567899999999988777654 578899999887765543211   113445


Q ss_pred             CEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEe
Q 005656          254 EVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE  332 (685)
Q Consensus       254 ~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~  332 (685)
                      ......+...+...++.. .++.+.+|+......   ..+...+....++|++..+++++.+...++|+..+..      
T Consensus       256 ~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~---~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~------  326 (432)
T d1qksa2         256 RGANFVHPTFGPVWATSHMGDDSVALIGTDPEGH---PDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN------  326 (432)
T ss_dssp             TCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTC---TTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC------
T ss_pred             cccceecCCCCceecccccCCceEEecccccccc---cccccEEEEEEEcCCCCeEEEEecCCccceeecccCC------
Confidence            555556655555555443 478999998765432   1233567888999999999999999999999866543      


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEe----CCCeEEEEEcCC
Q 005656          333 GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHV----DQNGVYLWVNRC  408 (685)
Q Consensus       333 ~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~----d~~~I~lW~~~~  408 (685)
                      .|......+++ ||++.|++++.|+.+++|++.++..+.  .++..|.+++|||||++++++..    +++.|.|||.+.
T Consensus       327 ~~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~l~--~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T  403 (432)
T d1qksa2         327 PEAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAGIT--EGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKT  403 (432)
T ss_dssp             SSHHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHHTCC--SSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred             CCCCeeeEEEE-EechhhcccccCCceEecccccccccC--CCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCC
Confidence            24333445555 899999999999999999987664332  45556999999999999877753    334899999654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.92  E-value=1.4e-22  Score=201.14  Aligned_cols=263  Identities=11%  Similarity=0.114  Sum_probs=212.6

Q ss_pred             EEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEE-EEeCCCceEEEEeecCceeeEechhhHHHHH
Q 005656           61 LMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHIL-SAGQDRAFRLFSVIQDQQSRELSQRHVAKRA  139 (685)
Q Consensus        61 l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~  139 (685)
                      .++++.|++|.+||+.++    +.+..+.. ...+..++|+|||++|+ +++.++.|++||+.+++....+.        
T Consensus         5 yV~~~~~~~v~v~D~~t~----~~~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~--------   71 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSN----KVTATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP--------   71 (301)
T ss_dssp             EEEETTTTEEEEEETTTT----EEEEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE--------
T ss_pred             EEEECCCCEEEEEECCCC----eEEEEEEC-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeee--------
Confidence            356778999999999887    66666543 34578999999999875 56678999999998887665542        


Q ss_pred             hhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEE
Q 005656          140 RKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL  219 (685)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  219 (685)
                                                                                   ....+..+++++++.++++
T Consensus        72 -------------------------------------------------------------~~~~~~~~~~~~~~~~~~~   90 (301)
T d1l0qa2          72 -------------------------------------------------------------AGSSPQGVAVSPDGKQVYV   90 (301)
T ss_dssp             -------------------------------------------------------------CSSSEEEEEECTTSSEEEE
T ss_pred             -------------------------------------------------------------ccccccccccccccccccc
Confidence                                                                         1234678999999987665


Q ss_pred             -EecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEE-ECCCeEEEEECCCCceEEEeecCCcee
Q 005656          220 -GTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA-GYHGDIKVWDFKGRDLKSRWEVGCSLV  297 (685)
Q Consensus       220 -g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~i~  297 (685)
                       +..++.+.+|+..++.....+         .+.....++.++|++..++.+ ..++.+.+|+..++.....+.....+.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (301)
T d1l0qa2          91 TNMASSTLSVIDTTSNTVAGTV---------KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPK  161 (301)
T ss_dssp             EETTTTEEEEEETTTTEEEEEE---------ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEE
T ss_pred             cccccceeeecccccceeeeec---------cccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCce
Confidence             456678999999998877665         455678899999999877554 568899999999999999998888899


Q ss_pred             EEEEeecCCEEEEEeCC-CeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEe---CCCcEEEEEcCCCceeeEE
Q 005656          298 KIVYHRVNGLLATVADD-LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG---MDGSLRIWDVILARQIDAI  373 (685)
Q Consensus       298 ~~~~~~~~~~l~~~~~d-g~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s---~Dg~I~iwd~~~~~~i~~~  373 (685)
                      .+.++|+++.+++++.+ +.+.+|+....+....+..+ ..+..++|+++++.++.++   .+++|++||+.+++.+..+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~  240 (301)
T d1l0qa2         162 GIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI  240 (301)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEE
T ss_pred             EEEeeccccceeeecccccccccccccceeeeeccccc-CCcceeeccccccccccccccceeeeeeeeecCCCeEEEEE
Confidence            99999999988777655 67888888888877777644 5578899999999887654   3468999999999999999


Q ss_pred             eeccceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          374 HVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       374 ~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                      ..+..+.+++|+|||++|++++.+++.|++|+..
T Consensus       241 ~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~  274 (301)
T d1l0qa2         241 PVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTA  274 (301)
T ss_dssp             ECCSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             cCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECC
Confidence            8888899999999999986665554599999854

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.92  E-value=3.4e-24  Score=217.41  Aligned_cols=294  Identities=9%  Similarity=0.019  Sum_probs=204.2

Q ss_pred             EEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEE-EEecCCCcEEEEEecCCCCCCceeE
Q 005656            8 LAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL-MSASADNSIKMWIFDTTDGDPRLLR   86 (685)
Q Consensus         8 l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l-~s~s~D~~v~iWd~~~~~~~~~~~~   86 (685)
                      ++|+++|+ +|++++.++.|.|||+.+++.+.++...|...+.+++|+|||+++ ++++.++.|.+||+.++    +.+.
T Consensus         2 ~a~~~~~~-~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~----~~~~   76 (346)
T d1jmxb_           2 PALKAGHE-YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC----KNTF   76 (346)
T ss_dssp             CCCCTTCE-EEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT----EEEE
T ss_pred             ccCCCCCc-EEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccC----eeee
Confidence            57999999 999999999999999999999998875677788999999999976 56667899999999876    4443


Q ss_pred             eccc------CCCCCeEEEEecCCCEEEEEeC------------CCceEEEEeecCceeeEechhhHHHHHhhccccccc
Q 005656           87 FRSG------HSAPPLCIRFYANGRHILSAGQ------------DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEE  148 (685)
Q Consensus        87 ~~~~------h~~~v~~i~~~~~~~~l~s~s~------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (685)
                      ....      +...+..++|+|||+++++++.            ++.+.+|+..+++....+.                 
T Consensus        77 ~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----------------  139 (346)
T d1jmxb_          77 HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR-----------------  139 (346)
T ss_dssp             EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSE-----------------
T ss_pred             eecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEE-----------------
Confidence            3322      2235678999999999987764            3445555544433221110                 


Q ss_pred             cccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEE
Q 005656          149 LKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIER  228 (685)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~  228 (685)
                                                                     ..  ..+..+..+.+++++..++.   ++.+.+
T Consensus       140 -----------------------------------------------~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~  167 (346)
T d1jmxb_         140 -----------------------------------------------TF--PMPRQVYLMRAADDGSLYVA---GPDIYK  167 (346)
T ss_dssp             -----------------------------------------------EE--ECCSSCCCEEECTTSCEEEE---SSSEEE
T ss_pred             -----------------------------------------------ee--eccCceEEEEecCCCEEEEe---CCcceE
Confidence                                                           00  11233445566666665554   356888


Q ss_pred             EECCCCccccccccccccc-------------cCCCCcCEE----EEEEcCCCCEEEEEECCCeEEEEECCCCceEEEe-
Q 005656          229 FNLQSGISRGSYLDMSERS-------------NYAHNGEVV----GVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRW-  290 (685)
Q Consensus       229 ~d~~~~~~~~~~~~~~~~~-------------~~~h~~~v~----~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-  290 (685)
                      |++.++.....+.......             .......+.    ...+.+....++++..++.+.+||+.++...... 
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (346)
T d1jmxb_         168 MDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF  247 (346)
T ss_dssp             ECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEE
T ss_pred             EEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEe
Confidence            8888877665542110000             000011111    1112223344555566778999999988765543 


Q ss_pred             -ecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCce
Q 005656          291 -EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ  369 (685)
Q Consensus       291 -~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~  369 (685)
                       .+...+..+.+++++.+++.+.. +.|++||..+++.++.+. +...+.+++|||||++|++++.|+.|+|||+.+++.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~  325 (346)
T d1jmxb_         248 ADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEK  325 (346)
T ss_dssp             EECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEE
T ss_pred             ecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCE
Confidence             34467888899999887776654 579999999999998886 456799999999999999999999999999999999


Q ss_pred             eeEEeecc
Q 005656          370 IDAIHVDV  377 (685)
Q Consensus       370 i~~~~~~~  377 (685)
                      +..+..+.
T Consensus       326 i~~i~~p~  333 (346)
T d1jmxb_         326 VKNIKLPG  333 (346)
T ss_dssp             EEEEECSS
T ss_pred             EEEEECCC
Confidence            99988654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.92  E-value=1.7e-23  Score=211.41  Aligned_cols=294  Identities=10%  Similarity=0.029  Sum_probs=204.3

Q ss_pred             EEEEEeCCCcEEEEeCCCCeeeEEeecc-cccCeeEEEEeCCCcEE-EEecCCCcEEEEEecCCCCCCceeEecccC---
Q 005656           17 LLASGASSGVISIWNLEKRRLQSVIREA-HDNAIISLHFFANEPVL-MSASADNSIKMWIFDTTDGDPRLLRFRSGH---   91 (685)
Q Consensus        17 ~latg~~dg~I~vwd~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~l-~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h---   91 (685)
                      ++++++.|+.|.|||+++++.+..+... +...+.+++|+|||+++ ++++.++.|.+||+.++    +.+.....+   
T Consensus         3 ~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~----~~~~~~~~~~~~   78 (337)
T d1pbyb_           3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG----ETLGRIDLSTPE   78 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC----CEEEEEECCBTT
T ss_pred             EEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCC----cEEEEEecCCCc
Confidence            8999999999999999999999988732 34568899999999987 56778999999999886    555444333   


Q ss_pred             --CCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcc
Q 005656           92 --SAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCN  169 (685)
Q Consensus        92 --~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (685)
                        ...+..++|+|+++++++++.+.....|.....                                             
T Consensus        79 ~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~---------------------------------------------  113 (337)
T d1pbyb_          79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQ---------------------------------------------  113 (337)
T ss_dssp             EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEEC---------------------------------------------
T ss_pred             ccccceeeEEEcCCCcEEEEeecCCcceeeecccc---------------------------------------------
Confidence              345678999999999998875433332222111                                             


Q ss_pred             eEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccc--
Q 005656          170 VVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERS--  247 (685)
Q Consensus       170 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~--  247 (685)
                             ...+.+|+..........     .....+..++++|+|+++++++.  .+.+||..++.....+.......  
T Consensus       114 -------~~~~~~~d~~~~~~~~~~-----~~~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~  179 (337)
T d1pbyb_         114 -------PTRVALYDAETLSRRKAF-----EAPRQITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAET  179 (337)
T ss_dssp             -------CCEEEEEETTTTEEEEEE-----ECCSSCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEEECSTTTTTTT
T ss_pred             -------ccceeeccccCCeEEEec-----cccCCceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEEeecCCccccc
Confidence                   112223333322211111     22345678899999999999864  57889998887665442111000  


Q ss_pred             -----------c--CCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEe--ecCCceeEEEEeecCCEEEEEe
Q 005656          248 -----------N--YAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRW--EVGCSLVKIVYHRVNGLLATVA  312 (685)
Q Consensus       248 -----------~--~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~  312 (685)
                                 .  ..+...+.......+......++.++.+.+|+..++......  .....+..+.++|++.+++++ 
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  258 (337)
T d1pbyb_         180 YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-  258 (337)
T ss_dssp             BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-
T ss_pred             eecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc-
Confidence                       0  000011111111222222233344567999999988765432  334677888999999988776 


Q ss_pred             CCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeec
Q 005656          313 DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVD  376 (685)
Q Consensus       313 ~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~  376 (685)
                       ++.|++||+.+++.+..+. +...+.+++|+|||++|++++.|++|+|||..+++.+..+..+
T Consensus       259 -~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~~  320 (337)
T d1pbyb_         259 -YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             -ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred             -cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEECC
Confidence             4899999999999999886 6677899999999999999999999999999999999988754

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=1.3e-23  Score=220.31  Aligned_cols=318  Identities=10%  Similarity=-0.019  Sum_probs=218.4

Q ss_pred             CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEE--ee--cccccCeeEEEEeCCCcEEEE-ecCCCcEEEEEecC
Q 005656            3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSV--IR--EAHDNAIISLHFFANEPVLMS-ASADNSIKMWIFDT   77 (685)
Q Consensus         3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~--~~--~~h~~~V~~l~~sp~~~~l~s-~s~D~~v~iWd~~~   77 (685)
                      ..+.+++|||||+ ++++++.||.|++||+.+++....  +.  .+|.+.+.+++|+|||+++++ +..++++++||...
T Consensus        62 ~~~~~vafSPDGk-~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~  140 (426)
T d1hzua2          62 YAVHISRMSASGR-YLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET  140 (426)
T ss_dssp             SSEEEEEECTTSC-EEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT
T ss_pred             CCeeEEEECCCCC-EEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCc
Confidence            4589999999999 899999999999999998875432  22  257777888899999998754 45789999999887


Q ss_pred             CCCCCceeEecccCCCCCeEEEEecCCC-EEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceee
Q 005656           78 TDGDPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA  156 (685)
Q Consensus        78 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (685)
                      .    .+.....+|...+..+.+.+++. ..++++.|+...++.........                            
T Consensus       141 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~----------------------------  188 (426)
T d1hzua2         141 L----EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVL----------------------------  188 (426)
T ss_dssp             C----CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEE----------------------------
T ss_pred             c----ceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEE----------------------------
Confidence            7    66777777877777778877765 34556667766666543322211                            


Q ss_pred             eecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec-CCcEEEEECCCCc
Q 005656          157 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA-GGWIERFNLQSGI  235 (685)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-dg~i~~~d~~~~~  235 (685)
                                               .++..........   .......+..+.++|++++++++.. +..+.+++..++.
T Consensus       189 -------------------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~  240 (426)
T d1hzua2         189 -------------------------LVNYKDIDNLTVT---SIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRR  240 (426)
T ss_dssp             -------------------------EEECSSSSSCEEE---EEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTE
T ss_pred             -------------------------EEEeccccceeeE---EeccCCccEeeeECCCCcEEEeeeecccceeeeeccccc
Confidence                                     1111111000000   0034566889999999999888765 4578899999988


Q ss_pred             cccccccccccccCCCCcCEEEEEEcCCCC-EE--EEEECCCeEEEEECCC-------CceEEEeecC-CceeEEEEeec
Q 005656          236 SRGSYLDMSERSNYAHNGEVVGVACDSTNT-LM--ISAGYHGDIKVWDFKG-------RDLKSRWEVG-CSLVKIVYHRV  304 (685)
Q Consensus       236 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l--~s~s~dg~i~iwd~~~-------~~~~~~~~~~-~~i~~~~~~~~  304 (685)
                      ........      .+........+...+. .+  ++.+.|+.+.+|+...       ++....+..+ ..+..++|+|+
T Consensus       241 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPd  314 (426)
T d1hzua2         241 LSALVDVG------KTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPK  314 (426)
T ss_dssp             EEEEEECS------SCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTT
T ss_pred             EEEEeccC------CcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCC
Confidence            77655321      1111112222222222 12  2223567777777653       3556666654 67899999999


Q ss_pred             CCEEEE-------EeCCCeEEEEEcCCCeeEEEEe---------cCCCCeEEEEEcCCCCEEEEE-----eCCCcEEEEE
Q 005656          305 NGLLAT-------VADDLVIRLFDVVALRMVRKFE---------GHTDRITDFCFSEDGKWLLSS-----GMDGSLRIWD  363 (685)
Q Consensus       305 ~~~l~~-------~~~dg~I~i~d~~~~~~~~~~~---------~h~~~I~~l~~spdg~~l~s~-----s~Dg~I~iwd  363 (685)
                      +++|++       +..+++|+|||+.+++...++.         .|...|..++|||||++++.+     +.+|.|+|||
T Consensus       315 g~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D  394 (426)
T d1hzua2         315 SSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD  394 (426)
T ss_dssp             CSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEE
T ss_pred             CceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEE
Confidence            999995       4457899999999987765543         456679999999999977533     3578899999


Q ss_pred             cCCCceeeEEeeccceEEEEEcCCCCeEE
Q 005656          364 VILARQIDAIHVDVSITALSLSPNMDVLA  392 (685)
Q Consensus       364 ~~~~~~i~~~~~~~~v~~v~~spdg~~La  392 (685)
                      ..+++.+..+..+.     .++|+|+|-+
T Consensus       395 ~~T~k~~~~i~~~~-----~~tp~Gk~~~  418 (426)
T d1hzua2         395 DKTLKLKAVVKDPR-----LITPTGKFNV  418 (426)
T ss_dssp             TTTTEEEEEECCTT-----CCSEEEEEEH
T ss_pred             CCCCeEEEEECCCC-----ccCCCceEeE
Confidence            99999998887654     3467777643

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.91  E-value=9.4e-24  Score=221.11  Aligned_cols=327  Identities=9%  Similarity=-0.059  Sum_probs=232.6

Q ss_pred             cEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCee--eEEee--cccccCeeEEEEeCCCcEE-EEecCCCcEEEEEecCC
Q 005656            4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRL--QSVIR--EAHDNAIISLHFFANEPVL-MSASADNSIKMWIFDTT   78 (685)
Q Consensus         4 ~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~--~~~~~--~~h~~~V~~l~~sp~~~~l-~s~s~D~~v~iWd~~~~   78 (685)
                      .+..++|||||+ ++++++.||.|.+||+.+++.  ...+.  .+|.+.+.+..|+|||++| ++++.+++|++||..++
T Consensus        63 ~~~~v~fSpDG~-~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~  141 (432)
T d1qksa2          63 AVHISRLSASGR-YLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL  141 (432)
T ss_dssp             CEEEEEECTTSC-EEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC
T ss_pred             CeeEEEECCCCC-EEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccc
Confidence            589999999999 889999999999999988663  33333  2567777888889999976 67888999999998876


Q ss_pred             CCCCceeEeccc-----------CCCCCeEEEEecCCCEEE-EEeCCCceEEEEeecCceeeEechhhHHHHHhhccccc
Q 005656           79 DGDPRLLRFRSG-----------HSAPPLCIRFYANGRHIL-SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKE  146 (685)
Q Consensus        79 ~~~~~~~~~~~~-----------h~~~v~~i~~~~~~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (685)
                          +++.....           +......+.++|+|..++ +...++.|.+|+..+.+........             
T Consensus       142 ----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~-------------  204 (432)
T d1qksa2         142 ----EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-------------  204 (432)
T ss_dssp             ----CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-------------
T ss_pred             ----cceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEc-------------
Confidence                44443333           344556788899887654 5566789999998766543322100             


Q ss_pred             cccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecC-CCCCCCCeEEEEEccCCCEEEEEe-cCC
Q 005656          147 EELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRP-CPENPTAVKACTISACGNFAVLGT-AGG  224 (685)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~~g~-~dg  224 (685)
                             ...........+++..++.+..+...+.+++............. ...+........+...+....... .++
T Consensus       205 -------~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~  277 (432)
T d1qksa2         205 -------AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDD  277 (432)
T ss_dssp             -------CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSS
T ss_pred             -------ccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCc
Confidence                   00011112234556677888888889999998776554333221 122344455556665555555544 367


Q ss_pred             cEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeec
Q 005656          225 WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRV  304 (685)
Q Consensus       225 ~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~  304 (685)
                      .|.+|+......            ..|...+....+++++..+++++.+++.++|+..+....     ......+++ ||
T Consensus       278 ~v~~~~~~~~~~------------~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~-----~~~~~sv~v-pD  339 (432)
T d1qksa2         278 SVALIGTDPEGH------------PDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPE-----AEISGSVAV-FD  339 (432)
T ss_dssp             EEEEEECCTTTC------------TTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSS-----HHHHTCEEE-EE
T ss_pred             eEEecccccccc------------cccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCC-----CCeeeEEEE-Ee
Confidence            899998765432            167778999999999999999999999999986654321     111223443 89


Q ss_pred             CCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEe-----CCCcEEEEEcCCCceeeEEeec
Q 005656          305 NGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG-----MDGSLRIWDVILARQIDAIHVD  376 (685)
Q Consensus       305 ~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s-----~Dg~I~iwd~~~~~~i~~~~~~  376 (685)
                      ++.+++++.|+.+++||+.++..   +..|...|..++|||||++++.+.     .+|.|.|||..++++...++..
T Consensus       340 g~~la~~s~d~~~k~w~~~~~~~---l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~  413 (432)
T d1qksa2         340 IKAMTGDGSDPEFKTLPIAEWAG---ITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDE  413 (432)
T ss_dssp             GGGCCCSSSCCCEEEECHHHHHT---CCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred             chhhcccccCCceEecccccccc---cCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEeEecCC
Confidence            99999999999999999876643   235778899999999999886553     4688999999999998888664

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.90  E-value=5.5e-23  Score=208.35  Aligned_cols=279  Identities=11%  Similarity=0.004  Sum_probs=208.7

Q ss_pred             EEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecc-cCCCCCeEEEEecCCCEEEE-EeCCCceEEEEeecCceeeE
Q 005656           52 LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS-GHSAPPLCIRFYANGRHILS-AGQDRAFRLFSVIQDQQSRE  129 (685)
Q Consensus        52 l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~s-~s~dg~i~vwd~~~~~~~~~  129 (685)
                      ++|++++++|++++.|++|.+||+.++    +++..+. .|...+.+++|+|||+++++ ++.++.|.+||+.+++....
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~----~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~   77 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASD----TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH   77 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTT----EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCC----CEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeee
Confidence            578999999999999999999999887    7777664 56677899999999998754 55789999999998877655


Q ss_pred             echhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEE
Q 005656          130 LSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACT  209 (685)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~  209 (685)
                      +.....                                                              .......+..++
T Consensus        78 ~~~~~~--------------------------------------------------------------~~~~~~~~~~v~   95 (346)
T d1jmxb_          78 ANLSSV--------------------------------------------------------------PGEVGRSMYSFA   95 (346)
T ss_dssp             EESCCS--------------------------------------------------------------TTEEEECSSCEE
T ss_pred             eccccc--------------------------------------------------------------ccccCCceEEEE
Confidence            431100                                                              001112345689


Q ss_pred             EccCCCEEEEEe------------cCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEE
Q 005656          210 ISACGNFAVLGT------------AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIK  277 (685)
Q Consensus       210 ~s~~g~~l~~g~------------~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~  277 (685)
                      ++|+|++++++.            .++.+.+|+..++.....+..      ......+..+.+++++..+++   ++.+.
T Consensus        96 ~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~---~~~~~  166 (346)
T d1jmxb_          96 ISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT------FPMPRQVYLMRAADDGSLYVA---GPDIY  166 (346)
T ss_dssp             ECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE------EECCSSCCCEEECTTSCEEEE---SSSEE
T ss_pred             EecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEe------eeccCceEEEEecCCCEEEEe---CCcce
Confidence            999999998775            467789999888776554421      022334556677777765554   35689


Q ss_pred             EEECCCCceEEEeecCCceeEEEEeecCCE--------------------------EEEEeCCCeEEEEEcCCCeeEE-E
Q 005656          278 VWDFKGRDLKSRWEVGCSLVKIVYHRVNGL--------------------------LATVADDLVIRLFDVVALRMVR-K  330 (685)
Q Consensus       278 iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~--------------------------l~~~~~dg~I~i~d~~~~~~~~-~  330 (685)
                      +|+..+++....+..+.....+.++|++..                          ++++..++.+.+||..++.... .
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (346)
T d1jmxb_         167 KMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQE  246 (346)
T ss_dssp             EECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEE
T ss_pred             EEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEE
Confidence            999999988887766554444555554432                          2333445578889998886554 4


Q ss_pred             EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          331 FEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       331 ~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                      +..|...+..+.+++++.+++++.. +.|++||..+++.+..+.....+.+++|||||++|++++.|+ .|++|+..
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d~-~v~v~D~~  321 (346)
T d1jmxb_         247 FADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFN-DLAVFNPD  321 (346)
T ss_dssp             EEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSS-EEEEEETT
T ss_pred             eecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeCCC-cEEEEECc
Confidence            5578888999999999988887764 579999999999999998888899999999999999999886 99999853

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=1.8e-22  Score=203.63  Aligned_cols=268  Identities=8%  Similarity=0.038  Sum_probs=203.5

Q ss_pred             cEEEEecCCCcEEEEEecCCCCCCceeEeccc--CCCCCeEEEEecCCCEEE-EEeCCCceEEEEeecCceeeEechhhH
Q 005656           59 PVLMSASADNSIKMWIFDTTDGDPRLLRFRSG--HSAPPLCIRFYANGRHIL-SAGQDRAFRLFSVIQDQQSRELSQRHV  135 (685)
Q Consensus        59 ~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~--h~~~v~~i~~~~~~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~  135 (685)
                      .++++++.|++|++||+.+.    +++..+..  +...+.+++|+|||++++ +++.++.|.+||+.+++....+.....
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~----~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~   77 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKM----AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP   77 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTT----EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT
T ss_pred             eEEEEEcCCCEEEEEECCCC----eEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCC
Confidence            58999999999999999877    66665543  455688999999999875 556799999999998877665531100


Q ss_pred             HHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCC
Q 005656          136 AKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN  215 (685)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  215 (685)
                                                                                     ......+..++++|+++
T Consensus        78 ---------------------------------------------------------------~~~~~~~~~v~~s~dg~   94 (337)
T d1pbyb_          78 ---------------------------------------------------------------EERVKSLFGAALSPDGK   94 (337)
T ss_dssp             ---------------------------------------------------------------TEEEECTTCEEECTTSS
T ss_pred             ---------------------------------------------------------------cccccceeeEEEcCCCc
Confidence                                                                           01112244689999999


Q ss_pred             EEEEEec------------CCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005656          216 FAVLGTA------------GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG  283 (685)
Q Consensus       216 ~l~~g~~------------dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~  283 (685)
                      +++++..            ++.+.+||..++.....+         .+...+.+++|+|+|+++++++  +.+.+||..+
T Consensus        95 ~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---------~~~~~~~~~~~s~dg~~l~~~~--~~~~~~d~~~  163 (337)
T d1pbyb_          95 TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAF---------EAPRQITMLAWARDGSKLYGLG--RDLHVMDPEA  163 (337)
T ss_dssp             EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEE---------ECCSSCCCEEECTTSSCEEEES--SSEEEEETTT
T ss_pred             EEEEeecCCcceeeeccccccceeeccccCCeEEEec---------cccCCceEEEEcCCCCEEEEEc--CCcceeeeec
Confidence            9988763            567899999998877665         3456678899999999999886  4578899999


Q ss_pred             CceEEEeecCCceeEEEEeecCC------------------------EEEEEeCCCeEEEEEcCCCeeEE-EEecCCCCe
Q 005656          284 RDLKSRWEVGCSLVKIVYHRVNG------------------------LLATVADDLVIRLFDVVALRMVR-KFEGHTDRI  338 (685)
Q Consensus       284 ~~~~~~~~~~~~i~~~~~~~~~~------------------------~l~~~~~dg~I~i~d~~~~~~~~-~~~~h~~~I  338 (685)
                      ++....+..+.......+.|++.                        ....+..++.+.+||..++.... .+..+...+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (337)
T d1pbyb_         164 GTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFY  243 (337)
T ss_dssp             TEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCE
T ss_pred             CcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcce
Confidence            98887776542222222222221                        11112234578999999887654 355677888


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656          339 TDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  407 (685)
Q Consensus       339 ~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~  407 (685)
                      ..++++|++.+++.+  ++.|++||+.+++.+..+.....+.+++|+|||++|++++.++ .|++|+..
T Consensus       244 ~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~-~i~v~D~~  309 (337)
T d1pbyb_         244 FSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALG-DLAAYDAE  309 (337)
T ss_dssp             EEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSS-EEEEEETT
T ss_pred             EEEEecccceEEEEc--cccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCCC-cEEEEECC
Confidence            999999999998776  4789999999999999998888899999999999999999886 89999854

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.89  E-value=3.8e-20  Score=189.86  Aligned_cols=304  Identities=12%  Similarity=0.012  Sum_probs=212.8

Q ss_pred             CCCcEEEEEEccCCCCEEEEE----eCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEec----------C
Q 005656            1 MRGAVTALAFSSDGQPLLASG----ASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS----------A   66 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg----~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s----------~   66 (685)
                      |.+++.+++++|||+.++++.    +..+.|.+||..+++.+..+. .+..+  .++|+|||++|++++          .
T Consensus        19 ~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~-~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~   95 (373)
T d2madh_          19 ADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVN-GGFLP--NPVAAHSGSEFALASTSFSRIAKGKR   95 (373)
T ss_pred             CCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEe-CCCCc--cEEEcCCCCEEEEEeecCCccccccc
Confidence            568899999999999444432    234679999999999999887 55443  799999999998874          4


Q ss_pred             CCcEEEEEecCCCCCCceeEecccCCCC-------CeEEEEecCCCEEEEEe--CCCceEEEEeecCceeeEechhhHHH
Q 005656           67 DNSIKMWIFDTTDGDPRLLRFRSGHSAP-------PLCIRFYANGRHILSAG--QDRAFRLFSVIQDQQSRELSQRHVAK  137 (685)
Q Consensus        67 D~~v~iWd~~~~~~~~~~~~~~~~h~~~-------v~~i~~~~~~~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~  137 (685)
                      ++.|.+||..++    +.+.....+...       ...+.|+++++.++...  .++.+.+|+....+....        
T Consensus        96 ~~~v~v~D~~t~----~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~--------  163 (373)
T d2madh_          96 TDYVEVFDPVTF----LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQL--------  163 (373)
T ss_pred             ceEEEEEECCCC----cEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEE--------
Confidence            678999998877    455444444433       34577888887665554  345677777654433221        


Q ss_pred             HHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEE
Q 005656          138 RARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFA  217 (685)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  217 (685)
                                                                                      .....++.++|+|+.+
T Consensus       164 ----------------------------------------------------------------~~~~~~~~~s~~g~~~  179 (373)
T d2madh_         164 ----------------------------------------------------------------LSSPTCYHIHPGAPST  179 (373)
T ss_pred             ----------------------------------------------------------------eccceeEEEecCCCcE
Confidence                                                                            2335678899998765


Q ss_pred             -EEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec----
Q 005656          218 -VLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV----  292 (685)
Q Consensus       218 -~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~----  292 (685)
                       ++.+.+|.+.+|+...+...........  ...+......+.+++++. ++..+.++.+.+|+..+.........    
T Consensus       180 ~v~~~~dg~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  256 (373)
T d2madh_         180 FYLLCAQGGLAKTDHAGGAAGAGLVGAML--TAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISAAGATNKAPIDALS  256 (373)
T ss_pred             EEEEcCCCeEEEEEcCCceeeEEEeeecc--ccCccceeeeEEECCCce-EEEecCCceEEEEEcCCCeEEEEEeecccc
Confidence             5778899999999998877655431110  012223344556666554 45566789999999887654322211    


Q ss_pred             ---------CCceeEEEEeecCCEEE----------EEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCE--EE
Q 005656          293 ---------GCSLVKIVYHRVNGLLA----------TVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKW--LL  351 (685)
Q Consensus       293 ---------~~~i~~~~~~~~~~~l~----------~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~--l~  351 (685)
                               ......+++++++..++          ....++.+.+||..+++.+..+. +...+.+++|+|||+.  ++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~v  335 (373)
T d2madh_         257 GGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYA  335 (373)
T ss_pred             CcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEE
Confidence                     12334456666665443          45566789999999999998876 6677999999999984  46


Q ss_pred             EEeCCCcEEEEEcCCCceeeEEeec-cceEEEEEcCC
Q 005656          352 SSGMDGSLRIWDVILARQIDAIHVD-VSITALSLSPN  387 (685)
Q Consensus       352 s~s~Dg~I~iwd~~~~~~i~~~~~~-~~v~~v~~spd  387 (685)
                      +++.|++|++||+.+++.+..+... ...+.+++.++
T Consensus       336 t~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         336 LSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             EeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence            7889999999999999999999744 44777776553

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=1.7e-19  Score=181.50  Aligned_cols=296  Identities=11%  Similarity=0.112  Sum_probs=199.9

Q ss_pred             EEEEEeCCCcEEEEeCCCCe---eeEEeecccccCeeEEEEeCCCcEEEE-ecCCCcEEEEEecCCCCCCceeEecccCC
Q 005656           17 LLASGASSGVISIWNLEKRR---LQSVIREAHDNAIISLHFFANEPVLMS-ASADNSIKMWIFDTTDGDPRLLRFRSGHS   92 (685)
Q Consensus        17 ~latg~~dg~I~vwd~~~~~---~~~~~~~~h~~~V~~l~~sp~~~~l~s-~s~D~~v~iWd~~~~~~~~~~~~~~~~h~   92 (685)
                      ++++++.|++|++|++++..   .+..+  .|.+.+.+++|+|||++|++ +..|+.|++|+++......+.... ..+.
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~--~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~-~~~~   82 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVV--DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAE-SALP   82 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE-EECS
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEE--cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeee-cccC
Confidence            56788899999999987643   23333  58899999999999998854 555899999999876543333322 2355


Q ss_pred             CCCeEEEEecCCCEEEEEeC-CCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceE
Q 005656           93 APPLCIRFYANGRHILSAGQ-DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVV  171 (685)
Q Consensus        93 ~~v~~i~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (685)
                      ..+..++|+|||++|++++. ++.+.+|+............                                       
T Consensus        83 ~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~---------------------------------------  123 (333)
T d1ri6a_          83 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDV---------------------------------------  123 (333)
T ss_dssp             SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEE---------------------------------------
T ss_pred             CCceEEEEcCCCCEEeecccCCCceeeeccccccceecccc---------------------------------------
Confidence            66788999999999999885 67889998876544332210                                       


Q ss_pred             EEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecC-CcEEEEECCCCccccccccccccccCC
Q 005656          172 TCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG-GWIERFNLQSGISRGSYLDMSERSNYA  250 (685)
Q Consensus       172 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d-g~i~~~d~~~~~~~~~~~~~~~~~~~~  250 (685)
                                                 ..+...+.++.++|+++++++++.+ ..|.+|+..............  ....
T Consensus       124 ---------------------------~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~  174 (333)
T d1ri6a_         124 ---------------------------VEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAE--VTTV  174 (333)
T ss_dssp             ---------------------------ECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE--EECS
T ss_pred             ---------------------------cCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeecee--eeee
Confidence                                       0344567788999999998887754 579999987654432221110  1114


Q ss_pred             CCcCEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCce----EEEee-------cCCceeEEEEeecCCEEEE-EeCCCeE
Q 005656          251 HNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDL----KSRWE-------VGCSLVKIVYHRVNGLLAT-VADDLVI  317 (685)
Q Consensus       251 h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~----~~~~~-------~~~~i~~~~~~~~~~~l~~-~~~dg~I  317 (685)
                      +......++|++++..++... ..+...+|+......    .....       .......++++++++++++ +..++.+
T Consensus       175 ~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~  254 (333)
T d1ri6a_         175 EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLI  254 (333)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred             cCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeE
Confidence            455678999999998877665 556788888654321    11111       1245667889999996555 4567899


Q ss_pred             EEEEcCCCeeEEE---EecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEc--CCCcee--eEEeeccceEEEE
Q 005656          318 RLFDVVALRMVRK---FEGHTDRITDFCFSEDGKWLLSSG-MDGSLRIWDV--ILARQI--DAIHVDVSITALS  383 (685)
Q Consensus       318 ~i~d~~~~~~~~~---~~~h~~~I~~l~~spdg~~l~s~s-~Dg~I~iwd~--~~~~~i--~~~~~~~~v~~v~  383 (685)
                      .+|++........   ...+...+.+++|+|||++|++++ .+++|++|++  .+|.+.  ..+.......+|.
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~~~~~~~~g~~p~~v~  328 (333)
T d1ri6a_         255 TVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVV  328 (333)
T ss_dssp             EEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECSSSCCEEE
T ss_pred             EEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcEEEEEeccCCCCCcEEE
Confidence            9999876533222   233456678999999999988775 5688999955  566553  3344333333333

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.85  E-value=9.5e-20  Score=185.30  Aligned_cols=303  Identities=15%  Similarity=0.056  Sum_probs=209.2

Q ss_pred             CcEEEEEEccCCCCEEEEE-----eCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEec----------CC
Q 005656            3 GAVTALAFSSDGQPLLASG-----ASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS----------AD   67 (685)
Q Consensus         3 ~~V~~l~fspdg~~~latg-----~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s----------~D   67 (685)
                      .|+...+.+|||+ .+++.     ..++.|.+||..+++.+.++. .+.  +..++|+|||++|++++          .|
T Consensus         2 ~p~~~~a~spdg~-~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~-~g~--~~~~a~SpDg~~l~v~~~~~~~~~~g~~d   77 (355)
T d2bbkh_           2 EPRILEAPAPDAR-RVYVNDPAHFAAVTQQFVIDGEAGRVIGMID-GGF--LPNPVVADDGSFIAHASTVFSRIARGERT   77 (355)
T ss_dssp             CCCBCCCCCCCTT-EEEEEECGGGCSSEEEEEEETTTTEEEEEEE-ECS--SCEEEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred             CCcEeEeeCCCCC-EEEEEecccCCCcCeEEEEECCCCcEEEEEE-CCC--CCceEEcCCCCEEEEEeCCCccccccCCC
Confidence            4555567899999 55543     245679999999999999886 443  44799999999887643          47


Q ss_pred             CcEEEEEecCCCCCCceeEecccC-------CCCCeEEEEecCCCEEEEEe--CCCceEEEEeecCceeeEechhhHHHH
Q 005656           68 NSIKMWIFDTTDGDPRLLRFRSGH-------SAPPLCIRFYANGRHILSAG--QDRAFRLFSVIQDQQSRELSQRHVAKR  138 (685)
Q Consensus        68 ~~v~iWd~~~~~~~~~~~~~~~~h-------~~~v~~i~~~~~~~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~  138 (685)
                      +.|++||..++    +.+.....+       ...+..+.|+|++++++.++  .+..+.+|+..+++....+....    
T Consensus        78 ~~v~v~D~~t~----~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~----  149 (355)
T d2bbkh_          78 DYVEVFDPVTL----LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD----  149 (355)
T ss_dssp             EEEEEECTTTC----CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----
T ss_pred             CEEEEEECCCC----CEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCC----
Confidence            89999998876    444333222       23346789999999888775  45688999998877655542100    


Q ss_pred             HhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEE
Q 005656          139 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAV  218 (685)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  218 (685)
                                                              ....                 ........+.++++|..++
T Consensus       150 ----------------------------------------~~~~-----------------~~~~~~~~~~~~~dg~~~~  172 (355)
T d2bbkh_         150 ----------------------------------------CYHI-----------------FPTAPDTFFMHCRDGSLAK  172 (355)
T ss_dssp             ----------------------------------------EEEE-----------------EEEETTEEEEEETTSCEEE
T ss_pred             ----------------------------------------cceE-----------------eecCCcceEEEcCCCCEEE
Confidence                                                    0000                 0012234567778877776


Q ss_pred             EEe-cCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEE--eec---
Q 005656          219 LGT-AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSR--WEV---  292 (685)
Q Consensus       219 ~g~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~---  292 (685)
                      +.. .++.+.+++......             .+...+....+.+++..++.++.++.+++|++..+.....  ...   
T Consensus       173 v~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  239 (355)
T d2bbkh_         173 VAFGTEGTPEITHTEVFHP-------------EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTE  239 (355)
T ss_dssp             EECCSSSCCEEEECCCCSC-------------TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCH
T ss_pred             EEecCCCeEEEEecccccc-------------eecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCccc
Confidence            653 345566666554332             3333445567778888899999999999999988754321  111   


Q ss_pred             --------CCceeEEEEeecCCEEEEEeCC----------CeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCC--EEEE
Q 005656          293 --------GCSLVKIVYHRVNGLLATVADD----------LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK--WLLS  352 (685)
Q Consensus       293 --------~~~i~~~~~~~~~~~l~~~~~d----------g~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~--~l~s  352 (685)
                              ......+++++++..++....+          ..|.+||..+++.+..+.. ...+.+++|+|||+  ++++
T Consensus       240 ~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v~  318 (355)
T d2bbkh_         240 AERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYAL  318 (355)
T ss_dssp             HHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEE
T ss_pred             ceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC-CCCEEEEEEcCCCCeEEEEE
Confidence                    1234568899999987776543          3799999999999988873 45689999999998  4556


Q ss_pred             EeCCCcEEEEEcCCCceeeEEeeccc-eEEEEEcCCC
Q 005656          353 SGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNM  388 (685)
Q Consensus       353 ~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg  388 (685)
                      ++.|+.|++||+.+++.+..+..... ...+.+.++|
T Consensus       319 ~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~~  355 (355)
T d2bbkh_         319 STGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG  355 (355)
T ss_dssp             ETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCCC
T ss_pred             ECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCCCC
Confidence            77899999999999999999875433 5555555443

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=6.8e-19  Score=176.96  Aligned_cols=274  Identities=11%  Similarity=0.157  Sum_probs=192.3

Q ss_pred             EEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEe-CCCceEEEEeecCceeeEechhhHHHH
Q 005656           60 VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKR  138 (685)
Q Consensus        60 ~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~  138 (685)
                      .+++++.|++|++|+++... ....+.. ..|.+.|..++|+|||++|++++ .|+.|++|++........+...     
T Consensus         6 v~v~~~~~~~I~v~~~~~~~-~l~~~~~-~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~-----   78 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEG-ALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAE-----   78 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTS-CEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE-----
T ss_pred             EEEECCCCCcEEEEEEcCCC-CeEEEEE-EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeee-----
Confidence            56788899999999998642 2233333 36788999999999999996665 4899999999765433222100     


Q ss_pred             HhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEE
Q 005656          139 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAV  218 (685)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  218 (685)
                                                                                  ......+..++++|+|++++
T Consensus        79 ------------------------------------------------------------~~~~~~p~~l~~spDg~~l~   98 (333)
T d1ri6a_          79 ------------------------------------------------------------SALPGSLTHISTDHQGQFVF   98 (333)
T ss_dssp             ------------------------------------------------------------EECSSCCSEEEECTTSSEEE
T ss_pred             ------------------------------------------------------------cccCCCceEEEEcCCCCEEe
Confidence                                                                        02234466799999999998


Q ss_pred             EEec-CCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCceEEE-------
Q 005656          219 LGTA-GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSR-------  289 (685)
Q Consensus       219 ~g~~-dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~-------  289 (685)
                      +++. ++.+.+|+...........      ...+...+.++.++|+++++++++ .+..+.+|+.........       
T Consensus        99 v~~~~~~~v~~~~~~~~~~~~~~~------~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  172 (333)
T d1ri6a_          99 VGSYNAGNVSVTRLEDGLPVGVVD------VVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVT  172 (333)
T ss_dssp             EEETTTTEEEEEEEETTEEEEEEE------EECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEE
T ss_pred             ecccCCCceeeeccccccceeccc------ccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeee
Confidence            8875 6788999887665543331      125666788899999999888887 456799999876533221       


Q ss_pred             eecCCceeEEEEeecCCEEEEEe-CCCeEEEEEcCCC----eeEEEEe------cCCCCeEEEEEcCCCCEEEEE-eCCC
Q 005656          290 WEVGCSLVKIVYHRVNGLLATVA-DDLVIRLFDVVAL----RMVRKFE------GHTDRITDFCFSEDGKWLLSS-GMDG  357 (685)
Q Consensus       290 ~~~~~~i~~~~~~~~~~~l~~~~-~dg~I~i~d~~~~----~~~~~~~------~h~~~I~~l~~spdg~~l~s~-s~Dg  357 (685)
                      .........++|++++..++... ..+...+|+....    .......      ........+++++|+++++.+ ..++
T Consensus       173 ~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~  252 (333)
T d1ri6a_         173 TVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTAS  252 (333)
T ss_dssp             CSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTT
T ss_pred             eecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCC
Confidence            11235567899999999776654 5567888876533    2222222      123457788999999977755 4678


Q ss_pred             cEEEEEcCCCceeeEE----eeccceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656          358 SLRIWDVILARQIDAI----HVDVSITALSLSPNMDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       358 ~I~iwd~~~~~~i~~~----~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~  406 (685)
                      .+.+|++........+    .....+.+++|+|||++|++++.+++.|.+|+.
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~i  305 (333)
T d1ri6a_         253 LITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEI  305 (333)
T ss_dssp             EEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred             eEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence            8999998765433322    223348899999999999999888779999964

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.82  E-value=1.6e-17  Score=170.01  Aligned_cols=283  Identities=8%  Similarity=-0.059  Sum_probs=195.8

Q ss_pred             ccccCeeEEEEeCCCcEEEEec-----CCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeC------
Q 005656           44 AHDNAIISLHFFANEPVLMSAS-----ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ------  112 (685)
Q Consensus        44 ~h~~~V~~l~~sp~~~~l~s~s-----~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~------  112 (685)
                      .+.+++.+++++|||+.++...     .++.|.+||..++    +.+..+..+..+  .+.|+|||++|++++.      
T Consensus        18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg----~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~   91 (373)
T d2madh_          18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSG----SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIA   91 (373)
T ss_pred             cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCC----CEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCccc
Confidence            6888999999999999887642     2356777776665    666666655543  7999999999998753      


Q ss_pred             ----CCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCcc
Q 005656          113 ----DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNF  188 (685)
Q Consensus       113 ----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~  188 (685)
                          ++.|.+||+.+++....+.......                                                   
T Consensus        92 ~~~~~~~v~v~D~~t~~~~~~~~~~~~~~---------------------------------------------------  120 (373)
T d2madh_          92 KGKRTDYVEVFDPVTFLPIADIELPDAPR---------------------------------------------------  120 (373)
T ss_pred             ccccceEEEEEECCCCcEEEEEecCCcce---------------------------------------------------
Confidence                5789999998887765553211000                                                   


Q ss_pred             ccCceeecCCCCCCCCeEEEEEccCCCEEEEEe--cCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCE
Q 005656          189 VLGEHILRPCPENPTAVKACTISACGNFAVLGT--AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTL  266 (685)
Q Consensus       189 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~--~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  266 (685)
                          .      ........+.++++++.+++..  .++.+.+|+.......            .+.....++.++|+++.
T Consensus       121 ----~------~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~s~~g~~  178 (373)
T d2madh_         121 ----F------DVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDD------------QLLSSPTCYHIHPGAPS  178 (373)
T ss_pred             ----e------EeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEE------------EEeccceeEEEecCCCc
Confidence                0      0011234578899998776654  4567888988776554            33345678899999865


Q ss_pred             -EEEEECCCeEEEEECCCCceEEEeecC-------CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEE--EEecCC-
Q 005656          267 -MISAGYHGDIKVWDFKGRDLKSRWEVG-------CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR--KFEGHT-  335 (685)
Q Consensus       267 -l~s~s~dg~i~iwd~~~~~~~~~~~~~-------~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~--~~~~h~-  335 (685)
                       +++.+.||.+.+|+...+.........       .......+.+++ .++..+.++.+.+|+..++....  .+..+. 
T Consensus       179 ~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  257 (373)
T d2madh_         179 TFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSG-RIVWPVYSGKILQADISAAGATNKAPIDALSG  257 (373)
T ss_pred             EEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCc-eEEEecCCceEEEEEcCCCeEEEEEeeccccC
Confidence             467789999999999988776654321       112334444444 45566678899999988765432  222222 


Q ss_pred             ---------CCeEEEEEcCCCCEEE----------EEeCCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeE--EEE
Q 005656          336 ---------DRITDFCFSEDGKWLL----------SSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVL--ATA  394 (685)
Q Consensus       336 ---------~~I~~l~~spdg~~l~----------s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~L--at~  394 (685)
                               .....+++++++.+++          +...++.+.+||..+++.+..+.....+.+++|+|||+.+  +++
T Consensus       258 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~vt~  337 (373)
T d2madh_         258 GRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALS  337 (373)
T ss_pred             cEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEECCCCCEEEEEEe
Confidence                     2234456667666544          4456678999999999999999888889999999999853  455


Q ss_pred             EeCCCeEEEEEcC
Q 005656          395 HVDQNGVYLWVNR  407 (685)
Q Consensus       395 ~~d~~~I~lW~~~  407 (685)
                      +.|+ .|++||..
T Consensus       338 ~~d~-~v~v~D~~  349 (373)
T d2madh_         338 AGTE-VLHIYDAG  349 (373)
T ss_pred             CCCC-eEEEEECC
Confidence            5554 99999854

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.74  E-value=1.2e-16  Score=161.83  Aligned_cols=273  Identities=14%  Similarity=0.077  Sum_probs=174.7

Q ss_pred             EEEEEEccCCCCEEEE---------EeCCCcEEEEeCCCCeeeEEeecccc-------cCeeEEEEeCCCcEEEEec--C
Q 005656            5 VTALAFSSDGQPLLAS---------GASSGVISIWNLEKRRLQSVIREAHD-------NAIISLHFFANEPVLMSAS--A   66 (685)
Q Consensus         5 V~~l~fspdg~~~lat---------g~~dg~I~vwd~~~~~~~~~~~~~h~-------~~V~~l~~sp~~~~l~s~s--~   66 (685)
                      +..++|||||+.+.++         ++.+|.|++||+.+++....+. .+.       .....++|+|++++++.++  .
T Consensus        49 ~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~-~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~  127 (355)
T d2bbkh_          49 LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIE-LPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSP  127 (355)
T ss_dssp             SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGEEECTTSSEEEEEECSS
T ss_pred             CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEe-cCCcceeecCCCCceEEEecCCCeeEEecCCC
Confidence            4478999999944333         2347899999999999888775 222       2345689999999877664  4


Q ss_pred             CCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccc
Q 005656           67 DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKE  146 (685)
Q Consensus        67 D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (685)
                      +..+.+|+...+    +.+..+..+...   ..+.......++.+.||...++............               
T Consensus       128 ~~~~~~~~~~~~----~~~~~~~~~~~~---~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~---------------  185 (355)
T d2bbkh_         128 APAVGVVDLEGK----AFKRMLDVPDCY---HIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH---------------  185 (355)
T ss_dssp             SCEEEEEETTTT----EEEEEEECCSEE---EEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE---------------
T ss_pred             CceeeeeecCCC----cEeeEEecCCcc---eEeecCCcceEEEcCCCCEEEEEecCCCeEEEEe---------------
Confidence            678899988765    444443332211   1111112233334444444444332222111110               


Q ss_pred             cccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcE
Q 005656          147 EELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWI  226 (685)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i  226 (685)
                                                            ....         ...+...+....+++++..++.++.+|.+
T Consensus       186 --------------------------------------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (355)
T d2bbkh_         186 --------------------------------------TEVF---------HPEDEFLINHPAYSQKAGRLVWPTYTGKI  218 (355)
T ss_dssp             --------------------------------------CCCC---------SCTTSCBCSCCEEETTTTEEEEEBTTSEE
T ss_pred             --------------------------------------cccc---------cceecceeeeccccCCCCeEEEecCCCeE
Confidence                                                  0000         00122234445677888889999999999


Q ss_pred             EEEECCCCcccccccccc----ccccCCCCcCEEEEEEcCCCCEEEEEECC----------CeEEEEECCCCceEEEeec
Q 005656          227 ERFNLQSGISRGSYLDMS----ERSNYAHNGEVVGVACDSTNTLMISAGYH----------GDIKVWDFKGRDLKSRWEV  292 (685)
Q Consensus       227 ~~~d~~~~~~~~~~~~~~----~~~~~~h~~~v~~l~~~~~~~~l~s~s~d----------g~i~iwd~~~~~~~~~~~~  292 (685)
                      ++|++..+..........    .............+++++++..++....+          ..|.+||..+++.+..+..
T Consensus       219 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~  298 (355)
T d2bbkh_         219 HQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM  298 (355)
T ss_dssp             EEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred             EEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC
Confidence            999998875432211000    00000111233457889999887766543          3699999999999999888


Q ss_pred             CCceeEEEEeecCC--EEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCC
Q 005656          293 GCSLVKIVYHRVNG--LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDG  347 (685)
Q Consensus       293 ~~~i~~~~~~~~~~--~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg  347 (685)
                      +..+.+++|+|||+  +++++..|+.|++||+.+++.++++.++......+.+.++|
T Consensus       299 ~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~~  355 (355)
T d2bbkh_         299 GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG  355 (355)
T ss_dssp             EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCCC
T ss_pred             CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCCCC
Confidence            88899999999998  45667789999999999999999998876666666665543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.73  E-value=4.8e-17  Score=166.20  Aligned_cols=300  Identities=9%  Similarity=-0.036  Sum_probs=195.0

Q ss_pred             CCcEEEEEEccCCCCEEEE--EeCCCc--EEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEec----------CC
Q 005656            2 RGAVTALAFSSDGQPLLAS--GASSGV--ISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS----------AD   67 (685)
Q Consensus         2 ~~~V~~l~fspdg~~~lat--g~~dg~--I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s----------~D   67 (685)
                      .++...++..++|+...++  +..+|.  |.+||..+++.+..+. ++..+  .++|+|||+.|++++          .|
T Consensus        19 ~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~-~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d   95 (368)
T d1mdah_          19 DGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSL-GAFLS--LAVAGHSGSDFALASTSFARSAKGKRT   95 (368)
T ss_dssp             CCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEE-ECTTC--EEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred             CCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEe-CCCCC--cceECCCCCEEEEEcccCccccccccC
Confidence            4556667778888732222  334444  7777999999999887 55443  689999999888754          47


Q ss_pred             CcEEEEEecCCCCCCceeEecccC-------CCCCeEEEEecCCCEEEEEe-CCCceEEEEeecCceeeEechhhHHHHH
Q 005656           68 NSIKMWIFDTTDGDPRLLRFRSGH-------SAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRA  139 (685)
Q Consensus        68 ~~v~iWd~~~~~~~~~~~~~~~~h-------~~~v~~i~~~~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~  139 (685)
                      ++|.+||..+.    +.+.....+       ......++|+|||++++++. .++.+.+||+.+.+....+....     
T Consensus        96 ~~v~v~D~~t~----~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~-----  166 (368)
T d1mdah_          96 DYVEVFDPVTF----LPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSAS-----  166 (368)
T ss_dssp             EEEEEECTTTC----CEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSS-----
T ss_pred             CeEEEEECCCC----cEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccC-----
Confidence            78999988776    444433222       23356799999999998876 57999999998887665543110     


Q ss_pred             hhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEE
Q 005656          140 RKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL  219 (685)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  219 (685)
                                                                                    ...+    .......++.
T Consensus       167 --------------------------------------------------------------~~~~----~~~~~~~~v~  180 (368)
T d1mdah_         167 --------------------------------------------------------------CFHI----HPGAAATHYL  180 (368)
T ss_dssp             --------------------------------------------------------------CCCC----EEEETTEEEC
T ss_pred             --------------------------------------------------------------cceE----ccCCCceEEE
Confidence                                                                          0000    0011233444


Q ss_pred             EecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec-------
Q 005656          220 GTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV-------  292 (685)
Q Consensus       220 g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-------  292 (685)
                      .+.||.+..+++............  .....+...+..+.+.+++..+.+.  ++.++++++..+........       
T Consensus       181 ~~~Dg~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~  256 (368)
T d1mdah_         181 GSCPASLAASDLAAAPAAAGIVGA--QCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGR  256 (368)
T ss_dssp             CCCTTSCEEEECCSSCCCCEECCC--CSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHH
T ss_pred             EcCCCCEEEEEecCCceeeeeeec--ccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeeccccccee
Confidence            455555666655544332221100  0111445555667777777655543  46677777665544332211       


Q ss_pred             ------CCceeEEEEeecCCEEEEEeCC---------CeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCE--EEEEeC
Q 005656          293 ------GCSLVKIVYHRVNGLLATVADD---------LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKW--LLSSGM  355 (685)
Q Consensus       293 ------~~~i~~~~~~~~~~~l~~~~~d---------g~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~--l~s~s~  355 (685)
                            ......+++++++..+++...+         ..|.+||..+++.+..+.. ...+.+++|+|||+.  +++++.
T Consensus       257 ~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~  335 (368)
T d1mdah_         257 KADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNYANSAG  335 (368)
T ss_dssp             HHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE-EEEECEEEECCSSSCEEEEEETT
T ss_pred             eeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecC-CCceeEEEECCCCCEEEEEEeCC
Confidence                  1223458889999877665432         3699999999998888763 456889999999973  456678


Q ss_pred             CCcEEEEEcCCCceeeEEeeccceEEEEE
Q 005656          356 DGSLRIWDVILARQIDAIHVDVSITALSL  384 (685)
Q Consensus       356 Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~  384 (685)
                      |++|++||..+++.+..+......+.|++
T Consensus       336 ~~~v~v~D~~tgk~~~~i~~g~~P~~l~~  364 (368)
T d1mdah_         336 TEVLDIYDAASDQDQSSVELDKGPESLSV  364 (368)
T ss_dssp             TTEEEEEESSSCEEEEECCCCSCCCEEEC
T ss_pred             CCeEEEEECCCCCEEEEEECCCCCCEEEE
Confidence            99999999999999999987766666655

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.62  E-value=1.4e-15  Score=154.00  Aligned_cols=315  Identities=8%  Similarity=-0.052  Sum_probs=192.6

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeeeEEeec-----------------------------ccccCeeEEEEeCCCcEEEEe-c
Q 005656           16 PLLASGASSGVISIWNLEKRRLQSVIRE-----------------------------AHDNAIISLHFFANEPVLMSA-S   65 (685)
Q Consensus        16 ~~latg~~dg~I~vwd~~~~~~~~~~~~-----------------------------~h~~~V~~l~~sp~~~~l~s~-s   65 (685)
                      +.+++|+.+|.|+||++.+++.+.++..                             .|........++|||++|+.+ .
T Consensus        12 y~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~   91 (441)
T d1qnia2          12 YGFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDK   91 (441)
T ss_dssp             EEEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEET
T ss_pred             EEEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcC
Confidence            4567888999999999999998887641                             122334455567999988555 5


Q ss_pred             CCCcEEEEEecCCCCCCceeEec-ccCCCCCeEEEEecCCC--EEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhc
Q 005656           66 ADNSIKMWIFDTTDGDPRLLRFR-SGHSAPPLCIRFYANGR--HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKL  142 (685)
Q Consensus        66 ~D~~v~iWd~~~~~~~~~~~~~~-~~h~~~v~~i~~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  142 (685)
                      .++.|.++|+++.    +..... -.+...+..++|+|+|+  |++..+.+ .+.+=  ..+..... .           
T Consensus        92 ~~~rVavIDl~t~----k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~-~v~~~--~dg~~~~~-~-----------  152 (441)
T d1qnia2          92 ANTRVARIRLDIM----KTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEF-VIPQP--NDGTDFSL-D-----------  152 (441)
T ss_dssp             TTTEEEEEETTTT----EEEEEEECTTCCCEEEEEECCSSBCCEEEEEECS-CEESS--CSSSCCCG-G-----------
T ss_pred             CCCEEEEEECCCC----cEeeEEecCCCCCccceEEeccCCEEEEEeccCC-ccccc--Cccccccc-c-----------
Confidence            6889999999876    443332 24567889999999988  44444433 22210  00000000 0           


Q ss_pred             cccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec
Q 005656          143 KMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA  222 (685)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~  222 (685)
                                                .      ....+..++.........+..     ......+.++|+|+++++.+.
T Consensus       153 --------------------------~------~~~~~~~iD~~t~~v~~qI~v-----~~~p~~v~~spdGk~a~vt~~  195 (441)
T d1qnia2         153 --------------------------N------SYTMFTAIDAETMDVAWQVIV-----DGNLDNTDADYTGKYATSTCY  195 (441)
T ss_dssp             --------------------------G------EEEEEEEEETTTCSEEEEEEE-----SSCCCCEEECSSSSEEEEEES
T ss_pred             --------------------------c------ccceEEeecCccceeeEEEec-----CCCccceEECCCCCEEEEEec
Confidence                                      0      000111222222222222211     234678899999999998876


Q ss_pred             CC-cEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEE
Q 005656          223 GG-WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVY  301 (685)
Q Consensus       223 dg-~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~  301 (685)
                      +. .+..++..+......+.         ....-..+.+.++|+++..+ .++.+.+++....+....+..+.....+.+
T Consensus       196 nse~~~~id~~t~~~~d~i~---------v~n~p~~~~~~~dGk~~~v~-~~~v~vvd~~~~~~v~~~IPvgksPhGv~v  265 (441)
T d1qnia2         196 NSERAVDLAGTMRNDRDWVV---------VFNVERIAAAVKAGNFKTIG-DSKVPVVDGRGESEFTRYIPVPKNPHGLNT  265 (441)
T ss_dssp             CTTCCSSHHHHTCSSBCEEE---------EEEHHHHHHHHHTTCCBCCT-TCCCCEEECSSSCSSEEEECCBSSCCCEEE
T ss_pred             CCCceEEEeccCcceEEEEE---------eCCccceEEEecCCCEEEeC-CCCcEEEEcccCCceEEEEeCCCCccCceE
Confidence            64 22222222222211110         00011123346788866553 467888888888788888888777889999


Q ss_pred             eecCCEEEE-EeCCCeEEEEEcCCCee-----------EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC---
Q 005656          302 HRVNGLLAT-VADDLVIRLFDVVALRM-----------VRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL---  366 (685)
Q Consensus       302 ~~~~~~l~~-~~~dg~I~i~d~~~~~~-----------~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~---  366 (685)
                      +|||+++++ +..+++|.+||+.+...           +.......-.....+|.++|..+.+.+.|.+|..|++..   
T Consensus       266 SPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~  345 (441)
T d1qnia2         266 SPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIK  345 (441)
T ss_dssp             CTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHH
T ss_pred             CCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhh
Confidence            999997655 56789999999865221           111111112245568999998888999999999999852   


Q ss_pred             -------CceeeEEeecc------ceEEEEEcCCCCeEEEEEe
Q 005656          367 -------ARQIDAIHVDV------SITALSLSPNMDVLATAHV  396 (685)
Q Consensus       367 -------~~~i~~~~~~~------~v~~v~~spdg~~Lat~~~  396 (685)
                             ...+..+..|.      .+.+.+++|||+||++++.
T Consensus       346 ~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k  388 (441)
T d1qnia2         346 HYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSK  388 (441)
T ss_dssp             HHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEES
T ss_pred             hhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCc
Confidence                   12344443222      2556679999999999953

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.60  E-value=6e-14  Score=147.87  Aligned_cols=338  Identities=11%  Similarity=0.014  Sum_probs=193.1

Q ss_pred             CCCcEEEEEEccCCCCEEEEEe---------CCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEE
Q 005656            1 MRGAVTALAFSSDGQPLLASGA---------SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIK   71 (685)
Q Consensus         1 h~~~V~~l~fspdg~~~latg~---------~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~   71 (685)
                      |...|.+++|||||+ .|+.++         .++.+.|||+.+++... +. .|.+.+..+.|||||+.+|.. .++.+.
T Consensus        60 ~~~~i~~~~~SpDg~-~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~-l~-~~~~~~~~~~~SPDG~~ia~~-~~~~l~  135 (470)
T d2bgra1          60 FGHSINDYSISPDGQ-FILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EE-RIPNNTQWVTWSPVGHKLAYV-WNNDIY  135 (470)
T ss_dssp             SSSCCCEEEECTTSS-EEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SS-CCCTTEEEEEECSSTTCEEEE-ETTEEE
T ss_pred             ccCccceeEECCCCC-EEEEEECCcceeeeccCceEEEEECCCCcccc-cc-cCCccccccccccCcceeeEe-ecccce
Confidence            346799999999999 666653         35788999999998654 44 788999999999999999986 467899


Q ss_pred             EEEecCCCCCCceeEeccc------------------CCCCCeEEEEecCCCEEEEEeCCCc-eEEEEeecCceeeEech
Q 005656           72 MWIFDTTDGDPRLLRFRSG------------------HSAPPLCIRFYANGRHILSAGQDRA-FRLFSVIQDQQSRELSQ  132 (685)
Q Consensus        72 iWd~~~~~~~~~~~~~~~~------------------h~~~v~~i~~~~~~~~l~s~s~dg~-i~vwd~~~~~~~~~~~~  132 (685)
                      +|+...+.    ..+....                  +.+....+.|+|||++|+....|.+ +..|++.........  
T Consensus       136 ~~~~~~g~----~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~--  209 (470)
T d2bgra1         136 VKIEPNLP----SYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQ--  209 (470)
T ss_dssp             EESSTTSC----CEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCS--
T ss_pred             EEECCCCc----eeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCC--
Confidence            99776652    2211111                  2334567889999999999877644 666665322110000  


Q ss_pred             hhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeec----C---CCCCCCCe
Q 005656          133 RHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR----P---CPENPTAV  205 (685)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~----~---~~~~~~~v  205 (685)
                                        .+....+....  ....       .....+.+|++...........    .   .......+
T Consensus       210 ------------------~~~~~~~~~~~--~g~~-------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (470)
T d2bgra1         210 ------------------YPKTVRVPYPK--AGAV-------NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYL  262 (470)
T ss_dssp             ------------------SCEEEEEECCB--TTSC-------CCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEE
T ss_pred             ------------------CCeeeeecccc--cccc-------CCcceEEEEECCCcceeeeccccccCCccccCCCCceE
Confidence                              00000000000  0000       0122456666654432211100    0   00223346


Q ss_pred             EEEEEccCCCEEEEEec-CC-----cEEEEECCCCcccccccccc-----ccccCCCCcCEEEEEEcCCCCEEEEEECCC
Q 005656          206 KACTISACGNFAVLGTA-GG-----WIERFNLQSGISRGSYLDMS-----ERSNYAHNGEVVGVACDSTNTLMISAGYHG  274 (685)
Q Consensus       206 ~~~~~s~~g~~l~~g~~-dg-----~i~~~d~~~~~~~~~~~~~~-----~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg  274 (685)
                      ..+.|.+++..++.... .+     .+..+|..++..........     ......|........+++++.+++.+..||
T Consensus       263 ~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg  342 (470)
T d2bgra1         263 CDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEG  342 (470)
T ss_dssp             EEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTS
T ss_pred             EEEEEcCCCceeEEEeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccCc
Confidence            77889888876665432 22     24445555555433221100     000012222222233333334456666777


Q ss_pred             e--EEEEECCCCceEEEeecCCceeEEEEeecCCEE-EEEeCCC------eEEEEEcCCCeeEEEE----ecCCCCeEEE
Q 005656          275 D--IKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLL-ATVADDL------VIRLFDVVALRMVRKF----EGHTDRITDF  341 (685)
Q Consensus       275 ~--i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg------~I~i~d~~~~~~~~~~----~~h~~~I~~l  341 (685)
                      .  |++|+..++........+..+..+ ++++++.+ +++..++      .|+-.++..+.....+    .+|...+..+
T Consensus       343 ~~~ly~~~~~g~~~~~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~  421 (470)
T d2bgra1         343 YRHICYFQIDKKDCTFITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSV  421 (470)
T ss_dssp             CEEEEEEETTCSCCEESCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEE
T ss_pred             CceeEEEeccCCceeeeccCCeeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCCEEEE
Confidence            5  455566666555544555666665 55556644 4444322      2554555555444444    3678889999


Q ss_pred             EEcCCCCEEE-EEe--CCCcEEEEEcCCCceeeEEeec
Q 005656          342 CFSEDGKWLL-SSG--MDGSLRIWDVILARQIDAIHVD  376 (685)
Q Consensus       342 ~~spdg~~l~-s~s--~Dg~I~iwd~~~~~~i~~~~~~  376 (685)
                      +|||||++++ +++  ..-.+.+|+..+++.+..+...
T Consensus       422 ~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~v~~le~n  459 (470)
T d2bgra1         422 SFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDN  459 (470)
T ss_dssp             EECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEECC
T ss_pred             EECCCCCEEEEEecCCCCCeEEEEECCCCCEEEEEecc
Confidence            9999999877 333  3345899999999999888643

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.60  E-value=1.9e-13  Score=143.93  Aligned_cols=114  Identities=11%  Similarity=0.106  Sum_probs=90.5

Q ss_pred             EEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEee----cccccCeeEEEEeCCCcEEEEecC---------CCcEEEE
Q 005656            7 ALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR----EAHDNAIISLHFFANEPVLMSASA---------DNSIKMW   73 (685)
Q Consensus         7 ~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~----~~h~~~V~~l~~sp~~~~l~s~s~---------D~~v~iW   73 (685)
                      .+.|.+|++ ++..  .+|.|.+||+.+++....+.    ..|...|.++.|||||++|+.++.         ++.+.+|
T Consensus        21 ~~~W~~d~~-~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          21 SLRWISDHE-YLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCEECSSSE-EEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             CCEeCCCCE-EEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            577999998 6664  47889999999998776554    134578999999999999998753         5678899


Q ss_pred             EecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeE
Q 005656           74 IFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRE  129 (685)
Q Consensus        74 d~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~  129 (685)
                      |+.++    . +..+..|...+..+.|+|||++++.. .++.+.+|+..++...+.
T Consensus        98 d~~~~----~-~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~  147 (470)
T d2bgra1          98 DLNKR----Q-LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRI  147 (470)
T ss_dssp             ETTTT----E-ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEEC
T ss_pred             ECCCC----c-ccccccCCccccccccccCcceeeEe-ecccceEEECCCCceeee
Confidence            88875    3 44567888999999999999999986 477899999887765443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.55  E-value=1.8e-15  Score=153.14  Aligned_cols=269  Identities=12%  Similarity=0.066  Sum_probs=173.0

Q ss_pred             CCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCc--EEEEecCCC-----------
Q 005656            2 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP--VLMSASADN-----------   68 (685)
Q Consensus         2 ~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~--~l~s~s~D~-----------   68 (685)
                      .-.+....++|||++++++...++.|.++|+.+++....+...+...+..++|+|+++  +++..+.+.           
T Consensus        71 hP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~  150 (441)
T d1qnia2          71 HPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFS  150 (441)
T ss_dssp             CCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCC
T ss_pred             CCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccc
Confidence            3445666678999955566678899999999999998887766788999999999998  554444332           


Q ss_pred             ------cEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCC-ceEEEEeecCceeeEechhhHHHHHhh
Q 005656           69 ------SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR-AFRLFSVIQDQQSRELSQRHVAKRARK  141 (685)
Q Consensus        69 ------~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~  141 (685)
                            .+..+|..+.    ........ .+.+..+.|+|+|+++++++.+. .+..++..+......+.          
T Consensus       151 ~~~~~~~~~~iD~~t~----~v~~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~----------  215 (441)
T d1qnia2         151 LDNSYTMFTAIDAETM----DVAWQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVV----------  215 (441)
T ss_dssp             GGGEEEEEEEEETTTC----SEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEE----------
T ss_pred             cccccceEEeecCccc----eeeEEEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEE----------
Confidence                  1233444433    33322222 34578899999999999887653 22222222221111110          


Q ss_pred             ccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe
Q 005656          142 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT  221 (685)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~  221 (685)
                                                              +.+                   ....+.++++|+++.++ 
T Consensus       216 ----------------------------------------v~n-------------------~p~~~~~~~dGk~~~v~-  235 (441)
T d1qnia2         216 ----------------------------------------VFN-------------------VERIAAAVKAGNFKTIG-  235 (441)
T ss_dssp             ----------------------------------------EEE-------------------HHHHHHHHHTTCCBCCT-
T ss_pred             ----------------------------------------eCC-------------------ccceEEEecCCCEEEeC-
Confidence                                                    000                   00112345666665553 


Q ss_pred             cCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEE-EECCCeEEEEECCCCc------------eEE
Q 005656          222 AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS-AGYHGDIKVWDFKGRD------------LKS  288 (685)
Q Consensus       222 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s-~s~dg~i~iwd~~~~~------------~~~  288 (685)
                      .++.+.+++.........++        .. ....++.++|+|+++++ +..+++|.+||+.+..            ...
T Consensus       236 ~~~v~vvd~~~~~~v~~~IP--------vg-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~  306 (441)
T d1qnia2         236 DSKVPVVDGRGESEFTRYIP--------VP-KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVA  306 (441)
T ss_dssp             TCCCCEEECSSSCSSEEEEC--------CB-SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEE
T ss_pred             CCCcEEEEcccCCceEEEEe--------CC-CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEe
Confidence            34566666655554444442        22 33567999999998765 5589999999986521            111


Q ss_pred             EeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCC----------CeeEEEE-----ecCCCCeEEEEEcCCCCEEEEE
Q 005656          289 RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA----------LRMVRKF-----EGHTDRITDFCFSEDGKWLLSS  353 (685)
Q Consensus       289 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~----------~~~~~~~-----~~h~~~I~~l~~spdg~~l~s~  353 (685)
                      .....-.....+|.++|..+.+...|..|..|++..          ...+..+     .||...+.+.+++|||+||+++
T Consensus       307 ~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~  386 (441)
T d1qnia2         307 EPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVL  386 (441)
T ss_dssp             CCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEE
T ss_pred             ecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEec
Confidence            122223345678999998888999999999999752          1344444     4677777778899999999999


Q ss_pred             e
Q 005656          354 G  354 (685)
Q Consensus       354 s  354 (685)
                      +
T Consensus       387 ~  387 (441)
T d1qnia2         387 S  387 (441)
T ss_dssp             E
T ss_pred             C
Confidence            4

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.53  E-value=1.6e-13  Score=139.60  Aligned_cols=263  Identities=7%  Similarity=-0.041  Sum_probs=166.8

Q ss_pred             EEEEccCCCCEEEEEe----------CCCcEEEEeCCCCeeeEEeeccccc-------CeeEEEEeCCCcEEEEec-CCC
Q 005656            7 ALAFSSDGQPLLASGA----------SSGVISIWNLEKRRLQSVIREAHDN-------AIISLHFFANEPVLMSAS-ADN   68 (685)
Q Consensus         7 ~l~fspdg~~~latg~----------~dg~I~vwd~~~~~~~~~~~~~h~~-------~V~~l~~sp~~~~l~s~s-~D~   68 (685)
                      .++|+|||+ .|++++          .|+.|.+||..+++....+. .|..       ....++|+|||++|+++. .++
T Consensus        69 ~~a~spDg~-~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~-~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~  146 (368)
T d1mdah_          69 LAVAGHSGS-DFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSACLLFFLFGSS  146 (368)
T ss_dssp             EEEECTTSS-CEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSSCEEEEECSSS
T ss_pred             cceECCCCC-EEEEEcccCccccccccCCeEEEEECCCCcEeeeec-CCccceecccCCccceEECCCCCEEEEEeCCCC
Confidence            588999999 555533          46779999999999888776 3322       234689999999887765 579


Q ss_pred             cEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccc
Q 005656           69 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEE  148 (685)
Q Consensus        69 ~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (685)
                      .+.+||+...    +.......+.....   +......++..+.||.+.+|++............               
T Consensus       147 ~v~~~d~~~~----~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~---------------  204 (368)
T d1mdah_         147 AAAGLSVPGA----SDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA---------------  204 (368)
T ss_dssp             CEEEEEETTT----EEEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEECCC---------------
T ss_pred             eEEEEECCCC----cEeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCCceeeeeeec---------------
Confidence            9999999887    56655544444321   1123456777788999988887655432221100               


Q ss_pred             cccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEE
Q 005656          149 LKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIER  228 (685)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~  228 (685)
                                                                     .........+....+.+++..+.  ..++.+++
T Consensus       205 -----------------------------------------------~~~~~~~~~~~~~~~~~~g~~~~--~~~~~v~~  235 (368)
T d1mdah_         205 -----------------------------------------------QCTGAQNCSSQAAQANYPGMLVW--AVASSILQ  235 (368)
T ss_dssp             -----------------------------------------------CSCTTSCBCSCCEEETTTTEEEE--CBSSCCEE
T ss_pred             -----------------------------------------------ccccccccceeecccccCcEEEE--ecCCCEEE
Confidence                                                           00001122233445555554433  23455566


Q ss_pred             EECCCCccccccccccc----cccCCCCcCEEEEEEcCCCCEEEEEECC---------CeEEEEECCCCceEEEeecCCc
Q 005656          229 FNLQSGISRGSYLDMSE----RSNYAHNGEVVGVACDSTNTLMISAGYH---------GDIKVWDFKGRDLKSRWEVGCS  295 (685)
Q Consensus       229 ~d~~~~~~~~~~~~~~~----~~~~~h~~~v~~l~~~~~~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~~~~  295 (685)
                      +++..+...........    ............+++++++..++....+         ..|.+||..+++.+..+..+..
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~  315 (368)
T d1mdah_         236 GDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHD  315 (368)
T ss_dssp             EECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEE
T ss_pred             EeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCc
Confidence            66554433221110000    0000111223357788888876655322         3599999999999998888888


Q ss_pred             eeEEEEeecCC--EEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEE
Q 005656          296 LVKIVYHRVNG--LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCF  343 (685)
Q Consensus       296 i~~~~~~~~~~--~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~  343 (685)
                      +..++|+|||+  +++++..++.|++||..+++.++++..... .+.|++
T Consensus       316 ~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~-P~~l~~  364 (368)
T d1mdah_         316 SDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSV  364 (368)
T ss_dssp             ECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEEC
T ss_pred             eeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCC-CCEEEE
Confidence            99999999997  356667789999999999999999875433 344444

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.43  E-value=5.7e-11  Score=119.71  Aligned_cols=153  Identities=14%  Similarity=0.128  Sum_probs=103.0

Q ss_pred             CEEEEEEcCCCCEEEEEEC-CCeEEEEECCC-CceEE--Ee---ecCCceeEEEEeecCCEEEEEe-CCCeEEEEEcCCC
Q 005656          254 EVVGVACDSTNTLMISAGY-HGDIKVWDFKG-RDLKS--RW---EVGCSLVKIVYHRVNGLLATVA-DDLVIRLFDVVAL  325 (685)
Q Consensus       254 ~v~~l~~~~~~~~l~s~s~-dg~i~iwd~~~-~~~~~--~~---~~~~~i~~~~~~~~~~~l~~~~-~dg~I~i~d~~~~  325 (685)
                      .+.++.|+|+|+++++++. ...|.+|+... +....  ..   ........++|+|+++++++.. .+++|.+|++..+
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~  225 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence            4678999999998877763 45788887653 22221  11   2246788999999999776655 5789999998765


Q ss_pred             ee--EEE---Ee--------------cCCCCeEEEEEcCCCCEEEEEeC-C-----CcEEEEEcCCCceeeEE----e--
Q 005656          326 RM--VRK---FE--------------GHTDRITDFCFSEDGKWLLSSGM-D-----GSLRIWDVILARQIDAI----H--  374 (685)
Q Consensus       326 ~~--~~~---~~--------------~h~~~I~~l~~spdg~~l~s~s~-D-----g~I~iwd~~~~~~i~~~----~--  374 (685)
                      +.  +..   ..              .+......+.++|||++|+++.. +     +.|..|++.....+...    .  
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~  305 (365)
T d1jofa_         226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP  305 (365)
T ss_dssp             TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS
T ss_pred             CceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEE
Confidence            32  221   11              11123567899999999987642 2     23777877643222211    1  


Q ss_pred             -eccceEEEEEcC-CCCeEEEEEeCCCeEEEEEc
Q 005656          375 -VDVSITALSLSP-NMDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       375 -~~~~v~~v~~sp-dg~~Lat~~~d~~~I~lW~~  406 (685)
                       ......+++++| +|++|+++..+++.|.+|..
T Consensus       306 ~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~  339 (365)
T d1jofa_         306 TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred             cCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEE
Confidence             122378899998 89999999888889999974

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=6.1e-09  Score=99.61  Aligned_cols=237  Identities=10%  Similarity=0.013  Sum_probs=145.0

Q ss_pred             cEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecC-CCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCC
Q 005656           26 VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG  104 (685)
Q Consensus        26 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~-D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~  104 (685)
                      .|.|.|.........+  .+...+.+.+|||||+.||.... .+...+|..+...+..   ..+..+........|+|+|
T Consensus        20 ~l~i~d~dG~~~~~l~--~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~spdg   94 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVH--RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV---RQVASFPRHNGAPAFSPDG   94 (269)
T ss_dssp             EEEEEETTSCSCEEEE--EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE---EEEECCSSCEEEEEECTTS
T ss_pred             EEEEEcCCCCCcEEEe--cCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce---eEEeeeecccccceecCCC
Confidence            5888887765555554  36778899999999999986544 3444455555443322   2334567778889999999


Q ss_pred             CEEEEEeC-CCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEE
Q 005656          105 RHILSAGQ-DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW  183 (685)
Q Consensus       105 ~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  183 (685)
                      +.++.... ++...++........                                                        
T Consensus        95 ~~i~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------------  118 (269)
T d2hqsa1          95 SKLAFALSKTGSLNLYVMDLASGQ--------------------------------------------------------  118 (269)
T ss_dssp             SEEEEEECTTSSCEEEEEETTTCC--------------------------------------------------------
T ss_pred             CeeeEeeecCCccceeeccccccc--------------------------------------------------------
Confidence            98876553 222222222111000                                                        


Q ss_pred             EcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCC
Q 005656          184 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST  263 (685)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  263 (685)
                                                                          ....         ...........++++
T Consensus       119 ----------------------------------------------------~~~~---------~~~~~~~~~~~~~~~  137 (269)
T d2hqsa1         119 ----------------------------------------------------IRQV---------TDGRSNNTEPTWFPD  137 (269)
T ss_dssp             ----------------------------------------------------EEEC---------CCCSSCEEEEEECTT
T ss_pred             ----------------------------------------------------ceee---------eeccccccccccccc
Confidence                                                                0000         012222333444555


Q ss_pred             CCEEEEE-ECCC--eEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCC---eEEEEEcCCCeeEEEEecCCCC
Q 005656          264 NTLMISA-GYHG--DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDL---VIRLFDVVALRMVRKFEGHTDR  337 (685)
Q Consensus       264 ~~~l~s~-s~dg--~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~I~i~d~~~~~~~~~~~~h~~~  337 (685)
                      +..+... ..+|  .|...++..+................++|+++.++..+.++   .+.++|...+..  ....+...
T Consensus       138 ~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~  215 (269)
T d2hqsa1         138 SQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFL  215 (269)
T ss_dssp             SSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSS
T ss_pred             cccceecccccCCceEeeeecccccceeeecccccccccccccccceeEEEeecCCceeeeEeecccccc--eEeecCcc
Confidence            5443333 2333  45566666665554444556777889999999877766544   455556555543  33345566


Q ss_pred             eEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCceeeEEeeccceEEEEEcC
Q 005656          338 ITDFCFSEDGKWLLSSGM---DGSLRIWDVILARQIDAIHVDVSITALSLSP  386 (685)
Q Consensus       338 I~~l~~spdg~~l~s~s~---Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~sp  386 (685)
                      .....|||||++|+..+.   ...|+++++..+...........+...+|||
T Consensus       216 ~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         216 DETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             CEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECC
T ss_pred             ccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeCCCCcEEeEEeCC
Confidence            788899999999885553   3468999998877665555555688899998

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.23  E-value=3.9e-09  Score=105.92  Aligned_cols=163  Identities=7%  Similarity=-0.039  Sum_probs=106.5

Q ss_pred             CCCeEEEEEccCCCEEEEEecC-CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE-CCCeEEEE
Q 005656          202 PTAVKACTISACGNFAVLGTAG-GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVW  279 (685)
Q Consensus       202 ~~~v~~~~~s~~g~~l~~g~~d-g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iw  279 (685)
                      ...+.++.|+|+|+++++.... ..|.+|+............   ..........+.++|+|+++++++.. .+++|.+|
T Consensus       144 ~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~---~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~  220 (365)
T d1jofa_         144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGS---VDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEY  220 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEE---EECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccc---eeecCCCCceEEEEECCCCceEEEeccCCCEEEEE
Confidence            3457899999999988887653 5788887654322211100   01113456789999999999886655 67899999


Q ss_pred             ECCCCceEEEee-----c---------------CCceeEEEEeecCCEEEEEeC------CCeEEEEEcCCCeeEEEE--
Q 005656          280 DFKGRDLKSRWE-----V---------------GCSLVKIVYHRVNGLLATVAD------DLVIRLFDVVALRMVRKF--  331 (685)
Q Consensus       280 d~~~~~~~~~~~-----~---------------~~~i~~~~~~~~~~~l~~~~~------dg~I~i~d~~~~~~~~~~--  331 (685)
                      ++..+.......     .               ......+.++|+|++|+++..      .+.|..|++.....+...  
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~  300 (365)
T d1jofa_         221 VIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLF  300 (365)
T ss_dssp             EECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEE
T ss_pred             EecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeE
Confidence            987654322111     0               123557899999998887743      224777777643222211  


Q ss_pred             ----ecCCCCeEEEEEcC-CCCEEEEEe-CCCcEEEEEcCCC
Q 005656          332 ----EGHTDRITDFCFSE-DGKWLLSSG-MDGSLRIWDVILA  367 (685)
Q Consensus       332 ----~~h~~~I~~l~~sp-dg~~l~s~s-~Dg~I~iwd~~~~  367 (685)
                          ........+++++| +|++|+++. .++.|.+|++...
T Consensus       301 ~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         301 LSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             eeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence                12334567899998 899887775 6789999987644

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.20  E-value=2.6e-09  Score=101.82  Aligned_cols=237  Identities=7%  Similarity=-0.037  Sum_probs=152.3

Q ss_pred             cCeeEEEEeCCCcEEEEe-cCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCc
Q 005656           47 NAIISLHFFANEPVLMSA-SADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ  125 (685)
Q Consensus        47 ~~V~~l~~sp~~~~l~s~-s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~  125 (685)
                      -.-.++++.++|++.++. +..+.+..++.....   ...... +-...+..+++.++|+.+++....+.+++++-.+..
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~---~~~~~~-~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~   89 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG---TTVLPF-NGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ   89 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----C---EEECCC-CSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCce---EEEecc-CCccCceEEEEcCCCCEEEeeeeeceeeeeeeccce
Confidence            345899999999966654 455666666444321   222222 223456889999999876665555555444322211


Q ss_pred             eeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCe
Q 005656          126 QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAV  205 (685)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v  205 (685)
                      .....                                                                     ......
T Consensus        90 ~~~~~---------------------------------------------------------------------~~~~~p  100 (260)
T d1rwia_          90 TVLPF---------------------------------------------------------------------DGLNYP  100 (260)
T ss_dssp             EECCC---------------------------------------------------------------------CSCCSE
T ss_pred             eeeee---------------------------------------------------------------------eeeeec
Confidence            11000                                                                     223457


Q ss_pred             EEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Q 005656          206 KACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD  285 (685)
Q Consensus       206 ~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~  285 (685)
                      ..+++.++|++.++-..+..+..++...........        .......+++++++++.+++...++.|..++.....
T Consensus       101 ~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~--------~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~  172 (260)
T d1rwia_         101 EGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF--------TGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN  172 (260)
T ss_dssp             EEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCC--------CSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred             ccccccccceeEeeccccccccccccccceeeeeee--------cccCCcceeeecCCCCEeeeccccccccccccccce
Confidence            889999999988887778888888776544322211        222345689999999988888888899999987654


Q ss_pred             eEEEe-ecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005656          286 LKSRW-EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV  364 (685)
Q Consensus       286 ~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~  364 (685)
                      ..... ..-.....+++.++|+++++....+.|..++.............-.....|+++++|.++++-..+++|+.++.
T Consensus       173 ~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         173 QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             EEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             eeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence            43322 22255688999999998888888889998887654322222233456789999999988777677776766553

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.20  E-value=3.5e-09  Score=103.40  Aligned_cols=249  Identities=8%  Similarity=-0.010  Sum_probs=163.0

Q ss_pred             CCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCC
Q 005656           34 KRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD  113 (685)
Q Consensus        34 ~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d  113 (685)
                      ..+.+..+..+  ..+..+++.|||+++++...+++|..|+.+.   ...   .+......+.+++|.++|+.+++...+
T Consensus        17 ~~~v~~~~p~~--~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g---~~~---~~~~~~~~~~gla~~~dG~l~v~~~~~   88 (302)
T d2p4oa1          17 PAKIITSFPVN--TFLENLASAPDGTIFVTNHEVGEIVSITPDG---NQQ---IHATVEGKVSGLAFTSNGDLVATGWNA   88 (302)
T ss_dssp             CEEEEEEECTT--CCEEEEEECTTSCEEEEETTTTEEEEECTTC---CEE---EEEECSSEEEEEEECTTSCEEEEEECT
T ss_pred             cccEEEECCCC--CCcCCEEECCCCCEEEEeCCCCEEEEEeCCC---CEE---EEEcCCCCcceEEEcCCCCeEEEecCC
Confidence            34445555422  2588999999999999999899877765332   212   223455678999999999988888888


Q ss_pred             CceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCce
Q 005656          114 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH  193 (685)
Q Consensus       114 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  193 (685)
                      +.+..|+...........                                                   -+         
T Consensus        89 ~~~~~~~~~~~~~~~~~~---------------------------------------------------~~---------  108 (302)
T d2p4oa1          89 DSIPVVSLVKSDGTVETL---------------------------------------------------LT---------  108 (302)
T ss_dssp             TSCEEEEEECTTSCEEEE---------------------------------------------------EE---------
T ss_pred             ceEEEEEecccccceeec---------------------------------------------------cc---------
Confidence            888888865432111100                                                   00         


Q ss_pred             eecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccccccc--ccCCCCcCEEEEEEcCCCCEEEEEE
Q 005656          194 ILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSER--SNYAHNGEVVGVACDSTNTLMISAG  271 (685)
Q Consensus       194 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~--~~~~h~~~v~~l~~~~~~~~l~s~s  271 (685)
                           .........+++.++|+++++.+.++.+..++...+............  ..........++.++. +..+++.+
T Consensus       109 -----~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~  182 (302)
T d2p4oa1         109 -----LPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNT  182 (302)
T ss_dssp             -----CTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEET
T ss_pred             -----cCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecC
Confidence                 022345778999999999988888999999998877543322211111  1112234566777764 34555566


Q ss_pred             CCCeEEEEECCCCceE---EEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCe-eEEEEecCCCCeEEEEE---c
Q 005656          272 YHGDIKVWDFKGRDLK---SRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALR-MVRKFEGHTDRITDFCF---S  344 (685)
Q Consensus       272 ~dg~i~iwd~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~-~~~~~~~h~~~I~~l~~---s  344 (685)
                      ..+.|..++.......   ...........+++.++|+++++...++.|..++..... .+..........++++|   +
T Consensus       183 ~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~  262 (302)
T d2p4oa1         183 EKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTE  262 (302)
T ss_dssp             TTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCST
T ss_pred             CCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCC
Confidence            7888988887754322   222234556779999999988888888999999876432 12223334456899999   6


Q ss_pred             CCCCEEEEEeCC
Q 005656          345 EDGKWLLSSGMD  356 (685)
Q Consensus       345 pdg~~l~s~s~D  356 (685)
                      +|++.|+.++..
T Consensus       263 ~D~~~Lyvtt~~  274 (302)
T d2p4oa1         263 GDCTAIYVVTNG  274 (302)
T ss_dssp             TTTTEEEEEECT
T ss_pred             CCCCEEEEECCC
Confidence            788888766544

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.20  E-value=2e-08  Score=98.13  Aligned_cols=197  Identities=13%  Similarity=0.104  Sum_probs=133.0

Q ss_pred             CeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCC-CcCEEEEEEcCCCCEEEEEEC----------
Q 005656          204 AVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAH-NGEVVGVACDSTNTLMISAGY----------  272 (685)
Q Consensus       204 ~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~l~s~s~----------  272 (685)
                      ....+++.++|+.++++...+.|..++...+........     ..+. -...+.++++++|++.++-..          
T Consensus        72 ~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~-----~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~  146 (314)
T d1pjxa_          72 IPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKD-----SEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR  146 (314)
T ss_dssp             CEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBC-----TTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred             cceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEecc-----ccccccCCCcEEEECCCCCEEEecCccCcccccccc
Confidence            457899999999888888878899999876543322110     0011 123578999999987776432          


Q ss_pred             -----CCeEEEEECCCCceEEEeecCCceeEEEEeecCC-----EEEEEeCCCeEEEEEcCCCeeEE------EEec-CC
Q 005656          273 -----HGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG-----LLATVADDLVIRLFDVVALRMVR------KFEG-HT  335 (685)
Q Consensus       273 -----dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~-----~l~~~~~dg~I~i~d~~~~~~~~------~~~~-h~  335 (685)
                           +|.|..++.. ++.......-...+.++|+|++.     ++++-+..+.|+.||+.....+.      .+.+ +.
T Consensus       147 ~~~~~~G~v~~~~~d-g~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~  225 (314)
T d1pjxa_         147 SMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE  225 (314)
T ss_dssp             TTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS
T ss_pred             eeccCCceEEEEeec-CceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcccccc
Confidence                 2345555433 33333333224456789999875     44455678899999876432221      2222 22


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeecc-ceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656          336 DRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       336 ~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~-~v~~v~~spdg~~Lat~~~d~~~I~lW~~  406 (685)
                      ...-.+++..+|++.++....+.|.+||...+..+..+..+. .+++++|.||++.|+++..+.+.|+..+.
T Consensus       226 ~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~  297 (314)
T d1pjxa_         226 GGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             CEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             ccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEEC
Confidence            346689999999988887788999999988888888887764 49999999999877777666557776653

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.18  E-value=3.5e-09  Score=103.36  Aligned_cols=240  Identities=14%  Similarity=0.073  Sum_probs=157.1

Q ss_pred             cEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCc
Q 005656            4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPR   83 (685)
Q Consensus         4 ~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~   83 (685)
                      .+..++++|||+ ++++...++.|..|+..... . .+. .....+.+++|.++|+++++...++.+..|+.....+...
T Consensus        29 ~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g~~-~-~~~-~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~  104 (302)
T d2p4oa1          29 FLENLASAPDGT-IFVTNHEVGEIVSITPDGNQ-Q-IHA-TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE  104 (302)
T ss_dssp             CEEEEEECTTSC-EEEEETTTTEEEEECTTCCE-E-EEE-ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             CcCCEEECCCCC-EEEEeCCCCEEEEEeCCCCE-E-EEE-cCCCCcceEEEcCCCCeEEEecCCceEEEEEeccccccee
Confidence            467899999999 99999889999999865442 2 222 4667899999999999999988888999998877654443


Q ss_pred             eeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccccc
Q 005656           84 LLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIR  163 (685)
Q Consensus        84 ~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (685)
                      .+... .....+..+.+.++++++++.+.++.+..++...+..........                             
T Consensus       105 ~~~~~-~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~-----------------------------  154 (302)
T d2p4oa1         105 TLLTL-PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPM-----------------------------  154 (302)
T ss_dssp             EEEEC-TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGG-----------------------------
T ss_pred             ecccc-CCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCc-----------------------------
Confidence            33332 345567899999999888887778877777765443221111000                             


Q ss_pred             ccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccc
Q 005656          164 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDM  243 (685)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~  243 (685)
                                               ..    .............+.+.. +...++.+..+.|+.+++........... 
T Consensus       155 -------------------------~~----~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~-  203 (302)
T d2p4oa1         155 -------------------------LA----RSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEI-  203 (302)
T ss_dssp             -------------------------GS----CSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEE-
T ss_pred             -------------------------cc----eeeccCcccccccccccC-CceeeecCCCCeEEecccccccccccccc-
Confidence                                     00    000001223344555543 34555667788999998876543322210 


Q ss_pred             cccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEee--cC-CceeEEEE---eecCCEEEEEeCC
Q 005656          244 SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE--VG-CSLVKIVY---HRVNGLLATVADD  314 (685)
Q Consensus       244 ~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~-~~i~~~~~---~~~~~~l~~~~~d  314 (685)
                           ........+++++++|+++++...++.|..++.... ......  .. ...++++|   .+|++.|++++..
T Consensus       204 -----~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~-~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         204 -----FVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS-TTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             -----EEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC-EEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             -----ccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCC-EEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence                 022334567999999998887778899999987643 322222  22 56789999   6677877776544

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.17  E-value=3.5e-09  Score=100.84  Aligned_cols=191  Identities=7%  Similarity=-0.039  Sum_probs=131.9

Q ss_pred             CeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005656          204 AVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG  283 (685)
Q Consensus       204 ~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~  283 (685)
                      ....++++++|+..++...++.+++++-.++......         .......+++++++++++++-..+..+..++...
T Consensus        58 ~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~---------~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~  128 (260)
T d1rwia_          58 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF---------DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS  128 (260)
T ss_dssp             SCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCC---------CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTC
T ss_pred             CceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeee---------eeeeecccccccccceeEeecccccccccccccc
Confidence            4567889999998877777777766655544433222         2335678999999998877766667787777665


Q ss_pred             CceEEEe-ecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005656          284 RDLKSRW-EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIW  362 (685)
Q Consensus       284 ~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iw  362 (685)
                      ....... ..-.....++++++++++++...++.|..+|...................+++.++|+++++....+.|..+
T Consensus       129 ~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~  208 (260)
T d1rwia_         129 KTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKL  208 (260)
T ss_dssp             SSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEE
T ss_pred             ceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEE
Confidence            4432221 222456789999999988888888999999987654433333455678999999999988888888888888


Q ss_pred             EcCCCceeeEEeec--cceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656          363 DVILARQIDAIHVD--VSITALSLSPNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       363 d~~~~~~i~~~~~~--~~v~~v~~spdg~~Lat~~~d~~~I~lW~  405 (685)
                      +.... ....+...  ..+..++++++|.++++-..+ +.|+..+
T Consensus       209 ~~~~~-~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~-~rI~~i~  251 (260)
T d1rwia_         209 LAGST-TSTVLPFTGLNTPLAVAVDSDRTVYVADRGN-DRVVKLT  251 (260)
T ss_dssp             CTTCS-CCEECCCCSCCCEEEEEECTTCCEEEEEGGG-TEEEEEC
T ss_pred             eCCCC-eEEEEccCCCCCeEEEEEeCCCCEEEEECCC-CEEEEEe
Confidence            75543 22333222  347899999999866554443 4676654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.13  E-value=3.9e-08  Score=96.43  Aligned_cols=239  Identities=11%  Similarity=0.071  Sum_probs=148.2

Q ss_pred             EEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCC--CcEEEEEecCCCCCC
Q 005656            5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD--NSIKMWIFDTTDGDP   82 (685)
Q Consensus         5 V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D--~~v~iWd~~~~~~~~   82 (685)
                      +..++|.++|+ +.++-...|.|..|+.+++....... ........++|.++|+++++...+  ....++.++......
T Consensus        42 lEG~~~D~~G~-Ly~~D~~~g~I~ri~p~g~~~~~~~~-~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~  119 (319)
T d2dg1a1          42 LEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRPFV-SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL  119 (319)
T ss_dssp             EEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEE-CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred             cEeCEECCCCC-EEEEECCCCEEEEEECCCCeEEEEEe-CCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCcee
Confidence            45789999998 88887788999999998877666554 556678999999999988876443  445566655543322


Q ss_pred             ceeEecccCCCCCeEEEEecCCCEEEEEeCCC----ceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeee
Q 005656           83 RLLRFRSGHSAPPLCIRFYANGRHILSAGQDR----AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD  158 (685)
Q Consensus        83 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (685)
                      ........-...+..+.+.++|++.++.....    .-.+|.+...                                  
T Consensus       120 ~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~d----------------------------------  165 (319)
T d2dg1a1         120 QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD----------------------------------  165 (319)
T ss_dssp             EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT----------------------------------
T ss_pred             eeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecc----------------------------------
Confidence            22211111233467788888887655532111    1112211110                                  


Q ss_pred             cccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEE-ecCCcEEEEECCCCccc
Q 005656          159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAGGWIERFNLQSGISR  237 (685)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~dg~i~~~d~~~~~~~  237 (685)
                                        ...+...           .    ..-.....++|+|+++.++++ +..+.|+.|++......
T Consensus       166 ------------------g~~~~~~-----------~----~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~  212 (319)
T d2dg1a1         166 ------------------FRTVTPI-----------I----QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVT  212 (319)
T ss_dssp             ------------------SCCEEEE-----------E----EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSS
T ss_pred             ------------------cceeEEE-----------e----eccceeeeeeeccccceEEEecccCCceEEEEEcCCCce
Confidence                              0000000           0    112235679999999977555 56789999998643221


Q ss_pred             cccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCC-------ceeEEEEeecCCEEEE
Q 005656          238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGC-------SLVKIVYHRVNGLLAT  310 (685)
Q Consensus       238 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-------~i~~~~~~~~~~~l~~  310 (685)
                      ...................+++++++|++.++....+.|.+||- .++.+..+..+.       .+++++|.+++..+++
T Consensus       213 ~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~  291 (319)
T d2dg1a1         213 IQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLII  291 (319)
T ss_dssp             EEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEE
T ss_pred             eccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEE
Confidence            11110000011122234678999999998888888999999995 688888776542       4789999988876666


Q ss_pred             EeC
Q 005656          311 VAD  313 (685)
Q Consensus       311 ~~~  313 (685)
                      ...
T Consensus       292 t~~  294 (319)
T d2dg1a1         292 CSN  294 (319)
T ss_dssp             EEE
T ss_pred             EcC
Confidence            543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.11  E-value=4.7e-08  Score=93.86  Aligned_cols=188  Identities=14%  Similarity=0.192  Sum_probs=131.6

Q ss_pred             EEEEEccC-CCEEEEE-ecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005656          206 KACTISAC-GNFAVLG-TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG  283 (685)
Q Consensus       206 ~~~~~s~~-g~~l~~g-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~  283 (685)
                      ..+++.++ +..+++. +.++.|..++.. +.....+..       .......++++++++..+++....+.+.+++.. 
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~-------~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-  143 (279)
T d1q7fa_          73 NRVAVVRNSGDIIVTERSPTHQIQIYNQY-GQFVRKFGA-------TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-  143 (279)
T ss_dssp             EEEEEETTTTEEEEEECGGGCEEEEECTT-SCEEEEECT-------TTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             ccccccccccccceeccCCcccccccccc-ccceeecCC-------CcccccceeccccCCcEEEEeeccceeeEeccC-
Confidence            34444443 3344333 344566666653 433333321       345667899999999988887777888888854 


Q ss_pred             CceEEEeecC---CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEe--cCCCCeEEEEEcCCCCEEEEEeC-CC
Q 005656          284 RDLKSRWEVG---CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE--GHTDRITDFCFSEDGKWLLSSGM-DG  357 (685)
Q Consensus       284 ~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~--~h~~~I~~l~~spdg~~l~s~s~-Dg  357 (685)
                      ++.+..+...   .....+++.++++++++....+.|++||.. ++.+.++.  ++......|++.++|+++++-+. ++
T Consensus       144 g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~  222 (279)
T d1q7fa_         144 GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNF  222 (279)
T ss_dssp             SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSC
T ss_pred             CceeecccccccccccceeeeccceeEEeeeccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCc
Confidence            5555555332   567788999999988888889999999964 66677763  35556889999999997776543 45


Q ss_pred             cEEEEEcCCCceeeEEeecc---ceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656          358 SLRIWDVILARQIDAIHVDV---SITALSLSPNMDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       358 ~I~iwd~~~~~~i~~~~~~~---~v~~v~~spdg~~Lat~~~d~~~I~lW~~  406 (685)
                      .|.+|+ ++|+.+..+....   ....|++.|+|.++ ++..+ +.|++|..
T Consensus       223 ~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~l~-V~~~n-~~v~~fr~  271 (279)
T d1q7fa_         223 NLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVV-LASKD-YRLYIYRY  271 (279)
T ss_dssp             EEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEE-EEETT-TEEEEEEC
T ss_pred             EEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCCcEE-EEeCC-CeEEEEEe
Confidence            799998 6788888876543   38899999999754 45555 48999974

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.1e-08  Score=105.79  Aligned_cols=333  Identities=11%  Similarity=0.068  Sum_probs=181.8

Q ss_pred             EEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeec--ccccCeeEEEEeCCCcEEEEec---------CCCcEEEEEec
Q 005656            8 LAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIRE--AHDNAIISLHFFANEPVLMSAS---------ADNSIKMWIFD   76 (685)
Q Consensus         8 l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~l~s~s---------~D~~v~iWd~~   76 (685)
                      ..|.+++. ++.. ..+|.|.+||+.+++....+..  -..-.+....||||+++++.+.         ..+.+.++|+.
T Consensus        22 ~~W~~~~~-~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~   99 (465)
T d1xfda1          22 AKWISDTE-FIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIP   99 (465)
T ss_dssp             CCBSSSSC-BCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESS
T ss_pred             CEEeCCCc-EEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEcc
Confidence            45888887 5543 4678999999998876444431  1234678889999999877653         34667788877


Q ss_pred             CCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceee
Q 005656           77 TTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA  156 (685)
Q Consensus        77 ~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (685)
                      ++..  ..+.........+....|+|||+.|+... ++.|.+.+...+...+....+...                .+..
T Consensus       100 ~~~~--~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~----------------~i~n  160 (465)
T d1xfda1         100 HGDP--QSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEG----------------VIYN  160 (465)
T ss_dssp             SCCC--EECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTT----------------TEEE
T ss_pred             CCce--eeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcc----------------eeec
Confidence            6532  33333333445567789999999998776 567777777655443332211000                0000


Q ss_pred             eecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecC-C-----------
Q 005656          157 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG-G-----------  224 (685)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d-g-----------  224 (685)
                      -.      .+|                -..     .       .....-.++.|||||++|+....| .           
T Consensus       161 G~------~d~----------------vye-----e-------e~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~  206 (465)
T d1xfda1         161 GL------SDW----------------LYE-----E-------EILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYT  206 (465)
T ss_dssp             EE------CCH----------------HHH-----H-------TTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCS
T ss_pred             cc------cch----------------hhh-----h-------hhccccceEEECCCCCeEEEEEecccccceeeccccc
Confidence            00      000                000     0       001111344455555555543211 1           


Q ss_pred             ----------------------cEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC-C---CeEEE
Q 005656          225 ----------------------WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-H---GDIKV  278 (685)
Q Consensus       225 ----------------------~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-d---g~i~i  278 (685)
                                            .+.++|+.++........  ..........+..+.|.++++.++.... +   ..+.+
T Consensus       207 ~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~--~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~  284 (465)
T d1xfda1         207 GSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMP--PDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTL  284 (465)
T ss_dssp             SSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCC--CCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEE
T ss_pred             ccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEec--cCcCccccceeeeeEEcCCCeEEEEEEccccccceEEE
Confidence                                  355566655433221110  0001123335788999999876655432 2   25888


Q ss_pred             EECCCCceEEEeecC--Cc----eeEEEEeecCCEEE---EEeCCC--eEEEEEcC------CCeeEEEEecCCCCeEEE
Q 005656          279 WDFKGRDLKSRWEVG--CS----LVKIVYHRVNGLLA---TVADDL--VIRLFDVV------ALRMVRKFEGHTDRITDF  341 (685)
Q Consensus       279 wd~~~~~~~~~~~~~--~~----i~~~~~~~~~~~l~---~~~~dg--~I~i~d~~------~~~~~~~~~~h~~~I~~l  341 (685)
                      +|..+++....+...  ..    -....|+++|+.++   ..-.+|  .++.+++.      .++.++.+....-.|+.+
T Consensus       285 ~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i  364 (465)
T d1xfda1         285 CDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKI  364 (465)
T ss_dssp             EETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEE
T ss_pred             EcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEE
Confidence            999998776554321  21    23467889988432   222233  34444332      234444555445567765


Q ss_pred             -EEcCCCCEEE-EEeCC--CcEEEEEcC--CCceeeEEe----eccceEEEEEcCCCCeEEEEEeC
Q 005656          342 -CFSEDGKWLL-SSGMD--GSLRIWDVI--LARQIDAIH----VDVSITALSLSPNMDVLATAHVD  397 (685)
Q Consensus       342 -~~spdg~~l~-s~s~D--g~I~iwd~~--~~~~i~~~~----~~~~v~~v~~spdg~~Lat~~~d  397 (685)
                       +|+++++.|. ++..+  +.-.+|.+.  .+.....+.    ......++.|||+|++++..+..
T Consensus       365 ~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~  430 (465)
T d1xfda1         365 LAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEG  430 (465)
T ss_dssp             EEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCS
T ss_pred             EEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEeec
Confidence             6888887765 44433  233455543  333222222    22346799999999999877654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.08  E-value=1e-07  Score=91.46  Aligned_cols=239  Identities=12%  Similarity=0.161  Sum_probs=155.6

Q ss_pred             EEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeec-----ccccCeeEEEEeCCCc-EEEE-ecCCCcEEEEEecC
Q 005656            5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIRE-----AHDNAIISLHFFANEP-VLMS-ASADNSIKMWIFDT   77 (685)
Q Consensus         5 V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~-----~h~~~V~~l~~sp~~~-~l~s-~s~D~~v~iWd~~~   77 (685)
                      -+.|+++++|+ ++++-..++.|++||.+ ++.+..+..     +....-..+++.++.. .+++ .+.++.|..++.+.
T Consensus        25 P~gvavd~dg~-i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g  102 (279)
T d1q7fa_          25 PSGVAVNAQND-IIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG  102 (279)
T ss_dssp             EEEEEECTTCC-EEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS
T ss_pred             ccEEEEcCCCC-EEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccccc
Confidence            47899999998 77777778899999965 555555431     1112345566666543 4433 33445666664322


Q ss_pred             CCCCCceeEec-ccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceee
Q 005656           78 TDGDPRLLRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA  156 (685)
Q Consensus        78 ~~~~~~~~~~~-~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (685)
                           .....+ ......+..+++.++|..+++....+.+.+++.. ++....+.                         
T Consensus       103 -----~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g-------------------------  151 (279)
T d1q7fa_         103 -----QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFG-------------------------  151 (279)
T ss_dssp             -----CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEE-------------------------
T ss_pred             -----cceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cceeeccc-------------------------
Confidence                 233322 2345567788888888877766666666665532 21111110                         


Q ss_pred             eecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcc
Q 005656          157 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS  236 (685)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~  236 (685)
                                                  .             ..+......+++.++|+.+++....+.|++||.. |..
T Consensus       152 ----------------------------~-------------~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~  189 (279)
T d1q7fa_         152 ----------------------------C-------------SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQY  189 (279)
T ss_dssp             ----------------------------C-------------TTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCE
T ss_pred             ----------------------------c-------------cccccccceeeeccceeEEeeeccccceeeeecC-Cce
Confidence                                        0             0334567888999999999999999999999965 444


Q ss_pred             ccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC-CCeEEEEECCCCceEEEeecC---CceeEEEEeecCCEEEEEe
Q 005656          237 RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-HGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVA  312 (685)
Q Consensus       237 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~  312 (685)
                      ...+.      ..++.....+|+++++|+.+++-.. ++.|.+|+ .+++.+..+...   .....+++.|+|.++ +++
T Consensus       190 ~~~~g------~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~l~-V~~  261 (279)
T d1q7fa_         190 LRQIG------GEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVV-LAS  261 (279)
T ss_dssp             EEEES------CTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEE-EEE
T ss_pred             eeeec------ccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCCcEE-EEe
Confidence            44431      1145556789999999997776544 45799998 457777766543   457889999998754 556


Q ss_pred             CCCeEEEEEcCCCe
Q 005656          313 DDLVIRLFDVVALR  326 (685)
Q Consensus       313 ~dg~I~i~d~~~~~  326 (685)
                      .++.|++|......
T Consensus       262 ~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         262 KDYRLYIYRYVQLA  275 (279)
T ss_dssp             TTTEEEEEECSCCC
T ss_pred             CCCeEEEEEeeeec
Confidence            78999999877643

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.08  E-value=6.4e-08  Score=94.48  Aligned_cols=261  Identities=11%  Similarity=0.083  Sum_probs=149.6

Q ss_pred             EEEEEEccCCCCEEEEEeC-------CCcEEEEeCCCCeeeEEeec---ccccCeeEEEEeCCCcEEEEecCCCcEEEEE
Q 005656            5 VTALAFSSDGQPLLASGAS-------SGVISIWNLEKRRLQSVIRE---AHDNAIISLHFFANEPVLMSASADNSIKMWI   74 (685)
Q Consensus         5 V~~l~fspdg~~~latg~~-------dg~I~vwd~~~~~~~~~~~~---~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd   74 (685)
                      .-.++|.++|+ +.++...       +|.|..||..++........   .-.+.-..++|.++++.|+++...+.+...+
T Consensus        20 ~EGpa~d~dG~-ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~   98 (314)
T d1pjxa_          20 AEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQ   98 (314)
T ss_dssp             CEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred             CeEeEEeCCCC-EEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEe
Confidence            45689999999 5555322       46799999988765443320   1123356899999999888777767777776


Q ss_pred             ecCCCCCCceeEe-cccC-CCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccC
Q 005656           75 FDTTDGDPRLLRF-RSGH-SAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK  152 (685)
Q Consensus        75 ~~~~~~~~~~~~~-~~~h-~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (685)
                      .+...  ...+.. ..+. -..++.+++.++|+..++-.. +....|+......                          
T Consensus        99 ~~g~~--~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~-~~~~~~~~~~~~~--------------------------  149 (314)
T d1pjxa_          99 TDGTF--EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPA-GEVAPADYTRSMQ--------------------------  149 (314)
T ss_dssp             TTSCE--EECCSBCTTSCBCBCCCEEEECTTSCEEEEECB-CBCTTSCCCBTTS--------------------------
T ss_pred             CCCcE--EEEEeccccccccCCCcEEEECCCCCEEEecCc-cCcccccccceec--------------------------
Confidence            55431  011110 0111 113577889888876665321 1111111000000                          


Q ss_pred             ceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCC----EE-EEEecCCcEE
Q 005656          153 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN----FA-VLGTAGGWIE  227 (685)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~----~l-~~g~~dg~i~  227 (685)
                                            ...+.++.++.... ... ..    ........++|+++++    ++ ++-+..+.|+
T Consensus       150 ----------------------~~~G~v~~~~~dg~-~~~-~~----~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~  201 (314)
T d1pjxa_         150 ----------------------EKFGSIYCFTTDGQ-MIQ-VD----TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLW  201 (314)
T ss_dssp             ----------------------SSCEEEEEECTTSC-EEE-EE----EEESSEEEEEEEECTTSCEEEEEEEETTTTEEE
T ss_pred             ----------------------cCCceEEEEeecCc-eeE-ee----CCcceeeeeEECCCCCcceeEEEEEeecccceE
Confidence                                  00011111111000 000 00    0112345788888764    44 4556778999


Q ss_pred             EEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecCC
Q 005656          228 RFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNG  306 (685)
Q Consensus       228 ~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~  306 (685)
                      .|++............ ......+.....+++++.+|++.++....+.|.+||.+++.....+..+ ...++++|.|+++
T Consensus       202 ~~d~~~~g~~~~~~~~-~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~  280 (314)
T d1pjxa_         202 SYDIKGPAKIENKKVW-GHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTK  280 (314)
T ss_dssp             EEEEEETTEEEEEEEE-EECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSS
T ss_pred             EeeccCccccceeeEE-EEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCC
Confidence            9987644322111000 0001123344678999999998888778899999999888877777665 6788999999987


Q ss_pred             -EEEEEeCCCeEEEEEcCC
Q 005656          307 -LLATVADDLVIRLFDVVA  324 (685)
Q Consensus       307 -~l~~~~~dg~I~i~d~~~  324 (685)
                       ++++.+.++.|..+++..
T Consensus       281 ~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         281 TIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEEEETTTTEEEEEECSS
T ss_pred             EEEEEECCCCcEEEEECCC
Confidence             455566778888888653

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.04  E-value=1.1e-07  Score=90.47  Aligned_cols=219  Identities=15%  Similarity=0.157  Sum_probs=136.3

Q ss_pred             CCcEEEEEEccCCCCEEEE-EeCCC--cEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecC-CCcEEEEEecC
Q 005656            2 RGAVTALAFSSDGQPLLAS-GASSG--VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDT   77 (685)
Q Consensus         2 ~~~V~~l~fspdg~~~lat-g~~dg--~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~-D~~v~iWd~~~   77 (685)
                      .+.+.+.+|||||+ .||- ....+  .+.+.+..++......  .+.+......|+|+|..++.... ++...++....
T Consensus        38 ~~~~~sP~wSPDGk-~IAf~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~  114 (269)
T d2hqsa1          38 PQPLMSPAWSPDGS-KLAYVTFESGRSALVIQTLANGAVRQVA--SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL  114 (269)
T ss_dssp             SSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTTCCEEEEE--CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred             CCceeeeEECCCCC-EEEEEEeeccCcceeeeecccCceeEEe--eeecccccceecCCCCeeeEeeecCCccceeeccc
Confidence            34677899999999 5554 33333  4666677666655444  57788899999999998776554 44444444443


Q ss_pred             CCCCCceeEecccCCCCCeEEEEecCCCEEE-EEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceee
Q 005656           78 TDGDPRLLRFRSGHSAPPLCIRFYANGRHIL-SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA  156 (685)
Q Consensus        78 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (685)
                      ...  . ......+........+++++..++ +...+|...+|...........                          
T Consensus       115 ~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~--------------------------  165 (269)
T d2hqsa1         115 ASG--Q-IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR--------------------------  165 (269)
T ss_dssp             TTC--C-EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE--------------------------
T ss_pred             ccc--c-ceeeeeccccccccccccccccceecccccCCceEeeeeccccccee--------------------------
Confidence            321  1 222223344445556777766544 4445665555544322211100                          


Q ss_pred             eecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCC---cEEEEECCC
Q 005656          157 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG---WIERFNLQS  233 (685)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg---~i~~~d~~~  233 (685)
                                                               ............++|+|+.++..+.++   .+.+++...
T Consensus       166 -----------------------------------------~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~  204 (269)
T d2hqsa1         166 -----------------------------------------ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT  204 (269)
T ss_dssp             -----------------------------------------CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT
T ss_pred             -----------------------------------------eecccccccccccccccceeEEEeecCCceeeeEeeccc
Confidence                                                     002344566778999999988876654   455556555


Q ss_pred             CccccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC---CCeEEEEECCCCceEEEeecCCceeEEEEee
Q 005656          234 GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY---HGDIKVWDFKGRDLKSRWEVGCSLVKIVYHR  303 (685)
Q Consensus       234 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~  303 (685)
                      +.....          .+........|+|+|+.|+..+.   ...|+++++.++...........+...+|+|
T Consensus       205 ~~~~~~----------~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         205 GGVQVL----------SSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             CCEEEC----------CCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECC
T ss_pred             ccceEe----------ecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeCCCCcEEeEEeCC
Confidence            543222          34556678899999998876553   3468999999887766656667778888988

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.04  E-value=2.3e-07  Score=90.75  Aligned_cols=189  Identities=12%  Similarity=0.027  Sum_probs=126.0

Q ss_pred             CCCeEEEEEccCCCEEEEEec----CCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC-----
Q 005656          202 PTAVKACTISACGNFAVLGTA----GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-----  272 (685)
Q Consensus       202 ~~~v~~~~~s~~g~~l~~g~~----dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-----  272 (685)
                      ......++++++|+.+++...    .+.+...+...+........      ..-......++++++|++.++...     
T Consensus        81 ~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~------~~~~~~~nd~~~d~~G~l~vtd~~~~~~~  154 (319)
T d2dg1a1          81 KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIED------LSTAYCIDDMVFDSKGGFYFTDFRGYSTN  154 (319)
T ss_dssp             SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECS------SSSCCCEEEEEECTTSCEEEEECCCBTTB
T ss_pred             CCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccC------CCcccCCcceeEEeccceeeccccccccc
Confidence            345678999999998877643    34466666665544333210      022345788999999986665432     


Q ss_pred             -CCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEE-eCCCeEEEEEcCCC-eeEEE-------EecCCCCeEEEE
Q 005656          273 -HGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV-ADDLVIRLFDVVAL-RMVRK-------FEGHTDRITDFC  342 (685)
Q Consensus       273 -dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~I~i~d~~~~-~~~~~-------~~~h~~~I~~l~  342 (685)
                       .+.+..++...+........-.....++|+|+++.|+++ +..+.|+.||+... .....       ........-.++
T Consensus       155 ~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~  234 (319)
T d2dg1a1         155 PLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCC  234 (319)
T ss_dssp             CCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEE
T ss_pred             CcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeee
Confidence             234666665544433333333456789999999866554 56789999998632 11111       111223367899


Q ss_pred             EcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeecc-------ceEEEEEcCCCCeEEEEEeC
Q 005656          343 FSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-------SITALSLSPNMDVLATAHVD  397 (685)
Q Consensus       343 ~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~-------~v~~v~~spdg~~Lat~~~d  397 (685)
                      +.++|++.++....+.|.+|| +.|+.+..+..+.       .+++++|.|++..++++..+
T Consensus       235 vD~~G~l~Va~~~~g~V~~~~-p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~  295 (319)
T d2dg1a1         235 IDSDDNLYVAMYGQGRVLVFN-KRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  295 (319)
T ss_dssp             EBTTCCEEEEEETTTEEEEEC-TTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             EcCCCCEEEEEcCCCEEEEEC-CCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCC
Confidence            999999888888899999999 6899999887643       27899999998888777654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.83  E-value=2.7e-06  Score=81.81  Aligned_cols=188  Identities=9%  Similarity=-0.026  Sum_probs=131.6

Q ss_pred             CCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC----CCeEE
Q 005656          202 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY----HGDIK  277 (685)
Q Consensus       202 ~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~----dg~i~  277 (685)
                      +..+.++++.++|+++++ +.+ .+.++|..+++.......    ........++.+.++|+|++.++...    .+.-.
T Consensus        58 ~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~----~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~  131 (295)
T d2ghsa1          58 PFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAEL----ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGS  131 (295)
T ss_dssp             SSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECS----STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEE
T ss_pred             CCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeee----ecCCCcccceeeEECCCCCEEEEecccccccccee
Confidence            345778888888877665 444 599999998876433211    01122346889999999997766543    23456


Q ss_pred             EEECCCCceEEEeecCCceeEEEEeecCCEEEE-EeCCCeEEEEEcCCC--------eeEEEEecCCCCeEEEEEcCCCC
Q 005656          278 VWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLAT-VADDLVIRLFDVVAL--------RMVRKFEGHTDRITDFCFSEDGK  348 (685)
Q Consensus       278 iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~I~i~d~~~~--------~~~~~~~~h~~~I~~l~~spdg~  348 (685)
                      +|.+..++.......-.....++++++++.++. -+..+.|+.|++...        .....+.+..+....+++..+|+
T Consensus       132 l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~Gn  211 (295)
T d2ghsa1         132 IYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH  211 (295)
T ss_dssp             EEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC
T ss_pred             EeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCC
Confidence            677767766555544456778999999986554 456788999987421        11222334455688999999999


Q ss_pred             EEEEEeCCCcEEEEEcCCCceeeEEeeccc-eEEEEEc-CCCCeEEEEEe
Q 005656          349 WLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLS-PNMDVLATAHV  396 (685)
Q Consensus       349 ~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~s-pdg~~Lat~~~  396 (685)
                      +.++.-..+.|..|| +.|+.+..+..+.. +++++|- ||.+.|++++.
T Consensus       212 lWva~~~~g~V~~~d-p~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         212 IWNARWGEGAVDRYD-TDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             EEEEEETTTEEEEEC-TTCCEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             EEeeeeCCCceEEec-CCCcEeeEecCCCCceEEEEEeCCCCCEEEEEEC
Confidence            777776778899999 68999999998765 9999995 67777776654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=6.8e-07  Score=92.07  Aligned_cols=330  Identities=10%  Similarity=0.042  Sum_probs=177.7

Q ss_pred             cEEEEEEccCCCCEEEEE---------eCCCcEEEEeCCCCeeeEEee-cccccCeeEEEEeCCCcEEEEecCCCcEEEE
Q 005656            4 AVTALAFSSDGQPLLASG---------ASSGVISIWNLEKRRLQSVIR-EAHDNAIISLHFFANEPVLMSASADNSIKMW   73 (685)
Q Consensus         4 ~V~~l~fspdg~~~latg---------~~dg~I~vwd~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iW   73 (685)
                      .+....|||||+ .++.+         +..|.+.++|+.++....... ....+.+....|||||+.||-.. ++.|.+.
T Consensus        62 ~~~~~~~SpD~~-~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~  139 (465)
T d1xfda1          62 RAIRYEISPDRE-YALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYC  139 (465)
T ss_dssp             TCSEEEECTTSS-EEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEE
T ss_pred             ccceeEECCCCC-eEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEE
Confidence            355678999999 44443         345789999999887654432 12345567789999999888775 4566666


Q ss_pred             EecCCCCCCceeEecccCC-----------------CCCeEEEEecCCCEEEEEeC-CCceEEEEeecCceeeEechhhH
Q 005656           74 IFDTTDGDPRLLRFRSGHS-----------------APPLCIRFYANGRHILSAGQ-DRAFRLFSVIQDQQSRELSQRHV  135 (685)
Q Consensus        74 d~~~~~~~~~~~~~~~~h~-----------------~~v~~i~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~  135 (685)
                      +...+  ....+. ..+..                 +.-..+.|||||++|+.... +..+..+.+......        
T Consensus       140 ~~~~~--~~~~lt-~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~--------  208 (465)
T d1xfda1         140 AHVGK--QAIRVV-STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGS--------  208 (465)
T ss_dssp             SSSSS--CCEEEE-CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSS--------
T ss_pred             ecCCC--ceEEEe-cccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeeccccccc--------
Confidence            54433  111111 11211                 11256789999999998764 455666655321100        


Q ss_pred             HHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCC--CCCCCeEEEEEccC
Q 005656          136 AKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCP--ENPTAVKACTISAC  213 (685)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~  213 (685)
                                    ..+....+.-...  .+.       .....+.++++...........+..  .....+..+.|+++
T Consensus       209 --------------~~p~~~~~~Yp~~--G~~-------np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d  265 (465)
T d1xfda1         209 --------------IYPTVKPYHYPKA--GSE-------NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATS  265 (465)
T ss_dssp             --------------SSCCCEEEECCBT--TSC-------CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSS
T ss_pred             --------------ccceeeeeecccc--CCC-------CCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCC
Confidence                          0000000000000  000       0012455666654432221111110  11224678899999


Q ss_pred             CCEEEEEecC----CcEEEEECCCCccccccccccccccCCCCcC----EEEEEEcCCCCEEEE--EE-CCC--eEEEEE
Q 005656          214 GNFAVLGTAG----GWIERFNLQSGISRGSYLDMSERSNYAHNGE----VVGVACDSTNTLMIS--AG-YHG--DIKVWD  280 (685)
Q Consensus       214 g~~l~~g~~d----g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~----v~~l~~~~~~~~l~s--~s-~dg--~i~iwd  280 (685)
                      ++.++....-    ..+.++|..+|.....+..       ...+.    -....|+++|+.++.  .+ .+|  .+...+
T Consensus       266 ~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e-------~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~  338 (465)
T d1xfda1         266 TKVAVTWLNRAQNVSILTLCDATTGVCTKKHED-------ESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHIT  338 (465)
T ss_dssp             SEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE-------ECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEE
T ss_pred             CeEEEEEEccccccceEEEEcCCCCcEEEEEEE-------cCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEE
Confidence            9876665432    2688899999987654431       11111    124578889875332  22 333  344333


Q ss_pred             CC------CCceEEEeec-CCceeEE-EEeecCCEEE-EEeCCC----eEEEEEcCCCeeEEEEe---cCCCCeEEEEEc
Q 005656          281 FK------GRDLKSRWEV-GCSLVKI-VYHRVNGLLA-TVADDL----VIRLFDVVALRMVRKFE---GHTDRITDFCFS  344 (685)
Q Consensus       281 ~~------~~~~~~~~~~-~~~i~~~-~~~~~~~~l~-~~~~dg----~I~i~d~~~~~~~~~~~---~h~~~I~~l~~s  344 (685)
                      +.      .+.....+.. .-.|..+ .++.+++.++ ++..++    .++-.++..+.....+.   ........+.||
T Consensus       339 ~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S  418 (465)
T d1xfda1         339 VSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFS  418 (465)
T ss_dssp             EECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEEC
T ss_pred             eccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEEC
Confidence            21      2223333333 3445554 5788877554 444332    34444544433222222   234456789999


Q ss_pred             CCCCEEEEEeCC---CcEEEEEcCCCceeeEEeec
Q 005656          345 EDGKWLLSSGMD---GSLRIWDVILARQIDAIHVD  376 (685)
Q Consensus       345 pdg~~l~s~s~D---g~I~iwd~~~~~~i~~~~~~  376 (685)
                      |+|++++.....   -.+.+++..+++.+..+...
T Consensus       419 ~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~Le~N  453 (465)
T d1xfda1         419 HSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDLETN  453 (465)
T ss_dssp             TTSSEEEEECCSSSSCCEEEEETTTCCEEEEEECC
T ss_pred             CCCCEEEEEeecCCCCeEEEEECCCCCEEEEEcCC
Confidence            999998844332   45888898888888877543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.62  E-value=1.5e-05  Score=76.42  Aligned_cols=228  Identities=12%  Similarity=0.031  Sum_probs=139.8

Q ss_pred             EEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeE
Q 005656            7 ALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLR   86 (685)
Q Consensus         7 ~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~   86 (685)
                      +..|++....+..+--..+.|.-||.++++... +.  ....+.++++.+++.+++++ .+ .+..+|..++.  .+.+.
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~-~~--~~~~~~~i~~~~dg~l~va~-~~-gl~~~d~~tg~--~~~l~   94 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKTV-HA--LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGV--LTLHA   94 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE--CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCC--EEEEE
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEEE-EE--CCCCcEEEEEecCCCEEEEE-eC-ccEEeecccce--eeEEe
Confidence            345776444266665567889999999887542 22  34578899999999877764 34 57778766542  22222


Q ss_pred             ecccC--CCCCeEEEEecCCCEEEEEeCC----CceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656           87 FRSGH--SAPPLCIRFYANGRHILSAGQD----RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  160 (685)
Q Consensus        87 ~~~~h--~~~v~~i~~~~~~~~l~s~s~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (685)
                      .....  ...++.+.+.|+|++.++....    +.-.+|.+..++.....                              
T Consensus        95 ~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~------------------------------  144 (295)
T d2ghsa1          95 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLF------------------------------  144 (295)
T ss_dssp             CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEE------------------------------
T ss_pred             eeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEe------------------------------
Confidence            22111  1246778888888766654322    23344444433221111                              


Q ss_pred             cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEE-ecCCcEEEEECCCCccccc
Q 005656          161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAGGWIERFNLQSGISRGS  239 (685)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~dg~i~~~d~~~~~~~~~  239 (685)
                                                             ........++++++++.+++. +..+.|+.|++........
T Consensus       145 ---------------------------------------~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~  185 (295)
T d2ghsa1         145 ---------------------------------------ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPT  185 (295)
T ss_dssp             ---------------------------------------EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBS
T ss_pred             ---------------------------------------eccCCcceeeecCCCceEEEeecccceeeEeeecccccccc
Confidence                                                   112235678999999876555 5578899998753221110


Q ss_pred             cccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEe-ecCCEEEEE
Q 005656          240 YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYH-RVNGLLATV  311 (685)
Q Consensus       240 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~-~~~~~l~~~  311 (685)
                      -.........+..+...+++++.+|++.++.-..+.|..||- .++.+..+..+ ..+++++|- ++.+.|++.
T Consensus       186 ~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvT  258 (295)
T d2ghsa1         186 GKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVT  258 (295)
T ss_dssp             SCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEE
T ss_pred             cceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCCEEEEE
Confidence            000000011134456789999999987777667789999994 67888888876 568999996 566655443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.59  E-value=1.8e-06  Score=82.16  Aligned_cols=99  Identities=14%  Similarity=0.243  Sum_probs=64.5

Q ss_pred             EEccC--CCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEec----CCCcEEEEEecCCCCCC
Q 005656            9 AFSSD--GQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS----ADNSIKMWIFDTTDGDP   82 (685)
Q Consensus         9 ~fspd--g~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s----~D~~v~iWd~~~~~~~~   82 (685)
                      ..|||  |+ .+|-. .+|.|.+.|+.+++.... . .+.+.+...+|||||+.||..+    .+....+|.++...+..
T Consensus         5 ~~sPdi~G~-~v~f~-~~~dl~~~d~~~g~~~~L-t-~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~   80 (281)
T d1k32a2           5 LLNPDIHGD-RIIFV-CCDDLWEHDLKSGSTRKI-V-SNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI   80 (281)
T ss_dssp             CEEEEEETT-EEEEE-ETTEEEEEETTTCCEEEE-E-CSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE
T ss_pred             ccCCCCCCC-EEEEE-eCCcEEEEECCCCCEEEE-e-cCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCce
Confidence            46899  99 44433 357799999999887644 3 5677889999999999888543    23334566555544433


Q ss_pred             ceeEecc----cCCCCCeEEEEecCCCEEEEEe
Q 005656           83 RLLRFRS----GHSAPPLCIRFYANGRHILSAG  111 (685)
Q Consensus        83 ~~~~~~~----~h~~~v~~i~~~~~~~~l~s~s  111 (685)
                      +.+....    ..........|+|+|+.|+...
T Consensus        81 ~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          81 KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             EECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             EEeeecCCCccCccccccccccCCCCCEEEEEE
Confidence            3322111    1223457788999999888654

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.33  E-value=1.7e-05  Score=76.94  Aligned_cols=160  Identities=16%  Similarity=0.102  Sum_probs=103.3

Q ss_pred             EEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC--------------------------------
Q 005656          226 IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH--------------------------------  273 (685)
Q Consensus       226 i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d--------------------------------  273 (685)
                      +..+|..+.+...+..         -.+....+.++++|+++++.+.+                                
T Consensus       175 ~t~ID~~tm~V~~QV~---------V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~  245 (459)
T d1fwxa2         175 FTAVDADKWEVAWQVL---------VSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA  245 (459)
T ss_dssp             EEEEETTTTEEEEEEE---------ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEecCCceEEEEee---------eCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhc
Confidence            5567777766655542         12345578889999988887643                                


Q ss_pred             ------CeEEEEECCC---CceEEEeecCCceeEEEEeecCCEEEEEe-CCCeEEEEEcCCC------------eeEEEE
Q 005656          274 ------GDIKVWDFKG---RDLKSRWEVGCSLVKIVYHRVNGLLATVA-DDLVIRLFDVVAL------------RMVRKF  331 (685)
Q Consensus       274 ------g~i~iwd~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~I~i~d~~~~------------~~~~~~  331 (685)
                            +.+.+-|.+.   ......+..+.....+.++|||+++++++ -+.++.|+|++.-            ..+...
T Consensus       246 Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~  325 (459)
T d1fwxa2         246 GDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP  325 (459)
T ss_dssp             TCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECC
T ss_pred             CCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeec
Confidence                  1233444332   12333445555667889999999877765 4889999998631            111222


Q ss_pred             ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC----------ceeeEEeeccceEEEE------EcCCCCeEEEEE
Q 005656          332 EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA----------RQIDAIHVDVSITALS------LSPNMDVLATAH  395 (685)
Q Consensus       332 ~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~----------~~i~~~~~~~~v~~v~------~spdg~~Lat~~  395 (685)
                      . ..-.....+|...|.-..|---|..|.-|++...          ..++.+..+..+-.+.      ..|||++|++..
T Consensus       326 e-lglgPLht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~n  404 (459)
T d1fwxa2         326 E-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS  404 (459)
T ss_dssp             B-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred             c-cCcCccccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEec
Confidence            2 2233456789888865556668999999998543          5566666666655553      468999999985

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.28  E-value=0.00012  Score=76.82  Aligned_cols=172  Identities=12%  Similarity=0.016  Sum_probs=104.8

Q ss_pred             CcEEEEECCCCcccccccccccccc---CCCCcCEEEEEEcCCCC---EEEEEECCCeEEEEECCCCceEEEeecC----
Q 005656          224 GWIERFNLQSGISRGSYLDMSERSN---YAHNGEVVGVACDSTNT---LMISAGYHGDIKVWDFKGRDLKSRWEVG----  293 (685)
Q Consensus       224 g~i~~~d~~~~~~~~~~~~~~~~~~---~~h~~~v~~l~~~~~~~---~l~s~s~dg~i~iwd~~~~~~~~~~~~~----  293 (685)
                      ..+.-.|+.+|+....+........   ..+......+..  +++   .++.++.+|.+.++|..+++++......    
T Consensus       272 ~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~--~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~  349 (571)
T d2ad6a1         272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPV--NGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVN  349 (571)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEE--TTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCC
T ss_pred             cceeeeeccchhheecccccCccccccccccccceeeeec--cCccccceeeccccceEEEEecCCCcEeeeeccCCccc
Confidence            4577778888887766542111100   011111222222  332   4667789999999999999876432211    


Q ss_pred             ------------------------------------CceeEEEEeecCCEEEEEeCC-----------------------
Q 005656          294 ------------------------------------CSLVKIVYHRVNGLLATVADD-----------------------  314 (685)
Q Consensus       294 ------------------------------------~~i~~~~~~~~~~~l~~~~~d-----------------------  314 (685)
                                                          ..-...+++|+..++++...+                       
T Consensus       350 ~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (571)
T d2ad6a1         350 VFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATL  429 (571)
T ss_dssp             SEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred             ccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccce
Confidence                                                000125677777766654432                       


Q ss_pred             --------------CeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccceE
Q 005656          315 --------------LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSIT  380 (685)
Q Consensus       315 --------------g~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~  380 (685)
                                    |.|.-+|+.+++.+-+...-. +..+-..+-.+.++++|+.||.++.+|..+|+.+-.+.....+.
T Consensus       430 ~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~-~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~  508 (571)
T d2ad6a1         430 AMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGI  508 (571)
T ss_dssp             EEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred             eeccccCCcccCCcccEEEeccCCCceeeEcCCCC-CCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCce
Confidence                          467788888888876665221 11111122246688889999999999999999999998776643


Q ss_pred             --EEEEcCCCC-eEEEEEeCC
Q 005656          381 --ALSLSPNMD-VLATAHVDQ  398 (685)
Q Consensus       381 --~v~~spdg~-~Lat~~~d~  398 (685)
                        -+.|..||+ |+++....|
T Consensus       509 a~P~ty~~dGkqYi~v~~g~G  529 (571)
T d2ad6a1         509 GSPMTYSFKGKQYIGSMYGVG  529 (571)
T ss_dssp             SCCEEEEETTEEEEEEEECCC
T ss_pred             ecceEEEECCEEEEEEEeccC
Confidence              366667886 666655433

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.24  E-value=0.00017  Score=69.91  Aligned_cols=193  Identities=11%  Similarity=0.073  Sum_probs=128.7

Q ss_pred             EEEEcc---CCCEEEEEe-cCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEc--CCCCEEEEEECC-------
Q 005656          207 ACTISA---CGNFAVLGT-AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACD--STNTLMISAGYH-------  273 (685)
Q Consensus       207 ~~~~s~---~g~~l~~g~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~~~l~s~s~d-------  273 (685)
                      .+++..   ||+++++.. .+++|.+.|+.+.+.......       .....+.++...  |...+++.++.+       
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~i-------Pn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pnd  161 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEI-------PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVND  161 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEEC-------SSCCSEEEEEECCSSBCSEEEEEECSCEESSCS
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEec-------CCCCCCceeecccCCCeEEEEccCccccccCCC
Confidence            555554   899998876 578999999999887553321       344556666654  444567666542       


Q ss_pred             -----------CeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCC---------------eEEEEE------
Q 005656          274 -----------GDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDL---------------VIRLFD------  321 (685)
Q Consensus       274 -----------g~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---------------~I~i~d------  321 (685)
                                 +.+.++|..+.+...++........+.++++|+++++.+.+.               .+.+++      
T Consensus       162 g~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~  241 (459)
T d1fwxa2         162 GTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK  241 (459)
T ss_dssp             SSSTTCGG-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH
T ss_pred             CccccchhhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHH
Confidence                       236789999999998888888888999999999988876431               233333      


Q ss_pred             -----------------cCCC---eeEEEEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCC------------c
Q 005656          322 -----------------VVAL---RMVRKFEGHTDRITDFCFSEDGKWLLSSG-MDGSLRIWDVILA------------R  368 (685)
Q Consensus       322 -----------------~~~~---~~~~~~~~h~~~I~~l~~spdg~~l~s~s-~Dg~I~iwd~~~~------------~  368 (685)
                                       ....   ..++.+... .....+.++|||+++++++ .+.++.|+|+..-            .
T Consensus       242 av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVp-KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~  320 (459)
T d1fwxa2         242 AIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSA  320 (459)
T ss_dssp             HHHHTCSEEETTEEEEECSGG--CSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGG
T ss_pred             hhhcCCcEEeCCceeecccccCCcceeEEEecC-CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCcccc
Confidence                             3221   122222211 2245789999999988776 7889999998631            1


Q ss_pred             eeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656          369 QIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRC  408 (685)
Q Consensus       369 ~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~  408 (685)
                      ........-.....+|+..|..-.+--.|+ .|--|+...
T Consensus       321 ~~~e~elglgPLht~fd~~g~aytslfids-~v~kw~~~~  359 (459)
T d1fwxa2         321 VVAEPELGLGPLHTAFDGRGNAYTSLFLDS-QVVKWNIED  359 (459)
T ss_dssp             EEECCBCCSCEEEEEECTTSEEEEEETTTT-EEEEEEHHH
T ss_pred             EEeecccCcCccccccCCCceEEEEeeccc-eEEEEecch
Confidence            122223344477889998885444445676 999998643

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.24  E-value=5.1e-05  Score=71.63  Aligned_cols=196  Identities=9%  Similarity=0.001  Sum_probs=104.8

Q ss_pred             CCCCeEEEEEccCCCEEEEEec-C-----CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC-
Q 005656          201 NPTAVKACTISACGNFAVLGTA-G-----GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH-  273 (685)
Q Consensus       201 ~~~~v~~~~~s~~g~~l~~g~~-d-----g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d-  273 (685)
                      ........+|||||+.|+.... +     +.|++++..++..........  .............|+|+|+.++..... 
T Consensus        39 ~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~--~~~~~~~~~~~~~~spdg~~l~~~~~~~  116 (281)
T d1k32a2          39 NLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSG--KSTGRRMFTDVAGFDPDGNLIISTDAMQ  116 (281)
T ss_dssp             SSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCE--EEETTEECSEEEEECTTCCEEEEECTTS
T ss_pred             CCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCC--CccCccccccccccCCCCCEEEEEEccC
Confidence            3456788899999999986543 2     248888888887654321100  001223456788999999988876432 


Q ss_pred             -----CeEEEEECCCCceEEEeecCCceeEEEEeecCC-EEEEEeCCC-----------eEEEEEcCCCeeEEEEecCCC
Q 005656          274 -----GDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG-LLATVADDL-----------VIRLFDVVALRMVRKFEGHTD  336 (685)
Q Consensus       274 -----g~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg-----------~I~i~d~~~~~~~~~~~~h~~  336 (685)
                           ..+...+...+.....  ....... .+.+++. .++....+.           ............... ..+..
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  192 (281)
T d1k32a2         117 PFSSMTCLYRVENDGINFVPL--NLGPATH-ILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKI-VDMST  192 (281)
T ss_dssp             SSTTCCEEEEEEGGGTEEEEC--CSCSCSE-EEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEE-ECCSS
T ss_pred             CCccceeeeeecCCCceeEEe--cCCccce-eeecCCCeEEEeeccccceeeeeccCCcceeeeeccccceeec-cCCcc
Confidence                 2345555554443322  1222223 3344444 333332211           122222233333332 23344


Q ss_pred             CeEEEEEcCCCCEEEEEeCC--CcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656          337 RITDFCFSEDGKWLLSSGMD--GSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN  406 (685)
Q Consensus       337 ~I~~l~~spdg~~l~s~s~D--g~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~  406 (685)
                      ......++++. .+.....+  ..|.++|+.++.... +..........|||||+.|+... ++ .|++++.
T Consensus       193 ~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~-lt~~~~~~~~~~SpDG~~I~f~~-~~-~l~~~d~  260 (281)
T d1k32a2         193 HVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKDLRK-HTSFTDYYPRHLNTDGRRILFSK-GG-SIYIFNP  260 (281)
T ss_dssp             CCEEEEEETTE-EEEEECTTSSCEEEEEETTSCSCEE-CCCCCSSCEEEEEESSSCEEEEE-TT-EEEEECT
T ss_pred             ccceeeeeccc-cceecccccccceEEEeCCCCceEE-eecCCCcccccCcCCCCEEEEEe-CC-EEEEEEC
Confidence            45556666653 23333333  357778887766543 33223333346899999988754 44 7877763

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.16  E-value=0.00043  Score=72.66  Aligned_cols=82  Identities=9%  Similarity=0.001  Sum_probs=56.9

Q ss_pred             CeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccc--eEEEEEcCCCC-eE
Q 005656          315 LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS--ITALSLSPNMD-VL  391 (685)
Q Consensus       315 g~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~--v~~v~~spdg~-~L  391 (685)
                      |.|.-||+.+++.+-... +..++..-.++..|.+++.|+.||.++.+|..+|+.+-.+.....  -.-+.|..+|+ |+
T Consensus       453 G~l~A~D~~TG~~~W~~~-~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYv  531 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYV  531 (596)
T ss_dssp             EEEEEECTTTCCEEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             ceEEEEeCCCCceecccC-CCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEE
Confidence            467888888888776654 222222222334577888899999999999999999999987655  23355666886 66


Q ss_pred             EEEEeC
Q 005656          392 ATAHVD  397 (685)
Q Consensus       392 at~~~d  397 (685)
                      ++...-
T Consensus       532 av~~G~  537 (596)
T d1w6sa_         532 AIYYGV  537 (596)
T ss_dssp             EEEECC
T ss_pred             EEEecC
Confidence            665543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=0.0037  Score=57.96  Aligned_cols=238  Identities=11%  Similarity=-0.005  Sum_probs=140.9

Q ss_pred             CcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEe-cCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecC
Q 005656           25 GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA-SADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN  103 (685)
Q Consensus        25 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~-s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~  103 (685)
                      ..|+-.++.+......+.  ....+.+++|.+..+.|.-+ ..++.|.-.+++..................+..+++.+-
T Consensus        10 ~~I~~~~l~~~~~~~~~~--~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~   87 (266)
T d1ijqa1          10 HEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI   87 (266)
T ss_dssp             SSEEEEETTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred             CeEEEEECCCCcceeeeC--CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeec
Confidence            459989998766554443  45577899999887766655 455667666665432221222222333456778999876


Q ss_pred             CCEEEEEe-CCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEE
Q 005656          104 GRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYV  182 (685)
Q Consensus       104 ~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (685)
                      ++.|..+. ..+.|.+.++..........                                                   
T Consensus        88 ~~~lY~~d~~~~~I~v~~~~g~~~~~~~~---------------------------------------------------  116 (266)
T d1ijqa1          88 HSNIYWTDSVLGTVSVADTKGVKRKTLFR---------------------------------------------------  116 (266)
T ss_dssp             TTEEEEEETTTTEEEEEETTSSSEEEEEE---------------------------------------------------
T ss_pred             cceEEEEecCCCEEEeEecCCceEEEEEc---------------------------------------------------
Confidence            66666553 45678887765443222111                                                   


Q ss_pred             EEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe--cCCcEEEEECCCCccccccccccccccCCCCcCEEEEEE
Q 005656          183 WRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT--AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC  260 (685)
Q Consensus       183 w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~--~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  260 (685)
                                       ........+++.|...+++...  ..+.|...++..........        ..-....++++
T Consensus       117 -----------------~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~--------~~~~~p~gl~i  171 (266)
T d1ijqa1         117 -----------------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT--------ENIQWPNGITL  171 (266)
T ss_dssp             -----------------CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC--------SSCSCEEEEEE
T ss_pred             -----------------CCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccc--------cccceeeEEEe
Confidence                             2234567888988776666554  34568777776543322221        22355789999


Q ss_pred             cCCCCEEEEE-ECCCeEEEEECCCCceEEEeecC---CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCC
Q 005656          261 DSTNTLMISA-GYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTD  336 (685)
Q Consensus       261 ~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~  336 (685)
                      ++.++.|+.+ ...+.|...++............   .....+++. ++.++.+-..++.|...+..+++....+.....
T Consensus       172 D~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~~~~~~~~~~~  250 (266)
T d1ijqa1         172 DLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAENLL  250 (266)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEECSCS
T ss_pred             eccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCCCcceEEEEcCCC
Confidence            9988777666 45688999998765443333222   234556665 233444445678888888888776666655444


Q ss_pred             CeEEE
Q 005656          337 RITDF  341 (685)
Q Consensus       337 ~I~~l  341 (685)
                      .+.++
T Consensus       251 ~p~~i  255 (266)
T d1ijqa1         251 SPEDM  255 (266)
T ss_dssp             CCCCE
T ss_pred             CceEE
Confidence            44443

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.06  E-value=0.0045  Score=57.20  Aligned_cols=240  Identities=13%  Similarity=0.040  Sum_probs=144.5

Q ss_pred             CcEEEEeCCCCeee-----EEeecccccCeeEEEEeCCCcEEEEe-cCCCcEEEEEecCCCCCCceeEecccCCCCCeEE
Q 005656           25 GVISIWNLEKRRLQ-----SVIREAHDNAIISLHFFANEPVLMSA-SADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI   98 (685)
Q Consensus        25 g~I~vwd~~~~~~~-----~~~~~~h~~~V~~l~~sp~~~~l~s~-s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i   98 (685)
                      +.|+-.+++.....     ..+. .+...+.+++|.+..+.|.-+ ..++.|+..+++...    ...........+.++
T Consensus        10 ~~I~~~~ld~~~~~~~~~~~~~~-~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~----~~~v~~~~~~~p~~i   84 (263)
T d1npea_          10 GKIERLPLERNTMKKTEAKAFLH-IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE----PTTIIRQDLGSPEGI   84 (263)
T ss_dssp             EEEEEEEESSSCBCGGGCEEEEE-EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC----CEEEECTTCCCEEEE
T ss_pred             CeEEEEECCCccccccccccccc-cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCC----cEEEEEeccccccEE
Confidence            57777777654321     2222 445568889999877766554 456778777776542    122222233567889


Q ss_pred             EEecCCCEEEEE-eCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCC
Q 005656           99 RFYANGRHILSA-GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDT  177 (685)
Q Consensus        99 ~~~~~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (685)
                      ++..-+..|..+ ...+.|.+.++........+.                                              
T Consensus        85 AvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~----------------------------------------------  118 (263)
T d1npea_          85 ALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFD----------------------------------------------  118 (263)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC----------------------------------------------
T ss_pred             EEeccCCeEEEeccCCCEEEEEecCCceEEEEec----------------------------------------------
Confidence            998766666544 445677777765332211110                                              


Q ss_pred             ceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecC---CcEEEEECCCCccccccccccccccCCCCcC
Q 005656          178 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG---GWIERFNLQSGISRGSYLDMSERSNYAHNGE  254 (685)
Q Consensus       178 ~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d---g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~  254 (685)
                                            .....+..+++.|...+++....+   +.|...++..........        ..-..
T Consensus       119 ----------------------~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~--------~~~~~  168 (263)
T d1npea_         119 ----------------------TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQ--------DNLGL  168 (263)
T ss_dssp             ----------------------SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEEC--------TTCSC
T ss_pred             ----------------------ccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeee--------ecccc
Confidence                                  123457788999888877765433   346666665433222111        22346


Q ss_pred             EEEEEEcCCCCEEEEEE-CCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEe-
Q 005656          255 VVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE-  332 (685)
Q Consensus       255 v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~-  332 (685)
                      ..++++++.++.|+.+. ..+.|...++........+........+++. ++.+..+-...+.|...|..+++.+..+. 
T Consensus       169 P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~  247 (263)
T d1npea_         169 PNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHP  247 (263)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECC
T ss_pred             cceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEECC
Confidence            68999998888776654 5688999999866544444433334567765 33344444567899999999998877664 


Q ss_pred             cCCCCeEEEEEcCC
Q 005656          333 GHTDRITDFCFSED  346 (685)
Q Consensus       333 ~h~~~I~~l~~spd  346 (685)
                      .......++++.++
T Consensus       248 ~~~~~~~gi~v~~~  261 (263)
T d1npea_         248 HKQTRLYGITIALS  261 (263)
T ss_dssp             SSCCCCCCEEEECS
T ss_pred             CCCCCcceEEEeCC
Confidence            33345556666543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=98.01  E-value=0.0023  Score=66.77  Aligned_cols=132  Identities=14%  Similarity=0.097  Sum_probs=89.6

Q ss_pred             CEEEEEECCCeEEEEECCCCceEEEeecC------------------------------------CceeEEEEeecCCEE
Q 005656          265 TLMISAGYHGDIKVWDFKGRDLKSRWEVG------------------------------------CSLVKIVYHRVNGLL  308 (685)
Q Consensus       265 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------------------------------------~~i~~~~~~~~~~~l  308 (685)
                      ..++.++.+|.+.++|..+++.+......                                    ..-..++++|+..++
T Consensus       328 ~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~  407 (573)
T d1kb0a2         328 KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLV  407 (573)
T ss_dssp             EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEE
T ss_pred             eeeeeccccceeEEeccccccccccccccccccccccccccceeeeeeccccccceEEeecccCCccccccccCCCcceE
Confidence            35677788999999999999887544321                                    001124677777766


Q ss_pred             EEEeCC-------------------------------------------CeEEEEEcCCCeeEEEEecCCCCeEEEEEcC
Q 005656          309 ATVADD-------------------------------------------LVIRLFDVVALRMVRKFEGHTDRITDFCFSE  345 (685)
Q Consensus       309 ~~~~~d-------------------------------------------g~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp  345 (685)
                      ++...+                                           |.+.-||+.+++.+-+.+... +...=..+-
T Consensus       408 yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~-p~~gg~lst  486 (573)
T d1kb0a2         408 YLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS-PWNGGTLTT  486 (573)
T ss_dssp             EEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEE
T ss_pred             EeeccccceeeecccccccccCCCCccccccccccccccccCCCCCCCcccEEEeCCCCCceEeeecCCC-CCCCceEEE
Confidence            653222                                           357788999998887776332 222112333


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeeEEeeccceEE--EEEcCCCC-eEEEEEeC
Q 005656          346 DGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITA--LSLSPNMD-VLATAHVD  397 (685)
Q Consensus       346 dg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~--v~~spdg~-~Lat~~~d  397 (685)
                      .|.+|++|+.||.++.+|..+|+.+-.+.....+.+  +.|..+|+ |+++.+.-
T Consensus       487 agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~v~~G~  541 (573)
T d1kb0a2         487 AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGW  541 (573)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECC
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEeCC
Confidence            678898999999999999999999999987665332  55666886 55555543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.99  E-value=0.0021  Score=66.90  Aligned_cols=132  Identities=13%  Similarity=0.098  Sum_probs=90.8

Q ss_pred             EEEEEECCCeEEEEECCCCceEEEeecCC-------------------------------------ceeEEEEeecCCEE
Q 005656          266 LMISAGYHGDIKVWDFKGRDLKSRWEVGC-------------------------------------SLVKIVYHRVNGLL  308 (685)
Q Consensus       266 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-------------------------------------~i~~~~~~~~~~~l  308 (685)
                      .++.++.+|.+.++|..+++++.......                                     .-...+++|+..++
T Consensus       316 ~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~  395 (560)
T d1kv9a2         316 VLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLV  395 (560)
T ss_dssp             EEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEE
T ss_pred             eeeecCccceEEEEecCCCcccccccccccccccccChhhccccccccccccccceeeeeccccccccccccccCCCCee
Confidence            56677889999999999998875443210                                     01135677777766


Q ss_pred             EEEeC------------------------------------CCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEE
Q 005656          309 ATVAD------------------------------------DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLS  352 (685)
Q Consensus       309 ~~~~~------------------------------------dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s  352 (685)
                      ++...                                    .|.+.-||+.+++.+-+.... .+...-.++-.|.++++
T Consensus       396 yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~-~~~~gg~l~TagglVF~  474 (560)
T d1kv9a2         396 YIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQ  474 (560)
T ss_dssp             EEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEE
T ss_pred             ecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCC-CCCCCceeEECCCEEEE
Confidence            65442                                    256888999999988776522 22222223335678889


Q ss_pred             EeCCCcEEEEEcCCCceeeEEeeccceE--EEEEcCCCC-eEEEEEeCC
Q 005656          353 SGMDGSLRIWDVILARQIDAIHVDVSIT--ALSLSPNMD-VLATAHVDQ  398 (685)
Q Consensus       353 ~s~Dg~I~iwd~~~~~~i~~~~~~~~v~--~v~~spdg~-~Lat~~~d~  398 (685)
                      |+.||.++.+|..+|+.+-.+.....+.  -+.+..+|+ |+++....+
T Consensus       475 G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~v~aG~g  523 (560)
T d1kv9a2         475 GTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMAGWG  523 (560)
T ss_dssp             ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCC
T ss_pred             ECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEeCCC
Confidence            9999999999999999999998766533  356667885 666665444

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.98  E-value=0.0018  Score=63.84  Aligned_cols=280  Identities=11%  Similarity=-0.015  Sum_probs=146.4

Q ss_pred             eeEEEEeCCCcEEEEecCCC-----------cEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCC-Cce
Q 005656           49 IISLHFFANEPVLMSASADN-----------SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD-RAF  116 (685)
Q Consensus        49 V~~l~~sp~~~~l~s~s~D~-----------~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-g~i  116 (685)
                      +.......+|++++.|+.+.           .+.+||..++.-..... ....|........+.++|+.++.|+.+ ..+
T Consensus        22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~-~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~  100 (387)
T d1k3ia3          22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV-TVTKHDMFCPGISMDGNGQIVVTGGNDAKKT  100 (387)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE-EECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred             cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCC-CCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence            33444455788887776421           26688877664322211 122344444567888999988888765 578


Q ss_pred             EEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeec
Q 005656          117 RLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR  196 (685)
Q Consensus       117 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  196 (685)
                      .+||..+..-...-                                                                  
T Consensus       101 ~~yd~~~~~w~~~~------------------------------------------------------------------  114 (387)
T d1k3ia3         101 SLYDSSSDSWIPGP------------------------------------------------------------------  114 (387)
T ss_dssp             EEEEGGGTEEEECC------------------------------------------------------------------
T ss_pred             eEecCccCcccccc------------------------------------------------------------------
Confidence            89987665422110                                                                  


Q ss_pred             CCCCCCCCeEEEEEccCCCEEEEEecC------CcEEEEECCCCccccccccccc-cccCCCC-----cCEEEEEEcCCC
Q 005656          197 PCPENPTAVKACTISACGNFAVLGTAG------GWIERFNLQSGISRGSYLDMSE-RSNYAHN-----GEVVGVACDSTN  264 (685)
Q Consensus       197 ~~~~~~~~v~~~~~s~~g~~l~~g~~d------g~i~~~d~~~~~~~~~~~~~~~-~~~~~h~-----~~v~~l~~~~~~  264 (685)
                      . ......-.+++..++|+.+++|+..      ..+.+||+.+......-..... .....+.     ..-..+...++|
T Consensus       115 ~-~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  193 (387)
T d1k3ia3         115 D-MQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKG  193 (387)
T ss_dssp             C-CSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGG
T ss_pred             c-ccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCC
Confidence            0 0112223466778899999988753      3689999988754321100000 0000111     011112333567


Q ss_pred             CEEEEEECCCeEEEEECCCCceEEEeec--C-------CceeEEEEe-ecCCEEEEEeCCC--------eEEEEEcCCC-
Q 005656          265 TLMISAGYHGDIKVWDFKGRDLKSRWEV--G-------CSLVKIVYH-RVNGLLATVADDL--------VIRLFDVVAL-  325 (685)
Q Consensus       265 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~-------~~i~~~~~~-~~~~~l~~~~~dg--------~I~i~d~~~~-  325 (685)
                      +.++.++.++.+.+++..+.........  .       ..-.++.+. .++++++.|+...        ...++++... 
T Consensus       194 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~  273 (387)
T d1k3ia3         194 SVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPG  273 (387)
T ss_dssp             CEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTT
T ss_pred             CEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccc
Confidence            7777777777788888776654322111  1       111222222 3456666665321        2333333221 


Q ss_pred             --eeEEEEe---cCCCCeEEEEEcCCCCEEEEEeCC-----------CcEEEEEcCCCceeeEEeeccc---eEEEEEcC
Q 005656          326 --RMVRKFE---GHTDRITDFCFSEDGKWLLSSGMD-----------GSLRIWDVILARQIDAIHVDVS---ITALSLSP  386 (685)
Q Consensus       326 --~~~~~~~---~h~~~I~~l~~spdg~~l~s~s~D-----------g~I~iwd~~~~~~i~~~~~~~~---v~~v~~sp  386 (685)
                        .......   .+...-.+....+||++++.|+.+           .++.+||..+.+-...-....+   -....+.+
T Consensus       274 ~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~  353 (387)
T d1k3ia3         274 TSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLP  353 (387)
T ss_dssp             SCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECT
T ss_pred             cCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCCCCcccceEEEEECC
Confidence              1111111   011122355667899999988853           1478899876643221111111   12344679


Q ss_pred             CCCeEEEEEe
Q 005656          387 NMDVLATAHV  396 (685)
Q Consensus       387 dg~~Lat~~~  396 (685)
                      ||+.++.|+.
T Consensus       354 dG~v~v~GG~  363 (387)
T d1k3ia3         354 DGRVFNGGGG  363 (387)
T ss_dssp             TSCEEEEECC
T ss_pred             CCEEEEEeCC
Confidence            9999999884

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.97  E-value=0.0018  Score=63.90  Aligned_cols=116  Identities=13%  Similarity=0.112  Sum_probs=73.1

Q ss_pred             EEEEEccCCCCEEEEEeCC-----C------cEEEEeCCCCeee--EEeecccccCeeEEEEeCCCcEEEEecCC-CcEE
Q 005656            6 TALAFSSDGQPLLASGASS-----G------VISIWNLEKRRLQ--SVIREAHDNAIISLHFFANEPVLMSASAD-NSIK   71 (685)
Q Consensus         6 ~~l~fspdg~~~latg~~d-----g------~I~vwd~~~~~~~--~~~~~~h~~~V~~l~~sp~~~~l~s~s~D-~~v~   71 (685)
                      .......+|+ +++.|+.+     +      .+.+||..+++-.  ......|.....+.++.+++++++.|+.+ .++.
T Consensus        23 ~~a~~~~~gk-v~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~  101 (387)
T d1k3ia3          23 AAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS  101 (387)
T ss_dssp             EEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred             EEEEEeeCCE-EEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCccee
Confidence            3444556788 77777742     1      3779999887543  22332444445567889999999998765 5899


Q ss_pred             EEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCC------CceEEEEeecCc
Q 005656           72 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD------RAFRLFSVIQDQ  125 (685)
Q Consensus        72 iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d------g~i~vwd~~~~~  125 (685)
                      +||..+...  ....... ....-.+.+..+||+.++.++.+      ..+.+||..+.+
T Consensus       102 ~yd~~~~~w--~~~~~~~-~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3         102 LYDSSSDSW--IPGPDMQ-VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             EEEGGGTEE--EECCCCS-SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             EecCccCcc--ccccccc-ccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence            998876521  1111111 11223456777899988888753      357788876654

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.82  E-value=0.013  Score=60.91  Aligned_cols=81  Identities=14%  Similarity=0.210  Sum_probs=59.8

Q ss_pred             CeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccce--EEEEEcCCCC-eE
Q 005656          315 LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSI--TALSLSPNMD-VL  391 (685)
Q Consensus       315 g~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v--~~v~~spdg~-~L  391 (685)
                      |.|.-+|+.+++.+-+...+. ++..-..+..|.++++|+.||.++.+|..+|+.+-.++....+  .-+.|..+|+ |+
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv  544 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            578888999998888776442 2222223446778889999999999999999999999876653  2367778885 66


Q ss_pred             EEEEe
Q 005656          392 ATAHV  396 (685)
Q Consensus       392 at~~~  396 (685)
                      ++...
T Consensus       545 ~i~ag  549 (582)
T d1flga_         545 GVTVG  549 (582)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            66553

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.82  E-value=0.012  Score=54.13  Aligned_cols=161  Identities=12%  Similarity=0.088  Sum_probs=104.3

Q ss_pred             CCeEEEEEccCCCEEEEE-ecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC-C--eEEE
Q 005656          203 TAVKACTISACGNFAVLG-TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH-G--DIKV  278 (685)
Q Consensus       203 ~~v~~~~~s~~g~~l~~g-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d-g--~i~i  278 (685)
                      ..+..+++..-++.++.. ...+.|.+.++..........        .......+++++|.+.+++..... +  .|.-
T Consensus        79 ~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~--------~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r  150 (263)
T d1npea_          79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFD--------TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIET  150 (263)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------SSCSSEEEEEEETTTTEEEEEECCSSSCEEEE
T ss_pred             ccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEec--------ccccCCcEEEEecccCcEEEeecCCCCcEEEE
Confidence            457788888766666544 556789999987654332221        223568899999988777655432 2  3544


Q ss_pred             EECCCCceEEEeecC-CceeEEEEeecCCEEEEE-eCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE-eC
Q 005656          279 WDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATV-ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS-GM  355 (685)
Q Consensus       279 wd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~-~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~-s~  355 (685)
                      -++............ .....+++.+.++.|+.+ ...+.|...|+........+.+-. ...++++.  +.+|... ..
T Consensus       151 ~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~-~P~~lav~--~~~lYwtd~~  227 (263)
T d1npea_         151 SHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ-YPFAVTSY--GKNLYYTDWK  227 (263)
T ss_dssp             EETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC-SEEEEEEE--TTEEEEEETT
T ss_pred             ecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCC-CcEEEEEE--CCEEEEEECC
Confidence            556544333333222 566789999888877655 457899999997665444445433 35678874  4556544 46


Q ss_pred             CCcEEEEEcCCCceeeEEe
Q 005656          356 DGSLRIWDVILARQIDAIH  374 (685)
Q Consensus       356 Dg~I~iwd~~~~~~i~~~~  374 (685)
                      .+.|...|..+++.+..+.
T Consensus       228 ~~~I~~~~~~~g~~~~~~~  246 (263)
T d1npea_         228 TNSVIAMDLAISKEMDTFH  246 (263)
T ss_dssp             TTEEEEEETTTTEEEEEEC
T ss_pred             CCEEEEEECCCCccceEEC
Confidence            6889999998888777664

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.78  E-value=0.0078  Score=60.20  Aligned_cols=115  Identities=14%  Similarity=0.139  Sum_probs=67.2

Q ss_pred             EEEEEEccCCCCEEEEEeCCC----cEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCC-------------
Q 005656            5 VTALAFSSDGQPLLASGASSG----VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD-------------   67 (685)
Q Consensus         5 V~~l~fspdg~~~latg~~dg----~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D-------------   67 (685)
                      +...++||||+.++++-+.+|    .|+++|+.+++.+....  .......++|++|+..|+....|             
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i--~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~  204 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL--ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST  204 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE--EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc--ccccccceEEcCCCCEEEEEEeccccCccccccccc
Confidence            345688999994443433333    69999999998765332  12223678999999977654322             


Q ss_pred             ---CcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeC---CCceEEEEe
Q 005656           68 ---NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ---DRAFRLFSV  121 (685)
Q Consensus        68 ---~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~---dg~i~vwd~  121 (685)
                         ..|..|.+.+......++.........+..+..++++++++....   ++...+|-+
T Consensus       205 ~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~  264 (430)
T d1qfma1         205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYC  264 (430)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEE
T ss_pred             CCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEe
Confidence               246666555543222333322222334556677888888775432   334455544

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.78  E-value=0.0078  Score=62.45  Aligned_cols=81  Identities=16%  Similarity=0.077  Sum_probs=57.4

Q ss_pred             CeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCC-CeEEEEEcCCCC-EEE
Q 005656          274 GDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTD-RITDFCFSEDGK-WLL  351 (685)
Q Consensus       274 g~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~-~I~~l~~spdg~-~l~  351 (685)
                      |.|.-+|+.+++.+.+.....+..+-...-.+.++++|+.|+.++.+|.++|+.+-++.-... .-.-+.|..||+ |++
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~  523 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG  523 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEEE
Confidence            468888999999888877664444333444577888999999999999999999988863221 112255666886 565


Q ss_pred             EEe
Q 005656          352 SSG  354 (685)
Q Consensus       352 s~s  354 (685)
                      +..
T Consensus       524 v~~  526 (571)
T d2ad6a1         524 SMY  526 (571)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            443

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.56  E-value=0.025  Score=58.83  Aligned_cols=81  Identities=14%  Similarity=0.049  Sum_probs=58.2

Q ss_pred             CeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCC-eEEEEEcCCCC-EEE
Q 005656          274 GDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDR-ITDFCFSEDGK-WLL  351 (685)
Q Consensus       274 g~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~-I~~l~~spdg~-~l~  351 (685)
                      |.|.-||..+++.+.......+...-.++-.+.++++|+.||.++.+|..+|+.+-++.-..+. -.=+.|..||+ |++
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYva  532 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVA  532 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             ceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEEE
Confidence            5788899999998887776655544445556888889999999999999999999988732211 11234556886 565


Q ss_pred             EEe
Q 005656          352 SSG  354 (685)
Q Consensus       352 s~s  354 (685)
                      ..+
T Consensus       533 v~~  535 (596)
T d1w6sa_         533 IYY  535 (596)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            443

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.41  E-value=0.082  Score=54.31  Aligned_cols=82  Identities=10%  Similarity=0.099  Sum_probs=60.7

Q ss_pred             CeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCC-eEEEEEcCCCC-EEE
Q 005656          274 GDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDR-ITDFCFSEDGK-WLL  351 (685)
Q Consensus       274 g~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~-I~~l~~spdg~-~l~  351 (685)
                      |.+.-||+.+++.+.......+...-.+.-.+.++++|+.||.++.||..+|+.+-++.-..+. -.-+.+..||+ ||+
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~  517 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVA  517 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEE
Confidence            5688899999999998887766555455566888999999999999999999999888742221 11245566886 665


Q ss_pred             EEeC
Q 005656          352 SSGM  355 (685)
Q Consensus       352 s~s~  355 (685)
                      ..+.
T Consensus       518 v~aG  521 (560)
T d1kv9a2         518 IMAG  521 (560)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            5443

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.30  E-value=0.059  Score=48.99  Aligned_cols=238  Identities=15%  Similarity=0.219  Sum_probs=134.7

Q ss_pred             EEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEec
Q 005656            9 AFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFR   88 (685)
Q Consensus         9 ~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~   88 (685)
                      -.+|..+ +||.-+ ...+.|+|+++.+.++...  ...+|.--.|-.+.. |+-.+ +..|.-|+++... .+  .+.+
T Consensus        69 IMhP~~~-IiALra-g~~LQiFnletK~klks~~--~~e~VvfWkWis~~~-L~lVT-~taVYHW~~~g~s-~P--~k~f  139 (327)
T d1utca2          69 IMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISLNT-VALVT-DNAVYHWSMEGES-QP--VKMF  139 (327)
T ss_dssp             EECSSSS-EEEEEE-TTEEEEEETTTTEEEEEEE--CSSCCCEEEESSSSE-EEEEC-SSEEEEEESSSSC-CC--EEEE
T ss_pred             hcCCCCc-EEEEec-CCeEEEEehhHhhhhceEE--cCCCcEEEEecCCCE-EEEEc-CCceEEEcccCCC-Cc--hhhh
Confidence            3567776 777665 5689999999999888876  566788888876654 43332 4579999996543 23  3333


Q ss_pred             ccCC----CCCeEEEEecCCCEEEEEe---C----CCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeee
Q 005656           89 SGHS----APPLCIRFYANGRHILSAG---Q----DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF  157 (685)
Q Consensus        89 ~~h~----~~v~~i~~~~~~~~l~s~s---~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (685)
                      ..|.    ..|..-..+++.++++..|   .    .|.+.+|+.+..... .+.. +                   ..+|
T Consensus       140 dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ-~ieG-h-------------------aa~F  198 (327)
T d1utca2         140 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ-PIEG-H-------------------AASF  198 (327)
T ss_dssp             ECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEE-EECC-S-------------------EEEE
T ss_pred             hhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCc-cccc-e-------------------eeee
Confidence            3332    3455556677788877543   2    255666666543211 1100 0                   0000


Q ss_pred             ecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcc-
Q 005656          158 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS-  236 (685)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~-  236 (685)
                      ..                       +.             ..+...+..-++|...      +...+.+++.++..... 
T Consensus       199 ~~-----------------------~~-------------~~g~~~~~~lf~fa~r------~~~~~kLhIiEig~~~~g  236 (327)
T d1utca2         199 AQ-----------------------FK-------------MEGNAEESTLFCFAVR------GQAGGKLHIIEVGTPPTG  236 (327)
T ss_dssp             EE-----------------------EC-------------CTTCSSCEEEEEEEEE------ETTEEEEEEEECSCCCTT
T ss_pred             EE-----------------------EE-------------cCCCCCCceEEEEEEC------CCCCcEEEEEEcCCCccC
Confidence            00                       00             0011222222222211      23346788888866322 


Q ss_pred             cccccccccc---ccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEe
Q 005656          237 RGSYLDMSER---SNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVA  312 (685)
Q Consensus       237 ~~~~~~~~~~---~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~  312 (685)
                      ...+......   ....-.+-..++.+++....+...+.-|.+.+||+.++.++..-+.. .+|-..+-+.+..=+++..
T Consensus       237 ~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VN  316 (327)
T d1utca2         237 NQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVN  316 (327)
T ss_dssp             CCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEE
T ss_pred             CCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEEC
Confidence            2222111111   11133456678889988888999999999999999999988876654 4444444444433344444


Q ss_pred             CCCeEE
Q 005656          313 DDLVIR  318 (685)
Q Consensus       313 ~dg~I~  318 (685)
                      .+|.|.
T Consensus       317 r~GqVl  322 (327)
T d1utca2         317 RKGQVL  322 (327)
T ss_dssp             TTSEEE
T ss_pred             CCCeEE
Confidence            566554

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.085  Score=48.25  Aligned_cols=198  Identities=14%  Similarity=0.028  Sum_probs=121.3

Q ss_pred             CCCeEEEEEccCCCEEEEEe-cCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE-CCCeEEEE
Q 005656          202 PTAVKACTISACGNFAVLGT-AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVW  279 (685)
Q Consensus       202 ~~~v~~~~~s~~g~~l~~g~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iw  279 (685)
                      ...+.+++|.+.++.++... ..+.|...++...........    ........+.++++++.+..|..+. ..+.|.+.
T Consensus        29 ~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~----~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~  104 (266)
T d1ijqa1          29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT----VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA  104 (266)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE----EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEE----EEeCCCCCcceEEEeeccceEEEEecCCCEEEeE
Confidence            34577888988888777664 456677777653221111000    0012234567899988776666554 56789999


Q ss_pred             ECCCCceEEEeecC-CceeEEEEeecCCEEEEEe--CCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE-eC
Q 005656          280 DFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVA--DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS-GM  355 (685)
Q Consensus       280 d~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~--~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~-s~  355 (685)
                      ++............ .....++++|...++....  ..+.|.-.++............-...+++++.+.++.|..+ +.
T Consensus       105 ~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~  184 (266)
T d1ijqa1         105 DTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK  184 (266)
T ss_dssp             ETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred             ecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCC
Confidence            99876655444433 5678899999777666554  34567777776544333333344668999999988777665 46


Q ss_pred             CCcEEEEEcCCCceeeEEeecc---ceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656          356 DGSLRIWDVILARQIDAIHVDV---SITALSLSPNMDVLATAHVDQNGVYLWV  405 (685)
Q Consensus       356 Dg~I~iwd~~~~~~i~~~~~~~---~v~~v~~spdg~~Lat~~~d~~~I~lW~  405 (685)
                      .+.|...++........+....   ...++++.  +.+|..+....+.|+..+
T Consensus       185 ~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~  235 (266)
T d1ijqa1         185 LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSAN  235 (266)
T ss_dssp             TTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred             cCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEE
Confidence            6789988986654443333322   25666665  456666665555666654

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.17  E-value=0.053  Score=56.16  Aligned_cols=80  Identities=18%  Similarity=0.192  Sum_probs=60.7

Q ss_pred             CeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCC-eEEEEEcCCCC-EEE
Q 005656          274 GDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDR-ITDFCFSEDGK-WLL  351 (685)
Q Consensus       274 g~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~-I~~l~~spdg~-~l~  351 (685)
                      |.|.-+|+.+++.+.....+.++..-..+..+.++++|+.||.++.||.++|+.+-+++-.... -.-+.|..||+ |++
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~  545 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLG  545 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEE
Confidence            6788899999999998887766655455667888889999999999999999999988732221 11256677885 555


Q ss_pred             EE
Q 005656          352 SS  353 (685)
Q Consensus       352 s~  353 (685)
                      ..
T Consensus       546 i~  547 (582)
T d1flga_         546 VT  547 (582)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.97  E-value=0.27  Score=50.48  Aligned_cols=141  Identities=6%  Similarity=-0.007  Sum_probs=84.1

Q ss_pred             EEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCC-cCEEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 005656          206 KACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHN-GEVVGVACDSTNTLMISAGYHGDIKVWDFKGR  284 (685)
Q Consensus       206 ~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~  284 (685)
                      ..++++|+...+++...+....+..................   +.. .......-.|..     ...-|.+.-||+.++
T Consensus       396 ~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~p~~-----~~~~G~l~AiD~~tG  467 (573)
T d1kb0a2         396 HPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQS---GTGWNTAKFFNAEPPK-----SKPFGRLLAWDPVAQ  467 (573)
T ss_dssp             SCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTG---GGTCCCCEEECSSCCC-----SCCEEEEEEEETTTT
T ss_pred             cccccCCCcceEEeeccccceeeecccccccccCCCCcccc---ccccccccccccCCCC-----CCCcccEEEeCCCCC
Confidence            35688899898988888776666655543322111100000   000 000000000100     011267889999999


Q ss_pred             ceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCe-EEEEEcCCCC-EEEEEe
Q 005656          285 DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI-TDFCFSEDGK-WLLSSG  354 (685)
Q Consensus       285 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I-~~l~~spdg~-~l~s~s  354 (685)
                      +.+.......+...-..+-.+.++++|+.||.++.||.++|+.+-++.-..+.. .=+.|..||+ |++..+
T Consensus       468 k~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~v~~  539 (573)
T d1kb0a2         468 KAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAV  539 (573)
T ss_dssp             EEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             ceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEe
Confidence            999988876555444455578899999999999999999999999887322111 1145556886 555443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.96  E-value=0.09  Score=50.00  Aligned_cols=190  Identities=16%  Similarity=0.135  Sum_probs=109.3

Q ss_pred             eEEEEEccCCCEEEEEec------------CCcEEEEECCCCccccccccccccccCCCCcCEEEEEE--cCCCC-EEEE
Q 005656          205 VKACTISACGNFAVLGTA------------GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC--DSTNT-LMIS  269 (685)
Q Consensus       205 v~~~~~s~~g~~l~~g~~------------dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~~-~l~s  269 (685)
                      .-.+++.|+|..+++++.            .|.|.++|+.+...................-...++.+  ..+++ +|++
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v  116 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  116 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence            446778888877766532            48999999987644322111000000011112334443  45565 3555


Q ss_pred             EE---CCCeEEEEECCCCc--eE--EEeecC--CceeEEEEeecCCEEEEEeC---------------CCeEEEEEcCCC
Q 005656          270 AG---YHGDIKVWDFKGRD--LK--SRWEVG--CSLVKIVYHRVNGLLATVAD---------------DLVIRLFDVVAL  325 (685)
Q Consensus       270 ~s---~dg~i~iwd~~~~~--~~--~~~~~~--~~i~~~~~~~~~~~l~~~~~---------------dg~I~i~d~~~~  325 (685)
                      ..   ...+|.+|++....  +.  .++..+  ...+.+++..++.++++-..               -+...+|..+.+
T Consensus       117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~  196 (340)
T d1v04a_         117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN  196 (340)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS
T ss_pred             EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC
Confidence            43   34678888875332  22  223222  55789999999988888421               123344444444


Q ss_pred             eeEEEEecCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCce---eeEEeeccceEEEEEcC-CCCeEEEEE
Q 005656          326 RMVRKFEGHTDRITDFCFSEDGKWLLSS-GMDGSLRIWDVILARQ---IDAIHVDVSITALSLSP-NMDVLATAH  395 (685)
Q Consensus       326 ~~~~~~~~h~~~I~~l~~spdg~~l~s~-s~Dg~I~iwd~~~~~~---i~~~~~~~~v~~v~~sp-dg~~Lat~~  395 (685)
                      +...... .-...+.|+++||+++|+.+ +..+.|++|++.....   ...+..+..+-.+.+.+ +|.+.++++
T Consensus       197 ~~~~~~~-~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~~  270 (340)
T d1v04a_         197 DVRVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCH  270 (340)
T ss_dssp             CEEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred             ceEEEcC-CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEEC
Confidence            3322223 34568999999999877655 4678899999875432   23334555688889986 455555554

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.90  E-value=0.15  Score=46.35  Aligned_cols=253  Identities=9%  Similarity=0.064  Sum_probs=149.1

Q ss_pred             CCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecC
Q 005656           24 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN  103 (685)
Q Consensus        24 dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~  103 (685)
                      ..+|.|.|+.++....+-.    -.--+.-.+|..+.||--+ ..++.++|+++.    ..++.. ....+|.--.|-.+
T Consensus        44 ~~~VvIidl~n~~~~~Rrp----i~AdsAIMhP~~~IiALra-g~~LQiFnletK----~klks~-~~~e~VvfWkWis~  113 (327)
T d1utca2          44 QAQVVIIDMNDPSNPIRRP----ISADSAIMNPASKVIALKA-GKTLQIFNIEMK----SKMKAH-TMTDDVTFWKWISL  113 (327)
T ss_dssp             EEEEEEEETTSTTSCEEEE----CCCSEEEECSSSSEEEEEE-TTEEEEEETTTT----EEEEEE-ECSSCCCEEEESSS
T ss_pred             CceEEEEECCCCCcceecc----cchhhhhcCCCCcEEEEec-CCeEEEEehhHh----hhhceE-EcCCCcEEEEecCC
Confidence            4578889987755332221    1223455679998888766 458999999887    445443 24557777788755


Q ss_pred             CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEE
Q 005656          104 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW  183 (685)
Q Consensus       104 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  183 (685)
                      . .|+..+ +..|.-|+++.......+                                                    +
T Consensus       114 ~-~L~lVT-~taVYHW~~~g~s~P~k~----------------------------------------------------f  139 (327)
T d1utca2         114 N-TVALVT-DNAVYHWSMEGESQPVKM----------------------------------------------------F  139 (327)
T ss_dssp             S-EEEEEC-SSEEEEEESSSSCCCEEE----------------------------------------------------E
T ss_pred             C-EEEEEc-CCceEEEcccCCCCchhh----------------------------------------------------h
Confidence            4 444443 456999998543221111                                                    1


Q ss_pred             EcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe-------cCCcEEEEECCCCccccccccccccccCCCCcCEE
Q 005656          184 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-------AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVV  256 (685)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-------~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~  256 (685)
                      +....           -....|.....++++++++..+       -.|.+.+|....+.....         .+|.+.-.
T Consensus       140 dR~~~-----------L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~i---------eGhaa~F~  199 (327)
T d1utca2         140 DRHSS-----------LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPI---------EGHAASFA  199 (327)
T ss_dssp             ECCGG-----------GTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEE---------CCSEEEEE
T ss_pred             hhccc-----------ccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCccc---------cceeeeeE
Confidence            11100           1134455556666666654432       236788998876644321         15655444


Q ss_pred             EEEEcCCC---CEEEEEE---CCCeEEEEECCCCc---e---EEEee----c---CCceeEEEEeecCCEEEEEeCCCeE
Q 005656          257 GVACDSTN---TLMISAG---YHGDIKVWDFKGRD---L---KSRWE----V---GCSLVKIVYHRVNGLLATVADDLVI  317 (685)
Q Consensus       257 ~l~~~~~~---~~l~s~s---~dg~i~iwd~~~~~---~---~~~~~----~---~~~i~~~~~~~~~~~l~~~~~dg~I  317 (685)
                      .+.+..+.   ..++.+.   ..+.+.+-++....   .   ....+    .   ..-..++..++.-..++.-+.-|.|
T Consensus       200 ~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i  279 (327)
T d1utca2         200 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYI  279 (327)
T ss_dssp             EECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEE
T ss_pred             EEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEE
Confidence            44443221   1222221   23678888886421   1   11111    1   1345678888888899999999999


Q ss_pred             EEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 005656          318 RLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLR  360 (685)
Q Consensus       318 ~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~  360 (685)
                      ++||+.++.++..-+-....|-..+-..+..=+++...+|.|.
T Consensus       280 ~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         280 HLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             EEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence            9999999999887776666666545444444455555666554

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.85  E-value=0.26  Score=48.49  Aligned_cols=167  Identities=12%  Similarity=0.084  Sum_probs=83.4

Q ss_pred             CCCeEEEEEccCCCEEEEEecC---Cc--EEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE---CC
Q 005656          202 PTAVKACTISACGNFAVLGTAG---GW--IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG---YH  273 (685)
Q Consensus       202 ~~~v~~~~~s~~g~~l~~g~~d---g~--i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s---~d  273 (685)
                      ...+..+..+++++++++....   +.  +.+.++.......................+.-+.. .++.+++...   .+
T Consensus       232 ~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Tn~~a~~  310 (430)
T d1qfma1         232 PKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTN-EGTVFTFKTNRHSPN  310 (430)
T ss_dssp             TTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEE-ETTEEEEEECTTCTT
T ss_pred             CceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeecccccceEEEec-CCceeecccCccccc
Confidence            3456778889999998765432   23  44455443221110000000000011222222222 2223333332   23


Q ss_pred             CeEEEEECCCCce---EEEeecC-CceeEEEEeecCCEEEEEe-CCC--eEEEEEcCCCeeEEEEecCCCCeEEEEEcCC
Q 005656          274 GDIKVWDFKGRDL---KSRWEVG-CSLVKIVYHRVNGLLATVA-DDL--VIRLFDVVALRMVRKFEGHTDRITDFCFSED  346 (685)
Q Consensus       274 g~i~iwd~~~~~~---~~~~~~~-~~i~~~~~~~~~~~l~~~~-~dg--~I~i~d~~~~~~~~~~~~h~~~I~~l~~spd  346 (685)
                      +.|...++.....   ...+..+ ..+..-.+...+.+|+... .++  .|++++..+++....+....+.|..+...++
T Consensus       311 ~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~  390 (430)
T d1qfma1         311 YRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKK  390 (430)
T ss_dssp             CEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTT
T ss_pred             ceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCCC
Confidence            5666666664322   2223222 3344444555556665554 554  6889999988776655545556666655565


Q ss_pred             CCEEE-E-Ee--CCCcEEEEEcCCCce
Q 005656          347 GKWLL-S-SG--MDGSLRIWDVILARQ  369 (685)
Q Consensus       347 g~~l~-s-~s--~Dg~I~iwd~~~~~~  369 (685)
                      ...+. + .|  .-.++.-+|+.+++.
T Consensus       391 ~~~~~~~~ss~~tP~~~y~~Dl~t~~~  417 (430)
T d1qfma1         391 DTEIFYQFTSFLSPGIIYHCDLTKEEL  417 (430)
T ss_dssp             CSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred             CCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence            55433 2 22  236789999988864

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.69  E-value=0.074  Score=50.43  Aligned_cols=121  Identities=17%  Similarity=0.277  Sum_probs=82.4

Q ss_pred             CEEEEEE--cCC-CC-EEEEEECCCeEEEEECC---CC----ceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEc
Q 005656          254 EVVGVAC--DST-NT-LMISAGYHGDIKVWDFK---GR----DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDV  322 (685)
Q Consensus       254 ~v~~l~~--~~~-~~-~l~s~s~dg~i~iwd~~---~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~  322 (685)
                      .+.++|+  ++. +. +++....+|.+..|.+.   .+    +.++.+.....+..|.+....+.|+++-.+..|+.++.
T Consensus       129 ~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~LyisEE~~Giw~~~a  208 (353)
T d1h6la_         129 EVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLYIAEEDEAIWKFSA  208 (353)
T ss_dssp             SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEES
T ss_pred             cceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEEEecCccceEEEEe
Confidence            4667776  654 44 45666778999888763   22    45667777889999999999999999999888877776


Q ss_pred             CC-----CeeEEEEec--CCCCeEEEEEcC--CCC-EEEEE-eCCCcEEEEEcCC-CceeeEEe
Q 005656          323 VA-----LRMVRKFEG--HTDRITDFCFSE--DGK-WLLSS-GMDGSLRIWDVIL-ARQIDAIH  374 (685)
Q Consensus       323 ~~-----~~~~~~~~~--h~~~I~~l~~sp--dg~-~l~s~-s~Dg~I~iwd~~~-~~~i~~~~  374 (685)
                      ..     +..+....+  ..+.+-.++.-.  ++. ||+++ -.+++..|||..+ ...+..|+
T Consensus       209 ~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~  272 (353)
T d1h6la_         209 EPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQ  272 (353)
T ss_dssp             STTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             ccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceEE
Confidence            42     233333322  356788887543  333 55544 4788999999876 35555554

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.56  E-value=0.23  Score=47.07  Aligned_cols=99  Identities=12%  Similarity=0.016  Sum_probs=59.5

Q ss_pred             CCCeEEEEEccCCCEEEEEe-----------------cCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCC
Q 005656          202 PTAVKACTISACGNFAVLGT-----------------AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN  264 (685)
Q Consensus       202 ~~~v~~~~~s~~g~~l~~g~-----------------~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  264 (685)
                      ......+++..+|.+.++-.                 ..|.+..||.  +......         ..-...++|+++|++
T Consensus       149 ~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~--~~~~~~~---------~~l~~pNGI~~s~d~  217 (340)
T d1v04a_         149 LPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVA---------EGFDFANGINISPDG  217 (340)
T ss_dssp             CSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS--SCEEEEE---------EEESSEEEEEECTTS
T ss_pred             ccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC--CceEEEc---------CCCCccceeEECCCC
Confidence            34467788888887777631                 1233444443  3222111         223467899999999


Q ss_pred             CEEEEEE-CCCeEEEEECCCCc---eEEEeecCCceeEEEEeecCCEEEEE
Q 005656          265 TLMISAG-YHGDIKVWDFKGRD---LKSRWEVGCSLVKIVYHRVNGLLATV  311 (685)
Q Consensus       265 ~~l~s~s-~dg~i~iwd~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~  311 (685)
                      ++|+.+. ..+.|+.|++....   .......+...-.+.+.+.+..+.++
T Consensus       218 ~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva  268 (340)
T d1v04a_         218 KYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVG  268 (340)
T ss_dssp             SEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEE
T ss_pred             CEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEE
Confidence            8776664 67889999987443   23334455667788887654433343

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.44  E-value=0.39  Score=45.25  Aligned_cols=206  Identities=10%  Similarity=0.193  Sum_probs=113.9

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeC----CC--cEEEEec-C-C--CcEEEEEecCCCCCC
Q 005656           13 DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA----NE--PVLMSAS-A-D--NSIKMWIFDTTDGDP   82 (685)
Q Consensus        13 dg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp----~~--~~l~s~s-~-D--~~v~iWd~~~~~~~~   82 (685)
                      +.. +++.....+-|.+||++ |+.+..+.   .+.++.+..-.    ++  .-++.++ . +  .+|.+|.++....  
T Consensus        39 ~~S-lI~gTdK~~Gl~vYdL~-G~~l~~~~---~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~--  111 (353)
T d1h6la_          39 QNS-KLITTNKKSGLAVYSLE-GKMLHSYH---TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG--  111 (353)
T ss_dssp             GGC-EEEEEETTSCCEEEETT-CCEEEECC---SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTT--
T ss_pred             Ccc-EEEEEcCcCCEEEEcCC-CcEEEecc---cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccc--
Confidence            444 66655666669999996 66666554   34555555432    22  2344444 2 2  3688888875432  


Q ss_pred             ceeEecccC-------CCCCeEEEE--ecC-CC-EEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccccccccc
Q 005656           83 RLLRFRSGH-------SAPPLCIRF--YAN-GR-HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL  151 (685)
Q Consensus        83 ~~~~~~~~h-------~~~v~~i~~--~~~-~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (685)
                       .+..+...       ...+..+|+  ++. |. +++....+|.+..|.+..........                    
T Consensus       112 -~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~--------------------  170 (353)
T d1h6la_         112 -TLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISG--------------------  170 (353)
T ss_dssp             -EEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEE--------------------
T ss_pred             -ccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceee--------------------
Confidence             22222111       124677777  443 44 56667778999888875432110000                    


Q ss_pred             CceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEEC
Q 005656          152 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL  231 (685)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~  231 (685)
                                                ..++.+                .....+..|.+......|+++-.+.-|+.++.
T Consensus       171 --------------------------~lvr~f----------------~~~~q~EGCVvDde~~~LyisEE~~Giw~~~a  208 (353)
T d1h6la_         171 --------------------------KKVRAF----------------KMNSQTEGMAADDEYGSLYIAEEDEAIWKFSA  208 (353)
T ss_dssp             --------------------------EEEEEE----------------ECSSCEEEEEEETTTTEEEEEETTTEEEEEES
T ss_pred             --------------------------Eeeecc----------------CCCCccceEEEeCCCCcEEEecCccceEEEEe
Confidence                                      001111                22456889999999999999999888888876


Q ss_pred             CCCcc-ccccccccccccCCCCcCEEEEEEcC--CCC-EEEEE-ECCCeEEEEECCCC-ceEEEe
Q 005656          232 QSGIS-RGSYLDMSERSNYAHNGEVVGVACDS--TNT-LMISA-GYHGDIKVWDFKGR-DLKSRW  290 (685)
Q Consensus       232 ~~~~~-~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~-~l~s~-s~dg~i~iwd~~~~-~~~~~~  290 (685)
                      ..... ...+...  .........+-+++.-.  ++. +|+++ -.+++..+||..+. ..+..+
T Consensus       209 ~~~~~~~~~~i~~--~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F  271 (353)
T d1h6la_         209 EPDGGSNGTVIDR--ADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADF  271 (353)
T ss_dssp             STTSCSCCEEEEE--CSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred             ccCCCccceeeec--ccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceE
Confidence            53211 1111000  00112356777777532  222 44444 46789999998753 444333

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.08  E-value=1.6  Score=39.32  Aligned_cols=105  Identities=10%  Similarity=-0.002  Sum_probs=51.7

Q ss_pred             CCEEEEEecC-----CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC-----CeEEEEECCC
Q 005656          214 GNFAVLGTAG-----GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH-----GDIKVWDFKG  283 (685)
Q Consensus       214 g~~l~~g~~d-----g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d-----g~i~iwd~~~  283 (685)
                      +...+.|+.+     ..+..||..++.....-..       .......+.... .+..++.++.+     .....+|..+
T Consensus       149 ~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~-------~~~~~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~  220 (288)
T d1zgka1         149 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAM-------NTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVET  220 (288)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCC-------SSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred             ecceEecCcccccccceEEEeecccccccccccc-------ccccccccccce-eeeEEEecCccccccccceeeeeecc
Confidence            4455555443     3578888876654322110       111111122222 34555555543     3467778776


Q ss_pred             CceEEEeecC-CceeEEEEeecCCEEEEEeCCC-----eEEEEEcCCCe
Q 005656          284 RDLKSRWEVG-CSLVKIVYHRVNGLLATVADDL-----VIRLFDVVALR  326 (685)
Q Consensus       284 ~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg-----~I~i~d~~~~~  326 (685)
                      .+....-... ......+...++++++.|+.++     .+.+||+.+.+
T Consensus       221 ~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         221 ETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             TEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             eeeecccCccCcccceEEEEECCEEEEEecCCCCeecceEEEEECCCCE
Confidence            6544432222 1121222234677777776544     47888888653

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=93.51  E-value=1.8  Score=36.48  Aligned_cols=147  Identities=12%  Similarity=0.123  Sum_probs=83.4

Q ss_pred             cCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC--CceeEEEEeecCCEEEEE----eCCCeEEEEEcCCCe
Q 005656          253 GEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATV----ADDLVIRLFDVVALR  326 (685)
Q Consensus       253 ~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~----~~dg~I~i~d~~~~~  326 (685)
                      -.|.+++.+ +.+..++|+......+|-++.|++......+  +-++.+    .+++++-.    +.-....+-|+.+|.
T Consensus       104 vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI----~~d~I~G~g~~~g~~~sfF~adl~SG~  178 (313)
T d2hu7a1         104 MRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDI----RGDLIAGLGFFGGGRVSLFTSNLSSGG  178 (313)
T ss_dssp             BEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEE----ETTEEEEEEEEETTEEEEEEEETTTEE
T ss_pred             EEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEec----cCCeEEEEeeecCCcceEEEEecccCC
Confidence            556777765 3456778888888889988888776544432  223322    23333211    111123333444433


Q ss_pred             eEEEEecCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCceeeEEee---------ccceEEEEEcCCCCeEEEE
Q 005656          327 MVRKFEGHTDRITDFCFSEDGKWLLSSGM---DGSLRIWDVILARQIDAIHV---------DVSITALSLSPNMDVLATA  394 (685)
Q Consensus       327 ~~~~~~~h~~~I~~l~~spdg~~l~s~s~---Dg~I~iwd~~~~~~i~~~~~---------~~~v~~v~~spdg~~Lat~  394 (685)
                       ++.|....+.++....+++.+. +++-.   ......+|+.+++.-+ +..         ...|+-+-+.|++++++.+
T Consensus       179 -lri~tpkeGS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~yer-ve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iia  255 (313)
T d2hu7a1         179 -LRVFDSGEGSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSVED-LELPSKDFSSYRPTAITWLGYLPDGRLAVVA  255 (313)
T ss_dssp             -EEEECCSSEEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCEEE-CCCSSCHHHHHCCSEEEEEEECTTSCEEEEE
T ss_pred             -EEEecCCCCcccceeEccCcee-eeccCCCCceEEEEEecccCceee-eecCcccceeecceEEEeeeeCCCCcEEEEE
Confidence             3445555566777777776665 33321   1222255777665432 221         1236667799999999999


Q ss_pred             EeCCCeEEEEEcCC
Q 005656          395 HVDQNGVYLWVNRC  408 (685)
Q Consensus       395 ~~d~~~I~lW~~~~  408 (685)
                      -.|| .=.+|.+-.
T Consensus       256 krdG-~s~lF~nGk  268 (313)
T d2hu7a1         256 RREG-RSAVFIDGE  268 (313)
T ss_dssp             EETT-EEEEEETTE
T ss_pred             ecCC-chheeecce
Confidence            9897 677776544

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.42  E-value=3.3  Score=39.06  Aligned_cols=181  Identities=9%  Similarity=-0.004  Sum_probs=103.5

Q ss_pred             CCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcc-------ccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCC
Q 005656          202 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS-------RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG  274 (685)
Q Consensus       202 ~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~-------~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg  274 (685)
                      .....-+++++...++++|+.++ +.+..+..-..       ...+..      ...-..|..++|+.+  .++.. .++
T Consensus        36 ~~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~------~~~ip~v~~vafs~d--~l~v~-~~~  105 (381)
T d1xipa_          36 FASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKW------EKEIPDVIFVCFHGD--QVLVS-TRN  105 (381)
T ss_dssp             SSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSE------EEECTTEEEEEEETT--EEEEE-ESS
T ss_pred             ccccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCccee------ccCCCCeEEEEeeCC--EEEEE-eCC
Confidence            34567788999888888888776 55665322100       000100      011125888999755  34444 456


Q ss_pred             eEEEEECCCCceEE-EeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEec-----CCCCeEEEEEcCCCC
Q 005656          275 DIKVWDFKGRDLKS-RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG-----HTDRITDFCFSEDGK  348 (685)
Q Consensus       275 ~i~iwd~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~-----h~~~I~~l~~spdg~  348 (685)
                      .+..++...-.... .-....++..+.++|  ..++....++.+.++++..++......+     -.+.+.+++|++.|.
T Consensus       106 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p--~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgk  183 (381)
T d1xipa_         106 ALYSLDLEELSEFRTVTSFEKPVFQLKNVN--NTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSF  183 (381)
T ss_dssp             EEEEEESSSTTCEEEEEECSSCEEEEEECS--SEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCE
T ss_pred             CEEEEEeeccccccccccccccccceecCC--ceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcE
Confidence            78888876543332 223346677777665  4677777889999999988754332211     235577888888887


Q ss_pred             EEEEEeCCCcEEE-EEcCCCceeeE-EeeccceEEEEEcCCCCeEEEEE
Q 005656          349 WLLSSGMDGSLRI-WDVILARQIDA-IHVDVSITALSLSPNMDVLATAH  395 (685)
Q Consensus       349 ~l~s~s~Dg~I~i-wd~~~~~~i~~-~~~~~~v~~v~~spdg~~Lat~~  395 (685)
                      .++++..++ ..+ -++.....+.. ...+..|.++.|-.+..++++-+
T Consensus       184 q~v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy~  231 (381)
T d1xipa_         184 QSFAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  231 (381)
T ss_dssp             EEEEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             EEEEeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEEC
Confidence            777764332 211 12221111100 01133488899987777666553

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.08  E-value=2  Score=42.05  Aligned_cols=103  Identities=14%  Similarity=0.172  Sum_probs=61.6

Q ss_pred             cCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec---------CCceeEEEEeec---CCEEEEEeC-------
Q 005656          253 GEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV---------GCSLVKIVYHRV---NGLLATVAD-------  313 (685)
Q Consensus       253 ~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---------~~~i~~~~~~~~---~~~l~~~~~-------  313 (685)
                      ...++|+|.|+++++++--..|.|++++..++........         ......++++|+   ..++.....       
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~~  106 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCCc
Confidence            4567999999999887765579999999887755433221         256778999985   334444321       


Q ss_pred             C----C--eEEEEEcCCC-------eeE-EEEe-cCCCCeEEEEEcCCCCEEEEEeC
Q 005656          314 D----L--VIRLFDVVAL-------RMV-RKFE-GHTDRITDFCFSEDGKWLLSSGM  355 (685)
Q Consensus       314 d----g--~I~i~d~~~~-------~~~-~~~~-~h~~~I~~l~~spdg~~l~s~s~  355 (685)
                      +    +  .+..+.....       +.+ ..+. ........|.|.|||.+.++.+.
T Consensus       107 ~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             ccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence            1    1  2333333221       111 1111 11223578999999987776663

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.67  E-value=1.7  Score=42.45  Aligned_cols=112  Identities=14%  Similarity=0.120  Sum_probs=64.8

Q ss_pred             CCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCC---CCEEEEEEC------
Q 005656          202 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST---NTLMISAGY------  272 (685)
Q Consensus       202 ~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~~~l~s~s~------  272 (685)
                      -...++++|.|+|+.+++--..|.|++++..++................-.+...+|+++|+   +.++..+..      
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~  105 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCC
Confidence            45788999999999887776689999999888765432211111111133467889999985   344443211      


Q ss_pred             -C----Ce--EEEEECCCCce--------EEEee--cCCceeEEEEeecCCEEEEEeC
Q 005656          273 -H----GD--IKVWDFKGRDL--------KSRWE--VGCSLVKIVYHRVNGLLATVAD  313 (685)
Q Consensus       273 -d----g~--i~iwd~~~~~~--------~~~~~--~~~~i~~~~~~~~~~~l~~~~~  313 (685)
                       +    ..  +..+.......        +....  ..+....+.|.|+|.++++.++
T Consensus       106 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             cccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence             1    11  33333332211        11111  1245678999999986666553

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.65  E-value=5.5  Score=37.42  Aligned_cols=136  Identities=12%  Similarity=0.070  Sum_probs=88.2

Q ss_pred             cCEEEEEEcCCCCEEEEEECCCeEEEEECCC-----------CceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEE
Q 005656          253 GEVVGVACDSTNTLMISAGYHGDIKVWDFKG-----------RDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFD  321 (685)
Q Consensus       253 ~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~-----------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d  321 (685)
                      ....-+++++...+++.|+.++ +.+..+..           ......... ..|..++|+  +..+++. .++.+..++
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~i-p~v~~vafs--~d~l~v~-~~~~l~~~~  111 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEI-PDVIFVCFH--GDQVLVS-TRNALYSLD  111 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEEC-TTEEEEEEE--TTEEEEE-ESSEEEEEE
T ss_pred             cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCC-CCeEEEEee--CCEEEEE-eCCCEEEEE
Confidence            3455788888877888888765 56665321           111111122 357888887  4455554 456788888


Q ss_pred             cCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeE------EeeccceEEEEEcCCCCeEEEEE
Q 005656          322 VVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDA------IHVDVSITALSLSPNMDVLATAH  395 (685)
Q Consensus       322 ~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~------~~~~~~v~~v~~spdg~~Lat~~  395 (685)
                      ..+-........-..++..+.++|.  .++....+|.+.++++..+.....      +.-...+.+++|++.|+.++++.
T Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~  189 (381)
T d1xipa_         112 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWR  189 (381)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred             eeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeC
Confidence            8765544444445667888888875  466667789999999988764322      22344578888888888887764

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.75  E-value=3.6  Score=36.74  Aligned_cols=105  Identities=14%  Similarity=0.066  Sum_probs=52.3

Q ss_pred             CCEEEEEECC-----CeEEEEECCCCceEEEeecCC-ceeEEEEeecCCEEEEEeCC-----CeEEEEEcCCCeeEEEEe
Q 005656          264 NTLMISAGYH-----GDIKVWDFKGRDLKSRWEVGC-SLVKIVYHRVNGLLATVADD-----LVIRLFDVVALRMVRKFE  332 (685)
Q Consensus       264 ~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d-----g~I~i~d~~~~~~~~~~~  332 (685)
                      +..++.|+.+     ..+..||..+.+....-.... ..........+.+++.|+.+     .....+|..+.+....-.
T Consensus       149 ~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~  228 (288)
T d1zgka1         149 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP  228 (288)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCC
T ss_pred             ecceEecCcccccccceEEEeeccccccccccccccccccccccceeeeEEEecCccccccccceeeeeecceeeecccC
Confidence            4455555443     357888887665433222111 11112222345566665544     356778887765433222


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCCc
Q 005656          333 GHTDRITDFCFSEDGKWLLSSGMDG-----SLRIWDVILAR  368 (685)
Q Consensus       333 ~h~~~I~~l~~spdg~~l~s~s~Dg-----~I~iwd~~~~~  368 (685)
                      ........-+...++++++.|+.++     .|.+||+.+.+
T Consensus       229 ~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         229 MKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             CSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             ccCcccceEEEEECCEEEEEecCCCCeecceEEEEECCCCE
Confidence            1111221112223678888877554     37788887654

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=89.03  E-value=5.7  Score=33.42  Aligned_cols=114  Identities=10%  Similarity=0.019  Sum_probs=66.2

Q ss_pred             CCCcCEEEEEEcCCCCEEEEEEC---CCeEEEEECCCCceEEEeec--------CCceeEEEEeecCCEEEEEeCCCeEE
Q 005656          250 AHNGEVVGVACDSTNTLMISAGY---HGDIKVWDFKGRDLKSRWEV--------GCSLVKIVYHRVNGLLATVADDLVIR  318 (685)
Q Consensus       250 ~h~~~v~~l~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~--------~~~i~~~~~~~~~~~l~~~~~dg~I~  318 (685)
                      ...+.++.....+.++. +++-.   .....-+|+++++..+.--.        ...|+.+-+.|++++++++-.||.-+
T Consensus       184 pkeGS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~  262 (313)
T d2hu7a1         184 SGEGSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSA  262 (313)
T ss_dssp             CSSEEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEEE
T ss_pred             CCCCcccceeEccCcee-eeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCCCcEEEEEecCCchh
Confidence            44556666677776654 33321   12233558887765442211        24567777999999999999999999


Q ss_pred             EEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEE-EeCCCcEEEEEcCCCcee
Q 005656          319 LFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLS-SGMDGSLRIWDVILARQI  370 (685)
Q Consensus       319 i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s-~s~Dg~I~iwd~~~~~~i  370 (685)
                      +|.  +|+.+..-   .+.+..+..- ++....+ .|...--+|-.+++|+++
T Consensus       263 lF~--nGk~in~p---~G~~~gat~i-~~~iyfshsSL~tP~kI~~~~~~~~~  309 (313)
T d2hu7a1         263 VFI--DGERVEAP---QGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGEPL  309 (313)
T ss_dssp             EEE--TTEEECCC---SSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEE
T ss_pred             eee--cceEecCC---CCcccceEEE-CCEEEEeecccCCCceeEEcCCCCcc
Confidence            986  46655433   3344443332 3333333 334444567777777654

>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: GyrA/ParC C-terminal domain-like
family: GyrA/ParC C-terminal domain-like
domain: Topoisomerase IV subunit A, ParC, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=86.30  E-value=12  Score=34.13  Aligned_cols=190  Identities=11%  Similarity=0.066  Sum_probs=108.0

Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEE---CCCC------ccccccccccccccCCCCcCEEEEEE-cC--CCCEEEEE
Q 005656          203 TAVKACTISACGNFAVLGTAGGWIERFN---LQSG------ISRGSYLDMSERSNYAHNGEVVGVAC-DS--TNTLMISA  270 (685)
Q Consensus       203 ~~v~~~~~s~~g~~l~~g~~dg~i~~~d---~~~~------~~~~~~~~~~~~~~~~h~~~v~~l~~-~~--~~~~l~s~  270 (685)
                      ..+..+........+++=++.|.++...   +..+      .+...+.      .......+..+.. .+  ...+++..
T Consensus        39 D~v~~~~~~~t~d~ll~fT~~Grvy~l~v~eiP~~~~~s~G~pi~~ll------~l~~~e~ii~~~~~~~~~~~~~l~~~  112 (323)
T d1wp5a_          39 DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANII------PIDRDEEIIKAIPINDFELNGYFLFV  112 (323)
T ss_dssp             CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTS------CCCTTCCEEEEEEESCTTSSCEEEEE
T ss_pred             ceEEEEEEEcCCCEEEEEecCCEEEEEeeccCcccccccccccceeee------cccCCcceEEEeeccccccceeEEEE
Confidence            3444444444556666667788776654   3322      2222221      1123344444433 32  35788899


Q ss_pred             ECCCeEEEEECCCC--------ceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCee-------EEEEec-C
Q 005656          271 GYHGDIKVWDFKGR--------DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM-------VRKFEG-H  334 (685)
Q Consensus       271 s~dg~i~iwd~~~~--------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~-------~~~~~~-h  334 (685)
                      +..|.++..++...        .....+..+..+..+....+...++.++..|.+..|+...-..       ++-++- .
T Consensus       113 Tk~G~iKr~~l~~f~~~~~~~g~~~i~L~~~D~l~~v~~~~~~~~i~l~t~~G~~lrf~~~~vr~~gr~a~GV~~ikL~~  192 (323)
T d1wp5a_         113 TRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKE  192 (323)
T ss_dssp             ETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCT
T ss_pred             eehhheeeccHHHhhhhhccchhhhccccccccccceeccCCCeEEEEEEecceeeEeecccccccCccccccccccccc
Confidence            99999999986421        1112333446777777777778899999999999998764322       222221 2


Q ss_pred             CCCeEE-EEEcCCCCEEEEEeCCCcEEEEEcCCCce-------eeEEee---c-cceEEEEEcCCCCeEEEEEeCC
Q 005656          335 TDRITD-FCFSEDGKWLLSSGMDGSLRIWDVILARQ-------IDAIHV---D-VSITALSLSPNMDVLATAHVDQ  398 (685)
Q Consensus       335 ~~~I~~-l~~spdg~~l~s~s~Dg~I~iwd~~~~~~-------i~~~~~---~-~~v~~v~~spdg~~Lat~~~d~  398 (685)
                      ...|.+ ....+++..|+..+..|..+.-.+.....       +..++.   . ..+..+....+...|+..+..|
T Consensus       193 ~D~vv~~~~~~~~~~~ll~~T~~G~gKr~~~~e~~~~~RggkGv~~~k~~k~~~~~v~~~~~~~~~d~l~l~T~~g  268 (323)
T d1wp5a_         193 GDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKS  268 (323)
T ss_dssp             TCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTS
T ss_pred             ccccchhhhccccccceeeeeeeheeecccchhhccccccccccccccccccccceeeeeEecCCCCEEEEEeCCC
Confidence            234444 44556778899999999888766543211       222221   1 1255555555555555555555