Citrus Sinensis ID: 005711

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-
Protein Sequence
MELKRDLNVHSCRALKLQMLPLLLFLLLLCSNPSESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNLCLESSHGECNRTSLPLVPGKTLREEMTEGPISIWAFCLSFFVSFYLGVVALFCSARTRRYILQTKV
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccccccccccccccccccEEcccccccEEEEEccccccEEEccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHccccccEEcccccccccccccHHHHHccccccEEEEEccccEEEccHHHHccccccEEEccccccccccccccccccEEccccccccccccHHccccccccEEcccccccEEcccccccccccccccccccccccccccHHHHccccccEEcccccccEEEccHHHHcccccccccEEEccccccccccccccccccccccccccccEEcccccccccccccccEEEccccccEEccccccccccccccccccccEEcccccccccccccccEEEccccEEcccccHHccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHccccccccccccccccccccccEEEccccccccccccHHHHccccccEEEccccccccccccccccccccccccccccccccccHHcccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccEEHHHHHHHHHHHHHHHHHHHHHHHHccccHHcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccccccccccEEEEEEcccccEEEEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHcccccEEEEEccccccccccHHHHHHccHcccEEEcccccccccccHHHcccccccEEEccccccccccccccccccEEEEccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEcccccccccccHHHHccccccccEEEEccccccEEcccHHHHHcccccEEEccccEEEEEccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEccccccccccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEcccHcccccccEEEcccccccccccHHHcccccccEEEEcccccccccccccccccccHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
melkrdlnVHSCRALKLQMLPLLLFLLLLcsnpseslelnLEDKASLLLFKSLvqdptqklsswvgsnctnwtgvacnfqtghvvsinltdtslsgqvhprlckLSFLEFLVLSsnaftgristcfgglsglktldlsynkfvgVVPDAIMKLRNLRELILkgnpelggvfpgwvgnfsmnleklDFSFNSFCGEIPESLYYLKslkhldleknnltgnvHDFYQSLLVLNlgsnrfsgtlpCFAASAMSLTVLkldnnsvvggIPTCIASLQALTHLnlshnhlnyeispRLVFFEKLLLLDLsfndlsgplpskiaqTTEKAGLVLLDlshnrfsgeipLKITELKSLQALFLsnnlligeiparignLTYLQVIDLShnmlsgsiplniVGCFQLLALIVnnnnlsgeiqpeldaldslkildisnnqisgeipltlaglksleivdfssnnlsgslnDAITKWTNLKYFSIARNKlsgnlpnwLFSFQAIQMMDfstnkfmgfipdavgmdlsdnllhgtipkglfqlqgleylnlsfnfldgqvpglyrlrslraldlshnsltgqipgnisSLQELTLLNLsynsfsgfvpwkqgyqkfpgafagnpnlclesshgecnrtslplvpgktlreemtegpISIWAFCLSFFVSFYLGVVALFCSARTRRYILQTKV
Flexible Loop (DISEMBL)
melkrdlnVHSCRALKLQMLPLLLFLLLLCSNPSESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNLCLESSHGECNRTSLPLVPGKTLREEMTEGPISIWAFCLSFFVSFYLGVVALFCSARTRRYILQTKV
Low Complexity Region (SEG)
MELKRDLNVHSCRAlklqmlplllfllllCSNPSESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALThlnlshnhlnYEISPRLVFFEKlllldlsfndlsGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNLCLESSHGECNRTSLPLVPGKTLREEMTEGPISIWAFCLSFFVSFYLGVVALFCSARTRRYILQTKV
Disordered region (IsUnstruct)
******LNVHSCRALKLQMLPLLLFLLLLCSNPSESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNLCLESSHGECNRTSLPLVPGKTLREEMTEGPISIWAFCLSFFVSFYLGVVALFCSARTRRYIL****
Disordered Region (DISOPRED)
**************LKLQMLPLLLFLLLLCSNPSESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNLCLESSH*************************SIWAFCLSFFVSFYLGVVALFCSART**Y******
Disordered Region (DISEMBL)
MELKRDLNVHSCRALKLQMLPLLLFLLLLCSNPSESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNLCLESSHGECNRTSLPLVPGKTLREEMTEGPISIWAFCLSFFVSFYLGVVALFCSARTRRYILQTKV
Disordered Region (DISPRO)
MELKRDLNVHSCRALKLQMLPLLLFLLLLCSNPSESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNLCLESSHGECNRTSLPLVP*****EEMTEGPISIWAFCLSFFVSFYLGVVALFCSARTRR*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MELKRDLNVHSCRALKLQMLPLLLFLLLLCSNPSESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNLCLESSHGECNRTSLPLVPGKTLREEMTEGPISIWAFCLSFFVSFYLGVVALFCSARTRRYILQTKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	681	2.2.26 [Sep-21-2011]
O80809	720	Leucine-rich repeat recep	yes	no	0.945	0.894	0.612	0.0
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.870	0.567	0.314	1e-73
Q9FL28	1173	LRR receptor-like serine/	no	no	0.787	0.456	0.327	1e-70
Q42371	976	LRR receptor-like serine/	no	no	0.769	0.536	0.341	4e-70
Q9LHP4	1141	Receptor-like protein kin	no	no	0.778	0.464	0.350	9e-68
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.823	0.509	0.341	2e-67
O49545	1003	Leucine-rich repeat recep	no	no	0.817	0.555	0.357	5e-67
O82318	960	Probably inactive leucine	no	no	0.869	0.616	0.332	8e-67
Q9SSL9	1123	Leucine-rich repeat recep	no	no	0.753	0.456	0.327	5e-65
P93194	1109	Receptor-like protein kin	N/A	no	0.863	0.530	0.308	5e-65

>sp|O80809|CLV2_ARATH Leucine-rich repeat receptor-like protein CLAVATA2 OS=Arabidopsis thaliana GN=CLV2 PE=1 SV=1

 Score =  802 bits (2072), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/692 (61%), Positives = 521/692 (75%), Gaps = 48/692 (6%)

Query: 38  ELNLEDKASLLLFKSLVQDPTQKLSSWVGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQ 97
           +L+ +DKASLL+F+  + D  + LS+W GS+C+NWTG+AC   TG V+S+ L+  +LS Q
Sbjct: 29  DLDPQDKASLLIFRVSIHDLNRSLSTWYGSSCSNWTGLACQNPTGKVLSLTLSGLNLSSQ 88

Query: 98  VHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLR 157
           +HP LCKLS L+ L LS N F+G I +CFG L  L+TL+LS N+FVG +P   + L+ LR
Sbjct: 89  IHPSLCKLSSLQSLDLSHNNFSGNIPSCFGSLRNLRTLNLSRNRFVGSIPATFVSLKELR 148

Query: 158 ELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLT 217
           E++L  N +LGGV P W GNFSMNLE++DFSF SF GE+PESL YLKSLK+L+LE NN+T
Sbjct: 149 EVVLSENRDLGGVVPHWFGNFSMNLERVDFSFCSFVGELPESLLYLKSLKYLNLESNNMT 208

Query: 218 GNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTH 277
           G + DF Q L+VLNL SN+FSGTLPCF AS  SL++L +  NS+VGG+P+C+ SL+ L+H
Sbjct: 209 GTLRDFQQPLVVLNLASNQFSGTLPCFYASRPSLSILNIAENSLVGGLPSCLGSLKELSH 268

Query: 278 LNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFS 337
           LNLS N  NYEISPRL+F EKL++LDLS N  SG LPS+I++TTEK GLVLLDLSHN FS
Sbjct: 269 LNLSFNGFNYEISPRLMFSEKLVMLDLSHNGFSGRLPSRISETTEKLGLVLLDLSHNSFS 328

Query: 338 GEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQ 397
           G+IPL+ITELKSLQAL LS+NLL G+IPARIGNLTYLQVIDLSHN L+GSIPLNIVGCFQ
Sbjct: 329 GDIPLRITELKSLQALRLSHNLLTGDIPARIGNLTYLQVIDLSHNALTGSIPLNIVGCFQ 388

Query: 398 LLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLS 457
           LLAL+++NNNLSGEIQPELDALDSLKILDISNN ISGEIPLTLAGLKSLEIVD SSNNLS
Sbjct: 389 LLALMISNNNLSGEIQPELDALDSLKILDISNNHISGEIPLTLAGLKSLEIVDISSNNLS 448

Query: 458 GSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPD------- 510
           G+LN+AITKW+NLKY S+ARNK SG LP+WLF F  IQM+D+S+N+F  FIPD       
Sbjct: 449 GNLNEAITKWSNLKYLSLARNKFSGTLPSWLFKFDKIQMIDYSSNRFSWFIPDDNLNSTR 508

Query: 511 -----------------------------------------AVGMDLSDNLLHGTIPKGL 529
                                                     VG+DLSDNLLHG IP+ L
Sbjct: 509 FKDFQTGGGEGFAEPPGKVEIKISAAVVAKDELSFSYNLLSMVGIDLSDNLLHGEIPEAL 568

Query: 530 FQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSY 589
           F+ + +EYLNLS+NFL+GQ+P L +L  L+ALDLSHNSL+GQ+ GNIS+   LTLLNLS+
Sbjct: 569 FRQKNIEYLNLSYNFLEGQLPRLEKLPRLKALDLSHNSLSGQVIGNISAPPGLTLLNLSH 628

Query: 590 NSFSGFVPWKQGYQKFPGAFAGNPNLCLESSHGECNRTSLPLVPGKTLREEMTEGPISIW 649
           N FSG +  K+G  KFPGA AGNP LC+E+   +C+  ++     +  + E+ EGPISIW
Sbjct: 629 NCFSGIITEKEGLGKFPGALAGNPELCVETPGSKCDPANIDASQEEIYQNELVEGPISIW 688

Query: 650 AFCLSFFVSFYLGVVALFCSARTRRYILQTKV 681
            FCLS F+SF  GV+ +FCSAR R YILQTK 
Sbjct: 689 IFCLSAFISFDFGVLGIFCSARARSYILQTKA 720

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance. Involved in controlling the stem cell population size in shoot and root apical meristems, and during organ development. Promotes the formation of CLV1 multimers.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  278 bits (711), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 211/671 (31%), Positives = 329/671 (49%), Gaps = 78/671 (11%)

Query: 13  RALKLQMLPLLLFLLLLCSNPSESLELNLEDKASLLLFKSLV--QDPTQKLSSWVGSN-- 68
           +   LQ+L L++ ++L CS    ++   +E+  +LL +KS    Q  + KLSSWV  N  
Sbjct: 24  KPRDLQVL-LIISIVLSCS---FAVSATVEEANALLKWKSTFTNQTSSSKLSSWVNPNTS 79

Query: 69  --CTNWTGVACNFQTGHVVSINLTDTSL-------------------------SGQVHPR 101
             CT+W GVAC+   G ++ +NLT+T +                         SG + P 
Sbjct: 80  SFCTSWYGVACSL--GSIIRLNLTNTGIEGTFEDFPFSSLPNLTFVDLSMNRFSGTISPL 137

Query: 102 LCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELIL 161
             + S LE+  LS N   G I    G LS L TL L  NK  G +P  I +L  + E+ +
Sbjct: 138 WGRFSKLEYFDLSINQLVGEIPPELGDLSNLDTLHLVENKLNGSIPSEIGRLTKVTEIAI 197

Query: 162 KGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVH 221
             N  L G  P   GN +  L  L    NS  G IP  +  L +L+ L L++NNLTG + 
Sbjct: 198 YDN-LLTGPIPSSFGNLT-KLVNLYLFINSLSGSIPSEIGNLPNLRELCLDRNNLTGKIP 255

Query: 222 DFY---QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHL 278
             +   +++ +LN+  N+ SG +P    +  +L  L L  N + G IP+ + +++ L  L
Sbjct: 256 SSFGNLKNVTLLNMFENQLSGEIPPEIGNMTALDTLSLHTNKLTGPIPSTLGNIKTLAVL 315

Query: 279 NLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSG 338
           +L  N LN  I P L   E ++ L++S N L+GP+P    + T    L L D   N+ SG
Sbjct: 316 HLYLNQLNGSIPPELGEMESMIDLEISENKLTGPVPDSFGKLTALEWLFLRD---NQLSG 372

Query: 339 EIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQL 398
            IP  I     L  L L  N   G +P  I     L+ + L  N   G +P ++  C  L
Sbjct: 373 PIPPGIANSTELTVLQLDTNNFTGFLPDTICRGGKLENLTLDDNHFEGPVPKSLRDCKSL 432

Query: 399 LALIVNNNNLSGEIQPELDALDSLKILD------------------------ISNNQISG 434
           + +    N+ SG+I        +L  +D                        +SNN I+G
Sbjct: 433 IRVRFKGNSFSGDISEAFGVYPTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSNNSITG 492

Query: 435 EIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAI 494
            IP  +  +  L  +D SSN ++G L ++I+    +    +  N+LSG +P+ +     +
Sbjct: 493 AIPPEIWNMTQLSQLDLSSNRITGELPESISNINRISKLQLNGNRLSGKIPSGIRLLTNL 552

Query: 495 QMMDFSTNKFMGFIPDAVG-------MDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDG 547
           + +D S+N+F   IP  +        M+LS N L  TIP+GL +L  L+ L+LS+N LDG
Sbjct: 553 EYLDLSSNRFSSEIPPTLNNLPRLYYMNLSRNDLDQTIPEGLTKLSQLQMLDLSYNQLDG 612

Query: 548 QVPGLYR-LRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKF- 605
           ++   +R L++L  LDLSHN+L+GQIP +   +  LT +++S+N+  G +P    ++   
Sbjct: 613 EISSQFRSLQNLERLDLSHNNLSGQIPPSFKDMLALTHVDVSHNNLQGPIPDNAAFRNAP 672

Query: 606 PGAFAGNPNLC 616
           P AF GN +LC
Sbjct: 673 PDAFEGNKDLC 683

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  268 bits (685), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 206/629 (32%), Positives = 306/629 (48%), Gaps = 93/629 (14%)

Query: 56  DPTQKLSSW--VGS--NCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFL 111
           DP   LS W  +GS  +C NWTG+ C+  TGHVVS++L +  L G + P +  L++L+ L
Sbjct: 44  DPLGVLSDWTIIGSLRHC-NWTGITCD-STGHVVSVSLLEKQLEGVLSPAIANLTYLQVL 101

Query: 112 VLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN------P 165
            L+SN+FTG+I    G L+ L  L L  N F G +P  I +L+N+  L L+ N      P
Sbjct: 102 DLTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSIPSGIWELKNIFYLDLRNNLLSGDVP 161

Query: 166 E-----------------LGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKH 208
           E                 L G  P  +G+  ++L+    + N   G IP S+  L +L  
Sbjct: 162 EEICKTSSLVLIGFDYNNLTGKIPECLGDL-VHLQMFVAAGNHLTGSIPVSIGTLANLTD 220

Query: 209 LDLEKNNLTGNV-HDF--------------------------YQSLLVLNLGSNRFSGTL 241
           LDL  N LTG +  DF                            SL+ L L  N+ +G +
Sbjct: 221 LDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYDNQLTGKI 280

Query: 242 PCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLL 301
           P    + + L  L++  N +   IP+ +  L  LTHL LS NHL   IS  + F E L +
Sbjct: 281 PAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEIGFLESLEV 340

Query: 302 LDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLI 361
           L L  N+ +G  P  I   T    L +L +  N  SGE+P  +  L +L+ L   +NLL 
Sbjct: 341 LTLHSNNFTGEFPQSI---TNLRNLTVLTVGFNNISGELPADLGLLTNLRNLSAHDNLLT 397

Query: 362 GEIPARIGNLTYLQVIDLSHNMLSGSIPL-----------------------NIVGCFQL 398
           G IP+ I N T L+++DLSHN ++G IP                        +I  C  L
Sbjct: 398 GPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMNLTFISIGRNHFTGEIPDDIFNCSNL 457

Query: 399 LALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSG 458
             L V +NNL+G ++P +  L  L+IL +S N ++G IP  +  LK L I+   SN  +G
Sbjct: 458 ETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTG 517

Query: 459 SLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVG----- 513
            +   ++  T L+   +  N L G +P  +F  + + ++D S NKF G IP         
Sbjct: 518 RIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESL 577

Query: 514 --MDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG--LYRLRSLR-ALDLSHNSL 568
             + L  N  +G+IP  L  L  L   ++S N L G +PG  L  L++++  L+ S+N L
Sbjct: 578 TYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNFSNNLL 637

Query: 569 TGQIPGNISSLQELTLLNLSYNSFSGFVP 597
           TG IP  +  L+ +  ++LS N FSG +P
Sbjct: 638 TGTIPKELGKLEMVQEIDLSNNLFSGSIP 666

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1

 Score =  266 bits (680), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 200/586 (34%), Positives = 291/586 (49%), Gaps = 62/586 (10%)

Query: 42  EDKASLLLFKSLVQDPTQKLSSWVGSNCTN---WTGVACNFQTGHVVSINLTDTSLSGQV 98
           E+ A+LL  K   +D    L  W  S  ++   W GV+C   T +VV++NL+D +L G++
Sbjct: 25  EEGATLLEIKKSFKDVNNVLYDWTTSPSSDYCVWRGVSCENVTFNVVALNLSDLNLDGEI 84

Query: 99  HPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRE 158
            P +  L  L  + L  N  +G+I    G  S L+ LDLS+N+  G +P +I KL+ L +
Sbjct: 85  SPAIGDLKSLLSIDLRGNRLSGQIPDEIGDCSSLQNLDLSFNELSGDIPFSISKLKQLEQ 144

Query: 159 LILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTG 218
           LILK N +L G  P  +     NL+ LD + N   GEIP  +Y+ + L++L L  NNL G
Sbjct: 145 LILKNN-QLIGPIPSTLSQIP-NLKILDLAQNKLSGEIPRLIYWNEVLQYLGLRGNNLVG 202

Query: 219 NVH-DFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTH 277
           N+  D  Q                         L    + NNS+ G IP  I +  A   
Sbjct: 203 NISPDLCQ----------------------LTGLWYFDVRNNSLTGSIPETIGNCTAFQV 240

Query: 278 LNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFS 337
           L+LS+N L  EI P  + F ++  L L  N LSG +PS I        L +LDLS N  S
Sbjct: 241 LDLSYNQLTGEI-PFDIGFLQVATLSLQGNQLSGKIPSVIGLM---QALAVLDLSGNLLS 296

Query: 338 GEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQ 397
           G IP  +  L   + L+L +N L G IP  +GN++ L  ++L+ N L+G IP  +     
Sbjct: 297 GSIPPILGNLTFTEKLYLHSNKLTGSIPPELGNMSKLHYLELNDNHLTGHIPPELGKLTD 356

Query: 398 LLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLS 457
           L  L V NN+L G I   L +  +L  L++  N+ SG IP     L+S+  ++ SSNN+ 
Sbjct: 357 LFDLNVANNDLEGPIPDHLSSCTNLNSLNVHGNKFSGTIPRAFQKLESMTYLNLSSNNIK 416

Query: 458 GSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVG---- 513
           G +   +++  NL    ++ NK++G +P+ L   + +  M+ S N   G +P   G    
Sbjct: 417 GPIPVELSRIGNLDTLDLSNNKINGIIPSSLGDLEHLLKMNLSRNHITGVVPGDFGNLRS 476

Query: 514 ---MDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTG 570
              +DLS+N + G IP+ L QLQ +  L L  N L G V  L    SL  L++SHN+L G
Sbjct: 477 IMEIDLSNNDISGPIPEELNQLQNIILLRLENNNLTGNVGSLANCLSLTVLNVSHNNLVG 536

Query: 571 QIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNLC 616
            IP N              N+FS F          P +F GNP LC
Sbjct: 537 DIPKN--------------NNFSRFS---------PDSFIGNPGLC 559

Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  258 bits (660), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 202/577 (35%), Positives = 295/577 (51%), Gaps = 47/577 (8%)

Query: 87  INLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVV 146
           ++L+   L G +   L KL  LE L+L+SN  TG+I       S LK+L L  N   G +
Sbjct: 134 LDLSSNGLVGDIPWSLSKLRNLETLILNSNQLTGKIPPDISKCSKLKSLILFDNLLTGSI 193

Query: 147 PDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSL 206
           P  + KL  L  + + GN E+ G  P  +G+ S NL  L  +  S  G +P SL  LK L
Sbjct: 194 PTELGKLSGLEVIRIGGNKEISGQIPSEIGDCS-NLTVLGLAETSVSGNLPSSLGKLKKL 252

Query: 207 KHLDLEKNNLTGNVHDFY---QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVG 263
           + L +    ++G +         L+ L L  N  SG++P        L  L L  NS+VG
Sbjct: 253 ETLSIYTTMISGEIPSDLGNCSELVDLFLYENSLSGSIPREIGQLTKLEQLFLWQNSLVG 312

Query: 264 GIPTCIASLQALTHLNLSHNHLNYEISP---RLVFFEKLLLLDLSFNDLSGPLPSKIAQT 320
           GIP  I +   L  ++LS N L+  I     RL F E+ ++ D   N  SG +P+ I+  
Sbjct: 313 GIPEEIGNCSNLKMIDLSLNLLSGSIPSSIGRLSFLEEFMISD---NKFSGSIPTTISNC 369

Query: 321 TEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLS 380
           +    LV L L  N+ SG IP ++  L  L   F  +N L G IP  + + T LQ +DLS
Sbjct: 370 SS---LVQLQLDKNQISGLIPSELGTLTKLTLFFAWSNQLEGSIPPGLADCTDLQALDLS 426

Query: 381 HNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTL 440
            N L+G+IP  +     L  L++ +N+LSG I  E+    SL  L +  N+I+GEIP  +
Sbjct: 427 RNSLTGTIPSGLFMLRNLTKLLLISNSLSGFIPQEIGNCSSLVRLRLGFNRITGEIPSGI 486

Query: 441 AGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFS 500
             LK +  +DFSSN L G + D I   + L+   ++ N L G+LPN + S   +Q++D S
Sbjct: 487 GSLKKINFLDFSSNRLHGKVPDEIGSCSELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVS 546

Query: 501 TNKFMGFIPDAVG-------MDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-L 552
            N+F G IP ++G       + LS NL  G+IP  L    GL+ L+L  N L G++P  L
Sbjct: 547 ANQFSGKIPASLGRLVSLNKLILSKNLFSGSIPTSLGMCSGLQLLDLGSNELSGEIPSEL 606

Query: 553 YRLRSLR-ALDLSHNSLTGQIPGNISSLQELTL-----------------------LNLS 588
             + +L  AL+LS N LTG+IP  I+SL +L++                       LN+S
Sbjct: 607 GDIENLEIALNLSSNRLTGKIPSKIASLNKLSILDLSHNMLEGDLAPLANIENLVSLNIS 666

Query: 589 YNSFSGFVPWKQGYQKF-PGAFAGNPNLCLESSHGEC 624
           YNSFSG++P  + +++  P    GN  LC  S+   C
Sbjct: 667 YNSFSGYLPDNKLFRQLSPQDLEGNKKLC-SSTQDSC 702

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  257 bits (657), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 199/582 (34%), Positives = 300/582 (51%), Gaps = 21/582 (3%)

Query: 35  ESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSNCT--NWTGVAC-NFQTG-HVVSINLT 90
           E+  LNLE +  LL  KS   D  Q L +W  ++     WTGV C N+ +   V+S+NL+
Sbjct: 23  ETTGLNLEGQY-LLEIKSKFVDAKQNLRNWNSNDSVPCGWTGVMCSNYSSDPEVLSLNLS 81

Query: 91  DTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAI 150
              LSG++ P +  L  L+ L LS N  +G+I    G  S L+ L L+ N+F G +P  I
Sbjct: 82  SMVLSGKLSPSIGGLVHLKQLDLSYNGLSGKIPKEIGNCSSLEILKLNNNQFDGEIPVEI 141

Query: 151 MKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLD 210
            KL +L  LI+  N  + G  P  +GN  ++L +L    N+  G++P S+  LK L    
Sbjct: 142 GKLVSLENLIIYNN-RISGSLPVEIGNL-LSLSQLVTYSNNISGQLPRSIGNLKRLTSFR 199

Query: 211 LEKNNLTGNVHDFY---QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPT 267
             +N ++G++       +SL++L L  N+ SG LP        L+ + L  N   G IP 
Sbjct: 200 AGQNMISGSLPSEIGGCESLVMLGLAQNQLSGELPKEIGMLKKLSQVILWENEFSGFIPR 259

Query: 268 CIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLV 327
            I++  +L  L L  N L   I   L   + L  L L  N L+G +P +I   +     +
Sbjct: 260 EISNCTSLETLALYKNQLVGPIPKELGDLQSLEFLYLYRNGLNGTIPREIGNLSYA---I 316

Query: 328 LLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGS 387
            +D S N  +GEIPL++  ++ L+ L+L  N L G IP  +  L  L  +DLS N L+G 
Sbjct: 317 EIDFSENALTGEIPLELGNIEGLELLYLFENQLTGTIPVELSTLKNLSKLDLSINALTGP 376

Query: 388 IPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLE 447
           IPL       L  L +  N+LSG I P+L     L +LD+S+N +SG IP  L    ++ 
Sbjct: 377 IPLGFQYLRGLFMLQLFQNSLSGTIPPKLGWYSDLWVLDMSDNHLSGRIPSYLCLHSNMI 436

Query: 448 IVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGF 507
           I++  +NNLSG++   IT    L    +ARN L G  P+ L     +  ++   N+F G 
Sbjct: 437 ILNLGTNNLSGNIPTGITTCKTLVQLRLARNNLVGRFPSNLCKQVNVTAIELGQNRFRGS 496

Query: 508 IPDAVG-------MDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLR 559
           IP  VG       + L+DN   G +P+ +  L  L  LN+S N L G+VP  ++  + L+
Sbjct: 497 IPREVGNCSALQRLQLADNGFTGELPREIGMLSQLGTLNISSNKLTGEVPSEIFNCKMLQ 556

Query: 560 ALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQG 601
            LD+  N+ +G +P  + SL +L LL LS N+ SG +P   G
Sbjct: 557 RLDMCCNNFSGTLPSEVGSLYQLELLKLSNNNLSGTIPVALG 598

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49545|BAME1_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1

 Score =  256 bits (653), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 206/577 (35%), Positives = 285/577 (49%), Gaps = 20/577 (3%)

Query: 55  QDPTQKLSSW-VGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVL 113
            D    LSSW V ++   W GV C+    HV S++L+  +LSG + P +  L  L+ L L
Sbjct: 41  DDKNSPLSSWKVSTSFCTWIGVTCDVSRRHVTSLDLSGLNLSGTLSPDVSHLRLLQNLSL 100

Query: 114 SSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMK-LRNLRELILKGNPELGGVFP 172
           + N  +G I      LSGL+ L+LS N F G  PD I   L NLR L +  N  L G  P
Sbjct: 101 AENLISGPIPPEISSLSGLRHLNLSNNVFNGSFPDEISSGLVNLRVLDVYNN-NLTGDLP 159

Query: 173 GWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLN- 231
             V N +  L  L    N F G+IP S      +++L +  N L G +     +L  L  
Sbjct: 160 VSVTNLTQ-LRHLHLGGNYFAGKIPPSYGSWPVIEYLAVSGNELVGKIPPEIGNLTTLRE 218

Query: 232 --LGS-NRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYE 288
             +G  N F   LP    +   L      N  + G IP  I  LQ L  L L  N  +  
Sbjct: 219 LYIGYYNAFEDGLPPEIGNLSELVRFDGANCGLTGEIPPEIGKLQKLDTLFLQVNVFSGP 278

Query: 289 ISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELK 348
           ++  L     L  +DLS N  +G +P+  A   E   L LL+L  N+  GEIP  I +L 
Sbjct: 279 LTWELGTLSSLKSMDLSNNMFTGEIPASFA---ELKNLTLLNLFRNKLHGEIPEFIGDLP 335

Query: 349 SLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNL 408
            L+ L L  N   G IP ++G    L ++DLS N L+G++P N+    +L  LI   N L
Sbjct: 336 ELEVLQLWENNFTGSIPQKLGENGKLNLVDLSSNKLTGTLPPNMCSGNKLETLITLGNFL 395

Query: 409 SGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWT 468
            G I   L   +SL  + +  N ++G IP  L GL  L  V+   N LSG L  A     
Sbjct: 396 FGSIPDSLGKCESLTRIRMGENFLNGSIPKGLFGLPKLTQVELQDNYLSGELPVAGGVSV 455

Query: 469 NLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVG-------MDLSDNLL 521
           NL   S++ N+LSG LP  + +F  +Q +    NKF G IP  VG       +D S NL 
Sbjct: 456 NLGQISLSNNQLSGPLPPAIGNFTGVQKLLLDGNKFQGPIPSEVGKLQQLSKIDFSHNLF 515

Query: 522 HGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQ 580
            G I   + + + L +++LS N L G++P  +  ++ L  L+LS N L G IPG+ISS+Q
Sbjct: 516 SGRIAPEISRCKLLTFVDLSRNELSGEIPNEITAMKILNYLNLSRNHLVGSIPGSISSMQ 575

Query: 581 ELTLLNLSYNSFSGFVPWKQGYQKFP-GAFAGNPNLC 616
            LT L+ SYN+ SG VP    +  F   +F GNP+LC
Sbjct: 576 SLTSLDFSYNNLSGLVPGTGQFSYFNYTSFLGNPDLC 612

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1

 Score =  255 bits (652), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 228/685 (33%), Positives = 328/685 (47%), Gaps = 93/685 (13%)

Query: 24  LFLLLLCSNPSESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSNCTN---WTGVACNFQ 80
           LFL   C + +E LEL       LL FKS +QDP + LSSW  S+  +   W+GV CN  
Sbjct: 20  LFLNFSCLHANE-LEL-------LLSFKSSIQDPLKHLSSWSYSSTNDVCLWSGVVCN-N 70

Query: 81  TGHVVSINLTDTSLSGQV-HPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSG--LKTLDL 137
              VVS++L+  ++SGQ+      +L FL+ + LS+N  +G I       S   L+ L+L
Sbjct: 71  ISRVVSLDLSGKNMSGQILTAATFRLPFLQTINLSNNNLSGPIPHDIFTTSSPSLRYLNL 130

Query: 138 SYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIP 197
           S N F G +P                     G  P        NL  LD S N F GEI 
Sbjct: 131 SNNNFSGSIPR--------------------GFLP--------NLYTLDLSNNMFTGEIY 162

Query: 198 ESLYYLKSLKHLDLEKNNLTGNVHDFY---QSLLVLNLGSNRFSGTLPCFAASAMSLTVL 254
             +    +L+ LDL  N LTG+V  +      L  L L SN+ +G +P       +L  +
Sbjct: 163 NDIGVFSNLRVLDLGGNVLTGHVPGYLGNLSRLEFLTLASNQLTGGVPVELGKMKNLKWI 222

Query: 255 KLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLP 314
            L  N++ G IP  I  L +L HL+L +N+L+  I P L   +KL  + L  N LSG +P
Sbjct: 223 YLGYNNLSGEIPYQIGGLSSLNHLDLVYNNLSGPIPPSLGDLKKLEYMFLYQNKLSGQIP 282

Query: 315 SKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYL 374
             I        L+ LD S N  SGEIP  + +++SL+ L L +N L G+IP  + +L  L
Sbjct: 283 PSIFSL---QNLISLDFSDNSLSGEIPELVAQMQSLEILHLFSNNLTGKIPEGVTSLPRL 339

Query: 375 QVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISG 434
           +V+ L  N  SG IP N+     L  L ++ NNL+G++   L     L  L + +N +  
Sbjct: 340 KVLQLWSNRFSGGIPANLGKHNNLTVLDLSTNNLTGKLPDTLCDSGHLTKLILFSNSLDS 399

Query: 435 EIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAI 494
           +IP +L   +SLE V   +N  SG L    TK   + +  ++ N L GN+  W      +
Sbjct: 400 QIPPSLGMCQSLERVRLQNNGFSGKLPRGFTKLQLVNFLDLSNNNLQGNINTW--DMPQL 457

Query: 495 QMMDFSTNKFMGFIPD------AVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQ 548
           +M+D S NKF G +PD         +DLS N + G +P+GL     +  L+LS N + G 
Sbjct: 458 EMLDLSVNKFFGELPDFSRSKRLKKLDLSRNKISGVVPQGLMTFPEIMDLDLSENEITGV 517

Query: 549 VP-GLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWK-------- 599
           +P  L   ++L  LDLSHN+ TG+IP + +  Q L+ L+LS N  SG +P          
Sbjct: 518 IPRELSSCKNLVNLDLSHNNFTGEIPSSFAEFQVLSDLDLSCNQLSGEIPKNLGNIESLV 577

Query: 600 ---------QGYQKFPGAF--------AGNPNLCLESSHGECNRTSLPLVPGKTLREEMT 642
                     G   F GAF         GN +LC E+S          L P K +R+  T
Sbjct: 578 QVNISHNLLHGSLPFTGAFLAINATAVEGNIDLCSENSASG-------LRPCKVVRKRST 630

Query: 643 EGPISIWAFCLSFFVSFYLGVVALF 667
           +   S W    S F +F   +V+ F
Sbjct: 631 K---SWWLIITSTFAAFLAVLVSGF 652

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSL9|PEPR1_ARATH Leucine-rich repeat receptor-like protein kinase PEPR1 OS=Arabidopsis thaliana GN=PEPR1 PE=1 SV=1

 Score =  249 bits (636), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 197/601 (32%), Positives = 293/601 (48%), Gaps = 88/601 (14%)

Query: 57  PTQKLSSWV--GSNCT--NWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLV 112
           P Q  S+W    S  T  NW G+ C+  + +V S+N T + +SGQ+ P + +L  L+ L 
Sbjct: 47  PPQVTSTWKINASEATPCNWFGITCD-DSKNVASLNFTRSRVSGQLGPEIGELKSLQILD 105

Query: 113 LSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFP 172
           LS+N F+G I +  G  + L TLDLS N F   +PD +  L+ L  L L           
Sbjct: 106 LSTNNFSGTIPSTLGNCTKLATLDLSENGFSDKIPDTLDSLKRLEVLYLY---------- 155

Query: 173 GWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFY---QSLLV 229
                            N   GE+PESL+ +  L+ L L+ NNLTG +       + L+ 
Sbjct: 156 ----------------INFLTGELPESLFRIPKLQVLYLDYNNLTGPIPQSIGDAKELVE 199

Query: 230 LNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEI 289
           L++ +N+FSG +P    ++ SL +L L  N +VG +P  +  L  LT L + +N L   +
Sbjct: 200 LSMYANQFSGNIPESIGNSSSLQILYLHRNKLVGSLPESLNLLGNLTTLFVGNNSLQGPV 259

Query: 290 SPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVL--------------------- 328
                  + LL LDLS+N+  G +P  +   +    LV+                     
Sbjct: 260 RFGSPNCKNLLTLDLSYNEFEGGVPPALGNCSSLDALVIVSGNLSGTIPSSLGMLKNLTI 319

Query: 329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSI 388
           L+LS NR SG IP ++    SL  L L++N L+G IP+ +G L  L+ ++L  N  SG I
Sbjct: 320 LNLSENRLSGSIPAELGNCSSLNLLKLNDNQLVGGIPSALGKLRKLESLELFENRFSGEI 379

Query: 389 PLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKI------------------------ 424
           P+ I     L  L+V  NNL+GE+  E+  +  LKI                        
Sbjct: 380 PIEIWKSQSLTQLLVYQNNLTGELPVEMTEMKKLKIATLFNNSFYGAIPPGLGVNSSLEE 439

Query: 425 LDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNL 484
           +D   N+++GEIP  L   + L I++  SN L G++  +I     ++ F +  N LSG L
Sbjct: 440 VDFIGNKLTGEIPPNLCHGRKLRILNLGSNLLHGTIPASIGHCKTIRRFILRENNLSGLL 499

Query: 485 PNWLFSFQAIQMMDFSTNKFMGFIPDAVG-------MDLSDNLLHGTIPKGLFQLQGLEY 537
           P +     ++  +DF++N F G IP ++G       ++LS N   G IP  L  LQ L Y
Sbjct: 500 PEF-SQDHSLSFLDFNSNNFEGPIPGSLGSCKNLSSINLSRNRFTGQIPPQLGNLQNLGY 558

Query: 538 LNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFV 596
           +NLS N L+G +P  L    SL   D+  NSL G +P N S+ + LT L LS N FSG +
Sbjct: 559 MNLSRNLLEGSLPAQLSNCVSLERFDVGFNSLNGSVPSNFSNWKGLTTLVLSENRFSGGI 618

Query: 597 P 597
           P
Sbjct: 619 P 619

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P93194|RPK1_IPONI Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2

 Score =  249 bits (636), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 224/726 (30%), Positives = 326/726 (44%), Gaps = 138/726 (19%)

Query: 25  FLLLLCSNPS--ESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSNCT--NWTGVACNFQ 80
           FLL LCS  S   +  LN +  A L L +     P+    SW  S+ T  +W GV C+ +
Sbjct: 8   FLLFLCSTSSIYAAFALNSDGAALLSLTRHWTSIPSDITQSWNASDSTPCSWLGVECDRR 67

Query: 81  TGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYN 140
              V ++NL+   +SG+  P +  L  L+ +VLS N F G I +  G  S L+ +DLS N
Sbjct: 68  Q-FVDTLNLSSYGISGEFGPEISHLKHLKKVVLSGNGFFGSIPSQLGNCSLLEHIDLSSN 126

Query: 141 KFVGVVPDAIMKLRNLRELILKGN------PE-----------------LGGVFPGWVGN 177
            F G +PD +  L+NLR L L  N      PE                 L G  P  +GN
Sbjct: 127 SFTGNIPDTLGALQNLRNLSLFFNSLIGPFPESLLSIPHLETVYFTGNGLNGSIPSNIGN 186

Query: 178 FSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVH---DFYQSLLVLNLGS 234
            S  L  L    N F G +P SL  + +L+ L L  NNL G +    +  ++L+ L++ +
Sbjct: 187 MS-ELTTLWLDDNQFSGPVPSSLGNITTLQELYLNDNNLVGTLPVTLNNLENLVYLDVRN 245

Query: 235 NRFSGTLPCFAASAMSLTVLKLDNNSVVGG------------------------IPTCIA 270
           N   G +P    S   +  + L NN   GG                        IP+C  
Sbjct: 246 NSLVGAIPLDFVSCKQIDTISLSNNQFTGGLPPGLGNCTSLREFGAFSCALSGPIPSCFG 305

Query: 271 SLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVL-- 328
            L  L  L L+ NH +  I P L   + ++ L L  N L G +P ++   ++   L L  
Sbjct: 306 QLTKLDTLYLAGNHFSGRIPPELGKCKSMIDLQLQQNQLEGEIPGELGMLSQLQYLHLYT 365

Query: 329 -------------------LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIG 369
                              L L  N  SGE+P+ +TELK L +L L  N   G IP  +G
Sbjct: 366 NNLSGEVPLSIWKIQSLQSLQLYQNNLSGELPVDMTELKQLVSLALYENHFTGVIPQDLG 425

Query: 370 NLTYLQVIDLSHNMLSGSIPLNIV------------------------GCFQLLALIVNN 405
             + L+V+DL+ NM +G IP N+                         GC  L  LI+  
Sbjct: 426 ANSSLEVLDLTRNMFTGHIPPNLCSQKKLKRLLLGYNYLEGSVPSDLGGCSTLERLILEE 485

Query: 406 NNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAIT 465
           NNL G + P+     +L   D+S N  +G IP +L  LK++  +  SSN LSGS+   + 
Sbjct: 486 NNLRGGL-PDFVEKQNLLFFDLSGNNFTGPIPPSLGNLKNVTAIYLSSNQLSGSIPPELG 544

Query: 466 KWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVG-------MDLSD 518
               L++ +++ N L G LP+ L +   +  +D S N   G IP  +G       + L +
Sbjct: 545 SLVKLEHLNLSHNILKGILPSELSNCHKLSELDASHNLLNGSIPSTLGSLTELTKLSLGE 604

Query: 519 NLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGN--- 575
           N   G IP  LFQ   L  L L  N L G +P +  L++LR+L+LS N L GQ+P +   
Sbjct: 605 NSFSGGIPTSLFQSNKLLNLQLGGNLLAGDIPPVGALQALRSLNLSSNKLNGQLPIDLGK 664

Query: 576 --------------------ISSLQELTLLNLSYNSFSGFVPWKQGYQKF----PGAFAG 611
                               +S++Q LT +N+S+N FSG VP      KF    P +F+G
Sbjct: 665 LKMLEELDVSHNNLSGTLRVLSTIQSLTFINISHNLFSGPVP--PSLTKFLNSSPTSFSG 722

Query: 612 NPNLCL 617
           N +LC+
Sbjct: 723 NSDLCI 728

Possible role in short-day photoperiod floral induction.

Ipomoea nil (taxid: 35883)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	681
255543116	730	serine-threonine protein kinase, plant-t	0.995	0.928	0.687	0.0
224128812	725	predicted protein [Populus trichocarpa]	0.948	0.891	0.690	0.0
225431007	740	PREDICTED: leucine-rich repeat receptor-	0.951	0.875	0.659	0.0
307135992	754	serine-threonine protein kinase [Cucumis	0.982	0.887	0.649	0.0
449449617	754	PREDICTED: leucine-rich repeat receptor-	0.955	0.863	0.653	0.0
449485363	754	PREDICTED: LOW QUALITY PROTEIN: leucine-	0.955	0.863	0.652	0.0
356530025	717	PREDICTED: leucine-rich repeat receptor-	0.967	0.919	0.639	0.0
356566941	717	PREDICTED: leucine-rich repeat receptor-	0.967	0.919	0.636	0.0
357507683	719	Receptor-like protein kinase [Medicago t	0.967	0.916	0.631	0.0
336088213	724	leucine-rich repeat receptor-like protei	0.953	0.896	0.638	0.0

>gi|255543116|ref|XP_002512621.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223548582|gb|EEF50073.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  939 bits (2428), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/733 (68%), Positives = 581/733 (79%), Gaps = 55/733 (7%)

Query: 1   MELKRDLNVHSCRALKLQMLPLLLFLLLLCSNPSESLELNLEDKASLLLFKSLVQDPTQK 60
           MELK  L +  C+ LKL +L   L  LLLCS  S  ++L+ ED+ASL+ F++ +Q+P + 
Sbjct: 1   MELKWVLAIGHCKILKLHLL-PFLISLLLCSYQSHCIDLHPEDRASLIKFRAHIQEPNRY 59

Query: 61  L-SSWVGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFT 119
           L S+WVGSNCTNWTG+AC  QTG V+SINLT+ +LSG +HP LC+L  LE LVLS N FT
Sbjct: 60  LLSTWVGSNCTNWTGIACENQTGRVISINLTNMNLSGYIHPNLCRLISLESLVLSENGFT 119

Query: 120 GRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFS 179
           G+I  CFG L  LK LDLS+N+F G VPD +M+L  LREL L GN +LGG  P WVGNFS
Sbjct: 120 GQIPLCFGWLQNLKVLDLSHNRFGGAVPDTLMRLSQLRELNLNGNHDLGGPLPLWVGNFS 179

Query: 180 MNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSG 239
            +LEKLD SFNSF GEIPESL++L SLK+LDL  N L+GN+HDFYQSL+VLNLGSN FSG
Sbjct: 180 SSLEKLDMSFNSFQGEIPESLFHLNSLKYLDLRNNFLSGNLHDFYQSLVVLNLGSNTFSG 239

Query: 240 TLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKL 299
           TLPCF+AS  SL VL L NNS++GGIPTCI+SL+ L HLNLS NHLN+ ISPRLVF E+L
Sbjct: 240 TLPCFSASVQSLNVLNLANNSIMGGIPTCISSLKELRHLNLSFNHLNHAISPRLVFSEEL 299

Query: 300 LLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNL 359
           L LDLSFNDLSGPLP+KIA+TTEK+GLVLLDLSHNRFSG IPLKITELKSLQALFLS+NL
Sbjct: 300 LELDLSFNDLSGPLPTKIAETTEKSGLVLLDLSHNRFSGGIPLKITELKSLQALFLSHNL 359

Query: 360 LIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDAL 419
           L GEIPARIGNLTYLQVIDLSHN LSGSIPLNIVGCFQLLAL++NNNNLSGEIQPELDAL
Sbjct: 360 LSGEIPARIGNLTYLQVIDLSHNSLSGSIPLNIVGCFQLLALVLNNNNLSGEIQPELDAL 419

Query: 420 DSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNK 479
           DSLKILDI+NN+ISGEIPLTLAG +SLEIVDFSSNNLSG+LNDAITKW+NL+Y S+ARNK
Sbjct: 420 DSLKILDINNNKISGEIPLTLAGCRSLEIVDFSSNNLSGNLNDAITKWSNLRYLSLARNK 479

Query: 480 LSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDA---------------------------- 511
            +G+LP+WLF+F AIQ+MDFS NKF GFIPD                             
Sbjct: 480 FTGSLPSWLFTFDAIQLMDFSGNKFSGFIPDGNFNISLNFNNGDIVQRLPTESFILLQAV 539

Query: 512 -----------------------VGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQ 548
                                  VG+DLSDNLLHG IP+ LF LQGLEYLNLS+NFLDG+
Sbjct: 540 EIKISVLVVDSNELSFSYHLSSVVGIDLSDNLLHGEIPESLFGLQGLEYLNLSYNFLDGE 599

Query: 549 VPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGA 608
           +PGL ++ SLRALDLSHNSL+GQIPGNISSL+ LTLLNLSYNSFSGFVP K+GY+KFPGA
Sbjct: 600 IPGLEKMSSLRALDLSHNSLSGQIPGNISSLKGLTLLNLSYNSFSGFVPKKEGYRKFPGA 659

Query: 609 FAGNPNLCLESSHGECNRTSLPLVPGKTLREEMTEGPISIWAFCLSFFVSFYLGVVALFC 668
           FAGNP+LC+ESS G C+  SLP VPGK+  EEM EGPIS+W FCL  F+SFY GV+ L C
Sbjct: 660 FAGNPDLCVESSGGRCDAASLPAVPGKS-SEEM-EGPISVWVFCLGAFISFYFGVMVLCC 717

Query: 669 SARTRRYILQTKV 681
           SAR R+YILQTKV
Sbjct: 718 SARARKYILQTKV 730

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128812|ref|XP_002328973.1| predicted protein [Populus trichocarpa] gi|222839207|gb|EEE77558.1| predicted protein [Populus trichocarpa]

 Score =  914 bits (2361), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/698 (69%), Positives = 544/698 (77%), Gaps = 52/698 (7%)

Query: 34  SESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSNCTNWTGVACNFQTGHVVSINLTDTS 93
           S S++LN EDKASLLLF+S +QDP   LS+W GSNCT+WTG+AC   TG V+SINL + +
Sbjct: 30  SASVDLNPEDKASLLLFRSWIQDPVHGLSTWFGSNCTDWTGLACQNHTGQVISINLRNVN 89

Query: 94  LSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKL 153
           LSG +HP LC L FLE LVLS N FTG+I  CFG L  LKTLDLS+N+F GVVPD+++ L
Sbjct: 90  LSGYIHPNLCNLLFLETLVLSENGFTGQIPLCFGRLQNLKTLDLSHNRFGGVVPDSLVTL 149

Query: 154 RNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEK 213
           R L+EL L GN +LGGV P WVGNFS NLE LD  FNSF G IPESL+Y KSLK+LDL  
Sbjct: 150 RQLKELSLNGNHDLGGVVPWWVGNFSSNLEILDLGFNSFHGTIPESLFYCKSLKYLDLGN 209

Query: 214 NNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQ 273
           N L+G++HDF+Q L+ LNL SN  SGTLPCF+AS  SL VL L  NS+VGGIPTCIASL+
Sbjct: 210 NYLSGDLHDFFQPLVFLNLSSNSLSGTLPCFSASIRSLGVLNLARNSIVGGIPTCIASLE 269

Query: 274 ALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSH 333
            LTHLNLS NHLNY ISPRLVF EKLL LDLSFNDLSGPLP+KIA+TTEK+GLVLLDLSH
Sbjct: 270 ELTHLNLSFNHLNYAISPRLVFSEKLLALDLSFNDLSGPLPTKIAETTEKSGLVLLDLSH 329

Query: 334 NRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIV 393
           N FSG IPLKITELKSLQALFLS+NLL GEIPARIGNLTYLQVIDLS N LSGSIPLNIV
Sbjct: 330 NCFSGGIPLKITELKSLQALFLSHNLLTGEIPARIGNLTYLQVIDLSRNSLSGSIPLNIV 389

Query: 394 GCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSS 453
           GCFQLLAL++NNNNLSG+IQPELDALDSLK+LDISNN ISGEIPLTLAG KSLEIVDFSS
Sbjct: 390 GCFQLLALVLNNNNLSGQIQPELDALDSLKVLDISNNGISGEIPLTLAGCKSLEIVDFSS 449

Query: 454 NNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDA-- 511
           NNLSG+LNDAITKW+NL+Y S+ARNK SG+LP+WLF+F+ IQMMDFS NKF GF+PD   
Sbjct: 450 NNLSGNLNDAITKWSNLRYLSLARNKFSGSLPSWLFTFEEIQMMDFSGNKFSGFVPDGNF 509

Query: 512 ------------------------------------------------VGMDLSDNLLHG 523
                                                            G+DLSDNLLHG
Sbjct: 510 NISLEFNNGDVRRLPAEPFLAIRNIEIKISVLVVDNSELSFNYHLSSTAGIDLSDNLLHG 569

Query: 524 TIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELT 583
            IP GLF LQGLEYLNLS+NFLDGQVP L ++  LRALDLSHNSL+GQIPGNIS L+EL 
Sbjct: 570 EIPHGLFGLQGLEYLNLSYNFLDGQVPSLEKMERLRALDLSHNSLSGQIPGNISRLKELV 629

Query: 584 LLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNLCLESSHGECNRTSLPLVPGKTLREEMTE 643
           LLN SYNS SGFVP K+GY +FPGAFAGNP+LC+ES   +C+  SLP VPGK+  E  TE
Sbjct: 630 LLNFSYNSLSGFVPQKEGYGRFPGAFAGNPDLCVESPRLKCDSGSLPTVPGKSFEE--TE 687

Query: 644 GPISIWAFCLSFFVSFYLGVVALFCSARTRRYILQTKV 681
           GPIS+W FC+S FVSFY  VV LFCS R R Y+LQTKV
Sbjct: 688 GPISVWIFCISAFVSFYFCVVTLFCSTRARSYLLQTKV 725

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431007|ref|XP_002272643.1| PREDICTED: leucine-rich repeat receptor-like protein CLAVATA2 [Vitis vinifera] gi|297735293|emb|CBI17655.3| unnamed protein product [Vitis vinifera]

 Score =  899 bits (2322), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/699 (65%), Positives = 538/699 (76%), Gaps = 51/699 (7%)

Query: 34  SESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSNCTNWTGVACNFQTGHVVSINLTDTS 93
           S S+ELN + +ASLLLFKS +QDP Q LS+WVG NCT+W G+ C+ QTG ++S+NLT  +
Sbjct: 42  SASVELNPDHQASLLLFKSWLQDPNQALSTWVGFNCTSWAGLTCHNQTGWLISLNLTAIN 101

Query: 94  LSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKL 153
           LSG +HP LC ++ LE LVLS N F G I  CFG + GLKTLDL +N+F G +P   +KL
Sbjct: 102 LSGPLHPMLCMITTLETLVLSRNNFNGTIPQCFGNIWGLKTLDLGFNRFSGDIPGTFVKL 161

Query: 154 RNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEK 213
           R+LREL+L GN  LGG  P W+GNFS  LEKLD S N F G+IP+SL+YL+SL++LDL  
Sbjct: 162 RHLRELLLNGNQGLGGFLPSWIGNFSKKLEKLDLSSNMFRGKIPKSLFYLESLEYLDLGN 221

Query: 214 NNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQ 273
           N L GNV +F+Q L+ LNLGSN  SGTLPCF+AS  SL+VL L NNS+VGGIPTCIASL+
Sbjct: 222 NYLLGNVGEFHQPLVYLNLGSNELSGTLPCFSASVESLSVLNLANNSIVGGIPTCIASLR 281

Query: 274 ALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSH 333
           +L+ LNLS N L YEISPRLVF EKLL+LDLSFNDLSGPLPSKIA+TT+K+GLVLLDLSH
Sbjct: 282 SLSRLNLSSNGLKYEISPRLVFSEKLLVLDLSFNDLSGPLPSKIAETTDKSGLVLLDLSH 341

Query: 334 NRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIV 393
           N+ SGEIP +ITELKSLQALFLS+NLL GEIPARIGNLTYLQVIDLSHN LSGSIP NIV
Sbjct: 342 NQVSGEIPSRITELKSLQALFLSHNLLTGEIPARIGNLTYLQVIDLSHNSLSGSIPSNIV 401

Query: 394 GCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSS 453
           GCFQLLALI+N+NNL GEIQPELDALDSLKILDISNN+ISGEIPLTLAG KSLE+VDFS 
Sbjct: 402 GCFQLLALILNDNNLYGEIQPELDALDSLKILDISNNKISGEIPLTLAGCKSLEVVDFSC 461

Query: 454 NNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDA-- 511
           NNLSG+LNDAITKW NL++ S+ARNK +G LPNWLF+FQ +Q MD S N+F GFIPD   
Sbjct: 462 NNLSGALNDAITKWQNLRFLSLARNKFNGALPNWLFTFQMMQAMDLSGNRFSGFIPDGNF 521

Query: 512 -------------------------------------------------VGMDLSDNLLH 522
                                                            VG+DLS NLLH
Sbjct: 522 NISLNFNYNDIGPRTPEEPLITIQDPEIKAFATVAGSNELSFNYDLFSTVGIDLSGNLLH 581

Query: 523 GTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQEL 582
           G IP GLF LQGLEYLNLS+NFLDGQ+PGL +++ LR LDLSHNSL+GQIP NISSL+ L
Sbjct: 582 GEIPAGLFGLQGLEYLNLSYNFLDGQIPGLEKMQRLRILDLSHNSLSGQIPENISSLRNL 641

Query: 583 TLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNLCLESSHGECNRTSLPLVPGKTLREEMT 642
           TLLNLSYN FSG VP +QGY +FPGAFAGNP LC+ESS G+C   S+P VP K  +EEM 
Sbjct: 642 TLLNLSYNCFSGIVPKEQGYWRFPGAFAGNPGLCVESSGGKCEMASIPTVPAKAFKEEME 701

Query: 643 EGPISIWAFCLSFFVSFYLGVVALFCSARTRRYILQTKV 681
           +GPIS+W F +S  VSFY GVV++FCSAR R YI+QTKV
Sbjct: 702 DGPISVWVFGVSAIVSFYSGVVSMFCSARARNYIMQTKV 740

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307135992|gb|ADN33850.1| serine-threonine protein kinase [Cucumis melo subsp. melo]

 Score =  884 bits (2284), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/721 (64%), Positives = 552/721 (76%), Gaps = 52/721 (7%)

Query: 11  SCRALKLQMLPLLLFLLLLCSNPSESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSNCT 70
           S ++L    L LL FLL+ C NPS+S EL+ ED+ASLL FKS +QDP + LSSWVGSNC+
Sbjct: 36  SSKSLDYHAL-LLSFLLIFCLNPSQSAELDPEDEASLLAFKSSIQDPNKNLSSWVGSNCS 94

Query: 71  NWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLS 130
           +W G+AC  +TG VVSI LTD +LSGQ++   C LSFLE LVLS N F+  I +C G L 
Sbjct: 95  DWAGIACENKTGRVVSIKLTDMNLSGQINSGFCNLSFLEHLVLSQNNFSCSIPSCLGNLI 154

Query: 131 GLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFN 190
            L+T+DLS N+F GVVP+ +MKL NL ELIL GN +LGG  P W+GNFS  L+KLD  FN
Sbjct: 155 RLRTVDLSRNRFRGVVPETLMKLENLEELILVGNQDLGGPIPSWIGNFSTKLQKLDLGFN 214

Query: 191 SFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMS 250
           SF GE+PESL    SLKHLDL+ N L GNV+DF Q L+ LNL SNRFSGTLPCF+A   S
Sbjct: 215 SFSGEMPESLLNSTSLKHLDLQNNYLKGNVYDFLQPLVSLNLMSNRFSGTLPCFSACTRS 274

Query: 251 LTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLS 310
           LTVL L NNS+ GG+PTCIASL+AL  LNLS NHL Y++SPRL+F E+LL+LDLS NDL 
Sbjct: 275 LTVLNLANNSIFGGVPTCIASLRALVQLNLSSNHLTYKMSPRLLFAEQLLVLDLSNNDLY 334

Query: 311 GPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGN 370
           GPLPS I +T EK+GLVLLDLSHNRFSG IP KITEL+SLQALFLS+NLL+GEIPARIGN
Sbjct: 335 GPLPSMIVETIEKSGLVLLDLSHNRFSGGIPSKITELRSLQALFLSHNLLVGEIPARIGN 394

Query: 371 LTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNN 430
           LTYLQVIDLS+N LSGSIPLNIVGCFQLLALI+NNNNLSGEIQPELDALDSLKILDISNN
Sbjct: 395 LTYLQVIDLSYNYLSGSIPLNIVGCFQLLALILNNNNLSGEIQPELDALDSLKILDISNN 454

Query: 431 QISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFS 490
            ISGE+PLTLAG KSLEIVDFSSNNLSG+LNDAITKW+NL+Y S+ARNK  GNLP+WLF+
Sbjct: 455 MISGEVPLTLAGCKSLEIVDFSSNNLSGNLNDAITKWSNLRYLSLARNKFIGNLPSWLFA 514

Query: 491 FQAIQMMDFSTNKFMGFIPD---------------------------------------- 510
           F+ IQ+MDFS+NKF G IPD                                        
Sbjct: 515 FEVIQLMDFSSNKFSGPIPDVNFNISSNFNSGDISRPSNEPFAAKKVVNFKVSTVVDVGS 574

Query: 511 ----------AVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRA 560
                     AVG+DLS+NLLHG+IP+GL+ L+GL+YLNLS+N L+GQVPGL +++S+RA
Sbjct: 575 ELQFNYDLSSAVGIDLSNNLLHGSIPEGLYSLEGLQYLNLSYNSLEGQVPGLEKMQSVRA 634

Query: 561 LDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNLCLESS 620
           LDLSHN L+G+IPGNIS L++LTLL+LSYN FSG V  KQG+ +FPGAFAGNP+LC+ESS
Sbjct: 635 LDLSHNYLSGEIPGNISILEDLTLLDLSYNCFSGLVSEKQGFGRFPGAFAGNPDLCVESS 694

Query: 621 HGECNRTSLPLVPGKTLREEMTEGPISIWAFCLSFFVSFYLGVVALFCSARTRRYILQTK 680
              C  + +P VPGK + +  TEGPIS+W FCLS F+SFY G V+L CSAR R Y L TK
Sbjct: 695 GEGCRSSGIPTVPGK-ISDGETEGPISVWIFCLSAFISFYFGTVSLLCSARARNYFLHTK 753

Query: 681 V 681
            
Sbjct: 754 A 754

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449617|ref|XP_004142561.1| PREDICTED: leucine-rich repeat receptor-like protein CLAVATA2-like [Cucumis sativus]

 Score =  876 bits (2264), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/702 (65%), Positives = 542/702 (77%), Gaps = 51/702 (7%)

Query: 30  CSNPSESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSNCTNWTGVACNFQTGHVVSINL 89
           C NPS S+EL+ ED+ASLL FKS +QDP + LSSWVGSNC++W G+AC  +TG VVSI L
Sbjct: 54  CFNPSHSVELDPEDEASLLAFKSSLQDPNKNLSSWVGSNCSDWAGIACENKTGRVVSIKL 113

Query: 90  TDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDA 149
           T+ +LSGQ++   C LSFLE LVLS N F+  I +C G L  L+T+DLS N+F GVVP+ 
Sbjct: 114 TEMNLSGQINSGFCNLSFLEHLVLSQNNFSCSIPSCLGNLIRLRTVDLSRNRFRGVVPET 173

Query: 150 IMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHL 209
           +MKL NL EL+L GN +LGG  P W+GNFS  L+KLD  FNSF GE+PESL    SLKHL
Sbjct: 174 LMKLENLEELVLVGNQDLGGPIPSWIGNFSTKLQKLDLGFNSFSGELPESLLNSTSLKHL 233

Query: 210 DLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCI 269
           DL+ N L GNV+DF+Q L+ LNL SNRFSGTLPCF+A   SLTVL L NNS+ GG+PTCI
Sbjct: 234 DLQNNYLKGNVYDFHQPLVSLNLMSNRFSGTLPCFSACTRSLTVLNLANNSIFGGVPTCI 293

Query: 270 ASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLL 329
           ASL+AL  LNLS NHL Y++SPRL+F E+LL+LDLS NDL GPLPS I +T EK+GLVLL
Sbjct: 294 ASLRALVQLNLSSNHLTYKMSPRLLFAEQLLVLDLSNNDLYGPLPSMIVETIEKSGLVLL 353

Query: 330 DLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIP 389
           DLSHNRFSG IP KITEL+SLQALFLS+NLL+GEIPARIGNLTYLQVIDLS+N LSGSIP
Sbjct: 354 DLSHNRFSGGIPSKITELRSLQALFLSHNLLVGEIPARIGNLTYLQVIDLSYNYLSGSIP 413

Query: 390 LNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIV 449
           LNIVGCFQLLALI+NNNNLSGEIQPELDALDSLKILDISNN ISGE+PLTLAG KSLEIV
Sbjct: 414 LNIVGCFQLLALILNNNNLSGEIQPELDALDSLKILDISNNMISGEVPLTLAGCKSLEIV 473

Query: 450 DFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIP 509
           DFSSNNLSG+LNDAITKW+NL+Y S+ARNK  GNLP+WLF+F+ IQ+MDFS+NKF G IP
Sbjct: 474 DFSSNNLSGNLNDAITKWSNLRYLSLARNKFIGNLPSWLFAFEVIQLMDFSSNKFSGPIP 533

Query: 510 D--------------------------------------------------AVGMDLSDN 519
           D                                                  AVG+DLS+N
Sbjct: 534 DVNFNISSNFNSGDTSRPSNEAFATKEVVNFKVSTVVDVGSELQFNYDLSSAVGIDLSNN 593

Query: 520 LLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSL 579
           LLHG+IP+GL+ L+GL+YLNLS+N L+GQVPGL +++S+RALDLSHN L+G+IPGNIS L
Sbjct: 594 LLHGSIPEGLYSLEGLQYLNLSYNSLEGQVPGLEKMQSIRALDLSHNYLSGEIPGNISIL 653

Query: 580 QELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNLCLESSHGECNRTSLPLVPGKTLRE 639
           ++LTLL+LSYN FSG V  KQG+ +FPGAFAGNP+LC+ESS   C  + +P VPGK + +
Sbjct: 654 EDLTLLDLSYNCFSGLVSEKQGFGRFPGAFAGNPDLCVESSGEGCRSSGIPTVPGK-ISD 712

Query: 640 EMTEGPISIWAFCLSFFVSFYLGVVALFCSARTRRYILQTKV 681
             TEGPIS+W FCLS FVSFY G V+L CSAR R Y L TK 
Sbjct: 713 GETEGPISVWIFCLSAFVSFYFGTVSLLCSARARNYFLHTKA 754

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449485363|ref|XP_004157145.1| PREDICTED: LOW QUALITY PROTEIN: leucine-rich repeat receptor-like protein CLAVATA2-like [Cucumis sativus]

 Score =  875 bits (2260), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/702 (65%), Positives = 541/702 (77%), Gaps = 51/702 (7%)

Query: 30  CSNPSESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSNCTNWTGVACNFQTGHVVSINL 89
           C NPS S+EL+ ED+ASLL FKS +QDP + LSSWVGSNC++W G+AC  +TG VVSI L
Sbjct: 54  CFNPSHSVELDPEDEASLLAFKSSLQDPNKNLSSWVGSNCSDWAGIACENKTGRVVSIKL 113

Query: 90  TDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDA 149
           T+ +LSGQ++   C LSFLE LVLS N F+  I +C G L  L+T+DLS N+F GVVP+ 
Sbjct: 114 TEMNLSGQINSGFCNLSFLEHLVLSQNNFSCSIPSCLGNLIRLRTVDLSRNRFRGVVPET 173

Query: 150 IMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHL 209
           +MKL NL EL+L GN + GG  P W+GNFS  L+KLD  FNSF GE+PESL    SLKHL
Sbjct: 174 LMKLENLEELVLVGNQDXGGPIPSWIGNFSTKLQKLDLGFNSFSGELPESLLNSTSLKHL 233

Query: 210 DLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCI 269
           DL+ N L GNV+DF+Q L+ LNL SNRFSGTLPCF+A   SLTVL L NNS+ GG+PTCI
Sbjct: 234 DLQNNYLKGNVYDFHQPLVSLNLMSNRFSGTLPCFSACTRSLTVLNLANNSIFGGVPTCI 293

Query: 270 ASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLL 329
           ASL+AL  LNLS NHL Y++SPRL+F E+LL+LDLS NDL GPLPS I +T EK+GLVLL
Sbjct: 294 ASLRALVQLNLSSNHLTYKMSPRLLFAEQLLVLDLSNNDLYGPLPSMIVETIEKSGLVLL 353

Query: 330 DLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIP 389
           DLSHNRFSG IP KITEL+SLQALFLS+NLL+GEIPARIGNLTYLQVIDLS+N LSGSIP
Sbjct: 354 DLSHNRFSGGIPSKITELRSLQALFLSHNLLVGEIPARIGNLTYLQVIDLSYNYLSGSIP 413

Query: 390 LNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIV 449
           LNIVGCFQLLALI+NNNNLSGEIQPELDALDSLKILDISNN ISGE+PLTLAG KSLEIV
Sbjct: 414 LNIVGCFQLLALILNNNNLSGEIQPELDALDSLKILDISNNMISGEVPLTLAGCKSLEIV 473

Query: 450 DFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIP 509
           DFSSNNLSG+LNDAITKW+NL+Y S+ARNK  GNLP+WLF+F+ IQ+MDFS+NKF G IP
Sbjct: 474 DFSSNNLSGNLNDAITKWSNLRYLSLARNKFIGNLPSWLFAFEVIQLMDFSSNKFSGPIP 533

Query: 510 D--------------------------------------------------AVGMDLSDN 519
           D                                                  AVG+DLS+N
Sbjct: 534 DVNFNISSNFNSGDTSRPSNEAFATKEVVNFKVSTVVDVGSELQFNYDLSSAVGIDLSNN 593

Query: 520 LLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSL 579
           LLHG+IP+GL+ L+GL+YLNLS+N L+GQVPGL +++S+RALDLSHN L+G+IPGNIS L
Sbjct: 594 LLHGSIPEGLYSLEGLQYLNLSYNSLEGQVPGLEKMQSIRALDLSHNYLSGEIPGNISIL 653

Query: 580 QELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNLCLESSHGECNRTSLPLVPGKTLRE 639
           ++LTLL+LSYN FSG V  KQG+ +FPGAFAGNP+LC+ESS   C  + +P VPGK + +
Sbjct: 654 EDLTLLDLSYNCFSGLVSEKQGFGRFPGAFAGNPDLCVESSGEGCRSSGIPTVPGK-ISD 712

Query: 640 EMTEGPISIWAFCLSFFVSFYLGVVALFCSARTRRYILQTKV 681
             TEGPIS+W FCLS FVSFY G V+L CSAR R Y L TK 
Sbjct: 713 GETEGPISVWIFCLSAFVSFYFGTVSLLCSARARNYFLHTKA 754

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530025|ref|XP_003533585.1| PREDICTED: leucine-rich repeat receptor-like protein CLAVATA2-like [Glycine max]

 Score =  872 bits (2254), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/707 (63%), Positives = 531/707 (75%), Gaps = 48/707 (6%)

Query: 23  LLFLLLLCSNPSESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSNCTNWTGVACNFQTG 82
           LL ++LL + PS S++++ +D+ SL LF+S + +P Q L SWVGSNCT+W+G+ C+ +TG
Sbjct: 11  LLCMILLFATPSLSIDVHPQDRISLSLFRSSLPNPNQSLPSWVGSNCTSWSGITCDSRTG 70

Query: 83  HVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKF 142
            V+SINLT  +LSG++HP LC LS+L  L LS N FT  +  CFG L  L+ +DLS+N+F
Sbjct: 71  RVLSINLTSMNLSGKIHPSLCHLSYLNKLGLSHNNFTAPLPECFGNLLNLRAIDLSHNRF 130

Query: 143 VGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYY 202
            G +PD+ M+LR+L EL+  GNP LGG  P W+GNFS NLEKL   F SF G IPESL Y
Sbjct: 131 HGGIPDSFMRLRHLTELVFSGNPGLGGPLPAWIGNFSANLEKLHLGFCSFSGGIPESLLY 190

Query: 203 LKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVV 262
           +KSLK+LDLE N L GN+ DF Q L++LNL SN+F+GTLPCFAAS  SLTVL L NNS+ 
Sbjct: 191 MKSLKYLDLENNLLFGNLVDFQQPLVLLNLASNQFAGTLPCFAASVQSLTVLNLSNNSIA 250

Query: 263 GGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTE 322
           GG+P CIAS QALTHLNLS NHL Y I PRLVF EKLL+LDLS N LSGP+PSKIA+TT+
Sbjct: 251 GGLPACIASFQALTHLNLSGNHLKYRIYPRLVFSEKLLVLDLSNNALSGPIPSKIAETTD 310

Query: 323 KAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHN 382
           K GLVLLDLSHN+FSGEIP+KITELKSLQALFLS+NLL GEIPARIGNLTYLQVIDLSHN
Sbjct: 311 KLGLVLLDLSHNQFSGEIPVKITELKSLQALFLSHNLLSGEIPARIGNLTYLQVIDLSHN 370

Query: 383 MLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAG 442
            LSG+IP +IVGCFQL ALI+NNNNLSG IQPE DALD L+ILDISNN+ SG IPLTLAG
Sbjct: 371 SLSGTIPFSIVGCFQLYALILNNNNLSGVIQPEFDALDILRILDISNNRFSGAIPLTLAG 430

Query: 443 LKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTN 502
            KSLEIVDFSSN LSGSLNDAITKWTNL+Y S+A+NK S NLP+WLF+F AI+MMDFS N
Sbjct: 431 CKSLEIVDFSSNELSGSLNDAITKWTNLRYLSLAQNKFSENLPSWLFTFNAIEMMDFSHN 490

Query: 503 KFMGFIPD------------------------------------------------AVGM 514
           KF GFIPD                                                 VG+
Sbjct: 491 KFTGFIPDINFKGSLIFNTRNVTVKEPLVAARKVQLRVSAVVSDSNQLSFTYDLSSMVGI 550

Query: 515 DLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPG 574
           DLS N LHG IP+GLF L GLEYLNLS NFL GQ+PGL +++SL+ALDLSHNSL+G IPG
Sbjct: 551 DLSSNSLHGEIPRGLFGLSGLEYLNLSCNFLYGQLPGLQKMQSLKALDLSHNSLSGHIPG 610

Query: 575 NISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNLCLESSHGECNRTSLPLVPG 634
           NIS LQ+L++LNLSYN FSG VP KQGY +FPGAFAGNP+LC+ESS G C+        G
Sbjct: 611 NISILQDLSILNLSYNCFSGCVPQKQGYGRFPGAFAGNPDLCMESSSGLCDDGRTQSAQG 670

Query: 635 KTLREEMTEGPISIWAFCLSFFVSFYLGVVALFCSARTRRYILQTKV 681
            T RE+  + PIS+  F +S FVSF  GVV LFCSAR R YILQTKV
Sbjct: 671 STFREDRMDDPISVGIFFISAFVSFDFGVVVLFCSARARNYILQTKV 717

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566941|ref|XP_003551683.1| PREDICTED: leucine-rich repeat receptor-like protein CLAVATA2-like [Glycine max]

 Score =  856 bits (2212), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/707 (63%), Positives = 534/707 (75%), Gaps = 48/707 (6%)

Query: 23  LLFLLLLCSNPSESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSNCTNWTGVACNFQTG 82
           LL ++LL + PS S++++ +D+ SL +F+S + +P Q L SWVGSNCT+W+G+ C+ +TG
Sbjct: 11  LLCVILLFATPSHSIDVHPQDRISLSMFRSSLPNPNQSLPSWVGSNCTSWSGITCDNRTG 70

Query: 83  HVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKF 142
            V+SINLT  +LSG++HP LC LS+L  L LS N FT  +  CFG L  L+ +DLS+N+ 
Sbjct: 71  RVLSINLTSMNLSGKIHPSLCYLSYLNKLGLSHNNFTSPLPECFGNLLNLRAIDLSHNRL 130

Query: 143 VGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYY 202
            G +PD+ M+LR+L EL+L GNP+LGG  P W+GNFS NLE+L   F SF G IPESL Y
Sbjct: 131 HGGIPDSFMRLRHLTELVLSGNPDLGGPLPAWIGNFSANLERLHLGFCSFSGGIPESLLY 190

Query: 203 LKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVV 262
           LKSLK+LDLE N L+GN+ +F Q L++LNL SN+F+GTLPCFAAS  SLTVL L NNS+V
Sbjct: 191 LKSLKYLDLENNLLSGNLVNFQQPLVLLNLASNQFAGTLPCFAASVQSLTVLNLSNNSIV 250

Query: 263 GGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTE 322
           GG+P CIAS QALTHLNLS NHL Y I PRLVF EKLL+LDLS N LSGP+P KIA+TTE
Sbjct: 251 GGLPACIASFQALTHLNLSGNHLKYRIYPRLVFSEKLLVLDLSNNALSGPIPCKIAETTE 310

Query: 323 KAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHN 382
           K GLVLLDLSHN+FSGEIP+KITELKSLQALFLS+NLL GEIPARIGNLTYLQVIDLSHN
Sbjct: 311 KLGLVLLDLSHNQFSGEIPVKITELKSLQALFLSHNLLSGEIPARIGNLTYLQVIDLSHN 370

Query: 383 MLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAG 442
            LSG+IP +IVGCFQL ALI+ NNNLSG IQPE DALD L+ILDISNN+ SG IPLTLAG
Sbjct: 371 SLSGTIPFSIVGCFQLYALILTNNNLSGVIQPEFDALDILRILDISNNRFSGAIPLTLAG 430

Query: 443 LKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTN 502
            KSLEIVDFSSN LSGSLNDAITKWTNL+Y S+A+NK SGNLP+WLF+F AI+MMDFS N
Sbjct: 431 CKSLEIVDFSSNELSGSLNDAITKWTNLRYLSLAQNKFSGNLPSWLFTFNAIEMMDFSHN 490

Query: 503 KFMGFIPD------------------------------------------------AVGM 514
           KF GFIPD                                                 VG+
Sbjct: 491 KFTGFIPDINFKGSLIFNTRNVTVKEPLVAARKVQLRVSAVVSDSNQLSFTYDLSSMVGI 550

Query: 515 DLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPG 574
           DLS N LHG IP+GLF L GLEYLNLS NFL GQ+PGL ++ SL+ALDLSHNSL+G IPG
Sbjct: 551 DLSSNSLHGEIPRGLFGLAGLEYLNLSCNFLYGQLPGLQKMHSLKALDLSHNSLSGHIPG 610

Query: 575 NISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNLCLESSHGECNRTSLPLVPG 634
           NISSLQ+L++LNLSYN FSG+VP KQGY +FPGAFAGNP+LC+E+S G C+        G
Sbjct: 611 NISSLQDLSILNLSYNCFSGYVPQKQGYGRFPGAFAGNPDLCMETSSGVCDDGRTQSAQG 670

Query: 635 KTLREEMTEGPISIWAFCLSFFVSFYLGVVALFCSARTRRYILQTKV 681
            +  E+  +GPIS+  F +S FVSF  GVV LFCSAR R YILQTKV
Sbjct: 671 SSFSEDRMDGPISVGIFFISAFVSFDFGVVVLFCSARARNYILQTKV 717

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357507683|ref|XP_003624130.1| Receptor-like protein kinase [Medicago truncatula] gi|355499145|gb|AES80348.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  854 bits (2206), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/708 (63%), Positives = 531/708 (75%), Gaps = 49/708 (6%)

Query: 23  LLFLLLLCSNPSESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSNCTNWTGVACNFQTG 82
           L +L+L C   S S++++ +DK SLLLFKS + DP+Q L++WVGSNCT W G+ C   TG
Sbjct: 12  LFYLILHCVTLSHSIDIHPQDKKSLLLFKSSLHDPSQSLTNWVGSNCTTWVGITCENTTG 71

Query: 83  HVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKF 142
            VVSINL   +LSGQ+HP  C L +LE +  S N FT  +  CFG L  L+ +DLS+N+F
Sbjct: 72  RVVSINLNSMNLSGQIHPNFCNLLYLEKVDFSHNNFTCTLPVCFGDLLNLRVIDLSHNRF 131

Query: 143 VGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYY 202
            G +P++ M+L++L EL+L  NP LGG+ P W+GNFS NLE++   + SF G IPESL Y
Sbjct: 132 HGGIPNSFMRLKHLTELVLNENPPLGGLLPFWIGNFSANLERVQLGYCSFSGSIPESLLY 191

Query: 203 LKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVV 262
           LKSLK+LDL  N L+GN+ DF QS + LNLGSN+F+GTLPCFAAS  SLTVL L NNS+V
Sbjct: 192 LKSLKYLDLGSNLLSGNLVDFQQSFVFLNLGSNQFTGTLPCFAASVQSLTVLNLSNNSIV 251

Query: 263 GGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTE 322
           GG+P CIA+ QALTHLNLS NHL Y I  RLVF EKL++LDLS N+LSGP+PSKIA+TTE
Sbjct: 252 GGLPACIANFQALTHLNLSRNHLKYRIYSRLVFSEKLVVLDLSNNELSGPIPSKIAETTE 311

Query: 323 KAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHN 382
           K GLV LDLSHN+FSGEIPLKITELKSLQALFLS+NLL GEIPARIGNLTYLQVID+SHN
Sbjct: 312 KLGLVFLDLSHNQFSGEIPLKITELKSLQALFLSHNLLSGEIPARIGNLTYLQVIDISHN 371

Query: 383 MLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAG 442
            LSG+IP +IVGCFQL ALI+NNNNLSG IQPE DALD L+ILDISNN+ SG IPLTLAG
Sbjct: 372 SLSGTIPFSIVGCFQLYALILNNNNLSGVIQPEFDALDILRILDISNNRFSGAIPLTLAG 431

Query: 443 LKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTN 502
            KSLEIVDFSSN+LSGSLNDAITKWTNL+Y S+A NK +GNLP+WLF+FQAI+ MD S N
Sbjct: 432 CKSLEIVDFSSNDLSGSLNDAITKWTNLRYLSLAWNKFNGNLPSWLFAFQAIETMDLSHN 491

Query: 503 KFMGFIPD-------------------------------------------------AVG 513
           KF GFIPD                                                   G
Sbjct: 492 KFSGFIPDINLKGSLLFNTRNVTVKEPFVEATKVFEPRVSVVVSDSNQLSFTYDHSSMFG 551

Query: 514 MDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIP 573
           +DLSDNLLHG IP+GLF L GLEYLNLS NFL+GQ+PGL +++SL+A+DLSHNSL+G IP
Sbjct: 552 IDLSDNLLHGEIPRGLFGLSGLEYLNLSNNFLNGQLPGLQKMQSLKAIDLSHNSLSGHIP 611

Query: 574 GNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNLCLESSHGECNRTSLPLVP 633
           GNISSLQ+LT+LNLSYN FSG+VP KQGY +FPGAFAGNP+LCLES  G C    +P   
Sbjct: 612 GNISSLQDLTILNLSYNCFSGYVPQKQGYGRFPGAFAGNPDLCLESPSGVCEDGRIPSNQ 671

Query: 634 GKTLREEMTEGPISIWAFCLSFFVSFYLGVVALFCSARTRRYILQTKV 681
           G   +E+  +GPIS+  F +S FVSF  GVV LFCSARTR+YILQTK 
Sbjct: 672 GSYFKEDKMDGPISVGIFFISAFVSFDFGVVVLFCSARTRKYILQTKT 719

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|336088213|dbj|BAK39955.1| leucine-rich repeat receptor-like protein [Lotus japonicus]

 Score =  853 bits (2204), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/697 (63%), Positives = 527/697 (75%), Gaps = 48/697 (6%)

Query: 33  PSESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSNCTNWTGVACNFQTGHVVSINLTDT 92
           PS S++++ +DKASLL F++ +Q P Q L +WVGSNC+ W G+ C+  TG V+SINLT+ 
Sbjct: 28  PSNSIDIHPQDKASLLKFRAWLQYPNQSLPNWVGSNCSTWNGITCDNSTGRVISINLTNM 87

Query: 93  SLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMK 152
           +LS Q+HP  C LS+L  +VLS N FT  +  CFG L  LK +DLS+N+F G +PD+ M+
Sbjct: 88  NLSSQIHPSFCNLSYLNKVVLSHNNFTCPLPVCFGNLLNLKAIDLSHNQFHGGIPDSFMR 147

Query: 153 LRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLE 212
           L++L EL+L GNP+LGG  P W+GNFS NLE+L   F+S  G IPESL YLKSLK+LDLE
Sbjct: 148 LKHLTELVLSGNPDLGGPLPSWIGNFSANLERLHLGFSSLSGVIPESLLYLKSLKYLDLE 207

Query: 213 KNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASL 272
            N L+GN+ DF+Q L+ LNL SN+ SGTLPCFAAS  SLTVL L NNS+VGG+P C+AS 
Sbjct: 208 DNLLSGNLVDFHQPLVFLNLASNQLSGTLPCFAASVQSLTVLNLSNNSIVGGLPACVASF 267

Query: 273 QALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLS 332
           QALTHLNLS NHL Y I PRLVF EKLL+LDLS ND SGP+PSKIA+TTEK GLVLLDLS
Sbjct: 268 QALTHLNLSGNHLKYRIYPRLVFSEKLLVLDLSNNDFSGPIPSKIAETTEKLGLVLLDLS 327

Query: 333 HNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNI 392
           HN+FSGEIP+KITELKSLQALFLS+NLL GEIPARIGNLTYLQVIDLSHN LSG+IP +I
Sbjct: 328 HNQFSGEIPVKITELKSLQALFLSHNLLSGEIPARIGNLTYLQVIDLSHNSLSGTIPFSI 387

Query: 393 VGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFS 452
           VGCFQL ALI+NNNNLSG IQPE DALD L+ILDISNN  SG IPLTLAG KSLEIVDF 
Sbjct: 388 VGCFQLYALILNNNNLSGVIQPEFDALDILRILDISNNGFSGAIPLTLAGCKSLEIVDFR 447

Query: 453 SNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPD-- 510
           SN+LSGSLNDAITKWTNL+Y S+A NK SG+LP+WLF+F++I+ MDFS NKF GFIPD  
Sbjct: 448 SNDLSGSLNDAITKWTNLRYLSLAENKFSGDLPSWLFTFESIETMDFSHNKFSGFIPDIN 507

Query: 511 ----------------------------------------------AVGMDLSDNLLHGT 524
                                                          VG+DLS NLLHG 
Sbjct: 508 FKGSLIFNTRNVTVKEPLAAPKEFQLRVSAVVSDSNQLSFTYDLSSMVGIDLSSNLLHGE 567

Query: 525 IPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTL 584
           IP+GLF L  LEY+NLS+NFLDGQ+PGL +++SL+ALDLSHNSL+G IPGNIS+LQ L +
Sbjct: 568 IPRGLFGLTSLEYMNLSYNFLDGQLPGLQKMQSLKALDLSHNSLSGHIPGNISTLQGLAV 627

Query: 585 LNLSYNSFSGFVPWKQGYQKFPGAFAGNPNLCLESSHGECNRTSLPLVPGKTLREEMTEG 644
           LNLSYN FSG+VP KQGY +FPGAFAGNP+LCLESS+G C+    P   G +  E+  +G
Sbjct: 628 LNLSYNCFSGYVPQKQGYGRFPGAFAGNPDLCLESSNGICDGGRTPSARGTSFGEDGMDG 687

Query: 645 PISIWAFCLSFFVSFYLGVVALFCSARTRRYILQTKV 681
           PIS+  F +S FVSF  GVV LFCSAR R YIL TKV
Sbjct: 688 PISVGIFFISAFVSFDFGVVVLFCSARARNYILHTKV 724

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	681
TAIR|locus:2206245	720	CLV2 "clavata 2" [Arabidopsis	0.826	0.781	0.590	1.2e-170
UNIPROTKB|Q940E8	613	fea2 "Fasciated ear2" [Zea may	0.571	0.634	0.451	4.5e-82
TAIR|locus:2043540	960	AT2G25790 [Arabidopsis thalian	0.889	0.631	0.322	1e-68
TAIR|locus:4515102753	598	AT1G73066 [Arabidopsis thalian	0.810	0.923	0.337	2.1e-68
TAIR|locus:2005540	999	HAE "HAESA" [Arabidopsis thali	0.850	0.579	0.337	2.8e-68
TAIR|locus:2025545	1029	AT1G08590 [Arabidopsis thalian	0.842	0.557	0.329	2.1e-66
TAIR|locus:2160791	1102	AT5G63930 [Arabidopsis thalian	0.819	0.506	0.328	2.1e-66
TAIR|locus:2169965	1003	BAM1 "BARELY ANY MERISTEM 1" [	0.837	0.568	0.344	5.8e-66
TAIR|locus:2139885	1013	AT4G28650 [Arabidopsis thalian	0.832	0.559	0.325	1.4e-65
TAIR|locus:2122239	1136	AT4G36180 [Arabidopsis thalian	0.797	0.477	0.338	2.4e-65

TAIR|locus:2206245 CLV2 "clavata 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1659 (589.1 bits), Expect = 1.2e-170, P = 1.2e-170
 Identities = 334/566 (59%), Positives = 418/566 (73%)

Query:    34 SESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSNCTNWTGVACNFQTGHVVSINLTDTS 93
             S+  +L+ +DKASLL+F+  + D  + LS+W GS+C+NWTG+AC   TG V+S+ L+  +
Sbjct:    25 SQLPDLDPQDKASLLIFRVSIHDLNRSLSTWYGSSCSNWTGLACQNPTGKVLSLTLSGLN 84

Query:    94 LSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKL 153
             LS Q+HP LCKLS L+ L LS N F+G I +CFG L  L+TL+LS N+FVG +P   + L
Sbjct:    85 LSSQIHPSLCKLSSLQSLDLSHNNFSGNIPSCFGSLRNLRTLNLSRNRFVGSIPATFVSL 144

Query:   154 RNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEK 213
             + LRE++L  N +LGGV P W GNFSMNLE++DFSF SF GE+PESL YLKSLK+L+LE 
Sbjct:   145 KELREVVLSENRDLGGVVPHWFGNFSMNLERVDFSFCSFVGELPESLLYLKSLKYLNLES 204

Query:   214 NNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQ 273
             NN+TG + DF Q L+VLNL SN+FSGTLPCF AS  SL++L +  NS+VGG+P+C+ SL+
Sbjct:   205 NNMTGTLRDFQQPLVVLNLASNQFSGTLPCFYASRPSLSILNIAENSLVGGLPSCLGSLK 264

Query:   274 ALTXXXXXXXXXXYEISPRLVFFEKXXXXXXXXXXXXGPLPSKIAQTTEKAGLVLLDLSH 333
              L+          YEISPRL+F EK            G LPS+I++TTEK GLVLLDLSH
Sbjct:   265 ELSHLNLSFNGFNYEISPRLMFSEKLVMLDLSHNGFSGRLPSRISETTEKLGLVLLDLSH 324

Query:   334 NRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIV 393
             N FSG+IPL+ITELKSLQAL LS+NLL G+IPARIGNLTYLQVIDLSHN L+GSIPLNIV
Sbjct:   325 NSFSGDIPLRITELKSLQALRLSHNLLTGDIPARIGNLTYLQVIDLSHNALTGSIPLNIV 384

Query:   394 GCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSS 453
             GCFQLLAL+++NNNLSGEIQPELDALDSLKILDISNN ISGEIPLTLAGLKSLEIVD SS
Sbjct:   385 GCFQLLALMISNNNLSGEIQPELDALDSLKILDISNNHISGEIPLTLAGLKSLEIVDISS 444

Query:   454 NNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDA-V 512
             NNLSG+LN+AITKW+NLKY S+ARNK SG LP+WLF F  IQM+D+S+N+F  FIPD  +
Sbjct:   445 NNLSGNLNEAITKWSNLKYLSLARNKFSGTLPSWLFKFDKIQMIDYSSNRFSWFIPDDNL 504

Query:   513 GMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFL-DGQVPGLYRLRSLRALDLSHNSLTGQ 571
                   +   G   +G  +  G   + +S   +   ++   Y L S+  +DLS N L G+
Sbjct:   505 NSTRFKDFQTGG-GEGFAEPPGKVEIKISAAVVAKDELSFSYNLLSMVGIDLSDNLLHGE 563

Query:   572 IPGNISSLQELTLLNLSYNSFSGFVP 597
             IP  +   + +  LNLSYN   G +P
Sbjct:   564 IPEALFRQKNIEYLNLSYNFLEGQLP 589

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=TAS

GO:0016020 "membrane" evidence=ISS

GO:0048507 "meristem development" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=IMP;RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0016570 "histone modification" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0009653 "anatomical structure morphogenesis" evidence=IMP

GO:0040008 "regulation of growth" evidence=IMP

UNIPROTKB|Q940E8 fea2 "Fasciated ear2" [Zea mays (taxid:4577)]

 Score = 823 (294.8 bits), Expect = 4.5e-82, P = 4.5e-82
 Identities = 181/401 (45%), Positives = 252/401 (62%)

Query:   205 SLKHLDLEKNNLTGNVHDFYQSLL----VLNLGSNRFSGTLPCFAASAMSLTVLKLDNNS 260
             S+  L L   NLTG +     +LL     L+L +N  SG LPC  +   SL  L L  N+
Sbjct:    81 SVAELSLRGLNLTGVIPAAPLALLRRLRTLDLSANALSGELPC--SLPRSLLALDLSRNA 138

Query:   261 VVGGIPTCI-ASLQALTXXXXXXXXXXYEISPRLVFFEKXXXXXXXXXXXXGPLPSKIAQ 319
             + G +PTC+ +SL AL             +SPRL F  +            G +P +I  
Sbjct:   139 LSGAVPTCLPSSLPALRTLNLSANFLRLPLSPRLSFPARLAALDLSRNAISGAVPPRIVA 198

Query:   320 TTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDL 379
               + + L+LLDLSHNRFSGEIP  I  ++SLQ LFL++N L G+IP  IGNLTYLQV+DL
Sbjct:   199 DPDNSALLLLDLSHNRFSGEIPAGIAAVRSLQGLFLADNQLSGDIPPGIGNLTYLQVLDL 258

Query:   380 SHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLT 439
             S+N LSGS+P  + GCFQLL L +  N LSG ++PELDAL SLK+LD+SNN+ISGEIPL 
Sbjct:   259 SNNRLSGSVPAGLAGCFQLLYLQLGGNQLSGALRPELDALASLKVLDLSNNKISGEIPLP 318

Query:   440 LAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDF 499
             LAG +SLE+VD S N +SG L+ A+ KW +LK+ S+A N+LSG+LP+W+FSF  +Q +D 
Sbjct:   319 LAGCRSLEVVDLSGNEISGELSSAVAKWLSLKFLSLAGNQLSGHLPDWMFSFPLLQWLDL 378

Query:   500 STNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLE---YLNLSFNFLDGQVPGLYRLR 556
             S+NKF+GFIPD  G ++S+ +L+G   +G      L    +++ S + +  Q+   Y ++
Sbjct:   379 SSNKFVGFIPDG-GFNVSE-VLNGGGGQGTPSESVLPPQLFVSASVDTVSWQLDLGYDVQ 436

Query:   557 SLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVP 597
             +   +DLS N L G+IP  +  ++ L  LNLS N  +G +P
Sbjct:   437 ATTGIDLSGNELCGEIPEGLVDMKGLEYLNLSCNYLAGQIP 477

GO:0005886 "plasma membrane" evidence=IDA

GO:0009908 "flower development" evidence=IMP

GO:0048509 "regulation of meristem development" evidence=IMP

TAIR|locus:2043540 AT2G25790 [Arabidopsis thaliana (taxid:3702)]

 Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
 Identities = 209/649 (32%), Positives = 317/649 (48%)

Query:    39 LNLEDKASLLLFKSLVQDPTQKLSSWVGSNCTN---WTGVACNFQTGHVVSINLTDTSLS 95
             L+  +   LL FKS +QDP + LSSW  S+  +   W+GV CN     VVS++L+  ++S
Sbjct:    27 LHANELELLLSFKSSIQDPLKHLSSWSYSSTNDVCLWSGVVCN-NISRVVSLDLSGKNMS 85

Query:    96 GQVHPRLC-KLSFLEFLVLSSNAFTGRIS-TCFGGLS-GLKTLDLSYNKFVGVVPDAIMK 152
             GQ+      +L FL+ + LS+N  +G I    F   S  L+ L+LS N F G +P     
Sbjct:    86 GQILTAATFRLPFLQTINLSNNNLSGPIPHDIFTTSSPSLRYLNLSNNNFSGSIPRGF-- 143

Query:   153 LRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLE 212
             L NL  L L  N   G ++   +G FS NL  LD   N   G +P  L  L  L+ L L 
Sbjct:   144 LPNLYTLDLSNNMFTGEIYND-IGVFS-NLRVLDLGGNVLTGHVPGYLGNLSRLEFLTLA 201

Query:   213 KNNLTGNVH---DFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCI 269
              N LTG V       ++L  + LG N  SG +P       SL  L L  N++ G IP  +
Sbjct:   202 SNQLTGGVPVELGKMKNLKWIYLGYNNLSGEIPYQIGGLSSLNHLDLVYNNLSGPIPPSL 261

Query:   270 ASLQALTXXXXXXXXXXYEISPRLVFFEKXXXXXXXXXXXXGPLPSKIAQTTEKAGLVLL 329
               L+ L            +I P +   +             G +P  +AQ      L +L
Sbjct:   262 GDLKKLEYMFLYQNKLSGQIPPSIFSLQNLISLDFSDNSLSGEIPELVAQMQS---LEIL 318

Query:   330 DLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIP 389
              L  N  +G+IP  +T L  L+ L L +N   G IPA +G    L V+DLS N L+G +P
Sbjct:   319 HLFSNNLTGKIPEGVTSLPRLKVLQLWSNRFSGGIPANLGKHNNLTVLDLSTNNLTGKLP 378

Query:   390 LNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIV 449
               +     L  LI+ +N+L  +I P L    SL+ + + NN  SG++P     L+ +  +
Sbjct:   379 DTLCDSGHLTKLILFSNSLDSQIPPSLGMCQSLERVRLQNNGFSGKLPRGFTKLQLVNFL 438

Query:   450 DFSSNNLSGSLNDAITKWT--NLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGF 507
             D S+NNL G++N     W    L+   ++ NK  G LP++  S + ++ +D S NK  G 
Sbjct:   439 DLSNNNLQGNINT----WDMPQLEMLDLSVNKFFGELPDFSRS-KRLKKLDLSRNKISGV 493

Query:   508 IP-------DAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLY-RLRSLR 559
             +P       + + +DLS+N + G IP+ L   + L  L+LS N   G++P  +   + L 
Sbjct:   494 VPQGLMTFPEIMDLDLSENEITGVIPRELSSCKNLVNLDLSHNNFTGEIPSSFAEFQVLS 553

Query:   560 ALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPG-AFAGNPNLCLE 618
              LDLS N L+G+IP N+ +++ L  +N+S+N   G +P+   +      A  GN +LC E
Sbjct:   554 DLDLSCNQLSGEIPKNLGNIESLVQVNISHNLLHGSLPFTGAFLAINATAVEGNIDLCSE 613

Query:   619 SSHGECNRTSLPLVPGKTLREEMTEGPISIWAFCLSFFVSFYLGVVALF 667
             +S       +  L P K +R+  T+   S W    S F +F   +V+ F
Sbjct:   614 NS-------ASGLRPCKVVRKRSTK---SWWLIITSTFAAFLAVLVSGF 652

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:4515102753 AT1G73066 [Arabidopsis thaliana (taxid:3702)]

 Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
 Identities = 194/574 (33%), Positives = 278/574 (48%)

Query:    39 LNLEDKASLLLFKSLVQDPTQKLSSWV--GSNCT--NWTGVACNFQTGHVVSINLTDTSL 94
             LN +    L L K L + P +  S+W    S  T  NW G+ C+  +  V S+N T + +
Sbjct:    27 LNSDGLTLLSLRKHLDKVPPELTSTWKTNASEATPCNWFGIICD-DSKKVTSLNFTGSGV 85

Query:    95 SGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLR 154
             SGQ+ P + +L  LE L +SSN F+G I +  G  S L  +DLS N F G VPD +  L+
Sbjct:    86 SGQLGPEIGQLKSLEILDMSSNNFSGIIPSSLGNCSSLVYIDLSENSFSGKVPDTLGSLK 145

Query:   155 NLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKN 214
             +L +L L  N  L G  P  +    + L  L    N+  G IP+++   K L HL L  N
Sbjct:   146 SLADLYLYSN-SLTGELPKSLFRIPV-LNYLHVEHNNLTGLIPQNVGEAKELLHLRLFDN 203

Query:   215 NLTGNVHDFY---QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIAS 271
               TG + +       L +L L  N+  G+LP       SLT L + NNS+ G +      
Sbjct:   204 QFTGTIPESIGNCSKLEILYLHKNKLVGSLPASLNLLESLTDLFVANNSLRGTVQFGSTK 263

Query:   272 LQALTXXXXXXXXXXYEISPRLVFFEKXXXXXXXXXXXXGPLPSKIAQTTEKAGLVLLDL 331
              + L             + P L                 G +PS +        L +L+L
Sbjct:   264 CRNLVTLDLSYNEFEGGVPPELGNCSSLDALVIVSGNLSGTIPSSLGMLKN---LTILNL 320

Query:   332 SHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLN 391
             S NR SG IP ++    SL  L L++N L+G IP+ +G L  L+ ++L  N  SG IP+ 
Sbjct:   321 SENRLSGSIPAELGNCSSLNLLKLNDNQLVGGIPSALGKLRKLESLELFENRFSGEIPIE 380

Query:   392 IVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKS-LEIVD 450
             I     L  L+V  NNL+G++  E+  L +LKI+ + NN   G IP  L GL S LEI+D
Sbjct:   381 IWKIQSLTQLLVYRNNLTGKLPEEITKLKNLKIVTLFNNSFYGVIPPNL-GLNSNLEIID 439

Query:   451 FSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIP- 509
             F  NN +G +   +     L  F++  N+L G +P  +   + +       N   GF+P 
Sbjct:   440 FIGNNFTGEIPRNLCHGKMLTVFNLGSNRLHGKIPASVSQCKTLSRFILRENNLSGFLPK 499

Query:   510 -----DAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDL 563
                  D   +DL+ N   G IP+ L   + L  +NLS N L   +P  L  L++L  L+L
Sbjct:   500 FSKNQDLSFLDLNSNSFEGPIPRSLGSCRNLTTINLSRNKLTRNIPRELENLQNLSHLNL 559

Query:   564 SHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVP 597
               N L G +P   S+ +ELT L LS N FSGFVP
Sbjct:   560 GSNLLNGTVPSKFSNWKELTTLVLSGNRFSGFVP 593

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2005540 HAE "HAESA" [Arabidopsis thaliana (taxid:3702)]

 Score = 695 (249.7 bits), Expect = 2.8e-68, P = 2.8e-68
 Identities = 206/610 (33%), Positives = 298/610 (48%)

Query:    36 SLELNLEDKASLLLFKSLVQDPTQKLSSWVGSN----CTNWTGVACNFQTGHVVSINLTD 91
             SL LN +D   L   K  + DP Q LSSW  +N    C  W GV+C+  T +VVS++L+ 
Sbjct:    18 SLSLN-QDATILRQAKLGLSDPAQSLSSWSDNNDVTPC-KWLGVSCD-ATSNVVSVDLSS 74

Query:    92 TSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTC-FGGLSGLKTLDLSYNKFVGVVPDAI 150
               L G     LC L  L  L L +N+  G +S   F     L +LDLS N  VG +P ++
Sbjct:    75 FMLVGPFPSILCHLPSLHSLSLYNNSINGSLSADDFDTCHNLISLDLSENLLVGSIPKSL 134

Query:   151 -MKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHL 209
                L NL+ L + GN  L    P   G F   LE L+ + N   G IP SL  + +LK L
Sbjct:   135 PFNLPNLKFLEISGN-NLSDTIPSSFGEFR-KLESLNLAGNFLSGTIPASLGNVTTLKEL 192

Query:   210 DLEKN-----NLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGG 264
              L  N      +   + +  + L VL L      G +P   +   SL  L L  N + G 
Sbjct:   193 KLAYNLFSPSQIPSQLGNLTE-LQVLWLAGCNLVGPIPPSLSRLTSLVNLDLTFNQLTGS 251

Query:   265 IPTCIASLQALTXXXXXXXXXXYEISPRLVFFEKXXXXXXXXXXXXGPLPSKIAQTTEKA 324
             IP+ I  L+ +            E+   +                 G +P  +       
Sbjct:   252 IPSWITQLKTVEQIELFNNSFSGELPESMGNMTTLKRFDASMNKLTGKIPDNL----NLL 307

Query:   325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNML 384
              L  L+L  N   G +P  IT  K+L  L L NN L G +P+++G  + LQ +DLS+N  
Sbjct:   308 NLESLNLFENMLEGPLPESITRSKTLSELKLFNNRLTGVLPSQLGANSPLQYVDLSYNRF 367

Query:   385 SGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLK 444
             SG IP N+ G  +L  LI+ +N+ SGEI   L    SL  + +SNN++SG+IP    GL 
Sbjct:   368 SGEIPANVCGEGKLEYLILIDNSFSGEISNNLGKCKSLTRVRLSNNKLSGQIPHGFWGLP 427

Query:   445 SLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKF 504
              L +++ S N+ +GS+   I    NL    I++N+ SG++PN + S   I  +  + N F
Sbjct:   428 RLSLLELSDNSFTGSIPKTIIGAKNLSNLRISKNRFSGSIPNEIGSLNGIIEISGAENDF 487

Query:   505 MGFIPDAV-------GMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLR 556
              G IP+++        +DLS N L G IP+ L   + L  LNL+ N L G++P  +  L 
Sbjct:   488 SGEIPESLVKLKQLSRLDLSKNQLSGEIPRELRGWKNLNELNLANNHLSGEIPKEVGILP 547

Query:   557 SLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNLC 616
              L  LDLS N  +G+IP  + +L+ L +LNLSYN  SG +P     + +   F GNP LC
Sbjct:   548 VLNYLDLSSNQFSGEIPLELQNLK-LNVLNLSYNHLSGKIPPLYANKIYAHDFIGNPGLC 606

Query:   617 LESSHGECNR 626
             ++   G C +
Sbjct:   607 VDLD-GLCRK 615

GO:0004672 "protein kinase activity" evidence=IEA;IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0046777 "protein autophosphorylation" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2025545 AT1G08590 [Arabidopsis thaliana (taxid:3702)]

 Score = 680 (244.4 bits), Expect = 2.1e-66, P = 2.1e-66
 Identities = 199/604 (32%), Positives = 288/604 (47%)

Query:    34 SESLELNLEDKASLLLFKSLVQDPTQKLSSWVG-SNCT--------NWTGVACNFQTGHV 84
             SE+ + N E +  LL FKS + DP+  L  W    N T        +WTGV C+   G+V
Sbjct:    23 SETFQ-NSEQEI-LLAFKSDLFDPSNNLQDWKRPENATTFSELVHCHWTGVHCD-ANGYV 79

Query:    85 VSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVG 144
               + L++ +LSG V  ++     L+ L LS+NAF   +      L+ LK +D+S N F G
Sbjct:    80 AKLLLSNMNLSGNVSDQIQSFPSLQALDLSNNAFESSLPKSLSNLTSLKVIDVSVNSFFG 139

Query:   145 VVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLK 204
               P  +     L  +    N    G  P  +GN +  LE LDF    F G +P S   LK
Sbjct:   140 TFPYGLGMATGLTHVNASSN-NFSGFLPEDLGN-ATTLEVLDFRGGYFEGSVPSSFKNLK 197

Query:   205 SLKHLDLEKNNLTGNVHDFY---QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSV 261
             +LK L L  NN  G V        SL  + LG N F G +P        L  L L   ++
Sbjct:   198 NLKFLGLSGNNFGGKVPKVIGELSSLETIILGYNGFMGEIPEEFGKLTRLQYLDLAVGNL 257

Query:   262 VGGIPTCIASLQALTXXXXXXXXXXYEISPRLVFFEKXXXXXXXXXXXXGPLPSKIAQTT 321
              G IP+ +  L+ LT           ++   L                 G +P ++    
Sbjct:   258 TGQIPSSLGQLKQLTTVYLYQNRLTGKLPRELGGMTSLVFLDLSDNQITGEIPMEVG--- 314

Query:   322 EKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSH 381
             E   L LL+L  N+ +G IP KI EL +L+ L L  N L+G +P  +G  + L+ +D+S 
Sbjct:   315 ELKNLQLLNLMRNQLTGIIPSKIAELPNLEVLELWQNSLMGSLPVHLGKNSPLKWLDVSS 374

Query:   382 NMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLA 441
             N LSG IP  +     L  LI+ NN+ SG+I  E+ +  +L  + I  N ISG IP    
Sbjct:   375 NKLSGDIPSGLCYSRNLTKLILFNNSFSGQIPEEIFSCPTLVRVRIQKNHISGSIPAGSG 434

Query:   442 GLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFST 501
              L  L+ ++ + NNL+G + D I   T+L +  I+ N LS +L + +FS   +Q    S 
Sbjct:   435 DLPMLQHLELAKNNLTGKIPDDIALSTSLSFIDISFNHLS-SLSSSIFSSPNLQTFIASH 493

Query:   502 NKFMGFIPDAVG-------MDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVP-GLY 553
             N F G IP+ +        +DLS N   G IP+ +   + L  LNL  N L G++P  L 
Sbjct:   494 NNFAGKIPNQIQDRPSLSVLDLSFNHFSGGIPERIASFEKLVSLNLKSNQLVGEIPKALA 553

Query:   554 RLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKF-PGAFAGN 612
              +  L  LDLS+NSLTG IP ++ +   L +LN+S+N   G +P    +    P    GN
Sbjct:   554 GMHMLAVLDLSNNSLTGNIPADLGASPTLEMLNVSFNKLDGPIPSNMLFAAIDPKDLVGN 613

Query:   613 PNLC 616
               LC
Sbjct:   614 NGLC 617

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010067 "procambium histogenesis" evidence=ISS

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2160791 AT5G63930 [Arabidopsis thaliana (taxid:3702)]

 Score = 682 (245.1 bits), Expect = 2.1e-66, P = 2.1e-66
 Identities = 190/579 (32%), Positives = 290/579 (50%)

Query:    34 SESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSNCT--NWTGVAC-NFQTG-HVVSINL 89
             SE+  LNLE +  LL  KS   D  Q L +W  ++     WTGV C N+ +   V+S+NL
Sbjct:    22 SETTGLNLEGQY-LLEIKSKFVDAKQNLRNWNSNDSVPCGWTGVMCSNYSSDPEVLSLNL 80

Query:    90 TDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDA 149
             +   LSG++ P +  L  L+ L LS N  +G+I    G  S L+ L L+ N+F G +P  
Sbjct:    81 SSMVLSGKLSPSIGGLVHLKQLDLSYNGLSGKIPKEIGNCSSLEILKLNNNQFDGEIPVE 140

Query:   150 IMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHL 209
             I KL +L  LI+  N  + G  P  +GN  ++L +L    N+  G++P S+  LK L   
Sbjct:   141 IGKLVSLENLIIYNN-RISGSLPVEIGNL-LSLSQLVTYSNNISGQLPRSIGNLKRLTSF 198

Query:   210 DLEKNNLTGNVHDFY---QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIP 266
                +N ++G++       +SL++L L  N+ SG LP        L+ + L  N   G IP
Sbjct:   199 RAGQNMISGSLPSEIGGCESLVMLGLAQNQLSGELPKEIGMLKKLSQVILWENEFSGFIP 258

Query:   267 TCIASLQALTXXXXXXXXXXYEISPRLVFFEKXXXXXXXXXXXXGPLPSKIAQTTEKAGL 326
               I++  +L             I   L   +             G +P +I   +     
Sbjct:   259 REISNCTSLETLALYKNQLVGPIPKELGDLQSLEFLYLYRNGLNGTIPREIGNLSYA--- 315

Query:   327 VLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSG 386
             + +D S N  +GEIPL++  ++ L+ L+L  N L G IP  +  L  L  +DLS N L+G
Sbjct:   316 IEIDFSENALTGEIPLELGNIEGLELLYLFENQLTGTIPVELSTLKNLSKLDLSINALTG 375

Query:   387 SIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSL 446
              IPL       L  L +  N+LSG I P+L     L +LD+S+N +SG IP  L    ++
Sbjct:   376 PIPLGFQYLRGLFMLQLFQNSLSGTIPPKLGWYSDLWVLDMSDNHLSGRIPSYLCLHSNM 435

Query:   447 EIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMG 506
              I++  +NNLSG++   IT    L    +ARN L G  P+ L     +  ++   N+F G
Sbjct:   436 IILNLGTNNLSGNIPTGITTCKTLVQLRLARNNLVGRFPSNLCKQVNVTAIELGQNRFRG 495

Query:   507 FIPDAVG-------MDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSL 558
              IP  VG       + L+DN   G +P+ +  L  L  LN+S N L G+VP  ++  + L
Sbjct:   496 SIPREVGNCSALQRLQLADNGFTGELPREIGMLSQLGTLNISSNKLTGEVPSEIFNCKML 555

Query:   559 RALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVP 597
             + LD+  N+ +G +P  + SL +L LL LS N+ SG +P
Sbjct:   556 QRLDMCCNNFSGTLPSEVGSLYQLELLKLSNNNLSGTIP 594

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2169965 BAM1 "BARELY ANY MERISTEM 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 675 (242.7 bits), Expect = 5.8e-66, P = 5.8e-66
 Identities = 204/593 (34%), Positives = 281/593 (47%)

Query:    42 EDKASLLLFKSLV---QDPTQKLSSW-VGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQ 97
             E +A L L  SL     D    LSSW V ++   W GV C+    HV S++L+  +LSG 
Sbjct:    25 EFRALLSLKTSLTGAGDDKNSPLSSWKVSTSFCTWIGVTCDVSRRHVTSLDLSGLNLSGT 84

Query:    98 VHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMK-LRNL 156
             + P +  L  L+ L L+ N  +G I      LSGL+ L+LS N F G  PD I   L NL
Sbjct:    85 LSPDVSHLRLLQNLSLAENLISGPIPPEISSLSGLRHLNLSNNVFNGSFPDEISSGLVNL 144

Query:   157 RELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNL 216
             R L +  N  L G  P  V N +  L  L    N F G+IP S      +++L +  N L
Sbjct:   145 RVLDVYNN-NLTGDLPVSVTNLTQ-LRHLHLGGNYFAGKIPPSYGSWPVIEYLAVSGNEL 202

Query:   217 TGNVHDFYQSLLVLN---LGS-NRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASL 272
              G +     +L  L    +G  N F   LP    +   L      N  + G IP  I  L
Sbjct:   203 VGKIPPEIGNLTTLRELYIGYYNAFEDGLPPEIGNLSELVRFDGANCGLTGEIPPEIGKL 262

Query:   273 QALTXXXXXXXXXXYEISPRLVFFEKXXXXXXXXXXXXGPLPSKIAQTTEKAGLVLLDLS 332
             Q L             ++  L                 G +P+  A   E   L LL+L 
Sbjct:   263 QKLDTLFLQVNVFSGPLTWELGTLSSLKSMDLSNNMFTGEIPASFA---ELKNLTLLNLF 319

Query:   333 HNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNI 392
              N+  GEIP  I +L  L+ L L  N   G IP ++G    L ++DLS N L+G++P N+
Sbjct:   320 RNKLHGEIPEFIGDLPELEVLQLWENNFTGSIPQKLGENGKLNLVDLSSNKLTGTLPPNM 379

Query:   393 VGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFS 452
                 +L  LI   N L G I   L   +SL  + +  N ++G IP  L GL  L  V+  
Sbjct:   380 CSGNKLETLITLGNFLFGSIPDSLGKCESLTRIRMGENFLNGSIPKGLFGLPKLTQVELQ 439

Query:   453 SNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAV 512
              N LSG L  A     NL   S++ N+LSG LP  + +F  +Q +    NKF G IP  V
Sbjct:   440 DNYLSGELPVAGGVSVNLGQISLSNNQLSGPLPPAIGNFTGVQKLLLDGNKFQGPIPSEV 499

Query:   513 G-------MDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLS 564
             G       +D S NL  G I   + + + L +++LS N L G++P  +  ++ L  L+LS
Sbjct:   500 GKLQQLSKIDFSHNLFSGRIAPEISRCKLLTFVDLSRNELSGEIPNEITAMKILNYLNLS 559

Query:   565 HNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFP-GAFAGNPNLC 616
              N L G IPG+ISS+Q LT L+ SYN+ SG VP    +  F   +F GNP+LC
Sbjct:   560 RNHLVGSIPGSISSMQSLTSLDFSYNNLSGLVPGTGQFSYFNYTSFLGNPDLC 612

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010075 "regulation of meristem growth" evidence=IGI;RCA

GO:0048229 "gametophyte development" evidence=IGI

GO:0048437 "floral organ development" evidence=IGI

GO:0010480 "microsporocyte differentiation" evidence=IGI

GO:0048653 "anther development" evidence=IGI;RCA

GO:0009934 "regulation of meristem structural organization" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0043621 "protein self-association" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2139885 AT4G28650 [Arabidopsis thaliana (taxid:3702)]

 Score = 672 (241.6 bits), Expect = 1.4e-65, P = 1.4e-65
 Identities = 193/593 (32%), Positives = 285/593 (48%)

Query:    40 NLEDKASLLLFKSLVQDPTQKLSSWVGSNCT---NWTGVACNFQTGHVVSINLTDTSLSG 96
             N+ + + LL  KS + DP   L  W  S+ +   NWTGV CN   G+V  ++L   +L+G
Sbjct:    27 NVNELSVLLSVKSTLVDPLNFLKDWKLSDTSDHCNWTGVRCN-SNGNVEKLDLAGMNLTG 85

Query:    97 QVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNL 156
             ++   + +LS L    +S N F   +      +  LK++D+S N F G +     +   L
Sbjct:    86 KISDSISQLSSLVSFNISCNGFESLLPK---SIPPLKSIDISQNSFSGSLFLFSNESLGL 142

Query:   157 RELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNL 216
               L   GN  L G     +GN  ++LE LD   N F G +P S   L+ L+ L L  NNL
Sbjct:   143 VHLNASGN-NLSGNLTEDLGNL-VSLEVLDLRGNFFQGSLPSSFKNLQKLRFLGLSGNNL 200

Query:   217 TGNVHDFYQSLLVLN---LGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQ 273
             TG +      L  L    LG N F G +P    +  SL  L L    + G IP+ +  L+
Sbjct:   201 TGELPSVLGQLPSLETAILGYNEFKGPIPPEFGNINSLKYLDLAIGKLSGEIPSELGKLK 260

Query:   274 ALTXXXXXXXXXXYEISPRLVFFEKXXXXXXXXXXXXGPLPSKIAQTTEKAGLVLLDLSH 333
             +L             I   +                 G +P +I   T+   L LL+L  
Sbjct:   261 SLETLLLYENNFTGTIPREIGSITTLKVLDFSDNALTGEIPMEI---TKLKNLQLLNLMR 317

Query:   334 NRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIV 393
             N+ SG IP  I+ L  LQ L L NN L GE+P+ +G  + LQ +D+S N  SG IP  + 
Sbjct:   318 NKLSGSIPPAISSLAQLQVLELWNNTLSGELPSDLGKNSPLQWLDVSSNSFSGEIPSTLC 377

Query:   394 GCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSS 453
                 L  LI+ NN  +G+I   L    SL  + + NN ++G IP+    L+ L+ ++ + 
Sbjct:   378 NKGNLTKLILFNNTFTGQIPATLSTCQSLVRVRMQNNLLNGSIPIGFGKLEKLQRLELAG 437

Query:   454 NNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAV- 512
             N LSG +   I+   +L +   +RN++  +LP+ + S   +Q    + N   G +PD   
Sbjct:   438 NRLSGGIPGDISDSVSLSFIDFSRNQIRSSLPSTILSIHNLQAFLVADNFISGEVPDQFQ 497

Query:   513 ------GMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSH 565
                    +DLS N L GTIP  +   + L  LNL  N L G++P  +  + +L  LDLS+
Sbjct:   498 DCPSLSNLDLSSNTLTGTIPSSIASCEKLVSLNLRNNNLTGEIPRQITTMSALAVLDLSN 557

Query:   566 NSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKF--PGAFAGNPNLC 616
             NSLTG +P +I +   L LLN+SYN  +G VP   G+ K   P    GN  LC
Sbjct:   558 NSLTGVLPESIGTSPALELLNVSYNKLTGPVPIN-GFLKTINPDDLRGNSGLC 609

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010067 "procambium histogenesis" evidence=ISS

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2122239 AT4G36180 [Arabidopsis thaliana (taxid:3702)]

 Score = 673 (242.0 bits), Expect = 2.4e-65, P = 2.4e-65
 Identities = 192/568 (33%), Positives = 271/568 (47%)

Query:    46 SLLLFKSLVQDPTQKLSSWVGSN----CTNWTGVACNFQTGH-VVSINLTDTSLSGQVHP 100
             +L  FK  + DP   L+SW  S     C +W GV C   T H V  I L    LSG++  
Sbjct:    31 ALTAFKLNLHDPLGALTSWDPSTPAAPC-DWRGVGC---TNHRVTEIRLPRLQLSGRISD 86

Query:   101 RLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELI 160
             R+  L  L  L L SN+F G I T     + L ++ L YN   G +P A+  L +L    
Sbjct:    87 RISGLRMLRKLSLRSNSFNGTIPTSLAYCTRLLSVFLQYNSLSGKLPPAMRNLTSLEVFN 146

Query:   161 LKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNV 220
             + GN  L G  P  VG    +L+ LD S N+F G+IP  L  L  L+ L+L  N LTG +
Sbjct:   147 VAGN-RLSGEIP--VG-LPSSLQFLDISSNTFSGQIPSGLANLTQLQLLNLSYNQLTGEI 202

Query:   221 HDFY---QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTX 277
                    QSL  L L  N   GTLP   ++  SL  L    N + G IP    +L  L  
Sbjct:   203 PASLGNLQSLQYLWLDFNLLQGTLPSAISNCSSLVHLSASENEIGGVIPAAYGALPKLEV 262

Query:   278 XXXXXXXXXYEISPRLVFFEKXXXXXXXXXXXXGPLPSKIAQTTEKAGLVLLDLSHNRFS 337
                        + P  +F                 +         + GL +LDL  NR S
Sbjct:   263 LSLSNNNFSGTV-PFSLFCNTSLTIVQLGFNAFSDIVRPETTANCRTGLQVLDLQENRIS 321

Query:   338 GEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQ 397
             G  PL +T + SL+ L +S NL  GEIP  IGNL  L+ + L++N L+G IP+ I  C  
Sbjct:   322 GRFPLWLTNILSLKNLDVSGNLFSGEIPPDIGNLKRLEELKLANNSLTGEIPVEIKQCGS 381

Query:   398 LLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLS 457
             L  L    N+L G+I   L  + +LK+L +  N  SG +P ++  L+ LE ++   NNL+
Sbjct:   382 LDVLDFEGNSLKGQIPEFLGYMKALKVLSLGRNSFSGYVPSSMVNLQQLERLNLGENNLN 441

Query:   458 GSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVG---- 513
             GS    +   T+L    ++ N+ SG +P  + +   +  ++ S N F G IP +VG    
Sbjct:   442 GSFPVELMALTSLSELDLSGNRFSGAVPVSISNLSNLSFLNLSGNGFSGEIPASVGNLFK 501

Query:   514 ---MDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVP-GLYRLRSLRALDLSHNSLT 569
                +DLS   + G +P  L  L  ++ + L  N   G VP G   L SLR ++LS NS +
Sbjct:   502 LTALDLSKQNMSGEVPVELSGLPNVQVIALQGNNFSGVVPEGFSSLVSLRYVNLSSNSFS 561

Query:   570 GQIPGNISSLQELTLLNLSYNSFSGFVP 597
             G+IP     L+ L  L+LS N  SG +P
Sbjct:   562 GEIPQTFGFLRLLVSLSLSDNHISGSIP 589

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O80809	CLV2_ARATH	No assigned EC number	0.6127	0.9456	0.8944	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00870064 hypothetical protein (725 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	681
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-92
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-09
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-07
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	3e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	4e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
PLN03210	1153	PLN03210, PLN03210, Resistant to P	0.004
COG5238	388	COG5238, RNA1, Ran GTPase-activating protein (RanG	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  306 bits (786), Expect = 3e-92
 Identities = 208/591 (35%), Positives = 296/591 (50%), Gaps = 49/591 (8%)

Query: 19  MLPLLLFLLLLCSNPSESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSN-CTNWTGVAC 77
            L  +LF L L  +   + EL L     LL FKS + DP + LS+W  S     W G+ C
Sbjct: 11  YLIFMLFFLFLNFSMLHAEELEL-----LLSFKSSINDPLKYLSNWNSSADVCLWQGITC 65

Query: 78  NFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRI-STCFGGLSGLKTLD 136
           N  +  VVSI+L+  ++SG++   + +L +++ + LS+N  +G I    F   S L+ L+
Sbjct: 66  N-NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLN 124

Query: 137 LSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEI 196
           LS N F G +P                                 NLE LD S N   GEI
Sbjct: 125 LSNNNFTGSIP----------------------------RGSIPNLETLDLSNNMLSGEI 156

Query: 197 PESLYYLKSLKHLDLEKNNLTGNVHDF---YQSLLVLNLGSNRFSGTLPCFAASAMSLTV 253
           P  +    SLK LDL  N L G + +      SL  L L SN+  G +P       SL  
Sbjct: 157 PNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216

Query: 254 LKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPL 313
           + L  N++ G IP  I  L +L HL+L +N+L   I   L   + L  L L  N LSGP+
Sbjct: 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI 276

Query: 314 PSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTY 373
           P  I    +   L+ LDLS N  SGEIP  + +L++L+ L L +N   G+IP  + +L  
Sbjct: 277 PPSIFSLQK---LISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPR 333

Query: 374 LQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQIS 433
           LQV+ L  N  SG IP N+     L  L ++ NNL+GEI   L +  +L  L + +N + 
Sbjct: 334 LQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLE 393

Query: 434 GEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQA 493
           GEIP +L   +SL  V    N+ SG L    TK   + +  I+ N L G + +  +   +
Sbjct: 394 GEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPS 453

Query: 494 IQMMDFSTNKFMGFIPDAVG------MDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDG 547
           +QM+  + NKF G +PD+ G      +DLS N   G +P+ L  L  L  L LS N L G
Sbjct: 454 LQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSG 513

Query: 548 QVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVP 597
           ++P  L   + L +LDLSHN L+GQIP + S +  L+ L+LS N  SG +P
Sbjct: 514 EIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP 564

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 77.5 bits (191), Expect = 9e-15
 Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 24/115 (20%)

Query: 329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSI 388
           L L +    G IP  I++L+ LQ++ LS N + G IP  +G++T L+V+DLS+N  +GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 389 PLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGL 443
           P                          L  L SL+IL+++ N +SG +P  L G 
Sbjct: 483 P------------------------ESLGQLTSLRILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 77.2 bits (190), Expect = 1e-14
 Identities = 47/143 (32%), Positives = 71/143 (49%), Gaps = 11/143 (7%)

Query: 64  WVGSNCTN----WTGVACNF--QTGH--VVSINLTDTSLSGQVHPRLCKLSFLEFLVLSS 115
           W G  C      W+G  C F    G   +  + L +  L G +   + KL  L+ + LS 
Sbjct: 392 WNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSG 451

Query: 116 NAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWV 175
           N+  G I    G ++ L+ LDLSYN F G +P+++ +L +LR L L GN  L G  P  +
Sbjct: 452 NSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN-SLSGRVPAAL 510

Query: 176 GNFSMNLEKLDFSFNS-FCGEIP 197
           G   ++    +F+ N+  CG IP
Sbjct: 511 GGRLLHRASFNFTDNAGLCG-IP 532

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 76.8 bits (189), Expect = 2e-14
 Identities = 43/108 (39%), Positives = 59/108 (54%), Gaps = 4/108 (3%)

Query: 513 GMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVP-GLYRLRSLRALDLSHNSLTGQ 571
           G+ L +  L G IP  + +L+ L+ +NLS N + G +P  L  + SL  LDLS+NS  G 
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 572 IPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGA---FAGNPNLC 616
           IP ++  L  L +LNL+ NS SG VP   G +    A   F  N  LC
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 67.9 bits (166), Expect = 8e-12
 Identities = 38/116 (32%), Positives = 54/116 (46%), Gaps = 27/116 (23%)

Query: 254 LKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPL 313
           L LDN  + G IP  I+ L+ L  +NLS N +   I P             S   ++   
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP-------------SLGSITS-- 467

Query: 314 PSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIG 369
                       L +LDLS+N F+G IP  + +L SL+ L L+ N L G +PA +G
Sbjct: 468 ------------LEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.8 bits (163), Expect = 2e-11
 Identities = 29/86 (33%), Positives = 53/86 (61%)

Query: 400 ALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGS 459
            L ++N  L G I  ++  L  L+ +++S N I G IP +L  + SLE++D S N+ +GS
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 460 LNDAITKWTNLKYFSIARNKLSGNLP 485
           + +++ + T+L+  ++  N LSG +P
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.5 bits (152), Expect = 5e-10
 Identities = 38/86 (44%), Positives = 53/86 (61%), Gaps = 2/86 (2%)

Query: 135 LDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCG 194
           L L      G +P+ I KLR+L+ + L GN  + G  P  +G+ + +LE LD S+NSF G
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGN-SIRGNIPPSLGSIT-SLEVLDLSYNSFNG 480

Query: 195 EIPESLYYLKSLKHLDLEKNNLTGNV 220
            IPESL  L SL+ L+L  N+L+G V
Sbjct: 481 SIPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 58.3 bits (141), Expect = 8e-09
 Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 9/104 (8%)

Query: 480 LSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVG-------MDLSDNLLHGTIPKGLFQL 532
           L G +PN +   + +Q ++ S N   G IP ++G       +DLS N  +G+IP+ L QL
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489

Query: 533 QGLEYLNLSFNFLDGQVPGLYRLRSLR--ALDLSHNSLTGQIPG 574
             L  LNL+ N L G+VP     R L   + + + N+    IPG
Sbjct: 490 TSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG 533

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 53.8 bits (129), Expect = 2e-07
 Identities = 67/241 (27%), Positives = 113/241 (46%), Gaps = 24/241 (9%)

Query: 337 SGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCF 396
           S +    +  L  L +L L+ N L   I   +  LT L  +DL +N ++   PL  +   
Sbjct: 82  SLDGSENLLNLLPLPSLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNITDIPPLIGLLKS 140

Query: 397 QLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNL 456
            L  L +++N +   +   L  L +LK LD+S N +S ++P  L+ L +L  +D S N +
Sbjct: 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKI 198

Query: 457 SGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDL 516
           S  L   I   + L+   ++ N +             I+++   +N       +  G++L
Sbjct: 199 S-DLPPEIELLSALEELDLSNNSI-------------IELLSSLSNL-----KNLSGLEL 239

Query: 517 SDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNI 576
           S+N L   +P+ +  L  LE L+LS N +   +  L  L +LR LDLS NSL+  +P   
Sbjct: 240 SNNKL-EDLPESIGNLSNLETLDLSNNQI-SSISSLGSLTNLRELDLSGNSLSNALPLIA 297

Query: 577 S 577
            
Sbjct: 298 L 298

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 53.4 bits (128), Expect = 2e-07
 Identities = 82/297 (27%), Positives = 134/297 (45%), Gaps = 16/297 (5%)

Query: 195 EIPESLYYLKSLKHLDLEKNNLTGNV--HDFYQSLLVLNLGSNRFSGTLPCFAASAMSLT 252
           +  E+L  L  L  LDL  N L  N+       +L  L+L +N  +   P       +L 
Sbjct: 84  DGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLK 143

Query: 253 VLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGP 312
            L L +N +   +P+ + +L  L +L+LS N L+ ++   L     L  LDLS N +S  
Sbjct: 144 ELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-D 200

Query: 313 LPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLT 372
           LP +I      + L  LDLS+N    E+   ++ LK+L  L LSNN L  ++P  IGNL+
Sbjct: 201 LPPEIE---LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLS 255

Query: 373 YLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQI 432
            L+ +DLS+N +S    ++ +G    L  +  + N      P +  L  L  L ++    
Sbjct: 256 NLETLDLSNNQISS---ISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLT 312

Query: 433 SGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLF 489
              + L    L S+ + +   +N   S  +A++   +L       N L  +  N   
Sbjct: 313 LKALEL---KLNSILLNNNILSNGETSSPEALSILESLNNLWTLDNALDESNLNRYI 366

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 47.5 bits (114), Expect = 3e-07
 Identities = 25/58 (43%), Positives = 30/58 (51%)

Query: 108 LEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNP 165
           L+ L LS+N  T      F GL  LK LDLS N    + P+A   L +LR L L GN 
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Length = 60

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 46.6 bits (111), Expect = 3e-07
 Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 3/40 (7%)

Query: 42 EDKASLLLFK-SLVQDPTQKLSSWVGS--NCTNWTGVACN 78
          +D+ +LL FK SL  DP+  LSSW  S  +  +WTGV C+
Sbjct: 3  DDRDALLAFKSSLNGDPSGALSSWNPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.2 bits (120), Expect = 3e-06
 Identities = 28/88 (31%), Positives = 44/88 (50%)

Query: 230 LNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEI 289
           L L +    G +P   +    L  + L  NS+ G IP  + S+ +L  L+LS+N  N  I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 290 SPRLVFFEKLLLLDLSFNDLSGPLPSKI 317
              L     L +L+L+ N LSG +P+ +
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 50.0 bits (119), Expect = 3e-06
 Identities = 86/324 (26%), Positives = 142/324 (43%), Gaps = 63/324 (19%)

Query: 129 LSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNP--ELGGVFPGWVGNFSMNLEKLD 186
           L  L +LDL+ N+        +++L NL  L L  N   ++    P  +G    NL++LD
Sbjct: 92  LLPLPSLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDI----PPLIGLLKSNLKELD 146

Query: 187 FSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAA 246
            S N     +P  L  L +LK+LDL  N+L+                             
Sbjct: 147 LSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS----------------------------- 176

Query: 247 SAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSF 306
                             +P  +++L  L +L+LS N ++ ++ P +     L  LDLS 
Sbjct: 177 -----------------DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSN 218

Query: 307 NDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPA 366
           N +   L S ++       L  L+LS+N+   ++P  I  L +L+ L LSNN  I  I +
Sbjct: 219 NSII-ELLSSLSNLK---NLSGLELSNNKLE-DLPESIGNLSNLETLDLSNN-QISSISS 272

Query: 367 RIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILD 426
            +G+LT L+ +DLS N LS ++PL I     LL L++N       ++ +L+++     + 
Sbjct: 273 -LGSLTNLRELDLSGNSLSNALPL-IALLLLLLELLLNLLLTLKALELKLNSILLNNNIL 330

Query: 427 ISNNQISGEIPLTLAGLKSLEIVD 450
            +    S E    L  L +L  +D
Sbjct: 331 SNGETSSPEALSILESLNNLWTLD 354

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 57/232 (24%), Positives = 91/232 (39%), Gaps = 47/232 (20%)

Query: 251 LTVLKLDNNSVVGG----IPTCIASLQALTHLNLSHNHLNYEISPRLV-----FFEK--- 298
           L VL+L+ N++       + + +    +L  L LS N       PR +        K   
Sbjct: 25  LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNET--GRIPRGLQSLLQGLTKGCG 82

Query: 299 LLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEI-PLKITELKSLQ----AL 353
           L  LDLS N L       +      + L  L L++N        L    LK L      L
Sbjct: 83  LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKL 142

Query: 354 FLSNNLLIGEIPARIGNL----TYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLS 409
            L  N L G     +         L+ ++L++N +  +         + LA         
Sbjct: 143 VLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA-------GIRALA--------- 186

Query: 410 GEIQPELDALDSLKILDISNNQISGE----IPLTLAGLKSLEIVDFSSNNLS 457
                 L A  +L++LD++NN ++ E    +  TLA LKSLE+++   NNL+
Sbjct: 187 ----EGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 27/56 (48%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 515 DLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSL 568
           DLS+N L   IP G F+ L  L+ L+LS N L    P     L SLR+LDLS N+L
Sbjct: 6   DLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 534 GLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSF 592
            L+ L+LS N L     G    L +L+ LDLS N+LT   P   S L  L  L+LS N+ 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 44.9 bits (106), Expect = 2e-04
 Identities = 92/363 (25%), Positives = 147/363 (40%), Gaps = 54/363 (14%)

Query: 100 PRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLREL 159
           P L   + LE L LS  +    + +    L+ L+ LD+S  + + ++P  I  L++L  L
Sbjct: 651 PDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRL 709

Query: 160 ILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGN 219
            L G   L   FP    + S N+  LD    +   E P +L  L++L  L L +   +  
Sbjct: 710 NLSGCSRLK-SFP----DISTNISWLDLDETAI-EEFPSNLR-LENLDELILCEMK-SEK 761

Query: 220 VHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLN 279
           + +  Q L              P     + SLT L L +   +  +P+ I +L  L HL 
Sbjct: 762 LWERVQPLT-------------PLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLE 808

Query: 280 LSHNHLNYEISPRLVFFEKLLLLDLS-------FNDLSGPLPSKIAQTT---------EK 323
           +  N +N E  P  +  E L  LDLS       F D+S  +       T         EK
Sbjct: 809 IE-NCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEK 867

Query: 324 -AGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHN 382
            + L  LD++       + L I++LK L+ +  S+   + E              D  H+
Sbjct: 868 FSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHS 927

Query: 383 MLSGSIPLNIVGCFQL--LALIVNNNN-----LSGEIQPEL-------DALDSLKILDIS 428
            L  ++ +N + CF L   AL+   +      LSGE  P          +L ++ +L IS
Sbjct: 928 KLPSTVCINFINCFNLDQEALLQQQSIFKQLILSGEEVPSYFTHRTTGASLTNIPLLHIS 987

Query: 429 NNQ 431
             Q
Sbjct: 988 PCQ 990

syringae 6; Provisional. Length = 1153

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.7 bits (103), Expect = 3e-04
 Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 3/76 (3%)

Query: 194 GEIPESLYYLKSLKHLDLEKNNLTGNVHDFY---QSLLVLNLGSNRFSGTLPCFAASAMS 250
           G IP  +  L+ L+ ++L  N++ GN+        SL VL+L  N F+G++P       S
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 251 LTVLKLDNNSVVGGIP 266
           L +L L+ NS+ G +P
Sbjct: 492 LRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 66/244 (27%), Positives = 102/244 (41%), Gaps = 39/244 (15%)

Query: 132 LKTLDLSYN------KFVGVVPDAIMKLRNLRELILKGN---PELGGVFPGWVGNFSMNL 182
           LK L LS N      + +  +   + K   L+EL L  N   P+  GV    + + S  L
Sbjct: 53  LKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSS--L 110

Query: 183 EKLDFSFNSFCGE----IPESLYYLK-SLKHLDLEKNNLTG-------NVHDFYQSLLVL 230
           ++L  + N         + + L  L  +L+ L L +N L G             + L  L
Sbjct: 111 QELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKEL 170

Query: 231 NLGSNRFSG-----TLPCFAASAMSLTVLKLDNNSV----VGGIPTCIASLQALTHLNLS 281
           NL +N               A+  +L VL L+NN +       +   +ASL++L  LNL 
Sbjct: 171 NLANNGIGDAGIRALAEGLKANC-NLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLG 229

Query: 282 HNHLN----YEISPRLVFFE-KLLLLDLSFNDLSGPLPSKIAQT-TEKAGLVLLDLSHNR 335
            N+L       ++  L+     LL L LS ND++      +A+   EK  L+ LDL  N+
Sbjct: 230 DNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289

Query: 336 FSGE 339
           F  E
Sbjct: 290 FGEE 293

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.5 bits (100), Expect = 7e-04
 Identities = 24/65 (36%), Positives = 32/65 (49%)

Query: 225 QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNH 284
           + L  +NL  N   G +P    S  SL VL L  NS  G IP  +  L +L  LNL+ N 
Sbjct: 442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501

Query: 285 LNYEI 289
           L+  +
Sbjct: 502 LSGRV 506

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 19/60 (31%), Positives = 35/60 (58%)

Query: 421 SLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKL 480
           +LK LD+SNN+++        GL +L+++D S NNL+    +A +   +L+   ++ N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 40.2 bits (94), Expect = 0.004
 Identities = 85/329 (25%), Positives = 138/329 (41%), Gaps = 58/329 (17%)

Query: 148 DAIMKLRNLRELILKGNPELGGVFPGWVGNFSM--NLEKLDFSFNSFCGEIPESLYYLKS 205
           D +  L  LR + L+G+  L  +      + SM  NLE L  S  S   E+P S+ YL  
Sbjct: 628 DGVHSLTGLRNIDLRGSKNLKEI-----PDLSMATNLETLKLSDCSSLVELPSSIQYLNK 682

Query: 206 LKHLDLEK----NNLTGNVHDFYQSLLVLNL-GSNRFSGTLPCFAASAMSLTVLKLDNNS 260
           L+ LD+ +      L   ++   +SL  LNL G +R    L  F   + +++ L LD   
Sbjct: 683 LEDLDMSRCENLEILPTGIN--LKSLYRLNLSGCSR----LKSFPDISTNISWLDLDE-- 734

Query: 261 VVGGIPTCIASLQALTHL-NLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQ 319
                 T I    +   L NL    L    S +L    + L           PL + ++ 
Sbjct: 735 ------TAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLT----------PLMTMLSP 778

Query: 320 TTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDL 379
           +  +     L LS      E+P  I  L  L+ L + N + +  +P  I NL  L+ +DL
Sbjct: 779 SLTR-----LFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDL 832

Query: 380 SHNMLSGSIPLNIVGCFQLLALIVNNNNLSG----EIQPELDALDSLKILDISNNQISGE 435
           S          + +  F  ++  +++ NLS     E+   ++   +L  LD++       
Sbjct: 833 SG--------CSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQR 884

Query: 436 IPLTLAGLKSLEIVDFSSNNLSGSLNDAI 464
           + L ++ LK LE VDFS     G+L +A 
Sbjct: 885 VSLNISKLKHLETVDFSD---CGALTEAS 910

syringae 6; Provisional. Length = 1153

>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

 Score = 39.9 bits (93), Expect = 0.004
 Identities = 65/246 (26%), Positives = 98/246 (39%), Gaps = 39/246 (15%)

Query: 254 LKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRL--VFFEKLLLLDLSFNDL-S 310
           LKL+    V G+   +  +  L  ++LS N +  E    L  V      L  ++F+D  +
Sbjct: 11  LKLETKEDVKGVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFT 70

Query: 311 GPLPSKIAQTTEKAGLVLL--------DLSHNRFSGEIPLKITELKS----LQALFLSNN 358
           G    ++          LL        DLS N F  E P ++ +L S    L  L L+NN
Sbjct: 71  GRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN 130

Query: 359 LLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDA 418
            L      RIG   +     L++N  +   P       +L  +I   N L    +    A
Sbjct: 131 GLGPIAGGRIGKALF----HLAYNKKAADKP-------KLEVVICGRNRLENGSKELSAA 179

Query: 419 L----DSLKILDISNNQISGE-----IPLTLAGLKSLEIVDFSSNNLS--GS--LNDAIT 465
           L    ++LK + I  N I  E       L L    SLE++D   N  +  GS  L DA+ 
Sbjct: 180 LLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALC 239

Query: 466 KWTNLK 471
           +W  L+
Sbjct: 240 EWNLLR 245

Length = 388

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	681
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.98
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.85
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.85
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.85
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.83
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.79
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.74
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.74
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.65
PLN03150	623	hypothetical protein; Provisional	99.65
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.63
PLN03150	623	hypothetical protein; Provisional	99.58
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.23
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.16
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.11
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.1
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.04
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.97
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.97
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.96
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.93
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.89
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.88
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.87
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.81
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.78
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.77
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.74
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.72
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.6
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.4
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.36
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.31
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.23
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.19
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.17
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.02
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.01
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.95
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.84
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.84
PRK15386	426	type III secretion protein GogB; Provisional	97.7
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.66
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.59
PRK15386	426	type III secretion protein GogB; Provisional	97.59
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.24
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.2
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.12
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.11
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.03
KOG4341	483	consensus F-box protein containing LRR [General fu	96.82
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.76
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.72
KOG4341	483	consensus F-box protein containing LRR [General fu	96.61
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.66
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.23
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.21
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.18
KOG2123	388	consensus Uncharacterized conserved protein [Funct	93.89
KOG1947	482	consensus Leucine rich repeat proteins, some prote	93.68
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.15
KOG1947	482	consensus Leucine rich repeat proteins, some prote	92.73
KOG4308	478	consensus LRR-containing protein [Function unknown	92.51
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	90.48
KOG4308	478	consensus LRR-containing protein [Function unknown	90.03
KOG3864	221	consensus Uncharacterized conserved protein [Funct	90.01
KOG0473	326	consensus Leucine-rich repeat protein [Function un	87.6
smart00370	26	LRR Leucine-rich repeats, outliers.	84.9
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	84.9
smart00370	26	LRR Leucine-rich repeats, outliers.	84.89
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	84.89
KOG3864	221	consensus Uncharacterized conserved protein [Funct	83.02
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	80.86

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=4.7e-75  Score=689.59  Aligned_cols=570  Identities=37%  Similarity=0.581  Sum_probs=537.0

Q ss_pred             HHhHHHHHHHHhcCCCCCCCCCCC-CCCCCCCCCceeecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCC
Q 005711           41 LEDKASLLLFKSLVQDPTQKLSSW-VGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFT  119 (681)
Q Consensus        41 ~~~~~~l~~~~~~~~~~~~~~~~w-~~~~cc~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~  119 (681)
                      ++|+.||++||+.+.+|.+.+.+| ..++||.|+||+|+ ..++|++|+|+++.+.|.+++.+..+++|++|+|++|.+.
T Consensus        28 ~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~-~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~  106 (968)
T PLN00113         28 AEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCN-NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS  106 (968)
T ss_pred             HHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecC-CCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccC
Confidence            467789999999998887778999 56799999999998 4679999999999999999999999999999999999999


Q ss_pred             cccccccc-CCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCCcCccccCc
Q 005711          120 GRISTCFG-GLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPE  198 (681)
Q Consensus       120 ~~~~~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~  198 (681)
                      +.+|..+. .+++|++|+|++|++++.+|.  +.+++|++|++++| .+.+.+|..++++ ++|++|++++|.+.+.+|.
T Consensus       107 ~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n-~~~~~~p~~~~~l-~~L~~L~L~~n~l~~~~p~  182 (968)
T PLN00113        107 GPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNN-MLSGEIPNDIGSF-SSLKVLDLGGNVLVGKIPN  182 (968)
T ss_pred             CcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCC-cccccCChHHhcC-CCCCEEECccCcccccCCh
Confidence            88887655 999999999999999998886  56899999999999 5678899999999 8999999999999999999


Q ss_pred             cccCCCCCCEEEccCccCcccccCcC---CcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChhhcccCcc
Q 005711          199 SLYYLKSLKHLDLEKNNLTGNVHDFY---QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQAL  275 (681)
Q Consensus       199 ~l~~l~~L~~L~L~~n~l~~~~~~~~---~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L  275 (681)
                      .++++++|++|++++|.+.+.+|..+   .+|++|++++|.+++.+|..++.+++|++|++++|.+.+.+|..++++++|
T Consensus       183 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  262 (968)
T PLN00113        183 SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNL  262 (968)
T ss_pred             hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCC
Confidence            99999999999999999999888755   459999999999999999999999999999999999999999999999999


Q ss_pred             cEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEec
Q 005711          276 THLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFL  355 (681)
Q Consensus       276 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  355 (681)
                      ++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+.   +|+.|++++|.+++.+|..+..+++|+.|++
T Consensus       263 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~---~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L  339 (968)
T PLN00113        263 QYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ---NLEILHLFSNNFTGKIPVALTSLPRLQVLQL  339 (968)
T ss_pred             CEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCC---CCcEEECCCCccCCcCChhHhcCCCCCEEEC
Confidence            9999999999999999999999999999999999999999888776   8999999999999999999999999999999


Q ss_pred             cCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceec
Q 005711          356 SNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGE  435 (681)
Q Consensus       356 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  435 (681)
                      ++|.+.+.+|..++.+++|+.|++++|.+.+.+|..+..+.+|+.+++++|.+.+.+|..+..+++|+.|++++|.+++.
T Consensus       340 ~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~  419 (968)
T PLN00113        340 WSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE  419 (968)
T ss_pred             cCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccccCCCC-----
Q 005711          436 IPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPD-----  510 (681)
Q Consensus       436 ~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~-----  510 (681)
                      +|..+..++.|+.|++++|.+++.++..+..+++|++|++++|++.+.+|..+ ...+|+.||+++|++++.+|.     
T Consensus       420 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l  498 (968)
T PLN00113        420 LPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSL  498 (968)
T ss_pred             CChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhh
Confidence            99999999999999999999999999999999999999999999999888765 468999999999999988764     


Q ss_pred             --CcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCCCCCeEec
Q 005711          511 --AVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNL  587 (681)
Q Consensus       511 --~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  587 (681)
                        ...|+|++|+++|.+|..+.++++|++|+|++|.+++.+|. +..+++|+.|||++|+++|.+|..+..+++|+.+++
T Consensus       499 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l  578 (968)
T PLN00113        499 SELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNI  578 (968)
T ss_pred             hccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEec
Confidence              45799999999999999999999999999999999999998 999999999999999999999999999999999999


Q ss_pred             ccCcceeeCCCCCCCCCccc-cccCCCCCCCCC
Q 005711          588 SYNSFSGFVPWKQGYQKFPG-AFAGNPNLCLES  619 (681)
Q Consensus       588 s~N~l~~~~p~~~~~~~~~~-~~~gn~~lc~~~  619 (681)
                      ++|++.|.+|..+++.++.. ++.||+.+||.+
T Consensus       579 s~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        579 SHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             cCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence            99999999999999988877 899999999864

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.1e-61  Score=571.56  Aligned_cols=505  Identities=37%  Similarity=0.515  Sum_probs=471.9

Q ss_pred             CCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCcccc-CCCCCCEeeCCCCCCCCccCCchhccccCCccE
Q 005711          106 SFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIM-KLRNLRELILKGNPELGGVFPGWVGNFSMNLEK  184 (681)
Q Consensus       106 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~  184 (681)
                      .+++.|||++|.+++.++..|..+++|++|+|++|++++.+|..+. ++++|++|++++| .+.+.+|.  +.+ ++|++
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n-~l~~~~p~--~~l-~~L~~  144 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN-NFTGSIPR--GSI-PNLET  144 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCC-ccccccCc--ccc-CCCCE
Confidence            4789999999999999999999999999999999999999998765 9999999999999 45667775  345 89999


Q ss_pred             EEccCCcCccccCccccCCCCCCEEEccCccCcccccCcC---CcccEEECCCCCCccccchhhccCCCCCEEEccCCcc
Q 005711          185 LDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFY---QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSV  261 (681)
Q Consensus       185 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~---~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l  261 (681)
                      |++++|.+.+.+|..++++++|++|++++|.+.+..|..+   .+|++|++++|.+++.+|..+.++++|++|++++|++
T Consensus       145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  224 (968)
T PLN00113        145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL  224 (968)
T ss_pred             EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence            9999999999999999999999999999999998888765   4599999999999999999999999999999999999


Q ss_pred             ccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCc
Q 005711          262 VGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIP  341 (681)
Q Consensus       262 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p  341 (681)
                      .+.+|..++++++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|..+..+.   +|+.|++++|.+.+.+|
T Consensus       225 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~---~L~~L~Ls~n~l~~~~p  301 (968)
T PLN00113        225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQ---KLISLDLSDNSLSGEIP  301 (968)
T ss_pred             CCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhcc---CcCEEECcCCeeccCCC
Confidence            999999999999999999999999999999999999999999999999999999988777   89999999999999999


Q ss_pred             ccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCC
Q 005711          342 LKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDS  421 (681)
Q Consensus       342 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  421 (681)
                      ..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++
T Consensus       302 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~  381 (968)
T PLN00113        302 ELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGN  381 (968)
T ss_pred             hhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeeccc
Q 005711          422 LKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFST  501 (681)
Q Consensus       422 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~  501 (681)
                      |+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++
T Consensus       382 L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  461 (968)
T PLN00113        382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR  461 (968)
T ss_pred             CCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccCCCC------CcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCc
Q 005711          502 NKFMGFIPD------AVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPG  574 (681)
Q Consensus       502 n~~~~~~p~------~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~  574 (681)
                      |++.+.+|.      ...||+++|+++|.+|..+.++++|+.|+|++|++++.+|. +.++++|++|++++|.++|.+|.
T Consensus       462 n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  541 (968)
T PLN00113        462 NKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPA  541 (968)
T ss_pred             ceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCCh
Confidence            999988875      35799999999999999999999999999999999999998 99999999999999999999999


Q ss_pred             cccCCCCCCeEecccCcceeeCCCCC-CCCCccc-cccCCCCCCC
Q 005711          575 NISSLQELTLLNLSYNSFSGFVPWKQ-GYQKFPG-AFAGNPNLCL  617 (681)
Q Consensus       575 ~l~~l~~L~~L~ls~N~l~~~~p~~~-~~~~~~~-~~~gn~~lc~  617 (681)
                      .+..+++|+.|++++|+++|.+|... .+..+.. ++.+|+..+.
T Consensus       542 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~  586 (968)
T PLN00113        542 SFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGS  586 (968)
T ss_pred             hHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceee
Confidence            99999999999999999999998643 2223333 6777776553

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=9.2e-42  Score=330.22  Aligned_cols=463  Identities=29%  Similarity=0.393  Sum_probs=289.5

Q ss_pred             CCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEc
Q 005711          108 LEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDF  187 (681)
Q Consensus       108 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L  187 (681)
                      |+.+++++|.+.... +.+.++..|.+|++++|+++ ..|++++.+..++.++.++|+.  ..+|..++.+ .+|.+++.
T Consensus        47 l~~lils~N~l~~l~-~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~l--s~lp~~i~s~-~~l~~l~~  121 (565)
T KOG0472|consen   47 LQKLILSHNDLEVLR-EDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKL--SELPEQIGSL-ISLVKLDC  121 (565)
T ss_pred             hhhhhhccCchhhcc-HhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchH--hhccHHHhhh-hhhhhhhc
Confidence            344445555544322 22455555555555555555 4455555555555555555533  3455555555 55555555


Q ss_pred             cCCcCccccCccccCCCCCCEEEccCccCcccccCcC--CcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCC
Q 005711          188 SFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFY--QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGI  265 (681)
Q Consensus       188 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~--~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~  265 (681)
                      ++|.+. .+|++++.+..|+.++..+|+++..+++.+  .++..+++.+|++....|..+ +++.|++||...|-++ .+
T Consensus       122 s~n~~~-el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~-tl  198 (565)
T KOG0472|consen  122 SSNELK-ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLLE-TL  198 (565)
T ss_pred             ccccee-ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhhhh-cC
Confidence            555555 455555555555555555555554443322  224555555565553334444 4888999998888776 68


Q ss_pred             ChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCccccc
Q 005711          266 PTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKIT  345 (681)
Q Consensus       266 p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~  345 (681)
                      |..++.+.+|.-|++.+|.+. ..| +|..+..|.++.++.|++. .+|....  +.+.++.+||+.+|+++ ..|..+.
T Consensus       199 P~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~--~~L~~l~vLDLRdNklk-e~Pde~c  272 (565)
T KOG0472|consen  199 PPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHL--KHLNSLLVLDLRDNKLK-EVPDEIC  272 (565)
T ss_pred             ChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHh--cccccceeeeccccccc-cCchHHH
Confidence            888999999999999999887 455 7888999999999999887 6666654  22337889999999998 7888888


Q ss_pred             CCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCC---cceee-------ccccc---c-ccc
Q 005711          346 ELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQ---LLALI-------VNNNN---L-SGE  411 (681)
Q Consensus       346 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~---L~~L~-------l~~n~---l-~~~  411 (681)
                      .+.+|++||+++|.+++ +|..++++ .|+.|.+.+|.+.. +-..+..+..   |++|.       ++.-.   - .+.
T Consensus       273 lLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrT-iRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t  349 (565)
T KOG0472|consen  273 LLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRT-IRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMT  349 (565)
T ss_pred             HhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHH-HHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCC
Confidence            88999999999999884 56678888 89999999988642 2111111110   11111       00000   0 000


Q ss_pred             -Cc---cccCCCCCccEEEcccCcceeccccccCCCCC---CcEEECCCCcCCCcchhhhhcCCCCCE-EEccCCcCccc
Q 005711          412 -IQ---PELDALDSLKILDISNNQISGEIPLTLAGLKS---LEIVDFSSNNLSGSLNDAITKWTNLKY-FSIARNKLSGN  483 (681)
Q Consensus       412 -~~---~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~---L~~L~L~~n~l~~~~~~~~~~l~~L~~-L~L~~n~l~~~  483 (681)
                       .+   .....+.+.+.|++++-+++ .+|.......+   ....+++.|++. .+|..+..+..+.+ +.+++|.+ +-
T Consensus       350 ~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sf  426 (565)
T KOG0472|consen  350 LPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SF  426 (565)
T ss_pred             CCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-cc
Confidence             00   11123445566666666655 33433222222   455566666654 44444444333322 22333332 24


Q ss_pred             CCcccccCCccceeecccCccccCCC-------CCcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCC
Q 005711          484 LPNWLFSFQAIQMMDFSTNKFMGFIP-------DAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRL  555 (681)
Q Consensus       484 ~p~~~~~l~~L~~L~ls~n~~~~~~p-------~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l  555 (681)
                      +|..++.++.|..|++++|-+.. +|       ..+.||+|.|+|. .+|..+..+..++.+-.++|++....|+ +.+|
T Consensus       427 v~~~l~~l~kLt~L~L~NN~Ln~-LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm  504 (565)
T KOG0472|consen  427 VPLELSQLQKLTFLDLSNNLLND-LPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNM  504 (565)
T ss_pred             chHHHHhhhcceeeecccchhhh-cchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhh
Confidence            45555555555555555543321 22       1234555555555 8899888888899998899999977777 9999


Q ss_pred             CCCCEEECCCCcCcccCCccccCCCCCCeEecccCcce
Q 005711          556 RSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFS  593 (681)
Q Consensus       556 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  593 (681)
                      .+|.+|||.+|.+. .||..++++++|++|++++|+|.
T Consensus       505 ~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  505 RNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            99999999999999 78889999999999999999998

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=8.3e-37  Score=308.55  Aligned_cols=377  Identities=24%  Similarity=0.256  Sum_probs=266.0

Q ss_pred             ccEEEccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCcc
Q 005711          182 LEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSV  261 (681)
Q Consensus       182 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l  261 (681)
                      -+.||+++|.+...-+..|.++++|+.+++.+|.++                      .+|...+...+++.|+|.+|.+
T Consensus        80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt----------------------~IP~f~~~sghl~~L~L~~N~I  137 (873)
T KOG4194|consen   80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT----------------------RIPRFGHESGHLEKLDLRHNLI  137 (873)
T ss_pred             eeeeeccccccccCcHHHHhcCCcceeeeeccchhh----------------------hcccccccccceeEEeeecccc
Confidence            456777777777666666777777777777776665                      3333333334455555555555


Q ss_pred             ccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCc
Q 005711          262 VGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIP  341 (681)
Q Consensus       262 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p  341 (681)
                      +..-...+..++.|+.|||+.|.++......+..-.++++|+|++|.++..-...|..+.   +|..|.|+.|+++...+
T Consensus       138 ~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~ln---sL~tlkLsrNrittLp~  214 (873)
T KOG4194|consen  138 SSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLN---SLLTLKLSRNRITTLPQ  214 (873)
T ss_pred             ccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccc---hheeeecccCcccccCH
Confidence            544444555555566666666655543334444455666666666666654444444444   56666777777765445


Q ss_pred             ccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCC
Q 005711          342 LKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDS  421 (681)
Q Consensus       342 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  421 (681)
                      ..|.+++.|+.|+|..|++.-.---.|.++++|+.|.+..|.+...-...|.++.++++|+++.|++...-..++.++++
T Consensus       215 r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~  294 (873)
T KOG4194|consen  215 RSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTS  294 (873)
T ss_pred             HHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccch
Confidence            56666777777777777765333345667777777777777776655666777777777777777777666667777888


Q ss_pred             ccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeeccc
Q 005711          422 LKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFST  501 (681)
Q Consensus       422 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~  501 (681)
                      |+.|++|+|.+...-++.+..+++|++|+|++|+++..-+..+..+..|++|+|++|.+...-...+..+++|+.|||++
T Consensus       295 L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~  374 (873)
T KOG4194|consen  295 LEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRS  374 (873)
T ss_pred             hhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcC
Confidence            88888888888877778888888888888888888877777788888888888888888755455566777888887777


Q ss_pred             CccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCC--cCCCCCCCEEECCCCcCcccCCccccCC
Q 005711          502 NKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG--LYRLRSLRALDLSHNSLTGQIPGNISSL  579 (681)
Q Consensus       502 n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~--~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  579 (681)
                      |.+++.+.+              -...|..+++|+.|+|.+|++. .||.  +.++..||.|||.+|.+-..-|..|..+
T Consensus       375 N~ls~~IED--------------aa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m  439 (873)
T KOG4194|consen  375 NELSWCIED--------------AAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM  439 (873)
T ss_pred             CeEEEEEec--------------chhhhccchhhhheeecCceee-ecchhhhccCcccceecCCCCcceeecccccccc
Confidence            777665431              1234667999999999999999 5665  8899999999999999998999999998


Q ss_pred             CCCCeEecccCcceeeCCCC
Q 005711          580 QELTLLNLSYNSFSGFVPWK  599 (681)
Q Consensus       580 ~~L~~L~ls~N~l~~~~p~~  599 (681)
                       .|+.|-+..-.|-|.|.-.
T Consensus       440 -~Lk~Lv~nSssflCDCql~  458 (873)
T KOG4194|consen  440 -ELKELVMNSSSFLCDCQLK  458 (873)
T ss_pred             -hhhhhhhcccceEEeccHH
Confidence             9999999988888877533

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-36  Score=307.67  Aligned_cols=367  Identities=24%  Similarity=0.224  Sum_probs=297.9

Q ss_pred             CCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEE
Q 005711          107 FLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLD  186 (681)
Q Consensus       107 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~  186 (681)
                      .-+.||+++|.+...-+..|.++++|+.+++.+|.++ .+|...+...+|+.|+|.+| .+...-...+..+ +.|+.||
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l-~alrslD  155 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHN-LISSVTSEELSAL-PALRSLD  155 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeecc-ccccccHHHHHhH-hhhhhhh
Confidence            4567999999999888888999999999999999998 77876667778999999999 5555555667777 7899999


Q ss_pred             ccCCcCccccCccccCCCCCCEEEccCccCcccccCcCC---cccEEECCCCCCccccchhhccCCCCCEEEccCCcccc
Q 005711          187 FSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQ---SLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVG  263 (681)
Q Consensus       187 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~  263 (681)
                      |+.|.++..--.+|..-.++++|+|++|.++..-...|.   +|..|.|+.|+++...+..|.++++|+.|+|..|++.-
T Consensus       156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri  235 (873)
T KOG4194|consen  156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI  235 (873)
T ss_pred             hhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee
Confidence            999998854444566667899999999998876655544   47888899999986666777778999999999988874


Q ss_pred             CCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCccc
Q 005711          264 GIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLK  343 (681)
Q Consensus       264 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~  343 (681)
                      .--..|.++++|+.|.+..|.+.......|..+.+++.|+|+.|+++..-..++..++   .|+.|++|+|.|..+-++.
T Consensus       236 ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt---~L~~L~lS~NaI~rih~d~  312 (873)
T KOG4194|consen  236 VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLT---SLEQLDLSYNAIQRIHIDS  312 (873)
T ss_pred             ehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccc---hhhhhccchhhhheeecch
Confidence            4455678888899999999988877777788888899999999888765555666666   7888899999888777888


Q ss_pred             ccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCcc---ccCCCC
Q 005711          344 ITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQP---ELDALD  420 (681)
Q Consensus       344 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~l~  420 (681)
                      +.-+++|++|+|++|+++...+..|..+..|++|.|++|.+...-...|.++.+|++|++++|.+++.+.+   .|..++
T Consensus       313 WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~  392 (873)
T KOG4194|consen  313 WSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLP  392 (873)
T ss_pred             hhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccch
Confidence            88888899999999988877777888888888899999888866667778888888888888888876543   467788


Q ss_pred             CccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcC
Q 005711          421 SLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKL  480 (681)
Q Consensus       421 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  480 (681)
                      +|+.|++.+|++.......|.+++.|++|||.+|.+...-|++|..+ .|+.|.+..-.|
T Consensus       393 ~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf  451 (873)
T KOG4194|consen  393 SLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF  451 (873)
T ss_pred             hhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence            88888888888887666788888888888888888887778888887 888887765444

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.7e-39  Score=313.19  Aligned_cols=465  Identities=27%  Similarity=0.370  Sum_probs=361.7

Q ss_pred             EEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCC
Q 005711           84 VVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKG  163 (681)
Q Consensus        84 v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~  163 (681)
                      ...+.++.|.+. .+.+.+.++..|.+|++++|++. ..|++++.+..++.|+.++|+++ .+|..++.+.+|+.++.++
T Consensus        47 l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~  123 (565)
T KOG0472|consen   47 LQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSS  123 (565)
T ss_pred             hhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccc
Confidence            445678888775 45567889999999999999987 56778999999999999999998 8899999999999999999


Q ss_pred             CCCCCccCCchhccccCCccEEEccCCcCccccCccccCCCCCCEEEccCccCcccccCc--CCcccEEECCCCCCcccc
Q 005711          164 NPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDF--YQSLLVLNLGSNRFSGTL  241 (681)
Q Consensus       164 n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~--~~~L~~L~L~~n~l~~~~  241 (681)
                      |..  ..+|..++.+ ..|+.++..+|+++ ..|+.+.++.+|..+++.+|++....|..  +..|++||...|.++ .+
T Consensus       124 n~~--~el~~~i~~~-~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tl  198 (565)
T KOG0472|consen  124 NEL--KELPDSIGRL-LDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TL  198 (565)
T ss_pred             cce--eecCchHHHH-hhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cC
Confidence            954  5688888888 79999999999998 78899999999999999999998776654  456999999999885 89


Q ss_pred             chhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCccccccCccc-cCCCCCcEEeccCCCccCCCChhhhhc
Q 005711          242 PCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRL-VFFEKLLLLDLSFNDLSGPLPSKIAQT  320 (681)
Q Consensus       242 ~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~p~~~~~~  320 (681)
                      |..++.+.+|+.|++..|++. ..| .|..+..|+++.++.|++. .+|... ..++++..||+.+|+++ ..|..+..+
T Consensus       199 P~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clL  274 (565)
T KOG0472|consen  199 PPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLL  274 (565)
T ss_pred             ChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHh
Confidence            999999999999999999997 466 7999999999999999987 566555 48999999999999998 789988877


Q ss_pred             ccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCC--CCCEEE-------ccCCc----Cccc
Q 005711          321 TEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLT--YLQVID-------LSHNM----LSGS  387 (681)
Q Consensus       321 ~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~-------Ls~n~----l~~~  387 (681)
                      .   +|++||+|+|.++ .+|..++++ .|+.|-+.+|.+...-.+.+..-+  -|++|.       ++...    -.+.
T Consensus       275 r---sL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t  349 (565)
T KOG0472|consen  275 R---SLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMT  349 (565)
T ss_pred             h---hhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCC
Confidence            7   8999999999999 688899999 899999999987422111110000  011110       11110    0011


Q ss_pred             -cCcc---cccCCCcceeecccccccccCccccCC--CCCccEEEcccCcceeccccccCCCCCCcEE-ECCCCcCCCcc
Q 005711          388 -IPLN---IVGCFQLLALIVNNNNLSGEIQPELDA--LDSLKILDISNNQISGEIPLTLAGLKSLEIV-DFSSNNLSGSL  460 (681)
Q Consensus       388 -~p~~---~~~~~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L-~L~~n~l~~~~  460 (681)
                       .+..   .....+.+.|+++.-+++......|..  -.-....+++.|++. ++|..+..++.+.+. ++++|.+ +-+
T Consensus       350 ~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv  427 (565)
T KOG0472|consen  350 LPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFV  427 (565)
T ss_pred             CCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccc
Confidence             1111   123345667777777777433333322  223778899999988 778777777666544 4555555 467


Q ss_pred             hhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccccCCCCCc-------ccccCCccccccCCccccccc
Q 005711          461 NDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAV-------GMDLSDNLLHGTIPKGLFQLQ  533 (681)
Q Consensus       461 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~-------~L~Ls~N~l~g~ip~~l~~l~  533 (681)
                      |..+..+++|+.|++++|.+. .+|..++.+..|+.+|++.|+|. .+|...       .+-.++|++...-|..+.++.
T Consensus       428 ~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~  505 (565)
T KOG0472|consen  428 PLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMR  505 (565)
T ss_pred             hHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhh
Confidence            788888999999999988876 78888899999999999999886 345432       344556888744455599999


Q ss_pred             ccceeecCCCcCcccCCCcCCCCCCCEEECCCCcCc
Q 005711          534 GLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLT  569 (681)
Q Consensus       534 ~L~~L~Ls~N~l~~~ip~~~~l~~L~~L~Ls~N~l~  569 (681)
                      +|..|||.+|.+...+|.++++++|+.|++++|.+.
T Consensus       506 nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  506 NLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence            999999999999955555999999999999999998

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=4.6e-37  Score=326.50  Aligned_cols=465  Identities=27%  Similarity=0.297  Sum_probs=281.9

Q ss_pred             cEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCC
Q 005711           83 HVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILK  162 (681)
Q Consensus        83 ~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~  162 (681)
                      +++.|++..|.+-...-+.+.+..+|+.||+++|.+. ..|..+..+.+|+.|+++.|.+. ..|.+..++.+|++|+|.
T Consensus        22 ~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~   99 (1081)
T KOG0618|consen   22 ALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLK   99 (1081)
T ss_pred             HHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheec
Confidence            3666677666554322233444555888888887775 46667777888888888888777 667778888888888888


Q ss_pred             CCCCCCccCCchhccccCCccEEEccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCccccc
Q 005711          163 GNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLP  242 (681)
Q Consensus       163 ~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~  242 (681)
                      +|..  ...|..+..+ .+|++|++++|.+. .+|..+..++.++.+..++|......+...  ++.+++..|.+.+.++
T Consensus       100 ~n~l--~~lP~~~~~l-knl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~--ik~~~l~~n~l~~~~~  173 (1081)
T KOG0618|consen  100 NNRL--QSLPASISEL-KNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTS--IKKLDLRLNVLGGSFL  173 (1081)
T ss_pred             cchh--hcCchhHHhh-hcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhcccc--chhhhhhhhhcccchh
Confidence            8743  5677777777 78888888888876 777777777777777787772222222222  6677777777777777


Q ss_pred             hhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhccc
Q 005711          243 CFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTE  322 (681)
Q Consensus       243 ~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~  322 (681)
                      ..+..++.  .|+|.+|.+.   -..+..+.+|+.|....|++...    -..-++|+.|+.+.|.++...+...     
T Consensus       174 ~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l~~~~~~p~-----  239 (1081)
T KOG0618|consen  174 IDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSEL----EISGPSLTALYADHNPLTTLDVHPV-----  239 (1081)
T ss_pred             cchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceE----EecCcchheeeeccCcceeeccccc-----
Confidence            77776666  6777777765   23455666777777777765421    1234566677777776663322221     


Q ss_pred             CCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceee
Q 005711          323 KAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALI  402 (681)
Q Consensus       323 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~  402 (681)
                      ..+|+++++++|+++ .+|.|++.+.+|+.++..+|.++ .+|..+...++|+.|.+..|.++ -+|....+...|++|+
T Consensus       240 p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLd  316 (1081)
T KOG0618|consen  240 PLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLD  316 (1081)
T ss_pred             cccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeee
Confidence            126777777777776 45677777777777777777764 55666666667777777777766 4555566666677777


Q ss_pred             cccccccccCccccCCCCC-ccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCc
Q 005711          403 VNNNNLSGEIQPELDALDS-LKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLS  481 (681)
Q Consensus       403 l~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  481 (681)
                      +..|++....+..+..... |+.|+.+.|.+.......=...+.|+.|.+.+|.++......+.++.+|+.|+|++|++.
T Consensus       317 L~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~  396 (1081)
T KOG0618|consen  317 LQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN  396 (1081)
T ss_pred             ehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence            7766665433322222222 555555555555222111123455666666666666665556666666666666666665


Q ss_pred             ccCCcccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCCcCCCCCCCEE
Q 005711          482 GNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRAL  561 (681)
Q Consensus       482 ~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L  561 (681)
                      ......+.++..|++|++|+|+++                  .+|..+.++..|++|...+|++. ..|++..++.|+.+
T Consensus       397 ~fpas~~~kle~LeeL~LSGNkL~------------------~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~l~qL~~l  457 (1081)
T KOG0618|consen  397 SFPASKLRKLEELEELNLSGNKLT------------------TLPDTVANLGRLHTLRAHSNQLL-SFPELAQLPQLKVL  457 (1081)
T ss_pred             cCCHHHHhchHHhHHHhcccchhh------------------hhhHHHHhhhhhHHHhhcCCcee-echhhhhcCcceEE
Confidence            322234445555555555555544                  44555555555555555555554 34444455555555


Q ss_pred             ECCCCcCcccCCccccCCCCCCeEecccCc
Q 005711          562 DLSHNSLTGQIPGNISSLQELTLLNLSYNS  591 (681)
Q Consensus       562 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~  591 (681)
                      |+|.|+++...-..-...+.|++||+++|.
T Consensus       458 DlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  458 DLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             ecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            555555543221111122455555555554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.98  E-value=9.2e-35  Score=309.08  Aligned_cols=461  Identities=28%  Similarity=0.321  Sum_probs=370.9

Q ss_pred             cEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCC
Q 005711           83 HVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILK  162 (681)
Q Consensus        83 ~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~  162 (681)
                      ++.+||++++.+. ..|..+..+.+|+.|+++.|.+. ..|.+..++++|++|+|.+|.+. ..|..+..+.+|++|+++
T Consensus        46 ~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS  122 (1081)
T KOG0618|consen   46 KLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLS  122 (1081)
T ss_pred             eeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccc
Confidence            4789999998765 67888999999999999999987 46788999999999999999988 789999999999999999


Q ss_pred             CCCCCCccCCchhccccCCccEEEccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCcccE-EECCCCCCcccc
Q 005711          163 GNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLV-LNLGSNRFSGTL  241 (681)
Q Consensus       163 ~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~-L~L~~n~l~~~~  241 (681)
                      +|.+  +.+|..+..+ +.++.+..++|....    .++... ++.+++..|.+.+.++.....+++ |+|.+|.+.   
T Consensus       123 ~N~f--~~~Pl~i~~l-t~~~~~~~s~N~~~~----~lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~---  191 (1081)
T KOG0618|consen  123 FNHF--GPIPLVIEVL-TAEEELAASNNEKIQ----RLGQTS-IKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEME---  191 (1081)
T ss_pred             hhcc--CCCchhHHhh-hHHHHHhhhcchhhh----hhcccc-chhhhhhhhhcccchhcchhhhheeeecccchhh---
Confidence            9954  7788888888 788999999993221    233333 889999999999988888888777 999999985   


Q ss_pred             chhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcc
Q 005711          242 PCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTT  321 (681)
Q Consensus       242 ~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~  321 (681)
                      ...+.++.+|+.|....|++....    -.-++|+.|+.++|.++...+  -....+|++++++.|+++ .+|++++.+.
T Consensus       192 ~~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~-~lp~wi~~~~  264 (1081)
T KOG0618|consen  192 VLDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLS-NLPEWIGACA  264 (1081)
T ss_pred             hhhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcceeecc--ccccccceeeecchhhhh-cchHHHHhcc
Confidence            345677888999999998876321    234689999999998873222  233568999999999998 5678888877


Q ss_pred             cCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccc-cCC-Ccc
Q 005711          322 EKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIV-GCF-QLL  399 (681)
Q Consensus       322 ~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~~~-~L~  399 (681)
                         +|+.++..+|+++ .+|..+....+|+.|...+|.+. .+|...+++++|++|||..|++. ..|+.+. ... .+.
T Consensus       265 ---nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~  338 (1081)
T KOG0618|consen  265 ---NLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLN  338 (1081)
T ss_pred             ---cceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHH
Confidence               8999999999996 78888888999999999999987 56777888999999999999987 4555433 222 266


Q ss_pred             eeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCc
Q 005711          400 ALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNK  479 (681)
Q Consensus       400 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  479 (681)
                      .+..+.|.+.......-..++.|+.|++.+|.+++..-..+.+.++|+.|+|++|++.......+.++..|+.|+|++|+
T Consensus       339 ~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk  418 (1081)
T KOG0618|consen  339 TLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK  418 (1081)
T ss_pred             HHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccch
Confidence            67777777764443333456789999999999998877788899999999999999985555667889999999999999


Q ss_pred             CcccCCcccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccC-CCcCCCCCC
Q 005711          480 LSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQV-PGLYRLRSL  558 (681)
Q Consensus       480 l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~i-p~~~~l~~L  558 (681)
                      ++ .+|..+..+..|++|...+|++.                  ..| ++.++++|+.+|+|.|+++... |....-++|
T Consensus       419 L~-~Lp~tva~~~~L~tL~ahsN~l~------------------~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~L  478 (1081)
T KOG0618|consen  419 LT-TLPDTVANLGRLHTLRAHSNQLL------------------SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNL  478 (1081)
T ss_pred             hh-hhhHHHHhhhhhHHHhhcCCcee------------------ech-hhhhcCcceEEecccchhhhhhhhhhCCCccc
Confidence            98 78899999999999988888775                  566 7888999999999999987543 332223889


Q ss_pred             CEEECCCCcCcccCCccccCCCCCCeEecccC
Q 005711          559 RALDLSHNSLTGQIPGNISSLQELTLLNLSYN  590 (681)
Q Consensus       559 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  590 (681)
                      ++||+++|.-...--..|..+..+...++.-|
T Consensus       479 kyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  479 KYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             ceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            99999999854444556667777777777776

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=3.2e-34  Score=291.50  Aligned_cols=366  Identities=25%  Similarity=0.353  Sum_probs=282.4

Q ss_pred             CcEEEEEcCCCCCcc-cccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEee
Q 005711           82 GHVVSINLTDTSLSG-QVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELI  160 (681)
Q Consensus        82 ~~v~~L~L~~~~l~g-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  160 (681)
                      .-|+.+|+++|.++| ..|.+...+++++-|.|....+. .+|+.++.|.+|++|.+++|++. .+-..+..++.||.++
T Consensus         7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~   84 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVI   84 (1255)
T ss_pred             ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHh
Confidence            358889999999985 57888889999999999888776 57888999999999999999987 4556788899999999


Q ss_pred             CCCCCCCCccCCchhccccCCccEEEccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCccc
Q 005711          161 LKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGT  240 (681)
Q Consensus       161 L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~  240 (681)
                      +..|++-..-+|..+..+ ..|..||||+|++. ..|..+.+-+++..|+|++|++..++.                   
T Consensus        85 ~R~N~LKnsGiP~diF~l-~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn-------------------  143 (1255)
T KOG0444|consen   85 VRDNNLKNSGIPTDIFRL-KDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPN-------------------  143 (1255)
T ss_pred             hhccccccCCCCchhccc-ccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCc-------------------
Confidence            999888778888888888 88999999999988 788888888888888888887764332                   


Q ss_pred             cchhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCcc-CCCChhhhh
Q 005711          241 LPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLS-GPLPSKIAQ  319 (681)
Q Consensus       241 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~p~~~~~  319 (681)
                        ..+.+++.|-.|||++|++. ..|..+..+..|+.|+|++|.+.......+-.+++|+.|.+++.+-+ ..+|.++..
T Consensus       144 --~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~  220 (1255)
T KOG0444|consen  144 --SLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDD  220 (1255)
T ss_pred             --hHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhh
Confidence              23445566666666666665 45556666667777777776665444444555666666666665422 346666666


Q ss_pred             cccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcc
Q 005711          320 TTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLL  399 (681)
Q Consensus       320 ~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~  399 (681)
                      +.   +|..+|+|.|.+. ..|+.+-++++|+.|+|++|+++ .+....+.-.+|++|++|.|+++ .+|.+++.+++|+
T Consensus       221 l~---NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~  294 (1255)
T KOG0444|consen  221 LH---NLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLT  294 (1255)
T ss_pred             hh---hhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHH
Confidence            66   7777888888877 67777777888888888888876 33344455567788888888887 6788888888888


Q ss_pred             eeecccccccc-cCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCC
Q 005711          400 ALIVNNNNLSG-EIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARN  478 (681)
Q Consensus       400 ~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  478 (681)
                      .|...+|+++- -+|..++++.+|+.+..++|.+. .+|..++.|.+|+.|.|+.|++. ++|+++.-++.|+.||+++|
T Consensus       295 kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreN  372 (1255)
T KOG0444|consen  295 KLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLREN  372 (1255)
T ss_pred             HHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCC
Confidence            88888887764 36778888888998888888887 78888999999999999999887 78888888899999999888


Q ss_pred             cCc
Q 005711          479 KLS  481 (681)
Q Consensus       479 ~l~  481 (681)
                      .-.
T Consensus       373 pnL  375 (1255)
T KOG0444|consen  373 PNL  375 (1255)
T ss_pred             cCc
Confidence            654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=9.4e-34  Score=288.11  Aligned_cols=342  Identities=26%  Similarity=0.356  Sum_probs=190.2

Q ss_pred             CCCCCEEEccCCCCC-CcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCCcCccccCccccCCCCCC
Q 005711          129 LSGLKTLDLSYNKFV-GVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLK  207 (681)
Q Consensus       129 l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~  207 (681)
                      ++-.+-.|+++|.++ +.+|.....++.++.|.|...++  ..+|..++.+ .+|++|.+++|++. .+...+..++.|+
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L--~~vPeEL~~l-qkLEHLs~~HN~L~-~vhGELs~Lp~LR   81 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKL--EQVPEELSRL-QKLEHLSMAHNQLI-SVHGELSDLPRLR   81 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhh--hhChHHHHHH-hhhhhhhhhhhhhH-hhhhhhccchhhH
Confidence            344455566666665 34555555555555555544422  3445555555 45555555555544 3333444455555


Q ss_pred             EEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCcccc
Q 005711          208 HLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNY  287 (681)
Q Consensus       208 ~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  287 (681)
                      .+++..|++..                    .-+|..+..+..|+.|||++|++. ..|..+..-+++-.|+|++|++. 
T Consensus        82 sv~~R~N~LKn--------------------sGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-  139 (1255)
T KOG0444|consen   82 SVIVRDNNLKN--------------------SGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-  139 (1255)
T ss_pred             HHhhhcccccc--------------------CCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-
Confidence            55555544431                    135666777777777777777776 56777777777777777777776 


Q ss_pred             ccCc-cccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccc-cccc
Q 005711          288 EISP-RLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLI-GEIP  365 (681)
Q Consensus       288 ~~~~-~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~~  365 (681)
                      .+|. -+.+++.|-.|||++|.+. .+|+.+..+.   .|+.|+|++|.+...--..+..+++|+.|++++.+-+ ..+|
T Consensus       140 tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~---~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~P  215 (1255)
T KOG0444|consen  140 TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLS---MLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIP  215 (1255)
T ss_pred             cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHh---hhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCC
Confidence            3443 3456677777777777776 4555555555   6777777777665433334445566666666665432 2456


Q ss_pred             cccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCC
Q 005711          366 ARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKS  445 (681)
Q Consensus       366 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  445 (681)
                      ..+..+.+|..+|+|.|.+. .+|+++..+++|+.|++++|.++.. ....+.-.+|++|++|.|+++ .+|+.+..+++
T Consensus       216 tsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~k  292 (1255)
T KOG0444|consen  216 TSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRNQLT-VLPDAVCKLTK  292 (1255)
T ss_pred             CchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeee-eccHHHHhhhhhhccccchhc-cchHHHhhhHH
Confidence            66666666777777766665 5566665555555555555555422 112223344555555555555 44555555555


Q ss_pred             CcEEECCCCcCC-CcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCcc
Q 005711          446 LEIVDFSSNNLS-GSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKF  504 (681)
Q Consensus       446 L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~  504 (681)
                      |+.|.+.+|+++ .-+|..++.+.+|+++..++|.+. ..|+.++.+..|+.|.|+.|++
T Consensus       293 L~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrL  351 (1255)
T KOG0444|consen  293 LTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRL  351 (1255)
T ss_pred             HHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccce
Confidence            555555555544 224444555555555555544443 3444444444444444444433

>PLN03210 Resistant to P

Probab=99.91  E-value=4e-23  Score=245.90  Aligned_cols=340  Identities=21%  Similarity=0.226  Sum_probs=174.9

Q ss_pred             cccccCCCCCCEEEccCCC------CCCcCCccccCCC-CCCEeeCCCCCCCCccCCchhccccCCccEEEccCCcCccc
Q 005711          123 STCFGGLSGLKTLDLSYNK------FVGVVPDAIMKLR-NLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGE  195 (681)
Q Consensus       123 ~~~~~~l~~L~~L~Ls~n~------l~~~~p~~~~~l~-~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~  195 (681)
                      +.+|.++++|+.|.+..+.      +...+|..|..++ +|+.|++.+++.  ..+|..+. . .+|++|++.+|.+. .
T Consensus       551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l--~~lP~~f~-~-~~L~~L~L~~s~l~-~  625 (1153)
T PLN03210        551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL--RCMPSNFR-P-ENLVKLQMQGSKLE-K  625 (1153)
T ss_pred             HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCC--CCCCCcCC-c-cCCcEEECcCcccc-c
Confidence            3456667777777765443      2234555555553 467777766643  44555542 3 56777777777665 4


Q ss_pred             cCccccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChhhcccCcc
Q 005711          196 IPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQAL  275 (681)
Q Consensus       196 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L  275 (681)
                      +|..+..+++|+.|+++++.....+|.                      +..+++|+.|++++|.....+|..+..+++|
T Consensus       626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip~----------------------ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L  683 (1153)
T PLN03210        626 LWDGVHSLTGLRNIDLRGSKNLKEIPD----------------------LSMATNLETLKLSDCSSLVELPSSIQYLNKL  683 (1153)
T ss_pred             cccccccCCCCCEEECCCCCCcCcCCc----------------------cccCCcccEEEecCCCCccccchhhhccCCC
Confidence            566666667777777766543333322                      3334444445554444434444444445555


Q ss_pred             cEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEec
Q 005711          276 THLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFL  355 (681)
Q Consensus       276 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  355 (681)
                      +.|++++|..-..+|..+ ++++|+.|++++|...+.+|...      .+|+.|++++|.+. .+|..+ .+++|++|++
T Consensus       684 ~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~------~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l  754 (1153)
T PLN03210        684 EDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDIS------TNISWLDLDETAIE-EFPSNL-RLENLDELIL  754 (1153)
T ss_pred             CEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccccc------CCcCeeecCCCccc-cccccc-cccccccccc
Confidence            555555443333334332 34455555555544333333211      14555555555544 334332 3445555555


Q ss_pred             cCCccc-------cccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcc
Q 005711          356 SNNLLI-------GEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDIS  428 (681)
Q Consensus       356 ~~n~l~-------~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls  428 (681)
                      .++...       ...+......++|+.|++++|...+.+|..+..+++|+.|++++|...+.+|... .+++|+.|+++
T Consensus       755 ~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls  833 (1153)
T PLN03210        755 CEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLS  833 (1153)
T ss_pred             cccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECC
Confidence            442211       0111111223455566666655555555555556666666665554444455443 45566666666


Q ss_pred             cCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCc
Q 005711          429 NNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNK  503 (681)
Q Consensus       429 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~  503 (681)
                      +|.....+|..   .++|+.|++++|.+. .+|.++..+++|++|++++|.--..+|..+..+++|+.+++++|.
T Consensus       834 ~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        834 GCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            65444344432   245666666666665 455566666666666666643333455555666666666666653

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.91  E-value=4.6e-23  Score=245.45  Aligned_cols=316  Identities=21%  Similarity=0.249  Sum_probs=188.1

Q ss_pred             CccccCCCCCCEeeCCCCCC-----CCccCCchhccccCCccEEEccCCcCccccCccccCCCCCCEEEccCccCccccc
Q 005711          147 PDAIMKLRNLRELILKGNPE-----LGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVH  221 (681)
Q Consensus       147 p~~~~~l~~L~~L~L~~n~~-----~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~  221 (681)
                      +.+|.++++|++|.+..+..     ....+|..+..++.+|+.|++.++.+. .+|..+ ...+|++|++          
T Consensus       551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L----------  618 (1153)
T PLN03210        551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQM----------  618 (1153)
T ss_pred             HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEEC----------
Confidence            44577777788777765421     112344444444344555555555544 444443 2344444444          


Q ss_pred             CcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcE
Q 005711          222 DFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLL  301 (681)
Q Consensus       222 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  301 (681)
                                 .+|.+. .++..+..+++|+.|+++++...+.+|. ++.+++|+.|++++|.....+|..+..+++|+.
T Consensus       619 -----------~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~  685 (1153)
T PLN03210        619 -----------QGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLED  685 (1153)
T ss_pred             -----------cCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCE
Confidence                       444443 4566667788899999988765556664 778889999999988776788888888999999


Q ss_pred             EeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccC
Q 005711          302 LDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSH  381 (681)
Q Consensus       302 L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~  381 (681)
                      |++++|...+.+|..+ .+   ++|+.|++++|...+.+|..   .++|++|++++|.+. .+|..+ .+++|+.|++.+
T Consensus       686 L~L~~c~~L~~Lp~~i-~l---~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~  756 (1153)
T PLN03210        686 LDMSRCENLEILPTGI-NL---KSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCE  756 (1153)
T ss_pred             EeCCCCCCcCccCCcC-CC---CCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccc
Confidence            9998876656777654 33   37888888888766566643   357888888888875 456544 567788887776


Q ss_pred             CcCcc-------ccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCC
Q 005711          382 NMLSG-------SIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSN  454 (681)
Q Consensus       382 n~l~~-------~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n  454 (681)
                      +....       ..+......++|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ ++++|+.|++++|
T Consensus       757 ~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c  835 (1153)
T PLN03210        757 MKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGC  835 (1153)
T ss_pred             cchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCC
Confidence            43211       111111223455555555555555555555555555555555554333444433 4555555555555


Q ss_pred             cCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeeccc
Q 005711          455 NLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFST  501 (681)
Q Consensus       455 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~  501 (681)
                      .....+|..   .++|++|++++|.++ .+|.++..+++|+.|++++
T Consensus       836 ~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~  878 (1153)
T PLN03210        836 SRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNG  878 (1153)
T ss_pred             Ccccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCC
Confidence            433333321   234555555555554 3455555555555555544

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.87  E-value=5.3e-24  Score=207.14  Aligned_cols=356  Identities=22%  Similarity=0.247  Sum_probs=230.1

Q ss_pred             CcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCC-CccccccCccccCCCCCcEEe
Q 005711          225 QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSH-NHLNYEISPRLVFFEKLLLLD  303 (681)
Q Consensus       225 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~  303 (681)
                      +.-..++|..|+++...+.+|..+++|+.|||+.|+++.+-|+.|.+++++..|.+.+ |.++......|..+..++.|.
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence            3466777777777766677778888888888888888877788888887777766655 777755555677778888888


Q ss_pred             ccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcc-cccCCCCCCEEeccCCccc------------cccccccCC
Q 005711          304 LSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPL-KITELKSLQALFLSNNLLI------------GEIPARIGN  370 (681)
Q Consensus       304 L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~------------~~~~~~l~~  370 (681)
                      +.-|++.-...+.+..+.   ++..|.+.+|.+. .++. .+..+.+++.+++..|.+.            ...|..++.
T Consensus       147 lNan~i~Cir~~al~dL~---~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsg  222 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLP---SLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSG  222 (498)
T ss_pred             cChhhhcchhHHHHHHhh---hcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccc
Confidence            877777765555666665   6777777788777 3443 6677777777777777631            111111121


Q ss_pred             CCCCCEEEc-------------------------cCCcCccccC-cccccCCCcceeecccccccccCccccCCCCCccE
Q 005711          371 LTYLQVIDL-------------------------SHNMLSGSIP-LNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKI  424 (681)
Q Consensus       371 l~~L~~L~L-------------------------s~n~l~~~~p-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  424 (681)
                      .....-..+                         +.+...+.-| .+|..+++|+++++++|++++.-+.+|.+...++.
T Consensus       223 arc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~e  302 (498)
T KOG4237|consen  223 ARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQE  302 (498)
T ss_pred             ceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhh
Confidence            111111111                         1122222223 34667777888888888888777777777788888


Q ss_pred             EEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccC-----Ccc-----------c
Q 005711          425 LDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNL-----PNW-----------L  488 (681)
Q Consensus       425 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-----p~~-----------~  488 (681)
                      |.|..|++...-...|.++..|++|+|.+|+|+...|.+|..+.+|.+|.+-.|.+...-     -+|           .
T Consensus       303 L~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~C  382 (498)
T KOG4237|consen  303 LYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRC  382 (498)
T ss_pred             hhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCC
Confidence            888888777655667777778888888888887777777777777888877777653210     011           1


Q ss_pred             ccCCccceeecccCcccc---CCCCC-----------------cccccCCccccccCCcccccccccceeecCCCcCccc
Q 005711          489 FSFQAIQMMDFSTNKFMG---FIPDA-----------------VGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQ  548 (681)
Q Consensus       489 ~~l~~L~~L~ls~n~~~~---~~p~~-----------------~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~  548 (681)
                      .....++.+++++..+..   .-|..                 ++.-.|+..+. .+|..+-  ..-.+|++.+|.++ .
T Consensus       383 q~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~  458 (498)
T KOG4237|consen  383 QSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-S  458 (498)
T ss_pred             CCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-c
Confidence            112234444444443211   11110                 23445555554 5555432  25678889999888 5


Q ss_pred             CCCcCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccC
Q 005711          549 VPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYN  590 (681)
Q Consensus       549 ip~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  590 (681)
                      +|.- .+.+| .+|+++|+++...-..|.+++.|.+|-++||
T Consensus       459 vp~~-~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  459 VPDE-LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             cCHH-HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            5652 45677 8899999998777778889999999988887

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.85  E-value=5.7e-21  Score=211.25  Aligned_cols=262  Identities=26%  Similarity=0.283  Sum_probs=183.9

Q ss_pred             cccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEE
Q 005711          274 ALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQAL  353 (681)
Q Consensus       274 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  353 (681)
                      .-..|+++++.++ .+|..+.  ++|+.|++.+|+++ .+|..      .++|++|++++|+++ .+|..   .++|+.|
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l------p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L  267 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL------PPELRTLEVSGNQLT-SLPVL---PPGLLEL  267 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC------CCCCcEEEecCCccC-cccCc---cccccee
Confidence            4567889999887 6777664  47888999999887 45542      137889999999888 45542   3678888


Q ss_pred             eccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcce
Q 005711          354 FLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQIS  433 (681)
Q Consensus       354 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  433 (681)
                      ++++|.++. +|..   .++|+.|++++|+++ .+|..   .++|+.|++++|++.+ +|..   ..+|+.|++++|.++
T Consensus       268 ~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~  335 (788)
T PRK15387        268 SIFSNPLTH-LPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT  335 (788)
T ss_pred             eccCCchhh-hhhc---hhhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCC---cccccccccccCccc
Confidence            888888763 4432   256788888888887 35542   3578888888888775 3322   235777788888877


Q ss_pred             eccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccccCCCCCcc
Q 005711          434 GEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVG  513 (681)
Q Consensus       434 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~  513 (681)
                      + +|..   ..+|++|++++|++++ +|..   .++|+.|++++|++. .+|..   ..+|+.|++++|+++        
T Consensus       336 ~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt--------  395 (788)
T PRK15387        336 S-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT--------  395 (788)
T ss_pred             c-cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCccc--------
Confidence            3 4532   2467888888888874 4432   246777788888777 35543   234566666665554        


Q ss_pred             cccCCccccccCCcccccccccceeecCCCcCcccCCCcCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccCcce
Q 005711          514 MDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFS  593 (681)
Q Consensus       514 L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  593 (681)
                                .+|..   .++|+.|++++|++++ +|.+  ..+|+.|++++|+++ .+|..+..++.|+.|++++|+|+
T Consensus       396 ----------~LP~l---~s~L~~LdLS~N~Lss-IP~l--~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls  458 (788)
T PRK15387        396 ----------SLPVL---PSELKELMVSGNRLTS-LPML--PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS  458 (788)
T ss_pred             ----------CCCCc---ccCCCEEEccCCcCCC-CCcc--hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCC
Confidence                      34432   2578888999998884 6652  346788899999988 78888888889999999999998


Q ss_pred             eeCCC
Q 005711          594 GFVPW  598 (681)
Q Consensus       594 ~~~p~  598 (681)
                      |.+|.
T Consensus       459 ~~~~~  463 (788)
T PRK15387        459 ERTLQ  463 (788)
T ss_pred             chHHH
Confidence            87664

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.85  E-value=1.2e-20  Score=208.68  Aligned_cols=225  Identities=26%  Similarity=0.335  Sum_probs=128.1

Q ss_pred             CCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCE
Q 005711          297 EKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQV  376 (681)
Q Consensus       297 ~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  376 (681)
                      ++|++|++++|+++ .+|...      ++|+.|++++|.++ .+|..   .++|+.|++++|+++. +|.   ..++|+.
T Consensus       242 ~~Lk~LdLs~N~Lt-sLP~lp------~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~  306 (788)
T PRK15387        242 PELRTLEVSGNQLT-SLPVLP------PGLLELSIFSNPLT-HLPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQE  306 (788)
T ss_pred             CCCcEEEecCCccC-cccCcc------cccceeeccCCchh-hhhhc---hhhcCEEECcCCcccc-ccc---cccccce
Confidence            44555555555554 233211      14555555555554 23321   1345555555555542 332   1245566


Q ss_pred             EEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcC
Q 005711          377 IDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNL  456 (681)
Q Consensus       377 L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l  456 (681)
                      |++++|.+++ +|..   ..+|+.|.+++|.+++ +|.   ...+|+.|++++|++++ +|..   ..+|+.|++++|++
T Consensus       307 LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~---lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L  374 (788)
T PRK15387        307 LSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPT---LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRL  374 (788)
T ss_pred             eECCCCcccc-CCCC---cccccccccccCcccc-ccc---cccccceEecCCCccCC-CCCC---Ccccceehhhcccc
Confidence            6666665553 3321   1245555666666553 332   11467778888877773 4432   34667778888877


Q ss_pred             CCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccc
Q 005711          457 SGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLE  536 (681)
Q Consensus       457 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~  536 (681)
                      ++ +|..   .++|+.|++++|++++ +|..   .++|+.|++++|+++                  .+|..   ..+|+
T Consensus       375 ~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls------------------sIP~l---~~~L~  425 (788)
T PRK15387        375 TS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT------------------SLPML---PSGLL  425 (788)
T ss_pred             cc-Cccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC------------------CCCcc---hhhhh
Confidence            73 5543   2467888888888874 5532   245666666666654                  34432   23567


Q ss_pred             eeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccC
Q 005711          537 YLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISS  578 (681)
Q Consensus       537 ~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~  578 (681)
                      .|++++|+++ .+|. +.++++|+.|+|++|.+++.+|..+..
T Consensus       426 ~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~  467 (788)
T PRK15387        426 SLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE  467 (788)
T ss_pred             hhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence            7788888877 5666 777788888888888888777766533

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.85  E-value=4.1e-23  Score=200.97  Aligned_cols=379  Identities=21%  Similarity=0.212  Sum_probs=213.9

Q ss_pred             CccEEEccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCcc----cEEECCCCCCccccchhhccCCCCCEEEc
Q 005711          181 NLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSL----LVLNLGSNRFSGTLPCFAASAMSLTVLKL  256 (681)
Q Consensus       181 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L----~~L~L~~n~l~~~~~~~~~~~~~L~~L~L  256 (681)
                      .-..++|..|+++...|.+|+.+++|+.|||++|.|+.+.|+.|..|    +.+..++|+++......|+.+..++.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            34455555566554444556666666666666666666555555442    22233346665444455666666666666


Q ss_pred             cCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccC------------CCChhhhhcccCC
Q 005711          257 DNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSG------------PLPSKIAQTTEKA  324 (681)
Q Consensus       257 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~------------~~p~~~~~~~~~~  324 (681)
                      .-|++.-...+.+..++++..|.+.+|.+...--..+..+..++.+.+..|.+..            ..|..++...   
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar---  224 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR---  224 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce---
Confidence            6666665555666666666666666666653333355566666666666554211            1111111111   


Q ss_pred             CccEEEccCCCCcCCCcccccC-CCCCCEEeccCCccccccc-cccCCCCCCCEEEccCCcCccccCcccccCCCcceee
Q 005711          325 GLVLLDLSHNRFSGEIPLKITE-LKSLQALFLSNNLLIGEIP-ARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALI  402 (681)
Q Consensus       325 ~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~  402 (681)
                      ...-..+.+.++...-+..|.. +..+..=..+.+...++.| ..|..+++|+.|++++|++++.-+.+|.+...+++|.
T Consensus       225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~  304 (498)
T KOG4237|consen  225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY  304 (498)
T ss_pred             ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence            1111222222222111111111 1111111112222222322 3466777777777777777777777777777777777


Q ss_pred             cccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCc-----chhhhh-----------c
Q 005711          403 VNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGS-----LNDAIT-----------K  466 (681)
Q Consensus       403 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~-----------~  466 (681)
                      +..|++...-...|.++..|+.|+|.+|+++-..|..|..+.+|.+|.+-.|.+.-.     +-+|+.           .
T Consensus       305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~  384 (498)
T KOG4237|consen  305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQS  384 (498)
T ss_pred             cCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCC
Confidence            777777666666677777888888888888777777777777788887777765311     111211           1


Q ss_pred             CCCCCEEEccCCcCcc---cCCcccc---------cCCcccee-ecccCcccc---CCCC-CcccccCCccccccCCccc
Q 005711          467 WTNLKYFSIARNKLSG---NLPNWLF---------SFQAIQMM-DFSTNKFMG---FIPD-AVGMDLSDNLLHGTIPKGL  529 (681)
Q Consensus       467 l~~L~~L~L~~n~l~~---~~p~~~~---------~l~~L~~L-~ls~n~~~~---~~p~-~~~L~Ls~N~l~g~ip~~l  529 (681)
                      -..++.+.+++..+..   ..|+..+         .++-+... ..|+..+..   -+|. ...+.+.+|.++ .+|.+ 
T Consensus       385 p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP~d~telyl~gn~~~-~vp~~-  462 (498)
T KOG4237|consen  385 PGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIPVDVTELYLDGNAIT-SVPDE-  462 (498)
T ss_pred             CchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCCchhHHHhcccchhc-ccCHH-
Confidence            1245566666654431   1222111         22333322 233333221   1332 247999999999 88988 


Q ss_pred             ccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCC
Q 005711          530 FQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHN  566 (681)
Q Consensus       530 ~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N  566 (681)
                       .+.+| .+|+|+|+++..--. |.++++|.+|-|++|
T Consensus       463 -~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  463 -LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             -HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence             78889 999999999855444 889999999999987

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.83  E-value=6.2e-20  Score=204.51  Aligned_cols=247  Identities=21%  Similarity=0.291  Sum_probs=125.3

Q ss_pred             cCCHHhHHHHHHHHhcCCCCCCCCC----CC-CCCCCCCCCc----------------eeecCCCCcEEEEEcCCCCCcc
Q 005711           38 ELNLEDKASLLLFKSLVQDPTQKLS----SW-VGSNCTNWTG----------------VACNFQTGHVVSINLTDTSLSG   96 (681)
Q Consensus        38 ~~~~~~~~~l~~~~~~~~~~~~~~~----~w-~~~~cc~w~g----------------v~c~~~~~~v~~L~L~~~~l~g   96 (681)
                      ....++.+.+.+....+..|. ...    .| .+.+.|.-+.                |.|  ..+.|+.+...+.....
T Consensus        59 ~~~~~~~~~~~~~~~~l~~p~-~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~--~~~~vt~l~~~g~~~~~  135 (754)
T PRK15370         59 TASPEEIKSKFECLRMLAFPA-YADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEG--GGKSVTYTRVTESEQAS  135 (754)
T ss_pred             CCCHHHHHHHHHHHHHhcCCc-hhhccccccCCCCcccccCCcchhhheeeecCCceEEec--CCCcccccccccccccc
Confidence            345667778888888887762 333    48 4557776443                556  35667777765532211


Q ss_pred             cccc----------------------------c---c--cCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCC
Q 005711           97 QVHP----------------------------R---L--CKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFV  143 (681)
Q Consensus        97 ~~~~----------------------------~---l--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  143 (681)
                      ....                            .   +  +-..+...|+++++.++. +|..+.  +.|+.|+|++|+++
T Consensus       136 ~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lt  212 (754)
T PRK15370        136 SASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLTT-IPACIP--EQITTLILDNNELK  212 (754)
T ss_pred             cCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCC
Confidence            1000                            0   0  111345667776666663 444332  35677777777666


Q ss_pred             CcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCCcCccccCccccCCCCCCEEEccCccCcccccCc
Q 005711          144 GVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDF  223 (681)
Q Consensus       144 ~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~  223 (681)
                       .+|..+.  ++|++|++++|++ . .+|..+.   .+|++|++++|.+. .+|..+.  .+|+.|++++|+++......
T Consensus       213 -sLP~~l~--~nL~~L~Ls~N~L-t-sLP~~l~---~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~LP~~l  281 (754)
T PRK15370        213 -SLPENLQ--GNIKTLYANSNQL-T-SIPATLP---DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISCLPENL  281 (754)
T ss_pred             -cCChhhc--cCCCEEECCCCcc-c-cCChhhh---ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCcccccc
Confidence             4455443  4666777766633 2 3454332   35666666666665 4555443  35666666666665432222


Q ss_pred             CCcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEe
Q 005711          224 YQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLD  303 (681)
Q Consensus       224 ~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  303 (681)
                      ..+|+.|++++|++++ +|..+.  ++|+.|++++|.++. +|..+  .++|+.|++++|.+++ +|..+  .++|+.|+
T Consensus       282 ~~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~  352 (754)
T PRK15370        282 PEELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASL--PPELQVLD  352 (754)
T ss_pred             CCCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChhh--cCcccEEE
Confidence            2345555555555542 232221  234445555554442 23222  1344444444444442 33222  13444444


Q ss_pred             ccCCCcc
Q 005711          304 LSFNDLS  310 (681)
Q Consensus       304 L~~n~l~  310 (681)
                      +++|+++
T Consensus       353 Ls~N~L~  359 (754)
T PRK15370        353 VSKNQIT  359 (754)
T ss_pred             CCCCCCC
Confidence            4444443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.79  E-value=3.9e-19  Score=198.21  Aligned_cols=245  Identities=23%  Similarity=0.374  Sum_probs=129.9

Q ss_pred             ccEEEccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCcc
Q 005711          182 LEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSV  261 (681)
Q Consensus       182 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l  261 (681)
                      ...|+++++.++ .+|..+.  +.|+.|++++|.++......+.+|++|++++|+++ .+|..+.  .+|+.|++++|.+
T Consensus       180 ~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L  253 (754)
T PRK15370        180 KTELRLKILGLT-TIPACIP--EQITTLILDNNELKSLPENLQGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRI  253 (754)
T ss_pred             ceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCCcCChhhccCCCEEECCCCccc-cCChhhh--ccccEEECcCCcc
Confidence            445555555555 3444332  34555555555555443333444555555555554 3343332  2466666666665


Q ss_pred             ccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCc
Q 005711          262 VGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIP  341 (681)
Q Consensus       262 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p  341 (681)
                      . .+|..+.  .+|+.|++++|+++ .+|..+.  ++|+.|++++|++++ +|..+.     ++|+.|++++|.++. +|
T Consensus       254 ~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp-----~sL~~L~Ls~N~Lt~-LP  320 (754)
T PRK15370        254 T-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP-----SGITHLNVQSNSLTA-LP  320 (754)
T ss_pred             C-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch-----hhHHHHHhcCCcccc-CC
Confidence            5 4454442  35666666666665 3444332  356666666666652 443322     146666666666663 44


Q ss_pred             ccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCC
Q 005711          342 LKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDS  421 (681)
Q Consensus       342 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  421 (681)
                      ..+.  ++|+.|++++|.+++ +|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|.++. +|..+.  .+
T Consensus       321 ~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~--~s  389 (754)
T PRK15370        321 ETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LPENLP--AA  389 (754)
T ss_pred             cccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhHH--HH
Confidence            3332  466666666666653 444332  46666666666665 3454332  456666666666553 333332  24


Q ss_pred             ccEEEcccCcceecccc----ccCCCCCCcEEECCCCcCC
Q 005711          422 LKILDISNNQISGEIPL----TLAGLKSLEIVDFSSNNLS  457 (681)
Q Consensus       422 L~~L~Ls~n~l~~~~p~----~~~~l~~L~~L~L~~n~l~  457 (681)
                      |+.|++++|++. .+|.    ....++.+..+++.+|.++
T Consensus       390 L~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        390 LQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            666666666665 3332    2333456666666666665

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.74  E-value=4.3e-19  Score=184.03  Aligned_cols=256  Identities=25%  Similarity=0.288  Sum_probs=111.7

Q ss_pred             EEcCCCCCcc-cccccccCCCCCCEEECCCCcCCcc----ccccccCCCCCCEEEccCCCCCC------cCCccccCCCC
Q 005711           87 INLTDTSLSG-QVHPRLCKLSFLEFLVLSSNAFTGR----ISTCFGGLSGLKTLDLSYNKFVG------VVPDAIMKLRN  155 (681)
Q Consensus        87 L~L~~~~l~g-~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~------~~p~~~~~l~~  155 (681)
                      |+|.++.+++ .....+..++.|++|+++++.+++.    ++..+...+.|++|+++++.+.+      .++..+..+++
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~   82 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG   82 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence            4555555542 2233344455566666666665432    44445555566666666665542      12233444455


Q ss_pred             CCEeeCCCCCCCCccCCchhccccCC---ccEEEccCCcCcc----ccCccccCC-CCCCEEEccCccCcccccCcCCcc
Q 005711          156 LRELILKGNPELGGVFPGWVGNFSMN---LEKLDFSFNSFCG----EIPESLYYL-KSLKHLDLEKNNLTGNVHDFYQSL  227 (681)
Q Consensus       156 L~~L~L~~n~~~~~~~p~~l~~l~~~---L~~L~L~~n~l~~----~~p~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~L  227 (681)
                      |++|++++|. +.+..+..+..+ .+   |++|++++|.+.+    .+...+..+ ++|+.|++++|.+++...      
T Consensus        83 L~~L~l~~~~-~~~~~~~~~~~l-~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~------  154 (319)
T cd00116          83 LQELDLSDNA-LGPDGCGVLESL-LRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC------  154 (319)
T ss_pred             eeEEEccCCC-CChhHHHHHHHH-hccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH------
Confidence            5555555542 222222222222 12   4444444444431    111222233 334444444433331110      


Q ss_pred             cEEECCCCCCccccchhhccCCCCCEEEccCCccccC----CChhhcccCcccEEecCCCccccc----cCccccCCCCC
Q 005711          228 LVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGG----IPTCIASLQALTHLNLSHNHLNYE----ISPRLVFFEKL  299 (681)
Q Consensus       228 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L  299 (681)
                                 ..++..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+++.    +...+..+++|
T Consensus       155 -----------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L  223 (319)
T cd00116         155 -----------EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSL  223 (319)
T ss_pred             -----------HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCC
Confidence                       01233444555666666666665531    222233445666666666655422    22233445556


Q ss_pred             cEEeccCCCccCCCChhhhhcc--cCCCccEEEccCCCCcC----CCcccccCCCCCCEEeccCCccc
Q 005711          300 LLLDLSFNDLSGPLPSKIAQTT--EKAGLVLLDLSHNRFSG----EIPLKITELKSLQALFLSNNLLI  361 (681)
Q Consensus       300 ~~L~L~~n~l~~~~p~~~~~~~--~~~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~  361 (681)
                      +.|++++|.+++.....+....  ..+.|+.|++++|.+++    .+...+..+++|+++++++|.+.
T Consensus       224 ~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         224 EVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             CEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence            6666666655432222221110  01245555555555441    11222333344555555555444

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.74  E-value=5.8e-19  Score=183.03  Aligned_cols=261  Identities=22%  Similarity=0.280  Sum_probs=140.0

Q ss_pred             hhhccCCCCCEEEccCCccccC----CChhhcccCcccEEecCCCcccc------ccCccccCCCCCcEEeccCCCccCC
Q 005711          243 CFAASAMSLTVLKLDNNSVVGG----IPTCIASLQALTHLNLSHNHLNY------EISPRLVFFEKLLLLDLSFNDLSGP  312 (681)
Q Consensus       243 ~~~~~~~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~------~~~~~l~~l~~L~~L~L~~n~l~~~  312 (681)
                      ..+..+..|++|+++++.++..    ++..+...+++++++++++.+.+      .++..+..+++|+.|++++|.+.+.
T Consensus        17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~   96 (319)
T cd00116          17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD   96 (319)
T ss_pred             HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence            3344444556666665555321    23334444556666665555441      1223444566666666666666554


Q ss_pred             CChhhhhcccCCCccEEEccCCCCcC----CCcccccCC-CCCCEEeccCCccccc----cccccCCCCCCCEEEccCCc
Q 005711          313 LPSKIAQTTEKAGLVLLDLSHNRFSG----EIPLKITEL-KSLQALFLSNNLLIGE----IPARIGNLTYLQVIDLSHNM  383 (681)
Q Consensus       313 ~p~~~~~~~~~~~L~~L~Ls~n~l~~----~~p~~l~~l-~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~  383 (681)
                      .+..+..+...++|++|++++|++++    .+...+..+ ++|++|++++|.+++.    ++..+..+++|++|++++|.
T Consensus        97 ~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~  176 (319)
T cd00116          97 GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG  176 (319)
T ss_pred             HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC
Confidence            44444443321236666666666652    122233444 6667777777766532    23344555667777777776


Q ss_pred             Cccc----cCcccccCCCcceeeccccccccc----CccccCCCCCccEEEcccCcceeccccccC-----CCCCCcEEE
Q 005711          384 LSGS----IPLNIVGCFQLLALIVNNNNLSGE----IQPELDALDSLKILDISNNQISGEIPLTLA-----GLKSLEIVD  450 (681)
Q Consensus       384 l~~~----~p~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-----~l~~L~~L~  450 (681)
                      +++.    ++..+...++|+.|++++|.+.+.    +...+..+++|+.|++++|.+++.....+.     ..+.|++|+
T Consensus       177 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~  256 (319)
T cd00116         177 IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLS  256 (319)
T ss_pred             CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEE
Confidence            6632    222333445666666666665432    223345566777777777776643222221     236777777


Q ss_pred             CCCCcCCC----cchhhhhcCCCCCEEEccCCcCccc----CCcccccC-CccceeecccCc
Q 005711          451 FSSNNLSG----SLNDAITKWTNLKYFSIARNKLSGN----LPNWLFSF-QAIQMMDFSTNK  503 (681)
Q Consensus       451 L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l-~~L~~L~ls~n~  503 (681)
                      +++|.++.    .+...+..+++|+++++++|.+...    +...+... ..++++++.+|.
T Consensus       257 l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         257 LSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             ccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence            77777762    2334455567777777777777643    22222223 456666665553

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.65  E-value=1.7e-18  Score=150.01  Aligned_cols=168  Identities=29%  Similarity=0.356  Sum_probs=99.9

Q ss_pred             cccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccC
Q 005711          101 RLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSM  180 (681)
Q Consensus       101 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~  180 (681)
                      .+.++++++.|.||+|.++ .+|..++.+.+|++|++++|+++ .+|.+++.+++|+.|+++-|                
T Consensus        28 gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmn----------------   89 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMN----------------   89 (264)
T ss_pred             cccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchh----------------
Confidence            3556666777777777776 34455777777777777777776 56666666666666655544                


Q ss_pred             CccEEEccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCc
Q 005711          181 NLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNS  260 (681)
Q Consensus       181 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~  260 (681)
                                .+. ..|..|+.++.|+.||+.+|++...                    .+|..|..++.|+.|++++|.
T Consensus        90 ----------rl~-~lprgfgs~p~levldltynnl~e~--------------------~lpgnff~m~tlralyl~dnd  138 (264)
T KOG0617|consen   90 ----------RLN-ILPRGFGSFPALEVLDLTYNNLNEN--------------------SLPGNFFYMTTLRALYLGDND  138 (264)
T ss_pred             ----------hhh-cCccccCCCchhhhhhccccccccc--------------------cCCcchhHHHHHHHHHhcCCC
Confidence                      443 5566666666677776666666532                    334444445555555555555


Q ss_pred             cccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhc
Q 005711          261 VVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQT  320 (681)
Q Consensus       261 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~  320 (681)
                      +. .+|..++++++|+.|.+.+|.+- ..|..++.++.|++|.+.+|.++ .+|..++.+
T Consensus       139 fe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l  195 (264)
T KOG0617|consen  139 FE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANL  195 (264)
T ss_pred             cc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhh
Confidence            54 45555555556666655555554 45555555556666666666555 444444443

>PLN03150 hypothetical protein; Provisional

Probab=99.65  E-value=1e-15  Score=170.39  Aligned_cols=151  Identities=32%  Similarity=0.582  Sum_probs=126.6

Q ss_pred             CCHHhHHHHHHHHhcCCCCCCCCCCCCCCCCC----CCCceeecCC--C--CcEEEEEcCCCCCcccccccccCCCCCCE
Q 005711           39 LNLEDKASLLLFKSLVQDPTQKLSSWVGSNCT----NWTGVACNFQ--T--GHVVSINLTDTSLSGQVHPRLCKLSFLEF  110 (681)
Q Consensus        39 ~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~cc----~w~gv~c~~~--~--~~v~~L~L~~~~l~g~~~~~l~~l~~L~~  110 (681)
                      ...+|.+||+.+|+.+.++..  .+|.++.|+    .|.||.|...  .  .+|+.|+|+++.+.|.+|..+.++++|++
T Consensus       369 t~~~~~~aL~~~k~~~~~~~~--~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~  446 (623)
T PLN03150        369 TLLEEVSALQTLKSSLGLPLR--FGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQS  446 (623)
T ss_pred             cCchHHHHHHHHHHhcCCccc--CCCCCCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCE
Confidence            345677799999999876532  489887774    7999999532  2  25999999999999999999999999999


Q ss_pred             EECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCC
Q 005711          111 LVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFN  190 (681)
Q Consensus       111 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n  190 (681)
                      |+|++|.+.|.+|..++.+++|++|+|++|+++|.+|..++++++|++|+|++| .+.+.+|..++....++..+++.+|
T Consensus       447 L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N-~l~g~iP~~l~~~~~~~~~l~~~~N  525 (623)
T PLN03150        447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN-SLSGRVPAALGGRLLHRASFNFTDN  525 (623)
T ss_pred             EECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCC-cccccCChHHhhccccCceEEecCC
Confidence            999999999999999999999999999999999999999999999999999998 5778888887664346677777777


Q ss_pred             cC
Q 005711          191 SF  192 (681)
Q Consensus       191 ~l  192 (681)
                      ..
T Consensus       526 ~~  527 (623)
T PLN03150        526 AG  527 (623)
T ss_pred             cc
Confidence            64

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.63  E-value=9.4e-18  Score=145.38  Aligned_cols=178  Identities=26%  Similarity=0.466  Sum_probs=88.7

Q ss_pred             CCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEc
Q 005711          396 FQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSI  475 (681)
Q Consensus       396 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  475 (681)
                      ...+.|.+++|+++ .+|+.+..+.+|+.|++.+|+++ .+|..++.+++|+.|+++-|++. ..|..|+.++.|+.||+
T Consensus        33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldl  109 (264)
T KOG0617|consen   33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDL  109 (264)
T ss_pred             hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhc
Confidence            34444455555544 23334444455555555555554 34444455555555555544443 34444555555555555


Q ss_pred             cCCcCcc-cCCcccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cC
Q 005711          476 ARNKLSG-NLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LY  553 (681)
Q Consensus       476 ~~n~l~~-~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~  553 (681)
                      .+|++.. .+|..++.++.|+.|.+++|.|                 . .+|..++++++|+.|.+..|.+. ..|. ++
T Consensus       110 tynnl~e~~lpgnff~m~tlralyl~dndf-----------------e-~lp~dvg~lt~lqil~lrdndll-~lpkeig  170 (264)
T KOG0617|consen  110 TYNNLNENSLPGNFFYMTTLRALYLGDNDF-----------------E-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIG  170 (264)
T ss_pred             cccccccccCCcchhHHHHHHHHHhcCCCc-----------------c-cCChhhhhhcceeEEeeccCchh-hCcHHHH
Confidence            5444432 2344444444444443333333                 2 56666666666666666666665 3444 66


Q ss_pred             CCCCCCEEECCCCcCcccCCccccCCCC---CCeEecccCcceeeC
Q 005711          554 RLRSLRALDLSHNSLTGQIPGNISSLQE---LTLLNLSYNSFSGFV  596 (681)
Q Consensus       554 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~---L~~L~ls~N~l~~~~  596 (681)
                      .++.|+.|++.+|+++ .+|..++++.-   =+++.+.+|++...|
T Consensus       171 ~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pI  215 (264)
T KOG0617|consen  171 DLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPI  215 (264)
T ss_pred             HHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChH
Confidence            6666666666666666 44444444322   233445555554433

>PLN03150 hypothetical protein; Provisional

Probab=99.58  E-value=2.6e-15  Score=167.19  Aligned_cols=115  Identities=37%  Similarity=0.555  Sum_probs=100.8

Q ss_pred             CcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCCCCCeEeccc
Q 005711          511 AVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSY  589 (681)
Q Consensus       511 ~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  589 (681)
                      ...|+|++|.++|.+|..+..+++|+.|+|++|.++|.+|. ++.+++|+.|||++|+++|.+|+.+..+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            35689999999999999999999999999999999999998 99999999999999999999999999999999999999


Q ss_pred             CcceeeCCCCCC--CCCccc-cccCCCCCCCCCCCCCCC
Q 005711          590 NSFSGFVPWKQG--YQKFPG-AFAGNPNLCLESSHGECN  625 (681)
Q Consensus       590 N~l~~~~p~~~~--~~~~~~-~~~gn~~lc~~~~~~~c~  625 (681)
                      |+++|.+|....  ...... .+.||+.+|+.|....|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            999999996422  112222 789999999877656674

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.23  E-value=2.6e-13  Score=139.10  Aligned_cols=172  Identities=29%  Similarity=0.447  Sum_probs=96.0

Q ss_pred             CCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEEC
Q 005711          372 TYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDF  451 (681)
Q Consensus       372 ~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  451 (681)
                      .--...|++.|++. .+|..+..+..|+.+.+..|.+. .+|..+..+..|+++|++.|+++ ..|..+..++ |+.|.+
T Consensus        75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~  150 (722)
T KOG0532|consen   75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIV  150 (722)
T ss_pred             cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEE
Confidence            33456677777776 56666666666666666666554 44555566666666666666665 4455444443 555556


Q ss_pred             CCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccccCCCCCcccccCCccccccCCccccc
Q 005711          452 SSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQ  531 (681)
Q Consensus       452 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~  531 (681)
                      ++|+++ .+|+.++..+.|..||.+.|.+. .+|..+..+.+|+.|.++.|++.                  .+|+++..
T Consensus       151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~------------------~lp~El~~  210 (722)
T KOG0532|consen  151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE------------------DLPEELCS  210 (722)
T ss_pred             ecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh------------------hCCHHHhC
Confidence            666554 44555555555555555555554 44555555555554444444433                  44455442


Q ss_pred             ccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCc
Q 005711          532 LQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLT  569 (681)
Q Consensus       532 l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~  569 (681)
                      | .|..||+|+|+++ .||. |.+|+.|++|-|.+|.+.
T Consensus       211 L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  211 L-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             C-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence            2 3555555555555 4444 555555555555555555

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.16  E-value=4.5e-11  Score=127.58  Aligned_cols=152  Identities=35%  Similarity=0.489  Sum_probs=79.8

Q ss_pred             CccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecc
Q 005711          421 SLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFS  500 (681)
Q Consensus       421 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls  500 (681)
                      +|+.|++++|++. .+|..+..++.|+.|++++|+++ .+|......++|+.|++++|++. .+|..+.....|+.++++
T Consensus       141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~  217 (394)
T COG4886         141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLS  217 (394)
T ss_pred             hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhc
Confidence            5666666666555 33344555666666666666665 33433335556666666666665 455444444455555555


Q ss_pred             cCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCCcCCCCCCCEEECCCCcCcccCCccccCCC
Q 005711          501 TNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQ  580 (681)
Q Consensus       501 ~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  580 (681)
                      +|...                  .++..+.++..+..+.+++|++...+-.++.++++++|++++|.++. ++. +..+.
T Consensus       218 ~N~~~------------------~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~  277 (394)
T COG4886         218 NNSII------------------ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISS-ISS-LGSLT  277 (394)
T ss_pred             CCcce------------------ecchhhhhcccccccccCCceeeeccchhccccccceeccccccccc-ccc-ccccC
Confidence            55321                  34444555555555555555554221124555555555555555552 222 45555


Q ss_pred             CCCeEecccCcceee
Q 005711          581 ELTLLNLSYNSFSGF  595 (681)
Q Consensus       581 ~L~~L~ls~N~l~~~  595 (681)
                      +++.|++++|.+...
T Consensus       278 ~l~~L~~s~n~~~~~  292 (394)
T COG4886         278 NLRELDLSGNSLSNA  292 (394)
T ss_pred             ccCEEeccCcccccc
Confidence            555555555555443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.11  E-value=2.6e-12  Score=131.80  Aligned_cols=170  Identities=28%  Similarity=0.449  Sum_probs=95.2

Q ss_pred             CEEEccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEc
Q 005711          252 TVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDL  331 (681)
Q Consensus       252 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~L  331 (681)
                      ...|++.|++. .+|..+..+..|+.+.+..|.+. .+|..+.++..|.+++++.|+++ ..|..++.++    |+.|-+
T Consensus        78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp----Lkvli~  150 (722)
T KOG0532|consen   78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP----LKVLIV  150 (722)
T ss_pred             hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc----ceeEEE
Confidence            34455555554 45555555555555555555554 45555555666666666666655 4555555554    666666


Q ss_pred             cCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeeccccccccc
Q 005711          332 SHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGE  411 (681)
Q Consensus       332 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~  411 (681)
                      ++|+++ .+|..++....|..|+.+.|.+. .+|..++++.+|+.|.+..|++. .+|..+. .-.|..|+++.|+++ .
T Consensus       151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~  225 (722)
T KOG0532|consen  151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-Y  225 (722)
T ss_pred             ecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-e
Confidence            666665 45555555556666666666654 34455566666666666666655 3444444 334555555555554 4


Q ss_pred             CccccCCCCCccEEEcccCcce
Q 005711          412 IQPELDALDSLKILDISNNQIS  433 (681)
Q Consensus       412 ~~~~~~~l~~L~~L~Ls~n~l~  433 (681)
                      +|..|.+|..|++|-|.+|.+.
T Consensus       226 iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  226 LPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             cchhhhhhhhheeeeeccCCCC
Confidence            4555555555555555555554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.10  E-value=1.1e-10  Score=124.49  Aligned_cols=200  Identities=36%  Similarity=0.509  Sum_probs=114.1

Q ss_pred             EEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCC-CCCEEEccCCcCccccCcccccCCCcceeecccc
Q 005711          328 LLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLT-YLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNN  406 (681)
Q Consensus       328 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n  406 (681)
                      .++++.+.+...+. .+...+.++.|++.+|.++ .++......+ +|+.|++++|.+. .+|.                
T Consensus        97 ~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~----------------  157 (394)
T COG4886          97 SLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPS----------------  157 (394)
T ss_pred             eeeccccccccCch-hhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhh----------------
Confidence            35555555532222 2333455666666666665 3444444443 6666666666655 2332                


Q ss_pred             cccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCc
Q 005711          407 NLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPN  486 (681)
Q Consensus       407 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~  486 (681)
                              .+..++.|+.|++++|++. .+|...+..+.|+.|++++|+++ .+|........|+++.+++|... ..+.
T Consensus       158 --------~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~  226 (394)
T COG4886         158 --------PLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLS  226 (394)
T ss_pred             --------hhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecch
Confidence                    3445566666666666665 33433335566666666666665 44444444445666666666432 3444


Q ss_pred             ccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCCcCCCCCCCEEECCCC
Q 005711          487 WLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHN  566 (681)
Q Consensus       487 ~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L~Ls~N  566 (681)
                      .+..+..+..+.+.+|++.                  .++..++.++++++|++++|.++ .++.++.+.+++.|++++|
T Consensus       227 ~~~~~~~l~~l~l~~n~~~------------------~~~~~~~~l~~l~~L~~s~n~i~-~i~~~~~~~~l~~L~~s~n  287 (394)
T COG4886         227 SLSNLKNLSGLELSNNKLE------------------DLPESIGNLSNLETLDLSNNQIS-SISSLGSLTNLRELDLSGN  287 (394)
T ss_pred             hhhhcccccccccCCceee------------------eccchhccccccceecccccccc-ccccccccCccCEEeccCc
Confidence            4555555555555555443                  33556666777777777777777 4444777777888888887


Q ss_pred             cCcccCCccc
Q 005711          567 SLTGQIPGNI  576 (681)
Q Consensus       567 ~l~~~~p~~l  576 (681)
                      .++...|...
T Consensus       288 ~~~~~~~~~~  297 (394)
T COG4886         288 SLSNALPLIA  297 (394)
T ss_pred             cccccchhhh
Confidence            7776655543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.04  E-value=4.7e-11  Score=113.26  Aligned_cols=64  Identities=34%  Similarity=0.431  Sum_probs=36.7

Q ss_pred             ccccceeecCCCcCcccCCCcCCCCCCCEEECCCCcCcccC-CccccCCCCCCeEecccCcceeeC
Q 005711          532 LQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQI-PGNISSLQELTLLNLSYNSFSGFV  596 (681)
Q Consensus       532 l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ls~N~l~~~~  596 (681)
                      +-+++.|.|++|.+. ....++.+-+|..||+++|++...- -..+++++.|+.+.+.+||+.+.+
T Consensus       351 LGNIKtL~La~N~iE-~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  351 LGNIKTLKLAQNKIE-TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             hcCEeeeehhhhhHh-hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            445556666666554 3334555566666666666654221 124566677777777777776654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.97  E-value=2.5e-10  Score=108.35  Aligned_cols=129  Identities=25%  Similarity=0.350  Sum_probs=78.5

Q ss_pred             CCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeec
Q 005711          420 DSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDF  499 (681)
Q Consensus       420 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l  499 (681)
                      ..|+.+||++|.++ .+..+..-.|+++.|++++|.+...  ..+..+++|+.|||++|.++ .+..|-..+-+++.|.+
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence            45566666666655 3444555556666666666665522  12555666666666666655 34444445555556665


Q ss_pred             ccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCC--CcCCCCCCCEEECCCCcCccc
Q 005711          500 STNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVP--GLYRLRSLRALDLSHNSLTGQ  571 (681)
Q Consensus       500 s~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip--~~~~l~~L~~L~Ls~N~l~~~  571 (681)
                      ++|.+.                   --.+++.+-+|..||+++|++.....  .+++++-|+.+.|.+|.+.+.
T Consensus       360 a~N~iE-------------------~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  360 AQNKIE-------------------TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             hhhhHh-------------------hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            555442                   12346667788888888888764433  278888888888888888843

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.97  E-value=7.1e-11  Score=114.83  Aligned_cols=67  Identities=21%  Similarity=0.230  Sum_probs=30.5

Q ss_pred             hhccCCCCCEEEccCCccccC----CChhhcccCcccEEecCCCccccc----cCccccCCCCCcEEeccCCCcc
Q 005711          244 FAASAMSLTVLKLDNNSVVGG----IPTCIASLQALTHLNLSHNHLNYE----ISPRLVFFEKLLLLDLSFNDLS  310 (681)
Q Consensus       244 ~~~~~~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~  310 (681)
                      .+...+.|+.+.++.|.+...    ....+..+++|+.|||.+|.++..    +...+..+++|+.+++++|.+.
T Consensus       180 ~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  180 AFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE  254 (382)
T ss_pred             HHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence            344445555555555544311    112234455555555555555422    1222334445555555555544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.96  E-value=9.9e-11  Score=113.84  Aligned_cols=42  Identities=24%  Similarity=0.093  Sum_probs=19.2

Q ss_pred             CCCCCcEEeccCCCccCCCChhhhh-cccCCCccEEEccCCCC
Q 005711          295 FFEKLLLLDLSFNDLSGPLPSKIAQ-TTEKAGLVLLDLSHNRF  336 (681)
Q Consensus       295 ~l~~L~~L~L~~n~l~~~~p~~~~~-~~~~~~L~~L~Ls~n~l  336 (681)
                      .+++|++++||+|.+....++.+.. +.++..|+.|+|.+|.+
T Consensus        90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl  132 (382)
T KOG1909|consen   90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGL  132 (382)
T ss_pred             cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCC
Confidence            3445555555555554333333322 12233455555555544

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=2.1e-10  Score=114.64  Aligned_cols=216  Identities=25%  Similarity=0.243  Sum_probs=103.4

Q ss_pred             ccCCCCCCEEEccCCCCCCcCC-ccccCCCCCCEeeCCCCCCCCccCC--chhccccCCccEEEccCCcCccccCccc-c
Q 005711          126 FGGLSGLKTLDLSYNKFVGVVP-DAIMKLRNLRELILKGNPELGGVFP--GWVGNFSMNLEKLDFSFNSFCGEIPESL-Y  201 (681)
Q Consensus       126 ~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~~~~~~~p--~~l~~l~~~L~~L~L~~n~l~~~~p~~l-~  201 (681)
                      =+++++|+...|.+........ .....|++++.|||+.| ++....|  .....+ ++|+.|+++.|.+.....+.. .
T Consensus       117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqL-p~Le~LNls~Nrl~~~~~s~~~~  194 (505)
T KOG3207|consen  117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQL-PSLENLNLSSNRLSNFISSNTTL  194 (505)
T ss_pred             hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhc-ccchhcccccccccCCccccchh
Confidence            3466777777777766542111 24556777777777776 3332211  112333 566666666666542211111 1


Q ss_pred             CCCCCCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChhhcccCcccEEecC
Q 005711          202 YLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLS  281 (681)
Q Consensus       202 ~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  281 (681)
                      .+++|+.|.++.|.++..                    .+-.....+++|+.|+++.|............++.|+.|+|+
T Consensus       195 ~l~~lK~L~l~~CGls~k--------------------~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs  254 (505)
T KOG3207|consen  195 LLSHLKQLVLNSCGLSWK--------------------DVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLS  254 (505)
T ss_pred             hhhhhheEEeccCCCCHH--------------------HHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhcccc
Confidence            344555555555555411                    011122334455555555553222222223334455555555


Q ss_pred             CCcccccc-CccccCCCCCcEEeccCCCccCC-CCh--hhhhcccCCCccEEEccCCCCcCC-CcccccCCCCCCEEecc
Q 005711          282 HNHLNYEI-SPRLVFFEKLLLLDLSFNDLSGP-LPS--KIAQTTEKAGLVLLDLSHNRFSGE-IPLKITELKSLQALFLS  356 (681)
Q Consensus       282 ~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~-~p~--~~~~~~~~~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~  356 (681)
                      +|++.... -...+.++.|+.|+++.+.+... +|+  .......+++|++|+++.|++... .-..+..+++|+.|.+.
T Consensus       255 ~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~  334 (505)
T KOG3207|consen  255 NNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRIT  334 (505)
T ss_pred             CCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcc
Confidence            55543211 12334555555555555554421 111  112223344777788888777421 11233445677777777


Q ss_pred             CCccccc
Q 005711          357 NNLLIGE  363 (681)
Q Consensus       357 ~n~l~~~  363 (681)
                      .|.++.+
T Consensus       335 ~n~ln~e  341 (505)
T KOG3207|consen  335 LNYLNKE  341 (505)
T ss_pred             ccccccc
Confidence            7777543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=2.9e-10  Score=113.66  Aligned_cols=60  Identities=27%  Similarity=0.214  Sum_probs=32.0

Q ss_pred             CccEEEccCCCCcCCCc--ccccCCCCCCEEeccCCccccc--cccccCCCCCCCEEEccCCcCc
Q 005711          325 GLVLLDLSHNRFSGEIP--LKITELKSLQALFLSNNLLIGE--IPARIGNLTYLQVIDLSHNMLS  385 (681)
Q Consensus       325 ~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~Ls~n~l~  385 (681)
                      +|+.+.|.+..+.. .+  .....+++++.|+|+.|-+...  +......+++|+.|+++.|++.
T Consensus       122 kL~~IsLdn~~V~~-~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~  185 (505)
T KOG3207|consen  122 KLREISLDNYRVED-AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS  185 (505)
T ss_pred             hhhheeecCccccc-cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccccc
Confidence            56666666665542 22  2334566666666666655432  1222345566666666666654

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.88  E-value=2.5e-09  Score=122.06  Aligned_cols=104  Identities=31%  Similarity=0.356  Sum_probs=48.7

Q ss_pred             CCCEEECCCCc--CCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccE
Q 005711          107 FLEFLVLSSNA--FTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEK  184 (681)
Q Consensus       107 ~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~  184 (681)
                      .|++|-+..|.  +....+..|..++.|++|||++|.=-+.+|..++.+-+||||++++..+  ..+|..++++ .+|.+
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I--~~LP~~l~~L-k~L~~  622 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGI--SHLPSGLGNL-KKLIY  622 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCc--cccchHHHHH-Hhhhe
Confidence            44555444443  2222233344455555555555443344555555555555555555422  2445555555 45555


Q ss_pred             EEccCCcCccccCccccCCCCCCEEEccC
Q 005711          185 LDFSFNSFCGEIPESLYYLKSLKHLDLEK  213 (681)
Q Consensus       185 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  213 (681)
                      |++..+.-...+|.....+++|++|.+..
T Consensus       623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  623 LNLEVTGRLESIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             eccccccccccccchhhhcccccEEEeec
Confidence            55554443333333344455555555443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.87  E-value=2e-09  Score=98.49  Aligned_cols=105  Identities=31%  Similarity=0.355  Sum_probs=24.7

Q ss_pred             cEEEEEcCCCCCccccccccc-CCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccc-cCCCCCCEee
Q 005711           83 HVVSINLTDTSLSGQVHPRLC-KLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAI-MKLRNLRELI  160 (681)
Q Consensus        83 ~v~~L~L~~~~l~g~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~  160 (681)
                      +.++|+|+++.+...  ..++ .+.+|+.|||++|.++.. . .+..+++|++|++++|+++. ++..+ ..+++|++|+
T Consensus        20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELY   94 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred             ccccccccccccccc--cchhhhhcCCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEE
Confidence            345555555555421  2233 345555555555555532 1 24455555555555555552 22223 2355555555


Q ss_pred             CCCCCCCCccCCchhccccCCccEEEccCCcCc
Q 005711          161 LKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFC  193 (681)
Q Consensus       161 L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~  193 (681)
                      +++|++..-.--..+..+ ++|++|++.+|.++
T Consensus        95 L~~N~I~~l~~l~~L~~l-~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   95 LSNNKISDLNELEPLSSL-PKLRVLSLEGNPVC  126 (175)
T ss_dssp             -TTS---SCCCCGGGGG--TT--EEE-TT-GGG
T ss_pred             CcCCcCCChHHhHHHHcC-CCcceeeccCCccc
Confidence            555533222222233334 44555555555444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.81  E-value=3.3e-09  Score=97.02  Aligned_cols=54  Identities=31%  Similarity=0.361  Sum_probs=17.7

Q ss_pred             ccccceeecCCCcCccc--CCCcCCCCCCCEEECCCCcCcccCCc----cccCCCCCCeEe
Q 005711          532 LQGLEYLNLSFNFLDGQ--VPGLYRLRSLRALDLSHNSLTGQIPG----NISSLQELTLLN  586 (681)
Q Consensus       532 l~~L~~L~Ls~N~l~~~--ip~~~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L~~L~  586 (681)
                      +++|++|++++|++...  +-.+..+++|+.|++.+|.++.. +.    .+..+++|+.||
T Consensus        87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEET
T ss_pred             CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeC
Confidence            44555555555554421  11144455555555555555422 21    134455666655

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.78  E-value=4.8e-09  Score=119.77  Aligned_cols=110  Identities=26%  Similarity=0.292  Sum_probs=88.0

Q ss_pred             cCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCC--CCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccC
Q 005711          103 CKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNK--FVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSM  180 (681)
Q Consensus       103 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~  180 (681)
                      .+....+...+.+|.+.. ++.. ..+++|++|-+..|.  +....+..|..++.|++|||++| .-.+.+|..++++ -
T Consensus       520 ~~~~~~rr~s~~~~~~~~-~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~-~~l~~LP~~I~~L-i  595 (889)
T KOG4658|consen  520 KSWNSVRRMSLMNNKIEH-IAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGN-SSLSKLPSSIGEL-V  595 (889)
T ss_pred             cchhheeEEEEeccchhh-ccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCC-CccCcCChHHhhh-h
Confidence            334567888888887753 3332 245589999999996  55344455888999999999998 5668899999999 8


Q ss_pred             CccEEEccCCcCccccCccccCCCCCCEEEccCccCc
Q 005711          181 NLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLT  217 (681)
Q Consensus       181 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  217 (681)
                      +||+|+++++.+. .+|..++++++|.+|++..+.-.
T Consensus       596 ~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l  631 (889)
T KOG4658|consen  596 HLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRL  631 (889)
T ss_pred             hhhcccccCCCcc-ccchHHHHHHhhheecccccccc
Confidence            9999999999998 89999999999999999886644

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.77  E-value=1.6e-09  Score=115.88  Aligned_cols=238  Identities=29%  Similarity=0.334  Sum_probs=125.0

Q ss_pred             CccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecc
Q 005711          325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVN  404 (681)
Q Consensus       325 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~  404 (681)
                      .++.+.+..|.+.. +-..+..+++|+.|++.+|++.... ..+..+++|++|++++|.++...+               
T Consensus        73 ~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~~---------------  135 (414)
T KOG0531|consen   73 SLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLEG---------------  135 (414)
T ss_pred             hHHhhccchhhhhh-hhcccccccceeeeeccccchhhcc-cchhhhhcchheeccccccccccc---------------
Confidence            45556666666653 2223455666667777777665432 124556666666666666654322               


Q ss_pred             cccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcch-hhhhcCCCCCEEEccCCcCccc
Q 005711          405 NNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLN-DAITKWTNLKYFSIARNKLSGN  483 (681)
Q Consensus       405 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~  483 (681)
                                 +..++.|+.|++++|.++..  ..+..++.|+.+++++|.+...-+ . ...+.+++.+.+.+|.+.. 
T Consensus       136 -----------l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~-  200 (414)
T KOG0531|consen  136 -----------LSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE-  200 (414)
T ss_pred             -----------hhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc-
Confidence                       22233355555555555421  223334555555555555542222 1 2444555555555555431 


Q ss_pred             CCcccccCCccceeecccCccccCCC--C-----CcccccCCccccccCCcccccccccceeecCCCcCcccCCCcCCCC
Q 005711          484 LPNWLFSFQAIQMMDFSTNKFMGFIP--D-----AVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLR  556 (681)
Q Consensus       484 ~p~~~~~l~~L~~L~ls~n~~~~~~p--~-----~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~  556 (681)
                       ...+..+..+..+++..|.++..-+  .     ...+++++|.+. .++..+..+..+..|+++.|++. ....+....
T Consensus       201 -i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~-~~~~~~~~~  277 (414)
T KOG0531|consen  201 -IEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS-NLEGLERLP  277 (414)
T ss_pred             -ccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccc-cccccccccccccccchhhcccc-ccccccccc
Confidence             1222233333333444444432111  0     234555555555 44466667778888888888776 333355566


Q ss_pred             CCCEEECCCCcCccc---CCcc-ccCCCCCCeEecccCcceeeCC
Q 005711          557 SLRALDLSHNSLTGQ---IPGN-ISSLQELTLLNLSYNSFSGFVP  597 (681)
Q Consensus       557 ~L~~L~Ls~N~l~~~---~p~~-l~~l~~L~~L~ls~N~l~~~~p  597 (681)
                      .+..+....|.+...   .... ......++.+.+.+|+.....+
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  278 KLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             hHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence            677777777776522   1111 3455777888888888766543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.74  E-value=6.3e-09  Score=78.10  Aligned_cols=60  Identities=43%  Similarity=0.504  Sum_probs=52.1

Q ss_pred             CCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCC
Q 005711          106 SFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNP  165 (681)
Q Consensus       106 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~  165 (681)
                      ++|++|++++|+++...+..|.++++|++|++++|.++...|.+|.++++|++|++++|+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            478899999999987777888999999999999999987778889999999999998884

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.72  E-value=8.3e-09  Score=77.44  Aligned_cols=60  Identities=42%  Similarity=0.519  Sum_probs=49.4

Q ss_pred             cccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccCcc
Q 005711          533 QGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSF  592 (681)
Q Consensus       533 ~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l  592 (681)
                      ++|++|++++|+++...+. +.++++|++|++++|+++...|..|..+++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4688888888888855555 77888888888888888877788888888888888888875

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.60  E-value=6.2e-09  Score=111.37  Aligned_cols=110  Identities=30%  Similarity=0.263  Sum_probs=56.4

Q ss_pred             CCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCcc
Q 005711          104 KLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLE  183 (681)
Q Consensus       104 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~  183 (681)
                      .+..++.+++..|.+.. +-..+..+++|+.|++.+|++..+ ...+..+++|++|++++|.+ +...  .+..+ +.|+
T Consensus        70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I-~~i~--~l~~l-~~L~  143 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKI-TKLE--GLSTL-TLLK  143 (414)
T ss_pred             HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccc-cccc--chhhc-cchh
Confidence            34555555566665553 223355666667777777666633 22255566666666666632 1111  12222 4455


Q ss_pred             EEEccCCcCccccCccccCCCCCCEEEccCccCccccc
Q 005711          184 KLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVH  221 (681)
Q Consensus       184 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~  221 (681)
                      .|++++|.++..  ..+..++.|+.+++++|.+....+
T Consensus       144 ~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~  179 (414)
T KOG0531|consen  144 ELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIEN  179 (414)
T ss_pred             hheeccCcchhc--cCCccchhhhcccCCcchhhhhhh
Confidence            666666655421  234445555666666655554433

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.40  E-value=4.4e-07  Score=62.18  Aligned_cols=38  Identities=39%  Similarity=0.838  Sum_probs=28.3

Q ss_pred             HHhHHHHHHHHhcCCC-CCCCCCCCC-C--CCCCCCCceeec
Q 005711           41 LEDKASLLLFKSLVQD-PTQKLSSWV-G--SNCTNWTGVACN   78 (681)
Q Consensus        41 ~~~~~~l~~~~~~~~~-~~~~~~~w~-~--~~cc~w~gv~c~   78 (681)
                      .+|.+||++||+++.. +.+.+.+|. .  .+||.|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence            4677899999999995 568899994 2  699999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.36  E-value=1.2e-08  Score=108.09  Aligned_cols=180  Identities=26%  Similarity=0.320  Sum_probs=110.8

Q ss_pred             CcccccCCCcceeecccccccccCccccCC-CCCccEEEcccCcce----------eccccccCCCCCCcEEECCCCcCC
Q 005711          389 PLNIVGCFQLLALIVNNNNLSGEIQPELDA-LDSLKILDISNNQIS----------GEIPLTLAGLKSLEIVDFSSNNLS  457 (681)
Q Consensus       389 p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~----------~~~p~~~~~l~~L~~L~L~~n~l~  457 (681)
                      |..+....+|+.|.+.++.+...  ..+.. -..|+.|.-. |.+.          |.+...+ -...|.+.+.+.|.+.
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~  177 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNSP-VWNKLATASFSYNRLV  177 (1096)
T ss_pred             CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccch-hhhhHhhhhcchhhHH
Confidence            66677777888888887776531  01111 1123333222 1211          1111110 0235666777777776


Q ss_pred             CcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccccCCCCCcccccCCccccccCCcc-cccccccc
Q 005711          458 GSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKG-LFQLQGLE  536 (681)
Q Consensus       458 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~-l~~l~~L~  536 (681)
                       .....+.-++.++.|+|++|++...  ..+.+++.|+.||+++|.+.                  .+|.- ...++ |+
T Consensus       178 -~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~------------------~vp~l~~~gc~-L~  235 (1096)
T KOG1859|consen  178 -LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR------------------HVPQLSMVGCK-LQ  235 (1096)
T ss_pred             -hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc------------------cccccchhhhh-he
Confidence             5556666677788888888887632  25666677777776666654                  33421 12344 88


Q ss_pred             eeecCCCcCcccCCCcCCCCCCCEEECCCCcCcccCCc-cccCCCCCCeEecccCcceee
Q 005711          537 YLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPG-NISSLQELTLLNLSYNSFSGF  595 (681)
Q Consensus       537 ~L~Ls~N~l~~~ip~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~ls~N~l~~~  595 (681)
                      .|+|++|.++ ..-.+.++.+|+-||+++|-+++...- -+..+..|+.|++.+||+.|.
T Consensus       236 ~L~lrnN~l~-tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  236 LLNLRNNALT-TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             eeeecccHHH-hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            8999999887 566677888999999999988765321 235567888899999998764

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=1.3e-08  Score=96.93  Aligned_cols=150  Identities=23%  Similarity=0.240  Sum_probs=64.3

Q ss_pred             CCEEEccCCCCCCc-CCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCCc-Ccc-ccCccccCCCCCCE
Q 005711          132 LKTLDLSYNKFVGV-VPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNS-FCG-EIPESLYYLKSLKH  208 (681)
Q Consensus       132 L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~-l~~-~~p~~l~~l~~L~~  208 (681)
                      |++||||...++.. +-..+..+.+|+.|.+.++ .+...+...+++- .+|+.|+++.++ ++. ..---+.+++.|..
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~-~LdD~I~~~iAkN-~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGL-RLDDPIVNTIAKN-SNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhcccccc-ccCcHHHHHHhcc-ccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            44455544444311 1112334444444444444 2333333344443 455555555443 221 01112456777777


Q ss_pred             EEccCccCcccccC-----cCCcccEEECCCCCC---ccccchhhccCCCCCEEEccCCc-cccCCChhhcccCcccEEe
Q 005711          209 LDLEKNNLTGNVHD-----FYQSLLVLNLGSNRF---SGTLPCFAASAMSLTVLKLDNNS-VVGGIPTCIASLQALTHLN  279 (681)
Q Consensus       209 L~L~~n~l~~~~~~-----~~~~L~~L~L~~n~l---~~~~~~~~~~~~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~  279 (681)
                      |+++.+.++.....     .-++|+.|+++++.-   ...+..-...+++|..|||++|. ++......|.+++.|++|.
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS  344 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS  344 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence            77777766543221     122355555554421   11122223445555555555542 2212222333444444444


Q ss_pred             cCCC
Q 005711          280 LSHN  283 (681)
Q Consensus       280 L~~n  283 (681)
                      ++.|
T Consensus       345 lsRC  348 (419)
T KOG2120|consen  345 LSRC  348 (419)
T ss_pred             hhhh
Confidence            4444

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.23  E-value=6.3e-08  Score=81.78  Aligned_cols=137  Identities=26%  Similarity=0.323  Sum_probs=86.2

Q ss_pred             CCCcEEECCCCcCCCcchhh---hhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccccCCCCCcccccCCcc
Q 005711          444 KSLEIVDFSSNNLSGSLNDA---ITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNL  520 (681)
Q Consensus       444 ~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~  520 (681)
                      ..+..+||++|++- -+++.   +.....|+..+|++|.+. ..|+.+                +...|..+.++|++|+
T Consensus        27 kE~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kf----------------t~kf~t~t~lNl~~ne   88 (177)
T KOG4579|consen   27 KELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKF----------------TIKFPTATTLNLANNE   88 (177)
T ss_pred             HHhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHH----------------hhccchhhhhhcchhh
Confidence            34556677777664 23333   334456666777777776 334322                2223444556666666


Q ss_pred             ccccCCcccccccccceeecCCCcCcccCCCcCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccCcceeeCCCCC
Q 005711          521 LHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQ  600 (681)
Q Consensus       521 l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~  600 (681)
                      ++ .+|+++..++.|+.|+++.|.+......+..+.++-.||..+|.+. +||-.+---+..-..++.++++.+..|.+.
T Consensus        89 is-dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~kl  166 (177)
T KOG4579|consen   89 IS-DVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKL  166 (177)
T ss_pred             hh-hchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcccc
Confidence            66 8888888899999999999988843333666888888888888877 566543222233344557777777666443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=3.1e-08  Score=94.39  Aligned_cols=198  Identities=19%  Similarity=0.136  Sum_probs=129.7

Q ss_pred             cEEEEEcCCCCCccc-ccccccCC-CCCCEEECCCCcCCcc-ccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEe
Q 005711           83 HVVSINLTDTSLSGQ-VHPRLCKL-SFLEFLVLSSNAFTGR-ISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLREL  159 (681)
Q Consensus        83 ~v~~L~L~~~~l~g~-~~~~l~~l-~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  159 (681)
                      .|..+.+....+..+ +.+.+.-+ +.|++||||+..++.. +-..++.|.+|+.|.|.++++...+-..+..-.+|+.|
T Consensus       160 gV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~l  239 (419)
T KOG2120|consen  160 GVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRL  239 (419)
T ss_pred             CeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceee
Confidence            356666654433332 22222222 4688999998887644 44456788999999999999988888888888999999


Q ss_pred             eCCCCCCCCccC-CchhccccCCccEEEccCCcCccccCcc-ccC-CCCCCEEEccCccCc------ccccCcCCcccEE
Q 005711          160 ILKGNPELGGVF-PGWVGNFSMNLEKLDFSFNSFCGEIPES-LYY-LKSLKHLDLEKNNLT------GNVHDFYQSLLVL  230 (681)
Q Consensus       160 ~L~~n~~~~~~~-p~~l~~l~~~L~~L~L~~n~l~~~~p~~-l~~-l~~L~~L~L~~n~l~------~~~~~~~~~L~~L  230 (681)
                      +++.+.-++..- .--+.++ +.|+.|+++.|.+....-.. ... -++|+.|++++..-.      .......++|.+|
T Consensus       240 nlsm~sG~t~n~~~ll~~sc-s~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L  318 (419)
T KOG2120|consen  240 NLSMCSGFTENALQLLLSSC-SRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL  318 (419)
T ss_pred             ccccccccchhHHHHHHHhh-hhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee
Confidence            998874333211 1224455 78999999998876433221 122 257888888876421      1223345678999


Q ss_pred             ECCCCC-CccccchhhccCCCCCEEEccCCccccCCChhh---cccCcccEEecCCC
Q 005711          231 NLGSNR-FSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCI---ASLQALTHLNLSHN  283 (681)
Q Consensus       231 ~L~~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l---~~l~~L~~L~L~~n  283 (681)
                      ||++|. ++......+..++.|++|.++.|..  .+|..+   ...++|.+|++.++
T Consensus       319 DLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  319 DLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             ccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            998774 4545556778889999999999854  455543   45567777776554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.17  E-value=4.8e-08  Score=103.65  Aligned_cols=196  Identities=29%  Similarity=0.286  Sum_probs=123.7

Q ss_pred             CCCCEEEccCCccccCC-ChhhcccCcccEEecCCCccccccCccccCC-CCCcEEeccCCCc----------cCCCChh
Q 005711          249 MSLTVLKLDNNSVVGGI-PTCIASLQALTHLNLSHNHLNYEISPRLVFF-EKLLLLDLSFNDL----------SGPLPSK  316 (681)
Q Consensus       249 ~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l----------~~~~p~~  316 (681)
                      ++++.|.+-.-.-.+.. |-.+..+.+|++|.+.++.+...  ..+..+ ..|+.|.-. |.+          .|.+...
T Consensus        84 qkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns  160 (1096)
T KOG1859|consen   84 QKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNS  160 (1096)
T ss_pred             hhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccc
Confidence            34444444333322222 55677888999999998887631  111111 122222211 111          1122111


Q ss_pred             hhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCC
Q 005711          317 IAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCF  396 (681)
Q Consensus       317 ~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~  396 (681)
                      +..    -.|...+.++|.+. .+...+.-++.|+.|+|++|+++..  +.+..++.|++|||++|.+.-..-....+|.
T Consensus       161 ~~W----n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~  233 (1096)
T KOG1859|consen  161 PVW----NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK  233 (1096)
T ss_pred             hhh----hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh
Confidence            111    15778888899887 5666677788999999999998754  3678889999999999998743323344555


Q ss_pred             CcceeecccccccccCccccCCCCCccEEEcccCcceeccc-cccCCCCCCcEEECCCCcCC
Q 005711          397 QLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIP-LTLAGLKSLEIVDFSSNNLS  457 (681)
Q Consensus       397 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~  457 (681)
                       |..|.+.+|.++...  .+.++.+|+.||+++|-+.+--. ..+..+..|..|.|.+|.+-
T Consensus       234 -L~~L~lrnN~l~tL~--gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  234 -LQLLNLRNNALTTLR--GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             -heeeeecccHHHhhh--hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence             888899988876432  35678888899999988765321 22445677888888888875

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.02  E-value=1.6e-06  Score=81.83  Aligned_cols=16  Identities=19%  Similarity=0.090  Sum_probs=9.8

Q ss_pred             CCCCCCEEEccCccCc
Q 005711          202 YLKSLKHLDLEKNNLT  217 (681)
Q Consensus       202 ~l~~L~~L~L~~n~l~  217 (681)
                      +-|.|+......|++.
T Consensus       155 ~kp~Le~vicgrNRle  170 (388)
T COG5238         155 DKPKLEVVICGRNRLE  170 (388)
T ss_pred             cCCCceEEEeccchhc
Confidence            3456666666666654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.01  E-value=2.1e-06  Score=82.26  Aligned_cols=86  Identities=24%  Similarity=0.290  Sum_probs=45.2

Q ss_pred             CCCCCCEEECCCCcCCc--cccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCC
Q 005711          104 KLSFLEFLVLSSNAFTG--RISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMN  181 (681)
Q Consensus       104 ~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~  181 (681)
                      ..+.++.+||.+|.|++  .+...+.+++.|++|+|+.|.+...+-..-..+.+|++|.|.+..+--......+..+ +.
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~l-P~  147 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDL-PK  147 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcc-hh
Confidence            45667777777777653  2445556777777777777776633221112344566666655422111222233333 44


Q ss_pred             ccEEEccCC
Q 005711          182 LEKLDFSFN  190 (681)
Q Consensus       182 L~~L~L~~n  190 (681)
                      ++.|.++.|
T Consensus       148 vtelHmS~N  156 (418)
T KOG2982|consen  148 VTELHMSDN  156 (418)
T ss_pred             hhhhhhccc
Confidence            555555555

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.95  E-value=7e-07  Score=75.59  Aligned_cols=114  Identities=17%  Similarity=0.243  Sum_probs=54.3

Q ss_pred             CCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccccCCCCCcccccCCccccc
Q 005711          444 KSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHG  523 (681)
Q Consensus       444 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g  523 (681)
                      ..|...+|++|.+....+..-..++.++.+++++|+++ .+|..+..++.|+.++++.|.+.                  
T Consensus        53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~------------------  113 (177)
T KOG4579|consen   53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN------------------  113 (177)
T ss_pred             ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc------------------
Confidence            34444455555544222222223344555555555554 44444555555555555554443                  


Q ss_pred             cCCcccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCcccc
Q 005711          524 TIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNIS  577 (681)
Q Consensus       524 ~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~  577 (681)
                      ..|..+..+.++-.|+..+|.+. .||. +..-+..-..++.++.+.+.-|..++
T Consensus       114 ~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klq  167 (177)
T KOG4579|consen  114 AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQ  167 (177)
T ss_pred             cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccccc
Confidence            34455555666666666666555 3443 33223333334455556655554433

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.84  E-value=5.8e-06  Score=78.21  Aligned_cols=202  Identities=27%  Similarity=0.307  Sum_probs=91.0

Q ss_pred             hcccCcccEEecCCCccccccCccc----cCCCCCcEEeccCCCccCCC----Chhh----hhcccCCCccEEEccCCCC
Q 005711          269 IASLQALTHLNLSHNHLNYEISPRL----VFFEKLLLLDLSFNDLSGPL----PSKI----AQTTEKAGLVLLDLSHNRF  336 (681)
Q Consensus       269 l~~l~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L~L~~n~l~~~~----p~~~----~~~~~~~~L~~L~Ls~n~l  336 (681)
                      +..+..+..++|++|.+...-..++    .+-.+|+..+++.- ++|..    ++.+    ..+.+++.|+..+||+|.+
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf  104 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF  104 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence            3446777888888887765443333    33455666655542 22222    2211    1122334555555555555


Q ss_pred             cCCCcccc----cCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccC
Q 005711          337 SGEIPLKI----TELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEI  412 (681)
Q Consensus       337 ~~~~p~~l----~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~  412 (681)
                      ....|..+    +.-+.|.+|.+++|.+.-.--..++.  .|.+  +..|       .....-+.|+++....|++..-.
T Consensus       105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~--la~n-------KKaa~kp~Le~vicgrNRlengs  173 (388)
T COG5238         105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFH--LAYN-------KKAADKPKLEVVICGRNRLENGS  173 (388)
T ss_pred             CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHH--HHHH-------hhhccCCCceEEEeccchhccCc
Confidence            44433322    23344555555555432110000110  0000  0000       00112334444444444443110


Q ss_pred             ----ccccCCCCCccEEEcccCcceecc-----ccccCCCCCCcEEECCCCcCCCc----chhhhhcCCCCCEEEccCCc
Q 005711          413 ----QPELDALDSLKILDISNNQISGEI-----PLTLAGLKSLEIVDFSSNNLSGS----LNDAITKWTNLKYFSIARNK  479 (681)
Q Consensus       413 ----~~~~~~l~~L~~L~Ls~n~l~~~~-----p~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~  479 (681)
                          ...+..-..|+.+.+..|.+.-.-     -..+..+.+|+.||+.+|-++-.    +..++..++.|+.|.+.+|-
T Consensus       174 ~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl  253 (388)
T COG5238         174 KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL  253 (388)
T ss_pred             HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence                111222245666666666654221     12234566777777777776622    23344556667777777776


Q ss_pred             Ccc
Q 005711          480 LSG  482 (681)
Q Consensus       480 l~~  482 (681)
                      ++.
T Consensus       254 ls~  256 (388)
T COG5238         254 LSN  256 (388)
T ss_pred             hcc
Confidence            654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.84  E-value=7.6e-06  Score=78.49  Aligned_cols=60  Identities=30%  Similarity=0.349  Sum_probs=37.3

Q ss_pred             cccccccceeecCCCcCcccC--CCcCCCCCCCEEECCCCcCcccCCc------cccCCCCCCeEecc
Q 005711          529 LFQLQGLEYLNLSFNFLDGQV--PGLYRLRSLRALDLSHNSLTGQIPG------NISSLQELTLLNLS  588 (681)
Q Consensus       529 l~~l~~L~~L~Ls~N~l~~~i--p~~~~l~~L~~L~Ls~N~l~~~~p~------~l~~l~~L~~L~ls  588 (681)
                      ...++.+..|+|+.|++....  .++..+++|..|.+++|.+....-.      -++.++.+++|+=+
T Consensus       220 se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs  287 (418)
T KOG2982|consen  220 SEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS  287 (418)
T ss_pred             CCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence            344556667788888776543  2366778888888888877644322      13556666766543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.70  E-value=7.6e-05  Score=77.02  Aligned_cols=135  Identities=16%  Similarity=0.192  Sum_probs=81.2

Q ss_pred             cCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccc
Q 005711          416 LDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQ  495 (681)
Q Consensus       416 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  495 (681)
                      +..+.+++.|++++|.++ .+|.   -..+|++|.+++|.--..+|+.+.  ++|++|++++|.....+|.      +|+
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe  115 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVR  115 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccc
Confidence            345688999999999877 4562   235699999998654445665443  5899999998833234553      466


Q ss_pred             eeecccCcc--ccCCC-CCcccccCCcccc--ccCCcccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCc
Q 005711          496 MMDFSTNKF--MGFIP-DAVGMDLSDNLLH--GTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNS  567 (681)
Q Consensus       496 ~L~ls~n~~--~~~~p-~~~~L~Ls~N~l~--g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~  567 (681)
                      .|+++.+..  .+.+| ....|.+.+++..  ..+|..  -.++|++|++++|.... .|. +.  .+|+.|+++.|.
T Consensus       116 ~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls~n~  188 (426)
T PRK15386        116 SLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNII-LPEKLP--ESLQSITLHIEQ  188 (426)
T ss_pred             eEEeCCCCCcccccCcchHhheeccccccccccccccc--cCCcccEEEecCCCccc-Cccccc--ccCcEEEecccc
Confidence            777766543  12333 3445655432211  011111  11578888888777552 333 32  578888887763

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.66  E-value=5.6e-05  Score=51.82  Aligned_cols=38  Identities=37%  Similarity=0.586  Sum_probs=29.5

Q ss_pred             CCccEEEccCCcCccccCccccCCCCCCEEEccCccCcc
Q 005711          180 MNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTG  218 (681)
Q Consensus       180 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  218 (681)
                      ++|++|++++|+++ .+|..++++++|++|++++|+++.
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            36888888888888 567778889999999998888874

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.59  E-value=4.2e-05  Score=52.46  Aligned_cols=35  Identities=40%  Similarity=0.580  Sum_probs=17.7

Q ss_pred             ccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCc
Q 005711          534 GLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLT  569 (681)
Q Consensus       534 ~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~  569 (681)
                      +|++|++++|+++ .+|. ++++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555555555555 3333 555555555555555555

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.59  E-value=0.0003  Score=72.77  Aligned_cols=58  Identities=10%  Similarity=0.104  Sum_probs=33.7

Q ss_pred             cccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCC
Q 005711          101 RLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN  164 (681)
Q Consensus       101 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n  164 (681)
                      .+..+.++++|++++|.++. +|.   --.+|++|+++++.--..+|..+  .++|++|++++|
T Consensus        47 r~~~~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         47 QIEEARASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             HHHHhcCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            34556777888888776653 341   12357777777643323455443  246666666665

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.24  E-value=0.00051  Score=62.71  Aligned_cols=104  Identities=28%  Similarity=0.226  Sum_probs=50.4

Q ss_pred             CCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEE
Q 005711          107 FLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLD  186 (681)
Q Consensus       107 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~  186 (681)
                      +...+||++|++...  +.|..++.|.+|.|++|+|+.+-|.--..+++|+.|.|.+|.+..-.--..+..+ ++|++|.
T Consensus        43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~-p~L~~Lt  119 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASC-PKLEYLT  119 (233)
T ss_pred             ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccC-Cccceee
Confidence            344556666555421  2244556666666666666644444333445555555555532211111122233 4555555


Q ss_pred             ccCCcCcccc---CccccCCCCCCEEEccC
Q 005711          187 FSFNSFCGEI---PESLYYLKSLKHLDLEK  213 (681)
Q Consensus       187 L~~n~l~~~~---p~~l~~l~~L~~L~L~~  213 (681)
                      +-+|..+..-   -..+..+++|+.||+.+
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhh
Confidence            5555544211   12345566777777655

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.20  E-value=0.00018  Score=80.77  Aligned_cols=64  Identities=22%  Similarity=0.351  Sum_probs=33.6

Q ss_pred             CCCCEeeCCCCCCCCccCCchhccccCCccEEEccCCcCccc-cCccccCCCCCCEEEccCccCc
Q 005711          154 RNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGE-IPESLYYLKSLKHLDLEKNNLT  217 (681)
Q Consensus       154 ~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~  217 (681)
                      .+|++|++++...+....|..++.+.|+|+.|.+++-.+... .-.-..++++|..||+++.+++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~  186 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS  186 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc
Confidence            356666666655555555555555556666666655444321 1112334555666666655554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.12  E-value=0.0024  Score=55.89  Aligned_cols=122  Identities=20%  Similarity=0.242  Sum_probs=43.4

Q ss_pred             cccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCc
Q 005711          343 KITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSL  422 (681)
Q Consensus       343 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L  422 (681)
                      .|..+++|+.+.+.+ .+.......|.++++|+.+++.++ +...-...|..+.+++.+.+.+ .+.......|..+++|
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            344555566666553 334333444555556666666553 3333333444444555555543 2222222334445555


Q ss_pred             cEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCC
Q 005711          423 KILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNL  470 (681)
Q Consensus       423 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  470 (681)
                      +.+++..+ +.......|.++ +|+.+.+.. .+.......|.++++|
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            55555443 332333444554 555555544 2222333344444443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.11  E-value=0.00032  Score=78.78  Aligned_cols=133  Identities=20%  Similarity=0.223  Sum_probs=81.2

Q ss_pred             cEEEEEcCCCCCcc-cccccc-cCCCCCCEEECCCCcCCcc-ccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEe
Q 005711           83 HVVSINLTDTSLSG-QVHPRL-CKLSFLEFLVLSSNAFTGR-ISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLREL  159 (681)
Q Consensus        83 ~v~~L~L~~~~l~g-~~~~~l-~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  159 (681)
                      .+.+||+++..... .-+..+ ..||.|++|.+++-.+... ......++++|+.||+|+.+++..  ..++++++|+.|
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L  200 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL  200 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence            56677777654321 112233 3478888888887666433 344556788888888888887743  567788888888


Q ss_pred             eCCCCCCCCccCCchhccccCCccEEEccCCcCcccc--Cc----cccCCCCCCEEEccCccCcc
Q 005711          160 ILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEI--PE----SLYYLKSLKHLDLEKNNLTG  218 (681)
Q Consensus       160 ~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~--p~----~l~~l~~L~~L~L~~n~l~~  218 (681)
                      .+.+=.+.....-..+.++ ++|++||+|........  ..    .-..+|+|+.||.+++.+.+
T Consensus       201 ~mrnLe~e~~~~l~~LF~L-~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNL-KKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             hccCCCCCchhhHHHHhcc-cCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            7766533332333456667 77888888776543211  11    11246677777777666554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.03  E-value=0.0011  Score=60.60  Aligned_cols=35  Identities=40%  Similarity=0.502  Sum_probs=16.6

Q ss_pred             cccccceeecCCCcCcccCCC----cCCCCCCCEEECCC
Q 005711          531 QLQGLEYLNLSFNFLDGQVPG----LYRLRSLRALDLSH  565 (681)
Q Consensus       531 ~l~~L~~L~Ls~N~l~~~ip~----~~~l~~L~~L~Ls~  565 (681)
                      .|+.|++|.+-+|..+..---    +..+++|+.||++.
T Consensus       111 ~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  111 SCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             cCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            345555555555555422111    33455555555544

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.82  E-value=0.00011  Score=74.20  Aligned_cols=84  Identities=20%  Similarity=0.100  Sum_probs=43.1

Q ss_pred             CCCEEEccCCCCCCcC--CccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCCc-CccccCcc-ccCCCCC
Q 005711          131 GLKTLDLSYNKFVGVV--PDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNS-FCGEIPES-LYYLKSL  206 (681)
Q Consensus       131 ~L~~L~Ls~n~l~~~~--p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~-l~~~~p~~-l~~l~~L  206 (681)
                      .|+.|.+.+++=.+.-  -..-.+++++++|++.++..++...-..+++.+++|++|++..|. ++...-.. -..+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            5777777776543322  123356777777777777544443333344444566666666532 33221111 1234555


Q ss_pred             CEEEccCc
Q 005711          207 KHLDLEKN  214 (681)
Q Consensus       207 ~~L~L~~n  214 (681)
                      ++|+++.+
T Consensus       219 ~~lNlSwc  226 (483)
T KOG4341|consen  219 KYLNLSWC  226 (483)
T ss_pred             HHhhhccC
Confidence            55555554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.76  E-value=0.0008  Score=64.14  Aligned_cols=37  Identities=41%  Similarity=0.436  Sum_probs=17.5

Q ss_pred             CCCCCCEEEccCC--CCCCcCCccccCCCCCCEeeCCCC
Q 005711          128 GLSGLKTLDLSYN--KFVGVVPDAIMKLRNLRELILKGN  164 (681)
Q Consensus       128 ~l~~L~~L~Ls~n--~l~~~~p~~~~~l~~L~~L~L~~n  164 (681)
                      .|++|++|.+|.|  ++++.++.-...+++|+++++++|
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N  101 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN  101 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence            4445555555555  333333333334455555555555

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.72  E-value=0.0065  Score=53.17  Aligned_cols=107  Identities=18%  Similarity=0.207  Sum_probs=61.8

Q ss_pred             cccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCC
Q 005711          366 ARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKS  445 (681)
Q Consensus       366 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  445 (681)
                      ..|.++++|+.+.+.. .+...-...|..+.+++.+.+.++ +.......|.++++++.+.+.+ .+.......|..+++
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            4577888899999875 455555667778888888888774 5545555677787888888866 444344556777888


Q ss_pred             CcEEECCCCcCCCcchhhhhcCCCCCEEEccC
Q 005711          446 LEIVDFSSNNLSGSLNDAITKWTNLKYFSIAR  477 (681)
Q Consensus       446 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  477 (681)
                      |+.+++..+ +.......+.++ .|+.+.+..
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             ccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            888888765 544445566666 788887765

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.61  E-value=0.00013  Score=73.69  Aligned_cols=108  Identities=21%  Similarity=0.223  Sum_probs=67.0

Q ss_pred             CCCCEEECCCCcCCcc--ccccccCCCCCCEEEccCCC-CCCcCCccc-cCCCCCCEeeCCCCCCCCccCCchhccccCC
Q 005711          106 SFLEFLVLSSNAFTGR--ISTCFGGLSGLKTLDLSYNK-FVGVVPDAI-MKLRNLRELILKGNPELGGVFPGWVGNFSMN  181 (681)
Q Consensus       106 ~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~-~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~  181 (681)
                      ..|+.|.++++.=.+.  +-..-.+++++++|++.++. ++...-..+ ..+++|+++++..+..++...-..++.-.++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            4688999988754333  33445689999999998886 332211122 4688999999998755444433334433489


Q ss_pred             ccEEEccCCc-Cccc-cCccccCCCCCCEEEccC
Q 005711          182 LEKLDFSFNS-FCGE-IPESLYYLKSLKHLDLEK  213 (681)
Q Consensus       182 L~~L~L~~n~-l~~~-~p~~l~~l~~L~~L~L~~  213 (681)
                      |++|+++.+. +++. +-.-..+++.++.+.+.+
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kG  251 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKG  251 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcc
Confidence            9999999886 3331 111233455566655554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.66  E-value=0.0073  Score=57.75  Aligned_cols=60  Identities=28%  Similarity=0.360  Sum_probs=27.5

Q ss_pred             CCccEEEccCC--CCcCCCcccccCCCCCCEEeccCCccccccccc---cCCCCCCCEEEccCCcCc
Q 005711          324 AGLVLLDLSHN--RFSGEIPLKITELKSLQALFLSNNLLIGEIPAR---IGNLTYLQVIDLSHNMLS  385 (681)
Q Consensus       324 ~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~---l~~l~~L~~L~Ls~n~l~  385 (681)
                      ++|+.|.++.|  ++.+.++.....+++|+++++++|++..  +..   +..+.+|..||+.+|..+
T Consensus        65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen   65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             chhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCcc
Confidence            35555555555  3333333333344555555555555531  111   233444555555555433

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.23  E-value=0.00086  Score=64.17  Aligned_cols=78  Identities=27%  Similarity=0.258  Sum_probs=39.1

Q ss_pred             cEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcC-CccccCCCCCCEeeC
Q 005711           83 HVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVV-PDAIMKLRNLRELIL  161 (681)
Q Consensus        83 ~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L  161 (681)
                      .|.+|+.-++++...  ....+++.|+.|.||-|.|+..-|  |..|++|+.|+|..|.|...- -..+.++++|+.|.|
T Consensus        20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            455666666655432  112445566666666666654322  455666666666666554210 012344455555555


Q ss_pred             CCC
Q 005711          162 KGN  164 (681)
Q Consensus       162 ~~n  164 (681)
                      ..|
T Consensus        96 ~EN   98 (388)
T KOG2123|consen   96 DEN   98 (388)
T ss_pred             ccC
Confidence            544

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.21  E-value=0.0061  Score=34.65  Aligned_cols=19  Identities=37%  Similarity=0.557  Sum_probs=9.2

Q ss_pred             CCEEEccCCCCCCcCCcccc
Q 005711          132 LKTLDLSYNKFVGVVPDAIM  151 (681)
Q Consensus       132 L~~L~Ls~n~l~~~~p~~~~  151 (681)
                      |++|||++|+++ .+|..|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            455555555555 4444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.18  E-value=0.0071  Score=34.40  Aligned_cols=19  Identities=58%  Similarity=0.758  Sum_probs=9.9

Q ss_pred             CCEEECCCCcCcccCCcccc
Q 005711          558 LRALDLSHNSLTGQIPGNIS  577 (681)
Q Consensus       558 L~~L~Ls~N~l~~~~p~~l~  577 (681)
                      |+.||+++|+++ .+|..|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            455555555555 4554443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.89  E-value=0.0039  Score=59.82  Aligned_cols=61  Identities=28%  Similarity=0.317  Sum_probs=26.7

Q ss_pred             CccEEEccCCCCcCCCcccccCCCCCCEEeccCCcccccc-ccccCCCCCCCEEEccCCcCccc
Q 005711          325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEI-PARIGNLTYLQVIDLSHNMLSGS  387 (681)
Q Consensus       325 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~  387 (681)
                      .|++|.|+-|+|+..-|  +..|++|++|+|..|.|...- -..+.++++|+.|.|..|.-.|.
T Consensus        42 ~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~  103 (388)
T KOG2123|consen   42 LLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGE  103 (388)
T ss_pred             cceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccc
Confidence            44444444444442222  344445555555555443210 12234455555555555544443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=93.68  E-value=0.0071  Score=66.39  Aligned_cols=60  Identities=27%  Similarity=0.107  Sum_probs=31.5

Q ss_pred             CccEEEccCCC-CcCCCcccccC-CCCCCEEeccCCc-ccccc-ccccCCCCCCCEEEccCCcC
Q 005711          325 GLVLLDLSHNR-FSGEIPLKITE-LKSLQALFLSNNL-LIGEI-PARIGNLTYLQVIDLSHNML  384 (681)
Q Consensus       325 ~L~~L~Ls~n~-l~~~~p~~l~~-l~~L~~L~L~~n~-l~~~~-~~~l~~l~~L~~L~Ls~n~l  384 (681)
                      +|+.++++.+. +++..-..+.. +++|+.|.+.++. ++... -.....++.|++|+++.+..
T Consensus       244 ~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  244 KLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             CcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            56666666665 44332222222 5677777766555 33221 12224466677777776653

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.15  E-value=0.0025  Score=59.50  Aligned_cols=83  Identities=16%  Similarity=0.055  Sum_probs=68.2

Q ss_pred             CCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEe
Q 005711           80 QTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLREL  159 (681)
Q Consensus        80 ~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  159 (681)
                      ...+|+.||++.+.+.. +-..+..++.+..||++.|.+. -.|..++.+..++++++..|+.+ ..|.+++..++++++
T Consensus        40 ~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN  116 (326)
T ss_pred             ccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence            34689999999887752 2345667788899999988876 46888889999999999999888 779999999999999


Q ss_pred             eCCCCC
Q 005711          160 ILKGNP  165 (681)
Q Consensus       160 ~L~~n~  165 (681)
                      ++.+|+
T Consensus       117 e~k~~~  122 (326)
T KOG0473|consen  117 EQKKTE  122 (326)
T ss_pred             hhccCc
Confidence            998884

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=92.73  E-value=0.013  Score=64.33  Aligned_cols=113  Identities=25%  Similarity=0.192  Sum_probs=61.0

Q ss_pred             CCCCCCEEECCCCc-CCcc-ccccccCCCCCCEEEccCC-CCCCcCC----ccccCCCCCCEeeCCCCCCCCccCCchhc
Q 005711          104 KLSFLEFLVLSSNA-FTGR-ISTCFGGLSGLKTLDLSYN-KFVGVVP----DAIMKLRNLRELILKGNPELGGVFPGWVG  176 (681)
Q Consensus       104 ~l~~L~~L~Ls~n~-l~~~-~~~~~~~l~~L~~L~Ls~n-~l~~~~p----~~~~~l~~L~~L~L~~n~~~~~~~p~~l~  176 (681)
                      .++.|+.|.+..+. +... +-.....++.|+.|+++++ ......+    .....+.+|+.|+++++...+...-..+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            35677777777653 3221 2334556777777777762 2111111    22345577777777776433333333333


Q ss_pred             cccCCccEEEccCCc-Cccc-cCccccCCCCCCEEEccCccC
Q 005711          177 NFSMNLEKLDFSFNS-FCGE-IPESLYYLKSLKHLDLEKNNL  216 (681)
Q Consensus       177 ~l~~~L~~L~L~~n~-l~~~-~p~~l~~l~~L~~L~L~~n~l  216 (681)
                      ..+++|++|.+.++. ++.. +-.....++.|++|+++++..
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            323677777766666 4432 112233567788888876654

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.51  E-value=0.0016  Score=70.06  Aligned_cols=87  Identities=28%  Similarity=0.235  Sum_probs=44.6

Q ss_pred             cccEEecCCCccccccC----ccccCCCCCcEEeccCCCccCCCChhhhhc-ccC-CCccEEEccCCCCcCC----Cccc
Q 005711          274 ALTHLNLSHNHLNYEIS----PRLVFFEKLLLLDLSFNDLSGPLPSKIAQT-TEK-AGLVLLDLSHNRFSGE----IPLK  343 (681)
Q Consensus       274 ~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~-~~~-~~L~~L~Ls~n~l~~~----~p~~  343 (681)
                      .+..+.|.+|.+.....    ..+...+.|..|++++|.+.+.--..+... ... ..++.|++..|.+++.    +...
T Consensus        88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~  167 (478)
T KOG4308|consen   88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV  167 (478)
T ss_pred             hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence            36677777777664322    234456677777777777763221112111 110 1345555655655532    2333


Q ss_pred             ccCCCCCCEEeccCCcc
Q 005711          344 ITELKSLQALFLSNNLL  360 (681)
Q Consensus       344 l~~l~~L~~L~L~~n~l  360 (681)
                      +.....++.++++.|.+
T Consensus       168 L~~~~~l~~l~l~~n~l  184 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGL  184 (478)
T ss_pred             HhcccchhHHHHHhccc
Confidence            44455566666666654

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=90.48  E-value=0.18  Score=26.52  Aligned_cols=13  Identities=54%  Similarity=0.810  Sum_probs=5.0

Q ss_pred             CCCEEEccCCCCC
Q 005711          131 GLKTLDLSYNKFV  143 (681)
Q Consensus       131 ~L~~L~Ls~n~l~  143 (681)
                      +|++|+|++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4455555555443

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=90.03  E-value=0.0022  Score=69.01  Aligned_cols=87  Identities=29%  Similarity=0.220  Sum_probs=51.4

Q ss_pred             CCEEEccCCccccCCChh----hcccCcccEEecCCCccccccCcc----ccCC-CCCcEEeccCCCccCCCChhhh-hc
Q 005711          251 LTVLKLDNNSVVGGIPTC----IASLQALTHLNLSHNHLNYEISPR----LVFF-EKLLLLDLSFNDLSGPLPSKIA-QT  320 (681)
Q Consensus       251 L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~L~~n~l~~~~~~~----l~~l-~~L~~L~L~~n~l~~~~p~~~~-~~  320 (681)
                      +..+.+.+|.+.......    +.....|+.|++++|.+.+..-..    +... ..+++|++..|.+++.--..+. .+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            667778888776543333    345677888888888876432211    2222 4566777777777644322221 12


Q ss_pred             ccCCCccEEEccCCCCc
Q 005711          321 TEKAGLVLLDLSHNRFS  337 (681)
Q Consensus       321 ~~~~~L~~L~Ls~n~l~  337 (681)
                      .....++.++++.|.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~  185 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLI  185 (478)
T ss_pred             hcccchhHHHHHhcccc
Confidence            22347788888888764

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.01  E-value=0.034  Score=51.13  Aligned_cols=83  Identities=20%  Similarity=0.218  Sum_probs=47.7

Q ss_pred             CCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCCc-CccccCccccCCCCCCEE
Q 005711          131 GLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNS-FCGEIPESLYYLKSLKHL  209 (681)
Q Consensus       131 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L  209 (681)
                      .++.+|-++..|..+.-..+.+++.++.|.+.++..+...--..++...++|+.|++++|. ++..--..+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            3556666666665554455566666666666666443332222333444677777777775 443333446667777777


Q ss_pred             EccC
Q 005711          210 DLEK  213 (681)
Q Consensus       210 ~L~~  213 (681)
                      .+.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            6654

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=87.60  E-value=0.027  Score=52.77  Aligned_cols=64  Identities=20%  Similarity=0.128  Sum_probs=36.5

Q ss_pred             cccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccCcc
Q 005711          527 KGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSF  592 (681)
Q Consensus       527 ~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l  592 (681)
                      ..+..++.+..|+++.|.+. ..|. ++....+..+++..|..+ ..|.++...+.+++++.-.|+|
T Consensus        59 ~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen   59 KNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEF  123 (326)
T ss_pred             cchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcc
Confidence            34444555666666666655 3333 555555556666666555 4555566666666666666655

>smart00370 LRR Leucine-rich repeats, outliers

Probab=84.90  E-value=0.79  Score=27.02  Aligned_cols=14  Identities=43%  Similarity=0.648  Sum_probs=8.7

Q ss_pred             CCCCEEEccCCCCC
Q 005711          130 SGLKTLDLSYNKFV  143 (681)
Q Consensus       130 ~~L~~L~Ls~n~l~  143 (681)
                      ++|++|+|++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            45666666666665

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=84.90  E-value=0.79  Score=27.02  Aligned_cols=14  Identities=43%  Similarity=0.648  Sum_probs=8.7

Q ss_pred             CCCCEEEccCCCCC
Q 005711          130 SGLKTLDLSYNKFV  143 (681)
Q Consensus       130 ~~L~~L~Ls~n~l~  143 (681)
                      ++|++|+|++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            45666666666665

>smart00370 LRR Leucine-rich repeats, outliers

Probab=84.89  E-value=0.73  Score=27.19  Aligned_cols=14  Identities=57%  Similarity=0.816  Sum_probs=8.3

Q ss_pred             CCCCEEECCCCcCc
Q 005711          556 RSLRALDLSHNSLT  569 (681)
Q Consensus       556 ~~L~~L~Ls~N~l~  569 (681)
                      ++|+.|+|++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            45566666666665

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=84.89  E-value=0.73  Score=27.19  Aligned_cols=14  Identities=57%  Similarity=0.816  Sum_probs=8.3

Q ss_pred             CCCCEEECCCCcCc
Q 005711          556 RSLRALDLSHNSLT  569 (681)
Q Consensus       556 ~~L~~L~Ls~N~l~  569 (681)
                      ++|+.|+|++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            45566666666665

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.02  E-value=0.25  Score=45.63  Aligned_cols=81  Identities=23%  Similarity=0.270  Sum_probs=46.4

Q ss_pred             cEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCcc-ccccc-cCCCCCCEEEccCC-CCCCcCCccccCCCCCCEe
Q 005711           83 HVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGR-ISTCF-GGLSGLKTLDLSYN-KFVGVVPDAIMKLRNLREL  159 (681)
Q Consensus        83 ~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~-~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L  159 (681)
                      .|..+|-++..+...--..+.+++.++.|.+.++.--+. --+.+ +-.++|+.|+|++| +|+...-..+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            477777777777665555667777777777776643222 00011 13456677777755 3554434445566666666


Q ss_pred             eCCC
Q 005711          160 ILKG  163 (681)
Q Consensus       160 ~L~~  163 (681)
                      .+.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            5544

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=80.86  E-value=0.62  Score=26.90  Aligned_cols=13  Identities=38%  Similarity=0.726  Sum_probs=4.9

Q ss_pred             CCcEEECCCCcCC
Q 005711          445 SLEIVDFSSNNLS  457 (681)
Q Consensus       445 ~L~~L~L~~n~l~  457 (681)
                      +|++|++++|+++
T Consensus         3 ~L~~L~l~~n~i~   15 (24)
T PF13516_consen    3 NLETLDLSNNQIT   15 (24)
T ss_dssp             T-SEEE-TSSBEH
T ss_pred             CCCEEEccCCcCC
Confidence            4444444444443

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	681
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		6e-43
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-18
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		8e-43
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-18
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-19
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-19
3rg1_A	612	Crystal Structure Of The Rp105MD-1 Complex Length =		3e-05
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		5e-05
3b2d_A	603	Crystal Structure Of Human Rp105MD-1 Complex Length		2e-04
4b8c_D	727	Nuclease Module Of The Yeast Ccr4-Not Complex Lengt		3e-04
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		3e-04
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		6e-04
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		7e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  172 bits (436), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 191/598 (31%), Positives = 268/598 (44%), Gaps = 62/598 (10%)
Query: 63  SWVGSNCTNWT-GVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGR 121
           S  G+N   W     C    G +  + ++   +SG V    C    LEFL +SSN F+  
Sbjct: 159 SISGANVVGWVLSDGC----GELKHLAISGNKISGDVDVSRCV--NLEFLDVSSNNFSTG 212
Query: 122 ISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMN 181
           I    G  S L+ LD+S NK  G    AI     L+ L +  N  +G + P  +     +
Sbjct: 213 I-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPL----KS 267
Query: 182 LEKLDFSFNSFCGEIPESLY-YLKSLKHLDLEKNNLTGNVHDFY---QSLLVLNLGSNRF 237
           L+ L  + N F GEIP+ L     +L  LDL  N+  G V  F+     L  L L SN F
Sbjct: 268 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 327
Query: 238 SGTLPCFAASAM-SLTVLKLDNNSVVGGIPTCIASLQA-LTXXXXXXXXXXYEISPRLVF 295
           SG LP      M  L VL L  N   G +P  + +L A L             I P L  
Sbjct: 328 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 387
Query: 296 FEKXXXXXXXXXXX--XGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQAL 353
             K              G +P  ++  +E   LV L LS N  SG IP  +  L  L+ L
Sbjct: 388 NPKNTLQELYLQNNGFTGKIPPTLSNCSE---LVSLHLSFNYLSGTIPSSLGSLSKLRDL 444
Query: 354 FLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQ 413
            L  N+L GEIP  +  +  L+ + L  N L+G IP  +  C  L  + ++NN L+GEI 
Sbjct: 445 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 504
Query: 414 PELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNL--- 470
             +  L++L IL +SNN  SG IP  L   +SL  +D ++N  +G++  A+ K +     
Sbjct: 505 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA 564
Query: 471 ------KYFSIARNKL------SGNLPNWLFSFQAI---QMMDFSTNKFMGFIPDAVG-- 513
                 +Y  I  + +      +GNL      FQ I   Q+   ST           G  
Sbjct: 565 NFIAGKRYVYIKNDGMKKECHGAGNL----LEFQGIRSEQLNRLSTRNPCNITSRVYGGH 620
Query: 514 -------------MDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLR 559
                        +D+S N+L G IPK +  +  L  LNL  N + G +P  +  LR L 
Sbjct: 621 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN 680
Query: 560 ALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGA-FAGNPNLC 616
            LDLS N L G+IP  +S+L  LT ++LS N+ SG +P    ++ FP A F  NP LC
Sbjct: 681 ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLC 738

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/306 (29%), Positives = 144/306 (47%), Gaps = 69/306 (22%)
Query: 353 LFLSNNLLIGEI-----------------------------------------------P 365
           LFLSN+ + G +                                               P
Sbjct: 79  LFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 138
Query: 366 ARIG---NLTYLQVIDLSHNMLSGSIPLNIV---GCFQLLALIVNNNNLSGEIQPELDAL 419
            ++     L  L+V+DLS N +SG+  +  V   GC +L  L ++ N +SG++  ++   
Sbjct: 139 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRC 196
Query: 420 DSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNK 479
            +L+ LD+S+N  S  IP  L    +L+ +D S N LSG  + AI+  T LK  +I+ N+
Sbjct: 197 VNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 255
Query: 480 LSGNLPNWLFSFQAIQMMDFSTNKFMGFIPD--------AVGMDLSDNLLHGTIPKGLFQ 531
             G +P      +++Q +  + NKF G IPD          G+DLS N  +G +P     
Sbjct: 256 FVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 313
Query: 532 LQGLEYLNLSFNFLDGQVP--GLYRLRSLRALDLSHNSLTGQIPGNISSLQ-ELTLLNLS 588
              LE L LS N   G++P   L ++R L+ LDLS N  +G++P ++++L   L  L+LS
Sbjct: 314 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 373
Query: 589 YNSFSG 594
            N+FSG
Sbjct: 374 SNNFSG 379

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  171 bits (434), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 191/598 (31%), Positives = 268/598 (44%), Gaps = 62/598 (10%)
Query: 63  SWVGSNCTNWT-GVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGR 121
           S  G+N   W     C    G +  + ++   +SG V    C    LEFL +SSN F+  
Sbjct: 162 SISGANVVGWVLSDGC----GELKHLAISGNKISGDVDVSRCV--NLEFLDVSSNNFSTG 215
Query: 122 ISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMN 181
           I    G  S L+ LD+S NK  G    AI     L+ L +  N  +G + P  +     +
Sbjct: 216 I-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPL----KS 270
Query: 182 LEKLDFSFNSFCGEIPESLY-YLKSLKHLDLEKNNLTGNVHDFY---QSLLVLNLGSNRF 237
           L+ L  + N F GEIP+ L     +L  LDL  N+  G V  F+     L  L L SN F
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330
Query: 238 SGTLPCFAASAM-SLTVLKLDNNSVVGGIPTCIASLQA-LTXXXXXXXXXXYEISPRLVF 295
           SG LP      M  L VL L  N   G +P  + +L A L             I P L  
Sbjct: 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390
Query: 296 FEKXXXXXXXXXXX--XGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQAL 353
             K              G +P  ++  +E   LV L LS N  SG IP  +  L  L+ L
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSE---LVSLHLSFNYLSGTIPSSLGSLSKLRDL 447
Query: 354 FLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQ 413
            L  N+L GEIP  +  +  L+ + L  N L+G IP  +  C  L  + ++NN L+GEI 
Sbjct: 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507
Query: 414 PELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNL--- 470
             +  L++L IL +SNN  SG IP  L   +SL  +D ++N  +G++  A+ K +     
Sbjct: 508 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA 567
Query: 471 ------KYFSIARNKL------SGNLPNWLFSFQAI---QMMDFSTNKFMGFIPDAVG-- 513
                 +Y  I  + +      +GNL      FQ I   Q+   ST           G  
Sbjct: 568 NFIAGKRYVYIKNDGMKKECHGAGNL----LEFQGIRSEQLNRLSTRNPCNITSRVYGGH 623
Query: 514 -------------MDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLR 559
                        +D+S N+L G IPK +  +  L  LNL  N + G +P  +  LR L 
Sbjct: 624 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN 683
Query: 560 ALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGA-FAGNPNLC 616
            LDLS N L G+IP  +S+L  LT ++LS N+ SG +P    ++ FP A F  NP LC
Sbjct: 684 ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLC 741

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/306 (29%), Positives = 144/306 (47%), Gaps = 69/306 (22%)
Query: 353 LFLSNNLLIGEI-----------------------------------------------P 365
           LFLSN+ + G +                                               P
Sbjct: 82  LFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141
Query: 366 ARIG---NLTYLQVIDLSHNMLSGSIPLNIV---GCFQLLALIVNNNNLSGEIQPELDAL 419
            ++     L  L+V+DLS N +SG+  +  V   GC +L  L ++ N +SG++  ++   
Sbjct: 142 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRC 199
Query: 420 DSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNK 479
            +L+ LD+S+N  S  IP  L    +L+ +D S N LSG  + AI+  T LK  +I+ N+
Sbjct: 200 VNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 258
Query: 480 LSGNLPNWLFSFQAIQMMDFSTNKFMGFIPD--------AVGMDLSDNLLHGTIPKGLFQ 531
             G +P      +++Q +  + NKF G IPD          G+DLS N  +G +P     
Sbjct: 259 FVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316
Query: 532 LQGLEYLNLSFNFLDGQVP--GLYRLRSLRALDLSHNSLTGQIPGNISSLQ-ELTLLNLS 588
              LE L LS N   G++P   L ++R L+ LDLS N  +G++P ++++L   L  L+LS
Sbjct: 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 376
Query: 589 YNSFSG 594
            N+FSG
Sbjct: 377 SNNFSG 382

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 119/240 (49%), Gaps = 22/240 (9%)
Query: 312 PLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNL 371
           P+PS +A       L +  +  N   G IP  I +L  L  L++++  + G IP  +  +
Sbjct: 67  PIPSSLANLPYLNFLYIGGI--NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124
Query: 372 TYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSL-KILDISNN 430
             L  +D S+N LSG++P +I     L+ +  + N +SG I     +   L   + IS N
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184
Query: 431 QISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFS 490
           +++G+IP T A L +L  VD S N L G  +       N +   +A+N L+         
Sbjct: 185 RLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA--------- 234
Query: 491 FQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVP 550
                   F   K +G   +  G+DL +N ++GT+P+GL QL+ L  LN+SFN L G++P
Sbjct: 235 --------FDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 112/219 (51%), Gaps = 8/219 (3%)
Query: 406 NNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAIT 465
           NNL G I P +  L  L  L I++  +SG IP  L+ +K+L  +DFS N LSG+L  +I+
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 466 KWTNLKYFSIARNKLSGNLPNWLFSFQAI-QMMDFSTNKFMGFIPDAVG------MDLSD 518
              NL   +   N++SG +P+   SF  +   M  S N+  G IP          +DLS 
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSR 206
Query: 519 NLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISS 578
           N+L G         +  + ++L+ N L   +  +   ++L  LDL +N + G +P  ++ 
Sbjct: 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266
Query: 579 LQELTLLNLSYNSFSGFVPWKQGYQKFP-GAFAGNPNLC 616
           L+ L  LN+S+N+  G +P     Q+F   A+A N  LC
Sbjct: 267 LKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305

>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 91/198 (45%), Gaps = 19/198 (9%)
Query: 416 LDALDSLKILDISNNQISGE--IPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYF 473
           L+ L++L+ LD+S++ I       L L  L+ L+ ++ S N   G  + A  +   L+  
Sbjct: 345 LEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELL 404
Query: 474 SIARNKLSGNLPNWLFSFQAIQMM----------DFSTNKFMGFIPDAVGMDLSDNLLH- 522
            +A   L    P+    FQ + ++          D S    +  + D   ++L  N    
Sbjct: 405 DVAFTHLHVKAPHS--PFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQD 462
Query: 523 GTIPK-GLFQLQG-LEYLNLS-FNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSL 579
           G+I K  L Q+ G LE L LS  N L       + LR++  LDLSHNSLTG     +S L
Sbjct: 463 GSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHL 522
Query: 580 QELTLLNLSYNSFSGFVP 597
           + L  LN++ N+     P
Sbjct: 523 KGL-YLNMASNNIRIIPP 539

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 94/196 (47%), Gaps = 19/196 (9%)
Query: 419 LDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLS--GSLNDAITKWTNLKYFSIA 476
           L SLK L  ++N+  G    +   L SLE +D S N LS  G  + +    T+LKY  ++
Sbjct: 324 LKSLKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381
Query: 477 RNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPK--------G 528
            N +     N+L   + ++ +DF  +        +V + L  NL++  I          G
Sbjct: 382 FNGVITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLR-NLIYLDISHTHTRVAFNG 439
Query: 529 LFQ-LQGLEYLNLSFN-FLDGQVPGLY-RLRSLRALDLSHNSLTGQIPGNISSLQELTLL 585
           +F  L  LE L ++ N F +  +P ++  LR+L  LDLS   L    P   +SL  L +L
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499
Query: 586 NLSYNSFSGF--VPWK 599
           N+S+N+F      P+K
Sbjct: 500 NMSHNNFFSLDTFPYK 515

>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 119/284 (41%), Gaps = 17/284 (5%)
Query: 329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSI 388
           L+L  +RFS            LQ L L+   L G +P+ +  L  L+ + LS N      
Sbjct: 256 LNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLC 314
Query: 389 PLNIVGCFQLLALIVNNNNLSGEIQPE-LDALDSLKILDISNNQISGE--IPLTLAGLKS 445
            ++      L  L +  N     +    L+ L +L+ LD+S+N I       L L  L  
Sbjct: 315 QISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSH 374
Query: 446 LEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFS----FQAIQM----M 497
           L+ ++ S N   G  + A  +   L+   +A  +L  N P   F      Q + +    +
Sbjct: 375 LQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFL 434
Query: 498 DFSTNKFMGFIPDAVGMDLSDNLLH-GTIPK-GLFQLQG-LEYLNLS-FNFLDGQVPGLY 553
           D S    +  +P    ++L  N    GTI K  L Q  G LE L LS    L       +
Sbjct: 435 DTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFH 494
Query: 554 RLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVP 597
            L  +  +DLSHNSLT     ++S L+ +  LNL+ NS +   P
Sbjct: 495 SLGKMSHVDLSHNSLTCDSIDSLSHLKGI-YLNLAANSINIISP 537

>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 34/49 (69%), Gaps = 2/49 (4%)
Query: 350 LQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQL 398
           L  L+L+ N L  E+PA I NL+ L+V+DLSHN L+ S+P  +  CFQL
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQL 295

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 90/187 (48%), Gaps = 17/187 (9%)
Query: 419 LDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLS--GSLNDAITKWTNLKYFSIA 476
           L SLK L  ++N+  G    +   L SLE +D S N LS  G  + +     +LKY  ++
Sbjct: 348 LKSLKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLS 405
Query: 477 RNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPK--------G 528
            N +     N+L   + ++ +DF  +        +V + L  NL++  I          G
Sbjct: 406 FNGVITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLR-NLIYLDISHTHTRVAFNG 463
Query: 529 LFQ-LQGLEYLNLSFN-FLDGQVPGLY-RLRSLRALDLSHNSLTGQIPGNISSLQELTLL 585
           +F  L  LE L ++ N F +  +P ++  LR+L  LDLS   L    P   +SL  L +L
Sbjct: 464 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 523
Query: 586 NLSYNSF 592
           N+S+N+F
Sbjct: 524 NMSHNNF 530

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 104/239 (43%), Gaps = 27/239 (11%)
Query: 370 NLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPE--LDALDSLKILDI 427
           NL  L+++DL  + +    P    G F L  L +    LS  +  +     L +L  LD+
Sbjct: 71  NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDL 130
Query: 428 SNNQI-SGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAIT--KWTNLKYFSIARNKLSGNL 484
           S NQI S  +  +   L SL+ +DFSSN +       +   +   L +FS+A N L   +
Sbjct: 131 SKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV 190
Query: 485 P-NW-----LFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQL-QGLEY 537
             +W      F    ++++D S N +         +D++ N  +       F L      
Sbjct: 191 SVDWGKCMNPFRNMVLEILDVSGNGWT--------VDITGNFSNAISKSQAFSLILAHHI 242
Query: 538 LNLSFNFLDGQVP------GLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYN 590
           +   F F + + P      GL R  S+R LDLSH  +         +L++L +LNL+YN
Sbjct: 243 MGAGFGFHNIKDPDQNTFAGLAR-SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN 300

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 74/172 (43%), Gaps = 11/172 (6%)
Query: 423 KILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSG 482
           ++L++  NQI      +   L+ LEI+  S N++      A     NL    +  N+L+ 
Sbjct: 67  RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT- 125
Query: 483 NLPNWLFSF-QAIQMMDFSTNKFMGF-------IPDAVGMDLSDNLLHGTIPKGLFQ-LQ 533
            +PN  F +   ++ +    N            IP    +DL +      I +G F+ L 
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185
Query: 534 GLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLL 585
            L YLNL+   L  ++P L  L  L  LDLS N L+   PG+   L  L  L
Sbjct: 186 NLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKL 236

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	681
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-124
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-121
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-112
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-79
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-22
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-81
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-73
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-58
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-77
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-76
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-73
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-66
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-56
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-55
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-29
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-72
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-64
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-57
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-41
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-69
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-61
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-56
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-51
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-69
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-57
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-54
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-21
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-68
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-67
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-64
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-53
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-50
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-61
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-61
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-47
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-42
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-31
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-45
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-34
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-23
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-23
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-45
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-45
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-37
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-36
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-41
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-40
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-33
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-31
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-40
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-37
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-39
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-38
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-37
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-37
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-37
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-36
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-35
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-35
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-28
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-35
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-32
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-31
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-34
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-33
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-30
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-32
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-30
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-27
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-31
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-27
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-31
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-27
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-30
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-30
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-26
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-26
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-26
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-23
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-22
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-19
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-24
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-24
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-24
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-24
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-22
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-24
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-20
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-19
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-14
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-14
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-14
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-10
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-11
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	8e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	6e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	5e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	9e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  386 bits (994), Expect = e-124
 Identities = 159/530 (30%), Positives = 253/530 (47%), Gaps = 23/530 (4%)

Query: 83  HVVSINLTDTSLSGQVHPRLC---KLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSY 139
            +  ++L+  S+SG              L+ L +S N  +G +         L+ LD+S 
Sbjct: 152 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSS 209

Query: 140 NKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPES 199
           N F   +P  +     L+ L + GN +L G F   +   +  L+ L+ S N F G IP  
Sbjct: 210 NNFSTGIP-FLGDCSALQHLDISGN-KLSGDFSRAISTCT-ELKLLNISSNQFVGPIPPL 266

Query: 200 LYYLKSLKHLDLEKNNLTGNVHDFY----QSLLVLNLGSNRFSGTLPCFAASAMSLTVLK 255
              LKSL++L L +N  TG + DF      +L  L+L  N F G +P F  S   L  L 
Sbjct: 267 P--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA 324

Query: 256 LDNNSVVGGIPT-CIASLQALTHLNLSHNHLNYEISPRLV-FFEKLLLLDLSFNDLSGPL 313
           L +N+  G +P   +  ++ L  L+LS N  + E+   L      LL LDLS N+ SGP+
Sbjct: 325 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 384

Query: 314 PSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTY 373
              + Q   K  L  L L +N F+G+IP  ++    L +L LS N L G IP+ +G+L+ 
Sbjct: 385 LPNLCQNP-KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK 443

Query: 374 LQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQIS 433
           L+ + L  NML G IP  ++    L  LI++ N+L+GEI   L    +L  + +SNN+++
Sbjct: 444 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503

Query: 434 GEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQA 493
           GEIP  +  L++L I+  S+N+ SG++   +    +L +  +  N  +G +P  +F    
Sbjct: 504 GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG 563

Query: 494 IQMMDFSTNKFMGFIPDAVGM-----DLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQ 548
               +F   K   +I +           +     G   + L +L      N++     G 
Sbjct: 564 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 623

Query: 549 VP-GLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVP 597
                    S+  LD+S+N L+G IP  I S+  L +LNL +N  SG +P
Sbjct: 624 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  378 bits (974), Expect = e-121
 Identities = 162/579 (27%), Positives = 258/579 (44%), Gaps = 58/579 (10%)

Query: 42  EDKASLLLFKSLVQDPTQKLSSW-VGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHP 100
            +   L+ FK ++ D    L  W    N   + GV C      V SI+L+   L+     
Sbjct: 12  REIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNV---- 64

Query: 101 RLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELI 160
                                +S+    L+GL++L LS +   G V        +L  L 
Sbjct: 65  -----------------GFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLD 106

Query: 161 LKGNPELGGVFP--GWVGNFSMNLEKLDFSFNSFCGEIPESLYY-LKSLKHLDLEKNNLT 217
           L  N  L G       +G+ S  L+ L+ S N+       S    L SL+ LDL  N+++
Sbjct: 107 LSRN-SLSGPVTTLTSLGSCS-GLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164

Query: 218 GNVHDFYQ------SLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIAS 271
           G     +        L  L +  N+ SG +        +L  L + +N+   GIP  +  
Sbjct: 165 GANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV--NLEFLDVSSNNFSTGIPF-LGD 221

Query: 272 LQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDL 331
             AL HL++S N L+ + S  +    +L LL++S N   GP+P    +      L  L L
Sbjct: 222 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLK-----SLQYLSL 276

Query: 332 SHNRFSGEIPLKIT-ELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPL 390
           + N+F+GEIP  ++    +L  L LS N   G +P   G+ + L+ + LS N  SG +P+
Sbjct: 277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336

Query: 391 NIVG-CFQLLALIVNNNNLSGEIQPELDAL-DSLKILDISNNQISGEIPLTLAG--LKSL 446
           + +     L  L ++ N  SGE+   L  L  SL  LD+S+N  SG I   L      +L
Sbjct: 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396

Query: 447 EIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMG 506
           + +   +N  +G +   ++  + L    ++ N LSG +P+ L S   ++ +    N   G
Sbjct: 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456

Query: 507 FIPDAVG-------MDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVP-GLYRLRSL 558
            IP  +        + L  N L G IP GL     L +++LS N L G++P  + RL +L
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516

Query: 559 RALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVP 597
             L LS+NS +G IP  +   + L  L+L+ N F+G +P
Sbjct: 517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  355 bits (914), Expect = e-112
 Identities = 169/544 (31%), Positives = 242/544 (44%), Gaps = 64/544 (11%)

Query: 85  VSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGG-LSGLKTLDLSYNKFV 143
             +N++     G + P    L  L++L L+ N FTG I     G    L  LDLS N F 
Sbjct: 250 KLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307

Query: 144 GVVPDAIMKLRNLRELILKGNPELGGVFP-GWVGNFSMNLEKLDFSFNSFCGEIPESLYY 202
           G VP        L  L L  N    G  P   +      L+ LD SFN F GE+PESL  
Sbjct: 308 GAVPPFFGSCSLLESLALSSN-NFSGELPMDTLLKMR-GLKVLDLSFNEFSGELPESLTN 365

Query: 203 LK-SLKHLDLEKNNLTGNV-----HDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKL 256
           L  SL  LDL  NN +G +      +   +L  L L +N F+G +P   ++   L  L L
Sbjct: 366 LSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL 425

Query: 257 DNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSK 316
             N + G IP+ + SL  L  L L  N L  EI   L++ + L  L L FNDL+G +PS 
Sbjct: 426 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 485

Query: 317 IAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQV 376
           ++  T    L  + LS+NR +GEIP  I  L++L  L LSNN   G IPA +G+   L  
Sbjct: 486 LSNCT---NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 542

Query: 377 IDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNN--QISG 434
           +DL+ N+ +G+IP  +      +A     N ++G+    +      K    + N  +  G
Sbjct: 543 LDLNTNLFNGTIPAAMFKQSGKIA----ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG 598

Query: 435 EIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAI 494
                L  L +    + +S    G  +       ++                        
Sbjct: 599 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM------------------------ 634

Query: 495 QMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LY 553
                            + +D+S N+L G IPK +  +  L  LNL  N + G +P  + 
Sbjct: 635 -----------------MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG 677

Query: 554 RLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPG-AFAGN 612
            LR L  LDLS N L G+IP  +S+L  LT ++LS N+ SG +P    ++ FP   F  N
Sbjct: 678 DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNN 737

Query: 613 PNLC 616
           P LC
Sbjct: 738 PGLC 741

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  268 bits (687), Expect = 1e-79
 Identities = 105/362 (29%), Positives = 165/362 (45%), Gaps = 12/362 (3%)

Query: 81  TGHVVSINLTDTSLSGQVHPRLCK--LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLS 138
           +  +++++L+  + SG + P LC+   + L+ L L +N FTG+I       S L +L LS
Sbjct: 367 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 426

Query: 139 YNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPE 198
           +N   G +P ++  L  LR+L L  N  L G  P  +      LE L   FN   GEIP 
Sbjct: 427 FNYLSGTIPSSLGSLSKLRDLKLWLN-MLEGEIPQELMYVK-TLETLILDFNDLTGEIPS 484

Query: 199 SLYYLKSLKHLDLEKNNLTGNVHDF---YQSLLVLNLGSNRFSGTLPCFAASAMSLTVLK 255
            L    +L  + L  N LTG +  +    ++L +L L +N FSG +P       SL  L 
Sbjct: 485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544

Query: 256 LDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPS 315
           L+ N   G IP  +         N         I       +K      +  +  G    
Sbjct: 545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN--DGMKKECHGAGNLLEFQGIRSE 602

Query: 316 KIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQ 375
           ++ + +        +++   + G          S+  L +S N+L G IP  IG++ YL 
Sbjct: 603 QLNRLS---TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLF 659

Query: 376 VIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGE 435
           +++L HN +SGSIP  +     L  L +++N L G I   + AL  L  +D+SNN +SG 
Sbjct: 660 ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP 719

Query: 436 IP 437
           IP
Sbjct: 720 IP 721

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  101 bits (253), Expect = 2e-22
 Identities = 44/203 (21%), Positives = 74/203 (36%), Gaps = 51/203 (25%)

Query: 403 VNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSL-- 460
              N     +   L +L  L+ L +SN+ I+G +        SL  +D S N+LSG +  
Sbjct: 60  KPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTT 118

Query: 461 NDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNL 520
             ++   + LK+                                          ++S N 
Sbjct: 119 LTSLGSCSGLKFL-----------------------------------------NVSSNT 137

Query: 521 LHGTIPK-GLFQLQGLEYLNLSFNFLDGQVP----GLYRLRSLRALDLSHNSLTGQIPGN 575
           L       G  +L  LE L+LS N + G              L+ L +S N ++G +   
Sbjct: 138 LDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-- 195

Query: 576 ISSLQELTLLNLSYNSFSGFVPW 598
           +S    L  L++S N+FS  +P+
Sbjct: 196 VSRCVNLEFLDVSSNNFSTGIPF 218

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.9 bits (133), Expect = 6e-08
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 538 LNLSFNFLDGQV----PGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFS 593
           ++LS   L+         L  L  L +L LS++ + G + G       LT L+LS NS S
Sbjct: 55  IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLS 113

Query: 594 GFVPWKQ 600
           G V    
Sbjct: 114 GPVTTLT 120

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  270 bits (693), Expect = 1e-81
 Identities = 84/567 (14%), Positives = 190/567 (33%), Gaps = 57/567 (10%)

Query: 68  NCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCF- 126
                 GV+ N   G V  ++L     SG+V   + +L+ LE L L S+           
Sbjct: 68  MWGAQPGVSLN-SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP 126

Query: 127 ---GGLSGLKTLDLSYNKFVGVVPDAIMKLR--NLRELILKGNPELGGVFPGWVGNFSMN 181
                    +        +     D   +    +L +  +  +P+   +        ++ 
Sbjct: 127 KGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSI-KKSSRI-TLK 184

Query: 182 LEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTL 241
             ++    N+    + +++  L  L+   +  +          ++    N    +   T 
Sbjct: 185 DTQIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAEN--ICEAWENENSEYAQQYKTE 241

Query: 242 PCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHL--------NYEISPRL 293
                +   LT +++ N   +  +PT + +L  +  +N++ N          +++     
Sbjct: 242 DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADA 301

Query: 294 VFFEKLLLLDLSFNDL-SGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQA 352
              EK+ ++ + +N+L + P+ + + +  +   L +L+  +N+  G++P        L +
Sbjct: 302 PVGEKIQIIYIGYNNLKTFPVETSLQKMKK---LGMLECLYNQLEGKLP-AFGSEIKLAS 357

Query: 353 LFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSG-SIPLNIVGCFQLLALIVNNNNLSG- 410
           L L+ N +        G    ++ +  +HN L       +      + A+  + N +   
Sbjct: 358 LNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSV 417

Query: 411 ------EIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSG------ 458
                  + P      ++  +++SNNQIS       +    L  ++   N L+       
Sbjct: 418 DGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSL 477

Query: 459 -SLNDAITKWTNLKYFSIARNKLSGNLPNWLF-SFQAIQMMDFSTNKFMGFIPDAVG--- 513
              N+       L    +  NKL+    ++   +   +  +D S N F    P       
Sbjct: 478 KDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSS 536

Query: 514 ----------MDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDL 563
                      D   N      P+G+     L  L +  N +      +    ++  LD+
Sbjct: 537 TLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDI 594

Query: 564 SHNSLTGQIPGNISSLQELTLLNLSYN 590
             N         +    E  +  L Y+
Sbjct: 595 KDNPNISIDLSYVCPYIEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  248 bits (635), Expect = 2e-73
 Identities = 92/596 (15%), Positives = 187/596 (31%), Gaps = 54/596 (9%)

Query: 45  ASLLLFKSLVQDPTQKLSSWVGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCK 104
             L      ++D       W   N  NW+      Q G   + N        Q    L  
Sbjct: 20  IKLSRTAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNS 79

Query: 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVG----VVPDAIMKLRNLRELI 160
              +  L L     +GR+    G L+ L+ L L  +          P  I    +  +  
Sbjct: 80  NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQ 139

Query: 161 LKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNV 220
                               +L K   + +     I +S         +    NN+T   
Sbjct: 140 KMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVS 199

Query: 221 HDFYQ--SLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHL 278
               +   L    +G++ F     C      +      +             +L+ LT +
Sbjct: 200 KAVMRLTKLRQFYMGNSPFVAENICE-----AWENENSEYAQQYKTEDLKWDNLKDLTDV 254

Query: 279 NLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGP-----LPSKIAQTTEKAGLVLLDLSH 333
            + +     ++   L    ++ L++++ N              +A       + ++ + +
Sbjct: 255 EVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY 314

Query: 334 NRF-SGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNI 392
           N   +  +   + ++K L  L    N L G++PA  G+   L  ++L++N ++  IP N 
Sbjct: 315 NNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITE-IPANF 372

Query: 393 VG-CFQLLALIVNNNNLSG-EIQPELDALDSLKILDISNNQISG-------EIPLTLAGL 443
            G   Q+  L   +N L       +  ++  +  +D S N+I          +  T    
Sbjct: 373 CGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432

Query: 444 KSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSG-------NLPNWLFSFQAIQM 496
            ++  ++ S+N +S    +  +  + L   ++  N L+        +      +   +  
Sbjct: 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTS 492

Query: 497 MDFSTNKFMGFIPDAVG--------MDLSDNLLHGTIPKGLFQLQGLEYL------NLSF 542
           +D   NK      D           +DLS N      P        L+        +   
Sbjct: 493 IDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQG 551

Query: 543 NFLDGQVP-GLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVP 597
           N    + P G+    SL  L +  N +   +   I     +++L++  N       
Sbjct: 552 NRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDL 604

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  206 bits (526), Expect = 5e-58
 Identities = 65/453 (14%), Positives = 141/453 (31%), Gaps = 62/453 (13%)

Query: 181 NLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFY-------QSLLVLNLG 233
            +  L        G +P+++  L  L+ L L  +    N   F         S       
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 234 SNRFSGTLP--CFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISP 291
              +  T            L    ++++     I          T +    N++   +S 
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-FVSK 200

Query: 292 RLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQ 351
            ++   KL    +  +        +  +          +  + +      LK   LK L 
Sbjct: 201 AVMRLTKLRQFYMGNSPFVAENICEAWE--------NENSEYAQQYKTEDLKWDNLKDLT 252

Query: 352 ALFLSNNLLIGEIPARIGNLTYLQVIDLSHNML--------SGSIPLNIVGCFQLLALIV 403
            + + N   + ++P  +  L  +Q+I+++ N                +     ++  + +
Sbjct: 253 DVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYI 312

Query: 404 NNNNL-SGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLND 462
             NNL +  ++  L  +  L +L+   NQ+ G++P        L  ++ + N ++    +
Sbjct: 313 GYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPAN 371

Query: 463 AITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLH 522
                  ++  S A NKL   +PN   +     M                  D S N + 
Sbjct: 372 FCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAI---------------DFSYNEIG 415

Query: 523 GTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQEL 582
               K    L                 P  ++  ++ +++LS+N ++       S+   L
Sbjct: 416 SVDGKNFDPLD----------------PTPFKGINVSSINLSNNQISKFPKELFSTGSPL 459

Query: 583 TLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNL 615
           + +NL  N  +         +     F     L
Sbjct: 460 SSINLMGNMLTEIPKNS--LKDENENFKNTYLL 490

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  260 bits (666), Expect = 2e-77
 Identities = 120/530 (22%), Positives = 198/530 (37%), Gaps = 43/530 (8%)

Query: 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
            + +  L L+ N      +  F   S L +LD+ +N    + P+   KL  L+ L L+ N
Sbjct: 24  PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83

Query: 165 PELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTG-NVHDF 223
             L  +        + NL +L    NS            K+L  LDL  N L+   +   
Sbjct: 84  E-LSQLSDKTFAFCT-NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ 141

Query: 224 YQ--SLLVLNLGSNRFSGTLP-CFAASA-MSLTVLKLDNNSVVGGIPTCIASLQALTHLN 279
            Q  +L  L L +N+            A  SL  L+L +N +    P C  ++  L  L 
Sbjct: 142 VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLF 201

Query: 280 LSHNHLNYEISPRLVFFE---KLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRF 336
           L++  L   ++ +L        +  L LS + LS    +      +   L +LDLS+N  
Sbjct: 202 LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST-TSNTTFLGLKWTNLTMLDLSYNNL 260

Query: 337 SGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLN----- 391
           +         L  L+  FL  N +       +  L  ++ ++L  +    SI L      
Sbjct: 261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKI 320

Query: 392 ----IVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGE--IPLTLAGL-- 443
                     L  L + +N++ G        L +LK L +SN+  S       T   L  
Sbjct: 321 DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH 380

Query: 444 KSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFS-FQAIQMMDFSTN 502
             L I++ + N +S   +DA +   +L+   +  N++   L    +   + I  +  S N
Sbjct: 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440

Query: 503 KFMGFIPDAVGM-------DLSDNLLHG--TIPKGLFQLQGLEYLNLSFNFLDGQVPG-L 552
           K++    ++  +        L    L    + P     L+ L  L+LS N +       L
Sbjct: 441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML 500

Query: 553 YRLRSLRALDLSHNSLT--------GQIPGNISSLQELTLLNLSYNSFSG 594
             L  L  LDL HN+L         G     +  L  L +LNL  N F  
Sbjct: 501 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE 550

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  256 bits (656), Expect = 5e-76
 Identities = 109/538 (20%), Positives = 192/538 (35%), Gaps = 39/538 (7%)

Query: 86  SINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGV 145
            +NL    LS          + L  L L SN+     +  F     L TLDLS+N     
Sbjct: 77  VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 136

Query: 146 VPDAIMKLRNLRELILKGNPELGGVFPGWVGNFS-MNLEKLDFSFNSFCGEIPESLYYLK 204
                ++L NL+EL+L  N ++  +    +  F+  +L+KL+ S N      P   + + 
Sbjct: 137 KLGTQVQLENLQELLLSNN-KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG 195

Query: 205 SLKHLDLEKNNLTGNVHDFYQ------SLLVLNLGSNRFSGTLPCFAAS--AMSLTVLKL 256
            L  L L    L  ++ +         S+  L+L +++ S T           +LT+L L
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255

Query: 257 DNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISP---------RLVFFEKLLLLDLSFN 307
             N++        A L  L +  L +N++ +  S           L          +S  
Sbjct: 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA 315

Query: 308 DLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLL-IGEIPA 366
            L                L  L++  N   G      T L +L+ L LSN+   +  +  
Sbjct: 316 SLPKIDDFSFQWLKC---LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTN 372

Query: 367 RIG---NLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQP-ELDALDSL 422
                   + L +++L+ N +S            L  L +  N +  E+   E   L+++
Sbjct: 373 ETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENI 432

Query: 423 KILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSG--SLNDAITKWTNLKYFSIARNKL 480
             + +S N+       + A + SL+ +      L    S         NL    ++ N +
Sbjct: 433 FEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI 492

Query: 481 SGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNL 540
           +    + L   + ++++D   N             L  +   G     L  L  L  LNL
Sbjct: 493 ANINDDMLEGLEKLEILDLQHNNLA---------RLWKHANPGGPIYFLKGLSHLHILNL 543

Query: 541 SFNFLDGQVPGLYR-LRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVP 597
             N  D     +++ L  L+ +DL  N+L        ++   L  LNL  N  +    
Sbjct: 544 ESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK 601

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  247 bits (633), Expect = 9e-73
 Identities = 115/552 (20%), Positives = 186/552 (33%), Gaps = 53/552 (9%)

Query: 86  SINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFG--GLSGLKTLDLSYNKFV 143
           +++L+   LS        +L  L+ L+LS+N      S        S LK L+LS N+  
Sbjct: 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184

Query: 144 GVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFS--MNLEKLDFSFNSFCGEIPESLY 201
              P     +  L  L L     LG      +       ++  L  S +        +  
Sbjct: 185 EFSPGCFHAIGRLFGLFLNNVQ-LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243

Query: 202 YLK--SLKHLDLEKNNLTGNVHDFYQ---SLLVLNLGSNRFSGTLPCFAASAMSLTVLKL 256
            LK  +L  LDL  NNL    +D +     L    L  N              ++  L L
Sbjct: 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 303

Query: 257 DNNSVVGGI---------PTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFN 307
             +     I               L+ L HLN+  N +    S        L  L LS +
Sbjct: 304 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363

Query: 308 DLS-GPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPA 366
             S   L ++   +   + L +L+L+ N+ S       + L  L+ L L  N +  E+  
Sbjct: 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423

Query: 367 R-IGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSG--EIQPELDALDSLK 423
           +    L  +  I LS+N        +      L  L++    L            L +L 
Sbjct: 424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483

Query: 424 ILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGN 483
           ILD+SNN I+      L GL+ LEI+D   NNL+                 + ++   G 
Sbjct: 484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA----------------RLWKHANPGG 527

Query: 484 LPNWLFSFQAIQMMDFSTNKFMGFIPDAVG-------MDLSDNLLHGTIPKGLFQLQGLE 536
              +L     + +++  +N F     +          +DL  N L+            L+
Sbjct: 528 PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLK 587

Query: 537 YLNLSFNFLDGQVPGLYR--LRSLRALDLSHNSLTGQIPG-----NISSLQELTLLNLSY 589
            LNL  N +      ++    R+L  LD+  N             N  +     +  LS 
Sbjct: 588 SLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSS 647

Query: 590 NSFSGFVPWKQG 601
           +      P   G
Sbjct: 648 HYLCNTPPHYHG 659

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  229 bits (585), Expect = 7e-66
 Identities = 94/469 (20%), Positives = 164/469 (34%), Gaps = 38/469 (8%)

Query: 177 NFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQ---SLLVLNLG 233
           +   N+  L+ + N        +      L  LD+  N ++    +  Q    L VLNL 
Sbjct: 22  DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81

Query: 234 SNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRL 293
            N  S       A   +LT L L +NS+           + L  L+LSHN L+       
Sbjct: 82  HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ 141

Query: 294 VFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQAL 353
           V  E L  L LS N +   L S+       + L  L+LS N+     P     +  L  L
Sbjct: 142 VQLENLQELLLSNNKIQA-LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGL 200

Query: 354 FLSNNLLIGEIPARIG---NLTYLQVIDLSHNMLSGSIPLNIVGCF--QLLALIVNNNNL 408
           FL+N  L   +  ++      T ++ + LS++ LS +     +G     L  L ++ NNL
Sbjct: 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260

Query: 409 SGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLND------ 462
           +         L  L+   +  N I      +L GL ++  ++   +    S++       
Sbjct: 261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKI 320

Query: 463 ---AITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGM----- 514
              +      L++ ++  N + G   N       ++ +  S +                 
Sbjct: 321 DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH 380

Query: 515 ------DLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG--LYRLRSLRALDLSHN 566
                 +L+ N +          L  LE L+L  N +  ++ G     L ++  + LS+N
Sbjct: 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440

Query: 567 SLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNL 615
                   + + +  L  L L   +              P  F    NL
Sbjct: 441 KYLQLTRNSFALVPSLQRLMLRRVALKNV-------DSSPSPFQPLRNL 482

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  203 bits (519), Expect = 1e-56
 Identities = 105/439 (23%), Positives = 166/439 (37%), Gaps = 39/439 (8%)

Query: 205 SLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGG 264
           S +  D     LT    D   ++ VLNL  N+              LT L +  N++   
Sbjct: 5   SHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL 64

Query: 265 IPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKA 324
            P     L  L  LNL HN L+        F   L  L L  N +     +   +     
Sbjct: 65  EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN-- 122

Query: 325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPA--RIGNLTYLQVIDLSHN 382
            L+ LDLSHN  S        +L++LQ L LSNN +         I   + L+ ++LS N
Sbjct: 123 -LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181

Query: 383 MLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPEL---DALDSLKILDISNNQISGEIPLT 439
            +    P       +L  L +NN  L   +  +L    A  S++ L +SN+Q+S     T
Sbjct: 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241

Query: 440 LAGLK--SLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMM 497
             GLK  +L ++D S NNL+   ND+      L+YF +  N +     + L     ++ +
Sbjct: 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301

Query: 498 DFSTNKFMGFIPDA----------------VGMDLSDNLLHGTIPKGLFQLQGLEYLNLS 541
           +   +     I  A                  +++ DN + G        L  L+YL+LS
Sbjct: 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS 361

Query: 542 FNFLDGQVPGLYRLRS-----LRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFV 596
            +F   +        S     L  L+L+ N ++       S L  L +L+L  N     +
Sbjct: 362 NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421

Query: 597 PWKQGYQKFPGAFAGNPNL 615
                       + G  N+
Sbjct: 422 T--------GQEWRGLENI 432

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  198 bits (505), Expect = 7e-55
 Identities = 84/409 (20%), Positives = 143/409 (34%), Gaps = 29/409 (7%)

Query: 78  NFQTGHVVSINLTDTSLSGQVHP--RLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTL 135
                 + +++L+++ LS   +      K + L  L LS N      +  F  L  L+  
Sbjct: 218 ELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYF 277

Query: 136 DLSYNKFVGVVPDAIMKLRNLRELILKGN--------PELGGVFPGWVGNFSMNLEKLDF 187
            L YN    +   ++  L N+R L LK +          L  +           LE L+ 
Sbjct: 278 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK-CLEHLNM 336

Query: 188 SFNSFCGEIPESLYYLKSLKHLDLEKNNLTGN-------VHDFYQSLLVLNLGSNRFSGT 240
             N   G        L +LK+L L  +  +         V   +  L +LNL  N+ S  
Sbjct: 337 EDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI 396

Query: 241 LPCFAASAMSLTVLKLDNNSVVGGIP-TCIASLQALTHLNLSHNHLNYEISPRLVFFEKL 299
                +    L VL L  N +   +       L+ +  + LS+N               L
Sbjct: 397 ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSL 456

Query: 300 LLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNL 359
             L L    L   + S  +       L +LDLS+N  +      +  L+ L+ L L +N 
Sbjct: 457 QRLMLRRVALKN-VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN 515

Query: 360 L--------IGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGE 411
           L         G     +  L++L +++L  N             F+L  + +  NNL+  
Sbjct: 516 LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTL 575

Query: 412 IQPELDALDSLKILDISNNQISGEIPLTLA-GLKSLEIVDFSSNNLSGS 459
                +   SLK L++  N I+           ++L  +D   N    +
Sbjct: 576 PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  123 bits (312), Expect = 1e-29
 Identities = 48/239 (20%), Positives = 84/239 (35%), Gaps = 16/239 (6%)

Query: 372 TYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQ 431
              +V D SH  L+  +P ++     +  L + +N L             L  LD+  N 
Sbjct: 4   VSHEVADCSHLKLT-QVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 432 ISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSF 491
           IS   P     L  L++++   N LS   +      TNL    +  N +     N     
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 492 QAIQMMDFSTNKFMGFIPDAVG-------MDLSDNLLHGTIPK--GLFQLQGLEYLNLSF 542
           + +  +D S N                  + LS+N +     +   +F    L+ L LS 
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180

Query: 543 NFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNIS---SLQELTLLNLSYNSFSGFVP 597
           N +    PG  + +  L  L L++  L   +   +    +   +  L+LS +  S    
Sbjct: 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN 239

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  245 bits (627), Expect = 1e-72
 Identities = 110/532 (20%), Positives = 184/532 (34%), Gaps = 35/532 (6%)

Query: 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
            +  E L  S N      +T F  L  L  LDL+  +   +  D       L  L+L  N
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 165 PELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTG-NVHDF 223
           P L  +    +      L+ L F            L+  K+L+ L L  N+++   +   
Sbjct: 92  P-LIFMAETALSGPK-ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKG 149

Query: 224 YQ--SLLVLNLGSNRFSGTLPCFAASAMSLTVLKLD-NNSVVGGIPTCIASLQALTHLNL 280
           +    L VL+  +N          +S    T L L+ N + + GI            LN 
Sbjct: 150 FPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNF 209

Query: 281 SHNHLNYEISPRLVF--FEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSG 338
                   I   L     + L L      D     P+       +  +  ++L  + F  
Sbjct: 210 GGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC-EMSVESINLQKHYFFN 268

Query: 339 EIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQL 398
                      LQ L L+    + E+P+ +  L+ L+ + LS N       ++      L
Sbjct: 269 ISSNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSL 327

Query: 399 LALIVNNNNLSGEIQPE-LDALDSLKILDISNNQI--SGEIPLTLAGLKSLEIVDFSSNN 455
             L +  N    E+    L+ L++L+ LD+S++ I  S    L L  L  L+ ++ S N 
Sbjct: 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE 387

Query: 456 LSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFS-FQAIQMMDFSTNKFMGFIPDAVG- 513
                 +A  +   L+   +A  +L        F     +++++ S +            
Sbjct: 388 PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG 447

Query: 514 ------MDLSDNLLHGTIPKGLFQLQG---LEYLNLSFNFLDGQVPGLYR-LRSLRALDL 563
                 ++L  N       +    LQ    LE L LSF  L       +  L+ +  +DL
Sbjct: 448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507

Query: 564 SHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNL 615
           SHN LT      +S L+ +  LNL+ N  S            P         
Sbjct: 508 SHNRLTSSSIEALSHLKGIY-LNLASNHISII---------LPSLLPILSQQ 549

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  223 bits (570), Expect = 2e-64
 Identities = 96/505 (19%), Positives = 175/505 (34%), Gaps = 32/505 (6%)

Query: 102 LCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELIL 161
                 L+ LVL++N       T   G   LK L         +    +   + L  L L
Sbjct: 77  FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL 136

Query: 162 KGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKH--LDLEKNNLTGN 219
             N  +  +           L+ LDF  N+      E +  L+   +  L+L  N++ G 
Sbjct: 137 GSN-HISSIKLPKGFPTE-KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGI 194

Query: 220 VHDFYQ--SLLVLNLGSNRFSGTLP--CFAASAMSLTVLKLDNNSVVGGIPTCIASLQA- 274
               +       LN G  +    +      ++  SL +   ++       P     L   
Sbjct: 195 EPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM 254

Query: 275 -LTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSH 333
            +  +NL  ++     S     F  L  LDL+   LS  LPS +   +    L  L LS 
Sbjct: 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLST---LKKLVLSA 310

Query: 334 NRFSGEIPLKITELKSLQALFLSNNLLIGEIPAR-IGNLTYLQVIDLSHNML--SGSIPL 390
           N+F     +  +   SL  L +  N    E+    + NL  L+ +DLSH+ +  S    L
Sbjct: 311 NKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL 370

Query: 391 NIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLT-LAGLKSLEIV 449
            +     L +L ++ N               L++LD++  ++  +   +    L  L+++
Sbjct: 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430

Query: 450 DFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIP 509
           + S + L  S          L++ ++  N           S Q +  ++           
Sbjct: 431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI---------- 480

Query: 510 DAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLT 569
               + LS   L          L+ + +++LS N L               L+L+ N ++
Sbjct: 481 ----LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHIS 536

Query: 570 GQIPGNISSLQELTLLNLSYNSFSG 594
             +P  +  L +   +NL  N    
Sbjct: 537 IILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  204 bits (522), Expect = 1e-57
 Identities = 90/529 (17%), Positives = 171/529 (32%), Gaps = 48/529 (9%)

Query: 83  HVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKF 142
            + ++ LT   L       L     L+ L       +            L++L L  N  
Sbjct: 82  RLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHI 141

Query: 143 VGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNF-SMNLEKLDFSFNSFCGEIPESLY 201
             +          L+ L  + N  +  +    + +        L+ + N     I    +
Sbjct: 142 SSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMSSLQQATNLSLNLNGNDI-AGIEPGAF 199

Query: 202 YLKSLKHLDLEKNNLT-----GNVHDFYQSLLVLNLGSNRFSGTLPCFAA--SAMSLTVL 254
                + L+            G  +   QSL +            P        MS+  +
Sbjct: 200 DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI 259

Query: 255 KLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLP 314
            L  +               L  L+L+  HL+ E+   LV    L  L LS N       
Sbjct: 260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQ 318

Query: 315 SKIAQTTEKAGLVLLDLSHNRFSGEIPLK-ITELKSLQALFLSNNLL--IGEIPARIGNL 371
              +       L  L +  N    E+    +  L++L+ L LS++ +        ++ NL
Sbjct: 319 ISASNFPS---LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375

Query: 372 TYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPE-LDALDSLKILDISNN 430
           ++LQ ++LS+N            C QL  L +    L  +        L  LK+L++S++
Sbjct: 376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435

Query: 431 QISGEIPLTLAGLKSLEIVDFSSNNLSG---SLNDAITKWTNLKYFSIARNKLSGNLPNW 487
            +         GL +L+ ++   N+         +++     L+   ++   LS    + 
Sbjct: 436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA 495

Query: 488 LFSFQAIQMMDFSTNKFMGFIPDAVGM------DLSDNLLHGTIPKGLFQLQGLEYLNLS 541
             S + +  +D S N+      +A+        +L+ N +   +P  L  L     +NL 
Sbjct: 496 FTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLR 555

Query: 542 FN-------------FLDGQVPGLYRLR--------SLRALDLSHNSLT 569
            N             +    +  L             LR + LS  +L+
Sbjct: 556 QNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  159 bits (404), Expect = 1e-41
 Identities = 63/351 (17%), Positives = 114/351 (32%), Gaps = 26/351 (7%)

Query: 277 HLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRF 336
             N  +  LN EI   L        L+ SFN L     +  ++      L  LDL+  + 
Sbjct: 16  TYNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLIN---LTFLDLTRCQI 69

Query: 337 SGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCF 396
                        L  L L+ N LI      +     L+ +      +S    + +    
Sbjct: 70  YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK 129

Query: 397 QLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFS-SNN 455
            L +L + +N++S    P+    + LK+LD  NN I       ++ L+    +  + + N
Sbjct: 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189

Query: 456 LSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLF--SFQAIQMMDFSTNKFMGFIPDAVG 513
               +          +  +    +    +   L   + Q++ +  F         P    
Sbjct: 190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249

Query: 514 ---------MDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLS 564
                    ++L  +              GL+ L+L+   L     GL  L +L+ L LS
Sbjct: 250 GLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLS 309

Query: 565 HNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNL 615
            N        + S+   LT L++  N+    +          G      NL
Sbjct: 310 ANKFENLCQISASNFPSLTHLSIKGNTKRLELG--------TGCLENLENL 352

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  227 bits (581), Expect = 4e-69
 Identities = 84/298 (28%), Positives = 133/298 (44%), Gaps = 33/298 (11%)

Query: 329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGE--IPARIGNLTYLQVIDLSHNMLSG 386
            D  +  + G +    T+   +  L LS   L     IP+ + NL YL  + +       
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIG------ 84

Query: 387 SIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSL 446
                              NNL G I P +  L  L  L I++  +SG IP  L+ +K+L
Sbjct: 85  -----------------GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127

Query: 447 EIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQA-IQMMDFSTNKFM 505
             +DFS N LSG+L  +I+   NL   +   N++SG +P+   SF      M  S N+  
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187

Query: 506 GFIPDAVG------MDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLR 559
           G IP          +DLS N+L G         +  + ++L+ N L   +  +   ++L 
Sbjct: 188 GKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLN 247

Query: 560 ALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPG-AFAGNPNLC 616
            LDL +N + G +P  ++ L+ L  LN+S+N+  G +P     Q+F   A+A N  LC
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  206 bits (527), Expect = 2e-61
 Identities = 79/282 (28%), Positives = 122/282 (43%), Gaps = 14/282 (4%)

Query: 302 LDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGE--IPLKITELKSLQALFLSN-N 358
            D       G L     QT     +  LDLS         IP  +  L  L  L++   N
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYR---VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN 87

Query: 359 LLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDA 418
            L+G IP  I  LT L  + ++H  +SG+IP  +     L+ L  + N LSG + P + +
Sbjct: 88  NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147

Query: 419 LDSLKILDISNNQISGEIPLTLAGLKSL-EIVDFSSNNLSGSLNDAITKWTNLKYFSIAR 477
           L +L  +    N+ISG IP +      L   +  S N L+G +        NL +  ++R
Sbjct: 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSR 206

Query: 478 NKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGM------DLSDNLLHGTIPKGLFQ 531
           N L G+      S +  Q +  + N     +            DL +N ++GT+P+GL Q
Sbjct: 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266

Query: 532 LQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIP 573
           L+ L  LN+SFN L G++P    L+       ++N      P
Sbjct: 267 LKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  193 bits (492), Expect = 3e-56
 Identities = 70/284 (24%), Positives = 122/284 (42%), Gaps = 12/284 (4%)

Query: 183 EKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQ-----SLLVLNL-GSNR 236
              D    ++ G + ++      + +LDL   NL               L  L + G N 
Sbjct: 29  PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88

Query: 237 FSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFF 296
             G +P   A    L  L + + +V G IP  ++ ++ L  L+ S+N L+  + P +   
Sbjct: 89  LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148

Query: 297 EKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLS 356
             L+ +    N +SG +P      ++      + +S NR +G+IP     L +L  + LS
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKL--FTSMTISRNRLTGKIPPTFANL-NLAFVDLS 205

Query: 357 NNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPEL 416
            N+L G+     G+    Q I L+ N L+  +   +     L  L + NN + G +   L
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGL 264

Query: 417 DALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNN-LSGS 459
             L  L  L++S N + GEIP     L+  ++  +++N  L GS
Sbjct: 265 TQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGS 307

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  178 bits (455), Expect = 4e-51
 Identities = 84/313 (26%), Positives = 135/313 (43%), Gaps = 42/313 (13%)

Query: 40  NLEDKASLLLFKSLVQDPTQKLSSWVGSN---CTNWTGVACNF--QTGHVVSINLTDTSL 94
           N +DK +LL  K  + +PT  LSSW+ +       W GV C+   QT  V +++L+  +L
Sbjct: 4   NPQDKQALLQIKKDLGNPTT-LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL 62

Query: 95  SGQVH---------------------------PRLCKLSFLEFLVLSSNAFTGRISTCFG 127
                                           P + KL+ L +L ++    +G I     
Sbjct: 63  PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122

Query: 128 GLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDF 187
            +  L TLD SYN   G +P +I  L NL  +   GN  + G  P   G+FS     +  
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGAIPDSYGSFSKLFTSMTI 181

Query: 188 SFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFY---QSLLVLNLGSNRFSGTLPCF 244
           S N   G+IP +   L +L  +DL +N L G+    +   ++   ++L  N  +  L   
Sbjct: 182 SRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV 240

Query: 245 AASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDL 304
              + +L  L L NN + G +P  +  L+ L  LN+S N+L  EI P+    ++  +   
Sbjct: 241 -GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAY 298

Query: 305 SFNDL--SGPLPS 315
           + N      PLP+
Sbjct: 299 ANNKCLCGSPLPA 311

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  241 bits (616), Expect = 4e-69
 Identities = 93/591 (15%), Positives = 188/591 (31%), Gaps = 65/591 (10%)

Query: 50  FKSLVQDPTQKLSSWVGSN----CTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKL 105
           + S   + T    +W  +       +  GV  +   G V  ++L      G+V   + +L
Sbjct: 288 YYSGTINNTIHSLNWNFNKELDMWGDQPGVDLD-NNGRVTGLSLAGFGAKGRVPDAIGQL 346

Query: 106 SFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVP------DAIMKLRNLREL 159
           + L+ L   +++ T                +   ++            D  + L +L + 
Sbjct: 347 TELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD 406

Query: 160 ILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGN 219
            +  NPE+  +      +      ++    N     I +++  L  L+ +    +  T +
Sbjct: 407 AINRNPEMKPIKKDSRISLKDT--QIGNLTNRI-TFISKAIQRLTKLQIIYFANSPFTYD 463

Query: 220 VHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLN 279
                      N    +         ++   LT ++L N   +  +P  +  L  L  LN
Sbjct: 464 NIA--VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLN 521

Query: 280 LSHNHLNY---------EISPRLVFFEKLLLLDLSFNDLSG-PLPSKIAQTTEKAGLVLL 329
           ++ N              ++       K+ +  + +N+L   P  + + +  +   L LL
Sbjct: 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVK---LGLL 578

Query: 330 DLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIG-NLTYLQVIDLSHNMLSGSI 388
           D  HN+    +         L  L L  N +  EIP         ++ +  SHN L   I
Sbjct: 579 DCVHNKVR-HLEA-FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YI 634

Query: 389 P--LNIVGCFQLLALIVNNNNLSGE-----IQPELDALDSLKILDISNNQISGEIPLTLA 441
           P   N    + + ++  + N +  E        +     +   + +S N+I        A
Sbjct: 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFA 694

Query: 442 GLKSLEIVDFSSNNLS-------GSLNDAITKWTNLKYFSIARNKLSGNLPNWLFS-FQA 493
               +  +  S+N ++          +        L    +  NKL+    ++  +    
Sbjct: 695 TGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPY 754

Query: 494 IQMMDFSTNKFMGFIPDAVG-------------MDLSDNLLHGTIPKGLFQLQGLEYLNL 540
           +  MD S N F    P                  D   N +    P G+     L  L +
Sbjct: 755 LSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813

Query: 541 SFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNS 591
             N +      L     L  LD++ N        ++    E  +  L Y+ 
Sbjct: 814 GSNDIRKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  208 bits (531), Expect = 2e-57
 Identities = 80/534 (14%), Positives = 163/534 (30%), Gaps = 68/534 (12%)

Query: 116 NAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWV 175
           + +  +          +  L L+     G VPDAI +L  L+ L    + E         
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS--GRLF 366

Query: 176 GNFSMNLEKLDFSFNSFCGEIPE-SLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGS 234
           G+  +  +  +   +       +  L Y + L   DL ++ +  N         +  +  
Sbjct: 367 GDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN-------PEMKPIKK 419

Query: 235 NRFSGTLPCFAASAMSLTVLKLDNNS-VVGGIPTCIASLQALTHLNLSHNHLNYEISPRL 293
           +              SL   ++ N +  +  I   I  L  L  +  +++   Y+     
Sbjct: 420 DSRI-----------SLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIA-- 466

Query: 294 VFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQAL 353
                    +  +           +   +   L  ++L +     ++P  + +L  LQ+L
Sbjct: 467 ---VDWEDANSDYAKQYENEELSWSNLKD---LTDVELYNCPNMTQLPDFLYDLPELQSL 520

Query: 354 FLSNNLLIG---------EIPARIGNLTYLQVIDLSHNMLSG-SIPLNIVGCFQLLALIV 403
            ++ N  I           +         +Q+  + +N L       ++    +L  L  
Sbjct: 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDC 580

Query: 404 NNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDA 463
            +N +   +         L  L +  NQI        A    +E + FS N L    N  
Sbjct: 581 VHNKVR-HL-EAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIF 638

Query: 464 -ITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMM-----DFSTNKFMGFIPDAVGM--- 514
                  +     + NK+     N   S    + +       S N+   F  +       
Sbjct: 639 NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSP 698

Query: 515 ----DLSDNLL-------HGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLY--RLRSLRAL 561
                LS+NL+                    L  ++L FN L           L  L  +
Sbjct: 699 ISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNM 758

Query: 562 DLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNL 615
           D+S+N  +   P    +  +L    + +   +      +  +++P      P+L
Sbjct: 759 DVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAE---GNRILRQWPTGITTCPSL 808

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  199 bits (507), Expect = 2e-54
 Identities = 78/511 (15%), Positives = 166/511 (32%), Gaps = 61/511 (11%)

Query: 129 LSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFS 188
            +  + LD    ++     +  +   N          ++ G  PG   + +  +  L  +
Sbjct: 275 KAIWEALDGKNWRYYSGTINNTIHSLNWN---FNKELDMWGDQPGVDLDNNGRVTGLSLA 331

Query: 189 FNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTL----PCF 244
                G +P+++  L  LK L    ++ T +   F    L  ++   R           F
Sbjct: 332 GFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMF 391

Query: 245 AASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNY------EISPRLVFFEK 298
                 L +  L  +++       +  ++  + ++L    +         IS  +    K
Sbjct: 392 LDYDQRLNLSDLLQDAINRNPE--MKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTK 449

Query: 299 LLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNN 358
           L ++  + +  +    +              +  + +      L  + LK L  + L N 
Sbjct: 450 LQIIYFANSPFTYDNIA--------VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC 501

Query: 359 LLIGEIPARIGNLTYLQVIDLSHNMLSG---------SIPLNIVGCFQLLALIVNNNNLS 409
             + ++P  + +L  LQ ++++ N              +  +     ++    +  NNL 
Sbjct: 502 PNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561

Query: 410 G-EIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWT 468
                  L  +  L +LD  +N++   +         L  +    N +     D      
Sbjct: 562 EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTD 619

Query: 469 NLKYFSIARNKLSGNLPNWLF--SFQAIQMMDFSTNKFMGFIPDAVGM------------ 514
            ++    + NKL   +PN     S   +  +DFS NK      +                
Sbjct: 620 QVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV 678

Query: 515 DLSDNLLHGTIPKGLFQLQGLEYLNLSFNFL--------DGQVPGLYRLRSLRALDLSHN 566
            LS N +     +       +  + LS N +          +         L  +DL  N
Sbjct: 679 TLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN 738

Query: 567 SLTGQIPGNI--SSLQELTLLNLSYNSFSGF 595
            LT  +  +   ++L  L+ +++SYN FS F
Sbjct: 739 KLTS-LSDDFRATTLPYLSNMDVSYNCFSSF 768

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 98.4 bits (245), Expect = 2e-21
 Identities = 32/230 (13%), Positives = 65/230 (28%), Gaps = 26/230 (11%)

Query: 102 LCKLSFLEFLVLSSNAFTGRISTCFGGLSG-----LKTLDLSYNKFVGVVPDAIMKLRNL 156
              +  +  +  S N            +         T+ LSYN+      +       +
Sbjct: 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPI 699

Query: 157 RELILKGN------PELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYY--LKSLKH 208
             +IL  N              G   N    L  +D  FN     + +      L  L +
Sbjct: 700 STIILSNNLMTSIPENSLKPKDGNYKNTY-LLTTIDLRFNKL-TSLSDDFRATTLPYLSN 757

Query: 209 LDLEKNNLTGNVHDFYQ--SLLVLNL------GSNRFSGTLPCFAASAMSLTVLKLDNNS 260
           +D+  N  +           L    +        NR     P    +  SL  L++ +N 
Sbjct: 758 MDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND 817

Query: 261 VVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLS 310
           +   +   +     L  L+++ N         +  + +  +  L ++   
Sbjct: 818 I-RKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  233 bits (597), Expect = 2e-68
 Identities = 104/543 (19%), Positives = 182/543 (33%), Gaps = 43/543 (7%)

Query: 86  SINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGV 145
            ++L+   +          LS L  L+L+ N         F GLS L+ L         +
Sbjct: 56  VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 115

Query: 146 VPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKS 205
               I  L+ L+EL +  N       P +  N + NLE LD S N         L  L  
Sbjct: 116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-NLEHLDLSSNKIQSIYCTDLRVLHQ 174

Query: 206 LK----HLDLEKNNLTGNVHDFYQ--SLLVLNLGSNRFSGTLPCFAASAMS-LTVLKLDN 258
           +      LDL  N +       ++   L  L L +N  S  +       ++ L V +L  
Sbjct: 175 MPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234

Query: 259 NSVVGGI---PTCIASLQALTHLNLSHNHLNY------EISPRLVFFEKLLLLDLSFNDL 309
                         ++L+ L +L +    L Y      +I         +    L    +
Sbjct: 235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294

Query: 310 SGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIG 369
                      +   G   L+L + +F     LK+  LK L            E+     
Sbjct: 295 ERVKDF-----SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV----- 344

Query: 370 NLTYLQVIDLSHNMLS--GSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDI 427
           +L  L+ +DLS N LS  G    +  G   L  L ++ N +   +      L+ L+ LD 
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDF 403

Query: 428 SNNQISGEIPL-TLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPN 486
            ++ +           L++L  +D S  +   + N      ++L+   +A N    N   
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463

Query: 487 WLFS-FQAIQMMDFSTNKFMGFIPDAVG-------MDLSDNLLHGTIPKGLFQLQGLEYL 538
            +F+  + +  +D S  +     P A         +++S N            L  L+ L
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 523

Query: 539 NLSFNFLDGQVPGLYR--LRSLRALDLSHNSLTGQIPGN--ISSLQELTLLNLSYNSFSG 594
           + S N +        +    SL  L+L+ N           +  +++   L +       
Sbjct: 524 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMEC 583

Query: 595 FVP 597
             P
Sbjct: 584 ATP 586

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  231 bits (590), Expect = 3e-67
 Identities = 110/538 (20%), Positives = 174/538 (32%), Gaps = 35/538 (6%)

Query: 83  HVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKF 142
              +++L+   L             L+ L LS           +  LS L TL L+ N  
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 143 VGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSF-CGEIPESLY 201
             +   A   L +L++L+      L  +    +G+    L++L+ + N     ++PE   
Sbjct: 89  QSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLK-TLKELNVAHNLIQSFKLPEYFS 146

Query: 202 YLKSLKHLDLEKNNLTGNVHDFYQSL-------LVLNLGSNRFSGTLPCFAASAMSLTVL 254
            L +L+HLDL  N +        + L       L L+L  N  +  +   A   + L  L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKL 205

Query: 255 KLDNNSVVGGIP-TCIASLQALTHLNLSHNHLNYEISPRLVFF------EKLLLLDLSFN 307
            L NN     +  TCI  L  L    L       E +              L + +    
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 308 DLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPAR 367
            L   L   I        +    L             +     Q L L N         +
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF--SYNFGWQHLELVNCKFGQFPTLK 323

Query: 368 IGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDI 427
           + +L  L     + N    +     +   + L L  N  +  G          SLK LD+
Sbjct: 324 LKSLKRL---TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380

Query: 428 SNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLN-DAITKWTNLKYFSIARNKLSGNLPN 486
           S N +   +     GL+ LE +DF  +NL             NL Y  I+          
Sbjct: 381 SFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439

Query: 487 WLFSFQAIQMMDFSTNKFMGFIPDAVGM--------DLSDNLLHGTIPKGLFQLQGLEYL 538
                 +++++  + N F       +          DLS   L    P     L  L+ L
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499

Query: 539 NLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQE-LTLLNLSYNSFSG 594
           N+S N            L SL+ LD S N +       +      L  LNL+ N F+ 
Sbjct: 500 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  223 bits (570), Expect = 2e-64
 Identities = 106/514 (20%), Positives = 177/514 (34%), Gaps = 52/514 (10%)

Query: 130 SGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSF 189
              K LDLS+N    +   +      L+ L L    E+  +  G   + S +L  L  + 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLS-HLSTLILTG 85

Query: 190 NSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQ---SLLVLNLGSNRF-SGTLPCFA 245
           N        +   L SL+ L   + NL    +       +L  LN+  N   S  LP + 
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 246 ASAMSLTVLKLDNNSVVGGIPTCIASLQALT----HLNLSHNHLNYEISPRLVFFEKLLL 301
           ++  +L  L L +N +     T +  L  +      L+LS N +N  I P      +L  
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHK 204

Query: 302 LDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQAL-------- 353
           L L  N  S  +     Q    AGL +  L    F  E  L+  +  +L+ L        
Sbjct: 205 LTLRNNFDSLNVMKTCIQGL--AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 354 -FLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNN------- 405
                +  + +I      LT +    L    +      +    +Q L L+          
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL 322

Query: 406 ----------NNLSGEIQPELDALDSLKILDISNNQIS--GEIPLTLAGLKSLEIVDFSS 453
                      +  G        L SL+ LD+S N +S  G    +  G  SL+ +D S 
Sbjct: 323 KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382

Query: 454 NNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLF-SFQAIQMMDFSTNKFMGFIPDAV 512
           N +   ++        L++     + L       +F S + +  +D S            
Sbjct: 383 NGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441

Query: 513 G-------MDLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDL 563
                   + ++ N         +F  L+ L +L+LS   L+   P     L SL+ L++
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501

Query: 564 SHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVP 597
           SHN+           L  L +L+ S N       
Sbjct: 502 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 535

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  193 bits (492), Expect = 2e-53
 Identities = 87/448 (19%), Positives = 145/448 (32%), Gaps = 35/448 (7%)

Query: 177 NFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQ---SLLVLNLG 233
           N   + + LD SFN        S +    L+ LDL +  +       YQ    L  L L 
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 234 SNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNY-EISPR 292
            N          +   SL  L     ++       I  L+ L  LN++HN +   ++   
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 293 LVFFEKLLLLDLSFNDLSGPLPSKIAQTTE-KAGLVLLDLSHNRFSGEIPLKITELKSLQ 351
                 L  LDLS N +     + +    +     + LDLS N  +  I     +   L 
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLH 203

Query: 352 ALFLSNNLLIGEIPAR-IGNLTYLQVIDLSHNMLSGSIPL---NIVGCFQLLALIVNNNN 407
            L L NN     +    I  L  L+V  L          L   +      L  L +    
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 408 LS------GEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLN 461
           L+       +I    + L ++    + +  I        +     + ++  +        
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPT 321

Query: 462 DAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNK--FMGFIPDAVG------ 513
             +     L +         G          +++ +D S N   F G    +        
Sbjct: 322 LKLKSLKRLTF-----TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376

Query: 514 -MDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG--LYRLRSLRALDLSHNSLTG 570
            +DLS N +  T+      L+ LE+L+   + L           LR+L  LD+SH     
Sbjct: 377 YLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435

Query: 571 QIPGNISSLQELTLLNLSYNSFSGFVPW 598
              G  + L  L +L ++ NSF      
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLP 463

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  182 bits (465), Expect = 8e-50
 Identities = 85/390 (21%), Positives = 135/390 (34%), Gaps = 22/390 (5%)

Query: 85  VSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRI-STCFGGLSGLKTLDLSYNKFV 143
           +S++L+   ++  + P   K   L  L L +N  +  +  TC  GL+GL+   L   +F 
Sbjct: 180 LSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 144 G------VVPDAIMKLRNLR--ELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGE 195
                      A+  L NL   E  L                 + N+        +    
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT-NVSSFSLVSVTIERV 297

Query: 196 IPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLK 255
              S  Y    +HL+L             +SL  L   SN+             SL  L 
Sbjct: 298 KDFS--YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLD 353

Query: 256 LDNN--SVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPL 313
           L  N  S  G          +L +L+LS N +   +S   +  E+L  LD   ++L    
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMS 412

Query: 314 PSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARI-GNLT 372
              +  +     L+ LD+SH             L SL+ L ++ N         I   L 
Sbjct: 413 EFSVFLSLRN--LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470

Query: 373 YLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQI 432
            L  +DLS   L    P        L  L +++NN           L+SL++LD S N I
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530

Query: 433 SGEIPLTLAGL-KSLEIVDFSSNNLSGSLN 461
                  L     SL  ++ + N+ + +  
Sbjct: 531 MTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.5 bits (142), Expect = 4e-09
 Identities = 22/130 (16%), Positives = 42/130 (32%), Gaps = 2/130 (1%)

Query: 83  HVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKF 142
           ++  ++L+   L          LS L+ L +S N F    +  +  L+ L+ LD S N  
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530

Query: 143 VGVVPDAIMKL-RNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLY 201
           +      +     +L  L L  N             +  +  +L           P    
Sbjct: 531 MTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK- 589

Query: 202 YLKSLKHLDL 211
               +  L++
Sbjct: 590 QGMPVLSLNI 599

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  216 bits (551), Expect = 1e-61
 Identities = 108/521 (20%), Positives = 175/521 (33%), Gaps = 43/521 (8%)

Query: 102 LCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELIL 161
               S L++L LS           + GL  L  L L+ N      P +   L +L  L+ 
Sbjct: 52  FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111

Query: 162 KGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCG-EIPESLYYLKSLKHLDLEKNNLTG-- 218
               +L  +    +G     L+KL+ + N     ++P     L +L H+DL  N +    
Sbjct: 112 VET-KLASLESFPIGQLI-TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169

Query: 219 -----NVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIP-TCIASL 272
                 + +  Q  L L++  N     +   A   + L  L L  N     I  TC+ +L
Sbjct: 170 VNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNL 228

Query: 273 QALTHLNLSHNHL----NYEISPRLVFFE----KLLLLDLSFNDLSGPLPSKIAQTTEKA 324
             L    L         N EI    +        +    L++ +       K        
Sbjct: 229 AGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLAN-- 286

Query: 325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNML 384
            +  + L+           + +    Q+L +     + + P    +L +L+ + L+ N  
Sbjct: 287 -VSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQ-LKQFPT--LDLPFLKSLTLTMNKG 340

Query: 385 SGSIPLNIVGCFQLLALIVNNNNLS--GEIQPELDALDSLKILDISNNQISGEIPLTLAG 442
           S  I    V    L  L ++ N LS  G         +SL+ LD+S N     +     G
Sbjct: 341 S--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMG 397

Query: 443 LKSLEIVDFSSNNLSGSLN-DAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFST 501
           L+ L+ +DF  + L       A      L Y  I+      +         ++  +  + 
Sbjct: 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 457

Query: 502 NKFMGFIPDAVGM--------DLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLY 553
           N F       V          DLS   L          L  L+ LN+S N L       Y
Sbjct: 458 NSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHY 517

Query: 554 R-LRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFS 593
             L SL  LD S N +           + L   NL+ NS +
Sbjct: 518 NQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  214 bits (548), Expect = 2e-61
 Identities = 99/519 (19%), Positives = 178/519 (34%), Gaps = 37/519 (7%)

Query: 106 SFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNP 165
           S  + + LS N      S  F   S L+ LDLS  +   +   A   L +L  LIL GNP
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 166 ELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTG-NVHDFY 224
            +    PG     + +LE L              +  L +LK L++  N +    +  ++
Sbjct: 92  -IQSFSPGSFSGLT-SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYF 149

Query: 225 Q---SLLVLNLGSNRFSG----TLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTH 277
               +L+ ++L  N         L     +      L +  N +          ++ L  
Sbjct: 150 SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHE 208

Query: 278 LNLSHNHLNYEISPRLVF-FEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLV-----LLDL 331
           L L  N  +  I    +     L +  L   +       +I + +   GL         L
Sbjct: 209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268

Query: 332 SHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLN 391
           ++     +  +K   L ++ A+ L+   +  +    +      Q + +    L       
Sbjct: 269 TYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQ---FP 323

Query: 392 IVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLA--GLKSLEIV 449
            +    L +L +  N  S  I  +  AL SL  LD+S N +S     + +  G  SL  +
Sbjct: 324 TLDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL 381

Query: 450 DFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSF-QAIQMMDFSTNKFMGFI 508
           D S N     ++        L++     + L        F   + +  +D S        
Sbjct: 382 DLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF 440

Query: 509 PDAVG-------MDLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDGQVPG-LYRLRSLR 559
                       + ++ N         +F     L +L+LS   L+    G    L  L+
Sbjct: 441 DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ 500

Query: 560 ALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPW 598
            L++SHN+L      + + L  L+ L+ S+N        
Sbjct: 501 LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI 539

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  175 bits (446), Expect = 3e-47
 Identities = 83/464 (17%), Positives = 142/464 (30%), Gaps = 42/464 (9%)

Query: 177 NFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTG-NVHDFY--QSLLVLNLG 233
           +   + + +D SFN        S      L+ LDL +  +       ++    L  L L 
Sbjct: 29  DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88

Query: 234 SNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNY-EISPR 292
            N      P   +   SL  L      +       I  L  L  LN++HN ++  ++   
Sbjct: 89  GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY 148

Query: 293 LVFFEKLLLLDLSFNDLSGPLPSKIAQTTE-KAGLVLLDLSHNRFSGEIPLKITELKSLQ 351
                 L+ +DLS+N +     + +    E     + LD+S N     I  +  +   L 
Sbjct: 149 FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLH 207

Query: 352 ALFLSNNLLIGEIPAR-IGNLTYLQVIDLSHNMLSGSIPLNIVGC--------FQLLALI 402
            L L  N     I    + NL  L V  L          L I             +    
Sbjct: 208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR 267

Query: 403 VNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLND 462
           +   N   +   +   L ++  + ++   I       +      + +      L      
Sbjct: 268 LTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLK---QF 322

Query: 463 AITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGM-------- 514
                  LK  ++  NK S +      +  ++  +D S N        +           
Sbjct: 323 PTLDLPFLKSLTLTMNKGSISFKKV--ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRH 380

Query: 515 -DLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG--LYRLRSLRALDLSHNSLTGQ 571
            DLS N     +      L+ L++L+   + L           L  L  LD+S+ +    
Sbjct: 381 LDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID 439

Query: 572 IPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNL 615
             G    L  L  L ++ NSF                FA   NL
Sbjct: 440 FDGIFLGLTSLNTLKMAGNSFKDNTL--------SNVFANTTNL 475

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  160 bits (408), Expect = 3e-42
 Identities = 80/384 (20%), Positives = 137/384 (35%), Gaps = 20/384 (5%)

Query: 85  VSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRI-STCFGGLSGLKTLDLSYNKFV 143
           +S++++   +   +  +  +   L  L L  N  +  I  TC   L+GL    L   +F 
Sbjct: 184 LSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK 242

Query: 144 GVV------PDAIMKLRNLRELILKGNP-ELGGVFPGWVGNFSMNLEKLDFSFNSFCGEI 196
                    P  +  L ++     +                 + N+  +  +  S   + 
Sbjct: 243 DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLA-NVSAMSLAGVSI--KY 299

Query: 197 PESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKL 256
            E +      + L + +  L          L  L L  N+ S +    A    SL+ L L
Sbjct: 300 LEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALP--SLSYLDL 357

Query: 257 DNN--SVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLP 314
             N  S  G          +L HL+LS N     +S   +  E+L  LD   + L     
Sbjct: 358 SRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTE 416

Query: 315 SKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARI-GNLTY 373
                + EK  L+ LD+S+     +       L SL  L ++ N       + +  N T 
Sbjct: 417 FSAFLSLEK--LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN 474

Query: 374 LQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQIS 433
           L  +DLS   L            +L  L +++NNL        + L SL  LD S N+I 
Sbjct: 475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534

Query: 434 GEIPLTLAGLKSLEIVDFSSNNLS 457
               +     KSL   + ++N+++
Sbjct: 535 TSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  127 bits (322), Expect = 5e-31
 Identities = 52/297 (17%), Positives = 94/297 (31%), Gaps = 26/297 (8%)

Query: 329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSI 388
                 + S ++P  I    S + + LS N L         N + LQ +DLS   +    
Sbjct: 16  YQCMDQKLS-KVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72

Query: 389 PLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEI 448
                G   L  LI+  N +          L SL+ L     +++      +  L +L+ 
Sbjct: 73  DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132

Query: 449 VDFSSNNLSG-SLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMM----DFSTNK 503
           ++ + N +    L    +  TNL +  ++ N +     N L   +    +    D S N 
Sbjct: 133 LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP 192

Query: 504 FMGFIPDA------VGMDLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDGQVP------ 550
                  A        + L  N     I K   Q L GL    L       +        
Sbjct: 193 IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEP 252

Query: 551 ----GLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQ 603
               GL  +       L++ +           L  ++ ++L+  S        + ++
Sbjct: 253 SIMEGLCDVTIDE-FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFK 308

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  170 bits (432), Expect = 1e-45
 Identities = 100/516 (19%), Positives = 178/516 (34%), Gaps = 44/516 (8%)

Query: 108 LEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPEL 167
            + L LS N      S  F     L+ LDLS  +   +   A   L +L  LIL GNP +
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-I 88

Query: 168 GGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLT----GNVHDF 223
             +  G     S +L+KL     +        + +LK+LK L++  N +           
Sbjct: 89  QSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 224 YQSLLVLNLGSNRFS----GTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLN 279
             +L  L+L SN+        L       +    L L  N +    P     ++ L  L 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLT 206

Query: 280 LSHNHLNYEISPRLVF-FEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNR--- 335
           L +N  +  +    +     L +  L   +       +    +   GL  L +   R   
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266

Query: 336 ---FSGEIPLKITELKSLQALFLSNNLLIGEIPARIG--NLTYLQVIDLSHNMLSGSIPL 390
              +  +I      L ++ +  L +   I  +          +L++++            
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSV-TIERVKDFSYNFGWQHLELVNCKFGQFPTLKLK 325

Query: 391 NIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQIS--GEIPLTLAGLKSLEI 448
           +      L  L   +N            L SL+ LD+S N +S  G    +  G  SL+ 
Sbjct: 326 S------LKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377

Query: 449 VDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLF-SFQAIQMMDFSTNKFMGF 507
           +D S N +  +++        L++     + L       +F S + +  +D S       
Sbjct: 378 LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436

Query: 508 IPDAVG-------MDLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDGQVPG--LYRLRS 557
                        + ++ N         +F  L+ L +L+LS   L+ Q+       L S
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSS 495

Query: 558 LRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFS 593
           L+ L+++ N L     G    L  L  + L  N + 
Sbjct: 496 LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  138 bits (349), Expect = 1e-34
 Identities = 91/462 (19%), Positives = 160/462 (34%), Gaps = 62/462 (13%)

Query: 177 NFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNR 236
           N   + + LD SFN        S +    L+ LDL +  +               +    
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-------------TIEDGA 71

Query: 237 FSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFF 296
           +   L         L+ L L  N +        + L +L  L     +L    +  +   
Sbjct: 72  YQS-LS-------HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123

Query: 297 EKLLLLDLSFNDL-SGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFL 355
           + L  L+++ N + S  LP   +  T    L  LDLS N+        +  L  +  L L
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTN---LEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180

Query: 356 SNNL---LIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVG---CFQLLALIVNNNNLS 409
           S +L    +  I         L  + L +N  S ++    +      ++  L++      
Sbjct: 181 SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240

Query: 410 GEIQ-PELDALDSLKILDISNNQISG------EIPLTLAGLKSLEIVDFSSNNLSGSLND 462
           G ++  +  AL+ L  L I   +++       +I      L ++      S  +    + 
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF 300

Query: 463 AITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGM------DL 516
           +       ++  +   K        L S + +    F++NK  G     V +      DL
Sbjct: 301 S--YNFGWQHLELVNCKFGQFPTLKLKSLKRL---TFTSNKG-GNAFSEVDLPSLEFLDL 354

Query: 517 SDNLLH--GTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPG 574
           S N L   G   +  F    L+YL+LSFN +         L  L  LD  H++L      
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF 414

Query: 575 NI-SSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNL 615
           ++  SL+ L  L++S+               F G F G  +L
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVA---------FNGIFNGLSSL 447

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  103 bits (258), Expect = 3e-23
 Identities = 56/275 (20%), Positives = 95/275 (34%), Gaps = 26/275 (9%)

Query: 330 DLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIP 389
                 F  +IP  +    S + L LS N L         +   LQV+DLS   +     
Sbjct: 13  QCMELNFY-KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 390 LNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIV 449
                   L  LI+  N +          L SL+ L      ++      +  LK+L+ +
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 450 DFSSNNL-SGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFI 508
           + + N + S  L +  +  TNL++  ++ NK+       L     + +++ S        
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS-------- 181

Query: 509 PDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG--LYRLRSLRALDL--- 563
                +DLS N ++  I  G F+   L  L L  NF    V    +  L  L    L   
Sbjct: 182 -----LDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235

Query: 564 ---SHNSLTGQIPGNISSLQELTLLNLSYNSFSGF 595
              +  +L       +  L  LT+          +
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  102 bits (255), Expect = 8e-23
 Identities = 55/315 (17%), Positives = 104/315 (33%), Gaps = 31/315 (9%)

Query: 303 DLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIG 362
                +    +P  +  +T+      LDLS N               LQ L LS   +  
Sbjct: 13  QCMELNFYK-IPDNLPFSTKN-----LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66

Query: 363 EIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSL 422
                  +L++L  + L+ N +         G   L  L+    NL+      +  L +L
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 423 KILDISNNQI-SGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLS 481
           K L++++N I S ++P   + L +LE +D SSN +       +     +   +++ + LS
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD-LS 185

Query: 482 GN----LPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHG-------------T 524
            N    +    F    +  +    N     +       L+   +H               
Sbjct: 186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245

Query: 525 IPKGLFQ-LQGLEYLNLSFNFLDGQVPGLYR----LRSLRALDLSHNSLTGQIPG-NISS 578
             K   + L  L        +LD  +  +      L ++ +  L   ++           
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG 305

Query: 579 LQELTLLNLSYNSFS 593
            Q L L+N  +  F 
Sbjct: 306 WQHLELVNCKFGQFP 320

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 87.8 bits (218), Expect = 2e-18
 Identities = 53/205 (25%), Positives = 75/205 (36%), Gaps = 8/205 (3%)

Query: 88  NLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFT--GRISTCFGGLSGLKTLDLSYNKFVGV 145
            LT TS  G        L  LEFL LS N  +  G  S    G + LK LDLS+N  +  
Sbjct: 329 RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-T 387

Query: 146 VPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKS 205
           +    + L  L  L  + +  L  +    V     NL  LD S              L S
Sbjct: 388 MSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 206 LKHLDLEKNNLTGNVHDFY----QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSV 261
           L+ L +  N+   N         ++L  L+L   +     P    S  SL VL + +N +
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506

Query: 262 VGGIPTCIASLQALTHLNLSHNHLN 286
                     L +L  + L  N  +
Sbjct: 507 KSVPDGIFDRLTSLQKIWLHTNPWD 531

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  173 bits (441), Expect = 1e-45
 Identities = 120/621 (19%), Positives = 219/621 (35%), Gaps = 63/621 (10%)

Query: 102 LCKLSFLEFLVLSSNAFTGRI-STCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELI 160
              L  L+ L L S      I    F  L  L+ LDL  +K   + PDA   L +L EL 
Sbjct: 44  FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103

Query: 161 LKGNP-ELGGVFPGWVGNFSMNLEKLDFSFNSF-CGEIPESLYYLKSLKHLDLEKNNLTG 218
           L         +  G+  N    L +LD S N      +  S   L SLK +D   N +  
Sbjct: 104 LYFCGLSDAVLKDGYFRNLK-ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162

Query: 219 -NVHDF----YQSLLVLNLGSNRFSGTLPCFAASA------MSLTVLKLDNNSVVGGIPT 267
              H+      ++L   +L +N     +             M L +L +  N        
Sbjct: 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT----- 217

Query: 268 CIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLV 327
                  +       N ++   +  L+    ++     F+++             ++ + 
Sbjct: 218 -------VDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD-PDQNTFAGLARSSVR 269

Query: 328 LLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARI-GNLTYLQVIDLSHNMLSG 386
            LDLSH             LK L+ L L+ N  I +I       L  LQV++LS+N+L  
Sbjct: 270 HLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK-INKIADEAFYGLDNLQVLNLSYNLLGE 328

Query: 387 SIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQIS--------GEIPL 438
               N  G  ++  + +  N+++         L+ L+ LD+ +N ++         +I L
Sbjct: 329 LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFL 388

Query: 439 TLAGLKSLEIVDFSSNNLSGSLNDA--------ITKWTNLKYFSIARNKLSGNLPNWLFS 490
           +   L +L  ++ ++N +  S N          + +  +L+   + +N+ S    +   S
Sbjct: 389 SGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS 448

Query: 491 -FQAIQMMDFSTNKFMGFIPDAVG------------MDLSDNLLHGTIPKGLFQ-LQGLE 536
              +++ +    N         +             + L+ N L+ ++P G+F  L  L 
Sbjct: 449 ENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTALR 507

Query: 537 YLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFV 596
            L+L+ N L   +       +L  LD+S N L    P    SL  L + +  +       
Sbjct: 508 GLSLNSNRL-TVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECELS 566

Query: 597 PWKQGYQKFPGAFAGNPNLCLESSHGECNRTSLPLVPGKTLREEMTEGPISIWAFCL-SF 655
            +           AG P           +  SL  +  +   EE     +    F + + 
Sbjct: 567 TFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTV 626

Query: 656 FVSFYLGVVALFCSARTRRYI 676
            ++ +L  +      R   +I
Sbjct: 627 TLTLFLMTILTVTKFRGFCFI 647

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  173 bits (439), Expect = 2e-45
 Identities = 111/534 (20%), Positives = 183/534 (34%), Gaps = 74/534 (13%)

Query: 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVV-PDAIMKLRNLRELILKG 163
           L+  E L+LS N      ++ F  L  L+ L+L        +  +A   L NLR L L  
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 164 NPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEI--PESLYYLKSLKHLDLEKNNLTG-NV 220
           +  +  + P        +L +L   F      +        LK+L  LDL KN +    +
Sbjct: 83  SK-IYFLHPDAFQGLF-HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL 140

Query: 221 HDFYQ---SLLVLNLGSNRFSGTLPC-FAA-SAMSLTVLKLDNNSVVGGIPTCIASLQ-- 273
           H  +    SL  ++  SN+               +L+   L  NS+   +          
Sbjct: 141 HPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP 200

Query: 274 ----ALTHLNLSHNHLNYEIS------------PRLVFFEKLLLLDLSFNDLSGPLPSKI 317
                L  L++S N    +I+              L+    ++     F+++        
Sbjct: 201 FRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD-PDQNT 259

Query: 318 AQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARI-GNLTYLQV 376
                ++ +  LDLSH             LK L+ L L+ N  I +I       L  LQV
Sbjct: 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK-INKIADEAFYGLDNLQV 318

Query: 377 IDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEI 436
           ++LS+N+L                  + ++N  G        L  +  +D+  N I+   
Sbjct: 319 LNLSYNLLGE----------------LYSSNFYG--------LPKVAYIDLQKNHIAIIQ 354

Query: 437 PLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQM 496
             T   L+ L+ +D   N L+      I    ++    ++ NKL   LP    +   I +
Sbjct: 355 DQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLV-TLPKINLTANLIHL 408

Query: 497 M-----DFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDGQVP 550
                 +     F+  +P    + L+ N                LE L L  N L     
Sbjct: 409 SENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE 468

Query: 551 G------LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPW 598
                     L  L+ L L+HN L    PG  S L  L  L+L+ N  +     
Sbjct: 469 TELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHN 522

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  148 bits (375), Expect = 3e-37
 Identities = 115/544 (21%), Positives = 189/544 (34%), Gaps = 56/544 (10%)

Query: 86  SINLTDTSLSGQVHPR--LCKLSFLEFLVLSSNAFTG-RISTCFGGLSGLKTLDLSYNKF 142
            + L    LS  V        L  L  L LS N      +   FG L+ LK++D S N+ 
Sbjct: 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160

Query: 143 VGVVPDAIMKLR--NLRELILKGNPELGGVFPGWVGNFS----MNLEKLDFSFNSFCGEI 196
             V    +  L+   L    L  N     V   W    +    M LE LD S N +  +I
Sbjct: 161 FLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDI 220

Query: 197 P------------ESLYYLKSLKHLDLEKNNLTGNVHDFYQ-----SLLVLNLGSNRFSG 239
                         SL     +       +N+     + +      S+  L+L       
Sbjct: 221 TGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS 280

Query: 240 TLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKL 299
                  +   L VL L  N +          L  L  LNLS+N L    S       K+
Sbjct: 281 LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV 340

Query: 300 LLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNL 359
             +DL  N ++  +  +  +  EK  L  LDL  N  +      I  + S+  +FLS N 
Sbjct: 341 AYIDLQKNHIAI-IQDQTFKFLEK--LQTLDLRDNALT-----TIHFIPSIPDIFLSGNK 392

Query: 360 LIGEIPARIGNLTYLQVIDLSHNMLSG-SIPLNIVGCFQLLALIVNNNNLSGEIQPELDA 418
           L+  +P        +    LS N L    I   ++    L  LI+N N  S     +  +
Sbjct: 393 LV-TLPKINLTANLI---HLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS 448

Query: 419 -LDSLKILDISNNQISGEI-----PLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKY 472
              SL+ L +  N +              GL  L+++  + N L+       +  T L+ 
Sbjct: 449 ENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRG 508

Query: 473 FSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVG----MDLSDNLLHGTIPKG 528
            S+  N+L+  L +       ++++D S N+ +   PD       +D++ N         
Sbjct: 509 LSLNSNRLT-VLSHNDL-PANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECELS 566

Query: 529 LFQLQGLEYLNLSFNFLDGQV----PGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTL 584
            F +  L + N++       +    P  +   SL +L          +     SL  +  
Sbjct: 567 TF-INWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCT 625

Query: 585 LNLS 588
           + L+
Sbjct: 626 VTLT 629

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  146 bits (370), Expect = 1e-36
 Identities = 90/467 (19%), Positives = 166/467 (35%), Gaps = 61/467 (13%)

Query: 188 SFNSFCG--EIPESLYYLKSLKHLDLEKNNLTG-NVHDF--YQSLLVLNLGSNRFSGTLP 242
           +F  FC   ++P+ L    + + L L  N +       F   + L +L LGS     T+ 
Sbjct: 9   AFYRFCNLTQVPQVL---NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID 65

Query: 243 CFAASAM-SLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVF--FEKL 299
             A   + +L +L L ++ +    P     L  L  L L    L+  +     F   + L
Sbjct: 66  KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL 125

Query: 300 LLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIP--LKITELKSLQALFLSN 357
             LDLS N +                L  +D S N+        L+  + K+L    L+ 
Sbjct: 126 TRLDLSKNQIRSLYLHPSFGKLNS--LKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183

Query: 358 NLLIGEIPARIGNL------TYLQVIDLSHNM------------LSGSIPLNIVGCFQLL 399
           N L   +    G          L+++D+S N             +S S   +++    ++
Sbjct: 184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243

Query: 400 ALIVNNNNLSGEIQPEL---DALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNL 456
                 +N+  +         A  S++ LD+S+  +          LK L++++ + N +
Sbjct: 244 GAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI 302

Query: 457 SGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGM-- 514
           +   ++A     NL+  +++ N L     +  +    +  +D   N              
Sbjct: 303 NKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE 362

Query: 515 -----DLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLT 569
                DL DN L       +  +  +  + LS N L   +P +    +   + LS N L 
Sbjct: 363 KLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKL-VTLPKIN--LTANLIHLSENRLE 414

Query: 570 G-QIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNL 615
              I   +  +  L +L L+ N FS                + NP+L
Sbjct: 415 NLDILYFLLRVPHLQILILNQNRFSSCSG--------DQTPSENPSL 453

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.7 bits (98), Expect = 7e-04
 Identities = 20/80 (25%), Positives = 27/80 (33%), Gaps = 11/80 (13%)

Query: 536 EYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGF 595
                 F  L  QVP +  L +   L LS N +      +   L++L LL L        
Sbjct: 7   RIAFYRFCNLT-QVPQV--LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63

Query: 596 VPWKQGYQKFPGAFAGNPNL 615
           +           AF   PNL
Sbjct: 64  ID--------KEAFRNLPNL 75

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  158 bits (402), Expect = 1e-41
 Identities = 92/524 (17%), Positives = 173/524 (33%), Gaps = 62/524 (11%)

Query: 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
            + ++ L LS N  T          + L+ L L  ++   +  DA   L +L  L L  N
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84

Query: 165 PELGGVFPGWVGNFSMNLEKLDFSFNSF-CGEIPESLYYLKSLKHLDLEKNNLTGNVHDF 223
             L  +   W G  S +L+ L+   N +    +      L +L+ L +        +   
Sbjct: 85  H-LSSLSSSWFGPLS-SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI 142

Query: 224 YQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHN 283
             + L                     SL  L++   S+       + S++ + HL L  +
Sbjct: 143 DFAGLT--------------------SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182

Query: 284 HLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLK 343
              + +         +  L+L   +L+    S +      + +  L    +  +      
Sbjct: 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT---DES 239

Query: 344 ITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIV 403
             EL  L    L  + +         + T   + D + +       L  V    +  L +
Sbjct: 240 FNELLKLLRYILELSEV------EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHI 293

Query: 404 NNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSL--- 460
               L  ++      L+ +K + + N+++          LKSLE +D S N +       
Sbjct: 294 PQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKN 353

Query: 461 NDAITKWTNLKYFSIARNKLSGNLPNWLFSFQ---AIQMMDFSTNKFMGFIPDAVGM--- 514
           +     W +L+   +++N L  ++            +  +D S N F             
Sbjct: 354 SACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKM 412

Query: 515 ---DLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQ 571
              +LS   +   +   + Q   LE L++S N LD        L  L+ L +S N L   
Sbjct: 413 RFLNLSSTGIR-VVKTCIPQ--TLEVLDVSNNNLD-SFSL--FLPRLQELYISRNKLK-T 465

Query: 572 IPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNL 615
           +P   S    L ++ +S N                G F    +L
Sbjct: 466 LPDA-SLFPVLLVMKISRNQLKSVP---------DGIFDRLTSL 499

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  154 bits (390), Expect = 4e-40
 Identities = 90/496 (18%), Positives = 165/496 (33%), Gaps = 65/496 (13%)

Query: 104 KLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGV-VPDAIMKLRNLRELILK 162
            L  LE L LS N  +   S+ FG LS LK L+L  N +  + V      L NL+ L + 
Sbjct: 72  SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 131

Query: 163 GNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHD 222
                  +        + +L +L+    S      +SL  ++ + HL L  +     +  
Sbjct: 132 NVETFSEIRRIDFAGLT-SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEI 190

Query: 223 FYQ---SLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLN 279
           F     S+  L L     +             + +K                L  L    
Sbjct: 191 FADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI 250

Query: 280 LSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGE 339
           L  + + ++          L   + S +D+   L        E   +  L +       +
Sbjct: 251 LELSEVEFDDCT----LNGLGDFNPSESDVVSELGK-----VETVTIRRLHIPQFYLFYD 301

Query: 340 IPLKITELKSLQALFLSNNLLIGEIPARIG-NLTYLQVIDLSHNMLSGSIPLNIVGCFQL 398
           +    + L+ ++ + + N+  +  +P     +L  L+ +DLS N++     L    C   
Sbjct: 302 LSTVYSLLEKVKRITVENS-KVFLVPCSFSQHLKSLEFLDLSENLMV-EEYLKNSACK-- 357

Query: 399 LALIVNNNNLSGEIQPELDALDSLKILDISNNQIS--GEIPLTLAGLKSLEIVDFSSNNL 456
                              A  SL+ L +S N +    +    L  LK+L  +D S N  
Sbjct: 358 ------------------GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF 399

Query: 457 SGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDL 516
              + D+      +++ +++   +   +       Q ++++D S N              
Sbjct: 400 H-PMPDSCQWPEKMRFLNLSSTGIR-VVKT--CIPQTLEVLDVSNNNLD----------- 444

Query: 517 SDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNI 576
                  +    L +LQ    L +S N L   +P       L  + +S N L     G  
Sbjct: 445 -------SFSLFLPRLQ---ELYISRNKLK-TLPDASLFPVLLVMKISRNQLKSVPDGIF 493

Query: 577 SSLQELTLLNLSYNSF 592
             L  L  + L  N +
Sbjct: 494 DRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  134 bits (338), Expect = 2e-33
 Identities = 73/427 (17%), Positives = 144/427 (33%), Gaps = 36/427 (8%)

Query: 177 NFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLT---GNVHDFYQSLLVLNLG 233
             +  ++ LD SFN         L    +L+ L L+ + +    G+      SL  L+L 
Sbjct: 23  GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS 82

Query: 234 SNRFSGTLPCFA-ASAMSLTVLKLDNNS-VVGGIPTCIASLQALTHLNLSHNHLNYEISP 291
            N  S +L         SL  L L  N     G+ +   +L  L  L + +     EI  
Sbjct: 83  DNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR 141

Query: 292 R-LVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSL 350
                   L  L++    L       +    +   +  L L  +  +  + +    L S+
Sbjct: 142 IDFAGLTSLNELEIKALSLRNYQSQSLKSIRD---IHHLTLHLSESAFLLEIFADILSSV 198

Query: 351 QALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSG 410
           + L L +  L     + +        +       S     +     +LL  I+  + +  
Sbjct: 199 RYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE- 257

Query: 411 EIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNL 470
                 D      + D + ++      L      ++  +      L   L+   +    +
Sbjct: 258 -----FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312

Query: 471 KYFSIARNKLSGNLPNWLFS-FQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGL 529
           K  ++  +K+   +P       ++++ +D S N             + +  L  +  KG 
Sbjct: 313 KRITVENSKVF-LVPCSFSQHLKSLEFLDLSENL------------MVEEYLKNSACKG- 358

Query: 530 FQLQGLEYLNLSFN---FLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLN 586
                L+ L LS N    +      L  L++L +LD+S N+    +P +    +++  LN
Sbjct: 359 -AWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLN 416

Query: 587 LSYNSFS 593
           LS     
Sbjct: 417 LSSTGIR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  129 bits (325), Expect = 1e-31
 Identities = 74/393 (18%), Positives = 138/393 (35%), Gaps = 37/393 (9%)

Query: 102 LCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELIL 161
              L+ L  L + + +     S     +  +  L L  ++   ++      L ++R L L
Sbjct: 144 FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL 203

Query: 162 KGNPELGGVFPGW--VGNFSMNLEKLDFSFNSF----CGEIPESLYYLKSLKHLDLEKNN 215
           +    L         V   S  ++KL F  +        E+ + L Y+  L  ++ +   
Sbjct: 204 RDTN-LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262

Query: 216 LTGNVHDFYQ--------------SLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSV 261
           L G                     ++  L++        L    +    +  + ++N+ V
Sbjct: 263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV 322

Query: 262 VGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFE---KLLLLDLSFNDLSGPLPSKIA 318
                +    L++L  L+LS N +  E             L  L LS N L   +     
Sbjct: 323 FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS-MQKTGE 381

Query: 319 QTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVID 378
                  L  LD+S N F   +P      + ++ L LS+  +   +         L+V+D
Sbjct: 382 ILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGI-RVVKT--CIPQTLEVLD 437

Query: 379 LSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPL 438
           +S+N L  S  L +    +L  L ++ N L     P+      L ++ IS NQ+      
Sbjct: 438 VSNNNLD-SFSLFLP---RLQELYISRNKLK--TLPDASLFPVLLVMKISRNQLKSVPDG 491

Query: 439 TLAGLKSLEIVDFSSNNLSGSLNDA--ITKWTN 469
               L SL+ +   +N    S      +++W N
Sbjct: 492 IFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 524

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  121 bits (305), Expect = 4e-29
 Identities = 74/444 (16%), Positives = 145/444 (32%), Gaps = 54/444 (12%)

Query: 185 LDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTG---NVHDFYQSLLVLNLGSNRFSGTL 241
            D    SF   IP  L    ++K LDL  N +T           +L VL L S+R + T+
Sbjct: 10  CDGRSRSF-TSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TI 65

Query: 242 PCFAASAM-SLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVF--FEK 298
              A  ++ SL  L L +N +     +    L +L +LNL  N     +    +F     
Sbjct: 66  EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ-TLGVTSLFPNLTN 124

Query: 299 LLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNN 358
           L  L +   +    +            L  L++            +  ++ +  L L  +
Sbjct: 125 LQTLRIGNVETFSEIRRIDFAGLTS--LNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182

Query: 359 LLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDA 418
                +      L+ ++ ++L    L+     + +   ++ + +         +      
Sbjct: 183 ESAFLLEIFADILSSVRYLELRDTNLA-RFQFSPLPVDEVSSPMKKLAFRGSVLTD---- 237

Query: 419 LDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARN 478
            +S   L      I     +         + DF+ +           +   ++   I + 
Sbjct: 238 -ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQF 296

Query: 479 KLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQ-LQGLEY 537
            L  +L       + ++ +    +K                     +P    Q L+ LE+
Sbjct: 297 YLFYDLSTVYSLLEKVKRITVENSKV------------------FLVPCSFSQHLKSLEF 338

Query: 538 LNLSFNFLDGQVPG----LYRLRSLRALDLSHNSLT--GQIPGNISSLQELTLLNLSYNS 591
           L+LS N +  +            SL+ L LS N L    +    + +L+ LT L++S N+
Sbjct: 339 LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT 398

Query: 592 FSGFVPWKQGYQKFPGAFAGNPNL 615
           F             P +      +
Sbjct: 399 F----------HPMPDSCQWPEKM 412

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 81.3 bits (201), Expect = 3e-16
 Identities = 40/225 (17%), Positives = 77/225 (34%), Gaps = 23/225 (10%)

Query: 374 LQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPE-LDALDSLKILDISNNQI 432
             V D      + SIP  +     + +L ++ N ++  I    L A  +L++L + +++I
Sbjct: 7   SGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRI 62

Query: 433 SGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQ 492
           +         L SLE +D S N+LS   +      ++LKY ++  N              
Sbjct: 63  NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ----------- 111

Query: 493 AIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDGQVPG 551
                          + +   + + +      I +  F  L  L  L +    L      
Sbjct: 112 -----TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166

Query: 552 -LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGF 595
            L  +R +  L L  +     +      L  +  L L   + + F
Sbjct: 167 SLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF 211

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 69.8 bits (171), Expect = 1e-12
 Identities = 31/191 (16%), Positives = 72/191 (37%), Gaps = 15/191 (7%)

Query: 418 ALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIAR 477
           + D+  + D  +   +  IP  L    +++ +D S N ++   +  +    NL+   +  
Sbjct: 3   SCDASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKS 59

Query: 478 NKLSGNLPNWLFSF-QAIQMMDFSTNKFMGFIPDAVG-------MDLSDNLLHGTIPKGL 529
           ++++  +    F    +++ +D S N          G       ++L  N         L
Sbjct: 60  SRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 118

Query: 530 FQ-LQGLEYLNLSFNFLDGQVPG--LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLN 586
           F  L  L+ L +       ++       L SL  L++   SL      ++ S++++  L 
Sbjct: 119 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178

Query: 587 LSYNSFSGFVP 597
           L  +  +  + 
Sbjct: 179 LHLSESAFLLE 189

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  151 bits (384), Expect = 9e-40
 Identities = 97/466 (20%), Positives = 174/466 (37%), Gaps = 57/466 (12%)

Query: 128 GLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDF 187
            L+      L        V      L  +  L       +  +    V   + NL +++F
Sbjct: 22  ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRL-GIKSIDG--VEYLN-NLTQINF 75

Query: 188 SFNSFCGEIPESLYYLKSLKHLDLEKNNLTG--NVHDFYQSLLVLNLGSNRFSGTLPCFA 245
           S N      P  L  L  L  + +  N +     + +   +L  L L +N+ +  +    
Sbjct: 76  SNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANL-TNLTGLTLFNNQITD-IDPLK 131

Query: 246 ASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLS 305
               +L  L+L +N++     + ++ L +L  L+  +     ++ P L     L  LD+S
Sbjct: 132 NLT-NLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVT--DLKP-LANLTTLERLDIS 185

Query: 306 FNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIP 365
            N +S    S +A+ T    L  L  ++N+ S   PL    L +L  L L+ N L  +I 
Sbjct: 186 SNKVSDI--SVLAKLTN---LESLIATNNQISDITPLG--ILTNLDELSLNGNQLK-DIG 237

Query: 366 ARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKIL 425
             + +LT L  +DL++N +S   PL+  G  +L  L +  N +S      L  L +L  L
Sbjct: 238 T-LASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNI--SPLAGLTALTNL 292

Query: 426 DISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLP 485
           +++ NQ+    P+  + LK+L  +    NN+S      ++  T L+      NK+S    
Sbjct: 293 ELNENQLEDISPI--SNLKNLTYLTLYFNNISDI--SPVSSLTKLQRLFFYNNKVSD--V 346

Query: 486 NWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFL 545
           + L +   I  +    N+     P                   L  L  +  L L+    
Sbjct: 347 SSLANLTNINWLSAGHNQISDLTP-------------------LANLTRITQLGLNDQAW 387

Query: 546 DGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNS 591
                      S+     +        P  IS     T  ++++N 
Sbjct: 388 TNAPVNYKANVSIPNTVKNVTGAL-IAPATISDGGSYTEPDITWNL 432

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  143 bits (364), Expect = 4e-37
 Identities = 98/499 (19%), Positives = 174/499 (34%), Gaps = 64/499 (12%)

Query: 83  HVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKF 142
             +   L  T+++  V      L  +  L                 L+ L  ++ S N+ 
Sbjct: 25  EKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQINFSNNQL 80

Query: 143 VGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYY 202
             + P  +  L  L ++++  N ++  + P  + N + NL  L    N       + L  
Sbjct: 81  TDITP--LKNLTKLVDILMNNN-QIADITP--LANLT-NLTGLTLFNNQI--TDIDPLKN 132

Query: 203 LKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVV 262
           L +L  L+L  N ++           +  L                 SL  L   N  V 
Sbjct: 133 LTNLNRLELSSNTISD----------ISALSGLT-------------SLQQLSFGNQ-VT 168

Query: 263 GGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTE 322
              P  +A+L  L  L++S N ++ +IS  L     L  L  + N +S   P  +   T 
Sbjct: 169 DLKP--LANLTTLERLDISSNKVS-DISV-LAKLTNLESLIATNNQISDITP--LGILTN 222

Query: 323 KAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHN 382
              L  L L+ N+      L    L +L  L L+NN +    P  +  LT L  + L  N
Sbjct: 223 ---LDELSLNGNQLKDIGTLA--SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN 275

Query: 383 MLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAG 442
            +S   PL   G   L  L +N N L       +  L +L  L +  N IS   P  ++ 
Sbjct: 276 QISNISPLA--GLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP--VSS 329

Query: 443 LKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTN 502
           L  L+ + F +N +S     ++   TN+ + S   N++S   P  L +   I  +  +  
Sbjct: 330 LTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 385

Query: 503 KFMGFIPDAVGMDLSDNLLHG-----TIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRS 557
            +     +        N +         P  +         ++++N         Y    
Sbjct: 386 AWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQ 445

Query: 558 LRALDLSHNSLTGQIPGNI 576
              +     + +G +   +
Sbjct: 446 PVTIGKGTTTFSGTVTQPL 464

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  130 bits (328), Expect = 2e-32
 Identities = 88/351 (25%), Positives = 141/351 (40%), Gaps = 46/351 (13%)

Query: 250 SLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDL 309
                 L   +V   +      L  +T L      +   I   + +   L  ++ S N L
Sbjct: 25  EKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQL 80

Query: 310 SGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIG 369
           +   P  +   T+   LV + +++N+ +   PL    L +L  L L NN +    P  + 
Sbjct: 81  TDITP--LKNLTK---LVDILMNNNQIADITPLA--NLTNLTGLTLFNNQITDIDP--LK 131

Query: 370 NLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISN 429
           NLT L  ++LS N +S    L+  G   L  L   N     +    L  L +L+ LDIS+
Sbjct: 132 NLTNLNRLELSSNTISDISALS--GLTSLQQLSFGNQVTDLK---PLANLTTLERLDISS 186

Query: 430 NQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLF 489
           N++S    L  A L +LE +  ++N +S      +   TNL   S+  N+L  ++   L 
Sbjct: 187 NKVSDISVL--AKLTNLESLIATNNQISDI--TPLGILTNLDELSLNGNQLK-DIGT-LA 240

Query: 490 SFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQV 549
           S   +  +D + N+     P                   L  L  L  L L  N +   +
Sbjct: 241 SLTNLTDLDLANNQISNLAP-------------------LSGLTKLTELKLGANQISN-I 280

Query: 550 PGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQ 600
             L  L +L  L+L+ N L    P  IS+L+ LT L L +N+ S   P   
Sbjct: 281 SPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSS 329

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  146 bits (372), Expect = 4e-39
 Identities = 91/358 (25%), Positives = 152/358 (42%), Gaps = 31/358 (8%)

Query: 102 LCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELIL 161
              L+     VL   + T  ++     L  +  L ++  K   +    I  L NL  L L
Sbjct: 18  DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVASI--QGIEYLTNLEYLNL 73

Query: 162 KGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTG--N 219
            GN ++  + P  + N    L  L    N        +L  L +L+ L L ++N++    
Sbjct: 74  NGN-QITDISP--LSNLV-KLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISP 127

Query: 220 VHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLN 279
           + +    +  LNLG+N     L    ++   L  L +  + V    P  IA+L  L  L+
Sbjct: 128 LANL-TKMYSLNLGANHNLSDLSPL-SNMTGLNYLTVTESKVKDVTP--IANLTDLYSLS 183

Query: 280 LSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGE 339
           L++N +  +ISP L     L       N ++   P  +A  T    L  L + +N+ +  
Sbjct: 184 LNYNQIE-DISP-LASLTSLHYFTAYVNQITDITP--VANMTR---LNSLKIGNNKITDL 236

Query: 340 IPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLL 399
            PL    L  L  L +  N  I +I A + +LT L+++++  N +S    LN     QL 
Sbjct: 237 SPLA--NLSQLTWLEIGTN-QISDINA-VKDLTKLKMLNVGSNQISDISVLN--NLSQLN 290

Query: 400 ALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLS 457
           +L +NNN L  E    +  L +L  L +S N I+   P  LA L  ++  DF++  + 
Sbjct: 291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  144 bits (367), Expect = 2e-38
 Identities = 68/352 (19%), Positives = 135/352 (38%), Gaps = 30/352 (8%)

Query: 251 LTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLS 310
              L      +    P   A L       L    +   ++      E +  L ++   ++
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 311 GPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGN 370
                 I   T    L  L+L+ N+ +   PL    L  L  L++  N +     + + N
Sbjct: 58  SI--QGIEYLTN---LEYLNLNGNQITDISPLS--NLVKLTNLYIGTNKI--TDISALQN 108

Query: 371 LTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNN 430
           LT L+ + L+ + +S   PL      ++ +L +  N+   ++   L  +  L  L ++ +
Sbjct: 109 LTNLRELYLNEDNISDISPLA--NLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTES 165

Query: 431 QISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFS 490
           ++    P+  A L  L  +  + N +       +   T+L YF+   N+++ ++   + +
Sbjct: 166 KVKDVTPI--ANLTDLYSLSLNYNQIEDI--SPLASLTSLHYFTAYVNQIT-DITP-VAN 219

Query: 491 FQAIQMMDFSTNKFMGFIPDA-----VGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFL 545
              +  +    NK     P A       +++  N +  +    +  L  L+ LN+  N +
Sbjct: 220 MTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQI 277

Query: 546 DGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVP 597
              +  L  L  L +L L++N L  +    I  L  LT L LS N  +   P
Sbjct: 278 SD-ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  141 bits (359), Expect = 2e-37
 Identities = 81/394 (20%), Positives = 151/394 (38%), Gaps = 55/394 (13%)

Query: 182 LEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVH-DFYQSLLVLNLGSNRFSGT 240
              L         +I      L       L+K ++T  V  +  +S+  L +   + + +
Sbjct: 2   AATLATLPAPI-NQI-FPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVA-S 58

Query: 241 LPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLL 300
           +        +L  L L+ N +    P  +++L  LT+L +  N +  +IS  L     L 
Sbjct: 59  IQGI-EYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DISA-LQNLTNLR 113

Query: 301 LLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLL 360
            L L+ +++S    S +A  T+   +  L+L  N    ++   ++ +  L  L ++ + +
Sbjct: 114 ELYLNEDNISD--ISPLANLTK---MYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKV 167

Query: 361 IGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALD 420
               P  I NLT L  + L++N +    PL       L       N ++      +  + 
Sbjct: 168 KDVTP--IANLTDLYSLSLNYNQIEDISPLA--SLTSLHYFTAYVNQITDI--TPVANMT 221

Query: 421 SLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKL 480
            L  L I NN+I+   P  LA L  L  ++  +N +S    +A+   T LK  ++  N++
Sbjct: 222 RLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQI 277

Query: 481 S-----GNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGL 535
           S      NL   L S                         L++N L     + +  L  L
Sbjct: 278 SDISVLNNLSQ-LNSL-----------------------FLNNNQLGNEDMEVIGGLTNL 313

Query: 536 EYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLT 569
             L LS N +   +  L  L  + + D ++  + 
Sbjct: 314 TTLFLSQNHITD-IRPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  141 bits (357), Expect = 4e-37
 Identities = 77/389 (19%), Positives = 145/389 (37%), Gaps = 48/389 (12%)

Query: 203 LKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVV 262
             +L  L    N +  +        +   L     +  +        S+T L +    V 
Sbjct: 2   AATLATLPAPINQIFPDAD--LAEGIRAVLQKASVTDVVTQ--EELESITKLVVAGEKVA 57

Query: 263 GGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTE 322
                 I  L  L +LNL+ N +  +ISP L    KL  L +  N ++    S +   T 
Sbjct: 58  S--IQGIEYLTNLEYLNLNGNQIT-DISP-LSNLVKLTNLYIGTNKITDI--SALQNLTN 111

Query: 323 KAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHN 382
              L  L L+ +  S   PL    L  + +L L  N  + ++   + N+T L  + ++ +
Sbjct: 112 ---LRELYLNEDNISDISPLA--NLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTES 165

Query: 383 MLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAG 442
            +    P+       L +L +N N +       L +L SL       NQI+   P+  A 
Sbjct: 166 KVKDVTPIA--NLTDLYSLSLNYNQIEDI--SPLASLTSLHYFTAYVNQITDITPV--AN 219

Query: 443 LKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTN 502
           +  L  +   +N ++      +   + L +  I  N++S ++   +     ++M++  +N
Sbjct: 220 MTRLNSLKIGNNKITDL--SPLANLSQLTWLEIGTNQIS-DINA-VKDLTKLKMLNVGSN 275

Query: 503 KFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRAL 561
           +                    +    L  L  L  L L+ N L  +    +  L +L  L
Sbjct: 276 QI-------------------SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL 316

Query: 562 DLSHNSLTGQIPGNISSLQELTLLNLSYN 590
            LS N +T   P  ++SL ++   + +  
Sbjct: 317 FLSQNHITDIRP--LASLSKMDSADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  123 bits (310), Expect = 7e-31
 Identities = 74/312 (23%), Positives = 127/312 (40%), Gaps = 27/312 (8%)

Query: 100 PRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLREL 159
             +  L+ LE+L L+ N  T         L  L  L +  NK       A+  L NLREL
Sbjct: 60  QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD--ISALQNLTNLREL 115

Query: 160 ILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTG- 218
            L  +  +  + P  + N +  +  L+   N         L  +  L +L + ++ +   
Sbjct: 116 YLNED-NISDISP--LANLT-KMYSLNLGANHN-LSDLSPLSNMTGLNYLTVTESKVKDV 170

Query: 219 -NVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTH 277
             + +    L  L+L  N+    +   A S  SL       N +    P  +A++  L  
Sbjct: 171 TPIANL-TDLYSLSLNYNQIED-ISPLA-SLTSLHYFTAYVNQITDITP--VANMTRLNS 225

Query: 278 LNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFS 337
           L + +N +  ++SP L    +L  L++  N +S    + +   T+   L +L++  N+ S
Sbjct: 226 LKIGNNKIT-DLSP-LANLSQLTWLEIGTNQISDI--NAVKDLTK---LKMLNVGSNQIS 278

Query: 338 GEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQ 397
               L    L  L +LFL+NN L  E    IG LT L  + LS N ++   PL      +
Sbjct: 279 DISVLN--NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLA--SLSK 334

Query: 398 LLALIVNNNNLS 409
           + +    N  + 
Sbjct: 335 MDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  107 bits (270), Expect = 1e-25
 Identities = 47/276 (17%), Positives = 91/276 (32%), Gaps = 35/276 (12%)

Query: 325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNML 384
           G   L       +   P    +L       L    +   +      L  +  + ++   +
Sbjct: 1   GAATLATLPAPINQIFPDA--DLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV 56

Query: 385 SGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLK 444
           + SI   I     L  L +N N ++      L  L  L  L I  N+I+      L  L 
Sbjct: 57  A-SIQ-GIEYLTNLEYLNLNGNQITDI--SPLSNLVKLTNLYIGTNKIT--DISALQNLT 110

Query: 445 SLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKF 504
           +L  +  + +N+S      +   T +   ++  N    +L   L +   +  +  + +K 
Sbjct: 111 NLRELYLNEDNISDI--SPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKV 167

Query: 505 MGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLS 564
               P                   +  L  L  L+L++N ++  +  L  L SL      
Sbjct: 168 KDVTP-------------------IANLTDLYSLSLNYNQIED-ISPLASLTSLHYFTAY 207

Query: 565 HNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQ 600
            N +T   P  ++++  L  L +  N  +   P   
Sbjct: 208 VNQITDITP--VANMTRLNSLKIGNNKITDLSPLAN 241

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  145 bits (367), Expect = 2e-37
 Identities = 74/493 (15%), Positives = 143/493 (29%), Gaps = 32/493 (6%)

Query: 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
            +  +   ++ ++    +++       +K LDLS N    +    +     L  L L  N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 165 PELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFY 224
             L       + + S  L  LD + N       + L    S++ L    NN++       
Sbjct: 69  -VLYETLD--LESLS-TLRTLDLNNNYV-----QELLVGPSIETLHAANNNISRVSCSRG 119

Query: 225 QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVG-GIPTCIASLQALTHLNLSHN 283
           Q    + L +N+ +            +  L L  N +         AS   L HLNL +N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 284 HLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLK 343
            +        V F KL  LDLS N L+  +  +        G+  + L +N+    I   
Sbjct: 180 FI--YDVKGQVVFAKLKTLDLSSNKLAF-MGPEFQSAA---GVTWISLRNNKLV-LIEKA 232

Query: 344 ITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIV 403
           +   ++L+   L  N        R       +V  ++   +      N   C        
Sbjct: 233 LRFSQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291

Query: 404 NNNNLSGEIQPELDALDSL-----KILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSG 458
                     P  D L +L      +L    ++    +            +D        
Sbjct: 292 GAYCCEDLPAPFADRLIALKRKEHALLSGQGSETE-RLECERENQARQREIDALKEQYRT 350

Query: 459 SLNDAITKWTNLKYFSIARNKLSGNLPN---WLFSFQAIQMMDFSTNKFMGFIPDAVGMD 515
            ++    +          +  L   + N                   +      +   + 
Sbjct: 351 VIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQ 410

Query: 516 LSDNLL----HGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLR-ALDLSHNSLTG 570
           L   ++       + +   Q   +   ++  +          RL+ L    DL+  S   
Sbjct: 411 LLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANA 470

Query: 571 QIPGNISSLQELT 583
            +   +   Q L 
Sbjct: 471 TLQELVVREQNLA 483

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  142 bits (360), Expect = 1e-36
 Identities = 56/474 (11%), Positives = 127/474 (26%), Gaps = 84/474 (17%)

Query: 122 ISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMN 181
           I       +  K   ++ +     +        N++EL L GN                 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN----------------P 45

Query: 182 LEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQ--SLLVLNLGSNRFSG 239
           L ++              L     L+ L+L  N L     D     +L  L+L +N    
Sbjct: 46  LSQIS----------AADLAPFTKLELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYV-- 92

Query: 240 TLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKL 299
                                        +    ++  L+ ++N+++  +S      +  
Sbjct: 93  ---------------------------QELLVGPSIETLHAANNNIS-RVSCSR--GQGK 122

Query: 300 LLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSG-EIPLKITELKSLQALFLSNN 358
             + L+ N ++          +    +  LDL  N               +L+ L L  N
Sbjct: 123 KNIYLANNKITMLRDLDEGCRSR---VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 359 LLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDA 418
            +  ++  ++     L+ +DLS N L+  +         +  + + NN L   I+  L  
Sbjct: 180 FIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRF 235

Query: 419 LDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARN 478
             +L+  D+  N       L     K+  +   +   +         + T          
Sbjct: 236 SQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY 294

Query: 479 KLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYL 538
                   +     A++  + +                  +     +            +
Sbjct: 295 CCEDLPAPFADRLIALKRKEHALL------------SGQGSET-ERLECERENQARQREI 341

Query: 539 NLSFNFLDGQVPGLYR-LRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNS 591
           +         +  +    ++   L+    +L  Q+     +  EL         
Sbjct: 342 DALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVG 395

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  117 bits (295), Expect = 4e-28
 Identities = 60/360 (16%), Positives = 120/360 (33%), Gaps = 41/360 (11%)

Query: 264 GIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEK 323
            I     +        ++ + L   ++        +  LDLS N LS    + +A  T+ 
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK- 59

Query: 324 AGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLL------------------IGEIP 365
             L LL+LS N     +   +  L +L+ L L+NN +                  I  + 
Sbjct: 60  --LELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVS 115

Query: 366 ARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDA-LDSLKI 424
                    + I L++N ++    L+     ++  L +  N +      EL A  D+L+ 
Sbjct: 116 C--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 425 LDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNL 484
           L++  N I  ++         L+ +D SSN L+  +         + + S+  NKL   +
Sbjct: 174 LNLQYNFIY-DVK-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LI 229

Query: 485 PNWLFSFQAIQMMDFSTNKFMGFIPDAVG------MDLSDNLLHGTIPKGLFQLQGLEYL 538
              L   Q ++  D   N F                 ++   +     +   +       
Sbjct: 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

Query: 539 NLSFNFL-DGQVPGLYRLRSLRALDLSHNSLTG----QIPGNISSLQELTLLNLSYNSFS 593
           +       D   P   RL +L+  + +  S  G    ++     +      ++     + 
Sbjct: 290 HYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYR 349

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  102 bits (256), Expect = 3e-23
 Identities = 51/256 (19%), Positives = 94/256 (36%), Gaps = 30/256 (11%)

Query: 368 IGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDI 427
             N    ++  ++ + L  ++       + +  L ++ N LS     +L     L++L++
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 428 SNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNW 487
           S+N +  E    L  L +L  +D ++N +       +    +++    A N +S  +   
Sbjct: 66  SSNVLY-ETL-DLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVS-- 115

Query: 488 LFSFQAIQMMDFSTNKFMGFIPDAVG-------MDLSDNLLHGTIPKGLF-QLQGLEYLN 539
               Q  + +  + NK         G       +DL  N +       L      LE+LN
Sbjct: 116 CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 540 LSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWK 599
           L +NF+   V G      L+ LDLS N L   +     S   +T ++L  N         
Sbjct: 176 LQYNFIY-DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV------ 227

Query: 600 QGYQKFPGAFAGNPNL 615
                   A   + NL
Sbjct: 228 ----LIEKALRFSQNL 239

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  138 bits (349), Expect = 3e-35
 Identities = 96/509 (18%), Positives = 174/509 (34%), Gaps = 71/509 (13%)

Query: 98  VHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLR 157
           ++PR    +FL+  +  S+  T  +      +        +++++    P    + R + 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 158 ELILKGNPELG-----------GVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSL 206
              L+   +                P    +    LE L  S NS   E+PE    LKSL
Sbjct: 62  VSRLRDCLDRQAHELELNNLGLSSLPELPPH----LESLVASCNSL-TELPELPQSLKSL 116

Query: 207 KHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIP 266
              +     L+         L  L + +N+    LP    S+  L ++ +DNNS    + 
Sbjct: 117 LVDNNNLKALSDLPP----LLEYLGVSNNQLE-KLPELQNSS-FLKIIDVDNNS----LK 166

Query: 267 TCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGL 326
                  +L  +   +N L  E  P L     L  +    N L   LP           L
Sbjct: 167 KLPDLPPSLEFIAAGNNQL--EELPELQNLPFLTAIYADNNSLKK-LPDLPLS------L 217

Query: 327 VLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSG 386
             +   +N    E+P ++  L  L  ++  NNLL   +P    +L  L   ++  N L+ 
Sbjct: 218 ESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPDLPPSLEAL---NVRDNYLT- 270

Query: 387 SIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSL 446
            +P        L       + LS           +L  L+ S+N+I   +      L+ L
Sbjct: 271 DLPELPQSLTFLDVSENIFSGLSELP-------PNLYYLNASSNEIR-SLCDLPPSLEEL 322

Query: 447 EIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMG 506
              + S+N L   L         L+    + N L+  +P    +   ++ +    N    
Sbjct: 323 ---NVSNNKLI-ELPALPP---RLERLIASFNHLA-EVPELPQN---LKQLHVEYNPLR- 370

Query: 507 FIPDAVGM--DLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLS 564
             PD      DL  N     +P+     Q L+ L++  N L  + P +    S+  L ++
Sbjct: 371 EFPDIPESVEDLRMNSHLAEVPE---LPQNLKQLHVETNPLR-EFPDI--PESVEDLRMN 424

Query: 565 HNSLTGQIPGNISSLQELTLLNLSYNSFS 593
              +         +  +L      ++   
Sbjct: 425 SERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  137 bits (346), Expect = 8e-35
 Identities = 84/415 (20%), Positives = 155/415 (37%), Gaps = 54/415 (13%)

Query: 181 NLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGT 240
            L++     ++   E+P     +KS        +                  G  R    
Sbjct: 12  FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWE--------RNAPPGNGEQREMAV 62

Query: 241 LPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLL 300
                        L+L+N  +   +P     L+    L  S N L  E+       + LL
Sbjct: 63  SRLRDCLDRQAHELELNNLGLS-SLPELPPHLE---SLVASCNSLT-ELPELPQSLKSLL 117

Query: 301 LLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLL 360
           + + +   LS   P           L  L +S+N+   ++P ++     L+ + + NN L
Sbjct: 118 VDNNNLKALSDLPPL----------LEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSL 165

Query: 361 IGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALD 420
             ++P    +L ++      +N L   +P  +     L A+  +NN+L        D   
Sbjct: 166 K-KLPDLPPSLEFI---AAGNNQLE-ELP-ELQNLPFLTAIYADNNSLKKLP----DLPL 215

Query: 421 SLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKL 480
           SL+ +   NN +  E+P  L  L  L  +   +N L  +L D      +L+  ++  N L
Sbjct: 216 SLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPDLP---PSLEALNVRDNYL 269

Query: 481 SGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNL 540
           + +LP    S   + + +   +      P+   ++ S N +  ++         LE LN+
Sbjct: 270 T-DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIR-SLCD---LPPSLEELNV 324

Query: 541 SFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGF 595
           S N L  ++P L     L  L  S N L  ++P    +L++   L++ YN    F
Sbjct: 325 SNNKLI-ELPAL--PPRLERLIASFNHLA-EVPELPQNLKQ---LHVEYNPLREF 372

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  116 bits (292), Expect = 9e-28
 Identities = 75/352 (21%), Positives = 126/352 (35%), Gaps = 62/352 (17%)

Query: 246 ASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLS 305
            S   L      ++++   +P    ++++ T    + +       P           +++
Sbjct: 8   VSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPP-----GNGEQREMA 61

Query: 306 FNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIP 365
            + L   L  +            L+L++   S  +P        L++L  S N L  E+P
Sbjct: 62  VSRLRDCLDRQ---------AHELELNNLGLS-SLP---ELPPHLESLVASCNSLT-ELP 107

Query: 366 ARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKIL 425
               +L  L V + +   LS   P        L  L V+NN L  ++ PEL     LKI+
Sbjct: 108 ELPQSLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQLE-KL-PELQNSSFLKII 158

Query: 426 DISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLP 485
           D+ NN +  ++P       SLE +   +N L   L + +     L       N L   LP
Sbjct: 159 DVDNNSLK-KLP---DLPPSLEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLK-KLP 211

Query: 486 NWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFL 545
           +   S ++I                       +N+L       L  L  L  +    N L
Sbjct: 212 DLPLSLESI--------------------VAGNNIL--EELPELQNLPFLTTIYADNNLL 249

Query: 546 DGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVP 597
              +P L    SL AL++  N LT  +P    SL  L +    ++  S   P
Sbjct: 250 -KTLPDL--PPSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPP 297

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 57.7 bits (140), Expect = 6e-09
 Identities = 40/185 (21%), Positives = 69/185 (37%), Gaps = 34/185 (18%)

Query: 108 LEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN--- 164
           L +L  SSN     I +       L+ L++S NK +  +P        L  LI   N   
Sbjct: 299 LYYLNASSN----EIRSLCDLPPSLEELNVSNNKLI-ELPALP---PRLERLIASFNHLA 350

Query: 165 --PELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHD 222
             PEL             NL++L   +N    E P+    ++ L+      N+    V +
Sbjct: 351 EVPELPQ-----------NLKQLHVEYNPL-REFPDIPESVEDLRM-----NSHLAEVPE 393

Query: 223 FYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSH 282
             Q+L  L++ +N      P       S+  L++++  VV        +   L      H
Sbjct: 394 LPQNLKQLHVETNPLR-EFP---DIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEH 449

Query: 283 NHLNY 287
           +H ++
Sbjct: 450 HHHHH 454

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  136 bits (344), Expect = 4e-35
 Identities = 70/337 (20%), Positives = 132/337 (39%), Gaps = 36/337 (10%)

Query: 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
           L+  + +   ++      +        ++ L+L+  +   +   A      +++L +  N
Sbjct: 44  LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 103

Query: 165 PELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLT---GNVH 221
             +  + P    N    L  L    N          +    L  L +  NNL     +  
Sbjct: 104 -AIRYLPPHVFQNVP-LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF 161

Query: 222 DFYQSLLVLNLGSNRFS----GTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTH 277
               SL  L L SNR +      +P       SL    +  N +     + +A   A+  
Sbjct: 162 QATTSLQNLQLSSNRLTHVDLSLIP-------SLFHANVSYNLL-----STLAIPIAVEE 209

Query: 278 LNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFS 337
           L+ SHN +N  +   +    +L +L L  N+L     +  A      GLV +DLS+N   
Sbjct: 210 LDASHNSIN-VVRGPV--NVELTILKLQHNNL-----TDTAWLLNYPGLVEVDLSYNELE 261

Query: 338 GEIPLKI-TELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCF 396
            +I      +++ L+ L++SNN  +  +      +  L+V+DLSHN L   +  N     
Sbjct: 262 -KIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD 318

Query: 397 QLLALIVNNNNLSGEIQPELDALDSLKILDISNNQIS 433
           +L  L +++N++   ++       +LK L +S+N   
Sbjct: 319 RLENLYLDHNSIV-TLKL--STHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  129 bits (325), Expect = 2e-32
 Identities = 81/397 (20%), Positives = 143/397 (36%), Gaps = 57/397 (14%)

Query: 99  HPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRE 158
               C    +   + + + + G        L+  K +    +    +    +   R +  
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFG---FEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 73

Query: 159 LILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLT- 217
           L L                    +E++D            +  Y  +++ L +  N +  
Sbjct: 74  LNLNDL----------------QIEEID----------TYAFAYAHTIQKLYMGFNAIRY 107

Query: 218 --GNVHDFYQSLLVLNLGSNRFSGTLPCFA-ASAMSLTVLKLDNNSVVGGIPTCIASLQA 274
              +V      L VL L  N  S +LP     +   LT L + NN++         +  +
Sbjct: 108 LPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 166

Query: 275 LTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHN 334
           L +L LS N L   +   L     L   ++S+N LS  L   IA       +  LD SHN
Sbjct: 167 LQNLQLSSNRLT-HVDLSL--IPSLFHANVSYNLLST-LAIPIA-------VEELDASHN 215

Query: 335 RFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNI-V 393
             +  +   +     L  L L +N L  +    + N   L  +DLS+N L   I  +  V
Sbjct: 216 SIN-VVRGPV--NVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELE-KIMYHPFV 269

Query: 394 GCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSS 453
              +L  L ++NN L   +      + +LK+LD+S+N +   +         LE +    
Sbjct: 270 KMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDH 327

Query: 454 NNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFS 490
           N++  +L  +      LK  +++ N    N    LF 
Sbjct: 328 NSIV-TLKLST--HHTLKNLTLSHNDWDCNSLRALFR 361

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  126 bits (318), Expect = 1e-31
 Identities = 79/400 (19%), Positives = 145/400 (36%), Gaps = 70/400 (17%)

Query: 177 NFSMNLEKLDFSFNSFCGEIPESL--YYLKSLKHLDLEKNNLT---GNVHDFYQSLLVLN 231
           N   +    D   +    ++        L + K +  + + +      + D ++ + +LN
Sbjct: 16  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLN 75

Query: 232 LGSNRFSGTLPCFA-ASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEIS 290
           L   +    +  +A A A ++  L +  N++    P    ++  LT L L  N L+  + 
Sbjct: 76  LNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLP 133

Query: 291 PRL-VFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKS 349
             +     KL  L +S N+L   +     Q T    L  L LS NR +  + L +  + S
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTS--LQNLQLSSNRLT-HVDLSL--IPS 187

Query: 350 LQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLS 409
           L    +S NLL     + +     ++ +D SHN ++  +   +    +L  L + +NNL+
Sbjct: 188 LFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLT 239

Query: 410 GEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTN 469
                 L     L  +D+S N++   +      ++ LE +  S+N L  +LN        
Sbjct: 240 DT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPT 296

Query: 470 LKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGL 529
           LK   ++ N L                                            + +  
Sbjct: 297 LKVLDLSHNHLL------------------------------------------HVERNQ 314

Query: 530 FQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLT 569
            Q   LE L L  N +   +  L    +L+ L LSHN   
Sbjct: 315 PQFDRLENLYLDHNSI-VTLK-LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  105 bits (264), Expect = 1e-24
 Identities = 63/355 (17%), Positives = 119/355 (33%), Gaps = 74/355 (20%)

Query: 265 IPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKA 324
           I + +        +++     +       +      ++    + +   LP+ +  +  + 
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK-LPAALLDSFRQ- 70

Query: 325 GLVLLDLSHNRFSGEIPLKI-TELKSLQALFLSNNLLIGEIPARI-GNLTYLQVIDLSHN 382
            + LL+L+  +   EI         ++Q L++  N  I  +P  +  N+  L V+ L  N
Sbjct: 71  -VELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERN 127

Query: 383 MLSGSIPLNI-VGCFQLLALIVNNNNLSGEIQPE-LDALDSLKILDISNNQISGEIPLTL 440
            LS S+P  I     +L  L ++NNNL   I+ +   A  SL+ L +S+N+++    + L
Sbjct: 128 DLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH---VDL 182

Query: 441 AGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFS 500
           + + SL   + S N LS      +     ++    + N ++                   
Sbjct: 183 SLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN------------------- 218

Query: 501 TNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRA 560
                                   +   +     L  L L  N L      L     L  
Sbjct: 219 -----------------------VVRGPVNV--ELTILKLQHNNLT-DTAWLLNYPGLVE 252

Query: 561 LDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNL 615
           +DLS+N L   +      +Q L  L +S N                      P L
Sbjct: 253 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLV----------ALNLYGQPIPTL 297

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 78.5 bits (194), Expect = 1e-15
 Identities = 37/216 (17%), Positives = 76/216 (35%), Gaps = 18/216 (8%)

Query: 387 SIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSL 446
            I  N+        + ++          E   L++ KI+   N+ +       L   + +
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 447 EIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFS-FQAIQMMDFSTNKFM 505
           E+++ +   +      A      ++   +  N +   LP  +F     + ++    N   
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS 130

Query: 506 GFIPDA-------VGMDLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDGQVPGLYRLRS 557
                          + +S+N L   I    FQ    L+ L LS N L      L  + S
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSL--IPS 187

Query: 558 LRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFS 593
           L   ++S+N L+      ++    +  L+ S+NS +
Sbjct: 188 LFHANVSYNLLS-----TLAIPIAVEELDASHNSIN 218

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 65.8 bits (161), Expect = 1e-11
 Identities = 32/157 (20%), Positives = 56/157 (35%), Gaps = 12/157 (7%)

Query: 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
              L  L L  N  T   +       GL  +DLSYN+   ++    +K++ L  L +  N
Sbjct: 225 NVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 282

Query: 165 P--ELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHD 222
               L              L+ LD S N     +  +      L++L L+ N++      
Sbjct: 283 RLVALNLYGQPIP-----TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLS 336

Query: 223 FYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNN 259
            + +L  L L  N +        A   ++    +D+ 
Sbjct: 337 THHTLKNLTLSHNDWDCN--SLRALFRNVARPAVDDA 371

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  137 bits (346), Expect = 3e-34
 Identities = 88/475 (18%), Positives = 169/475 (35%), Gaps = 47/475 (9%)

Query: 87  INLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVV 146
           +++   +           L+  + +   ++      +        ++ L+L+  +   + 
Sbjct: 32  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEID 91

Query: 147 PDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSL 206
             A      +++L +  N  +  + P    N    L  L    N          +    L
Sbjct: 92  TYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVP-LLTVLVLERNDLSSLPRGIFHNTPKL 149

Query: 207 KHLDLEKNNLT---GNVHDFYQSLLVLNLGSNRFS----GTLPCFAASAMSLTVLKLDNN 259
             L +  NNL     +      SL  L L SNR +      +P       SL    +  N
Sbjct: 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIP-------SLFHANVSYN 202

Query: 260 SVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQ 319
            +     + +A   A+  L+ SHN +N  +   +    +L +L L  N+L     +  A 
Sbjct: 203 LL-----STLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNL-----TDTAW 249

Query: 320 TTEKAGLVLLDLSHNRFSGEIPLKI-TELKSLQALFLSNNLLIGEIPARIGNLTYLQVID 378
                GLV +DLS+N    +I      +++ L+ L++SNN  +  +      +  L+V+D
Sbjct: 250 LLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLD 307

Query: 379 LSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISG-EIP 437
           LSHN L   +  N     +L  L +++N++   ++       +LK L +S+N      + 
Sbjct: 308 LSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKL--STHHTLKNLTLSHNDWDCNSLR 363

Query: 438 LTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMM 497
                +    + D   +       +            + R      L + +   Q  Q  
Sbjct: 364 ALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGR 423

Query: 498 DFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGL 552
             +T+           ++   +L H    +G   LQG E L    N L  +V  L
Sbjct: 424 CSATDT----------INSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQL 468

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  120 bits (303), Expect = 9e-29
 Identities = 78/406 (19%), Positives = 140/406 (34%), Gaps = 68/406 (16%)

Query: 193 CGEIPESLYYLKSLK--HLDLEKNNLTGNVHDFY-QSLLVLNLGSNRFSGTLPCFAASAM 249
              I  +L Y       H+D++  ++     D    +  ++   ++           S  
Sbjct: 16  YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFR 75

Query: 250 SLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRL-VFFEKLLLLDLSFND 308
            + +L L++  +        A    +  L +  N +   + P +      L +L L  ND
Sbjct: 76  QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERND 134

Query: 309 LSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI-TELKSLQALFLSNNLLIGEIPAR 367
           LS  LP  I   T K  L  L +S+N     I         SLQ L LS+N  +  +   
Sbjct: 135 LSS-LPRGIFHNTPK--LTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNR-LTHVD-- 187

Query: 368 IGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDI 427
           +  +  L   ++S+N+LS      +     +  L  ++N+++  ++        L IL +
Sbjct: 188 LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKL 239

Query: 428 SNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNW 487
            +N ++ +    L     L  VD S N L   +     K   L+   I+ N+L       
Sbjct: 240 QHNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV------ 291

Query: 488 LFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDG 547
                                                +      +  L+ L+LS N L  
Sbjct: 292 ------------------------------------ALNLYGQPIPTLKVLDLSHNHLLH 315

Query: 548 QVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFS 593
                 +   L  L L HNS+   +   +S+   L  L LS+N + 
Sbjct: 316 VERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 68.4 bits (167), Expect = 4e-12
 Identities = 52/335 (15%), Positives = 102/335 (30%), Gaps = 15/335 (4%)

Query: 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
              L  L L  N  T   +       GL  +DLSYN+   ++    +K++ L  L +  N
Sbjct: 231 NVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 288

Query: 165 P--ELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHD 222
               L              L+ LD S N     +  +      L++L L+ N++      
Sbjct: 289 RLVALNLYGQPIP-----TLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNSIVTLKLS 342

Query: 223 FYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSH 282
            + +L  L L  N +        A   ++    +D+      I   +         +  +
Sbjct: 343 THHTLKNLTLSHNDWDCN--SLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPY 400

Query: 283 NHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPL 342
                +        EK+       +        +           +    + +   E+  
Sbjct: 401 LDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNE 460

Query: 343 KITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALI 402
              E++ L    +    L+  + A I   T L+   L  + L+ S          L    
Sbjct: 461 LRAEVQQLTNEQIQQEQLLQGLHAEI--DTNLRRYRLPKDGLARSSDNLNKVFTHLKERQ 518

Query: 403 VNNNNLSGEIQPELDA-LDSLKILDISNNQISGEI 436
                 +   + E DA     + L+  N  +  ++
Sbjct: 519 AFKLRETQARRTEADAKQKETEDLEQENIALEKQL 553

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  130 bits (328), Expect = 2e-33
 Identities = 58/330 (17%), Positives = 111/330 (33%), Gaps = 23/330 (6%)

Query: 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
            +  +   ++ ++    +++       +K LDLS N    +    +     L  L L  N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 165 PELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFY 224
             L       + + S  L  LD + N       + L    S++ L    NN++       
Sbjct: 69  -VLYETLD--LESLS-TLRTLDLNNNYV-----QELLVGPSIETLHAANNNISRVSCSRG 119

Query: 225 QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVG-GIPTCIASLQALTHLNLSHN 283
           Q    + L +N+ +            +  L L  N +         AS   L HLNL +N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 284 HLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLK 343
            +  ++    V F KL  LDLS N L+  +  +        G+  + L +N+    I   
Sbjct: 180 FIY-DVKG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAA---GVTWISLRNNKLV-LIEKA 232

Query: 344 ITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIV 403
           +   ++L+   L  N        R       +V  ++   +      N   C        
Sbjct: 233 LRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291

Query: 404 NNNNLSGEIQPELDALDSLKILDISNNQIS 433
                      +L A  + +++ + ++   
Sbjct: 292 GAYCCE-----DLPAPFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  120 bits (302), Expect = 4e-30
 Identities = 57/333 (17%), Positives = 110/333 (33%), Gaps = 20/333 (6%)

Query: 122 ISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMN 181
           I       +  K   ++ +     +        N++EL L GN  L  +    +  F+  
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFT-K 59

Query: 182 LEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTL 241
           LE L+ S N    E  + L  L +L+ LDL  N +   +     S+  L+  +N  S  +
Sbjct: 60  LELLNLSSNVL-YETLD-LESLSTLRTLDLNNNYVQ-ELLVG-PSIETLHAANNNIS-RV 114

Query: 242 PCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVF--FEKL 299
               +       + L NN +             + +L+L  N ++  ++   +    + L
Sbjct: 115 S--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAASSDTL 171

Query: 300 LLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNL 359
             L+L +N +   +  ++        L  LDLS N+ +  +  +      +  + L NN 
Sbjct: 172 EHLNLQYNFIYD-VKGQVVFAK----LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK 225

Query: 360 LIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDAL 419
           L+  I   +     L+  DL  N        +     Q +  +          Q E +  
Sbjct: 226 LV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE-C 283

Query: 420 DSLKILDISNNQISGEIPLTLAGLKSLEIVDFS 452
               +                  L +L      
Sbjct: 284 TVPTLGHYGAYCCEDLPAPFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  117 bits (295), Expect = 4e-29
 Identities = 46/268 (17%), Positives = 98/268 (36%), Gaps = 29/268 (10%)

Query: 326 LVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLS 385
             +  ++ +     +        +++ L LS N L     A +   T L++++LS N+L 
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71

Query: 386 GSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKS 445
                ++     L  L +NNN +      EL    S++ L  +NN IS  +  +    + 
Sbjct: 72  -ETL-DLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCSR--GQG 121

Query: 446 LEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFM 505
            + +  ++N ++   +      + ++Y  +  N++                   +  +  
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID----------------TVNFAELA 165

Query: 506 GFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSH 565
                   ++L  N ++  +   +     L+ L+LS N L    P       +  + L +
Sbjct: 166 ASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRN 223

Query: 566 NSLTGQIPGNISSLQELTLLNLSYNSFS 593
           N L   I   +   Q L   +L  N F 
Sbjct: 224 NKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  116 bits (292), Expect = 1e-28
 Identities = 51/359 (14%), Positives = 110/359 (30%), Gaps = 59/359 (16%)

Query: 264 GIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEK 323
            I     +        ++ + L   ++        +  LDLS N LS    + +A  T+ 
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK- 59

Query: 324 AGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNM 383
             L LL+LS N    E    +  L +L+ L L+NN +       +     ++ +  ++N 
Sbjct: 60  --LELLNLSSNVLY-ETL-DLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNN 110

Query: 384 LSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGL 443
           +S  +  +                               K + ++NN+I+    L     
Sbjct: 111 IS-RVSCSR--------------------------GQGKKNIYLANNKITMLRDLDEGCR 143

Query: 444 KSLEIVDFSSNNLSG-SLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTN 502
             ++ +D   N +   +  +       L++ ++  N +  ++   +              
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-------------- 188

Query: 503 KFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALD 562
                      +DLS N L   +        G+ +++L  N L      L   ++L   D
Sbjct: 189 ----VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFD 243

Query: 563 LSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNLCLESSH 621
           L  N             +   +  ++  +        +     P         C +   
Sbjct: 244 LRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPA 301

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 36/181 (19%), Positives = 56/181 (30%), Gaps = 32/181 (17%)

Query: 104 KLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKG 163
               LE L L  N             + LKTLDLS NK    +         +  + L+ 
Sbjct: 167 SSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRN 223

Query: 164 NPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLT-GNVHD 222
           N                 L             I ++L + ++L+H DL  N    G + D
Sbjct: 224 N----------------KLV-----------LIEKALRFSQNLEHFDLRGNGFHCGTLRD 256

Query: 223 FYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIAS-LQALTHLNLS 281
           F+     +   + +    L        ++  L          +P   A  L AL H +  
Sbjct: 257 FFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHH 316

Query: 282 H 282
           H
Sbjct: 317 H 317

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  129 bits (326), Expect = 4e-32
 Identities = 74/360 (20%), Positives = 138/360 (38%), Gaps = 66/360 (18%)

Query: 106 SFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNP 165
           +    L L  N         F     L+ L+L+ N    V P A   L NLR L L+ N 
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN- 90

Query: 166 ELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDF-- 223
                           L+ +                 L +L  LD+ +N +   + D+  
Sbjct: 91  ---------------RLKLIP----------LGVFTGLSNLTKLDISENKIV-ILLDYMF 124

Query: 224 --YQSLLVLNLGSNRFSGTLPCFAASAM-SLTVLKLDNNSVVGGIPTCIASLQALTHLNL 280
               +L  L +G N     +   A S + SL  L L+  ++       ++ L  L  L L
Sbjct: 125 QDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL 183

Query: 281 SHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEI 340
            H ++N              + D SF  L                L +L++SH  +   +
Sbjct: 184 RHLNINA-------------IRDYSFKRLY--------------RLKVLEISHWPYLDTM 216

Query: 341 PLKITELKSLQALFLSNNLLIGEIPAR-IGNLTYLQVIDLSHNMLSGSIPLNI-VGCFQL 398
                   +L +L +++   +  +P   + +L YL+ ++LS+N +S +I  ++     +L
Sbjct: 217 TPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRL 274

Query: 399 LALIVNNNNLSGEIQPE-LDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLS 457
             + +    L+  ++P     L+ L++L++S NQ++         + +LE +   SN L+
Sbjct: 275 QEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  123 bits (311), Expect = 4e-30
 Identities = 73/326 (22%), Positives = 117/326 (35%), Gaps = 33/326 (10%)

Query: 275 LTHLNLSHNHLNYEISPR-LVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSH 333
              L+L  N +   ++      F  L  L+L+ N +S  +            L  L L  
Sbjct: 34  TRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSA-VEPGAFNNLFN--LRTLGLRS 89

Query: 334 NRFSGEIPLKI-TELKSLQALFLSNNLLIGEIPARI-GNLTYLQVIDLSHNMLSGSIPLN 391
           NR    IPL + T L +L  L +S N  I  +   +  +L  L+ +++  N L   I   
Sbjct: 90  NRLK-LIPLGVFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDNDLV-YISHR 146

Query: 392 I-VGCFQLLALIVNNNNLSGEIQPE-LDALDSLKILDISNNQISGEIPLTLAGLKSLEIV 449
              G   L  L +   NL+  I  E L  L  L +L + +  I+     +   L  L+++
Sbjct: 147 AFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVL 205

Query: 450 DFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIP 509
           + S      ++        NL   SI    L+  +P                      + 
Sbjct: 206 EISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVR----------------HLV 248

Query: 510 DAVGMDLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNS 567
               ++LS N +  TI   +   L  L+ + L    L    P     L  LR L++S N 
Sbjct: 249 YLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307

Query: 568 LTGQIPGNISSLQELTLLNLSYNSFS 593
           LT        S+  L  L L  N  +
Sbjct: 308 LTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  113 bits (285), Expect = 6e-27
 Identities = 57/299 (19%), Positives = 108/299 (36%), Gaps = 28/299 (9%)

Query: 329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARI-GNLTYLQVIDLSHNMLSGS 387
           +     RF   +P  I      + L L  N  I  +      +  +L+ ++L+ N++S +
Sbjct: 16  VLCHRKRFV-AVPEGI--PTETRLLDLGKNR-IKTLNQDEFASFPHLEELELNENIVS-A 70

Query: 388 IPLNI-VGCFQLLALIVNNNNLSGEIQPE-LDALDSLKILDISNNQISGEIPLTLAGLKS 445
           +        F L  L + +N L   I       L +L  LDIS N+I   +      L +
Sbjct: 71  VEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129

Query: 446 LEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFM 505
           L+ ++   N+L    + A +   +L+  ++ +  L+      L     + ++        
Sbjct: 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189

Query: 506 GFIPDA-VGM------DLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVP--GLYRLR 556
                +   +      ++S      T+         L  L+++   L   VP   +  L 
Sbjct: 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLV 248

Query: 557 SLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNL 615
            LR L+LS+N ++      +  L  L  + L     +  V         P AF G   L
Sbjct: 249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVE--------PYAFRGLNYL 298

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 91.7 bits (228), Expect = 1e-19
 Identities = 57/288 (19%), Positives = 101/288 (35%), Gaps = 64/288 (22%)

Query: 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
           LS L  L +S N     +   F  L  LK+L++  N  V +   A   L +L +L L+  
Sbjct: 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162

Query: 165 PELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHD-- 222
                           NL  +            E+L +L  L  L L   N+   + D  
Sbjct: 163 ----------------NLTSIP----------TEALSHLHGLIVLRLRHLNIN-AIRDYS 195

Query: 223 FY--QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTC-IASLQALTHLN 279
           F     L VL +    +  T+       ++LT L + + ++   +P   +  L  L  LN
Sbjct: 196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLN 254

Query: 280 LSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGE 339
           LS+N ++  I                 ++L                L  + L   + +  
Sbjct: 255 LSYNPIST-IEGS------------MLHELL--------------RLQEIQLVGGQLA-V 286

Query: 340 IPLKI-TELKSLQALFLSNNLLIGEIPARI-GNLTYLQVIDLSHNMLS 385
           +       L  L+ L +S N  +  +   +  ++  L+ + L  N L+
Sbjct: 287 VEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 79.0 bits (195), Expect = 1e-15
 Identities = 44/225 (19%), Positives = 75/225 (33%), Gaps = 23/225 (10%)

Query: 375 QVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISG 434
           + +         ++P  I    +   L +  N +    Q E  +   L+ L+++ N +S 
Sbjct: 14  RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA 70

Query: 435 EIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAI 494
             P     L +L  +   SN L        T  +NL    I+ NK+   L         +
Sbjct: 71  VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130

Query: 495 QMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDGQVPG-L 552
           + ++                 + DN L   I    F  L  LE L L    L       L
Sbjct: 131 KSLE-----------------VGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEAL 172

Query: 553 YRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVP 597
             L  L  L L H ++      +   L  L +L +S+  +   + 
Sbjct: 173 SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT 217

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 69.4 bits (170), Expect = 2e-12
 Identities = 40/163 (24%), Positives = 61/163 (37%), Gaps = 9/163 (5%)

Query: 102 LCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELIL 161
           L  L  L  L L            F  L  LK L++S+  ++  +    +   NL  L +
Sbjct: 172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSI 231

Query: 162 KGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVH 221
                L  V    V +    L  L+ S+N         L+ L  L+ + L    L   V 
Sbjct: 232 THC-NLTAVPYLAVRHLV-YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVE 288

Query: 222 D--FY--QSLLVLNLGSNRFSGTLPCFAASAM-SLTVLKLDNN 259
              F     L VLN+  N+ + TL      ++ +L  L LD+N
Sbjct: 289 PYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSN 330

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  127 bits (320), Expect = 4e-31
 Identities = 79/506 (15%), Positives = 164/506 (32%), Gaps = 69/506 (13%)

Query: 108 LEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPEL 167
              L +S N  +   ++    LS L+ L +S+N+   +        + L  L L  N +L
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KL 81

Query: 168 GGVFPGWVGNFSMNLEKLDFSFNSF-CGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQS 226
             +      N    L+ LD SFN+F    I +    +  LK L L   +L  +       
Sbjct: 82  VKISCHPTVN----LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 227 LLVLNLGSNRFSGTLPCFA-ASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHL 285
           L +  +                        L            I  +   T  NL  +++
Sbjct: 138 LNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197

Query: 286 NYEISPRLVFF-----------EKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHN 334
              +      +            KL  L L+  + +     +I Q      +    +S+ 
Sbjct: 198 KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV 257

Query: 335 RFSGEIPLKI-----TELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIP 389
           +  G++  +      T LK+L    + +++            + + + + + +       
Sbjct: 258 KLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVS----GTR 313

Query: 390 LNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIV 449
           +  + C                       +     LD SNN ++  +      L  LE +
Sbjct: 314 MVHMLCP--------------------SKISPFLHLDFSNNLLTDTVFENCGHLTELETL 353

Query: 450 DFSSNNLS--GSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSF-QAIQMMDFSTNKFMG 506
               N L     + +  T+  +L+   I++N +S +      S+ +++  ++ S+N    
Sbjct: 354 ILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413

Query: 507 FIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHN 566
            I   +                      ++ L+L  N +      + +L +L+ L+++ N
Sbjct: 414 TIFRCL-------------------PPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN 454

Query: 567 SLTGQIPGNISSLQELTLLNLSYNSF 592
            L     G    L  L  + L  N +
Sbjct: 455 QLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  115 bits (289), Expect = 3e-27
 Identities = 78/468 (16%), Positives = 157/468 (33%), Gaps = 44/468 (9%)

Query: 177 NFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTG---NVHDFYQSLLVLNLG 233
           + S     L+ S N         +  L  L+ L +  N +     +V  F Q L  L+L 
Sbjct: 18  DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77

Query: 234 SNRFSGTLPCFAASAMSLTVLKLDNNS-VVGGIPTCIASLQALTHLNLSHNHLNYEISPR 292
            N+    + C     ++L  L L  N+     I     ++  L  L LS  HL       
Sbjct: 78  HNKLV-KISC--HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLP 134

Query: 293 LVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQA 352
           +       +L +           +  Q      L ++  ++  F   + + +  + +L+ 
Sbjct: 135 IAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLEL 194

Query: 353 LFLSNNLLIGE------IPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCF---QLLALIV 403
             +   L   +      I A++     L  + L++   + +  + I+       +    +
Sbjct: 195 SNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254

Query: 404 NNNNLSGEIQPEL-----DALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSG 458
           +N  L G++          +L +L I  + ++              ++ I +F+ +    
Sbjct: 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM 314

Query: 459 SLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGM---- 514
                 +K +   +   + N L+  +         ++ +    N+    +     M    
Sbjct: 315 VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE-LSKIAEMTTQM 373

Query: 515 ------DLSDNLLHGTIPKGLF-QLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNS 567
                 D+S N +     KG     + L  LN+S N L   +        ++ LDL  N 
Sbjct: 374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL-PPRIKVLDLHSNK 432

Query: 568 LTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNL 615
           +   IP  +  L+ L  LN++ N     VP         G F    +L
Sbjct: 433 IK-SIPKQVVKLEALQELNVASNQLK-SVP--------DGIFDRLTSL 470

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 86.8 bits (215), Expect = 4e-18
 Identities = 72/411 (17%), Positives = 136/411 (33%), Gaps = 53/411 (12%)

Query: 104 KLSFLEFLVLSSNAFTGRISTCFGGLSGLK-TLDLSYNKFVGVVPDAIMKLRNLRELILK 162
            +S L+FL LS+             L+  K  L L         P+ +         I+ 
Sbjct: 113 NMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF 172

Query: 163 GNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKH----LDLEKNNLTG 218
              +              NLE  +        +    L  L  L+      +L  NN+  
Sbjct: 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIET 232

Query: 219 NVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHL 278
             + F + L ++   +  +            S++ +KL              SL+AL+  
Sbjct: 233 TWNSFIRILQLVWHTTVWY-----------FSISNVKLQGQLDFRDFDYSGTSLKALSIH 281

Query: 279 NLSHNHLNYEISPRLVFFEKLLLLDLSFND---LSGPLPSKIAQTTEKAGLVLLDLSHNR 335
            +  +   +  S     F  + + + + +    +    PSKI+          LD S+N 
Sbjct: 282 QVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLH------LDFSNNL 335

Query: 336 FSGEIPLKITELKSLQALFLSNNLL--IGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIV 393
            +  +      L  L+ L L  N L  + +I      +  LQ +D+S N +S        
Sbjct: 336 LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD- 394

Query: 394 GCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSS 453
                                      SL  L++S+N ++  I   L     ++++D  S
Sbjct: 395 ----------------------CSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHS 430

Query: 454 NNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKF 504
           N +  S+   + K   L+  ++A N+L            ++Q +   TN +
Sbjct: 431 NKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 78.0 bits (192), Expect = 3e-15
 Identities = 43/204 (21%), Positives = 72/204 (35%), Gaps = 15/204 (7%)

Query: 88  NLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVP 147
            +                S +     + +        C   +S    LD S N     V 
Sbjct: 282 QVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVF 341

Query: 148 DAIMKLRNLRELILKGN-----PELGGVFPGWVGNFSMNLEKLDFSFNSF-CGEIPESLY 201
           +    L  L  LIL+ N      ++  +          +L++LD S NS    E      
Sbjct: 342 ENCGHLTELETLILQMNQLKELSKIAEMTTQMK-----SLQQLDISQNSVSYDEKKGDCS 396

Query: 202 YLKSLKHLDLEKNNLTGNVHD-FYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNS 260
           + KSL  L++  N LT  +       + VL+L SN+   ++P       +L  L + +N 
Sbjct: 397 WTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQ 455

Query: 261 VVGGIPTCI-ASLQALTHLNLSHN 283
            +  +P  I   L +L  + L  N
Sbjct: 456 -LKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 63.3 bits (154), Expect = 1e-10
 Identities = 56/293 (19%), Positives = 105/293 (35%), Gaps = 34/293 (11%)

Query: 328 LLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGS 387
           L+D S N     +P  ++  +    L +S N +     + I +L+ L+++ +SHN +   
Sbjct: 4   LVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL 60

Query: 388 IPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLT--LAGLKS 445
                    +L  L +++N L            +LK LD+S N     +P+      +  
Sbjct: 61  DISVFKFNQELEYLDLSHNKLVKIS---CHPTVNLKHLDLSFNAFD-ALPICKEFGNMSQ 116

Query: 446 LEIVDFSSNNLSGSLNDAITKWTNLKYF-SIARNKLSGNLPNWLFSFQAIQM-MDFSTNK 503
           L+ +  S+ +L  S    I      K    +         P  L  F    + + F TNK
Sbjct: 117 LKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNK 176

Query: 504 FMGFIPDAVGM------------DLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLD----- 546
              FI D                 L DN     +          +  NL+ N ++     
Sbjct: 177 EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNS 236

Query: 547 -GQVPGLYRLRSLRALDLSHNSLTGQIPGNI-----SSLQELTLLNLSYNSFS 593
             ++  L    ++    +S+  L GQ+         +SL+ L++  +  + F 
Sbjct: 237 FIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG 289

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 50.2 bits (120), Expect = 2e-06
 Identities = 34/213 (15%), Positives = 62/213 (29%), Gaps = 15/213 (7%)

Query: 421 SLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKL 480
              IL+IS N IS      +  L  L I+  S N +             L+Y  ++ NKL
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81

Query: 481 SGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAV--------GMDLSDNLLHGTIPKGLFQL 532
              +         ++ +D S N F                 + LS   L  +    +  L
Sbjct: 82  V-KIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHL 138

Query: 533 QGLEYLNLSFNFLDGQVPGLY----RLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLS 588
              + L +       +            SL  +  ++      +  ++ ++  L L N+ 
Sbjct: 139 NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIK 198

Query: 589 YNSFSGFVPWKQGYQKFPGAFAGNPNLCLESSH 621
                    +               NL L +  
Sbjct: 199 CVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIE 231

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  128 bits (322), Expect = 4e-31
 Identities = 70/341 (20%), Positives = 120/341 (35%), Gaps = 61/341 (17%)

Query: 121 RISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN-----PELGGVFPGWV 175
           ++  C    +G   L++  +     +PD +    ++  L++  N     P L        
Sbjct: 33  KMRACL--NNGNAVLNVGESGL-TTLPDCL--PAHITTLVIPDNNLTSLPALPP------ 81

Query: 176 GNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSN 235
                 L  L+ S N     +P     L  L        +L          L  L +  N
Sbjct: 82  -----ELRTLEVSGNQL-TSLPVLPPGLLELSIFSNPLTHLP----ALPSGLCKLWIFGN 131

Query: 236 RFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVF 295
           + + +LP        L  L + +N     + +  A    L  L   +N L   +      
Sbjct: 132 QLT-SLP---VLPPGLQELSVSDNQ----LASLPALPSELCKLWAYNNQLT-SLPMLP-- 180

Query: 296 FEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFL 355
              L  L +S N L+  LP+  ++      L  L   +NR +  +P        L+ L +
Sbjct: 181 -SGLQELSVSDNQLAS-LPTLPSE------LYKLWAYNNRLT-SLP---ALPSGLKELIV 228

Query: 356 SNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPE 415
           S N L   +P     L  L    +S N L+ S+P+       LL+L V  N L+  +   
Sbjct: 229 SGNRL-TSLPVLPSELKEL---MVSGNRLT-SLPMLPS---GLLSLSVYRNQLT-RLPES 279

Query: 416 LDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNL 456
           L  L S   +++  N +S     TL  L+ +      S  +
Sbjct: 280 LIHLSSETTVNLEGNPLS---ERTLQALREITSAPGYSGPI 317

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  115 bits (290), Expect = 5e-27
 Identities = 80/385 (20%), Positives = 130/385 (33%), Gaps = 64/385 (16%)

Query: 202 YLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSV 261
                  L++ ++ LT         +  L +  N  + +LP   A    L  L++  N +
Sbjct: 38  LNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLT-SLP---ALPPELRTLEVSGNQL 93

Query: 262 VGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTT 321
              +P     L  L+  +    HL    S        L  L +  N L+  LP       
Sbjct: 94  TS-LPVLPPGLLELSIFSNPLTHLPALPS-------GLCKLWIFGNQLTS-LPVLPPGLQ 144

Query: 322 EKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSH 381
           E      L +S N+ +  +P   +EL  L      NN L   +P     L  L    +S 
Sbjct: 145 E------LSVSDNQLA-SLPALPSELCKLW---AYNNQLT-SLPMLPSGLQEL---SVSD 190

Query: 382 NMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDA-LDSLKILDISNNQISGEIPLTL 440
           N L+ S+P       +L  L   NN L+      L A    LK L +S N+++  +P+  
Sbjct: 191 NQLA-SLPTLP---SELYKLWAYNNRLT-----SLPALPSGLKELIVSGNRLT-SLPVLP 240

Query: 441 AGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFS 500
           + LK L     S N L+ SL    +    L   S+ RN+L+  LP  L    +   ++  
Sbjct: 241 SELKEL---MVSGNRLT-SLPMLPS---GLLSLSVYRNQLT-RLPESLIHLSSETTVN-- 290

Query: 501 TNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRA 560
                          L  N L     + L ++      +      D       R      
Sbjct: 291 ---------------LEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALH 335

Query: 561 LDLSHNSLTGQIPGNISSLQELTLL 585
           L  + + L     G  +      + 
Sbjct: 336 LAAA-DWLVPAREGEPAPADRWHMF 359

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  114 bits (286), Expect = 1e-26
 Identities = 69/345 (20%), Positives = 120/345 (34%), Gaps = 65/345 (18%)

Query: 250 SLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDL 309
              VL +  + +   +P C+     +T L +  N+L   +        +L  L++S N L
Sbjct: 41  GNAVLNVGESGL-TTLPDCL--PAHITTLVIPDNNLT-SLPALP---PELRTLEVSGNQL 93

Query: 310 SGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIG 369
           +  LP       E   L +                     L  L++  N L   +P    
Sbjct: 94  TS-LPVLPPGLLE---LSIFSNPLTHLP-------ALPSGLCKLWIFGNQLT-SLPVLPP 141

Query: 370 NLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPEL-DALDSLKILDIS 428
            L  L    +S N L+ S+P       +L  L   NN L+      L      L+ L +S
Sbjct: 142 GLQEL---SVSDNQLA-SLPALP---SELCKLWAYNNQLT-----SLPMLPSGLQELSVS 189

Query: 429 NNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWL 488
           +NQ++  +P   + L  L      +N L+ SL    +    LK   ++ N+L+ +LP   
Sbjct: 190 DNQLA-SLPTLPSELYKLWA---YNNRLT-SLPALPS---GLKELIVSGNRLT-SLPVLP 240

Query: 489 FSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQ 548
              + +                     +S N L  ++P       GL  L++  N L   
Sbjct: 241 SELKEL--------------------MVSGNRL-TSLPM---LPSGLLSLSVYRNQLTRL 276

Query: 549 VPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFS 593
              L  L S   ++L  N L+ +    +  +      +     F 
Sbjct: 277 PESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFD 321

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 70.7 bits (173), Expect = 7e-13
 Identities = 51/260 (19%), Positives = 80/260 (30%), Gaps = 28/260 (10%)

Query: 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
              L+ L +S N    ++++     S L  L    N+    +P        L+EL +  N
Sbjct: 140 PPGLQELSVSDN----QLASLPALPSELCKLWAYNNQLT-SLPMLP---SGLQELSVSDN 191

Query: 165 PELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFY 224
            +L    P         L KL    N     +P        LK L +  N LT ++    
Sbjct: 192 -QLA-SLPTLPSE----LYKLWAYNNRLT-SLPALP---SGLKELIVSGNRLT-SLPVLP 240

Query: 225 QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNH 284
             L  L +  NR + +LP        L  L +  N +   +P  +  L + T +NL  N 
Sbjct: 241 SELKELMVSGNRLT-SLP---MLPSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNP 295

Query: 285 LNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLK- 343
           L+      L                     S   +T          L   R     P   
Sbjct: 296 LSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADR 355

Query: 344 ---ITELKSLQALFLSNNLL 360
                +  +  A  L  + L
Sbjct: 356 WHMFGQEDNADAFSLFLDRL 375

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 66.5 bits (162), Expect = 1e-11
 Identities = 52/269 (19%), Positives = 85/269 (31%), Gaps = 38/269 (14%)

Query: 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
            S L  L +  N    ++++      GL+ L +S N+    +P    +L  L       N
Sbjct: 120 PSGLCKLWIFGN----QLTSLPVLPPGLQELSVSDNQL-ASLPALPSELCKLW---AYNN 171

Query: 165 -----PELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGN 219
                P L              L++L  S N     +P        L  L    N LT +
Sbjct: 172 QLTSLPMLPS-----------GLQELSVSDNQLA-SLPTLP---SELYKLWAYNNRLT-S 215

Query: 220 VHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLN 279
           +      L  L +  NR + +LP        L  L +  N +   +P        L  L+
Sbjct: 216 LPALPSGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLTS-LP---MLPSGLLSLS 267

Query: 280 LSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGE 339
           +  N L   +   L+       ++L  N LS      + + T   G     +  +     
Sbjct: 268 VYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGAS 326

Query: 340 IPLKITELKSLQALFLSNNLLIGEIPARI 368
            P +   L    A +L         PA  
Sbjct: 327 APRETRALHLAAADWLVPAREGEPAPADR 355

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 55.3 bits (133), Expect = 4e-08
 Identities = 27/158 (17%), Positives = 51/158 (32%), Gaps = 35/158 (22%)

Query: 438 LTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMM 497
           +         +++   + L+ +L D +    ++    I  N L+ +LP      + +   
Sbjct: 34  MRACLNNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-SLPALPPELRTL--- 86

Query: 498 DFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRS 557
                            ++S N L  ++P     L  L   +     L            
Sbjct: 87  -----------------EVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPAL------PSG 122

Query: 558 LRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGF 595
           L  L +  N LT  +P     LQEL   ++S N  +  
Sbjct: 123 LCKLWIFGNQLT-SLPVLPPGLQEL---SVSDNQLASL 156

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  120 bits (304), Expect = 3e-30
 Identities = 56/351 (15%), Positives = 112/351 (31%), Gaps = 62/351 (17%)

Query: 250 SLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDL 309
               L    ++ +      ++  Q   + + +  H  +  +          +   +   L
Sbjct: 13  GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS----NNPQIETRTGRAL 68

Query: 310 SGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIG 369
                  +   T+  G V L+L       + P +   L  LQ + +    L+ E+P  + 
Sbjct: 69  KA-TADLLEDATQP-GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ 124

Query: 370 NLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNL---------SGEIQPELDALD 420
               L+ + L+ N L  ++P +I    +L  L +              S +   E   L 
Sbjct: 125 QFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183

Query: 421 SLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKL 480
           +L+ L +    I   +P ++A L++L+ +   ++ LS +L  AI     L+         
Sbjct: 184 NLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEEL------- 234

Query: 481 SGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNL 540
                                             DL         P        L+ L L
Sbjct: 235 ----------------------------------DLRGCTALRNYPPIFGGRAPLKRLIL 260

Query: 541 S-FNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYN 590
              + L      ++RL  L  LDL       ++P  I+ L    ++ +  +
Sbjct: 261 KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  119 bits (301), Expect = 8e-30
 Identities = 53/337 (15%), Positives = 103/337 (30%), Gaps = 41/337 (12%)

Query: 129 LSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFS 188
            SG + L    +  +    D + + +                        + N  +++  
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA-------NSNNPQIETR 63

Query: 189 FNSFCGEIPESLYYLKS--LKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAA 246
                    + L          L+L    L                         P  A 
Sbjct: 64  TGRALKATADLLEDATQPGRVALELRSVPLP----------------------QFPDQAF 101

Query: 247 SAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSF 306
               L  + +D   ++  +P  +     L  L L+ N L   +   +    +L  L +  
Sbjct: 102 RLSHLQHMTIDAAGLME-LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA 159

Query: 307 NDLSGPLPSKIAQTTEKAG------LVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLL 360
                 LP  +A T           L  L L        +P  I  L++L++L + N+ L
Sbjct: 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPL 218

Query: 361 IGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALD 420
              +   I +L  L+ +DL       + P    G   L  LI+ + +    +  ++  L 
Sbjct: 219 S-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT 277

Query: 421 SLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLS 457
            L+ LD+        +P  +A L +  I+    +  +
Sbjct: 278 QLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  111 bits (279), Expect = 5e-27
 Identities = 58/323 (17%), Positives = 99/323 (30%), Gaps = 47/323 (14%)

Query: 101 RLCKLSFLEFLVLSSNAFTGRIST-CFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLREL 159
           R    +  +    +  A              G   L+L         PD   +L +L+ +
Sbjct: 51  RQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHM 109

Query: 160 ILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGN 219
            +     L    P  +  F+  LE L  + N     +P S+  L  L+ L +        
Sbjct: 110 TIDAA-GLM-ELPDTMQQFA-GLETLTLARNPL-RALPASIASLNRLRELSIRACPELTE 165

Query: 220 VHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLN 279
           + +         L S   SG          +L  L+L+   +   +P  IA+LQ L  L 
Sbjct: 166 LPE--------PLASTDASGEHQGLV----NLQSLRLEWTGIRS-LPASIANLQNLKSLK 212

Query: 280 LSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGE 339
           + ++ L+                          L   I        L  LDL        
Sbjct: 213 IRNSPLSA-------------------------LGPAIHHLP---KLEELDLRGCTALRN 244

Query: 340 IPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLL 399
            P        L+ L L +   +  +P  I  LT L+ +DL   +    +P  I       
Sbjct: 245 YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304

Query: 400 ALIVNNNNLSGEIQPELDALDSL 422
            ++V  +  +   Q    A  + 
Sbjct: 305 IILVPPHLQAQLDQHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  100 bits (252), Expect = 2e-23
 Identities = 33/253 (13%), Positives = 80/253 (31%), Gaps = 19/253 (7%)

Query: 347 LKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNN 406
               + L+   +  +      +         D +    +               +     
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN-----SNNPQIETRTG 65

Query: 407 NLSGEIQPELDAL--DSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAI 464
                    L+         L++ +  +  + P     L  L+ +   +  L   L D +
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTM 123

Query: 465 TKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGT 524
            ++  L+  ++ARN L   LP  + S   ++ +       +  +P+ +            
Sbjct: 124 QQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLA--------STD 174

Query: 525 IPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTL 584
                  L  L+ L L +  +      +  L++L++L + ++ L+  +   I  L +L  
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEE 233

Query: 585 LNLSYNSFSGFVP 597
           L+L   +     P
Sbjct: 234 LDLRGCTALRNYP 246

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 68.0 bits (167), Expect = 2e-12
 Identities = 31/182 (17%), Positives = 58/182 (31%), Gaps = 16/182 (8%)

Query: 443 LKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTN 502
               E + F  +      +D +++W         R   +    N          ++  T 
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS-----NNPQIETRTG 65

Query: 503 KFMGFIPDAVGM---------DLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLY 553
           + +    D +           +L    L    P   F+L  L+++ +    L      + 
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQ 124

Query: 554 RLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNP 613
           +   L  L L+ N L   +P +I+SL  L  L++        +P         G   G  
Sbjct: 125 QFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183

Query: 614 NL 615
           NL
Sbjct: 184 NL 185

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  113 bits (283), Expect = 2e-26
 Identities = 95/486 (19%), Positives = 165/486 (33%), Gaps = 55/486 (11%)

Query: 132 LKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN-----PELGGVFPGWVGNFSMNLEKLD 186
            K L LS N    +    I  L  LR L L  N          VF      F+ +LE LD
Sbjct: 54  TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF--HVF-----LFNQDLEYLD 106

Query: 187 FSFNSFCGEIPESLYYLKSLKHLDLEKNNLT----GNVHDFYQSLLVLNLGSNRF-SGTL 241
            S N     I      + SL+HLDL  N+               L  L L + +F    L
Sbjct: 107 VSHNRL-QNISCCP--MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDL 163

Query: 242 PCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLL 301
              A   +S  +L L +  + GG    +      T L+L  +  +       +    L  
Sbjct: 164 LPVAHLHLSCILLDLVSYHIKGGETESLQIPN-TTVLHLVFHPNSLFSVQVNMSVNALGH 222

Query: 302 LDLSFNDLS----GPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSN 357
           L LS   L+      L + +++ T    L+ + L H   + +  +K+   +      +  
Sbjct: 223 LQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKL--FQFFWPRPVEY 280

Query: 358 NLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELD 417
                     I NLT  + ID      S +   +      L+   V N       +    
Sbjct: 281 L--------NIYNLTITERIDREEFTYSETALKS------LMIEHVKNQVFLFSKEALYS 326

Query: 418 ALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIAR 477
               + I  +S +       +      S   ++F+ N  + S+    +    L+   + R
Sbjct: 327 VFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQR 386

Query: 478 NKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVG-----------MDLSDNLLHGTIP 526
           N L  N        + +  ++            A             ++LS N+L G++ 
Sbjct: 387 NGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF 445

Query: 527 KGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLN 586
           + L     ++ L+L  N +      +  L++L+ L+++ N L     G    L  L  + 
Sbjct: 446 RCL--PPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIW 503

Query: 587 LSYNSF 592
           L  N +
Sbjct: 504 LHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  112 bits (281), Expect = 4e-26
 Identities = 96/484 (19%), Positives = 178/484 (36%), Gaps = 55/484 (11%)

Query: 108 LEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPEL 167
            + L LS N+ +         LS L+ L LS+N+   +     +  ++L  L +  N  L
Sbjct: 54  TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RL 112

Query: 168 GGVFPGWVGNFSMNLEKLDFSFNSF-CGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQS 226
             +    +     +L  LD SFN F    + +    L  L  L L               
Sbjct: 113 QNISCCPMA----SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAH 168

Query: 227 L----LVLNLGSNRFS-GTLPCFAASAMSLTVLKLDNNSV----VGGIPTCIASLQALTH 277
           L    ++L+L S     G          ++  L    NS+    V      +  LQ L++
Sbjct: 169 LHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ-LSN 227

Query: 278 LNLSHNHLNYEISPRLVFFEKLLLLDLSFN--DLSGPLPSKIAQTTEKAGLVLLDLSHNR 335
           + L+  +    ++          LL+++    + +     K+ Q      +  L++ +  
Sbjct: 228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT 287

Query: 336 FSGEIPLKI-----TELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPL 390
            +  I  +      T LKSL    + N + +    A       + +  LS +      P 
Sbjct: 288 ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS----DTPF 343

Query: 391 NIVGCF----QLLALIVNNNNLSGEIQPELDALDSLKILDISNNQIS--GEIPLTLAGLK 444
             + C         L    N  +  +      L  L+ L +  N +    ++ L    + 
Sbjct: 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS 403

Query: 445 SLEIVDFSSNNLSGSLNDAITKW-TNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNK 503
           SLE +D S N+L+    D    W  ++   +++ N L+G++   L     ++++D   N+
Sbjct: 404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNR 461

Query: 504 FMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLY-RLRSLRALD 562
            M                  +IPK +  LQ L+ LN++ N L     G++ RL SL+ + 
Sbjct: 462 IM------------------SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIW 503

Query: 563 LSHN 566
           L  N
Sbjct: 504 LHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 81.1 bits (200), Expect = 4e-16
 Identities = 66/364 (18%), Positives = 124/364 (34%), Gaps = 48/364 (13%)

Query: 260 SVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVF--FEKLLLLDLSFNDLSGPLPSKI 317
            V   +P           L+LS N ++ E+          +L +L LS N +   L   +
Sbjct: 45  HVPKDLPP------RTKALSLSQNSIS-ELRMP-DISFLSELRVLRLSHNRIRS-LDFHV 95

Query: 318 AQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIP--ARIGNLTYLQ 375
               +   L  LD+SHNR      +    + SL+ L LS N     +P     GNLT L 
Sbjct: 96  FLFNQD--LEYLDVSHNRLQN---ISCCPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLT 149

Query: 376 VIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPE----LDALDSLKILDISNNQ 431
            + LS       + L  V    L  ++++  +   +        +     L ++   N+ 
Sbjct: 150 FLGLSAAKFR-QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSL 208

Query: 432 ISGEIPLTLAGLKSLEIVDFSSNNLSG----SLNDAITKWTNLKYFSIARNKLSGNLPNW 487
            S ++ +++  L  L++ +   N+ +     +    +T+   L   ++   + +      
Sbjct: 209 FSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVK 268

Query: 488 LFSFQ---AIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTI-----------PKGLF-QL 532
           LF F     ++ ++         I           L    I            + L+   
Sbjct: 269 LFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVF 328

Query: 533 QGLEYLNLSFN---FLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSY 589
             +    LS +   F+    P      S   L+ + N  T  +    S+L+ L  L L  
Sbjct: 329 AEMNIKMLSISDTPFIHMVCPP--SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQR 386

Query: 590 NSFS 593
           N   
Sbjct: 387 NGLK 390

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 66.0 bits (161), Expect = 2e-11
 Identities = 48/187 (25%), Positives = 76/187 (40%), Gaps = 13/187 (6%)

Query: 104 KLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKG 163
             + +   +LS +        C    S    L+ + N F   V      L+ L+ LIL+ 
Sbjct: 327 VFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQR 386

Query: 164 NP--ELGGVFPGWVGNFSMNLEKLDFSFNSF-CGEIPESLYYLKSLKHLDLEKNNLTGNV 220
           N       V      N S +LE LD S NS        +  + +S+  L+L  N LTG+V
Sbjct: 387 NGLKNFFKVA-LMTKNMS-SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV 444

Query: 221 HD-FYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNN---SVVGGIPTCIASLQALT 276
                  + VL+L +NR   ++P       +L  L + +N   SV  G+      L +L 
Sbjct: 445 FRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGV---FDRLTSLQ 500

Query: 277 HLNLSHN 283
           ++ L  N
Sbjct: 501 YIWLHDN 507

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  110 bits (276), Expect = 7e-26
 Identities = 75/487 (15%), Positives = 143/487 (29%), Gaps = 107/487 (21%)

Query: 108 LEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPEL 167
               V ++       +     L+ L +LD   +    +    I KL  L +LI   N   
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSN--- 74

Query: 168 GGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSL 227
                        N+  LD S                +L +L  + N LT         L
Sbjct: 75  -------------NITTLDLS-------------QNTNLTYLACDSNKLTNLDVTPLTKL 108

Query: 228 LVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNY 287
             LN  +N+ +  L                           ++    LT+LN + N L  
Sbjct: 109 TYLNCDTNKLT-KLD--------------------------VSQNPLLTYLNCARNTLT- 140

Query: 288 EISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITEL 347
                +    +L  LD   N     L       T +  L  LD S N+ +    L +++ 
Sbjct: 141 --EIDVSHNTQLTELDCHLNKKITKLDV-----TPQTQLTTLDCSFNKITE---LDVSQN 190

Query: 348 KSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNN 407
           K L  L    N +  ++   +     L  +D S N L+    +++    QL     + N 
Sbjct: 191 KLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLTE---IDVTPLTQLTYFDCSVNP 244

Query: 408 LSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKW 467
           L+   + ++  L  L  L      +     + L     L             L+  +T  
Sbjct: 245 LT---ELDVSTLSKLTTLHCIQTDLLE---IDLTHNTQLIYFQAEGCRKIKELD--VTHN 296

Query: 468 TNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPK 527
           T L         ++               +D S N  + ++       L++  L   +  
Sbjct: 297 TQLYLLDCQAAGIT--------------ELDLSQNPKLVYL------YLNNTELT-ELD- 334

Query: 528 GLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNL 587
            +     L+ L+     +      + ++ +L     +           +++      ++ 
Sbjct: 335 -VSHNTKLKSLSCVNAHIQ-DFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSP 392

Query: 588 SYNSFSG 594
                 G
Sbjct: 393 DLLDQFG 399

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  101 bits (254), Expect = 5e-23
 Identities = 64/393 (16%), Positives = 133/393 (33%), Gaps = 58/393 (14%)

Query: 203 LKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVV 262
             S      E         +   +L  L+  ++  +  +         LT L   +N++ 
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTGIE-KLTGLTKLICTSNNIT 77

Query: 263 GGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTE 322
             +   ++    LT+L    N L    +  +    KL  L+   N L+    S+      
Sbjct: 78  T-LD--LSQNTNLTYLACDSNKLT---NLDVTPLTKLTYLNCDTNKLTKLDVSQNPL--- 128

Query: 323 KAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHN 382
              L  L+ + N  +    + ++    L  L    N  I ++   +   T L  +D S N
Sbjct: 129 ---LTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFN 180

Query: 383 MLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAG 442
            ++    L++     L  L  + NN++   + +L+    L  LD S+N+++    + +  
Sbjct: 181 KITE---LDVSQNKLLNRLNCDTNNIT---KLDLNQNIQLTFLDCSSNKLTE---IDVTP 231

Query: 443 LKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTN 502
           L  L   D S N L+  L+  ++  + L      +  L   +   L     +        
Sbjct: 232 LTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLL-EID--LTHNTQLIYFQAEGC 285

Query: 503 KFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALD 562
           + +  +                    +     L  L+     +  ++  L +   L  L 
Sbjct: 286 RKIKELD-------------------VTHNTQLYLLDCQAAGIT-ELD-LSQNPKLVYLY 324

Query: 563 LSHNSLTGQIPGNISSLQELTLLNLSYNSFSGF 595
           L++  LT ++   +S   +L  L+        F
Sbjct: 325 LNNTELT-ELD--VSHNTKLKSLSCVNAHIQDF 354

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 99.4 bits (248), Expect = 3e-22
 Identities = 68/421 (16%), Positives = 139/421 (33%), Gaps = 73/421 (17%)

Query: 181 NLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGT 240
           N      +          S   L +L  LD   +++T                       
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT----------------------D 56

Query: 241 LPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLL 300
           +         LT L   +N++   +   ++    LT+L    N L    +  +    KL 
Sbjct: 57  MTGI-EKLTGLTKLICTSNNIT-TLD--LSQNTNLTYLACDSNKLT---NLDVTPLTKLT 109

Query: 301 LLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLL 360
            L+   N L+    S+         L  L+ + N  +    + ++    L  L    N  
Sbjct: 110 YLNCDTNKLTKLDVSQNPL------LTYLNCARNTLT---EIDVSHNTQLTELDCHLNKK 160

Query: 361 IGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALD 420
           I ++   +   T L  +D S N ++    L++     L  L  + NN++   + +L+   
Sbjct: 161 ITKLD--VTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNIT---KLDLNQNI 212

Query: 421 SLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKL 480
            L  LD S+N+++    + +  L  L   D S N L+  L+  ++  + L      +  L
Sbjct: 213 QLTFLDCSSNKLTE---IDVTPLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDL 266

Query: 481 S----GNLPN----WLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQL 532
                 +            + I+ +D + N  +  +      D     +   +   L Q 
Sbjct: 267 LEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLL------DCQAAGIT-ELD--LSQN 317

Query: 533 QGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSF 592
             L YL L+   L  ++  +     L++L   +  +      ++  +  L     +    
Sbjct: 318 PKLVYLYLNNTELT-ELD-VSHNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQT 373

Query: 593 S 593
            
Sbjct: 374 I 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 90.9 bits (226), Expect = 1e-19
 Identities = 73/400 (18%), Positives = 133/400 (33%), Gaps = 49/400 (12%)

Query: 104 KLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKG 163
           +L+ L  L   +++ T    T    L+GL  L  + N    +    + +  NL  L    
Sbjct: 40  QLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDS 94

Query: 164 NPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDF 223
           N +L  +    V   +  L  L+   N    ++  S      L +L+  +N LT      
Sbjct: 95  N-KLTNLD---VTPLT-KLTYLNCDTNKL-TKLDVSQ--NPLLTYLNCARNTLTEIDVSH 146

Query: 224 YQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHN 283
              L  L+   N+    L     +   LT L    N +   +   ++  + L  LN   N
Sbjct: 147 NTQLTELDCHLNKKITKLDVTPQT--QLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTN 201

Query: 284 HLNYEISPRLVFFEKLLLLDLSFNDLS----GPLPS-----------KIAQTTEKAGLVL 328
           ++       L    +L  LD S N L+     PL                  +  + L  
Sbjct: 202 NIT---KLDLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTT 258

Query: 329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSI 388
           L            + +T    L          I E+   + + T L ++D     ++   
Sbjct: 259 LHCIQTDLLE---IDLTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT--- 310

Query: 389 PLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEI 448
            L++    +L+ L +NN  L+ E+  ++     LK L   N  I  +   ++  + +L  
Sbjct: 311 ELDLSQNPKLVYLYLNNTELT-EL--DVSHNTKLKSLSCVNAHIQ-DFS-SVGKIPALNN 365

Query: 449 VDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWL 488
              +         + +T  +     S       GN  N  
Sbjct: 366 NFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIE 405

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 30/172 (17%), Positives = 57/172 (33%), Gaps = 30/172 (17%)

Query: 420 DSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNK 479
           D+      +  ++     ++   L +L  +D  +++++      I K T L       N 
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNN 75

Query: 480 LSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLN 539
           ++  L   L     +  +   +NK                     +   +  L  L YLN
Sbjct: 76  IT-TLD--LSQNTNLTYLACDSNKL------------------TNLD--VTPLTKLTYLN 112

Query: 540 LSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNS 591
              N L            L  L+ + N+LT     ++S   +LT L+   N 
Sbjct: 113 CDTNKLTKLDVSQ--NPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNK 159

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  107 bits (268), Expect = 2e-25
 Identities = 68/323 (21%), Positives = 120/323 (37%), Gaps = 52/323 (16%)

Query: 250 SLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDL 309
              +L L NN +         +L+ L  L L +N ++ +ISP             +F  L
Sbjct: 53  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPG------------AFAPL 99

Query: 310 SGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARI- 368
                           L  L LS N+   E+P K+   K+LQ L +  N  I ++   + 
Sbjct: 100 VK--------------LERLYLSKNQLK-ELPEKM--PKTLQELRVHENE-ITKVRKSVF 141

Query: 369 GNLTYLQVIDLSHNML-SGSIPLNI-VGCFQLLALIVNNNNLSGEIQPELDALDSLKILD 426
             L  + V++L  N L S  I      G  +L  + + + N++  I        SL  L 
Sbjct: 142 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELH 198

Query: 427 ISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPN 486
           +  N+I+     +L GL +L  +  S N++S   N ++    +L+   +  NKL   +P 
Sbjct: 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPG 257

Query: 487 WLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLD 546
            L   + IQ++    N       +               P    +      ++L  N + 
Sbjct: 258 GLADHKYIQVVYLHNNNISAIGSNDFCP-----------PGYNTKKASYSGVSLFSNPVQ 306

Query: 547 GQV--PGLYR-LRSLRALDLSHN 566
                P  +R +    A+ L + 
Sbjct: 307 YWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  107 bits (268), Expect = 2e-25
 Identities = 61/307 (19%), Positives = 109/307 (35%), Gaps = 41/307 (13%)

Query: 329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARI-GNLTYLQVIDLSHNMLSGS 387
           +  S      ++P  +        L L NN  I EI      NL  L  + L +N +S  
Sbjct: 36  VQCSDLGLE-KVPKDLPP--DTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKIS-K 90

Query: 388 IPLNI-VGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSL 446
           I         +L  L ++ N L  E+  ++    +L+ L +  N+I+        GL  +
Sbjct: 91  ISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQM 147

Query: 447 EIVDFSSNNLSGSL--NDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKF 504
            +V+  +N L  S   N A      L Y  IA   ++  +P  L    ++  +    NK 
Sbjct: 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPP--SLTELHLDGNKI 204

Query: 505 MGFIPDAV--------GMDLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDGQVPGLYRL 555
              +  A          + LS N +   +  G       L  L+L+ N L     GL   
Sbjct: 205 -TKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLVKVPGGLADH 262

Query: 556 RSLRALDLSHNSLTG------QIPGNISSLQELTLLNLSYNSFSGF-VPWKQGYQKFPGA 608
           + ++ + L +N+++         PG  +     + ++L  N    + +         P  
Sbjct: 263 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ--------PST 314

Query: 609 FAGNPNL 615
           F      
Sbjct: 315 FRCVYVR 321

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  104 bits (262), Expect = 1e-24
 Identities = 62/338 (18%), Positives = 108/338 (31%), Gaps = 73/338 (21%)

Query: 130 SGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSF 189
                LDL  NK   +       L+NL  LIL  N                 + K+    
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN----------------KISKIS--- 92

Query: 190 NSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAM 249
                  P +   L  L+ L L KN L               L                 
Sbjct: 93  -------PGAFAPLVKLERLYLSKNQLK-------------ELPEKMPK----------- 121

Query: 250 SLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVF--FEKLLLLDLSFN 307
           +L  L++  N +     +    L  +  + L  N L         F   +KL  + ++  
Sbjct: 122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181

Query: 308 DLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI-TELKSLQALFLSNNLLIGEIPA 366
           +++  +P  +        L  L L  N+ + ++       L +L  L LS N  I  +  
Sbjct: 182 NITT-IPQGLP-----PSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFN-SISAVDN 233

Query: 367 RI-GNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPE-------LDA 418
               N  +L+ + L++N L   +P  +     +  + ++NNN+S  I             
Sbjct: 234 GSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTK 291

Query: 419 LDSLKILDISNNQIS-GEI-PLTLAGLKSLEIVDFSSN 454
             S   + + +N +   EI P T   +     V   + 
Sbjct: 292 KASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  102 bits (255), Expect = 9e-24
 Identities = 64/292 (21%), Positives = 96/292 (32%), Gaps = 33/292 (11%)

Query: 108 LEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN--P 165
              L L +N  T      F  L  L TL L  NK   + P A   L  L  L L  N   
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113

Query: 166 EL-GGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTG---NVH 221
           EL   +           L++L    N            L  +  ++L  N L        
Sbjct: 114 ELPEKMPK--------TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 165

Query: 222 DFY--QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLN 279
            F   + L  + +     + T+P       SLT L LD N +       +  L  L  L 
Sbjct: 166 AFQGMKKLSYIRIADTNIT-TIPQGLPP--SLTELHLDGNKITKVDAASLKGLNNLAKLG 222

Query: 280 LSHNHLNYEISPR-LVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSG 338
           LS N ++  +    L     L  L L+ N L   +P  +A       + ++ L +N  S 
Sbjct: 223 LSFNSIS-AVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHK---YIQVVYLHNNNISA 277

Query: 339 ------EIPLKITELKSLQALFLSNN-LLIGEIPARI-GNLTYLQVIDLSHN 382
                   P   T+  S   + L +N +   EI       +     + L + 
Sbjct: 278 IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 73.1 bits (180), Expect = 3e-14
 Identities = 47/244 (19%), Positives = 85/244 (34%), Gaps = 23/244 (9%)

Query: 104 KLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKG 163
            L  LE L LS N     +         L+ L +  N+   V       L  +  + L  
Sbjct: 98  PLVKLERLYLSKNQLK-ELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT 154

Query: 164 NP-ELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTG-NVH 221
           NP +  G+  G        L  +  +  +    IP+ L    SL  L L+ N +T  +  
Sbjct: 155 NPLKSSGIENGAFQGMK-KLSYIRIADTNI-TTIPQGL--PPSLTELHLDGNKITKVDAA 210

Query: 222 DF--YQSLLVLNLGSNRFSGTLPCFA-ASAMSLTVLKLDNNSVVGGIPTCIASLQALTHL 278
                 +L  L L  N  S  +   + A+   L  L L+NN +V  +P  +A  + +  +
Sbjct: 211 SLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVV 268

Query: 279 NLSHNHL----NYEISPRLVF--FEKLLLLDLSFNDLS-GPLPSKIAQTTEKAGLVLLDL 331
            L +N++    + +  P            + L  N +    +     +         + L
Sbjct: 269 YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV--RAAVQL 326

Query: 332 SHNR 335
            + +
Sbjct: 327 GNYK 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  103 bits (259), Expect = 3e-24
 Identities = 62/337 (18%), Positives = 111/337 (32%), Gaps = 72/337 (21%)

Query: 130 SGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSF 189
                LDL  N    +  D    L++L  L+L  N                 + K+    
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN----------------KISKIH--- 94

Query: 190 NSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAM 249
                   ++   L+ L+ L + KN+L               +  N  S           
Sbjct: 95  -------EKAFSPLRKLQKLYISKNHLV-------------EIPPNLPS----------- 123

Query: 250 SLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFE-KLLLLDLSFND 308
           SL  L++ +N +        + L+ +  + +  N L         F   KL  L +S   
Sbjct: 124 SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAK 183

Query: 309 LSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI-TELKSLQALFLSNNLLIGEIPAR 367
           L+G +P  + +T  +     L L HN+    I L+       L  L L +N  I  I   
Sbjct: 184 LTG-IPKDLPETLNE-----LHLDHNKIQ-AIELEDLLRYSKLYRLGLGHN-QIRMIENG 235

Query: 368 I-GNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPE-------LDAL 419
               L  L+ + L +N LS  +P  +     L  + ++ NN++ ++              
Sbjct: 236 SLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKR 293

Query: 420 DSLKILDISNNQISGEI--PLTLAGLKSLEIVDFSSN 454
                + + NN +      P T   +     + F + 
Sbjct: 294 AYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  102 bits (257), Expect = 5e-24
 Identities = 66/307 (21%), Positives = 106/307 (34%), Gaps = 42/307 (13%)

Query: 329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPAR-IGNLTYLQVIDLSHNMLSGS 387
           +  S       +P +I+       L L NN  I E+       L +L  + L +N +S  
Sbjct: 38  VQCSDLGLK-AVPKEIS--PDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKIS-K 92

Query: 388 IPLNI-VGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSL 446
           I         +L  L ++ N+L  EI P L    SL  L I +N+I        +GL+++
Sbjct: 93  IHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNM 149

Query: 447 EIVDFSSNNL-SGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFM 505
             ++   N L +            L Y  I+  KL+  +P  L     +  +    NK  
Sbjct: 150 NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLPE--TLNELHLDHNKIQ 206

Query: 506 GFIPDAV--GM------DLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDGQVPGLYRLR 556
             I               L  N +   I  G    L  L  L+L  N L     GL  L+
Sbjct: 207 -AIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLK 264

Query: 557 SLRALDLSHNSLTGQIPGNI-------SSLQELTLLNLSYNSFSGF-VPWKQGYQKFPGA 608
            L+ + L  N++T ++  N                ++L  N    + V         P  
Sbjct: 265 LLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQ--------PAT 315

Query: 609 FAGNPNL 615
           F    + 
Sbjct: 316 FRCVTDR 322

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 96.6 bits (241), Expect = 6e-22
 Identities = 67/368 (18%), Positives = 126/368 (34%), Gaps = 57/368 (15%)

Query: 181 NLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGT 240
           +L+ L  ++++ C   P   +    L+ +      L     +      +L+L +N  S  
Sbjct: 15  DLDSLPPTYSAMC---PFGCH--CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDIS-E 68

Query: 241 LPCFA-ASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKL 299
           L          L  L L NN +        + L+ L  L +S NHL  EI P L     L
Sbjct: 69  LRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSL 125

Query: 300 LLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNL 359
           + L +  N +                     +    FSG        L+++  + +  N 
Sbjct: 126 VELRIHDNRIR-------------------KVPKGVFSG--------LRNMNCIEMGGNP 158

Query: 360 L-IGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPE-LD 417
           L          +   L  + +S   L+  IP ++      L L  ++N +   I+ E L 
Sbjct: 159 LENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLPETLNELHL--DHNKIQ-AIELEDLL 214

Query: 418 ALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIAR 477
               L  L + +NQI      +L+ L +L  +   +N LS  +   +     L+   +  
Sbjct: 215 RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHT 273

Query: 478 NKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLL-HGTIPKGLFQ-LQGL 535
           N ++            + + DF    F        G+ L +N + +  +    F+ +   
Sbjct: 274 NNIT-----------KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDR 322

Query: 536 EYLNLSFN 543
             +     
Sbjct: 323 LAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 96.2 bits (240), Expect = 8e-22
 Identities = 66/378 (17%), Positives = 121/378 (32%), Gaps = 76/378 (20%)

Query: 229 VLNLGSNRFSGTLPCFAASAMSLTVLKLDNN---SVVGGIPTCIASLQALTHLNLSHNHL 285
           + +L S   + +  C       L V++  +    +V   I          T L+L +N +
Sbjct: 13  IPDLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPKEISP------DTTLLDLQNNDI 66

Query: 286 NYEISPR-LVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI 344
           + E+        + L  L L  N +S  +  K      K  L  L +S N    EIP  +
Sbjct: 67  S-ELRKDDFKGLQHLYALVLVNNKISK-IHEKAFSPLRK--LQKLYISKNHLV-EIPPNL 121

Query: 345 TELKSLQALFLSNNLLIGEIPARI-GNLTYLQVIDLSHNML-SGSIPLNIVGCFQLLALI 402
               SL  L + +N  I ++P  +   L  +  I++  N L +           +L  L 
Sbjct: 122 --PSSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLR 178

Query: 403 VNNNNLSGEIQPELDALDSLKILDISNNQISGEIP-LTLAGLKSLEIVDFSSNNLSGSLN 461
           ++   L+  I    D  ++L  L + +N+I   I    L     L  +    N +    N
Sbjct: 179 ISEAKLT-GIPK--DLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIEN 234

Query: 462 DAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLL 521
            +++    L+   +  NKLS                                        
Sbjct: 235 GSLSFLPTLRELHLDNNKLS---------------------------------------- 254

Query: 522 HGTIPKGLFQLQGLEYLNLSFNFLD-------GQVPGLYRLRSLRALDLSHNSLTGQI-- 572
              +P GL  L+ L+ + L  N +          V    +      + L +N +      
Sbjct: 255 --RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQ 312

Query: 573 PGNISSLQELTLLNLSYN 590
           P     + +   +     
Sbjct: 313 PATFRCVTDRLAIQFGNY 330

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  104 bits (260), Expect = 7e-24
 Identities = 81/374 (21%), Positives = 127/374 (33%), Gaps = 39/374 (10%)

Query: 250 SLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVF--FEKLLLLDLSFN 307
            +  + L  NS+     T  + LQ L  L +        I     F     L++L L +N
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNN-TFRGLSSLIILKLDYN 89

Query: 308 DLSGPLPSKIAQTTEKAGLVLLDLSHNRF-SGEIPLKI-TELKSLQALFLSNNLLIGEIP 365
                L +          L +L L+        +       L SL+ L L +N +    P
Sbjct: 90  QFLQ-LETGAFNGLAN--LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP 146

Query: 366 ARI-GNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKI 424
           A    N+    V+DL+ N +  SI    +  FQ     +               L S+ +
Sbjct: 147 ASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLR-------------LSSITL 192

Query: 425 LDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNL 484
            D++   +  E         S+  +D S N    S+                    S N+
Sbjct: 193 QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNM 252

Query: 485 PNWLFSFQAIQMMDFSTNKFMGFIPDAV-GMDLSDNLLHGTIPKGLFQ-LQGLEYLNLSF 542
            +   SF      D     F G     V   DLS + +   + K +F     LE L L+ 
Sbjct: 253 GS---SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQ 308

Query: 543 NFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQG 601
           N ++       + L  L  L+LS N L         +L +L +L+LSYN     +     
Sbjct: 309 NEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA-LG---- 363

Query: 602 YQKFPGAFAGNPNL 615
                 +F G PNL
Sbjct: 364 ----DQSFLGLPNL 373

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  102 bits (255), Expect = 3e-23
 Identities = 80/422 (18%), Positives = 144/422 (34%), Gaps = 71/422 (16%)

Query: 108 LEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVP-DAIMKLRNLRELILKGNP- 165
           + ++ LS N+      T F  L  L+ L +       V+  +    L +L  L L  N  
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 166 -EL-GGVFPGWVGNFSMNLEKLDFSFNSFCGEI--PESLYYLKSLKHLDLEKNNLT---- 217
            +L  G F G       NLE L  +  +  G +        L SL+ L L  NN+     
Sbjct: 92  LQLETGAFNGLA-----NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP 146

Query: 218 GNVHDFYQSLLVLNLGSNRFSGTLPC---FAASAMSLTVLKLDNN--------SVVGGIP 266
            +     +   VL+L  N+   ++             T+L+L +          +     
Sbjct: 147 ASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205

Query: 267 TCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGL 326
                  ++T L+LS N      S    FF+ +    +    LS                
Sbjct: 206 GNPFKNTSITTLDLSGNGFK--ESMAKRFFDAIAGTKIQSLILSNS------------YN 251

Query: 327 VLLDLSHNRFSGEIPLKITELK--SLQALFLSNNLLIGEIPARI-GNLTYLQVIDLSHNM 383
           +     H  F          L+   ++   LS +  I  +   +  + T L+ + L+ N 
Sbjct: 252 MGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK-IFALLKSVFSHFTDLEQLTLAQNE 310

Query: 384 LSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGL 443
           ++  I       F                      L  L  L++S N +          L
Sbjct: 311 IN-KID---DNAF--------------------WGLTHLLKLNLSQNFLGSIDSRMFENL 346

Query: 444 KSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLF-SFQAIQMMDFSTN 502
             LE++D S N++    + +     NLK  ++  N+L  ++P+ +F    ++Q +   TN
Sbjct: 347 DKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405

Query: 503 KF 504
            +
Sbjct: 406 PW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 96.4 bits (240), Expect = 3e-21
 Identities = 75/393 (19%), Positives = 138/393 (35%), Gaps = 45/393 (11%)

Query: 205 SLKHLDLEKNNLT---GNVHDFYQSLLVLNLGSNRFSGTLPCFA-ASAMSLTVLKLDNNS 260
            + ++DL  N++           Q L  L +        +         SL +LKLD N 
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 261 VVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVF--FEKLLLLDLSFNDLSGPLPSKIA 318
            +         L  L  L L+  +L+  +     F     L +L L  N++    P+   
Sbjct: 91  FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150

Query: 319 QTTEKAGLVLLDLSHNRFS----------GEIPLKITELKSLQALFLSNNLLIGEIPARI 368
               +    +LDL+ N+                  +  L S+    ++   L  E     
Sbjct: 151 LNMRR--FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208

Query: 369 GNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDIS 428
              T +  +DLS N    S+       F  +A          +IQ  + +          
Sbjct: 209 FKNTSITTLDLSGNGFKESMAK---RFFDAIAGT--------KIQSLILSNSYNMGSSFG 257

Query: 429 NNQISGEIPLTLAGLK--SLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPN 486
           +         T  GL+   ++  D S + +   L    + +T+L+  ++A+N+++  + +
Sbjct: 258 HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDD 316

Query: 487 WLF-SFQAIQMMDFSTNKFMGFIPDAV--------GMDLSDNLLHGTIPKGLFQ-LQGLE 536
             F     +  ++ S N  +G I   +         +DLS N +   +    F  L  L+
Sbjct: 317 NAFWGLTHLLKLNLSQNF-LGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLK 374

Query: 537 YLNLSFNFLDGQVPGLY-RLRSLRALDLSHNSL 568
            L L  N L     G++ RL SL+ + L  N  
Sbjct: 375 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 22/112 (19%), Positives = 38/112 (33%), Gaps = 15/112 (13%)

Query: 509 PDAVGMDLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDGQVPG--LYRLRSLRALDLSH 565
                +DLS N +   + +  F  LQ L++L +        +       L SL  L L +
Sbjct: 30  AHVNYVDLSLNSI-AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88

Query: 566 NSLTGQIPGNI-SSLQELTLLNLSYNSF-SGFVPWKQGYQKFPGAFAGNPNL 615
           N    Q+     + L  L +L L+  +     +            F    +L
Sbjct: 89  NQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLS--------GNFFKPLTSL 131

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 31/164 (18%), Positives = 50/164 (30%), Gaps = 20/164 (12%)

Query: 16  KLQMLPLLLFLLLLCSNPSESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSNCTNWTGV 75
             +      F   +     +SL L+           +  +DP     ++ G   +     
Sbjct: 223 GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN--FTFKGLEASGVKTC 280

Query: 76  ACNF------------QTGHVVSINLTD---TSLSGQVHPRLCKLSFLEFLVLSSNAFTG 120
             +                 +  + L       +          L+ L  L LS N    
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNA---FWGLTHLLKLNLSQNFLGS 337

Query: 121 RISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
             S  F  L  L+ LDLSYN    +   + + L NL+EL L  N
Sbjct: 338 IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  101 bits (253), Expect = 9e-24
 Identities = 56/257 (21%), Positives = 109/257 (42%), Gaps = 18/257 (7%)

Query: 250 SLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFF--EKLLLLDLSFN 307
           S T L+L++N +          L  LT L+LS N L+++       F    L  LDLSFN
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 308 DLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI-TELKSLQALFLSNNLLIGEIPA 366
            +   + S      +   L  LD  H+         +   L++L  L +S+         
Sbjct: 89  GVIT-MSSNFLGLEQ---LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFN 143

Query: 367 RI-GNLTYLQVIDLSHNMLSGSIPLNI-VGCFQLLALIVNNNNLSGEIQPE-LDALDSLK 423
            I   L+ L+V+ ++ N    +   +I      L  L ++   L  ++ P   ++L SL+
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQ 202

Query: 424 ILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITK-WTNLKYFSIARNKLS- 481
           +L++S+N            L SL+++D+S N++  S    +    ++L + ++ +N  + 
Sbjct: 203 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262

Query: 482 ----GNLPNWLFSFQAI 494
                +   W+   + +
Sbjct: 263 TCEHQSFLQWIKDQRQL 279

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 94.7 bits (236), Expect = 2e-21
 Identities = 69/287 (24%), Positives = 102/287 (35%), Gaps = 64/287 (22%)

Query: 108 LEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNK--FVGVVPDAIMKLRNLRELILKGNP 165
              L L SN         F  L+ L  L LS N   F G    +     +L+ L L  N 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 166 --ELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPES--LYYLKSLKHLDLEKNNLTGNVH 221
              +   F G        LE LDF  ++   ++ E      L++L +LD+   +      
Sbjct: 90  VITMSSNFLG-----LEQLEHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTHTR---- 139

Query: 222 DFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCI-ASLQALTHLNL 280
                       +  F+G L        SL VLK+  NS        I   L+ LT L+L
Sbjct: 140 ---------VAFNGIFNG-LS-------SLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182

Query: 281 SHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEI 340
           S   L  ++SP             +FN LS               L +L++SHN F    
Sbjct: 183 SQCQLE-QLSPT------------AFNSLS--------------SLQVLNMSHNNFFSLD 215

Query: 341 PLKITELKSLQALFLSNNLLIGEIPARI--GNLTYLQVIDLSHNMLS 385
                 L SLQ L  S N ++     +      + L  ++L+ N  +
Sbjct: 216 TFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 92.8 bits (231), Expect = 8e-21
 Identities = 61/278 (21%), Positives = 101/278 (36%), Gaps = 52/278 (18%)

Query: 324 AGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLL-IGEIPARI-GNLTYLQVIDLSH 381
           +    L+L  N+          +L  L  L LS+N L      ++     T L+ +DLS 
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 382 NMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPE--LDALDSLKILDISNNQISGEIPLT 439
           N +  ++  N +G  QL  L   ++NL  ++       +L +L  LDIS+          
Sbjct: 88  NGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145

Query: 440 LAGLKSLEIVDFSSNNLSGSLN-DAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMD 498
             GL SLE++  + N+   +   D  T+  NL +  +++ +L                  
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE----------------- 188

Query: 499 FSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDGQVPGLYR-LR 556
                                     +    F  L  L+ LN+S N         Y+ L 
Sbjct: 189 -------------------------QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 223

Query: 557 SLRALDLSHNSLTGQIPGNISSLQE-LTLLNLSYNSFS 593
           SL+ LD S N +       +      L  LNL+ N F+
Sbjct: 224 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 91.6 bits (228), Expect = 2e-20
 Identities = 56/270 (20%), Positives = 91/270 (33%), Gaps = 50/270 (18%)

Query: 329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARI-GNLTYLQVIDLSHNMLSGS 387
           +  +    +  +P  I    S   L L +N  +  +P  +   LT L  + LS N LS  
Sbjct: 12  IRCNSKGLT-SVPTGI--PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLS-F 66

Query: 388 IPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLE 447
                                            SLK LD+S N +   +     GL+ LE
Sbjct: 67  KGCC---------------------SQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLE 104

Query: 448 IVDFSSNNLSG-SLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMG 506
            +DF  +NL   S         NL Y  I+                +++++         
Sbjct: 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK-------- 156

Query: 507 FIPDAVGMDLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDGQVPG--LYRLRSLRALDL 563
                    ++ N         +F  L+ L +L+LS   L+ Q+       L SL+ L++
Sbjct: 157 ---------MAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNM 206

Query: 564 SHNSLTGQIPGNISSLQELTLLNLSYNSFS 593
           SHN+           L  L +L+ S N   
Sbjct: 207 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 72.7 bits (179), Expect = 4e-14
 Identities = 38/163 (23%), Positives = 51/163 (31%), Gaps = 10/163 (6%)

Query: 104 KLSFLEFLVLSSNAFTGRISTC-FGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILK 162
            L  LE L    +          F  L  L  LD+S+             L +L  L + 
Sbjct: 99  GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 158

Query: 163 GNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPE-SLYYLKSLKHLDLEKNNLTG--- 218
           GN       P        NL  LD S      ++   +   L SL+ L++  NN      
Sbjct: 159 GNSFQENFLPDIFTELR-NLTFLDLSQCQL-EQLSPTAFNSLSSLQVLNMSHNNFFSLDT 216

Query: 219 NVHDFYQSLLVLNLGSNRFSGTLP--CFAASAMSLTVLKLDNN 259
             +    SL VL+   N    T           SL  L L  N
Sbjct: 217 FPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 63.1 bits (154), Expect = 6e-11
 Identities = 40/199 (20%), Positives = 64/199 (32%), Gaps = 54/199 (27%)

Query: 421 SLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLS--GSLNDAITKWTNLKYFSIARN 478
           S   L++ +N++          L  L  +  SSN LS  G  + +    T+LKY  ++ N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 479 KLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYL 538
            +                                           T+      L+ LE+L
Sbjct: 89  GVI------------------------------------------TMSSNFLGLEQLEHL 106

Query: 539 NLSFNFLD--GQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFV 596
           +   + L    +      LR+L  LD+SH        G  + L  L +L ++ NSF    
Sbjct: 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166

Query: 597 PWKQGYQKFPGAFAGNPNL 615
                    P  F    NL
Sbjct: 167 L--------PDIFTELRNL 177

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  100 bits (249), Expect = 4e-22
 Identities = 61/316 (19%), Positives = 108/316 (34%), Gaps = 36/316 (11%)

Query: 195 EIPESLYYLKSLKHLDLEKNNLTGNVHD-FYQSLLVLNLGSNRFSGTLPCFAASAMSLTV 253
           +   +    +        +N     + +        L L     S +LP        +TV
Sbjct: 28  DYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS-SLPDNLPP--QITV 84

Query: 254 LKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPL 313
           L++  N+++  +P   ASL+   +L+   N L+  +         L  LD+  N L+  L
Sbjct: 85  LEITQNALIS-LPELPASLE---YLDACDNRLS-TLPELP---ASLKHLDVDNNQLTM-L 135

Query: 314 PSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTY 373
           P   A       L  ++  +N+ +  +P       SL+ L + NN L   +P    +L  
Sbjct: 136 PELPAL------LEYINADNNQLT-MLP---ELPTSLEVLSVRNNQL-TFLPELPESLEA 184

Query: 374 LQVIDLSHNMLSGSIPLNIVGCFQL----LALIVNNNNLSGEIQPELDALDSLKILDISN 429
           L   D+S N+L  S+P   V         +      N ++  I   + +LD    + + +
Sbjct: 185 L---DVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILED 239

Query: 430 NQISGEIPLTLAGLKSLEIVDFSSNNLS---GSLNDAITKWTNLKYFSIARNKLSGNLPN 486
           N +S  I  +L+   +           S   G  N       +        NK S     
Sbjct: 240 NPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQI 299

Query: 487 WLFSFQAIQMMDFSTN 502
           W           FS  
Sbjct: 300 WHAFEHEEHANTFSAF 315

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 99.3 bits (247), Expect = 7e-22
 Identities = 60/299 (20%), Positives = 109/299 (36%), Gaps = 49/299 (16%)

Query: 300 LLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNL 359
           L  +  +N +SG      +   +     L   + N     +      +     L L+   
Sbjct: 13  LSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLK--ECLINQFSELQLNRLN 70

Query: 360 LIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPEL-DA 418
           L   +P  +     + V++++ N L  S+P        L  L   +N LS      L + 
Sbjct: 71  L-SSLPDNLP--PQITVLEITQNALI-SLPELPA---SLEYLDACDNRLS-----TLPEL 118

Query: 419 LDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARN 478
             SLK LD+ NNQ++  +P   A L+ +   +  +N L+  L +  T   +L+  S+  N
Sbjct: 119 PASLKHLDVDNNQLT-MLPELPALLEYI---NADNNQLT-MLPELPT---SLEVLSVRNN 170

Query: 479 KLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLE-- 536
           +L+  LP    S +A+                    D+S NLL  ++P    +    E  
Sbjct: 171 QLTF-LPELPESLEAL--------------------DVSTNLLE-SLPAVPVRNHHSEET 208

Query: 537 --YLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFS 593
             +     N +      +  L     + L  N L+ +I  ++S        +     FS
Sbjct: 209 EIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 97.3 bits (242), Expect = 2e-21
 Identities = 63/335 (18%), Positives = 106/335 (31%), Gaps = 36/335 (10%)

Query: 134 TLDLSYNKFVGVVPDAIMKLRNLRELILKGNP--ELGGVFPGWVGNFSMNLEKLDFSFNS 191
           + +  YN   G   D         +  L G    E   +    + N      +L  +  +
Sbjct: 14  SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN---QFSELQLNRLN 70

Query: 192 FCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSL 251
               +P++L     +  L++ +N L  ++ +   SL  L+   NR S TLP       SL
Sbjct: 71  LS-SLPDNL--PPQITVLEITQNALI-SLPELPASLEYLDACDNRLS-TLP---ELPASL 122

Query: 252 TVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSG 311
             L +DNN +   +P   A L+   ++N  +N L   +         L +L +  N L+ 
Sbjct: 123 KHLDVDNNQLTM-LPELPALLE---YINADNNQLT-MLPELP---TSLEVLSVRNNQLTF 174

Query: 312 PLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQ----ALFLSNNLLIGEIPAR 367
            LP           L  LD+S N     +P         +          N  I  IP  
Sbjct: 175 -LPELPES------LEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENR-ITHIPEN 225

Query: 368 IGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDI 427
           I +L     I L  N LS S     +                  +           + D 
Sbjct: 226 ILSLDPTCTIILEDNPLS-SRIRESLSQQTAQPDYHGPRIYF-SMSDGQQNTLHRPLADA 283

Query: 428 SNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLND 462
                       ++ +      +  +N  S  L+ 
Sbjct: 284 VTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDR 318

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 97.0 bits (241), Expect = 4e-21
 Identities = 52/309 (16%), Positives = 103/309 (33%), Gaps = 68/309 (22%)

Query: 269 IASLQALTHLNLSHNHLNYEIS-PRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLV 327
            ++        L   + N  +S  +     +   L L+  +LS  LP  +        + 
Sbjct: 30  FSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSS-LPDNLPP-----QIT 83

Query: 328 LLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGS 387
           +L+++ N     +P       SL+ L   +N L   +P    +L +L   D+ +N L+  
Sbjct: 84  VLEITQNALI-SLP---ELPASLEYLDACDNRLS-TLPELPASLKHL---DVDNNQLT-M 134

Query: 388 IPLNIVGCFQLLALIVNNNNLSGEIQPEL-DALDSLKILDISNNQISGEIPLTLAGLKSL 446
           +P        L  +  +NN L+      L +   SL++L + NNQ++  +P     L++L
Sbjct: 135 LPELPA---LLEYINADNNQLT-----MLPELPTSLEVLSVRNNQLT-FLPELPESLEAL 185

Query: 447 EIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMG 506
              D S+N L  SL     +  + +               +                   
Sbjct: 186 ---DVSTNLLE-SLPAVPVRNHHSE-----------ETEIFF------------------ 212

Query: 507 FIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHN 566
                      +N +   IP+ +  L     + L  N L  ++      ++ +       
Sbjct: 213 --------RCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPR 263

Query: 567 SLTGQIPGN 575
                  G 
Sbjct: 264 IYFSMSDGQ 272

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 82.7 bits (204), Expect = 1e-16
 Identities = 58/321 (18%), Positives = 97/321 (30%), Gaps = 75/321 (23%)

Query: 100 PRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLREL 159
            + C ++    L L+    +  +         +  L+++ N               L  L
Sbjct: 53  LKECLINQFSELQLNRLNLS-SLPDNLP--PQITVLEITQNA--------------LISL 95

Query: 160 ILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGN 219
                PEL             +LE LD   N     +PE      SLKHLD++ N LT  
Sbjct: 96  -----PELPA-----------SLEYLDACDNRL-STLPEL---PASLKHLDVDNNQLT-M 134

Query: 220 VHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLN 279
           + +    L  +N  +N+ +  LP                               +L  L+
Sbjct: 135 LPELPALLEYINADNNQLT-MLP---------------------------ELPTSLEVLS 166

Query: 280 LSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTE-KAGLVLLDLSHNRFSG 338
           + +N L   +       E L  LD+S N L   LP+   +    +   +      NR + 
Sbjct: 167 VRNNQLT-FLPELP---ESLEALDVSTNLLES-LPAVPVRNHHSEETEIFFRCRENRIT- 220

Query: 339 EIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQL 398
            IP  I  L     + L +N L   I   +   T     D     +  S+          
Sbjct: 221 HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQP--DYHGPRIYFSMSDGQQNTLHR 278

Query: 399 LALIVNNNNLSGEIQPELDAL 419
                         Q ++  +
Sbjct: 279 PLADAVTAWFPENKQSDVSQI 299

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 97.5 bits (243), Expect = 9e-22
 Identities = 58/233 (24%), Positives = 94/233 (40%), Gaps = 12/233 (5%)

Query: 250 SLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPR-LVFFEKLLLLDLSFND 308
           +  +L L  N +          L+ L  L LS NH+   I          L  L+L  N 
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNR 123

Query: 309 LSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI-TELKSLQALFLSNNLLIGEIPAR 367
           L+  +P+       K  L  L L +N     IP      + SL+ L L     +  I   
Sbjct: 124 LTT-IPNGAFVYLSK--LKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEG 179

Query: 368 I-GNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPE-LDALDSLKIL 425
               L+ L+ ++L+   L   IP N+    +L  L ++ N+LS  I+P     L  L+ L
Sbjct: 180 AFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKL 236

Query: 426 DISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARN 478
            +  +QI          L+SL  ++ + NNL+   +D  T   +L+   +  N
Sbjct: 237 WMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 92.9 bits (231), Expect = 3e-20
 Identities = 63/271 (23%), Positives = 107/271 (39%), Gaps = 34/271 (12%)

Query: 329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARI-GNLTYLQVIDLSHNMLSGS 387
           +         E+P  I+   + + L L  N  I  I      +L +L+++ LS N +  +
Sbjct: 48  VICVRKNLR-EVPDGIST--NTRLLNLHENQ-IQIIKVNSFKHLRHLEILQLSRNHIR-T 102

Query: 388 IPLNI-VGCFQLLALIVNNNNLSGEIQPE-LDALDSLKILDISNNQISGEIPL-TLAGLK 444
           I +    G   L  L + +N L+  I       L  LK L + NN I   IP      + 
Sbjct: 103 IEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIP 160

Query: 445 SLEIVDFSSNNLSGSL-NDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNK 503
           SL  +D         +   A    +NL+Y ++A   L   +P            + +   
Sbjct: 161 SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP------------NLTPLI 207

Query: 504 FMGFIPDAVGMDLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDGQVPGLYR-LRSLRAL 561
            +  +      DLS N L   I  G FQ L  L+ L +  + +       +  L+SL  +
Sbjct: 208 KLDEL------DLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEI 260

Query: 562 DLSHNSLTGQIPGNISSLQELTLLNLSYNSF 592
           +L+HN+LT       + L  L  ++L +N +
Sbjct: 261 NLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 90.6 bits (225), Expect = 2e-19
 Identities = 62/284 (21%), Positives = 96/284 (33%), Gaps = 57/284 (20%)

Query: 177 NFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNR 236
             S N   L+   N        S  +L+ L+ L L +N++               +    
Sbjct: 61  GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-------------TIEIGA 107

Query: 237 FSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRL-VF 295
           F+G L        +L  L+L +N +          L  L  L L +N +   I       
Sbjct: 108 FNG-LA-------NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNR 158

Query: 296 FEKLLLLDLS-FNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALF 354
              L  LDL     LS                    +S   F G        L +L+ L 
Sbjct: 159 IPSLRRLDLGELKRLS-------------------YISEGAFEG--------LSNLRYLN 191

Query: 355 LSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNI-VGCFQLLALIVNNNNLSGEIQ 413
           L+   L  EIP  +  L  L  +DLS N LS +I      G   L  L +  + +   I+
Sbjct: 192 LAMCNLR-EIPN-LTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQ-VIE 247

Query: 414 PE-LDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNL 456
               D L SL  +++++N ++         L  LE +    N  
Sbjct: 248 RNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 89.0 bits (221), Expect = 6e-19
 Identities = 58/257 (22%), Positives = 87/257 (33%), Gaps = 39/257 (15%)

Query: 108 LEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPEL 167
              L L  N         F  L  L+ L LS N    +   A   L NL  L L  N  L
Sbjct: 66  TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RL 124

Query: 168 GGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESL-YYLKSLKHLDLEKNNLTGNVHD--FY 224
             +  G     S  L++L    N     IP      + SL+ LDL +      + +  F 
Sbjct: 125 TTIPNGAFVYLS-KLKELWLRNNPI-ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE 182

Query: 225 --QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSH 282
              +L  LNL        +P      + L  L L  N +    P     L  L  L +  
Sbjct: 183 GLSNLRYLNLAMCNLR-EIPNL-TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ 240

Query: 283 NHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPL 342
           + +   I               +F++L                LV ++L+HN  +  +P 
Sbjct: 241 SQIQV-IERN------------AFDNLQ--------------SLVEINLAHNNLT-LLPH 272

Query: 343 KI-TELKSLQALFLSNN 358
            + T L  L+ + L +N
Sbjct: 273 DLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 89.0 bits (221), Expect = 7e-19
 Identities = 59/244 (24%), Positives = 92/244 (37%), Gaps = 33/244 (13%)

Query: 374 LQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPE-LDALDSLKILDISNNQI 432
              +      L   +P  I    +LL L  + N +   I+      L  L+IL +S N I
Sbjct: 45  FSKVICVRKNLR-EVPDGISTNTRLLNL--HENQIQ-IIKVNSFKHLRHLEILQLSRNHI 100

Query: 433 SGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQ 492
                    GL +L  ++   N L+   N A    + LK   +  N +  ++P++ F+  
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNR- 158

Query: 493 AIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDGQVPG 551
                          IP    +DL +      I +G F+ L  L YLNL+   L  ++P 
Sbjct: 159 ---------------IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN 202

Query: 552 LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAG 611
           L  L  L  LDLS N L+   PG+   L  L  L +  +     +           AF  
Sbjct: 203 LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIE--------RNAFDN 253

Query: 612 NPNL 615
             +L
Sbjct: 254 LQSL 257

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 12/98 (12%)

Query: 100 PRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLREL 159
           P L  L  L+ L LS N  +      F GL  L+ L +  ++   +  +A   L++L E+
Sbjct: 201 PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEI 260

Query: 160 ILKGN-----PELGGVFPGWVGNFSMNLEKLDFSFNSF 192
            L  N     P    +F         +LE++    N +
Sbjct: 261 NLAHNNLTLLPH--DLFTPLH-----HLERIHLHHNPW 291

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 92.3 bits (229), Expect = 1e-20
 Identities = 52/273 (19%), Positives = 88/273 (32%), Gaps = 36/273 (13%)

Query: 314 PSKIAQTTEKAGLVLLDLSHNRFSGEIP---LKITELKSLQALFLSNNLLIGEIPARIGN 370
             +     +   L  L +   R    I    L++  +  LQ L L N  + G  P  +  
Sbjct: 58  LGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117

Query: 371 LTYLQVIDLSHNMLSGSIPLNIVGCFQ------LLALIVNNNNLSGEIQPELDALDSLKI 424
            T   +  L+   +S +     +   Q      L  L +   +       ++    +L  
Sbjct: 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALST 177

Query: 425 LDISNNQISGEIPLTLA----GLKSLEIVDFSSNN---LSGSLNDAITKWTNLKYFSIAR 477
           LD+S+N   GE  L  A       +L+++   +      SG  +        L+   ++ 
Sbjct: 178 LDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSH 237

Query: 478 NKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEY 537
           N L          +                      ++LS   L   +PKGL     L  
Sbjct: 238 NSLRDAAGAPSCDWP----------------SQLNSLNLSFTGLK-QVPKGLPA--KLSV 278

Query: 538 LNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTG 570
           L+LS+N LD   P    L  +  L L  N    
Sbjct: 279 LDLSYNRLDR-NPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 89.2 bits (221), Expect = 1e-19
 Identities = 55/281 (19%), Positives = 90/281 (32%), Gaps = 32/281 (11%)

Query: 328 LLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPA---RIGNLTYLQVIDLSHNML 384
           LL              I +  SL+ L +    +   I     R+  ++ LQ + L +  +
Sbjct: 48  LLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEV 107

Query: 385 SGSIPLNIVGCF--QLLALIVNNNNLSGEIQPELDALD----SLKILDISNNQISGEIPL 438
           +G+ P  ++      L  L + N + +       +        LK+L I+          
Sbjct: 108 TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCE 167

Query: 439 TLAGLKSLEIVDFSSNNLSGSLNDAIT----KWTNLKYFSIARNKLSGNLPNWLFSFQAI 494
            +    +L  +D S N   G           K+  L+  ++    +            A 
Sbjct: 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR 227

Query: 495 QMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDGQVPGLY 553
             +                +DLS N L              L  LNLSF  L     GL 
Sbjct: 228 VQLQG--------------LDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL- 272

Query: 554 RLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSG 594
               L  LDLS+N L    P +   L ++  L+L  N F  
Sbjct: 273 -PAKLSVLDLSYNRLDR-NP-SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 85.7 bits (212), Expect = 2e-18
 Identities = 66/304 (21%), Positives = 100/304 (32%), Gaps = 29/304 (9%)

Query: 177 NFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDF----YQSLLVLNL 232
           NFS        +FN       E     +SL++L    +               SL  L +
Sbjct: 16  NFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTV 75

Query: 233 GSNRFSGTLPCFAASAMS---LTVLKLDNNSVVGGIPTCIASLQ--ALTHLNLSHNHLNY 287
            + R    +   A   +    L  L L+N  V G  P  +       L  LNL +     
Sbjct: 76  RAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT 135

Query: 288 EISPRLVFFEKLLL----LDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLK 343
             +      + L      L ++          ++        L  LDLS N   GE  L 
Sbjct: 136 RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA---LSTLDLSDNPELGERGLI 192

Query: 344 IT----ELKSLQALFLSNNL---LIGEIPARIGNLTYLQVIDLSHNMLSGSIP-LNIVGC 395
                 +  +LQ L L N       G   A       LQ +DLSHN L  +    +    
Sbjct: 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252

Query: 396 FQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNN 455
            QL +L ++   L  ++   L A   L +LD+S N++    P     L  +  +    N 
Sbjct: 253 SQLNSLNLSFTGLK-QVPKGLPA--KLSVLDLSYNRLD-RNPSPD-ELPQVGNLSLKGNP 307

Query: 456 LSGS 459
              S
Sbjct: 308 FLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 84.6 bits (209), Expect = 5e-18
 Identities = 53/280 (18%), Positives = 87/280 (31%), Gaps = 25/280 (8%)

Query: 126 FGGLSGLKTLDLSYNKFVGVVPDA-IMKLRNLRELILKGNPELGGVFPGWVGNFSM-NLE 183
           +GG   L+ L    +    +     I+K  +L+ L ++       +  G +    +  L+
Sbjct: 39  YGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98

Query: 184 KLDFSFNSFCGEIPESL--YYLKSLKHLDLEKNNLTGNVHDFYQ-------SLLVLNLGS 234
           +L        G  P  L       L  L+L   +         +        L VL++  
Sbjct: 99  ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ 158

Query: 235 NRFSGTLPCFAASAMSLTVLKLDNNSVVGGIP----TCIASLQALTHLNLSHNHLN---Y 287
                          +L+ L L +N  +G        C      L  L L +  +     
Sbjct: 159 AHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG 218

Query: 288 EISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITEL 347
             S       +L  LDLS N L     +       +  L  L+LS      ++P  +   
Sbjct: 219 VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ--LNSLNLSFTGLK-QVPKGL--P 273

Query: 348 KSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGS 387
             L  L LS N L    P     L  +  + L  N    S
Sbjct: 274 AKLSVLDLSYNRL-DRNP-SPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 79.2 bits (195), Expect = 3e-16
 Identities = 51/266 (19%), Positives = 88/266 (33%), Gaps = 28/266 (10%)

Query: 355 LSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQP 414
             N L   ++    G  +   ++             +I+    L  L V    +   I  
Sbjct: 27  AFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILF 86

Query: 415 ELDALDS---LKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAIT------ 465
               +     L+ L + N +++G  P  L      ++   +  N+S +  DA        
Sbjct: 87  GALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQW 146

Query: 466 KWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFI-----------PDAVGM 514
               LK  SIA+          +  F A+  +D S N  +G             P    +
Sbjct: 147 LKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVL 206

Query: 515 DLSDNLLH---GTIPKGLFQLQGLEYLNLSFNFLDGQVPGL--YRLRSLRALDLSHNSLT 569
            L +  +    G           L+ L+LS N L              L +L+LS   L 
Sbjct: 207 ALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

Query: 570 GQIPGNISSLQELTLLNLSYNSFSGF 595
            Q+P  +    +L++L+LSYN     
Sbjct: 267 -QVPKGLP--AKLSVLDLSYNRLDRN 289

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 70.3 bits (172), Expect = 3e-13
 Identities = 45/218 (20%), Positives = 72/218 (33%), Gaps = 20/218 (9%)

Query: 83  HVVSINLTDTSLSGQVHPRLCKLSF--LEFLVLSSNAFTGRIS----TCFGGLSGLKTLD 136
            +  + L +  ++G   P L + +   L  L L + ++  R +           GLK L 
Sbjct: 96  GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLS 155

Query: 137 LSYNKFVGVVPDAIMKLRNLRELILKGNPELG--GVFPGWVGNFSMNLEKLDFSFNSFC- 193
           ++    +    + +     L  L L  NPELG  G+           L+ L         
Sbjct: 156 IAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET 215

Query: 194 --GEIPESLYYLKSLKHLDLEKNNLTGNVHD----FYQSLLVLNLGSNRFSGTLPCFAAS 247
             G           L+ LDL  N+L          +   L  LNL             A 
Sbjct: 216 PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPA- 274

Query: 248 AMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHL 285
              L+VL L  N  +   P+    L  + +L+L  N  
Sbjct: 275 --KLSVLDLSYNR-LDRNPS-PDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 66.8 bits (163), Expect = 4e-12
 Identities = 35/243 (14%), Positives = 79/243 (32%), Gaps = 28/243 (11%)

Query: 370 NLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKI--LDI 427
           N +  +    S     G+  + + G  + L  ++   +   ++    D + SL +  L +
Sbjct: 16  NFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTV 75

Query: 428 SNNQISGEIP---LTLAGLKSLEIVDFSSNNLSGS--LNDAITKWTNLKYFSIARNKLSG 482
              +I   I    L + G+  L+ +   +  ++G+           +L   ++     + 
Sbjct: 76  RAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT 135

Query: 483 NLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSF 542
               WL   Q                       ++         + +     L  L+LS 
Sbjct: 136 -RDAWLAELQQWLKPGLKVL------------SIAQAHSLNFSCEQVRVFPALSTLDLSD 182

Query: 543 NFLDGQVP-----GLYRLRSLRALDLSHN---SLTGQIPGNISSLQELTLLNLSYNSFSG 594
           N   G+          +  +L+ L L +    + +G      ++  +L  L+LS+NS   
Sbjct: 183 NPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD 242

Query: 595 FVP 597
              
Sbjct: 243 AAG 245

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.1 bits (148), Expect = 3e-10
 Identities = 48/252 (19%), Positives = 81/252 (32%), Gaps = 18/252 (7%)

Query: 2   ELKRDLNVHSCRALKLQMLPLLLFLLLLCSNPSESLELNLED-KASLLLFKSLVQDPTQK 60
           ++ + L++        ++   +LF  L     S   EL LE+ + +      L++     
Sbjct: 63  DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPD 122

Query: 61  LSSWVGSNCT-----NWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSS 115
           L+     N +      W      +    +  +++           ++     L  L LS 
Sbjct: 123 LNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSD 182

Query: 116 NAFTGRI----STCFGGLSGLKTLDLSYNKF---VGVVPDAIMKLRNLRELILKGNPELG 168
           N   G      + C      L+ L L         GV          L+ L L  N  L 
Sbjct: 183 NPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN-SLR 241

Query: 169 GVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGN-VHDFYQSL 227
                   ++   L  L+ SF     ++P+ L     L  LDL  N L  N   D    +
Sbjct: 242 DAAGAPSCDWPSQLNSLNLSFTGL-KQVPKGL--PAKLSVLDLSYNRLDRNPSPDELPQV 298

Query: 228 LVLNLGSNRFSG 239
             L+L  N F  
Sbjct: 299 GNLSLKGNPFLD 310

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 94.0 bits (234), Expect = 1e-20
 Identities = 61/273 (22%), Positives = 106/273 (38%), Gaps = 38/273 (13%)

Query: 329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARI-GNLTYLQVIDLSHNMLSGS 387
           +  +    S E+P  I    + + L L  N  I  I A    +L +L+V+ L  N +   
Sbjct: 59  VVCTRRGLS-EVPQGI--PSNTRYLNLMENN-IQMIQADTFRHLHHLEVLQLGRNSIR-Q 113

Query: 388 IPLNI-VGCFQLLALIVNNNNLSGEIQPE-LDALDSLKILDISNNQISGEIPLTLAGLKS 445
           I +    G   L  L + +N L+  I     + L  L+ L + NN I          + S
Sbjct: 114 IEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPS 172

Query: 446 LEIVDFSSNNLSGSL-NDAITKWTNLKYFSIARNKLSGNLPNW--LFSFQAIQMMDFSTN 502
           L  +D         +   A     NLKY ++    +  ++PN   L   + +        
Sbjct: 173 LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLTPLVGLEEL-------- 223

Query: 503 KFMGFIPDAVGMDLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDGQVPG-LYRLRSLRA 560
                       ++S N     I  G F  L  L+ L +  + +          L SL  
Sbjct: 224 ------------EMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVE 270

Query: 561 LDLSHNSLTGQIPGNI-SSLQELTLLNLSYNSF 592
           L+L+HN+L+  +P ++ + L+ L  L+L +N +
Sbjct: 271 LNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 93.7 bits (233), Expect = 2e-20
 Identities = 57/257 (22%), Positives = 91/257 (35%), Gaps = 14/257 (5%)

Query: 205 SLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAM-SLTVLKLDNNSVVG 263
               +   +  L+        +   LNL  N     +       +  L VL+L  NS+  
Sbjct: 55  QFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQ 113

Query: 264 GIPTCIASLQALTHLNLSHNHLNYEISPR-LVFFEKLLLLDLSFNDLSGPLPSKIAQTTE 322
                   L +L  L L  N L   I      +  KL  L L  N +   +PS       
Sbjct: 114 IEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIES-IPSYAFNRVP 171

Query: 323 KAGLVLLDLSHNRFSGEIPLKI-TELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSH 381
              L+ LDL   +    I       L +L+ L L    +  ++P  +  L  L+ +++S 
Sbjct: 172 S--LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSG 227

Query: 382 NMLSGSIPLN-IVGCFQLLALIVNNNNLSGEIQPE-LDALDSLKILDISNNQISGEIPLT 439
           N     I      G   L  L V N+ +S  I+    D L SL  L++++N +S      
Sbjct: 228 NHFP-EIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDL 285

Query: 440 LAGLKSLEIVDFSSNNL 456
              L+ L  +    N  
Sbjct: 286 FTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 87.9 bits (218), Expect = 1e-18
 Identities = 60/280 (21%), Positives = 89/280 (31%), Gaps = 57/280 (20%)

Query: 108 LEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPEL 167
             +L L  N      +  F  L  L+ L L  N    +   A   L +L  L L  N   
Sbjct: 77  TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN--- 133

Query: 168 GGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSL 227
                         L  +             +  YL  L+ L L  N +           
Sbjct: 134 -------------WLTVIP----------SGAFEYLSKLRELWLRNNPIE---------- 160

Query: 228 LVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCI-ASLQALTHLNLSHNHLN 286
              ++ S  F+  +P       SL  L L     +  I       L  L +LNL   ++ 
Sbjct: 161 ---SIPSYAFNR-VP-------SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209

Query: 287 YEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLK-IT 345
               P L     L  L++S N      P      +    L  L + +++ S  I      
Sbjct: 210 DM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSS---LKKLWVMNSQVS-LIERNAFD 263

Query: 346 ELKSLQALFLSNNLLIGEIPARI-GNLTYLQVIDLSHNML 384
            L SL  L L++N L   +P  +   L YL  + L HN  
Sbjct: 264 GLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 87.5 bits (217), Expect = 2e-18
 Identities = 60/257 (23%), Positives = 96/257 (37%), Gaps = 36/257 (14%)

Query: 250 SLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDL 309
           +   L L  N++          L  L  L L  N +  +I               +FN L
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVG------------AFNGL 122

Query: 310 SGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI-TELKSLQALFLSNNLLIGEIPARI 368
           +               L  L+L  N  +  IP      L  L+ L+L NN  I  IP+  
Sbjct: 123 AS--------------LNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNP-IESIPSYA 166

Query: 369 -GNLTYLQVIDLSHNMLSGSIPLNI-VGCFQLLALIVNNNNLSGEIQPELDALDSLKILD 426
              +  L  +DL        I      G F L  L +   N+  ++ P L  L  L+ L+
Sbjct: 167 FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DM-PNLTPLVGLEELE 224

Query: 427 ISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPN 486
           +S N      P +  GL SL+ +   ++ +S    +A     +L   ++A N LS +LP+
Sbjct: 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPH 283

Query: 487 WLF-SFQAIQMMDFSTN 502
            LF   + +  +    N
Sbjct: 284 DLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 56.7 bits (137), Expect = 1e-08
 Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 6/113 (5%)

Query: 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
           L  L++L L        +      L GL+ L++S N F  + P +   L +L++L +  +
Sbjct: 195 LFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS 252

Query: 165 PELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYY-LKSLKHLDLEKNNL 216
            ++  +        + +L +L+ + N+    +P  L+  L+ L  L L  N  
Sbjct: 253 -QVSLIERNAFDGLA-SLVELNLAHNNL-SSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 51.3 bits (123), Expect = 7e-07
 Identities = 28/96 (29%), Positives = 38/96 (39%), Gaps = 8/96 (8%)

Query: 100 PRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLREL 159
           P L  L  LE L +S N F       F GLS LK L +  ++   +  +A   L +L EL
Sbjct: 212 PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL 271

Query: 160 ILKGNP--EL-GGVFPGWVGNFSMNLEKLDFSFNSF 192
            L  N    L   +F          L +L    N +
Sbjct: 272 NLAHNNLSSLPHDLFTPLR-----YLVELHLHHNPW 302

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 91.3 bits (226), Expect = 3e-19
 Identities = 50/267 (18%), Positives = 94/267 (35%), Gaps = 56/267 (20%)

Query: 326 LVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLS 385
            +  +L     +  +     EL S+  +  +N+  I  +   I  L  +  + L+ N L+
Sbjct: 23  TIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSD-IKSVQG-IQYLPNVTKLFLNGNKLT 78

Query: 386 GSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKS 445
             I   +     L  L ++ N +  ++   L  L  LK L + +N IS +I   L  L  
Sbjct: 79  -DIK-PLTNLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHNGIS-DIN-GLVHLPQ 132

Query: 446 LEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFM 505
           LE +   +N ++      +++ T L   S+  N++S                        
Sbjct: 133 LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS------------------------ 166

Query: 506 GFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSH 565
                    D+            L  L  L+ L LS N +   +  L  L++L  L+L  
Sbjct: 167 ---------DIV----------PLAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELFS 206

Query: 566 NSLTGQIPGNISSLQELTLLNLSYNSF 592
                +   + S+L     +  +  S 
Sbjct: 207 QECLNKPINHQSNLVVPNTVKNTDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 79.0 bits (194), Expect = 2e-15
 Identities = 62/398 (15%), Positives = 122/398 (30%), Gaps = 53/398 (13%)

Query: 108 LEFLVLSSNAFTGRISTCFG--GLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNP 165
           +   +  S      I   F     +     +L        V     +L ++ ++I   + 
Sbjct: 1   MGETITVST----PIKQIFPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNS- 53

Query: 166 ELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQ 225
                          +++ +            + + YL ++  L L  N LT ++     
Sbjct: 54  ---------------DIKSV------------QGIQYLPNVTKLFLNGNKLT-DIKPLTN 85

Query: 226 --SLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHN 283
             +L  L L  N+    L         L  L L++N +       +  L  L  L L +N
Sbjct: 86  LKNLGWLFLDENKIK-DLSSLKDLK-KLKSLSLEHNGIS--DINGLVHLPQLESLYLGNN 141

Query: 284 HLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLK 343
            +  +I+  L    KL  L L  N +S      I        L  L LS N  S    L 
Sbjct: 142 KIT-DITV-LSRLTKLDTLSLEDNQIS-----DIVPLAGLTKLQNLYLSKNHISDLRALA 194

Query: 344 ITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIV 403
              LK+L  L L +   + +      NL     +  +   L     ++  G ++   +  
Sbjct: 195 --GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKW 252

Query: 404 NNNNLSGEIQPELDALDSLKILDIS-NNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLND 462
           +    + E+        ++       + +++  +         ++     +   +G+   
Sbjct: 253 HLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRIT 312

Query: 463 AITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFS 500
           A    T   Y              W F+   +   DF+
Sbjct: 313 APKPPTKQGYVFKGWYTEKNGGHEWNFNTDYMSGNDFT 350

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 88.3 bits (219), Expect = 5e-19
 Identities = 54/304 (17%), Positives = 104/304 (34%), Gaps = 46/304 (15%)

Query: 295 FFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI-TELKSLQAL 353
             E +  LDLS N ++    S + +      L  L L+ N  +  I     + L SL+ L
Sbjct: 50  LTEAVKSLDLSNNRITYISNSDLQRCVN---LQALVLTSNGIN-TIEEDSFSSLGSLEHL 105

Query: 354 FLSNNLLIGEIPARI-GNLTYLQVIDLSHNMLSGSIPLNIV--GCFQLLALIVNNNNLSG 410
            LS N L   + +     L+ L  ++L  N    ++    +     +L  L V N +   
Sbjct: 106 DLSYNYL-SNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFT 163

Query: 411 EIQPE-LDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTN 469
           +IQ +    L  L+ L+I  + +    P +L  ++++  +          L   +   ++
Sbjct: 164 KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSS 223

Query: 470 LKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGL 529
           ++   +    L                 + ST +    I                     
Sbjct: 224 VECLELRDTDLDTF-----------HFSELSTGETNSLI--------------------- 251

Query: 530 FQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNI-SSLQELTLLNLS 588
            +      + ++   L   +  L ++  L  L+ S N L   +P  I   L  L  + L 
Sbjct: 252 -KKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLH 309

Query: 589 YNSF 592
            N +
Sbjct: 310 TNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 87.5 bits (217), Expect = 8e-19
 Identities = 56/290 (19%), Positives = 97/290 (33%), Gaps = 43/290 (14%)

Query: 108 LEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPEL 167
           ++ L LS+N  T   ++       L+ L L+ N    +  D+   L +L  L L  N   
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN--- 110

Query: 168 GGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLT----GNVHDF 223
                         L  L                 L SL  L+L  N        ++   
Sbjct: 111 -------------YLSNLS----------SSWFKPLSSLTFLNLLGNPYKTLGETSLFSH 147

Query: 224 YQSLLVLNLGSNRFSGTLPCFA-ASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSH 282
              L +L +G+      +     A    L  L++D + +    P  + S+Q ++HL L  
Sbjct: 148 LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM 207

Query: 283 NHLNYEISPRLVF--FEKLLLLDLSFNDLSGPLPSKI-----AQTTEKAGLVLLDLSHNR 335
                 +   +       +  L+L   DL     S++         +K     + ++   
Sbjct: 208 KQHI--LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES 265

Query: 336 FSGEIPLKITELKSLQALFLSNNLLIGEIPARI-GNLTYLQVIDLSHNML 384
              ++   + ++  L  L  S N L   +P  I   LT LQ I L  N  
Sbjct: 266 LF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 61.3 bits (149), Expect = 3e-10
 Identities = 40/219 (18%), Positives = 67/219 (30%), Gaps = 38/219 (17%)

Query: 104 KLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAI-MKLRNLRELILK 162
            L  LE L LS N  +   S+ F  LS L  L+L  N +  +   ++   L  L+ L + 
Sbjct: 98  SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVG 157

Query: 163 GNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLT---GN 219
                  +        +  LE+L+   +      P+SL  ++++ HL L           
Sbjct: 158 NMDTFTKIQRKDFAGLT-FLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEI 216

Query: 220 VHDFYQSLLVLNLGSNRFSG-------------------------------TLPCFAASA 248
             D   S+  L L                                       +       
Sbjct: 217 FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQI 276

Query: 249 MSLTVLKLDNNSVVGGIPTCI-ASLQALTHLNLSHNHLN 286
             L  L+   N +   +P  I   L +L  + L  N  +
Sbjct: 277 SGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 314

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 85.9 bits (213), Expect = 2e-18
 Identities = 63/314 (20%), Positives = 119/314 (37%), Gaps = 31/314 (9%)

Query: 198 ESLYYLKSLKHLDLEKNNLTGNVH-DFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKL 256
                L +   +   K+N+T  V       +  L+      + T+        +L  L+L
Sbjct: 13  FPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVT-TIEGVQ-YLNNLIGLEL 70

Query: 257 DNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSK 316
            +N +       + +L  +T L LS N L   +S  +   + +  LDL+   ++      
Sbjct: 71  KDNQITD--LAPLKNLTKITELELSGNPLK-NVSA-IAGLQSIKTLDLTSTQIT-----D 121

Query: 317 IAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQV 376
           +      + L +L L  N+ +   PL    L +LQ L + N   + ++   + NL+ L  
Sbjct: 122 VTPLAGLSNLQVLYLDLNQITNISPLA--GLTNLQYLSIGNAQ-VSDLTP-LANLSKLTT 177

Query: 377 IDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEI 436
           +    N +S  I   +     L+ + + NN +S      L    +L I+ ++N  I+ + 
Sbjct: 178 LKADDNKIS-DIS-PLASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLTNQTITNQP 233

Query: 437 PLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWL----FSFQ 492
                 L    +V       SG+     T   N  Y   A   L+ NL +++    ++F 
Sbjct: 234 VFYNNNLVVPNVV----KGPSGAPIAPATISDNGTY---ASPNLTWNLTSFINNVSYTFN 286

Query: 493 AIQMMDFSTNKFMG 506
                  +T  F G
Sbjct: 287 QSVTFKNTTVPFSG 300

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 85.5 bits (212), Expect = 2e-18
 Identities = 50/265 (18%), Positives = 103/265 (38%), Gaps = 37/265 (13%)

Query: 326 LVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLS 385
            + +    +  +  +     +L  +  L       +  I   +  L  L  ++L  N ++
Sbjct: 21  AIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTG-VTTIEG-VQYLNNLIGLELKDNQIT 76

Query: 386 GSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKS 445
             +   +    ++  L ++ N L   +   +  L S+K LD+++ QI+   PL  AGL +
Sbjct: 77  -DLA-PLKNLTKITELELSGNPLK-NVSA-IAGLQSIKTLDLTSTQITDVTPL--AGLSN 130

Query: 446 LEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFM 505
           L+++    N ++      +   TNL+Y SI   ++S +L   L +   +  +    NK  
Sbjct: 131 LQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVS-DLTP-LANLSKLTTLKADDNKIS 186

Query: 506 GFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSH 565
                    D+S           L  L  L  ++L  N +   V  L    +L  + L++
Sbjct: 187 ---------DIS----------PLASLPNLIEVHLKNNQIS-DVSPLANTSNLFIVTLTN 226

Query: 566 NSLTGQIPGNISSLQELTLLNLSYN 590
            ++T Q    +     L + N+   
Sbjct: 227 QTITNQ---PVFYNNNLVVPNVVKG 248

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 72.0 bits (177), Expect = 8e-14
 Identities = 60/285 (21%), Positives = 112/285 (39%), Gaps = 24/285 (8%)

Query: 102 LCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELIL 161
              L+    +    +  T  ++     L G+ TL         +  + +  L NL  L L
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLEL 70

Query: 162 KGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTG-NV 220
           K N ++  + P  + N +  + +L+ S N    +   ++  L+S+K LDL    +T    
Sbjct: 71  KDN-QITDLAP--LKNLT-KITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP 124

Query: 221 HDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNL 280
                +L VL L  N+ +  +    A   +L  L + N  V    P  +A+L  LT L  
Sbjct: 125 LAGLSNLQVLYLDLNQIT-NISPL-AGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKA 180

Query: 281 SHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEI 340
             N ++ +ISP L     L+ + L  N +     S ++     + L ++ L++   + + 
Sbjct: 181 DDNKIS-DISP-LASLPNLIEVHLKNNQI-----SDVSPLANTSNLFIVTLTNQTITNQP 233

Query: 341 PLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLS 385
                 L     +   +   I   PA I +       +L+ N+ S
Sbjct: 234 VFYNNNLVVPNVVKGPSGAPI--APATISDNGTYASPNLTWNLTS 276

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 71.6 bits (176), Expect = 1e-13
 Identities = 40/252 (15%), Positives = 92/252 (36%), Gaps = 56/252 (22%)

Query: 346 ELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNN 405
            L +   +    + +   +     +L  +  +      ++ +I   +     L+ L + +
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKD 72

Query: 406 NNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAIT 465
           N ++ ++ P L  L  +  L++S N +   +   +AGL+S++ +D +S  ++      + 
Sbjct: 73  NQIT-DLAP-LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQITDV--TPLA 126

Query: 466 KWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTI 525
             +NL+   +  N+++                                 ++S        
Sbjct: 127 GLSNLQVLYLDLNQIT---------------------------------NIS-------- 145

Query: 526 PKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLL 585
              L  L  L+YL++    +   +  L  L  L  L    N ++  I   ++SL  L  +
Sbjct: 146 --PLAGLTNLQYLSIGNAQVS-DLTPLANLSKLTTLKADDNKIS-DISP-LASLPNLIEV 200

Query: 586 NLSYNSFSGFVP 597
           +L  N  S   P
Sbjct: 201 HLKNNQISDVSP 212

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 57/275 (20%), Positives = 108/275 (39%), Gaps = 53/275 (19%)

Query: 102 LCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELIL 161
           +  L+ L  L L  N  T  ++     L+ +  L+LS N         +  +  +  L  
Sbjct: 59  VQYLNNLIGLELKDNQIT-DLA-PLKNLTKITELELSGNP--------LKNVSAIAGLQ- 107

Query: 162 KGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVH 221
                              +++ LD +           L  L +L+ L L+ N +T N+ 
Sbjct: 108 -------------------SIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQIT-NIS 145

Query: 222 DFYQ--SLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLN 279
                 +L  L++G+ + S  L    A+   LT LK D+N +    P  +ASL  L  ++
Sbjct: 146 PLAGLTNLQYLSIGNAQVS-DLTPL-ANLSKLTTLKADDNKISDISP--LASLPNLIEVH 201

Query: 280 LSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGE 339
           L +N ++ ++SP L     L ++ L+   ++               LV+ ++        
Sbjct: 202 LKNNQIS-DVSP-LANTSNLFIVTLTNQTITNQ------PVFYNNNLVVPNVVKGPSGAP 253

Query: 340 I-PLKITELKSLQALFLSNNLLIGEIPARIGNLTY 373
           I P  I++  +  +  L+ NL      + I N++Y
Sbjct: 254 IAPATISDNGTYASPNLTWNL-----TSFINNVSY 283

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 84.7 bits (210), Expect = 3e-18
 Identities = 49/233 (21%), Positives = 78/233 (33%), Gaps = 34/233 (14%)

Query: 250 SLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDL 309
           +   + L  N +         + + LT L L  N L   I               +F  L
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAA------------AFTGL 79

Query: 310 SGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI-TELKSLQALFLSNNLLIGEIPARI 368
           +               L  LDLS N     +       L  L  L L     + E+   +
Sbjct: 80  AL--------------LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGL 124

Query: 369 -GNLTYLQVIDLSHNMLSGSIPLNI-VGCFQLLALIVNNNNLSGEIQPE-LDALDSLKIL 425
              L  LQ + L  N L  ++P +       L  L ++ N +S  +       L SL  L
Sbjct: 125 FRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRL 182

Query: 426 DISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARN 478
            +  N+++   P     L  L  +   +NNLS    +A+     L+Y  +  N
Sbjct: 183 LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 80.0 bits (198), Expect = 1e-16
 Identities = 57/243 (23%), Positives = 81/243 (33%), Gaps = 35/243 (14%)

Query: 377 IDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEI 436
                  L  ++P+ I    Q + L  + N +S        A  +L IL + +N ++   
Sbjct: 16  TSCPQQGLQ-AVPVGIPAASQRIFL--HGNRISHVPAASFRACRNLTILWLHSNVLARID 72

Query: 437 PLTLAGLKSLEIVDFSSNNLSGSL-NDAITKWTNLKYFSIARNKLSGNLPNWLFS-FQAI 494
                GL  LE +D S N    S+          L    + R  L   L   LF    A+
Sbjct: 73  AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAAL 131

Query: 495 QMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDGQVPGLY 553
           Q +                  L DN L   +P   F+ L  L +L L  N +       +
Sbjct: 132 QYLY-----------------LQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAF 173

Query: 554 R-LRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGN 612
           R L SL  L L  N +    P     L  L  L L  N+ S  +P          A A  
Sbjct: 174 RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALP--------TEALAPL 224

Query: 613 PNL 615
             L
Sbjct: 225 RAL 227

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 78.9 bits (195), Expect = 2e-16
 Identities = 53/208 (25%), Positives = 71/208 (34%), Gaps = 14/208 (6%)

Query: 108 LEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPEL 167
            + + L  N  +   +  F     L  L L  N    +   A   L  L +L L  N +L
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 168 GGVFPGWVGNFSMNLEKLDFSFNSFCGEIPE-SLYYLKSLKHLDLEKNNLTGNVHD--FY 224
             V P         L  L         E+       L +L++L L+ N L   + D  F 
Sbjct: 94  RSVDPATFHGLG-RLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFR 150

Query: 225 --QSLLVLNLGSNRFSGTLPCFA-ASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLS 281
              +L  L L  NR S ++P  A     SL  L L  N V    P     L  L  L L 
Sbjct: 151 DLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 282 HNHLNYEISPRLVF--FEKLLLLDLSFN 307
            N+L     P         L  L L+ N
Sbjct: 210 ANNL--SALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 78.9 bits (195), Expect = 3e-16
 Identities = 54/259 (20%), Positives = 87/259 (33%), Gaps = 57/259 (22%)

Query: 177 NFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNR 236
                 +++    N        S    ++L  L L  N L               + +  
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-------------RIDAAA 75

Query: 237 FSGTLPCFAASAMSLTVLKLDNNSVVGGIP-TCIASLQALTHLNLSHNHLNYEISPRLVF 295
           F+G L         L  L L +N+ +  +       L  L  L+L    L  E+ P L  
Sbjct: 76  FTG-LA-------LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGL-- 124

Query: 296 FEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI-TELKSLQALF 354
                     F  L+               L  L L  N     +P     +L +L  LF
Sbjct: 125 ----------FRGLA--------------ALQYLYLQDNALQ-ALPDDTFRDLGNLTHLF 159

Query: 355 LSNNLLIGEIPARI-GNLTYLQVIDLSHNMLSGSIPLNI-VGCFQLLALIVNNNNLSGEI 412
           L  N  I  +P R    L  L  + L  N ++  +  +      +L+ L +  NNLS  +
Sbjct: 160 LHGN-RISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLS-AL 216

Query: 413 QPE-LDALDSLKILDISNN 430
             E L  L +L+ L +++N
Sbjct: 217 PTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 78.1 bits (193), Expect = 5e-16
 Identities = 54/271 (19%), Positives = 91/271 (33%), Gaps = 56/271 (20%)

Query: 329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARI-GNLTYLQVIDLSHNMLSGS 387
                      +P+ I    + Q +FL  N  I  +PA        L ++ L  N+L+  
Sbjct: 16  TSCPQQGLQ-AVPVGI--PAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLA-R 70

Query: 388 IPLNI-VGCFQLLALIVNNNNLSGEIQPE-LDALDSLKILDISNNQISGEIPL-TLAGLK 444
           I      G   L  L +++N     + P     L  L  L +    +  E+      GL 
Sbjct: 71  IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLA 129

Query: 445 SLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKF 504
           +L+ +    N L    +D      NL +                                
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTH-------------------------------- 157

Query: 505 MGFIPDAVGMDLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDGQVPGLYR-LRSLRALD 562
                    + L  N +  ++P+  F+ L  L+ L L  N +    P  +R L  L  L 
Sbjct: 158 ---------LFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207

Query: 563 LSHNSLTGQIPGNI-SSLQELTLLNLSYNSF 592
           L  N+L+  +P    + L+ L  L L+ N +
Sbjct: 208 LFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 30/114 (26%), Positives = 44/114 (38%), Gaps = 4/114 (3%)

Query: 104 KLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKG 163
            L+ L++L L  NA        F  L  L  L L  N+   V   A   L +L  L+L  
Sbjct: 127 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186

Query: 164 NPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLY-YLKSLKHLDLEKNNL 216
           N  +  V P    +    L  L    N+    +P      L++L++L L  N  
Sbjct: 187 N-RVAHVHPHAFRDLG-RLMTLYLFANNL-SALPTEALAPLRALQYLRLNDNPW 237

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 77.7 bits (192), Expect = 1e-16
 Identities = 28/167 (16%), Positives = 71/167 (42%), Gaps = 10/167 (5%)

Query: 269 IASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVL 328
            A + +LT++ L++ ++  +++  + +   +  L ++    +    + I+  +    L  
Sbjct: 40  EAQMNSLTYITLANINVT-DLTG-IEYAHNIKDLTINNIHATNY--NPISGLSN---LER 92

Query: 329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSI 388
           L +     + +    ++ L SL  L +S++     I  +I  L  +  IDLS+N     I
Sbjct: 93  LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI 152

Query: 389 PLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGE 435
              +    +L +L +  + +  + +  ++    L  L   +  I G+
Sbjct: 153 M-PLKTLPELKSLNIQFDGVH-DYRG-IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 73.1 bits (180), Expect = 5e-15
 Identities = 24/191 (12%), Positives = 70/191 (36%), Gaps = 25/191 (13%)

Query: 404 NNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDA 463
              + +  I      ++SL  + ++N  ++    +      +++ +  ++ + +    + 
Sbjct: 30  LGQSSTANITEA--QMNSLTYITLANINVTDLTGI--EYAHNIKDLTINNIHATNY--NP 83

Query: 464 ITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHG 523
           I+  +NL+   I    ++ +    L    ++ ++D                 +S +    
Sbjct: 84  ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD-----------------ISHSAHDD 126

Query: 524 TIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELT 583
           +I   +  L  +  ++LS+N     +  L  L  L++L++  + +       I    +L 
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLN 184

Query: 584 LLNLSYNSFSG 594
            L     +  G
Sbjct: 185 QLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 66.9 bits (164), Expect = 8e-13
 Identities = 34/226 (15%), Positives = 70/226 (30%), Gaps = 50/226 (22%)

Query: 345 TELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVN 404
           +  K+     L  +     I      +  L  I L++  ++    +       +  L +N
Sbjct: 20  STFKAYLNGLLGQSS-TANIT--EAQMNSLTYITLANINVTDLTGIE--YAHNIKDLTIN 74

Query: 405 NNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAI 464
           N + +    P +  L +L+ L I    ++ +    L+GL SL ++D S +    S+   I
Sbjct: 75  NIHAT-NYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132

Query: 465 TKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGT 524
                +    ++ N    ++                                        
Sbjct: 133 NTLPKVNSIDLSYNGAITDI---------------------------------------- 152

Query: 525 IPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTG 570
               L  L  L+ LN+ F+ +     G+     L  L     ++ G
Sbjct: 153 --MPLKTLPELKSLNIQFDGVHD-YRGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 30/189 (15%), Positives = 61/189 (32%), Gaps = 40/189 (21%)

Query: 417 DALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIA 476
               +     +  +  +    +T A + SL  +  ++ N++  L   I    N+K  +I 
Sbjct: 20  STFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVT-DL-TGIEYAHNIKDLTIN 74

Query: 477 RNKLS-----GNLPN--WLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGL 529
               +       L N   L                           +    +       L
Sbjct: 75  NIHATNYNPISGLSNLERL--------------------------RIMGKDVTSDKIPNL 108

Query: 530 FQLQGLEYLNLSFNFL-DGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLS 588
             L  L  L++S +   D  +  +  L  + ++DLS+N     I   + +L EL  LN+ 
Sbjct: 109 SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQ 167

Query: 589 YNSFSGFVP 597
           ++    +  
Sbjct: 168 FDGVHDYRG 176

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.7 bits (135), Expect = 5e-09
 Identities = 25/164 (15%), Positives = 50/164 (30%), Gaps = 12/164 (7%)

Query: 126 FGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKL 185
              ++ L  + L+      +    I    N+++L +          P  +   S NLE+L
Sbjct: 40  EAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNI-HATNYNP--ISGLS-NLERL 93

Query: 186 DFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDF---YQSLLVLNLGSNRFSGTLP 242
                    +   +L  L SL  LD+  +    ++         +  ++L  N     + 
Sbjct: 94  RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM 153

Query: 243 CFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLN 286
               +   L  L +  + V       I     L  L      + 
Sbjct: 154 PL-KTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.4 bits (134), Expect = 6e-09
 Identities = 23/117 (19%), Positives = 40/117 (34%), Gaps = 5/117 (4%)

Query: 102 LCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELIL 161
           +  LS LE L +     T        GL+ L  LD+S++     +   I  L  +  + L
Sbjct: 84  ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143

Query: 162 KGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTG 218
             N  +  + P  +      L+ L+  F+         +     L  L      + G
Sbjct: 144 SYNGAITDIMP--LKTLP-ELKSLNIQFDGV--HDYRGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 1/79 (1%)

Query: 86  SINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGV 145
            + +    ++    P L  L+ L  L +S +A    I T    L  + ++DLSYN  +  
Sbjct: 92  RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD 151

Query: 146 VPDAIMKLRNLRELILKGN 164
           +   +  L  L+ L ++ +
Sbjct: 152 I-MPLKTLPELKSLNIQFD 169

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 78.6 bits (194), Expect = 4e-16
 Identities = 51/267 (19%), Positives = 94/267 (35%), Gaps = 56/267 (20%)

Query: 326 LVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLS 385
            +  +L     +  +     EL S+  +  +N+  I  +   I  L  +  + L+ N L+
Sbjct: 26  TIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSD-IKSVQG-IQYLPNVTKLFLNGNKLT 81

Query: 386 GSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKS 445
              PL       L  L ++ N +  ++   L  L  LK L + +N IS +I   L  L  
Sbjct: 82  DIKPLA--NLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGIS-DIN-GLVHLPQ 135

Query: 446 LEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFM 505
           LE +   +N ++      +++ T L   S+  N++S                        
Sbjct: 136 LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS------------------------ 169

Query: 506 GFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSH 565
                    D+            L  L  L+ L LS N +   +  L  L++L  L+L  
Sbjct: 170 ---------DIV----------PLAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELFS 209

Query: 566 NSLTGQIPGNISSLQELTLLNLSYNSF 592
                +   + S+L     +  +  S 
Sbjct: 210 QECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 78.6 bits (194), Expect = 4e-16
 Identities = 57/287 (19%), Positives = 104/287 (36%), Gaps = 50/287 (17%)

Query: 198 ESLYYLKSLKHLDLEKNNLTGNVH-DFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKL 256
            S          +L+K ++T  V  +   S+  +   ++                    +
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK----------------SV 61

Query: 257 DNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSK 316
                       I  L  +T L L+ N L  +I P L   + L  L L  N +       
Sbjct: 62  QG----------IQYLPNVTKLFLNGNKLT-DIKP-LANLKNLGWLFLDENKV-----KD 104

Query: 317 IAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQV 376
           ++   +   L  L L HN  S    L    L  L++L+L NN  I +I   +  LT L  
Sbjct: 105 LSSLKDLKKLKSLSLEHNGISDINGLV--HLPQLESLYLGNN-KITDITV-LSRLTKLDT 160

Query: 377 IDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEI 436
           + L  N +S  I   + G  +L  L ++ N++S +++  L  L +L +L++ + +   + 
Sbjct: 161 LSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKP 216

Query: 437 PLTLAGLKSLEIVDFSSNNLS--------GSLNDAITKWTNLKYFSI 475
               + L     V  +  +L         G       KW   ++ + 
Sbjct: 217 INHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNE 263

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 65.1 bits (159), Expect = 1e-11
 Identities = 51/287 (17%), Positives = 94/287 (32%), Gaps = 46/287 (16%)

Query: 128 GLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDF 187
             +     +L        V     +L ++ ++I   +                +++ +  
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNS----------------DIKSV-- 61

Query: 188 SFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQ--SLLVLNLGSNRFSGTLPCFA 245
                     + + YL ++  L L  N LT ++       +L  L L  N+    L    
Sbjct: 62  ----------QGIQYLPNVTKLFLNGNKLT-DIKPLANLKNLGWLFLDENKVK-DLSSLK 109

Query: 246 ASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLS 305
                L  L L++N +       +  L  L  L L +N +  +I+  L    KL  L L 
Sbjct: 110 DLK-KLKSLSLEHNGIS--DINGLVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLE 164

Query: 306 FNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIP 365
            N +S      I        L  L LS N  S    L    LK+L  L L +   + +  
Sbjct: 165 DNQIS-----DIVPLAGLTKLQNLYLSKNHISDLRALA--GLKNLDVLELFSQECLNKPI 217

Query: 366 ARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEI 412
               NL     +  +   L     ++  G ++   +  +    + E+
Sbjct: 218 NHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEV 264

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 5/79 (6%)

Query: 515 DLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPG 574
             +++ +     +G+  L  +  L L+ N L   +  L  L++L  L L  N +   +  
Sbjct: 52  IANNSDI--KSVQGIQYLPNVTKLFLNGNKLT-DIKPLANLKNLGWLFLDENKVK-DLSS 107

Query: 575 NISSLQELTLLNLSYNSFS 593
            +  L++L  L+L +N  S
Sbjct: 108 -LKDLKKLKSLSLEHNGIS 125

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 78.3 bits (193), Expect = 9e-16
 Identities = 44/254 (17%), Positives = 96/254 (37%), Gaps = 25/254 (9%)

Query: 329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARI-GNLTYLQVIDLSHNMLSGS 387
                ++ + EIP  +   ++   L       +  I          L+ I++S N +   
Sbjct: 14  FLCQESKVT-EIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEV 69

Query: 388 IPLNI-VGCFQLLALIVNNNNLSGEIQPE-LDALDSLKILDISNNQISGEIP-LTLAGLK 444
           I  ++     +L  + +   N    I PE    L +L+ L ISN  I   +P +      
Sbjct: 70  IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSL 128

Query: 445 SLEIVDFSSNNLSGSL-NDAITKWT-NLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTN 502
              ++D   N    ++  ++    +       + +N +   + N  F+   +  ++ S N
Sbjct: 129 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDN 187

Query: 503 KFMGFIPDAV--------GMDLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDGQVPGLY 553
             +  +P+ V         +D+S   +H ++P    + L+ L   +        ++P L 
Sbjct: 188 NNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLK---KLPTLE 243

Query: 554 RLRSLRALDLSHNS 567
           +L +L    L++ S
Sbjct: 244 KLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 69.1 bits (169), Expect = 1e-12
 Identities = 38/237 (16%), Positives = 78/237 (32%), Gaps = 18/237 (7%)

Query: 130 SGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSF 189
                L     K   +   A     +L ++ +  N  L  +      N    L ++    
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP-KLHEIRIEK 88

Query: 190 NSFCGEIPES-LYYLKSLKHLDLEKNNLT---GNVHDFYQSLLVLNLGSNRFSGTLP--C 243
            +    I       L +L++L +    +              ++L++  N    T+    
Sbjct: 89  ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 148

Query: 244 FAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVF--FEKLLL 301
           F   +    +L L+ N +     +     Q        +N+L  E  P  VF      ++
Sbjct: 149 FVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNL--EELPNDVFHGASGPVI 206

Query: 302 LDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNN 358
           LD+S   +   LPS   +  +K  L      + +   ++P  + +L +L    L+  
Sbjct: 207 LDISRTRIH-SLPSYGLENLKK--LRARSTYNLK---KLPT-LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 56.4 bits (136), Expect = 1e-08
 Identities = 31/162 (19%), Positives = 60/162 (37%), Gaps = 9/162 (5%)

Query: 126 FGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKL 185
           F  L  L+ L +S      +     +       L ++ N  +  +        S     L
Sbjct: 100 FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL 159

Query: 186 DFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHD--FY--QSLLVLNLGSNRFSGTL 241
             + N    EI  S +    L  L+L  NN    + +  F+     ++L++   R   +L
Sbjct: 160 WLNKNGI-QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SL 217

Query: 242 PCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHN 283
           P  +    +L  L+  +   +  +PT +  L AL   +L++ 
Sbjct: 218 P--SYGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYP 256

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 79.2 bits (196), Expect = 1e-15
 Identities = 75/428 (17%), Positives = 134/428 (31%), Gaps = 75/428 (17%)

Query: 108 LEFLVLSSNAFT-GRISTCFGGLSGLKTLDLSYNKF----VGVVPDAIMKLRNLRELILK 162
           ++ L +     +  R +     L   + + L            +  A+     L EL L+
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 163 GNPELGGVFPGWV------GNFSMNLEKLDFSFNSF----CGEIPESLYYLKSLKHLDLE 212
            N ELG    G           S  ++KL           CG +  +L  L +L+ L L 
Sbjct: 65  SN-ELGD--VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 213 KNNLTGN-VHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSV----VGGIPT 267
            N L    +    + LL                      L  L+L+  S+       + +
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQ-----------------CRLEKLQLEYCSLSAASCEPLAS 164

Query: 268 CIASLQALTHLNLSHNHLNYE----ISPRLVFFE-KLLLLDLSFNDLSGPLPSKIAQT-T 321
            + +      L +S+N +N      +   L     +L  L L    ++      +     
Sbjct: 165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA 224

Query: 322 EKAGLVLLDLSHNRFSGE-----IPLKITELKSLQALFLSNNLLIGEIPAR-----IGNL 371
            KA L  L L  N+          P  +     L+ L++     I           +   
Sbjct: 225 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAK 283

Query: 372 TYLQVIDLSHNMLSGSIPLNIV-----GCFQLLALIVNNNNLSGE----IQPELDALDSL 422
             L+ + L+ N L       +         QL +L V + + +          L     L
Sbjct: 284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL 343

Query: 423 KILDISNNQISGEIPLTLA-GLKS----LEIVDFSSNNLS----GSLNDAITKWTNLKYF 473
             L ISNN++       L  GL      L ++  +  ++S     SL   +    +L+  
Sbjct: 344 LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL 403

Query: 474 SIARNKLS 481
            ++ N L 
Sbjct: 404 DLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 76.2 bits (188), Expect = 1e-14
 Identities = 82/466 (17%), Positives = 146/466 (31%), Gaps = 107/466 (22%)

Query: 179 SMNLEKLDFSFNSFCGE-IPESLYYLKSLKHLDLEKNNLT-------GNVHDFYQSLLVL 230
           S++++ LD            E L  L+  + + L+   LT        +      +L  L
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 231 NLGSNRFSGT-----LPCFAASAMSLTVLKLDNNSV----VGGIPTCIASLQALTHLNLS 281
           NL SN          L      +  +  L L N  +     G + + + +L  L  L+LS
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 282 HNHLNYEISPRLVFFE-----KLLLLDLSFNDLSGPLPSKIAQT-TEKAGLVLLDLSHNR 335
            N L       L         +L  L L +  LS      +A     K     L +S+N 
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181

Query: 336 FSGEIPLKITE-LK----SLQALFLSNNLL----IGEIPARIGNLTYLQVIDLSHNMLSG 386
            +      + + LK     L+AL L +  +      ++   + +   L+ + L  N L  
Sbjct: 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241

Query: 387 SIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGE----IPLTLAG 442
                  G  +L   +++ ++              L+ L I    I+ +    +   L  
Sbjct: 242 V------GMAELCPGLLHPSS-------------RLRTLWIWECGITAKGCGDLCRVLRA 282

Query: 443 LKSLEIVDFSSNNLSGS----LNDAITKW-TNLKYFSIARNKLSGNLPNWLFSFQAIQMM 497
            +SL+ +  + N L       L + + +    L+   +     +                
Sbjct: 283 KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT---------------- 326

Query: 498 DFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFL-DGQVPGL---- 552
                        A     S           L Q + L  L +S N L D  V  L    
Sbjct: 327 ------------AACCSHFS---------SVLAQNRFLLELQISNNRLEDAGVRELCQGL 365

Query: 553 -YRLRSLRALDLSHNSLTGQ----IPGNISSLQELTLLNLSYNSFS 593
                 LR L L+   ++      +   + +   L  L+LS N   
Sbjct: 366 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 73.8 bits (182), Expect = 5e-14
 Identities = 76/472 (16%), Positives = 144/472 (30%), Gaps = 77/472 (16%)

Query: 204 KSLKHLDLEKNNLTGN----VHDFYQSLLVLNLGSNRFSGTLPCFAASAM----SLTVLK 255
             ++ LD++   L+      +    Q   V+ L     +       +SA+    +L  L 
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 256 LDNNSV----VGGIPTCIASLQA-LTHLNLSHNHLNYE----ISPRLVFFEKLLLLDLSF 306
           L +N +    V  +   + +    +  L+L +  L       +S  L     L  L LS 
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 307 NDLSGPLPSKIAQTTEKAGLVL--LDLSHNRFSGEIPLKITEL----KSLQALFLSNNLL 360
           N L       + +        L  L L +   S      +  +       + L +SNN +
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

Query: 361 IGE-----IPARIGNLTYLQVIDLSHNMLS----GSIPLNIVGCFQLLALIVNNNNLSGE 411
                         +   L+ + L    ++      +   +     L  L + +N L   
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242

Query: 412 -----IQPELDALDSLKILDISNNQISGE----IPLTLAGLKSLEIVDFSSNNLSGS--- 459
                    L     L+ L I    I+ +    +   L   +SL+ +  + N L      
Sbjct: 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302

Query: 460 -LNDAITKW-TNLKYFSIARNKLSG----NLPNWLFSFQAIQMMDFSTNKFMGFIPDAVG 513
            L + + +    L+   +     +     +  + L   + +  +  S N+    + DA  
Sbjct: 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR----LEDAGV 358

Query: 514 MDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQ-----VPGLYRLRSLRALDLSHNSL 568
            +L   L              L  L L+   +           L    SLR LDLS+N L
Sbjct: 359 RELCQGLGQPG--------SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410

Query: 569 TGQIPGNISSLQE-----LTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNL 615
                  +          L  L L    +S     ++   +        P+L
Sbjct: 411 GDAGILQLVESVRQPGCLLEQLVLYDIYWS-----EEMEDRLQALEKDKPSL 457

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 75.2 bits (184), Expect = 3e-14
 Identities = 36/194 (18%), Positives = 72/194 (37%), Gaps = 12/194 (6%)

Query: 265 IPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKA 324
           + + + S + L  L   +      I   +   + LL    +    S        +  +  
Sbjct: 364 LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTL------KAVDPM 417

Query: 325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNML 384
               LD   ++F  E  +   E   ++ L L++  L   +   +  L  +  +DLSHN L
Sbjct: 418 RAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRL 475

Query: 385 SGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISG-EIPLTLAGL 443
             ++P  +     L  L  ++N L   +   +  L  L+ L + NN++        L   
Sbjct: 476 R-ALPPALAALRCLEVLQASDNALE-NV-DGVANLPRLQELLLCNNRLQQSAAIQPLVSC 532

Query: 444 KSLEIVDFSSNNLS 457
             L +++   N+L 
Sbjct: 533 PRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 73.6 bits (180), Expect = 7e-14
 Identities = 59/324 (18%), Positives = 102/324 (31%), Gaps = 35/324 (10%)

Query: 275 LTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAG------LVL 328
             H++     L+   S  L    ++  L L  ++    +  +      +        L  
Sbjct: 247 CVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPA 306

Query: 329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSI 388
             L+         +  T   S +   L  +               L   +LS    +  +
Sbjct: 307 ASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECW-CRDSATDEQLFRCELSVEKST-VL 364

Query: 389 PLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEI 448
              +  C +L  L   N      I   + ALD L     +    S    L          
Sbjct: 365 QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFST---LKAVDPMRAAY 421

Query: 449 VDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFI 508
           +D   +      +    ++ +++   +A   L+            ++ +   T+      
Sbjct: 422 LDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT--------VLCHLEQLLLVTH------ 467

Query: 509 PDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSL 568
                +DLS N L   +P  L  L+ LE L  S N L+  V G+  L  L+ L L +N L
Sbjct: 468 -----LDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDGVANLPRLQELLLCNNRL 520

Query: 569 TGQIPG--NISSLQELTLLNLSYN 590
             Q      + S   L LLNL  N
Sbjct: 521 Q-QSAAIQPLVSCPRLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 61.7 bits (149), Expect = 4e-10
 Identities = 56/372 (15%), Positives = 101/372 (27%), Gaps = 57/372 (15%)

Query: 217 TGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALT 276
               HD    + V    +             +   T+L + + + +             +
Sbjct: 238 RAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPS 297

Query: 277 HLNLSHNHLNYEISPRLVFFEKLLLLDLSF----NDLSGPLPSKIAQTTEKAGLVLLDLS 332
           H+ L                 +++            L          +     L   +LS
Sbjct: 298 HVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELS 357

Query: 333 HNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNI 392
             + S  +  ++   K LQ L   N   +  I   I  +  L  +      L     L  
Sbjct: 358 VEK-STVLQSELESCKELQELEPENKWCLLTI---ILLMRALDPLLYEKETLQYFSTLKA 413

Query: 393 VGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFS 452
           V   +   L    +    E          +++L +++  ++  +   L  L  +  +D S
Sbjct: 414 VDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLC-HLEQLLLVTHLDLS 471

Query: 453 SNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAV 512
            N L  +L  A+     L+    + N L  N+                            
Sbjct: 472 HNRLR-ALPPALAALRCLEVLQASDNALE-NVD--------------------------- 502

Query: 513 GMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDG--QVPGLYRLRSLRALDLSHNSLTG 570
                          G+  L  L+ L L  N L     +  L     L  L+L  NSL  
Sbjct: 503 ---------------GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC- 546

Query: 571 QIPGNISSLQEL 582
           Q  G    L E+
Sbjct: 547 QEEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.8 bits (131), Expect = 6e-08
 Identities = 39/212 (18%), Positives = 62/212 (29%), Gaps = 36/212 (16%)

Query: 9   VHSCRALKLQMLPLLLFLLLLCSNPSESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSN 68
           + SC+ L+         LL +         L  E +           DP +        +
Sbjct: 368 LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 427

Query: 69  CTNWTGVACNFQTGHVVSINLTD---TSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTC 125
                      +   V  ++L     T L       L +L  +  L LS N     +   
Sbjct: 428 KFLLENSVLKMEYADVRVLHLAHKDLTVLCH-----LEQLLLVTHLDLSHNRLR-ALPPA 481

Query: 126 FGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKL 185
              L  L+ L  S N    V  D +  L  L+EL+L  N                 L++ 
Sbjct: 482 LAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNN----------------RLQQS 523

Query: 186 DFSFNSFCGEIPESLYYLKSLKHLDLEKNNLT 217
                       + L     L  L+L+ N+L 
Sbjct: 524 ---------AAIQPLVSCPRLVLLNLQGNSLC 546

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 52/227 (22%), Positives = 96/227 (42%), Gaps = 30/227 (13%)

Query: 349 SLQALFLSNNLLIGEIPARI-GNLTYLQVIDLSHNMLSGSIPLNIVGCF----QLLALIV 403
           S + L LS N  +  + +    +   LQV+DLS   +  +I     G +     L  LI+
Sbjct: 29  STKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQ-TIE---DGAYQSLSHLSTLIL 83

Query: 404 NNNNLSGEIQPEL-DALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNL-SGSLN 461
             N +   +       L SL+ L      ++      +  LK+L+ ++ + N + S  L 
Sbjct: 84  TGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 462 DAITKWTNLKYFSIARNKLSGNLPNWLF-SFQAIQMMDFSTNKFMGFIPDAVGMDLSDNL 520
           +  +  TNL++  ++ NK+  ++          + +++ S             +DLS N 
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLS-------------LDLSLNP 188

Query: 521 LHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLY-RLRSLRALDLSHN 566
           ++  I  G F+   L+ L L  N L     G++ RL SL+ + L  N
Sbjct: 189 MN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 65.0 bits (159), Expect = 9e-12
 Identities = 43/188 (22%), Positives = 71/188 (37%), Gaps = 11/188 (5%)

Query: 104 KLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKG 163
               L+ L LS           +  LS L TL L+ N    +   A   L +L++L+   
Sbjct: 50  SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109

Query: 164 NPELGGVFPGWVGNFSMNLEKLDFSFNSFCG-EIPESLYYLKSLKHLDLEKNNLT---GN 219
              L  +    +G+    L++L+ + N     ++PE    L +L+HLDL  N +      
Sbjct: 110 TN-LASLENFPIGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167

Query: 220 VHDFYQSL----LVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQAL 275
                  +    L L+L  N  +  +   A   + L  L LD N +          L +L
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSL 226

Query: 276 THLNLSHN 283
             + L  N
Sbjct: 227 QKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 63/278 (22%), Positives = 89/278 (32%), Gaps = 76/278 (27%)

Query: 108 LEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPEL 167
            + L LS N      S  F     L+ LDLS  +   +   A   L +L  LIL GNP  
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-- 87

Query: 168 GGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSL 227
                         ++ L             +   L SL+ L   + NL           
Sbjct: 88  --------------IQSLA----------LGAFSGLSSLQKLVAVETNLA---------- 113

Query: 228 LVLNLGSNRFSGTLPCFAASAM-SLTVLKLDNNSV-VGGIPTCIASLQALTHLNLSHNHL 285
                       +L  F    + +L  L + +N +    +P   ++L  L HL+LS N +
Sbjct: 114 ------------SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

Query: 286 NYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKIT 345
              I         L  + L                        LDLS N  +  I     
Sbjct: 162 QS-IYCTD--LRVLHQMPLLNLS--------------------LDLSLNPMN-FIQPGAF 197

Query: 346 ELKSLQALFLSNNLLIGEIPARI-GNLTYLQVIDLSHN 382
           +   L+ L L  N L   +P  I   LT LQ I L  N
Sbjct: 198 KEIRLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTN 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 68.5 bits (168), Expect = 5e-13
 Identities = 45/250 (18%), Positives = 79/250 (31%), Gaps = 56/250 (22%)

Query: 349 SLQALFLSNNLLIGEIPARI-GNLTYLQVIDLSHNMLSGSIPLNI-VGCFQLLALIVNNN 406
           S Q L L     +  IP+    NL  +  I +S ++    +  +      ++  + + N 
Sbjct: 32  STQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 407 NLSGEIQPE-LDALDSLKILDISNNQISGEIP--LTLAGLKSLEIVDFSSNNLSGSLNDA 463
                I P+ L  L  LK L I N  +    P    +       I++ + N    S+   
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSI--- 146

Query: 464 ITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHG 523
                                                 N F G   + + + L +N    
Sbjct: 147 ------------------------------------PVNAFQGLCNETLTLKLYNNGFT- 169

Query: 524 TIPKGLFQLQGLEYLNLSFNFLDGQVP-----GLYRLRSLRALDLSHNSLTGQIPGNI-S 577
           ++    F    L+ + L+ N     +      G+Y       LD+S  S+T  +P     
Sbjct: 170 SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSG--PSLLDVSQTSVT-ALPSKGLE 226

Query: 578 SLQELTLLNL 587
            L+EL   N 
Sbjct: 227 HLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 45/313 (14%), Positives = 85/313 (27%), Gaps = 85/313 (27%)

Query: 99  HPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRE 158
               C+    E   ++      RI          +TL L       +   A   L N+  
Sbjct: 4   SSPPCECHQEEDFRVTCKDIQ-RIP---SLPPSTQTLKLIETHLRTIPSHAFSNLPNISR 59

Query: 159 LILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTG 218
           + +  +  L  +                    SF          L  + H+++       
Sbjct: 60  IYVSIDVTLQQLESH-----------------SFYN--------LSKVTHIEIRNTR--- 91

Query: 219 NVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIP--TCIASLQALT 276
                     +  +  +     LP        L  L + N  +    P  T + S     
Sbjct: 92  ---------NLTYIDPDALKE-LP-------LLKFLGIFNTGLK-MFPDLTKVYSTDIFF 133

Query: 277 HLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRF 336
            L ++ N     I               +F  L                 + L L +N F
Sbjct: 134 ILEITDNPYMTSIPVN------------AFQGLC-------------NETLTLKLYNNGF 168

Query: 337 SGEIPLKITELKSLQALFLSNNLLIGEIPARI--GNLTYLQVIDLSHNMLSGSIPLNIVG 394
           +  +         L A++L+ N  +  I      G  +   ++D+S   ++ ++P     
Sbjct: 169 T-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALP---SK 223

Query: 395 CFQ-LLALIVNNN 406
             + L  LI  N 
Sbjct: 224 GLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 18/108 (16%), Positives = 37/108 (34%), Gaps = 18/108 (16%)

Query: 515 DLSDNLLHGTIPKGLFQ-LQGLEYLNLSFN----FLDGQVPGLYRLRSLRALDLSHNSLT 569
            +S ++    +    F  L  + ++ +       ++D     L  L  L+ L + +  L 
Sbjct: 61  YVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA--LKELPLLKFLGIFNTGLK 118

Query: 570 GQIPGN--ISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNL 615
              P    + S     +L ++ N +   +P          AF G  N 
Sbjct: 119 -MFPDLTKVYSTDIFFILEITDNPYMTSIP--------VNAFQGLCNE 157

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 70.3 bits (172), Expect = 5e-13
 Identities = 48/191 (25%), Positives = 76/191 (39%), Gaps = 23/191 (12%)

Query: 302 LDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKIT--ELKSLQALFLSNNL 359
           L  S   L   +P  +   T       LDLSHN  S  +  + T   L +L +L LS+N 
Sbjct: 23  LSCSKQQLPN-VPQSLPSYTAL-----LDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNH 75

Query: 360 LIGEIPARI-GNLTYLQVIDLSHNMLSGSIPLNI-VGCFQLLALIVNNNNLSGEIQPE-L 416
            +  I +     +  L+ +DLS N L  ++   +      L  L++ NN++   +     
Sbjct: 76  -LNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAF 132

Query: 417 DALDSLKILDISNNQISGEIP----LTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKY 472
           + +  L+ L +S NQIS   P         L  L ++D SSN L       + K      
Sbjct: 133 EDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK 191

Query: 473 FSIARNKLSGN 483
             +    L  N
Sbjct: 192 NGL---YLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 64.1 bits (156), Expect = 4e-11
 Identities = 44/200 (22%), Positives = 78/200 (39%), Gaps = 41/200 (20%)

Query: 264 GIPTCIASLQALTHLNLSHNHLNYEISPRLVF--FEKLLLLDLSFNDLSGPLPSKI-AQT 320
            +P+          L+LSHN+L+  +           L  L LS N L+  + S+     
Sbjct: 36  SLPS------YTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPV 87

Query: 321 TEKAGLVLLDLSHNRFSGEIPLKI-TELKSLQALFLSNNLLIGEIPARI-GNLTYLQVID 378
                L  LDLS N     +   + ++L++L+ L L NN  I  +      ++  LQ + 
Sbjct: 88  PN---LRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLY 142

Query: 379 LSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPL 438
           LS N +S   P+ +    +                 + + L  L +LD+S+N++      
Sbjct: 143 LSQNQIS-RFPVEL---IK-----------------DGNKLPKLMLLDLSSNKLKKLPLT 181

Query: 439 TLAGLKSL--EIVDFSSNNL 456
            L  L +     +   +N L
Sbjct: 182 DLQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 63.7 bits (155), Expect = 6e-11
 Identities = 40/221 (18%), Positives = 73/221 (33%), Gaps = 53/221 (23%)

Query: 375 QVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPE--LDALDSLKILDISNNQI 432
            ++  S   L  ++P ++     LL L  ++NNLS  ++ E     L +L  L +S+N +
Sbjct: 21  NILSCSKQQLP-NVPQSLPSYTALLDL--SHNNLS-RLRAEWTPTRLTNLHSLLLSHNHL 76

Query: 433 SGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQ 492
           +         + +L  +D SSN+L        +    L+   +  N +            
Sbjct: 77  NFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV----------- 125

Query: 493 AIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFL----DG 547
                                           + +  F+ +  L+ L LS N +      
Sbjct: 126 -------------------------------VVDRNAFEDMAQLQKLYLSQNQISRFPVE 154

Query: 548 QVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLS 588
            +    +L  L  LDLS N L      ++  L       L 
Sbjct: 155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 59.9 bits (145), Expect = 9e-10
 Identities = 38/146 (26%), Positives = 49/146 (33%), Gaps = 18/146 (12%)

Query: 104 KLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKG 163
           +L+ L  L+LS N      S  F  +  L+ LDLS N    +       L+ L  L+L  
Sbjct: 62  RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYN 121

Query: 164 NP--EL-GGVFPGWVGNFSMNLEKLDFSFNSFCGEIPE----SLYYLKSLKHLDLEKNNL 216
           N    +    F          L+KL  S N      P         L  L  LDL  N L
Sbjct: 122 NHIVVVDRNAFEDMA-----QLQKLYLSQNQI-SRFPVELIKDGNKLPKLMLLDLSSNKL 175

Query: 217 TGNVHDFYQSL-----LVLNLGSNRF 237
                   Q L       L L +N  
Sbjct: 176 KKLPLTDLQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.5 bits (131), Expect = 5e-08
 Identities = 44/181 (24%), Positives = 69/181 (38%), Gaps = 52/181 (28%)

Query: 421 SLKILDISNNQISGEIP--LTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARN 478
              +LD+S+N +S  +    T   L +L  +  S N+L+   ++A     NL+Y      
Sbjct: 40  YTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYL----- 93

Query: 479 KLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQ-LQGLEY 537
                                               DLS N LH T+ + LF  LQ LE 
Sbjct: 94  ------------------------------------DLSSNHLH-TLDEFLFSDLQALEV 116

Query: 538 LNLSFNFLDGQVPGLYR-LRSLRALDLSHNSLTGQIP----GNISSLQELTLLNLSYNSF 592
           L L  N +       +  +  L+ L LS N ++ + P     + + L +L LL+LS N  
Sbjct: 117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKL 175

Query: 593 S 593
            
Sbjct: 176 K 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 47/170 (27%), Positives = 65/170 (38%), Gaps = 14/170 (8%)

Query: 177 NFSMNLEKLDFSFNSFCGEIP--ESLYYLKSLKHLDLEKNNLT---GNVHDFYQSLLVLN 231
           +       LD S N+    +    +   L +L  L L  N+L            +L  L+
Sbjct: 36  SLPSYTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94

Query: 232 LGSNRFSGTLPCFAASAM-SLTVLKLDNNSVVGGIPTCI-ASLQALTHLNLSHNHLNY-- 287
           L SN    TL  F  S + +L VL L NN +V  +       +  L  L LS N ++   
Sbjct: 95  LSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFP 152

Query: 288 -EISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRF 336
            E+        KL+LLDLS N L   LP    Q         L L +N  
Sbjct: 153 VELIKDGNKLPKLMLLDLSSNKLKK-LPLTDLQKLPAWVKNGLYLHNNPL 201

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 68.2 bits (167), Expect = 1e-12
 Identities = 49/219 (22%), Positives = 81/219 (36%), Gaps = 25/219 (11%)

Query: 349 SLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNL 408
           S   +      L   +P  +       ++ LS N+L       ++   +L  L ++   L
Sbjct: 11  SHLEVNCDKRNL-TALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 409 SGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWT 468
           +         L  L  LD+S+NQ+   +PL    L +L ++D S N L+     A+    
Sbjct: 68  T--KLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124

Query: 469 NLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKG 528
            L+   +  N+L   LP  L +                  P    + L++N L   +P G
Sbjct: 125 ELQELYLKGNELK-TLPPGLLTPT----------------PKLEKLSLANNNLT-ELPAG 166

Query: 529 LFQ-LQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHN 566
           L   L+ L+ L L  N L     G +    L    L  N
Sbjct: 167 LLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 67.1 bits (164), Expect = 2e-12
 Identities = 51/208 (24%), Positives = 75/208 (36%), Gaps = 37/208 (17%)

Query: 250 SLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHL-NYEISPRLVFFEKLLLLDLSFND 308
             T+L L  N +       +     LT LNL    L   ++   L     L  LDLS N 
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLP---VLGTLDLSHNQ 88

Query: 309 LSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI-TELKSLQALFLSNNLLIGEIPAR 367
           L   LP           L +LD+S NR +  +PL     L  LQ L+L  N L   +P  
Sbjct: 89  LQS-LPLLGQTLPA---LTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNEL-KTLPPG 142

Query: 368 I-GNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILD 426
           +      L+ + L++N L+  +P  +                       L+ L++L  L 
Sbjct: 143 LLTPTPKLEKLSLANNNLT-ELPAGL-----------------------LNGLENLDTLL 178

Query: 427 ISNNQISGEIPLTLAGLKSLEIVDFSSN 454
           +  N +   IP    G   L       N
Sbjct: 179 LQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 61.7 bits (150), Expect = 1e-10
 Identities = 43/224 (19%), Positives = 76/224 (33%), Gaps = 52/224 (23%)

Query: 370 NLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISN 429
            +     ++     L+ ++P ++     +L L  + N L       L     L  L++  
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLPKDTTILHL--SENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 430 NQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLF 489
            +++ ++      L  L  +D S N L  SL         L    ++ N+L+        
Sbjct: 65  AELT-KLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-------- 113

Query: 490 SFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLF-QLQGLEYLNLSFNFLDGQ 548
                                             ++P G    L  L+ L L  N L   
Sbjct: 114 ----------------------------------SLPLGALRGLGELQELYLKGNELKTL 139

Query: 549 VPGLY-RLRSLRALDLSHNSLTGQIPGNI-SSLQELTLLNLSYN 590
            PGL      L  L L++N+LT ++P  + + L+ L  L L  N
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQEN 182

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 42/183 (22%), Positives = 58/183 (31%), Gaps = 17/183 (9%)

Query: 108 LEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNP-- 165
              L LS N             + L  L+L   +   +       L  L  L L  N   
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQ 90

Query: 166 ELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYY-LKSLKHLDLEKNNLT---GNVH 221
            L  +           L  LD SFN     +P      L  L+ L L+ N L      + 
Sbjct: 91  SLPLLGQTLP-----ALTVLDVSFNRL-TSLPLGALRGLGELQELYLKGNELKTLPPGLL 144

Query: 222 DFYQSLLVLNLGSNRFSGTLPCFAASAM-SLTVLKLDNNSVVGGIPTCIASLQALTHLNL 280
                L  L+L +N  +  LP    + + +L  L L  NS+   IP        L    L
Sbjct: 145 TPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFL 202

Query: 281 SHN 283
             N
Sbjct: 203 HGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 44/159 (27%), Positives = 62/159 (38%), Gaps = 20/159 (12%)

Query: 88  NLTDTSLSG---QVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVG 144
            LT  +L             L  L  L LS N     +      L  L  LD+S+N+   
Sbjct: 56  RLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS 114

Query: 145 VVPDAIMKLRNLRELILKGN-----PELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPES 199
           +   A+  L  L+EL LKGN     P   G+           LEKL  + N+   E+P  
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPP--GLLTPTP-----KLEKLSLANNNL-TELPAG 166

Query: 200 LY-YLKSLKHLDLEKNNLTGNVHDFY--QSLLVLNLGSN 235
           L   L++L  L L++N+L      F+    L    L  N
Sbjct: 167 LLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 41/162 (25%), Positives = 51/162 (31%), Gaps = 14/162 (8%)

Query: 130 SGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNP-ELGGVFPGWVGNFSMNLEKLDFS 188
                L LS N         +M    L +L L         V           L  LD S
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLP-----VLGTLDLS 85

Query: 189 FNSFCGEIPESLYYLKSLKHLDLEKNNLTG---NVHDFYQSLLVLNLGSNRFSGTLPCFA 245
            N     +P     L +L  LD+  N LT            L  L L  N    TLP   
Sbjct: 86  HNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGL 143

Query: 246 -ASAMSLTVLKLDNNSVVGGIPTCI-ASLQALTHLNLSHNHL 285
                 L  L L NN++   +P  +   L+ L  L L  N L
Sbjct: 144 LTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 67.0 bits (164), Expect = 2e-12
 Identities = 44/247 (17%), Positives = 84/247 (34%), Gaps = 58/247 (23%)

Query: 344 ITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIV 403
              L +     L     + ++ +    L+ +Q  +  ++ +  S+   +     L  L +
Sbjct: 15  DPGLANAVKQNLGKQS-VTDLVS-QKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHL 70

Query: 404 NNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDA 463
           ++N +S ++ P L  L  L+ L ++ N++     +  A L  L      +N L     D+
Sbjct: 71  SHNQIS-DLSP-LKDLTKLEELSVNRNRLKNLNGIPSACLSRL---FLDNNELRD--TDS 123

Query: 464 ITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHG 523
           +    NL+  SI  NKL                                   +       
Sbjct: 124 LIHLKNLEILSIRNNKLK---------------------------------SIV------ 144

Query: 524 TIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELT 583
                L  L  LE L+L  N +     GL RL+ +  +DL+      +    +    EL 
Sbjct: 145 ----MLGFLSKLEVLDLHGNEIT-NTGGLTRLKKVNWIDLTGQKCVNE---PVKYQPELY 196

Query: 584 LLNLSYN 590
           + N   +
Sbjct: 197 ITNTVKD 203

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 46/260 (17%), Positives = 85/260 (32%), Gaps = 47/260 (18%)

Query: 128 GLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDF 187
           GL+     +L            +  L + +EL                      ++  + 
Sbjct: 17  GLANAVKQNLGKQS--------VTDLVSQKELS--------------------GVQNFNG 48

Query: 188 SFNSFCGEIPESLYYLKSLKHLDLEKNNLT--GNVHDFYQSLLVLNLGSNRFSGTLPCFA 245
             ++   +    + +  +LK L L  N ++    + D    L  L++  NR         
Sbjct: 49  DNSNI--QSLAGMQFFTNLKELHLSHNQISDLSPLKDL-TKLEELSVNRNRLKNLNGI-- 103

Query: 246 ASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLS 305
             +  L+ L LDNN +       +  L+ L  L++ +N L   I   L F  KL +LDL 
Sbjct: 104 -PSACLSRLFLDNNELRD--TDSLIHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLH 158

Query: 306 FNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIP 365
            N++     +     T    +  +DL+  +   E      EL     +   +   I   P
Sbjct: 159 GNEI-----TNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWIS--P 211

Query: 366 ARIGNLTYLQVIDLSHNMLS 385
             I N        +   +  
Sbjct: 212 YYISNGGSYVDGCVLWELPV 231

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 31/137 (22%), Positives = 48/137 (35%), Gaps = 23/137 (16%)

Query: 102 LCKLSFLEFLVLSSNAFTGRIST-CFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELI 160
           L  L+ LE L ++ N    R+        + L  L L  N+      D+++ L+NL  L 
Sbjct: 81  LKDLTKLEELSVNRN----RLKNLNGIPSACLSRLFLDNNELRDT--DSLIHLKNLEILS 134

Query: 161 LKGN-----PELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNN 215
           ++ N       LG +           LE LD   N         L  LK +  +DL    
Sbjct: 135 IRNNKLKSIVMLGFL---------SKLEVLDLHGNEITN--TGGLTRLKKVNWIDLTGQK 183

Query: 216 LTGNVHDFYQSLLVLNL 232
                  +   L + N 
Sbjct: 184 CVNEPVKYQPELYITNT 200

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 67.4 bits (165), Expect = 4e-12
 Identities = 47/337 (13%), Positives = 97/337 (28%), Gaps = 75/337 (22%)

Query: 175 VGNFSMNLEKLDFSFNSF----CGEIPESLYYLKSLKHLDLEKNNLT-------GNVHDF 223
           +  FS  +E      ++        +   L    S+K + L  N +              
Sbjct: 1   MARFS--IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIAS 58

Query: 224 YQSLLVLNLGSNRFSGTLPCFAASAM----------SLTVLKLDNNSV----VGGIPTCI 269
            + L +                 +             L  ++L +N+        +   +
Sbjct: 59  KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFL 118

Query: 270 ASLQALTHLNLSHNHL-------------NYEISPRLVFFEKLLLLDLSFNDLSGPLPSK 316
           +    L HL L +N L                ++ +      L  +    N L      +
Sbjct: 119 SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 178

Query: 317 IAQT-TEKAGLVLLDLSHNRFSGE-IPLKITEL----KSLQALFLSNNLLIGEIPAR--- 367
            A+T      L  + +  N    E I   + E     + L+ L L +N     + +    
Sbjct: 179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALA 237

Query: 368 --IGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKIL 425
             + +   L+ + L+  +LS        G   ++       N+             L+ L
Sbjct: 238 IALKSWPNLRELGLNDCLLSAR------GAAAVVDAFSKLENIG------------LQTL 279

Query: 426 DISNNQISGEIPLTLA-----GLKSLEIVDFSSNNLS 457
            +  N+I  +   TL       +  L  ++ + N  S
Sbjct: 280 RLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 64.0 bits (156), Expect = 6e-11
 Identities = 49/358 (13%), Positives = 102/358 (28%), Gaps = 79/358 (22%)

Query: 108 LEFLVLSSNAFTGR----ISTCFGGLSGLKTLDLSYNKF----VGVVPDAIMKLRNLREL 159
           +E   L  +A T      +         +K + LS N         + + I   ++L   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 160 ILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGN 219
                                   ++          + ++L     L  + L  N     
Sbjct: 66  EFSDI----------------FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109

Query: 220 -VHDFYQ------SLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASL 272
                         L  L L +N         A + ++  + +L  N      P      
Sbjct: 110 AQEPLIDFLSKHTPLEHLYLHNNGLG----PQAGAKIARALQELAVNKKAKNAPP----- 160

Query: 273 QALTHLNLSHNHLNYE----ISPRLVFFEKLLLLDLSFNDLSGP-LPSKIAQTTEK-AGL 326
             L  +    N L        +        L  + +  N +    +   + +       L
Sbjct: 161 --LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL 218

Query: 327 VLLDLSHNRFSGE----IPLKITELKSLQALFLSNNLL-------IGEIPARIGNLTYLQ 375
            +LDL  N F+      + + +    +L+ L L++ LL       + +  +++ N+  LQ
Sbjct: 219 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG-LQ 277

Query: 376 VIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQIS 433
            + L +N       + +     L  +I                   L  L+++ N+ S
Sbjct: 278 TLRLQYN------EIELDAVRTLKTVIDEKM-------------PDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 61.7 bits (150), Expect = 3e-10
 Identities = 50/381 (13%), Positives = 100/381 (26%), Gaps = 106/381 (27%)

Query: 250 SLTVLKLDNNSV----VGGIPTCIASLQALTHLNLSHNHLNYE----ISPRLVFFEKLLL 301
           S+    L  +++       +   +    ++  + LS N +  E    +S  +   + L +
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 302 LDLSFNDLSGPLPSKIAQT--------TEKAGLVLLDLSHNRFSGEIPLKITELKSLQAL 353
            + S     G +  +I +          +   L  + LS N F       + +       
Sbjct: 65  AEFSDIFT-GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLID------- 116

Query: 354 FLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQ 413
           FLS +             T L+ + L +N L            ++   +           
Sbjct: 117 FLSKH-------------TPLEHLYLHNNGLG------PQAGAKIARALQELAVNK---- 153

Query: 414 PELDALDSLKILDISNNQISGE----IPLTLAGLKSLEIVDFSSNNL-----SGSLNDAI 464
            +      L+ +    N++          T    + L  V    N +        L + +
Sbjct: 154 -KAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL 212

Query: 465 TKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGT 524
                LK   +  N  +                                  L+       
Sbjct: 213 AYCQELKVLDLQDNTFT----------------------------HLGSSALA------- 237

Query: 525 IPKGLFQLQGLEYLNLSFNFLD-------GQVPGLYRLRSLRALDLSHNSLTGQIPGNIS 577
               L     L  L L+   L                   L+ L L +N +       + 
Sbjct: 238 --IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK 295

Query: 578 S-----LQELTLLNLSYNSFS 593
           +     + +L  L L+ N FS
Sbjct: 296 TVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 58.6 bits (142), Expect = 3e-09
 Identities = 52/290 (17%), Positives = 89/290 (30%), Gaps = 61/290 (21%)

Query: 102 LCKLSFLEFLVLSSNAFTGR-----------ISTCFGGLSGLKTLDLSYNKF--VGVVP- 147
           +     LE    S   FTGR           +         L T+ LS N F      P 
Sbjct: 56  IASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPL 114

Query: 148 -DAIMKLRNLRELILKGN-----------PELGGVFPGWVGNFSMNLEKLDFSFNSFCGE 195
            D + K   L  L L  N             L  +        +  L  +    N     
Sbjct: 115 IDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG 174

Query: 196 ----IPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSL 251
                 ++    + L  + + +N +     +  + LL+  L   +              L
Sbjct: 175 SMKEWAKTFQSHRLLHTVKMVQNGIR---PEGIEHLLLEGLAYCQ-------------EL 218

Query: 252 TVLKLDNNSV----VGGIPTCIASLQALTHLNLSHNHLNYE----ISPRLVFFE--KLLL 301
            VL L +N+        +   + S   L  L L+   L+      +       E   L  
Sbjct: 219 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQT 278

Query: 302 LDLSFNDLSGPLPSKIAQT--TEKAGLVLLDLSHNRFS--GEIPLKITEL 347
           L L +N++       +      +   L+ L+L+ NRFS   ++  +I E+
Sbjct: 279 LRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREV 328

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 37/264 (14%), Positives = 77/264 (29%), Gaps = 56/264 (21%)

Query: 348 KSLQALFLSNNLL----IGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIV 403
            S++   L  + +       + A +     ++ I LS N +             L   I 
Sbjct: 4   FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIG------TEAARWLSENIA 57

Query: 404 NNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDA 463
           +  +L              +I + S+             L+               L  A
Sbjct: 58  SKKDL--------------EIAEFSDIFTGRVKDEIPEALR--------------LLLQA 89

Query: 464 ITKWTNLKYFSIARNKLSGN----LPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDN 519
           + K   L    ++ N         L ++L     ++ +    N     +    G  ++  
Sbjct: 90  LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG----LGPQAGAKIARA 145

Query: 520 LLHGTIPKGLFQLQGLEYLNLSFNFLDGQ-----VPGLYRLRSLRALDLSHNSLTGQ--- 571
           L    + K       L  +    N L+              R L  + +  N +  +   
Sbjct: 146 LQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIE 205

Query: 572 --IPGNISSLQELTLLNLSYNSFS 593
             +   ++  QEL +L+L  N+F+
Sbjct: 206 HLLLEGLAYCQELKVLDLQDNTFT 229

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 55/278 (19%), Positives = 79/278 (28%), Gaps = 59/278 (21%)

Query: 102 LCKLSFLEFLVLSSNAFTGR----ISTCFGGLSGLKTLDLSYNKF--VGVVPDAIMKLRN 155
           L K   L  + LS NAF       +       + L+ L L  N          A      
Sbjct: 90  LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL 149

Query: 156 LRELILKGNPELGGVFPGW--VGNFSM-----------NLEKLDFSFNSFCGE-----IP 197
                 K  P L  +  G   + N SM            L  +    N    E     + 
Sbjct: 150 AVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL 209

Query: 198 ESLYYLKSLKHLDLEKNNLT-------GNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMS 250
           E L Y + LK LDL+ N  T             + +L  L L     S      A  A +
Sbjct: 210 EGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS------ARGAAA 263

Query: 251 L-TVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLV-----FFEKLLLLDL 304
           +        N               L  L L +N +  +    L          LL L+L
Sbjct: 264 VVDAFSKLENI-------------GLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 310

Query: 305 SFNDLS--GPLPSKIAQTTEKAG-LVLLDLSHNRFSGE 339
           + N  S    +  +I +     G   L +L       +
Sbjct: 311 NGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEELTD 348

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 67.6 bits (164), Expect = 1e-11
 Identities = 92/613 (15%), Positives = 176/613 (28%), Gaps = 175/613 (28%)

Query: 22  LLLFLLLLCSNPSES----LELNLEDKASLLL--FKSLVQDPTQKLSSWVGSNCTNWTGV 75
            L     L S   E     +E  L      L+   K+  + P+     ++      +   
Sbjct: 64  TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123

Query: 76  ACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGL-KT 134
              F   +V  +         ++   L +L   + +++              G+ G  KT
Sbjct: 124 Q-VFAKYNVSRLQPYL-----KLRQALLELRPAKNVLID-------------GVLGSGKT 164

Query: 135 LDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGW--VGNFS------MNLEKLD 186
                      V  A+    + +  +         +F  W  + N +        L+KL 
Sbjct: 165 ----------WV--ALDVCLSYK--VQCKMD--FKIF--WLNLKNCNSPETVLEMLQKLL 206

Query: 187 FSFNSFCGEIPESLYYLKSLKH-LDLEKNNLTGNVHDFYQSLLVL-NLGSNR----FSGT 240
           +  +       +    +K   H +  E   L  +   +   LLVL N+ + +    F+  
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS-KPYENCLLVLLNVQNAKAWNAFN-- 263

Query: 241 LPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLL 300
           L C         +L       V    T   S    TH++L H+ +            K  
Sbjct: 264 LSC--------KILLTTRFKQV----TDFLSAATTTHISLDHHSMTLTPDEVKSLLLK-- 309

Query: 301 LLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLL 360
            LD    D    LP ++  T                    P ++    S+ A  + +   
Sbjct: 310 YLDCRPQD----LPREVLTT-------------------NPRRL----SIIAESIRDG-- 340

Query: 361 IGEIPARIGNLTYLQ------VIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNL------ 408
                A   N  ++       +I+ S N+L    P      F  L++   + ++      
Sbjct: 341 ----LATWDNWKHVNCDKLTTIIESSLNVLE---PAEYRKMFDRLSVFPPSAHIPTILLS 393

Query: 409 -------SGEIQPELDALDSLKILDISNNQISGEIP-------LTLAGLKSL--EIVD-- 450
                    ++   ++ L    +++    + +  IP       + L    +L   IVD  
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453

Query: 451 -----FSSNNLSGSLNDAITKWTNLKYF---------SIARNKLSGNLPNWLFSFQAIQM 496
                F S++L     D        +YF         +I   +           F     
Sbjct: 454 NIPKTFDSDDLIPPYLD--------QYFYSHIGHHLKNIEHPERMTLFRMVFLDF----- 500

Query: 497 MDFSTNKF--MGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEY---LNLSFNFLDGQVPG 551
             F   K        +A G  + + L      K        +Y   +N   +FL      
Sbjct: 501 -RFLEQKIRHDSTAWNASG-SILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN 558

Query: 552 LYRLRSLRALDLS 564
           L   +    L ++
Sbjct: 559 LICSKYTDLLRIA 571

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 1e-06
 Identities = 65/450 (14%), Positives = 124/450 (27%), Gaps = 166/450 (36%)

Query: 7   LNVHSCRALKLQMLPLLLFLLLLCSN------PSESLELNLEDKASLL--LFKS------ 52
           LN+ +C + +  +  L   L  +  N       S +++L +    + L  L KS      
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 53  -LVQDPTQKLSSWVGSNCTNWT--GVACNFQTGHVV---SINLTDTSLSGQVHPRLCKLS 106
            LV    Q  ++        W    ++C  +   ++      +TD  LS      +    
Sbjct: 247 LLVLLNVQ--NAKA------WNAFNLSC--KI--LLTTRFKQVTD-FLSAATTTHIS--- 290

Query: 107 FLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPE 166
               L   S   T             +   L   K++        + ++L   +L  NP 
Sbjct: 291 ----LDHHSMTLTPD-----------EVKSL-LLKYLD------CRPQDLPREVLTTNPR 328

Query: 167 LGGVFPG--------WVGNFS-MNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLT 217
              +           W  N+  +N +KL          I ES     SL  L+       
Sbjct: 329 RLSIIAESIRDGLATW-DNWKHVNCDKLT--------TIIES-----SLNVLE------P 368

Query: 218 GNVHDFYQSLLVLNLGSNRFSGTLPCF------------AASAMSLTVLKLDNNSVVGGI 265
                 +  L V    ++  +  L                      ++++         I
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428

Query: 266 PTCIASLQA------------LTHLNL-----------------SHNHLNY-----EISP 291
           P+    L+             + H N+                  ++H+ +     E   
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488

Query: 292 RLVFFEKLLLLDLSFNDLSGPLPSKIAQTT----EKAGL--VLLDL---------SHNRF 336
           R+  F   + LD  F      L  KI   +        +   L  L         +  ++
Sbjct: 489 RMTLFRM-VFLDFRF------LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541

Query: 337 SGEIPLKITELKSLQALFLSN---NLLIGE 363
                  +  +      FL     NL+  +
Sbjct: 542 ER----LVNAILD----FLPKIEENLICSK 563

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 63.1 bits (154), Expect = 5e-11
 Identities = 55/186 (29%), Positives = 74/186 (39%), Gaps = 19/186 (10%)

Query: 108 LEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN--- 164
            + L L SN  +   S  F  L+ L+ L L+ NK   +      +L+NL  L +  N   
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ 98

Query: 165 --PELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYY-LKSLKHLDLEKNNLT---G 218
             P   GVF   V     NL +L    N     +P  ++  L  L +L L  N L     
Sbjct: 99  ALPI--GVFDQLV-----NLAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNELQSLPK 150

Query: 219 NVHDFYQSLLVLNLGSNRFSGTLPCFA-ASAMSLTVLKLDNNSVVGGIPTCIASLQALTH 277
            V D   SL  L L +N+    +P  A      L  LKLDNN +         SL+ L  
Sbjct: 151 GVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKM 209

Query: 278 LNLSHN 283
           L L  N
Sbjct: 210 LQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 61.1 bits (149), Expect = 2e-10
 Identities = 49/189 (25%), Positives = 77/189 (40%), Gaps = 20/189 (10%)

Query: 421 SLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKL 480
             K LD+ +N++S         L  L ++  + N L         +  NL+   +  NKL
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97

Query: 481 SGNLPNWLFSF-QAIQMMDFSTNKFMGFIPDAV--------GMDLSDNLLHGTIPKGLF- 530
              LP  +F     +  +    N+    +P  V         + L  N L  ++PKG+F 
Sbjct: 98  Q-ALPIGVFDQLVNLAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFD 154

Query: 531 QLQGLEYLNLSFNFLDGQVPGLY-RLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSY 589
           +L  L+ L L  N L     G + +L  L+ L L +N L     G   SL++L +L L  
Sbjct: 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214

Query: 590 NSFSGFVPW 598
           N      PW
Sbjct: 215 N------PW 217

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 54/204 (26%), Positives = 86/204 (42%), Gaps = 27/204 (13%)

Query: 260 SVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVF--FEKLLLLDLSFNDLSGPLPSKI 317
           ++   IP           L+L  N L+  +  +  F    KL LL L+ N L   LP+ I
Sbjct: 30  AIPSNIPA------DTKKLDLQSNKLS-SLPSK-AFHRLTKLRLLYLNDNKLQT-LPAGI 80

Query: 318 -AQTTEKAGLVLLDLSHNRFSGEIPLKI-TELKSLQALFLSNNLLIGEIPARI-GNLTYL 374
             +      L  L ++ N+    +P+ +  +L +L  L L  N  +  +P R+  +LT L
Sbjct: 81  FKELKN---LETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKL 135

Query: 375 QVIDLSHNMLSGSIPLNIVGCF----QLLALIVNNNNLSGEIQPELDALDSLKILDISNN 430
             + L +N L  S+P    G F     L  L + NN L    +   D L  LK L + NN
Sbjct: 136 TYLSLGYNELQ-SLP---KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191

Query: 431 QISGEIPLTLAGLKSLEIVDFSSN 454
           Q+          L+ L+++    N
Sbjct: 192 QLKRVPEGAFDSLEKLKMLQLQEN 215

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 60.9 bits (148), Expect = 9e-11
 Identities = 34/131 (25%), Positives = 65/131 (49%), Gaps = 9/131 (6%)

Query: 326 LVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLS 385
            V L         ++   ++ LK+ + L LS N  I +I + +  +  L+++ L  N++ 
Sbjct: 27  KVELHGMIPPIE-KMDATLSTLKACKHLALSTNN-IEKI-SSLSGMENLRILSLGRNLIK 83

Query: 386 GSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQIS--GEIPLTLAGL 443
               L+ V    L  L ++ N ++  +   ++ L +L++L +SNN+I+  GEI   LA L
Sbjct: 84  KIENLDAV-ADTLEELWISYNQIA-SLSG-IEKLVNLRVLYMSNNKITNWGEI-DKLAAL 139

Query: 444 KSLEIVDFSSN 454
             LE +  + N
Sbjct: 140 DKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 525 IPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTL 584
           +   L  L+  ++L LS N ++ ++  L  + +LR L L  N +  +I    +    L  
Sbjct: 40  MDATLSTLKACKHLALSTNNIE-KISSLSGMENLRILSLGRNLIK-KIENLDAVADTLEE 97

Query: 585 LNLSYN 590
           L +SYN
Sbjct: 98  LWISYN 103

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 34/181 (18%), Positives = 63/181 (34%), Gaps = 49/181 (27%)

Query: 397 QLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNL 456
           + + L      +  ++   L  L + K L +S N I  +I  +L+G+++L I+    N +
Sbjct: 26  EKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLI 82

Query: 457 SGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDL 516
              + +       L+   I+ N+++                                  L
Sbjct: 83  K-KIENLDAVADTLEELWISYNQIA---------------------------------SL 108

Query: 517 SDNLLHGTIPKGLFQLQGLEYLNLSFNFLD--GQVPGLYRLRSLRALDLSHNSLTGQIPG 574
           S          G+ +L  L  L +S N +   G++  L  L  L  L L+ N L      
Sbjct: 109 S----------GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158

Query: 575 N 575
           N
Sbjct: 159 N 159

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 12/129 (9%)

Query: 184 KLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLT--GNVHDFYQSLLVLNLGSNRFSGTL 241
           +L         ++  +L  LK+ KHL L  NN+    ++    ++L +L+LG N     +
Sbjct: 29  ELHGMIPPI-EKMDATLSTLKACKHLALSTNNIEKISSLSGM-ENLRILSLGRNLIK-KI 85

Query: 242 PCFAASAMSLTVLKLDNN--SVVGGIPTCIASLQALTHLNLSHNHL-NYEISPRLVFFEK 298
               A A +L  L +  N  + + G    I  L  L  L +S+N + N+    +L   +K
Sbjct: 86  ENLDAVADTLEELWISYNQIASLSG----IEKLVNLRVLYMSNNKITNWGEIDKLAALDK 141

Query: 299 LLLLDLSFN 307
           L  L L+ N
Sbjct: 142 LEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.1 bits (94), Expect = 8e-04
 Identities = 27/122 (22%), Positives = 45/122 (36%), Gaps = 17/122 (13%)

Query: 121 RISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN--PELGGVFPGWVGNF 178
           ++      L   K L LS N    +   ++  + NLR L L  N   ++  +        
Sbjct: 39  KMDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIKKIENLD-----AV 91

Query: 179 SMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDF-----YQSLLVLNLG 233
           +  LE+L  S+N         +  L +L+ L +  N +T N  +         L  L L 
Sbjct: 92  ADTLEELWISYNQI--ASLSGIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLA 148

Query: 234 SN 235
            N
Sbjct: 149 GN 150

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 61/353 (17%), Positives = 120/353 (33%), Gaps = 70/353 (19%)

Query: 130 SGLKTLDLSYNKF----VGVVPDAIMKLR-NLRELILKGN---PELGGVFPGWVGNFSMN 181
            G+ +LDLS N         +  A      ++  L L GN    +        +     N
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81

Query: 182 LEKLDFSFNSF----CGEIPESLYYLK-SLKHLDLEKNNLTGN--------VHDFYQSLL 228
           +  L+ S N        E+ ++L  +  ++  LDL  N+ +            +   S+ 
Sbjct: 82  VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141

Query: 229 VLNLGSNRFSGTLPCFAASAMSL-TVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNY 287
            LNL  N           S+  L  +L     +              +  LNL  N+L  
Sbjct: 142 SLNLRGNDLG------IKSSDELIQILAAIPAN--------------VNSLNLRGNNLAS 181

Query: 288 E----ISPRLVFF-EKLLLLDLSFNDLSGPLPSKIAQ--TTEKAGLVLLDLSHNRFSGE- 339
           +    ++  L      +  LDLS N L     +++A   ++    +V L+L  N   G  
Sbjct: 182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241

Query: 340 ---IPLKITELKSLQALFLSNNLL--IGEIPAR-----IGNLTYLQVIDLSHNMLSGSIP 389
              + L    LK LQ ++L  +++  + +   +       N+  + ++D +   +  S  
Sbjct: 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301

Query: 390 LNIVGCFQLLALIVNNNNLSGEIQPELDAL----------DSLKILDISNNQI 432
           + I    + L+   +  +L  +                  D L+    +   +
Sbjct: 302 IPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 50.9 bits (122), Expect = 7e-07
 Identities = 51/365 (13%), Positives = 110/365 (30%), Gaps = 71/365 (19%)

Query: 269 IASLQALTHLNLSHNHLNYEISPRLVF-----FEKLLLLDLSFNDLSGPLPSKIAQ--TT 321
            +    +T L+LS N+L    +  L+         +  L+LS N L      ++ Q    
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 322 EKAGLVLLDLSHNRFSGEIPLKITEL-----KSLQALFLSNNLLIGE-----IPARIGNL 371
             A +  L+LS N  S +   ++ +       ++  L L  N    +       A     
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137

Query: 372 TYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQ 431
             +  ++L  N L            +L+ ++                  ++  L++  N 
Sbjct: 138 ASITSLNLRGNDLGIK------SSDELIQILAAIPA-------------NVNSLNLRGNN 178

Query: 432 ISGEIPLTLAGL-----KSLEIVDFSSNNLSGS----LNDAITK-WTNLKYFSIARNKLS 481
           ++ +    LA        S+  +D S+N L       L    +    ++   ++  N L 
Sbjct: 179 LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238

Query: 482 G----NLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEY 537
           G    NL     S + +Q +    +         +  +    L           +Q +  
Sbjct: 239 GPSLENLKLLKDSLKHLQTVYLDYDIV-----KNMSKEQCKALG-----AAFPNIQKIIL 288

Query: 538 LNLSFNFL-DGQVPGLYRL-----RSLRALDLSHNSLT-----GQIPGNISSLQELTLLN 586
           ++ +   +       +  L            L +  L           +++   EL    
Sbjct: 289 VDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESI 348

Query: 587 LSYNS 591
            +   
Sbjct: 349 QTCKP 353

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 68/410 (16%), Positives = 122/410 (29%), Gaps = 100/410 (24%)

Query: 193 CGEIPESLYYLKSLKHLDLEKNNLTGN--------VHDFYQSLLVLNLGSNRFSGTLPCF 244
              + E       +  LDL  NNL             +   S+  LNL  N         
Sbjct: 11  SNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG------ 64

Query: 245 AASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFF-----EKL 299
             ++  L  +     +              +T LNLS N L+Y+ S  LV         +
Sbjct: 65  FKNSDELVQILAAIPA-------------NVTSLNLSGNFLSYKSSDELVKTLAAIPFTI 111

Query: 300 LLLDLSFNDLSGPLPSKIAQ--TTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSN 357
            +LDL +ND S    S+  Q  +   A +  L+L  N    +          L  +  + 
Sbjct: 112 TVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK------SSDELIQILAAI 165

Query: 358 NLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELD 417
                           +  ++L  N L+         C +L   + +             
Sbjct: 166 P-------------ANVNSLNLRGNNLASK------NCAELAKFLASIPA---------- 196

Query: 418 ALDSLKILDISNNQISGEIPLTLA-GLKS----LEIVDFSSNNLSGS----LNDAITKWT 468
              S+  LD+S N +  +    LA    S    +  ++   N L G     L        
Sbjct: 197 ---SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLK 253

Query: 469 NLKYFSIARNKLSG-------NLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLL 521
           +L+   +  + +          L     + Q I ++D +  +    I  +  + +S+ + 
Sbjct: 254 HLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE----IHPSHSIPISNLIR 309

Query: 522 HGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRL---RSLRALDLSHNSL 568
             +      +      LN    F       +  L     LR    +   L
Sbjct: 310 ELS-----GKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 40/222 (18%), Positives = 69/222 (31%), Gaps = 45/222 (20%)

Query: 108 LEFLVLSSNAFTGRISTCFGGL-----SGLKTLDLSYNKF----VGVVPDAIMKL-RNLR 157
           +  L LS N  + + S             +  LDL +N F          A   L  ++ 
Sbjct: 82  VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141

Query: 158 ELILKGN-------PELGGVFPGWVGNFSMNLEKLDFSFNSF----CGEIPESLYYL-KS 205
            L L+GN        EL  +          N+  L+   N+     C E+ + L  +  S
Sbjct: 142 SLNLRGNDLGIKSSDELIQILA----AIPANVNSLNLRGNNLASKNCAELAKFLASIPAS 197

Query: 206 LKHLDLEKNNLTGN--------VHDFYQSLLVLNLGSNRFSGTLPCFAASAM----SLTV 253
           +  LDL  N L                  ++ LNL  N   G               L  
Sbjct: 198 VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT 257

Query: 254 LKLDNNSV-------VGGIPTCIASLQALTHLNLSHNHLNYE 288
           + LD + V          +     ++Q +  ++ +   ++  
Sbjct: 258 VYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.7 bits (131), Expect = 4e-08
 Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 2/101 (1%)

Query: 381 HNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPE-LDALDSLKILDISNNQISGEIPLT 439
               +     ++ G   L  L + N      ++   L  L  L+ L I  + +    P  
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 440 LAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKL 480
                 L  ++ S N L  SL+    +  +L+   ++ N L
Sbjct: 76  FHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.0 bits (129), Expect = 8e-08
 Identities = 19/94 (20%), Positives = 30/94 (31%), Gaps = 3/94 (3%)

Query: 146 VPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKS 205
               +    NL EL ++    L  +    +      L  L    +      P++ ++   
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLG-ELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 206 LKHLDLEKNNLTGNVHDFYQ--SLLVLNLGSNRF 237
           L  L+L  N L        Q  SL  L L  N  
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 51.7 bits (123), Expect = 4e-07
 Identities = 16/100 (16%), Positives = 39/100 (39%), Gaps = 4/100 (4%)

Query: 333 HNRFSGEIPLKITELKSLQALFLSNNLLIGEIPAR-IGNLTYLQVIDLSHNMLSGSIPLN 391
               + +    +   ++L  L++ N   +  +  R +  L  L+ + +  + L   +  +
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPD 74

Query: 392 I-VGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNN 430
                 +L  L ++ N L   +  +     SL+ L +S N
Sbjct: 75  AFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.4 bits (112), Expect = 8e-06
 Identities = 24/125 (19%), Positives = 37/125 (29%), Gaps = 17/125 (13%)

Query: 69  CTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRI-STCFG 127
               +G+ C             D          L     L  L + +      +      
Sbjct: 7   PHGSSGLRCTRD-------GALD------SLHHLPGAENLTELYIENQQHLQHLELRDLR 53

Query: 128 GLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDF 187
           GL  L+ L +  +    V PDA      L  L L  N  L  +    V    ++L++L  
Sbjct: 54  GLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKTV--QGLSLQELVL 110

Query: 188 SFNSF 192
           S N  
Sbjct: 111 SGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.5 bits (107), Expect = 4e-05
 Identities = 21/111 (18%), Positives = 32/111 (28%), Gaps = 13/111 (11%)

Query: 519 NLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG--LYRLRSLRALDLSHNSLTGQIPGNI 576
                     L   + L  L +        +    L  L  LR L +  + L    P   
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76

Query: 577 SSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNP--NLCLESSHGECN 625
                L+ LNLS+N+    + W            G     L L  +   C+
Sbjct: 77  HFTPRLSRLNLSFNALE-SLSW--------KTVQGLSLQELVLSGNPLHCS 118

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.0 bits (103), Expect = 1e-04
 Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 7/97 (7%)

Query: 195 EIPESLYYLKSLKHLDLEKNNLTGNVHDF----YQSLLVLNLGSNRFSGTLPCFAASAM- 249
           +    L   ++L  L +E      ++          L  L +  +     +   A     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 250 SLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLN 286
            L+ L L  N++       +  L  L  L LS N L+
Sbjct: 81  RLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.0 bits (103), Expect = 1e-04
 Identities = 22/111 (19%), Positives = 36/111 (32%), Gaps = 3/111 (2%)

Query: 395 CFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPL-TLAGLKSLEIVDFSS 453
                 L    +    +    L   ++L  L I N Q    + L  L GL  L  +    
Sbjct: 7   PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 454 NNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKF 504
           + L     DA      L   +++ N L  +L        ++Q +  S N  
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.4 bits (99), Expect = 3e-04
 Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 3/80 (3%)

Query: 515 DLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQI 572
            + +      +     + L  L  L +  + L    P   +    L  L+LS N+L    
Sbjct: 37  YIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS 96

Query: 573 PGNISSLQELTLLNLSYNSF 592
              +  L  L  L LS N  
Sbjct: 97  WKTVQGLS-LQELVLSGNPL 115

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 12/145 (8%)

Query: 314 PSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI-TELKSLQALFLSNNLLIGEIPARI-GNL 371
           P  I Q T +     L L++N F+      I  +L  L+ +  SNN  I +I        
Sbjct: 27  PEHIPQYTAE-----LRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGA 80

Query: 372 TYLQVIDLSHNMLSGSIPLNI-VGCFQLLALIVNNNNLSGEIQPEL-DALDSLKILDISN 429
           + +  I L+ N L  ++   +  G   L  L++ +N ++  +  +    L S+++L + +
Sbjct: 81  SGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYD 138

Query: 430 NQISGEIPLTLAGLKSLEIVDFSSN 454
           NQI+   P     L SL  ++  +N
Sbjct: 139 NQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 49.7 bits (119), Expect = 7e-07
 Identities = 35/134 (26%), Positives = 54/134 (40%), Gaps = 16/134 (11%)

Query: 111 LVLSSNAFTGRIST-CFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPEL-- 167
           L L++N FT   +T  F  L  L+ ++ S NK   +   A      + E++L  N  L  
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN-RLEN 95

Query: 168 --GGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYY-LKSLKHLDLEKNNLTGNVH--- 221
               +F G       +L+ L    N     +    +  L S++ L L  N +T       
Sbjct: 96  VQHKMFKGLE-----SLKTLMLRSNRI-TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF 149

Query: 222 DFYQSLLVLNLGSN 235
           D   SL  LNL +N
Sbjct: 150 DTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 2/78 (2%)

Query: 515 DLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQI 572
            L++N        G+F+ L  L  +N S N +     G       +  + L+ N L    
Sbjct: 38  RLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQ 97

Query: 573 PGNISSLQELTLLNLSYN 590
                 L+ L  L L  N
Sbjct: 98  HKMFKGLESLKTLMLRSN 115

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 12/103 (11%)

Query: 515 DLSDNLLHGTIPKGLF-QLQGLEYLNLSFNFLDGQVPGL-YRLRSLRALDLSHNSLTGQI 572
           + S+N +   I +G F    G+  + L+ N L+     +   L SL+ L L  N +T   
Sbjct: 63  NFSNNKIT-DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVG 121

Query: 573 PGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNL 615
             +   L  + LL+L  N  +  V         PGAF    +L
Sbjct: 122 NDSFIGLSSVRLLSLYDNQIT-TVA--------PGAFDTLHSL 155

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 22/122 (18%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 363 EIPARIGNLTYLQVIDLSHNMLSGSIPLNIV--GCFQLLALIVNNNNLSGEIQPE-LDAL 419
           +IP  I    Y   + L++N  +  +    +     QL  +  +NN ++ +I+    +  
Sbjct: 25  KIPEHIP--QYTAELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGA 80

Query: 420 DSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNK 479
             +  + +++N++         GL+SL+ +   SN ++   ND+    ++++  S+  N+
Sbjct: 81  SGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ 140

Query: 480 LS 481
           ++
Sbjct: 141 IT 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 20/61 (32%), Positives = 29/61 (47%)

Query: 104 KLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKG 163
             S +  ++L+SN         F GL  LKTL L  N+   V  D+ + L ++R L L  
Sbjct: 79  GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD 138

Query: 164 N 164
           N
Sbjct: 139 N 139

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 3/80 (3%)

Query: 515 DLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDGQVPGLY-RLRSLRALDLSHNSLTGQI 572
            L+ N L   +   +F+ L+ L+ L L  N +       +  L S+R L L  N +T   
Sbjct: 87  LLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA 145

Query: 573 PGNISSLQELTLLNLSYNSF 592
           PG   +L  L+ LNL  N F
Sbjct: 146 PGAFDTLHSLSTLNLLANPF 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 32/134 (23%), Positives = 52/134 (38%), Gaps = 17/134 (12%)

Query: 111 LVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN-----P 165
           + L  N         F     L+ +DLS N+   + PDA   LR+L  L+L GN     P
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP 96

Query: 166 ELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLY-YLKSLKHLDLEKNNLTGNVH--- 221
           +   +F G       +L+ L  + N     +    +  L +L  L L  N L        
Sbjct: 97  K--SLFEGLF-----SLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148

Query: 222 DFYQSLLVLNLGSN 235
              +++  ++L  N
Sbjct: 149 SPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 49.6 bits (119), Expect = 6e-07
 Identities = 32/136 (23%), Positives = 63/136 (46%), Gaps = 9/136 (6%)

Query: 250 SLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVF--FEKLLLLDLSFN 307
           ++T ++L+ N++    P   +  + L  ++LS+N ++ E++P   F     L  L L  N
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPD-AFQGLRSLNSLVLYGN 90

Query: 308 DLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI-TELKSLQALFLSNNLLIGEIPA 366
            ++  LP  + +      L LL L+ N+ +  + +    +L +L  L L +N L      
Sbjct: 91  KITE-LPKSLFEGLFS--LQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKG 146

Query: 367 RIGNLTYLQVIDLSHN 382
               L  +Q + L+ N
Sbjct: 147 TFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 25/103 (24%), Positives = 37/103 (35%), Gaps = 12/103 (11%)

Query: 515 DLSDNLLHGTIPKGLF-QLQGLEYLNLSFNFLDGQVPGL-YRLRSLRALDLSHNSLTGQI 572
           DLS+N +   +    F  L+ L  L L  N +      L   L SL+ L L+ N +    
Sbjct: 62  DLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLR 120

Query: 573 PGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNL 615
                 L  L LL+L  N     +          G F+    +
Sbjct: 121 VDAFQDLHNLNLLSLYDNKLQ-TIA--------KGTFSPLRAI 154

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 4/86 (4%)

Query: 508 IP-DAVGMDLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDGQVPGL-YRLRSLRALDLS 564
           +P     + L  N +   IP G F   + L  ++LS N +    P     LRSL +L L 
Sbjct: 30  LPETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88

Query: 565 HNSLTGQIPGNISSLQELTLLNLSYN 590
            N +T         L  L LL L+ N
Sbjct: 89  GNKITELPKSLFEGLFSLQLLLLNAN 114

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 31/137 (22%), Positives = 51/137 (37%), Gaps = 19/137 (13%)

Query: 133 KTLDLSYNKFVGVVPDAIMKLRNLRELILKGN-----PELGGVFPGWVGNFSMNLEKLDF 187
             + L  N    + P A    + LR + L  N           F G       +L  L  
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAP--DAFQGLR-----SLNSLVL 87

Query: 188 SFNSFCGEIPESLYY-LKSLKHLDLEKNNLTG---NVHDFYQSLLVLNLGSNRFSGTLPC 243
             N    E+P+SL+  L SL+ L L  N +     +      +L +L+L  N+   T+  
Sbjct: 88  YGNKI-TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAK 145

Query: 244 FAASAM-SLTVLKLDNN 259
              S + ++  + L  N
Sbjct: 146 GTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.2 bits (110), Expect = 9e-06
 Identities = 34/143 (23%), Positives = 53/143 (37%), Gaps = 27/143 (18%)

Query: 349 SLQALFLSNNLLIGEIPARI-GNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNN 407
           ++  + L  N  I  IP         L+ IDLS+N +S  +       F           
Sbjct: 33  TITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQIS-ELA---PDAF----------- 76

Query: 408 LSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKW 467
                      L SL  L +  N+I+        GL SL+++  ++N ++    DA    
Sbjct: 77  ---------QGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDL 127

Query: 468 TNLKYFSIARNKLSGNLPNWLFS 490
            NL   S+  NKL   +    FS
Sbjct: 128 HNLNLLSLYDNKLQ-TIAKGTFS 149

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 35/180 (19%), Positives = 61/180 (33%), Gaps = 50/180 (27%)

Query: 421 SLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKL 480
           ++  + +  N I    P   +  K L  +D S+N +S    DA     +L    +  NK+
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92

Query: 481 SGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQ-LQGLEYLN 539
           +                                           +PK LF+ L  L+ L 
Sbjct: 93  T------------------------------------------ELPKSLFEGLFSLQLLL 110

Query: 540 LSFNFLDGQVPGLY-RLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPW 598
           L+ N ++      +  L +L  L L  N L     G  S L+ +  ++L+ N      P+
Sbjct: 111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN------PF 164

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 53.0 bits (126), Expect = 2e-07
 Identities = 28/211 (13%), Positives = 64/211 (30%), Gaps = 37/211 (17%)

Query: 218 GNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIAS--LQAL 275
            ++     ++ +LN    + +  L        +L  L++ +  +   +   I    L  L
Sbjct: 162 VDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNL 221

Query: 276 THLNLSHNHLNY-------EISPRLVF--FEKLLLLDLSFNDLSGPLPSKIAQTTEKAGL 326
             L L     +Y          P      F  L  L +   +    +     ++     L
Sbjct: 222 EKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQL 281

Query: 327 VLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSG 386
             +D+S    + E           + L              +  + +L+ I++ +N LS 
Sbjct: 282 ETMDISAGVLTDE---------GARLLL-----------DHVDKIKHLKFINMKYNYLSD 321

Query: 387 SIPLNIVGCFQLLALIVNNNNLSGEIQPELD 417
                     +L   +    ++S   + + D
Sbjct: 322 E------MKKELQKSLPMKIDVSDSQEYDDD 346

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.4 bits (101), Expect = 2e-04
 Identities = 30/170 (17%), Positives = 63/170 (37%), Gaps = 17/170 (10%)

Query: 410 GEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTN 469
            ++ P LDA+  L  L I               LKSLEI+     + S   +   +   N
Sbjct: 162 VDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPD-SVVEDILGSDLPN 220

Query: 470 LKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGL 529
           L+        L   + ++ F      M  F         P+   + + D      + +  
Sbjct: 221 LEKL-----VLYVGVEDYGFD---GDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMF 272

Query: 530 FQ---LQGLEYLNLSFNFLDGQ-----VPGLYRLRSLRALDLSHNSLTGQ 571
            +   L  LE +++S   L  +     +  + +++ L+ +++ +N L+ +
Sbjct: 273 LESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.1 bits (95), Expect = 8e-04
 Identities = 27/144 (18%), Positives = 53/144 (36%), Gaps = 22/144 (15%)

Query: 90  TDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGG--LSGLKTLDLSYNK----FV 143
            + S+  +  P L      + L + S      +     G  L  L+ L L        F 
Sbjct: 183 NNLSIGKKPRPNL------KSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFD 236

Query: 144 GVVPD-----AIMKLRNLRELILKGNPELGGVFPGWVGNFSM-NLEKLDFSFNSFCGE-- 195
           G +       +  +  NL+ L +    E   V   ++ +  +  LE +D S      E  
Sbjct: 237 GDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA 296

Query: 196 --IPESLYYLKSLKHLDLEKNNLT 217
             + + +  +K LK ++++ N L+
Sbjct: 297 RLLLDHVDKIKHLKFINMKYNYLS 320

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 52.6 bits (126), Expect = 3e-07
 Identities = 67/408 (16%), Positives = 126/408 (30%), Gaps = 60/408 (14%)

Query: 88  NLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKF--VGV 145
           NL    L G+    +  L    +    +      ++     L  LK++         + +
Sbjct: 74  NLRSLKLKGKPRAAMFNLIPENWGGYVTPW----VTEISNNLRQLKSVHFRRMIVSDLDL 129

Query: 146 VPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYL-- 203
              A  +  +L  L L             +      ++ L    +SF  +  + L+ L  
Sbjct: 130 DRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189

Query: 204 --KSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSV 261
              SL+ L+         +                    L   A +  SL  +K+ +  +
Sbjct: 190 HNTSLEVLNFYMTEFA-KISP----------------KDLETIARNCRSLVSVKVGDFEI 232

Query: 262 V--GGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSF-NDLSGPLPSKIA 318
           +   G     A+L+     +L+ +    E    LVF  KL  L LS+      P+    A
Sbjct: 233 LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFA 292

Query: 319 QTTEKAGLVLLDLSHNRFSGEIPLK-ITELKSLQALFLSNNLLIGEIPARIGNLTYLQVI 377
                  +  LDL +     E     I +  +L+ L   N +    +         L+ +
Sbjct: 293 A-----QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL 347

Query: 378 DLSHNMLSGSIPLNIV------------GCFQLLALIVNNNNLSGE----IQPELDALDS 421
            +        +                 GC +L  + V  ++++ E    I   L  L  
Sbjct: 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCD 407

Query: 422 LKILDISNNQISGEIPLT------LAGLKSLEIVDFSSNNLSGSLNDA 463
            +++ +   +   ++PL       L G K L    F      G L D 
Sbjct: 408 FRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR--QGGLTDL 453

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 50.1 bits (120), Expect = 7e-07
 Identities = 41/160 (25%), Positives = 54/160 (33%), Gaps = 17/160 (10%)

Query: 109 EFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN---- 164
           E L L S          F GL+ L  L+L YN+   +       L  L  L L  N    
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97

Query: 165 -PELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLY-YLKSLKHLDLEKNNLT---GN 219
            P   GVF          L+KL    N     +P  ++  L  LK L L  N L      
Sbjct: 98  LPL--GVFDHLT-----QLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQLQSIPAG 149

Query: 220 VHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNN 259
             D   +L  L+L +N+              L  + L  N
Sbjct: 150 AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 39/179 (21%), Positives = 67/179 (37%), Gaps = 28/179 (15%)

Query: 423 KILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSG 482
           + LD+ +  ++     T  GL  L  ++   N L           T L    +A N+L+ 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA- 96

Query: 483 NLPNWLF-SFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLF-QLQGLEYLNL 540
           +LP  +F     +  +    N+                    ++P G+F +L  L+ L L
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQLK------------------SLPSGVFDRLTKLKELRL 138

Query: 541 SFNFLDGQVPGLY-RLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPW 598
           + N L     G + +L +L+ L LS N L     G    L +L  + L  N       +
Sbjct: 139 NTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN------QF 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 46/160 (28%), Positives = 63/160 (39%), Gaps = 12/160 (7%)

Query: 252 TVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFE--KLLLLDLSFNDL 309
             L L +  +          L  LT LNL +N L  +     VF +  +L  L L+ N L
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL--QTLSAGVFDDLTELGTLGLANNQL 95

Query: 310 SGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI-TELKSLQALFLSNNLLIGEIPARI 368
           +  LP  +     +  L  L L  N+    +P  +   L  L+ L L+ N L   IPA  
Sbjct: 96  AS-LPLGVFDHLTQ--LDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQL-QSIPAGA 150

Query: 369 -GNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNN 407
              LT LQ + LS N L  S+P         L  I    N
Sbjct: 151 FDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 43/161 (26%), Positives = 66/161 (40%), Gaps = 19/161 (11%)

Query: 302 LDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI-TELKSLQALFLSNNLL 360
           LDL    L+    +     T+   L  L+L +N+    +   +  +L  L  L L+NN L
Sbjct: 40  LDLQSTGLATLSDATFRGLTK---LTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQL 95

Query: 361 IGEIPARI-GNLTYLQVIDLSHNMLSGSIPLNIVGCF----QLLALIVNNNNLSGEIQPE 415
              +P  +  +LT L  + L  N L  S+P    G F    +L  L +N N L     P 
Sbjct: 96  -ASLPLGVFDHLTQLDKLYLGGNQLK-SLP---SGVFDRLTKLKELRLNTNQLQS--IPA 148

Query: 416 --LDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSN 454
              D L +L+ L +S NQ+          L  L+ +    N
Sbjct: 149 GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 47/157 (29%), Positives = 60/157 (38%), Gaps = 11/157 (7%)

Query: 230 LNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEI 289
           L+L S   +            LT L LD N +          L  L  L L++N L    
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL--AS 97

Query: 290 SPRLVF--FEKLLLLDLSFNDLSGPLPSKI-AQTTEKAGLVLLDLSHNRFSGEIPLKI-T 345
            P  VF    +L  L L  N L   LPS +  + T+   L  L L+ N+    IP     
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTK---LKELRLNTNQLQ-SIPAGAFD 152

Query: 346 ELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHN 382
           +L +LQ L LS N L          L  LQ I L  N
Sbjct: 153 KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 8/128 (6%)

Query: 353 LFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEI 412
           + L+  L I +   +  N    + +DL    +     L      Q  A+  ++N +  ++
Sbjct: 2   VKLTAEL-IEQAA-QYTNAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIR-KL 57

Query: 413 QPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLND--AITKWTNL 470
                 L  LK L ++NN+I          L  L  +  ++N+L   L D   +    +L
Sbjct: 58  DG-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSL 115

Query: 471 KYFSIARN 478
            Y  I RN
Sbjct: 116 TYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 15/106 (14%), Positives = 38/106 (35%), Gaps = 5/106 (4%)

Query: 376 VIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGE 435
           ++ L+  ++  +         +   L +    +   I+     LD    +D S+N+I  +
Sbjct: 1   MVKLTAELIEQA--AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-K 56

Query: 436 IPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLS 481
           +      L+ L+ +  ++N +            +L    +  N L 
Sbjct: 57  LD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 22/116 (18%), Positives = 37/116 (31%), Gaps = 11/116 (9%)

Query: 198 ESLYYLKSLKHLDLEKNNLT--GNVHDFYQSLLVLNLGSNRFS--GTLPCFAASAMSLTV 253
                    + LDL    +    N+         ++   N        P        L  
Sbjct: 13  AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLL----RRLKT 68

Query: 254 LKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNY--EISPRLVFFEKLLLLDLSFN 307
           L ++NN +         +L  LT L L++N L    ++ P L   + L  L +  N
Sbjct: 69  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDP-LASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 2/79 (2%)

Query: 515 DLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPG 574
           DL    +   I      L   + ++ S N +  ++ G   LR L+ L +++N +     G
Sbjct: 25  DLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLDGFPLLRRLKTLLVNNNRICRIGEG 82

Query: 575 NISSLQELTLLNLSYNSFS 593
              +L +LT L L+ NS  
Sbjct: 83  LDQALPDLTELILTNNSLV 101

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 62/474 (13%), Positives = 140/474 (29%), Gaps = 50/474 (10%)

Query: 24  LFLLLLCSNPSESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSNCTNWTGVACNFQTGH 83
           +    +     +   + L+ K     F  +       +  W+ +  +++T +    +   
Sbjct: 56  VSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWL----EEIR 111

Query: 84  VVSINLTDTSLS--GQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNK 141
           +  + +TD  L    +       L        S++      +TC      LK LDL  + 
Sbjct: 112 LKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATC----RNLKELDLRESD 167

Query: 142 FVGVVPDAIMKL----RNLRELILKG-NPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEI 196
              V    +        +L  L +     E+       +     NL+ L  +      ++
Sbjct: 168 VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKL 227

Query: 197 PESLYYLKSLKHLDLEKNNLTGNVHDF---------YQSLLVLNLGSNRFSGTLPCFAAS 247
              L     L+ L             +          + L  L+   +     LP   + 
Sbjct: 228 ATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSV 287

Query: 248 AMSLTVLKLDNNSVVG-GIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSF 306
              LT L L   +V    +   +     L  L +     +  +       + L  L +  
Sbjct: 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFP 347

Query: 307 NDLSGPLP---------SKIAQTTEKAGLVLLDLSHNRFSGE------------IPLKIT 345
           ++     P           ++    K  L  +     + +                 ++ 
Sbjct: 348 SEPFVMEPNVALTEQGLVSVSMGCPK--LESVLYFCRQMTNAALITIARNRPNMTRFRLC 405

Query: 346 ELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNN 405
            ++     +L+   L     A + +   L+ + LS  +             ++  L V  
Sbjct: 406 IIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAF 465

Query: 406 NNLSGE-IQPELDALDSLKILDISNNQISGE-IPLTLAGLKSLEIVDFSSNNLS 457
              S   +   L   DSL+ L+I +     + +    + L+++  +  SS ++S
Sbjct: 466 AGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 48.4 bits (115), Expect = 6e-06
 Identities = 73/522 (13%), Positives = 149/522 (28%), Gaps = 109/522 (20%)

Query: 88  NLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVP 147
            +    L G+ H     L    +            S+     + L+ + L       VV 
Sbjct: 67  KVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSY----TWLEEIRLKR----MVVT 118

Query: 148 DAIMKL-----RNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYY 202
           D  ++L     +N + L+L             +     NL++LD   +         L +
Sbjct: 119 DDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSH 178

Query: 203 L----KSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDN 258
                 SL  L++  + L   V                    L        +L  LKL+ 
Sbjct: 179 FPDTYTSLVSLNI--SCLASEVSF----------------SALERLVTRCPNLKSLKLNR 220

Query: 259 NSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLL----LLDLS-FNDLSGPL 313
              +  + T +     L  L                    L     L  LS F D     
Sbjct: 221 AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAY 280

Query: 314 PSKIAQTTEKAGLVLLDLSHNRFSGE-IPLKITELKSLQALFLSNNLL---IGEIPARIG 369
              +     +  L  L+LS+       +   + +   LQ L++ + +    +  + +   
Sbjct: 281 LPAVYSVCSR--LTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCK 338

Query: 370 NLTYLQVIDLSHNMLSGSIPLNIVG-------CFQLLALIVNNNNLS-------GEIQPE 415
           +L  L+V      ++  ++ L   G       C +L +++     ++          +P 
Sbjct: 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPN 398

Query: 416 LDALDSLKILDISNNQISGEIPLTLAGLKSL--EIVDFSSNNLSGSLNDAITKWTNLKYF 473
           +       I   + + ++ E      G  ++     D    +LSG L D           
Sbjct: 399 MTRFRLCIIEPKAPDYLTLEP--LDIGFGAIVEHCKDLRRLSLSGLLTDK---------- 446

Query: 474 SIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQL- 532
                 +             ++M+  +                SD         G+  + 
Sbjct: 447 --VFEYIGTYAKK-------MEMLSVA------------FAGDSD--------LGMHHVL 477

Query: 533 ---QGLEYLNLSFNFL--DGQVPGLYRLRSLRALDLSHNSLT 569
                L  L +          +    +L ++R+L +S  S++
Sbjct: 478 SGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.1 bits (107), Expect = 8e-06
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 523 GTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQEL 582
           G +     + + LE+L+     L   +  L +L  L+ L+LS N ++G +         L
Sbjct: 32  GKLEGLTDEFEELEFLSTINVGLT-SIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90

Query: 583 TLLNLSYNSFSGF 595
           T LNLS N     
Sbjct: 91  THLNLSGNKIKDL 103

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 24/140 (17%), Positives = 52/140 (37%), Gaps = 30/140 (21%)

Query: 342 LKITELKSLQALFLSNN-LLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLA 400
           L+      ++ L L N+    G++         L+ +   +  L+               
Sbjct: 11  LRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT--------------- 55

Query: 401 LIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSL 460
                 +++      L  L+ LK L++S+N++SG + +      +L  ++ S N +   L
Sbjct: 56  ------SIAN-----LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK-DL 103

Query: 461 ND--AITKWTNLKYFSIARN 478
           +    + K  NLK   +   
Sbjct: 104 STIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 2/78 (2%)

Query: 404 NNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDA 463
           N+ +  G+++   D  + L+ L   N  ++  I   L  L  L+ ++ S N +SG L   
Sbjct: 26  NSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELSDNRVSGGLEVL 83

Query: 464 ITKWTNLKYFSIARNKLS 481
             K  NL + +++ NK+ 
Sbjct: 84  AEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.4 bits (100), Expect = 9e-05
 Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 5/107 (4%)

Query: 181 NLEKLDFSFNSF-CGEIPESLYYLKSLKHLDLEKNNLT--GNVHDFYQSLLVLNLGSNRF 237
           ++++L    +    G++       + L+ L      LT   N+      L  L L  NR 
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKL-NKLKKLELSDNRV 76

Query: 238 SGTLPCFAASAMSLTVLKLDNNSVVG-GIPTCIASLQALTHLNLSHN 283
           SG L   A    +LT L L  N +        +  L+ L  L+L + 
Sbjct: 77  SGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.5 bits (108), Expect = 9e-06
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 523 GTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQEL 582
           G I     +   LE+L+L    L   V  L +L  L+ L+LS N + G +      L  L
Sbjct: 39  GKIEGLTAEFVNLEFLSLINVGLI-SVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97

Query: 583 TLLNLSYNSFS 593
           T LNLS N   
Sbjct: 98  THLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 26/136 (19%), Positives = 47/136 (34%), Gaps = 30/136 (22%)

Query: 346 ELKSLQALFLSNN-LLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVN 404
              +++ L L N     G+I         L+ + L +  L                    
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI------------------- 62

Query: 405 NNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLND-- 462
             ++S      L  L  LK L++S N+I G + +    L +L  ++ S N L   ++   
Sbjct: 63  --SVSN-----LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK-DISTLE 114

Query: 463 AITKWTNLKYFSIARN 478
            + K   LK   +   
Sbjct: 115 PLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 30/113 (26%), Positives = 40/113 (35%), Gaps = 9/113 (7%)

Query: 155 NLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKN 214
            +REL+L       G   G    F  NLE L             +L  L  LK L+L +N
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFV-NLEFLSLINVGL--ISVSNLPKLPKLKKLELSEN 81

Query: 215 NLT---GNVHDFYQSLLVLNLGSNRFS--GTLPCFAASAMSLTVLKLDNNSVV 262
            +      + +   +L  LNL  N+     TL         L  L L N  V 
Sbjct: 82  RIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPL-KKLECLKSLDLFNCEVT 133

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 53/213 (24%), Positives = 85/213 (39%), Gaps = 31/213 (14%)

Query: 230 LNLGSNRFSGTLPCFAASAMSLTVLKLDNNSV--VGGIPTCIASLQALTHLNLSHNHLNY 287
            NL     +           S+  +  +N+ +  V GI      L  + +L L  N L+ 
Sbjct: 24  ANLKKKSVT-DAVTQN-ELNSIDQIIANNSDIKSVQGIQ----YLPNVRYLALGGNKLH- 76

Query: 288 EISPRLVFFEKLL---LLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI 344
                +   ++L     L L+ N L   LP+ +        L  L L  N+    +P  +
Sbjct: 77  ----DISALKELTNLTYLILTGNQLQS-LPNGVFDKLTN--LKELVLVENQLQ-SLPDGV 128

Query: 345 -TELKSLQALFLSNNLLIGEIPARI-GNLTYLQVIDLSHNMLSGSIPLNIVGCF----QL 398
             +L +L  L L++N L   +P  +   LT L  +DLS+N L  S+P    G F    QL
Sbjct: 129 FDKLTNLTYLNLAHNQL-QSLPKGVFDKLTNLTELDLSYNQLQ-SLP---EGVFDKLTQL 183

Query: 399 LALIVNNNNLSGEIQPELDALDSLKILDISNNQ 431
             L +  N L        D L SL+ + + +N 
Sbjct: 184 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 55/229 (24%), Positives = 99/229 (43%), Gaps = 33/229 (14%)

Query: 364 IPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLK 423
            P      T     +L    ++ ++  N +     +    NN+++       +  L +++
Sbjct: 13  FPDDAFAET--IKANLKKKSVTDAVTQNELNSIDQIIA--NNSDIKSV--QGIQYLPNVR 66

Query: 424 ILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGN 483
            L +  N++  +I   L  L +L  +  + N L    N    K TNLK   +  N+L  +
Sbjct: 67  YLALGGNKLH-DISA-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-S 123

Query: 484 LPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLF-QLQGLEYLNLSF 542
           LP+ +F        D  TN           ++L+ N L  ++PKG+F +L  L  L+LS+
Sbjct: 124 LPDGVF--------DKLTN--------LTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSY 166

Query: 543 NFLDGQVPGLY-RLRSLRALDLSHNSLTGQIPG----NISSLQELTLLN 586
           N L     G++ +L  L+ L L  N L   +P      ++SLQ + L +
Sbjct: 167 NQLQSLPEGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHD 214

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 38/119 (31%), Positives = 54/119 (45%), Gaps = 14/119 (11%)

Query: 104 KLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKG 163
           +L+ L +L+L+ N      +  F  L+ LK L L  N+   +      KL NL  L L  
Sbjct: 83  ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH 142

Query: 164 N-----PELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLY-YLKSLKHLDLEKNNL 216
           N     P+  GVF         NL +LD S+N     +PE ++  L  LK L L +N L
Sbjct: 143 NQLQSLPK--GVFDKLT-----NLTELDLSYNQL-QSLPEGVFDKLTQLKDLRLYQNQL 193

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 38/135 (28%), Positives = 48/135 (35%), Gaps = 16/135 (11%)

Query: 109 EFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN---- 164
           + L L  N  T      F  L  LK L L  N+   +       L  L  L L  N    
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102

Query: 165 -PELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVH-- 221
            P    VF   V     +L++L    N    E+P  +  L  L HL L++N L    H  
Sbjct: 103 LPS--AVFDRLV-----HLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGA 154

Query: 222 -DFYQSLLVLNLGSN 235
            D   SL    L  N
Sbjct: 155 FDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 39/133 (29%), Positives = 51/133 (38%), Gaps = 8/133 (6%)

Query: 252 TVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVF--FEKLLLLDLSFNDL 309
            +L L +N +    P    SL  L  L L  N L     P  VF    +L +LDL  N L
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL--GALPVGVFDSLTQLTVLDLGTNQL 100

Query: 310 SGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIG 369
           +  LPS +        L  L +  N+ + E+P  I  L  L  L L  N L         
Sbjct: 101 TV-LPSAVFDRLVH--LKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFD 156

Query: 370 NLTYLQVIDLSHN 382
            L+ L    L  N
Sbjct: 157 RLSSLTHAYLFGN 169

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 43/306 (14%), Positives = 87/306 (28%), Gaps = 57/306 (18%)

Query: 181 NLEKLDFSFNSFCGEIPESLYYL-----KSLKHLDLEKNNLTGN-VHDFYQSLLV---LN 231
           +L +L+ +           +  +      +L  ++L    L    +       L    L 
Sbjct: 73  SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLG 132

Query: 232 LGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYE--- 288
           L  N           +   L  L L +                +T L LS+N L      
Sbjct: 133 LQLNSLG------PEACKDLRDLLLHDQCQ-------------ITTLRLSNNPLTAAGVA 173

Query: 289 -ISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEK-AGLVLLDLSHNRFSGEIPLKITE 346
            +   L     +  L L    L       +A   ++   L  L++++N       L +  
Sbjct: 174 VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR 233

Query: 347 L----KSLQALFLSNNLL-------IGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGC 395
                 SL+ L L  N L       + ++         + V       +S          
Sbjct: 234 AAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS------EYWS 287

Query: 396 FQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLA-GLK---SLEIVDF 451
             L  +  N N+     +  +     L + D+ +++ +   P   A  L+    +  +  
Sbjct: 288 VILSEVQRNLNSWD---RARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLE 344

Query: 452 SSNNLS 457
              +  
Sbjct: 345 QLGSSG 350

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 44/329 (13%), Positives = 97/329 (29%), Gaps = 53/329 (16%)

Query: 271 SLQALTHLNLSHNHLNYE-ISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQT--TEKAGLV 327
            L     L+    H  ++           L  L+L+   ++    + +A    + +  L 
Sbjct: 45  VLPPSELLDHLFFHYEFQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALD 104

Query: 328 LLDLSHNRFSGEIPLKITE-LKSLQALFLSNNLLIGEIPARI------GNLTYLQVIDLS 380
            ++L+  +        +       + L L  N  +G    +        +   +  + LS
Sbjct: 105 EVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDLLLHDQCQITTLRLS 163

Query: 381 HNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGE----I 436
           +N L+ +      G   +L   +  N              S+  L + +  +  E    +
Sbjct: 164 NNPLTAA------GV-AVLMEGLAGNT-------------SVTHLSLLHTGLGDEGLELL 203

Query: 437 PLTLAGLKSLEIVDFSSNNLSGS----LNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQ 492
              L   + L+ ++ + N    +    L  A  +  +L+   +  N+LS      L    
Sbjct: 204 AAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR--D 261

Query: 493 AIQMMDFSTNKFMGF-----IPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDG 547
                +      +       + +   + LS+   +          + LE L        G
Sbjct: 262 LGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRG 321

Query: 548 QVPGLYRL-------RSLRALDLSHNSLT 569
                +R          +RAL     S  
Sbjct: 322 ATLNPWRKAQLLRVEGEVRALLEQLGSSG 350

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 13/110 (11%)

Query: 351 QALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCF----QLLALIVNNN 406
             L+L  N     +P  + N  +L +IDLS+N +S ++       F    QLL LI++ N
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLS---NQSFSNMTQLLTLILSYN 88

Query: 407 NLSGEIQPEL-DALDSLKILDISNNQISGEIPL-TLAGLKSLEIVDFSSN 454
            L   I P   D L SL++L +  N IS  +P      L +L  +   +N
Sbjct: 89  RLR-CIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.0 bits (94), Expect = 9e-04
 Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 3/85 (3%)

Query: 508 IP-DAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLY-RLRSLRALDLSH 565
           IP D   + L  N     +PK L   + L  ++LS N +       +  +  L  L LS+
Sbjct: 29  IPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87

Query: 566 NSLTGQIPGNISSLQELTLLNLSYN 590
           N L    P     L+ L LL+L  N
Sbjct: 88  NRLRCIPPRTFDGLKSLRLLSLHGN 112

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	681
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.84
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.83
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.83
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.79
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.77
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.73
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.73
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.73
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.73
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.73
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.72
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.72
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.71
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.7
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.7
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.7
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.68
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.66
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.66
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.64
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.62
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.6
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.6
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.55
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.51
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.5
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.47
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.46
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.45
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.44
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.43
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.43
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.41
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.41
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.4
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.37
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.33
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.29
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.26
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.24
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.19
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.19
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.16
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.13
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.82
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.79
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.74
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.7
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.62
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.43
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.22
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.14
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.88
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.68
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.04
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.59
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.57
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.33

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=6.2e-83  Score=737.25  Aligned_cols=580  Identities=34%  Similarity=0.505  Sum_probs=480.8

Q ss_pred             CHHhHHHHHHHHhcCCCCCCCCCCC-CCCCCCCCCceeecCCCCcEEEEEcCCCCCccc---cc----------------
Q 005711           40 NLEDKASLLLFKSLVQDPTQKLSSW-VGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQ---VH----------------   99 (681)
Q Consensus        40 ~~~~~~~l~~~~~~~~~~~~~~~~w-~~~~cc~w~gv~c~~~~~~v~~L~L~~~~l~g~---~~----------------   99 (681)
                      ..+|++||++||+++.||. .+++| .+.+||.|+||+|+  .+||++|+|+++.+.|.   ++                
T Consensus        10 ~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~   86 (768)
T 3rgz_A           10 LYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSN   86 (768)
T ss_dssp             HHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTT
T ss_pred             CHHHHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcC
Confidence            4467779999999999888 89999 57899999999998  68999999999999886   44                


Q ss_pred             -------ccccCCCCCCEEECCCCcCCccccc--cccCCCCCCEEEccCCCCCCcCCccc-cCCCCCCEeeCCCCCC---
Q 005711          100 -------PRLCKLSFLEFLVLSSNAFTGRIST--CFGGLSGLKTLDLSYNKFVGVVPDAI-MKLRNLRELILKGNPE---  166 (681)
Q Consensus       100 -------~~l~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~~---  166 (681)
                             ..++++++|++|||++|.++|.+|.  .++++++|++|+|++|.+.+.+|..+ .++++|++|++++|.+   
T Consensus        87 ~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  166 (768)
T 3rgz_A           87 SHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA  166 (768)
T ss_dssp             SCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEE
T ss_pred             CCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCc
Confidence                   4678889999999999999988888  88999999999999988887777654 5566666666665532   


Q ss_pred             ---------------------------------------------CCccCCchhccccCCccEEEccCCcCccccCcccc
Q 005711          167 ---------------------------------------------LGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLY  201 (681)
Q Consensus       167 ---------------------------------------------~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~  201 (681)
                                                                   +.+.+|. ++++ ++|++|++++|.+++.+|..++
T Consensus       167 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l-~~L~~L~Ls~n~l~~~~~~~l~  244 (768)
T 3rgz_A          167 NVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDC-SALQHLDISGNKLSGDFSRAIS  244 (768)
T ss_dssp             THHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTC-CSCCEEECCSSCCCSCHHHHTT
T ss_pred             CChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccC-CCCCEEECcCCcCCCcccHHHh
Confidence                                                         1122222 3333 4444444444444444444444


Q ss_pred             CCCCCCEEEccCccCcccccC-cCCcccEEECCCCCCccccchhhccC-CCCCEEEccCCccccCCChhhcccCcccEEe
Q 005711          202 YLKSLKHLDLEKNNLTGNVHD-FYQSLLVLNLGSNRFSGTLPCFAASA-MSLTVLKLDNNSVVGGIPTCIASLQALTHLN  279 (681)
Q Consensus       202 ~l~~L~~L~L~~n~l~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  279 (681)
                      ++++|++|++++|.+++.+|. .+.+|++|++++|.+++.+|..+... ++|++|++++|.+++.+|..++.+++|++|+
T Consensus       245 ~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  324 (768)
T 3rgz_A          245 TCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA  324 (768)
T ss_dssp             TCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEE
T ss_pred             cCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEE
Confidence            445555555555544443333 23446666666666666777766654 7788888888888877888888888888888


Q ss_pred             cCCCccccccCcc-ccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccC--CCCCCEEecc
Q 005711          280 LSHNHLNYEISPR-LVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITE--LKSLQALFLS  356 (681)
Q Consensus       280 L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~--l~~L~~L~L~  356 (681)
                      +++|.+++.+|.. +..+++|++|++++|.+++.+|..+..+..  +|+.|++++|.+++.+|..+..  +++|++|+++
T Consensus       325 L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~--~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~  402 (768)
T 3rgz_A          325 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA--SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ  402 (768)
T ss_dssp             CCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTT--TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECC
T ss_pred             CCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhc--CCcEEEccCCCcCCCcChhhhhcccCCccEEECC
Confidence            8888887777765 777888888888888888788877766542  6888888888888877777766  7889999999


Q ss_pred             CCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceecc
Q 005711          357 NNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEI  436 (681)
Q Consensus       357 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  436 (681)
                      +|.+++.+|..++++++|++|++++|.+++.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+
T Consensus       403 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~  482 (768)
T 3rgz_A          403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI  482 (768)
T ss_dssp             SSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred             CCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcC
Confidence            99999889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccccCCCC------
Q 005711          437 PLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPD------  510 (681)
Q Consensus       437 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~------  510 (681)
                      |..+.++++|++|++++|++++.+|.+++.+++|++|++++|+++|.+|..+..+++|+.|++++|+++|.+|.      
T Consensus       483 p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~  562 (768)
T 3rgz_A          483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS  562 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTT
T ss_pred             CHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999998877663      


Q ss_pred             -----------------------------------------------------------------------CcccccCCc
Q 005711          511 -----------------------------------------------------------------------AVGMDLSDN  519 (681)
Q Consensus       511 -----------------------------------------------------------------------~~~L~Ls~N  519 (681)
                                                                                             .+.|||++|
T Consensus       563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N  642 (768)
T 3rgz_A          563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN  642 (768)
T ss_dssp             TCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS
T ss_pred             chhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCC
Confidence                                                                                   235899999


Q ss_pred             cccccCCcccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccCcceeeCCC
Q 005711          520 LLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPW  598 (681)
Q Consensus       520 ~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  598 (681)
                      +++|.+|.+++++++|+.|+|++|+++|.+|. ++++++|+.|||++|+++|.+|..++.+++|++||+++|+++|.||.
T Consensus       643 ~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~  722 (768)
T 3rgz_A          643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE  722 (768)
T ss_dssp             CCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred             cccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence            99999999999999999999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCccc-cccCCCCCCCCCCCCCCCCC
Q 005711          599 KQGYQKFPG-AFAGNPNLCLESSHGECNRT  627 (681)
Q Consensus       599 ~~~~~~~~~-~~~gn~~lc~~~~~~~c~~~  627 (681)
                      .+++.+++. +|.|||.+||.|.. .|...
T Consensus       723 ~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~  751 (768)
T 3rgz_A          723 MGQFETFPPAKFLNNPGLCGYPLP-RCDPS  751 (768)
T ss_dssp             SSSGGGSCGGGGCSCTEEESTTSC-CCCSC
T ss_pred             chhhccCCHHHhcCCchhcCCCCc-CCCCC
Confidence            999999988 89999999999987 88644

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.2e-64  Score=581.06  Aligned_cols=505  Identities=33%  Similarity=0.504  Sum_probs=442.6

Q ss_pred             cEEEEEcCCCCCcccccccc-cCCCCCCEEECCCCcCCcccccc-------------------------ccCCCCCCEEE
Q 005711           83 HVVSINLTDTSLSGQVHPRL-CKLSFLEFLVLSSNAFTGRISTC-------------------------FGGLSGLKTLD  136 (681)
Q Consensus        83 ~v~~L~L~~~~l~g~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~-------------------------~~~l~~L~~L~  136 (681)
                      +++.|+|++|.+.+.++..+ .++++|++||+++|.+++..|..                         +.++++|++|+
T Consensus       127 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~  206 (768)
T 3rgz_A          127 GLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLD  206 (768)
T ss_dssp             TCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEE
T ss_pred             CCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEE
Confidence            45666666666655555443 45555555555555554443322                         26788888999


Q ss_pred             ccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCCcCccccCccccCCCCCCEEEccCccC
Q 005711          137 LSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNL  216 (681)
Q Consensus       137 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  216 (681)
                      +++|.+++.+|. ++++++|++|++++| .+.+.+|..++++ ++|++|++++|.+.+.+|..  .+++|++|++++|.+
T Consensus       207 Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n-~l~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l  281 (768)
T 3rgz_A          207 VSSNNFSTGIPF-LGDCSALQHLDISGN-KLSGDFSRAISTC-TELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKF  281 (768)
T ss_dssp             CCSSCCCSCCCB-CTTCCSCCEEECCSS-CCCSCHHHHTTTC-SSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEE
T ss_pred             CcCCcCCCCCcc-cccCCCCCEEECcCC-cCCCcccHHHhcC-CCCCEEECCCCcccCccCcc--ccCCCCEEECcCCcc
Confidence            999999887777 999999999999999 5677889999999 89999999999999888865  899999999999999


Q ss_pred             cccccCcC----CcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChh-hcccCcccEEecCCCccccccCc
Q 005711          217 TGNVHDFY----QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTC-IASLQALTHLNLSHNHLNYEISP  291 (681)
Q Consensus       217 ~~~~~~~~----~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~~~  291 (681)
                      ++.+|..+    .+|++|++++|++++.+|..++.+++|++|++++|.+.+.+|.. +..+++|++|++++|.+++.+|.
T Consensus       282 ~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~  361 (768)
T 3rgz_A          282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE  361 (768)
T ss_dssp             EESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCT
T ss_pred             CCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccH
Confidence            98888764    66999999999999999999999999999999999999888876 89999999999999999999999


Q ss_pred             cccCCC-CCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCC
Q 005711          292 RLVFFE-KLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGN  370 (681)
Q Consensus       292 ~l~~l~-~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~  370 (681)
                      .+..++ +|++|++++|.++|.+|..+... ..++|+.|++++|.+++.+|..+..+++|++|++++|++++.+|..+++
T Consensus       362 ~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~  440 (768)
T 3rgz_A          362 SLTNLSASLLTLDLSSNNFSGPILPNLCQN-PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS  440 (768)
T ss_dssp             THHHHTTTCSEEECCSSEEEEECCTTTTCS-TTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG
T ss_pred             HHHhhhcCCcEEEccCCCcCCCcChhhhhc-ccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhc
Confidence            998887 99999999999999888877651 1237999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEE
Q 005711          371 LTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVD  450 (681)
Q Consensus       371 l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  450 (681)
                      +++|++|++++|.+++.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|.+++.+++|++|+
T Consensus       441 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  520 (768)
T 3rgz_A          441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK  520 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred             CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccc-----------------------------------------
Q 005711          451 FSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLF-----------------------------------------  489 (681)
Q Consensus       451 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~-----------------------------------------  489 (681)
                      +++|++++.+|..+..+++|++|++++|++.|.+|..+.                                         
T Consensus       521 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  600 (768)
T 3rgz_A          521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR  600 (768)
T ss_dssp             CCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCC
T ss_pred             CCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccccccc
Confidence            999999999999999999999999999999988876543                                         


Q ss_pred             -----------------------------cCCccceeecccCccccCCCCC-------cccccCCccccccCCccccccc
Q 005711          490 -----------------------------SFQAIQMMDFSTNKFMGFIPDA-------VGMDLSDNLLHGTIPKGLFQLQ  533 (681)
Q Consensus       490 -----------------------------~l~~L~~L~ls~n~~~~~~p~~-------~~L~Ls~N~l~g~ip~~l~~l~  533 (681)
                                                   .+++|+.||+++|+++|.+|..       ..|||++|+++|.+|..+++++
T Consensus       601 ~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~  680 (768)
T 3rgz_A          601 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR  680 (768)
T ss_dssp             GGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred             chhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCC
Confidence                                         2467889999999999998864       5799999999999999999999


Q ss_pred             ccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccCccee
Q 005711          534 GLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSG  594 (681)
Q Consensus       534 ~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~  594 (681)
                      +|++|||++|+++|.+|. +..+++|++||+++|+++|.||.. ..+..+....+.+|+--|
T Consensus       681 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lc  741 (768)
T 3rgz_A          681 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLC  741 (768)
T ss_dssp             TCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEE
T ss_pred             CCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhc
Confidence            999999999999999999 999999999999999999999975 445666777788887444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.9e-57  Score=519.68  Aligned_cols=534  Identities=22%  Similarity=0.219  Sum_probs=429.8

Q ss_pred             CCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEee
Q 005711           81 TGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELI  160 (681)
Q Consensus        81 ~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  160 (681)
                      +.++++|+++++.+.+..+..+.++++|++|++++|.+++..|..|+++++|++|+|++|.+++..+.+|+++++|++|+
T Consensus        24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  103 (680)
T 1ziw_A           24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH  103 (680)
T ss_dssp             CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence            35899999999999988778899999999999999999999999999999999999999999966666899999999999


Q ss_pred             CCCCCCCCccCCchhccccCCccEEEccCCcCccccCccccCCCCCCEEEccCccCcccccCcC-----CcccEEECCCC
Q 005711          161 LKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFY-----QSLLVLNLGSN  235 (681)
Q Consensus       161 L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~-----~~L~~L~L~~n  235 (681)
                      +++|+ +.+..|..++++ ++|++|++++|.+++..|..++++++|++|++++|.+++..+..+     .+|++|++++|
T Consensus       104 L~~n~-l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n  181 (680)
T 1ziw_A          104 LMSNS-IQKIKNNPFVKQ-KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN  181 (680)
T ss_dssp             CCSSC-CCCCCSCTTTTC-TTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred             CCCCc-cCccChhHcccc-CCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC
Confidence            99994 566667788998 899999999999998888999999999999999999998776532     56999999999


Q ss_pred             CCccccchhhccC---------------------------CCCCEEEccCCccccCCChhhcccCc--ccEEecCCCccc
Q 005711          236 RFSGTLPCFAASA---------------------------MSLTVLKLDNNSVVGGIPTCIASLQA--LTHLNLSHNHLN  286 (681)
Q Consensus       236 ~l~~~~~~~~~~~---------------------------~~L~~L~L~~n~l~~~~p~~l~~l~~--L~~L~L~~n~l~  286 (681)
                      .+++..|..+..+                           ++|+.|++++|.+.+..|.++..++.  |++|++++|.++
T Consensus       182 ~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~  261 (680)
T 1ziw_A          182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN  261 (680)
T ss_dssp             CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC
T ss_pred             cccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC
Confidence            9998877766544                           56788888888888888888887765  999999999998


Q ss_pred             cccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcC-----CCcc----cccCCCCCCEEeccC
Q 005711          287 YEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSG-----EIPL----KITELKSLQALFLSN  357 (681)
Q Consensus       287 ~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~-----~~p~----~l~~l~~L~~L~L~~  357 (681)
                      +..+..+..+++|++|++++|.+++..|..+..+.   +|+.|++++|...+     .+|.    .+..+++|++|++++
T Consensus       262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~---~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~  338 (680)
T 1ziw_A          262 VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF---NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED  338 (680)
T ss_dssp             EECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCT---TCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCS
T ss_pred             ccCcccccCcccccEeeCCCCccCccChhhhcCCC---CccEEeccchhhhcccccccccccChhhcccCCCCCEEECCC
Confidence            88888889999999999999999888887777766   78888888776553     2332    567788889999999


Q ss_pred             CccccccccccCCCCCCCEEEccCCcCccc-c-Cccccc--CCCcceeecccccccccCccccCCCCCccEEEcccCcce
Q 005711          358 NLLIGEIPARIGNLTYLQVIDLSHNMLSGS-I-PLNIVG--CFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQIS  433 (681)
Q Consensus       358 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~-p~~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  433 (681)
                      |.+.+..+..+.++++|++|++++|.+.+. + +..+..  .++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus       339 n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  418 (680)
T 1ziw_A          339 NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG  418 (680)
T ss_dssp             CCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCE
T ss_pred             CccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCc
Confidence            988888888888888888888888875432 2 222322  257888888888888888888888888888888888888


Q ss_pred             eccc-cccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCc--ccCCcccccCCccceeecccCccccCCCC
Q 005711          434 GEIP-LTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLS--GNLPNWLFSFQAIQMMDFSTNKFMGFIPD  510 (681)
Q Consensus       434 ~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~ls~n~~~~~~p~  510 (681)
                      +.+| ..+.++++|++|++++|++.+..+..+..+++|++|++++|.+.  +.+|..+..+++|+.|++++|++++..|.
T Consensus       419 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~  498 (680)
T 1ziw_A          419 QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD  498 (680)
T ss_dssp             EECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             cccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChh
Confidence            7665 67788888888888888888777777888888888888888876  46777788888888888888887765443


Q ss_pred             -------CcccccCCccccccCC--------cccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCc
Q 005711          511 -------AVGMDLSDNLLHGTIP--------KGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPG  574 (681)
Q Consensus       511 -------~~~L~Ls~N~l~g~ip--------~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~  574 (681)
                             ...|++++|++++..+        ..+.++++|++|+|++|+++...+. +.++++|+.|++++|++++..+.
T Consensus       499 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~  578 (680)
T 1ziw_A          499 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPAS  578 (680)
T ss_dssp             TTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             hhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHh
Confidence                   3568888888875321        2367788888888888888844444 77788888888888888876666


Q ss_pred             cccCCCCCCeEecccCcceeeCCCCC--CCCCccc-cccCCCCCCCCC
Q 005711          575 NISSLQELTLLNLSYNSFSGFVPWKQ--GYQKFPG-AFAGNPNLCLES  619 (681)
Q Consensus       575 ~l~~l~~L~~L~ls~N~l~~~~p~~~--~~~~~~~-~~~gn~~lc~~~  619 (681)
                      .|..+++|+.|++++|++++..|...  .+..+.. .+.|||..|...
T Consensus       579 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          579 VFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             TTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             HhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence            67888888888888888887655321  2334444 678888888543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=8.4e-56  Score=506.12  Aligned_cols=511  Identities=21%  Similarity=0.200  Sum_probs=447.9

Q ss_pred             CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeC
Q 005711           82 GHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELIL  161 (681)
Q Consensus        82 ~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  161 (681)
                      .+++.|+++++.+.+..+..+.++++|++|+|++|.+++..+..|+++++|++|++++|++++..|..|+++++|++|++
T Consensus        49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  128 (680)
T 1ziw_A           49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL  128 (680)
T ss_dssp             TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred             CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEEC
Confidence            47889999999999888888999999999999999999766668999999999999999999877788999999999999


Q ss_pred             CCCCCCCccCCchhccccCCccEEEccCCcCccccCcccc--CCCCCCEEEccCccCcccccCcC---------------
Q 005711          162 KGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLY--YLKSLKHLDLEKNNLTGNVHDFY---------------  224 (681)
Q Consensus       162 ~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~L~~n~l~~~~~~~~---------------  224 (681)
                      ++| .+.+..|..++++ ++|++|++++|.+++..+..+.  .+++|++|++++|.+++..+..+               
T Consensus       129 s~n-~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~  206 (680)
T 1ziw_A          129 SHN-GLSSTKLGTQVQL-ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ  206 (680)
T ss_dssp             CSS-CCSCCCCCSSSCC-TTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCC
T ss_pred             CCC-cccccCchhhccc-ccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccc
Confidence            999 5567777888888 8999999999999877666554  56899999999999987766533               


Q ss_pred             ---------------CcccEEECCCCCCccccchhhccCCC--CCEEEccCCccccCCChhhcccCcccEEecCCCcccc
Q 005711          225 ---------------QSLLVLNLGSNRFSGTLPCFAASAMS--LTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNY  287 (681)
Q Consensus       225 ---------------~~L~~L~L~~n~l~~~~~~~~~~~~~--L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  287 (681)
                                     .+|+.|++++|.+++..|..+..++.  |++|++++|.+++..|..++.+++|++|++++|.+++
T Consensus       207 l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  286 (680)
T 1ziw_A          207 LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH  286 (680)
T ss_dssp             CHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSE
T ss_pred             cChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCc
Confidence                           35788999999999988988888755  9999999999999888999999999999999999999


Q ss_pred             ccCccccCCCCCcEEeccCCCccCC-----CCh----hhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCC
Q 005711          288 EISPRLVFFEKLLLLDLSFNDLSGP-----LPS----KIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNN  358 (681)
Q Consensus       288 ~~~~~l~~l~~L~~L~L~~n~l~~~-----~p~----~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n  358 (681)
                      ..|..+..+++|+.|++++|...+.     +|.    .+..+   ++|+.|++++|.+++..+..+..+++|++|++++|
T Consensus       287 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  363 (680)
T 1ziw_A          287 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL---KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS  363 (680)
T ss_dssp             ECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC---TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTC
T ss_pred             cChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC---CCCCEEECCCCccCCCChhHhccccCCcEEECCCC
Confidence            9999999999999999998766542     332    34444   48999999999999988889999999999999999


Q ss_pred             cccccc--ccccCC--CCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCc-cccCCCCCccEEEcccCcce
Q 005711          359 LLIGEI--PARIGN--LTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQ-PELDALDSLKILDISNNQIS  433 (681)
Q Consensus       359 ~l~~~~--~~~l~~--l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~  433 (681)
                      .+....  ...+..  .++|+.|++++|.+++..|..+..+++|+.|++++|.+.+.++ ..+..+++|+.|++++|++.
T Consensus       364 ~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~  443 (680)
T 1ziw_A          364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL  443 (680)
T ss_dssp             BSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEE
T ss_pred             chhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcc
Confidence            864332  222332  3689999999999999999999999999999999999998776 67899999999999999999


Q ss_pred             eccccccCCCCCCcEEECCCCcCC--CcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccccC----
Q 005711          434 GEIPLTLAGLKSLEIVDFSSNNLS--GSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGF----  507 (681)
Q Consensus       434 ~~~p~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~----  507 (681)
                      +..+..+..+++|++|++++|.+.  +.+|..+..+++|++|++++|++++..+..+..+++|+.|++++|++++.    
T Consensus       444 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  523 (680)
T 1ziw_A          444 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHA  523 (680)
T ss_dssp             ECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTT
T ss_pred             eeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhh
Confidence            988999999999999999999987  57888999999999999999999987778899999999999999998753    


Q ss_pred             -----------CCCCcccccCCccccccCCc-ccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCc
Q 005711          508 -----------IPDAVGMDLSDNLLHGTIPK-GLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPG  574 (681)
Q Consensus       508 -----------~p~~~~L~Ls~N~l~g~ip~-~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~  574 (681)
                                 .+....|+|++|+++ .+|. .+.++++|++|+|++|++++..+. +.++++|+.|++++|++++..|.
T Consensus       524 ~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~  602 (680)
T 1ziw_A          524 NPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK  602 (680)
T ss_dssp             STTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHH
T ss_pred             ccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChh
Confidence                       245578999999999 5654 689999999999999999976666 78899999999999999998888


Q ss_pred             ccc-CCCCCCeEecccCcceeeCCC
Q 005711          575 NIS-SLQELTLLNLSYNSFSGFVPW  598 (681)
Q Consensus       575 ~l~-~l~~L~~L~ls~N~l~~~~p~  598 (681)
                      .+. .+++|+.+++++|++.|.++.
T Consensus       603 ~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          603 VFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             HHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             HhcccccccCEEEccCCCcccCCcc
Confidence            787 789999999999999999874

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=5.5e-56  Score=500.86  Aligned_cols=484  Identities=20%  Similarity=0.160  Sum_probs=324.5

Q ss_pred             CCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEE
Q 005711          107 FLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLD  186 (681)
Q Consensus       107 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~  186 (681)
                      .+++|++++|.+++..|..|+++++|++|+|++|++++..|.+|.++++|++|++++| .+.+..|..++++ ++|++|+
T Consensus        34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l-~~L~~L~  111 (606)
T 3t6q_A           34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-PLIFMAETALSGP-KALKHLF  111 (606)
T ss_dssp             TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCSEECTTTTSSC-TTCCEEE
T ss_pred             cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC-cccccChhhhccc-ccccEee
Confidence            3455555555555444445555555555555555555444555555555555555555 2334444444444 4555555


Q ss_pred             ccCCcCccccCccccCCCCCCEEEccCccCcccc-cCc--CCcccEEECCCCCCccccchhhccCCCCC--EEEccCCcc
Q 005711          187 FSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNV-HDF--YQSLLVLNLGSNRFSGTLPCFAASAMSLT--VLKLDNNSV  261 (681)
Q Consensus       187 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-~~~--~~~L~~L~L~~n~l~~~~~~~~~~~~~L~--~L~L~~n~l  261 (681)
                      +++|.+++..|..++++++|++|++++|.+++.. +..  +.+|++|++++|.+++..+..++.+++|+  .|++++|.+
T Consensus       112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l  191 (606)
T 3t6q_A          112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI  191 (606)
T ss_dssp             CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred             ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence            5555555433444555555555555555554422 211  23355555555555544445555555555  555555555


Q ss_pred             ccCCChhhcccCcccEEecCCCccc--------------------------cccCccccCCC--CCcEEeccCCCccCCC
Q 005711          262 VGGIPTCIASLQALTHLNLSHNHLN--------------------------YEISPRLVFFE--KLLLLDLSFNDLSGPL  313 (681)
Q Consensus       262 ~~~~p~~l~~l~~L~~L~L~~n~l~--------------------------~~~~~~l~~l~--~L~~L~L~~n~l~~~~  313 (681)
                      .+..|..+.. .+|++|++++|...                          ...+..+..+.  +|+.|++++|.+++..
T Consensus       192 ~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~  270 (606)
T 3t6q_A          192 AGIEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS  270 (606)
T ss_dssp             CEECTTTTTT-CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCC
T ss_pred             CccChhHhhh-ccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccC
Confidence            5444433322 34555555444310                          00111122222  6778888888887666


Q ss_pred             ChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcc-c
Q 005711          314 PSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLN-I  392 (681)
Q Consensus       314 p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~-~  392 (681)
                      +..+..+.   +|++|++++|.++ .+|..+..+++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|.. +
T Consensus       271 ~~~~~~l~---~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  346 (606)
T 3t6q_A          271 SNTFHCFS---GLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL  346 (606)
T ss_dssp             TTTTTTCT---TCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTT
T ss_pred             HHHhcccc---CCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhh
Confidence            65566655   7888888888887 67777777888888888888887777777788888888888888877666554 6


Q ss_pred             ccCCCcceeecccccccccC--ccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchh-hhhcCCC
Q 005711          393 VGCFQLLALIVNNNNLSGEI--QPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLND-AITKWTN  469 (681)
Q Consensus       393 ~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~  469 (681)
                      ..+++|++|++++|.+.+..  +..+..+++|+.|++++|.+.+..|..+..+++|++|++++|++++..+. .+..+++
T Consensus       347 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  426 (606)
T 3t6q_A          347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL  426 (606)
T ss_dssp             TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTT
T ss_pred             hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCccc
Confidence            77788888888888887665  66677788888888888888877777788888888888888888766543 3777888


Q ss_pred             CCEEEccCCcCcccCCcccccCCccceeecccCccccC----------CCCCcccccCCccccccCCcccccccccceee
Q 005711          470 LKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGF----------IPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLN  539 (681)
Q Consensus       470 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~----------~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~  539 (681)
                      |++|++++|.+.+..|..+..+++|+.|++++|++.+.          .+..+.|++++|++++..|..+.++++|++|+
T Consensus       427 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  506 (606)
T 3t6q_A          427 LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVD  506 (606)
T ss_dssp             CCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEE
Confidence            88888888888777777778888888888888877652          23456788888888888888899999999999


Q ss_pred             cCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccCcceeeCCC
Q 005711          540 LSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPW  598 (681)
Q Consensus       540 Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  598 (681)
                      |++|++++.+|. +.+++.| .|++++|++++.+|..+..+++|+.+++++|++.|.++.
T Consensus       507 Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  565 (606)
T 3t6q_A          507 LSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN  565 (606)
T ss_dssp             CCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred             CCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence            999999988887 8889999 999999999988888888899999999999999988873

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2.6e-55  Score=511.97  Aligned_cols=533  Identities=21%  Similarity=0.169  Sum_probs=445.5

Q ss_pred             CCCCceeecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccc-cccccCCCCCCEEEccCCCCCCcCCc
Q 005711           70 TNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRI-STCFGGLSGLKTLDLSYNKFVGVVPD  148 (681)
Q Consensus        70 c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~p~  148 (681)
                      +.|..|.+  .+.++++|+|++|.+.+..+..+.++++|++|+|++|.+.+.+ |..|+++++|++|+|++|.+.+..|.
T Consensus        14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~   91 (844)
T 3j0a_A           14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD   91 (844)
T ss_dssp             CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred             CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence            45777776  5678999999999999988999999999999999999776665 88999999999999999999999999


Q ss_pred             cccCCCCCCEeeCCCCCCCCccCCch--hccccCCccEEEccCCcCccccC-ccccCCCCCCEEEccCccCcccccCcC-
Q 005711          149 AIMKLRNLRELILKGNPELGGVFPGW--VGNFSMNLEKLDFSFNSFCGEIP-ESLYYLKSLKHLDLEKNNLTGNVHDFY-  224 (681)
Q Consensus       149 ~~~~l~~L~~L~L~~n~~~~~~~p~~--l~~l~~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~~~-  224 (681)
                      +|+++++|++|++++| .+.+.+|..  +.++ ++|++|++++|.+++..+ ..++++++|++|++++|.+++..+..+ 
T Consensus        92 ~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L-~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~  169 (844)
T 3j0a_A           92 AFQGLFHLFELRLYFC-GLSDAVLKDGYFRNL-KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE  169 (844)
T ss_dssp             SSCSCSSCCCEECTTC-CCSSCCSTTCCCSSC-SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGH
T ss_pred             HccCCcccCEeeCcCC-CCCcccccCcccccc-CCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcc
Confidence            9999999999999999 455555544  8888 899999999999987654 579999999999999999998877765 


Q ss_pred             ----CcccEEECCCCCCccccchhhccCCC------CCEEEccCCccccCCChhhccc---CcccEEecCCCc-------
Q 005711          225 ----QSLLVLNLGSNRFSGTLPCFAASAMS------LTVLKLDNNSVVGGIPTCIASL---QALTHLNLSHNH-------  284 (681)
Q Consensus       225 ----~~L~~L~L~~n~l~~~~~~~~~~~~~------L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~L~~n~-------  284 (681)
                          .+|+.|++++|.+.+..|..+..+++      |++|++++|.+++..+..+...   .+++.+.+..+.       
T Consensus       170 ~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~  249 (844)
T 3j0a_A          170 PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF  249 (844)
T ss_dssp             HHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSC
T ss_pred             cccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccc
Confidence                56899999999999988887776665      9999999999998888777543   578888887433       


Q ss_pred             --cccccCccccCC--CCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCcc
Q 005711          285 --LNYEISPRLVFF--EKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLL  360 (681)
Q Consensus       285 --l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l  360 (681)
                        +.+.....+..+  ++|+.|++++|.+.+..|..+..+.   +|+.|++++|++++..|..+..+++|++|++++|.+
T Consensus       250 ~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~---~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l  326 (844)
T 3j0a_A          250 HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLK---DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL  326 (844)
T ss_dssp             SSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCC---CCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCC
T ss_pred             cccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCC---CCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCC
Confidence              222233334443  7899999999999988787777666   899999999999988888999999999999999999


Q ss_pred             ccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceecccccc
Q 005711          361 IGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTL  440 (681)
Q Consensus       361 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~  440 (681)
                      ++..|..+.++++|++|++++|.+.+..+..+..+++|+.|++++|.+++.     ..+++|+.|++++|+++ .+|.. 
T Consensus       327 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~-  399 (844)
T 3j0a_A          327 GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI-  399 (844)
T ss_dssp             SCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC-
T ss_pred             CccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccccc-
Confidence            988899999999999999999999988888899999999999999998853     33789999999999998 45543 


Q ss_pred             CCCCCCcEEECCCCcCCCc-chhhhhcCCCCCEEEccCCcCcccCCc-ccccCCccceeecccCccccC-----------
Q 005711          441 AGLKSLEIVDFSSNNLSGS-LNDAITKWTNLKYFSIARNKLSGNLPN-WLFSFQAIQMMDFSTNKFMGF-----------  507 (681)
Q Consensus       441 ~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~ls~n~~~~~-----------  507 (681)
                        ..+++.+++++|++++. .+..+..+++|++|++++|++++..+. .+..+++|+.|++++|.+.+.           
T Consensus       400 --~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~  477 (844)
T 3j0a_A          400 --NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFE  477 (844)
T ss_dssp             --CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSS
T ss_pred             --ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhc
Confidence              56899999999999864 234466899999999999999865443 455689999999999998632           


Q ss_pred             -CCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCCcCCCCCCCEEECCCCcCcccCCccccCCCCCCeEe
Q 005711          508 -IPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLN  586 (681)
Q Consensus       508 -~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  586 (681)
                       ++....|||++|++++..|..+..+++|+.|+|++|++++.+|.... ++|+.||+++|++++.+|..+   .+|+.++
T Consensus       478 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~  553 (844)
T 3j0a_A          478 GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLLAPNPDVF---VSLSVLD  553 (844)
T ss_dssp             CBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECCCCCCSCCC---SSCCEEE
T ss_pred             CcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-ccccEEECCCCcCCCCChhHh---CCcCEEE
Confidence             24456899999999988888899999999999999999977666333 899999999999999999876   4789999


Q ss_pred             cccCcceeeCCCCCCCCCccc-cccCCCCCCCCCCCCCCCC
Q 005711          587 LSYNSFSGFVPWKQGYQKFPG-AFAGNPNLCLESSHGECNR  626 (681)
Q Consensus       587 ls~N~l~~~~p~~~~~~~~~~-~~~gn~~lc~~~~~~~c~~  626 (681)
                      +++|++.|.|+..+    |.. ...++..+||.+....|..
T Consensus       554 l~~Np~~C~c~~~~----f~~~~~~~~~~~~~~~~~~~C~~  590 (844)
T 3j0a_A          554 ITHNKFICECELST----FINWLNHTNVTIAGPPADIYCVY  590 (844)
T ss_dssp             EEEECCCCSSSCCS----HHHHHHHTTTTTCCCGGGCCCSS
T ss_pred             ecCCCcccccccHH----HHHHHHhcCcccccccccCccCC
Confidence            99999999987433    222 2234556666666667753

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=7.3e-57  Score=507.97  Aligned_cols=506  Identities=18%  Similarity=0.229  Sum_probs=248.0

Q ss_pred             HHhHHHHHHHHhcCCCCCC--------CCCCC-CCCCCCCC---CceeecCCCCcEEEEEcCCCCCcccccccccCCCCC
Q 005711           41 LEDKASLLLFKSLVQDPTQ--------KLSSW-VGSNCTNW---TGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFL  108 (681)
Q Consensus        41 ~~~~~~l~~~~~~~~~~~~--------~~~~w-~~~~cc~w---~gv~c~~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L  108 (681)
                      ..|+.||.+++.++.++.-        ...+| .+.+||.|   .||+|+. .+||++|+|+++++.|.+|++++++++|
T Consensus        29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~~l~g~lp~~l~~L~~L  107 (636)
T 4eco_A           29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNS-NGRVTGLSLEGFGASGRVPDAIGQLTEL  107 (636)
T ss_dssp             HHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECT-TCCEEEEECTTSCCEEEECGGGGGCTTC
T ss_pred             HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcC-CCCEEEEEecCcccCCcCChHHhcCccc
Confidence            4677899999999875421        24589 56899999   9999984 4899999999999999999999999999


Q ss_pred             CEEECCCCcC------Cc------cccccccCCCCCCEEEccCCCCCCcCCccccC-CCCCCEeeCCCCCCCCccCCchh
Q 005711          109 EFLVLSSNAF------TG------RISTCFGGLSGLKTLDLSYNKFVGVVPDAIMK-LRNLRELILKGNPELGGVFPGWV  175 (681)
Q Consensus       109 ~~L~Ls~n~l------~~------~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~L~~n~~~~~~~p~~l  175 (681)
                      ++|+|++|.+      .+      .+|...  +..|+ +++++|.+.+.+|..+.. +..+.++++...+...       
T Consensus       108 ~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~-------  177 (636)
T 4eco_A          108 EVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK-------  177 (636)
T ss_dssp             CEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC-------
T ss_pred             eEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcccccccc-------
Confidence            9999999976      22      334333  55677 888888888877776653 2223333333221100       


Q ss_pred             ccccCCccEEEcc--CCcCccccCccccCCCCCCEEEccCccCccc-ccCcCCcccEEECCCCCCccccchhhc--cCCC
Q 005711          176 GNFSMNLEKLDFS--FNSFCGEIPESLYYLKSLKHLDLEKNNLTGN-VHDFYQSLLVLNLGSNRFSGTLPCFAA--SAMS  250 (681)
Q Consensus       176 ~~l~~~L~~L~L~--~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~--~~~~  250 (681)
                      ... ..++.+.+.  .|.++| +|.+++++++|++|++++|.+++. ++..+..     -..+...+.+|..++  ++++
T Consensus       178 ~~~-~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~-----~~~~~~~~~ip~~l~~~~l~~  250 (636)
T 4eco_A          178 SSR-ITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN-----ENSEYAQQYKTEDLKWDNLKD  250 (636)
T ss_dssp             CCC-CCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSC-----TTSHHHHHHTTSCCCGGGCTT
T ss_pred             ccc-cchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccc-----cccchhcccCchhhhhcccCC
Confidence            000 122222222  455665 666666666666666666666663 0000000     000000111333333  3344


Q ss_pred             CCEEEccCCccccCCChhhcccCcccEEecCCCc-ccc-ccCccccCC------CCCcEEeccCCCccCCCCh--hhhhc
Q 005711          251 LTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNH-LNY-EISPRLVFF------EKLLLLDLSFNDLSGPLPS--KIAQT  320 (681)
Q Consensus       251 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~~~~l~~l------~~L~~L~L~~n~l~~~~p~--~~~~~  320 (681)
                      |++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..++.+      ++|++|++++|.++ .+|.  .++.+
T Consensus       251 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l  329 (636)
T 4eco_A          251 LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKM  329 (636)
T ss_dssp             CCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTC
T ss_pred             CCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccC
Confidence            4444444444444444444444444444444443 333 333333332      34444444444443 3333  33333


Q ss_pred             ccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCC-CCEEEccCCcCccccCcccccCC--C
Q 005711          321 TEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTY-LQVIDLSHNMLSGSIPLNIVGCF--Q  397 (681)
Q Consensus       321 ~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~Ls~n~l~~~~p~~~~~~~--~  397 (681)
                      .   +|+.|++++|+++|.+| .+..+++|++|++++|+++ .+|..+.++++ |++|++++|.++ .+|..+....  +
T Consensus       330 ~---~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~  403 (636)
T 4eco_A          330 K---KLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSV  403 (636)
T ss_dssp             T---TCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSC
T ss_pred             C---CCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCc
Confidence            3   34444444444443344 3333444444444444443 33333444444 444444444443 3333333222  3


Q ss_pred             cceeecccccccccCccccC-------CCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhh-hcC--
Q 005711          398 LLALIVNNNNLSGEIQPELD-------ALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAI-TKW--  467 (681)
Q Consensus       398 L~~L~l~~n~l~~~~~~~~~-------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l--  467 (681)
                      |+.|++++|.+.+.+|..+.       .+++|+.|++++|.+++..+..+..+++|++|++++|+++ .+|... ...  
T Consensus       404 L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~  482 (636)
T 4eco_A          404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENE  482 (636)
T ss_dssp             EEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTE
T ss_pred             cCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccc
Confidence            44444444444444443333       3344444444444444222222233444444444444444 222211 111  


Q ss_pred             -----CCCCEEEccCCcCcccCCcccc--cCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeec
Q 005711          468 -----TNLKYFSIARNKLSGNLPNWLF--SFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNL  540 (681)
Q Consensus       468 -----~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~L  540 (681)
                           ++|++|++++|+++ .+|..+.  .+++|+.|++++|+++                  .+|..++++++|++|+|
T Consensus       483 ~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~------------------~ip~~~~~l~~L~~L~L  543 (636)
T 4eco_A          483 NFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFS------------------KFPTQPLNSSTLKGFGI  543 (636)
T ss_dssp             ECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCS------------------SCCCGGGGCSSCCEEEC
T ss_pred             cccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCC------------------CcChhhhcCCCCCEEEC
Confidence                 14444444444444 3444443  4444444443333332                  13444444444555544


Q ss_pred             ------CCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccCccee
Q 005711          541 ------SFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSG  594 (681)
Q Consensus       541 ------s~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~  594 (681)
                            ++|++.+.+|. +..+++|+.|++++|++ +.+|..+.  ++|+.|++++|++.+
T Consensus       544 s~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          544 RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS  601 (636)
T ss_dssp             CSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred             CCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence                  33444545554 55555555555555555 34554433  455555555555543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=5.9e-55  Score=492.41  Aligned_cols=502  Identities=22%  Similarity=0.228  Sum_probs=402.2

Q ss_pred             CCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEee
Q 005711           81 TGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELI  160 (681)
Q Consensus        81 ~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  160 (681)
                      ..++++|+++++.+.+..+..+.++++|++|++++|.+++..|..|+++++|++|+|++|.+++..|.+|+++++|++|+
T Consensus        31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  110 (606)
T 3vq2_A           31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV  110 (606)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred             CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence            45799999999999988888999999999999999999998899999999999999999999988899999999999999


Q ss_pred             CCCCCCCCccCCchhccccCCccEEEccCCcCcc-ccCccccCCCCCCEEEccCccCcccccCcCCc-------ccEEEC
Q 005711          161 LKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCG-EIPESLYYLKSLKHLDLEKNNLTGNVHDFYQS-------LLVLNL  232 (681)
Q Consensus       161 L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-------L~~L~L  232 (681)
                      +++| .+.+..+..++++ ++|++|++++|.+++ .+|..++++++|++|++++|.+++..+..+..       +++|++
T Consensus       111 L~~n-~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l  188 (606)
T 3vq2_A          111 AVET-KLASLESFPIGQL-ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM  188 (606)
T ss_dssp             CTTS-CCCCSSSSCCTTC-TTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEEC
T ss_pred             ccCC-ccccccccccCCC-CCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeec
Confidence            9999 4555566778888 899999999999986 67999999999999999999999988877654       348999


Q ss_pred             CCCCCccccchhhccCCCCCEEEccCCccc-cCCChhhcccCcccEEecCCCccccc---------cCccccCCCCCcEE
Q 005711          233 GSNRFSGTLPCFAASAMSLTVLKLDNNSVV-GGIPTCIASLQALTHLNLSHNHLNYE---------ISPRLVFFEKLLLL  302 (681)
Q Consensus       233 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~---------~~~~l~~l~~L~~L  302 (681)
                      ++|.+++..+..+.. .+|++|++++|.+. +..|..+.++++|+.+++..+.+.+.         .+..+..+ .++.+
T Consensus       189 ~~n~l~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l-~l~~l  266 (606)
T 3vq2_A          189 SLNPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV-TIDEF  266 (606)
T ss_dssp             TTCCCCEECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGS-EEEEE
T ss_pred             cCCCcceeCcccccC-ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhc-cHhhe
Confidence            999998665555544 48999999999887 46677888899998888754433221         11112222 35556


Q ss_pred             ec-cCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccC
Q 005711          303 DL-SFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSH  381 (681)
Q Consensus       303 ~L-~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~  381 (681)
                      ++ ..+.+.+.+|. +..+.   +|+.|++++|.+. .+| .+..+++|++|++++|.+ +.+| .+ .+++|++|++++
T Consensus       267 ~l~~~~~~~~~~~~-~~~l~---~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~  337 (606)
T 3vq2_A          267 RLTYTNDFSDDIVK-FHCLA---NVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTM  337 (606)
T ss_dssp             EECCCTTCCGGGGS-CGGGT---TCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEES
T ss_pred             eccccccccccccc-cccCC---CCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccC
Confidence            66 55666666665 44444   7888888888876 455 677777888888888887 5666 34 778888888888


Q ss_pred             CcCccccCcccccCCCcceeeccccccccc--CccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCc
Q 005711          382 NMLSGSIPLNIVGCFQLLALIVNNNNLSGE--IQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGS  459 (681)
Q Consensus       382 n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~  459 (681)
                      |...+.+  .+..+++|+.|++++|.+++.  ++..+..+++|+.|++++|.+.+ +|..+..+++|++|++++|++.+.
T Consensus       338 n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~  414 (606)
T 3vq2_A          338 NKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRV  414 (606)
T ss_dssp             CSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEEST
T ss_pred             CcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCc
Confidence            8655444  455777888888888877765  36667777888888888888774 557777788888888888888776


Q ss_pred             ch-hhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccccC-C-------CCCcccccCCccccccCCcccc
Q 005711          460 LN-DAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGF-I-------PDAVGMDLSDNLLHGTIPKGLF  530 (681)
Q Consensus       460 ~~-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~-~-------p~~~~L~Ls~N~l~g~ip~~l~  530 (681)
                      .+ ..+..+++|++|++++|.+.+..|..+..+++|+.|++++|++.+. +       +..+.|++++|++++..|..+.
T Consensus       415 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  494 (606)
T 3vq2_A          415 TEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD  494 (606)
T ss_dssp             TTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred             cChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhc
Confidence            66 5677788888888888888877777777888888888888877652 2       3345688888888888889999


Q ss_pred             cccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCC-CCCeEecccCcceeeCCCC
Q 005711          531 QLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQ-ELTLLNLSYNSFSGFVPWK  599 (681)
Q Consensus       531 ~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~~~~p~~  599 (681)
                      ++++|++|+|++|++++.+|. +.++++|+.||+++|+++ .+|..+..++ +|++|++++|++.|.++..
T Consensus       495 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~  564 (606)
T 3vq2_A          495 TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQ  564 (606)
T ss_dssp             TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred             ccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccH
Confidence            999999999999999998888 889999999999999999 6777788887 5999999999999988753

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=8.3e-54  Score=483.05  Aligned_cols=485  Identities=22%  Similarity=0.230  Sum_probs=423.8

Q ss_pred             CCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEee
Q 005711           81 TGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELI  160 (681)
Q Consensus        81 ~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  160 (681)
                      +..++.|+++++.+++..+..+.++++|++|+|++|.+++..|..|+++++|++|+|++|++++..|.+|+++++|++|+
T Consensus        32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  111 (606)
T 3t6q_A           32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF  111 (606)
T ss_dssp             CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred             CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence            35799999999999998889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCccCCchhccccCCccEEEccCCcCccccCccccCCCCCCEEEccCccCcccccCc---CCccc--EEECCCC
Q 005711          161 LKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDF---YQSLL--VLNLGSN  235 (681)
Q Consensus       161 L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~---~~~L~--~L~L~~n  235 (681)
                      +++|. +.+..|..++++ ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..   +.+|+  .|++++|
T Consensus       112 L~~n~-i~~l~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n  189 (606)
T 3t6q_A          112 FIQTG-ISSIDFIPLHNQ-KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN  189 (606)
T ss_dssp             CTTSC-CSCGGGSCCTTC-TTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC
T ss_pred             ccccC-cccCCcchhccC-CcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCC
Confidence            99994 555556678888 89999999999999744445556999999999999999877654   44577  8999999


Q ss_pred             CCccccchhhccCCCCCEEEccCCccc--------------------------cCCChhhcccC--cccEEecCCCcccc
Q 005711          236 RFSGTLPCFAASAMSLTVLKLDNNSVV--------------------------GGIPTCIASLQ--ALTHLNLSHNHLNY  287 (681)
Q Consensus       236 ~l~~~~~~~~~~~~~L~~L~L~~n~l~--------------------------~~~p~~l~~l~--~L~~L~L~~n~l~~  287 (681)
                      .+++..|..+.. .+|++|++++|...                          ...+..+..+.  +|++|++++|.+++
T Consensus       190 ~l~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~  268 (606)
T 3t6q_A          190 DIAGIEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN  268 (606)
T ss_dssp             CCCEECTTTTTT-CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSS
T ss_pred             ccCccChhHhhh-ccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCc
Confidence            999877766554 67899998887511                          01112222222  78999999999998


Q ss_pred             ccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccc
Q 005711          288 EISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPAR  367 (681)
Q Consensus       288 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~  367 (681)
                      ..+..+..+++|++|++++|.++ .+|..+..+.   +|++|++++|.+++..|..+..+++|++|++++|.+.+.+|..
T Consensus       269 ~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~---~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  344 (606)
T 3t6q_A          269 ISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLS---TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG  344 (606)
T ss_dssp             CCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCT---TCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSS
T ss_pred             cCHHHhccccCCCEEeccCCccC-CCChhhcccc---cCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchh
Confidence            88888999999999999999998 7787776665   8999999999999888889999999999999999998777654


Q ss_pred             -cCCCCCCCEEEccCCcCcccc--CcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceecccc-ccCCC
Q 005711          368 -IGNLTYLQVIDLSHNMLSGSI--PLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPL-TLAGL  443 (681)
Q Consensus       368 -l~~l~~L~~L~Ls~n~l~~~~--p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l  443 (681)
                       +.++++|++|++++|.+++..  +..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+. .+..+
T Consensus       345 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l  424 (606)
T 3t6q_A          345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL  424 (606)
T ss_dssp             TTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTC
T ss_pred             hhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCc
Confidence             889999999999999998766  77889999999999999999999899999999999999999999987654 48899


Q ss_pred             CCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCccc---CCcccccCCccceeecccCccccCCCC-------Ccc
Q 005711          444 KSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGN---LPNWLFSFQAIQMMDFSTNKFMGFIPD-------AVG  513 (681)
Q Consensus       444 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~p~~~~~l~~L~~L~ls~n~~~~~~p~-------~~~  513 (681)
                      ++|++|++++|.+++..|..+..+++|++|++++|++.+.   .+..+..+++|+.|++++|++++..|.       ...
T Consensus       425 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  504 (606)
T 3t6q_A          425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH  504 (606)
T ss_dssp             TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCE
Confidence            9999999999999998899999999999999999999873   336788999999999999999876543       467


Q ss_pred             cccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCC
Q 005711          514 MDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIP  573 (681)
Q Consensus       514 L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p  573 (681)
                      |||++|++++.+|..+.++++| +|++++|++++.+|. +..+++|+.|++++|.+++..+
T Consensus       505 L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          505 VDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             EECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             EECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            9999999999999999999999 999999999988888 8889999999999999997655

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=9.3e-55  Score=498.36  Aligned_cols=499  Identities=19%  Similarity=0.232  Sum_probs=307.7

Q ss_pred             CHHhHHHHHHHHhcCCCCCCCCCCCC--C----CCC--CCC------------CceeecCCCCcEEEEEcCCCCCccccc
Q 005711           40 NLEDKASLLLFKSLVQDPTQKLSSWV--G----SNC--TNW------------TGVACNFQTGHVVSINLTDTSLSGQVH   99 (681)
Q Consensus        40 ~~~~~~~l~~~~~~~~~~~~~~~~w~--~----~~c--c~w------------~gv~c~~~~~~v~~L~L~~~~l~g~~~   99 (681)
                      ..+|++||++||+++.+|     +|.  +    .+|  |.|            .||+|+. .+||++|+|+++++.|.+|
T Consensus       267 ~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~ip  340 (876)
T 4ecn_A          267 YIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGRVP  340 (876)
T ss_dssp             HHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEEEC
T ss_pred             chHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCCcCc
Confidence            346777999999999776     783  2    245  999            9999984 7899999999999999999


Q ss_pred             ccccCCCCCCEEEC-CCCcCCccccccccCCC-CCCE--------------EE-ccCCCCCCc-----------CCcccc
Q 005711          100 PRLCKLSFLEFLVL-SSNAFTGRISTCFGGLS-GLKT--------------LD-LSYNKFVGV-----------VPDAIM  151 (681)
Q Consensus       100 ~~l~~l~~L~~L~L-s~n~l~~~~~~~~~~l~-~L~~--------------L~-Ls~n~l~~~-----------~p~~~~  151 (681)
                      +.+++|++|++|+| ++|.+.|..|..-.... .+..              ++ .....+.+.           .+....
T Consensus       341 ~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~  420 (876)
T 4ecn_A          341 DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKD  420 (876)
T ss_dssp             GGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCC
T ss_pred             hHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccc
Confidence            99999999999999 88988877442211110 0000              00 000000000           011111


Q ss_pred             CCCCCCEeeCCC--CCCCCccCCchhccccCCccEEEccCCcCcc-----------------ccCcccc--CCCCCCEEE
Q 005711          152 KLRNLRELILKG--NPELGGVFPGWVGNFSMNLEKLDFSFNSFCG-----------------EIPESLY--YLKSLKHLD  210 (681)
Q Consensus       152 ~l~~L~~L~L~~--n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~-----------------~~p~~l~--~l~~L~~L~  210 (681)
                      ....++.+.+..  | .+.+ +|..++++ ++|++|+|++|.+++                 .+|..++  ++++|++|+
T Consensus       421 ~~l~l~~l~l~~~~N-~L~~-IP~~l~~L-~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~  497 (876)
T 4ecn_A          421 SRISLKDTQIGNLTN-RITF-ISKAIQRL-TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE  497 (876)
T ss_dssp             CCCCCCTTTTTCCSC-EEEE-ECGGGGGC-TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred             cccchhhceeccccC-cccc-hhHHHhcC-CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEE
Confidence            222333333333  3 2333 66666666 666666666666665                 3666666  777777777


Q ss_pred             ccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCc-ccc-CCChhhcccC-------cccEEecC
Q 005711          211 LEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNS-VVG-GIPTCIASLQ-------ALTHLNLS  281 (681)
Q Consensus       211 L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~-l~~-~~p~~l~~l~-------~L~~L~L~  281 (681)
                      +++|.+.+.+                     |..+.++++|++|++++|+ +++ .+|..++.++       +|++|+++
T Consensus       498 Ls~N~l~~~i---------------------P~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls  556 (876)
T 4ecn_A          498 LYNCPNMTQL---------------------PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG  556 (876)
T ss_dssp             EESCTTCCSC---------------------CGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECC
T ss_pred             CcCCCCCccC---------------------hHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEee
Confidence            7666555443                     3344444444444444443 443 3444333332       44444444


Q ss_pred             CCccccccCc--cccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCC-CCEEeccCC
Q 005711          282 HNHLNYEISP--RLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKS-LQALFLSNN  358 (681)
Q Consensus       282 ~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~-L~~L~L~~n  358 (681)
                      +|.++ .+|.  .+..+++|+.|++++|.++ .+| .+..+.   +|+.|++++|.++ .+|..+..+++ |+.|++++|
T Consensus       557 ~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~---~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N  629 (876)
T 4ecn_A          557 YNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNV---KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHN  629 (876)
T ss_dssp             SSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTS---EESEEECCSSCCS-CCCTTSCEECTTCCEEECCSS
T ss_pred             CCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCC---cceEEECcCCccc-cchHHHhhccccCCEEECcCC
Confidence            44444 4444  4444444555555554444 444 333322   4555555555554 44444555554 555555555


Q ss_pred             ccccccccccCCCCC--CCEEEccCCcCccccCccc---c--cCCCcceeecccccccccCccc-cCCCCCccEEEcccC
Q 005711          359 LLIGEIPARIGNLTY--LQVIDLSHNMLSGSIPLNI---V--GCFQLLALIVNNNNLSGEIQPE-LDALDSLKILDISNN  430 (681)
Q Consensus       359 ~l~~~~~~~l~~l~~--L~~L~Ls~n~l~~~~p~~~---~--~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~Ls~n  430 (681)
                      .++ .+|..+..++.  |+.|++++|.+.+.+|...   .  .+++|+.|++++|.+.. +|.. +..+++|+.|++++|
T Consensus       630 ~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N  707 (876)
T 4ecn_A          630 KLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNN  707 (876)
T ss_dssp             CCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSC
T ss_pred             CCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCc-cCHHHHccCCCCCEEECCCC
Confidence            554 44444444332  5555555555554433211   1  22355666666666653 3332 346677777777777


Q ss_pred             cceeccccccCC--------CCCCcEEECCCCcCCCcchhhhh--cCCCCCEEEccCCcCcccCCcccccCCccceeecc
Q 005711          431 QISGEIPLTLAG--------LKSLEIVDFSSNNLSGSLNDAIT--KWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFS  500 (681)
Q Consensus       431 ~l~~~~p~~~~~--------l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls  500 (681)
                      .++ .+|..+..        +++|++|+|++|+++ .+|..+.  .+++|+.|+|++|++++ +|..+..+++|+.|+++
T Consensus       708 ~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls  784 (876)
T 4ecn_A          708 LMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIR  784 (876)
T ss_dssp             CCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECC
T ss_pred             cCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECC
Confidence            776 44443332        237888888888888 6677776  78888888888888886 78888888888888888


Q ss_pred             cCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCC
Q 005711          501 TNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSL  579 (681)
Q Consensus       501 ~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  579 (681)
                      +|+           ++++|++.+.+|..+.++++|+.|+|++|++ +.+|. +.  ++|+.|||++|++....+..+...
T Consensus       785 ~N~-----------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~  850 (876)
T 4ecn_A          785 HQR-----------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPY  850 (876)
T ss_dssp             CCB-----------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHH
T ss_pred             CCC-----------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHcccc
Confidence            886           6778888888898899999999999999998 57777 54  689999999998887766666665


Q ss_pred             CCCCeEecccCccee
Q 005711          580 QELTLLNLSYNSFSG  594 (681)
Q Consensus       580 ~~L~~L~ls~N~l~~  594 (681)
                      ..+..+.+.+|++..
T Consensus       851 ~~~~~~~L~~n~~~~  865 (876)
T 4ecn_A          851 IEAGMYVLLYDKTQD  865 (876)
T ss_dssp             HHTTCCEEECCTTSE
T ss_pred             ccchheeecCCCccc
Confidence            566667777776543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=9.9e-53  Score=474.25  Aligned_cols=518  Identities=20%  Similarity=0.194  Sum_probs=437.9

Q ss_pred             EEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCC
Q 005711           86 SINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNP  165 (681)
Q Consensus        86 ~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~  165 (681)
                      .++.++.+++ .+|..+.  +++++|++++|.+++..+..|+++++|++|++++|++++..|.+|.++++|++|++++| 
T Consensus        15 ~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n-   90 (606)
T 3vq2_A           15 TYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-   90 (606)
T ss_dssp             EEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-
T ss_pred             ceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC-
Confidence            3556666665 4555554  78999999999999988889999999999999999999888999999999999999999 


Q ss_pred             CCCccCCchhccccCCccEEEccCCcCccccCccccCCCCCCEEEccCccCcc-cccCcC---CcccEEECCCCCCcccc
Q 005711          166 ELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTG-NVHDFY---QSLLVLNLGSNRFSGTL  241 (681)
Q Consensus       166 ~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~~---~~L~~L~L~~n~l~~~~  241 (681)
                      .+.+..|..++++ ++|++|++++|.+++..+..++++++|++|++++|.+++ .+|..+   .+|++|++++|++++..
T Consensus        91 ~l~~~~p~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~  169 (606)
T 3vq2_A           91 PIQSFSPGSFSGL-TSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT  169 (606)
T ss_dssp             CCCCCCTTSSTTC-TTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEEC
T ss_pred             cccccChhhcCCc-ccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecC
Confidence            5667779999999 899999999999997777889999999999999999986 446544   56999999999999888


Q ss_pred             chhhccCCCCC----EEEccCCccccCCChhhcccCcccEEecCCCccc-cccCccccCCCCCcEEeccCCCccCC----
Q 005711          242 PCFAASAMSLT----VLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLN-YEISPRLVFFEKLLLLDLSFNDLSGP----  312 (681)
Q Consensus       242 ~~~~~~~~~L~----~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~----  312 (681)
                      +..+..+++|+    +|++++|.+++..+..+... +|++|++++|.++ +..|..+..++.|+.+++..+.+.+.    
T Consensus       170 ~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~  248 (606)
T 3vq2_A          170 VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE  248 (606)
T ss_dssp             TTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS
T ss_pred             hhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCccc
Confidence            88777766554    89999999987665555544 8999999999887 45677788999999988865544321    


Q ss_pred             --CChhhhhcccCCCccEEEc-cCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccC
Q 005711          313 --LPSKIAQTTEKAGLVLLDL-SHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIP  389 (681)
Q Consensus       313 --~p~~~~~~~~~~~L~~L~L-s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p  389 (681)
                        .+..+..+... .++.+++ ..+.+.+.+|. +..+++|+.|++++|.+. .+| .+..+++|++|++++|.+ +.+|
T Consensus       249 ~~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp  323 (606)
T 3vq2_A          249 IFEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP  323 (606)
T ss_dssp             CCCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC
T ss_pred             ccChHHhhhhhhc-cHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccc
Confidence              11222222222 4777888 78888888887 889999999999999986 455 789999999999999999 6888


Q ss_pred             cccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceec--cccccCCCCCCcEEECCCCcCCCcchhhhhcC
Q 005711          390 LNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGE--IPLTLAGLKSLEIVDFSSNNLSGSLNDAITKW  467 (681)
Q Consensus       390 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  467 (681)
                       .+ .+++|+.|++++|...+.+  .+..+++|+.|++++|.+++.  +|..+..+++|++|++++|.+++ +|..+..+
T Consensus       324 -~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l  398 (606)
T 3vq2_A          324 -TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGL  398 (606)
T ss_dssp             -CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTC
T ss_pred             -cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCC
Confidence             45 9999999999999766555  567899999999999999876  47888999999999999999885 66888999


Q ss_pred             CCCCEEEccCCcCcccCC-cccccCCccceeecccCccccCCC-------CCcccccCCccccc-cCCccccccccccee
Q 005711          468 TNLKYFSIARNKLSGNLP-NWLFSFQAIQMMDFSTNKFMGFIP-------DAVGMDLSDNLLHG-TIPKGLFQLQGLEYL  538 (681)
Q Consensus       468 ~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~ls~n~~~~~~p-------~~~~L~Ls~N~l~g-~ip~~l~~l~~L~~L  538 (681)
                      ++|++|++++|++.+..| ..+..+++|+.|++++|++.+..|       ..+.|++++|++++ .+|..+..+++|++|
T Consensus       399 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  478 (606)
T 3vq2_A          399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL  478 (606)
T ss_dssp             TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred             CCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEE
Confidence            999999999999998877 688899999999999999987654       34689999999998 479999999999999


Q ss_pred             ecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccCcceeeCCCC-CCCC-Cccc-cccCCCC
Q 005711          539 NLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWK-QGYQ-KFPG-AFAGNPN  614 (681)
Q Consensus       539 ~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~-~~~~-~~~gn~~  614 (681)
                      +|++|++++.+|. +..+++|+.|++++|++++.+|..+..+++|++|++++|+++. +|.. ..+. .+.. .+.|||.
T Consensus       479 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~p~~~~~l~~~L~~l~l~~N~~  557 (606)
T 3vq2_A          479 DLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGILQHFPKSLAFFNLTNNSV  557 (606)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC-EESCGGGSCTTCCEEECCSCCC
T ss_pred             ECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc-cCHhHhhhcccCcEEEccCCCc
Confidence            9999999998888 8999999999999999999999999999999999999999985 4543 2222 2344 7899999


Q ss_pred             CCCCCC
Q 005711          615 LCLESS  620 (681)
Q Consensus       615 lc~~~~  620 (681)
                      .|..+.
T Consensus       558 ~c~c~~  563 (606)
T 3vq2_A          558 ACICEH  563 (606)
T ss_dssp             CCSSTT
T ss_pred             ccCCcc
Confidence            986543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=4.1e-51  Score=476.55  Aligned_cols=514  Identities=22%  Similarity=0.236  Sum_probs=434.9

Q ss_pred             EEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcC-CccccCCCCCCEeeCCCCC
Q 005711           87 INLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVV-PDAIMKLRNLRELILKGNP  165 (681)
Q Consensus        87 L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~  165 (681)
                      .+.++++++. +|.   ..+++++|||++|.+++..|..|+++++|++|+|++|.+.+.+ |.+|.++++|++|+|++| 
T Consensus         9 ~dcs~~~L~~-vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-   83 (844)
T 3j0a_A            9 AFYRFCNLTQ-VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-   83 (844)
T ss_dssp             EEESCCCSSC-CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-
T ss_pred             EEccCCCCCC-CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-
Confidence            4455666664 454   4579999999999999999999999999999999999766666 788999999999999999 


Q ss_pred             CCCccCCchhccccCCccEEEccCCcCccccCcc--ccCCCCCCEEEccCccCcccccC----cCCcccEEECCCCCCcc
Q 005711          166 ELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPES--LYYLKSLKHLDLEKNNLTGNVHD----FYQSLLVLNLGSNRFSG  239 (681)
Q Consensus       166 ~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~~~----~~~~L~~L~L~~n~l~~  239 (681)
                      .+.+..|..++++ ++|++|++++|.+++.+|..  +.++++|++|++++|.+++..+.    .+.+|++|++++|.+++
T Consensus        84 ~l~~~~p~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~  162 (844)
T 3j0a_A           84 KIYFLHPDAFQGL-FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL  162 (844)
T ss_dssp             CCCEECTTSSCSC-SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred             cCcccCHhHccCC-cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence            5677789999999 99999999999999877765  99999999999999999887543    35669999999999998


Q ss_pred             ccchhhccC--CCCCEEEccCCccccCCChhhcccCc------ccEEecCCCccccccCccccC---CCCCcEEeccCCC
Q 005711          240 TLPCFAASA--MSLTVLKLDNNSVVGGIPTCIASLQA------LTHLNLSHNHLNYEISPRLVF---FEKLLLLDLSFND  308 (681)
Q Consensus       240 ~~~~~~~~~--~~L~~L~L~~n~l~~~~p~~l~~l~~------L~~L~L~~n~l~~~~~~~l~~---l~~L~~L~L~~n~  308 (681)
                      ..+..+..+  ++|+.|++++|.+.+..|..++.+.+      |+.|++++|.+++..+..+..   ...++.+.++.+.
T Consensus       163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~  242 (844)
T 3j0a_A          163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI  242 (844)
T ss_dssp             CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred             eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence            888888877  89999999999999888887777665      999999999998888776654   3567888876332


Q ss_pred             ---------ccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEc
Q 005711          309 ---------LSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDL  379 (681)
Q Consensus       309 ---------l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  379 (681)
                               +.+..+..+..+. .++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..|.++++|++|++
T Consensus       243 ~~~~~~~~~l~~~~~~~f~~l~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L  321 (844)
T 3j0a_A          243 MGAGFGFHNIKDPDQNTFAGLA-RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL  321 (844)
T ss_dssp             CBCSSSCSSSTTGGGTTTTTTT-TSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEE
T ss_pred             ccccccccccCCCChhhhhccc-cCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEEC
Confidence                     2222222333221 248999999999999888899999999999999999999988999999999999999


Q ss_pred             cCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCc
Q 005711          380 SHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGS  459 (681)
Q Consensus       380 s~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~  459 (681)
                      ++|.+++..|..+.++++|+.|++++|.+.+..+..+..+++|+.|++++|.+++.     ..+++|+.|++++|+++ .
T Consensus       322 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~  395 (844)
T 3j0a_A          322 SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-T  395 (844)
T ss_dssp             ESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-C
T ss_pred             CCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-c
Confidence            99999988899999999999999999999988888899999999999999999842     23889999999999998 4


Q ss_pred             chhhhhcCCCCCEEEccCCcCcccC-CcccccCCccceeecccCccccCC--------CCCcccccCCcccc-----ccC
Q 005711          460 LNDAITKWTNLKYFSIARNKLSGNL-PNWLFSFQAIQMMDFSTNKFMGFI--------PDAVGMDLSDNLLH-----GTI  525 (681)
Q Consensus       460 ~~~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~ls~n~~~~~~--------p~~~~L~Ls~N~l~-----g~i  525 (681)
                      +|..   ..+++.|++++|.+++.. +..+..+++|+.|++++|++++..        +....|+|++|.++     +..
T Consensus       396 l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~  472 (844)
T 3j0a_A          396 LPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELC  472 (844)
T ss_dssp             CCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCC
T ss_pred             cccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccc
Confidence            4543   568999999999998632 334568999999999999998543        44578999999997     455


Q ss_pred             CcccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccCcceeeCCCCCCCCC
Q 005711          526 PKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQK  604 (681)
Q Consensus       526 p~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~  604 (681)
                      |..+.++++|+.|+|++|++++.+|. +..+++|+.|+|++|++++..|..+.  ++|+.|++++|++++.+|..  +..
T Consensus       473 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~  548 (844)
T 3j0a_A          473 WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVS  548 (844)
T ss_dssp             SSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSS
T ss_pred             hhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCC
Confidence            66788999999999999999988888 88999999999999999988777766  89999999999999998854  445


Q ss_pred             ccc-cccCCCCCCCCCC
Q 005711          605 FPG-AFAGNPNLCLESS  620 (681)
Q Consensus       605 ~~~-~~~gn~~lc~~~~  620 (681)
                      +.. .+.|||..|..+.
T Consensus       549 L~~l~l~~Np~~C~c~~  565 (844)
T 3j0a_A          549 LSVLDITHNKFICECEL  565 (844)
T ss_dssp             CCEEEEEEECCCCSSSC
T ss_pred             cCEEEecCCCccccccc
Confidence            555 8999999996543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2e-50  Score=450.05  Aligned_cols=483  Identities=19%  Similarity=0.189  Sum_probs=330.3

Q ss_pred             CCCCCceeecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCc
Q 005711           69 CTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPD  148 (681)
Q Consensus        69 cc~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~  148 (681)
                      .|.|.|+ |+          .++++++ .+|..+.  ++|++|++++|.+++..|..|+++++|++|++++|++++..|.
T Consensus         3 ~C~~~~~-c~----------~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~   68 (549)
T 2z81_A            3 SCDASGV-CD----------GRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD   68 (549)
T ss_dssp             EECTTSE-EE----------CTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred             cCCCCce-EE----------CCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence            3789888 86          3344444 4565554  7899999999999988888999999999999999999988888


Q ss_pred             cccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCCcCcc-ccCccccCCCCCCEEEccCccCccccc-CcC--
Q 005711          149 AIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCG-EIPESLYYLKSLKHLDLEKNNLTGNVH-DFY--  224 (681)
Q Consensus       149 ~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~~--  224 (681)
                      +|.++++|++|++++| .+.+..|..++++ ++|++|++++|.+++ ..|..++++++|++|++++|.+.+.++ ..+  
T Consensus        69 ~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~  146 (549)
T 2z81_A           69 AFYSLGSLEHLDLSDN-HLSSLSSSWFGPL-SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG  146 (549)
T ss_dssp             TTTTCTTCCEEECTTS-CCCSCCHHHHTTC-TTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred             hccccccCCEEECCCC-ccCccCHHHhccC-CCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhc
Confidence            9999999999999999 5566666778888 899999999999986 467789999999999999987443332 222  


Q ss_pred             -CcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChh-hcccCcccEEecCCCcccccc--C-ccccCCCCC
Q 005711          225 -QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTC-IASLQALTHLNLSHNHLNYEI--S-PRLVFFEKL  299 (681)
Q Consensus       225 -~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~--~-~~l~~l~~L  299 (681)
                       .+|++|++++|.+++..|..+..+++|++|++++|.+.. +|.. +..+++|++|++++|.+++..  + .....+++|
T Consensus       147 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L  225 (549)
T 2z81_A          147 LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPM  225 (549)
T ss_dssp             CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCC
T ss_pred             ccccCeeeccCCcccccChhhhhccccCceEecccCcccc-cchhhHhhcccccEEEccCCccccccccccchhhhhhcc
Confidence             235555555555555555555555555555555554432 2222 233455555555555544321  1 111223444


Q ss_pred             cEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCcccccc------ccccCCCCC
Q 005711          300 LLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEI------PARIGNLTY  373 (681)
Q Consensus       300 ~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~------~~~l~~l~~  373 (681)
                      +.|++++|.+++..+..+.                       ..+..+++|+.+++++|.+.+..      ...+..+++
T Consensus       226 ~~L~l~~n~l~~~~~~~l~-----------------------~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~  282 (549)
T 2z81_A          226 KKLAFRGSVLTDESFNELL-----------------------KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGK  282 (549)
T ss_dssp             CEEEEESCEEEHHHHHHHH-----------------------GGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTT
T ss_pred             cceeccccccchhHHHHHH-----------------------HHhhhhccccccccccccccccccccccchhhhhhhcc
Confidence            4444444444433222221                       12233455555555555544321      112344556


Q ss_pred             CCEEEccCCcCccc-----cCcccccCCCcceeecccccccccCcccc-CCCCCccEEEcccCcceeccc---cccCCCC
Q 005711          374 LQVIDLSHNMLSGS-----IPLNIVGCFQLLALIVNNNNLSGEIQPEL-DALDSLKILDISNNQISGEIP---LTLAGLK  444 (681)
Q Consensus       374 L~~L~Ls~n~l~~~-----~p~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~p---~~~~~l~  444 (681)
                      |+.+++.++.+...     ++..+....+|+.+++++|.+. .+|..+ ..+++|+.|++++|.+.+.+|   ..++.++
T Consensus       283 L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~  361 (549)
T 2z81_A          283 VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP  361 (549)
T ss_dssp             CCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSST
T ss_pred             cccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccc
Confidence            66666666554321     1111233456777777777765 444443 467778888888887776654   3366777


Q ss_pred             CCcEEECCCCcCCCcch--hhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccccC---C-CCCcccccCC
Q 005711          445 SLEIVDFSSNNLSGSLN--DAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGF---I-PDAVGMDLSD  518 (681)
Q Consensus       445 ~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~---~-p~~~~L~Ls~  518 (681)
                      +|++|++++|++++..+  ..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++++.   + +....||+++
T Consensus       362 ~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~  440 (549)
T 2z81_A          362 SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSN  440 (549)
T ss_dssp             TCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCS
T ss_pred             cCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccchhcCCceEEECCC
Confidence            88888888888775432  45677788888888888777 5777777777888888888876532   2 3456788888


Q ss_pred             ccccccCCcccccccccceeecCCCcCcccCCCcCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccCcceeeCCC
Q 005711          519 NLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPW  598 (681)
Q Consensus       519 N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  598 (681)
                      |++++.+    ..+++|++|+|++|+++ .+|....+++|+.|++++|++++.+|..+..+++|+.|++++|++.|.+|.
T Consensus       441 N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  515 (549)
T 2z81_A          441 NNLDSFS----LFLPRLQELYISRNKLK-TLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  515 (549)
T ss_dssp             SCCSCCC----CCCTTCCEEECCSSCCS-SCCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred             CChhhhc----ccCChhcEEECCCCccC-cCCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence            8888643    47899999999999999 788877899999999999999999999999999999999999999999873

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=8.2e-50  Score=447.23  Aligned_cols=490  Identities=22%  Similarity=0.212  Sum_probs=356.8

Q ss_pred             CCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEee
Q 005711           81 TGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELI  160 (681)
Q Consensus        81 ~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  160 (681)
                      +.+++.|+++++.+.+..+..+.++++|++|++++|.+++..+..|+++++|++|+|++|.+++..|.+|+++++|++|+
T Consensus        27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (570)
T 2z63_A           27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (570)
T ss_dssp             CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence            34688889999888887777888889999999999888887788888899999999999988877778888899999999


Q ss_pred             CCCCCCCCccCCchhccccCCccEEEccCCcCcc-ccCccccCCCCCCEEEccCccCcccccCcCC---cc----cEEEC
Q 005711          161 LKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCG-EIPESLYYLKSLKHLDLEKNNLTGNVHDFYQ---SL----LVLNL  232 (681)
Q Consensus       161 L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~---~L----~~L~L  232 (681)
                      +++|. +.+..+..++++ ++|++|++++|.+++ .+|..++++++|++|++++|.+++..+..+.   +|    +.+++
T Consensus       107 L~~n~-l~~l~~~~~~~l-~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l  184 (570)
T 2z63_A          107 AVETN-LASLENFPIGHL-KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL  184 (570)
T ss_dssp             CTTSC-CCCSTTCSCTTC-TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred             ccccc-cccCCCcccccc-ccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhccc
Confidence            98884 444334457777 889999999888876 4688888888999999988888877665543   34    67788


Q ss_pred             CCCCCccccchhhccCCCCCEEEccCCcccc-CCChhhcccCcccEEecCCCccc------cccCccccCCC--CCcEEe
Q 005711          233 GSNRFSGTLPCFAASAMSLTVLKLDNNSVVG-GIPTCIASLQALTHLNLSHNHLN------YEISPRLVFFE--KLLLLD  303 (681)
Q Consensus       233 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~------~~~~~~l~~l~--~L~~L~  303 (681)
                      ++|.+++..+..+... +|+.|++++|.... .++..+..+++++.+.+....+.      ......+..++  .++.++
T Consensus       185 ~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~  263 (570)
T 2z63_A          185 SLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR  263 (570)
T ss_dssp             TTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEE
T ss_pred             CCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhh
Confidence            8888877666666554 68888887774332 34455666666665554332211      11111122222  245556


Q ss_pred             ccCC-CccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCC
Q 005711          304 LSFN-DLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHN  382 (681)
Q Consensus       304 L~~n-~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n  382 (681)
                      ++++ .+.+..|..+..+.   +|+.|++++|.++ .+|..+..+ +|++|++++|.+. .+|.  ..+++|+.|++++|
T Consensus       264 l~~~~~~~~~~~~~~~~l~---~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n  335 (570)
T 2z63_A          264 LAYLDYYLDDIIDLFNCLT---NVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSN  335 (570)
T ss_dssp             EEETTEEESCSTTTTGGGT---TCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESC
T ss_pred             hhcchhhhhhchhhhcCcC---cccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCC
Confidence            6655 55566666665555   6777777777776 466666666 7777777777766 4443  35667777777777


Q ss_pred             cCccccCcccccCCCcceeecccccccccC--ccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcc
Q 005711          383 MLSGSIPLNIVGCFQLLALIVNNNNLSGEI--QPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSL  460 (681)
Q Consensus       383 ~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~  460 (681)
                      .+.+..+.  ..+++|+.|++++|.+++..  +..+..+++|+.|++++|.+.+..+. +..+++|++|++++|.+.+..
T Consensus       336 ~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~  412 (570)
T 2z63_A          336 KGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMS  412 (570)
T ss_dssp             BSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCT
T ss_pred             cccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCcccccc
Confidence            76655554  56667777777777766543  45566677777777777777654433 667777777777777776554


Q ss_pred             h-hhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceee
Q 005711          461 N-DAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLN  539 (681)
Q Consensus       461 ~-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~  539 (681)
                      + ..+..+++|++|++++|.+.+..|..+..+++|+.|++++|++.+                +.+|..+..+++|++|+
T Consensus       413 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------------~~~p~~~~~l~~L~~L~  476 (570)
T 2z63_A          413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE----------------NFLPDIFTELRNLTFLD  476 (570)
T ss_dssp             TSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG----------------GEECSCCTTCTTCCEEE
T ss_pred             chhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCcc----------------ccchhhhhcccCCCEEE
Confidence            4 456667777777777777776666666666666666666655431                46888899999999999


Q ss_pred             cCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccCcceeeCCCCC
Q 005711          540 LSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQ  600 (681)
Q Consensus       540 Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~  600 (681)
                      +++|++++.+|. +..+++|+.|++++|++++..|..+..+++|+.|++++|+++|.+|..+
T Consensus       477 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~  538 (570)
T 2z63_A          477 LSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID  538 (570)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred             CCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchH
Confidence            999999988887 8999999999999999999988899999999999999999999998644

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.2e-49  Score=448.98  Aligned_cols=469  Identities=19%  Similarity=0.217  Sum_probs=372.2

Q ss_pred             CCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCC------C------cCCccccCCCCCCEeeCCCCCCCCccCCc
Q 005711          106 SFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFV------G------VVPDAIMKLRNLRELILKGNPELGGVFPG  173 (681)
Q Consensus       106 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~------~------~~p~~~~~l~~L~~L~L~~n~~~~~~~p~  173 (681)
                      .+++.|+|+++.+.|.+|.+++++++|++|+|++|.+.      +      .+|...  +..|+ +++++| .+.+.+|.
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~-~l~~~~~~  156 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKT-FVDYDPRE  156 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHH-HTCCCGGG
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHh-hhccCchh
Confidence            47899999999999999999999999999999999762      2      333333  34455 566655 44455555


Q ss_pred             hhccccCCccEEEccCCcCccccCccccCCCCCCEEEcc--CccCcccccCcC---CcccEEECCCCCCccc-cchhhcc
Q 005711          174 WVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLE--KNNLTGNVHDFY---QSLLVLNLGSNRFSGT-LPCFAAS  247 (681)
Q Consensus       174 ~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~--~n~l~~~~~~~~---~~L~~L~L~~n~l~~~-~~~~~~~  247 (681)
                      .+..+...+..+++....+.      ......++.+.+.  .|.+++ +|..+   .+|++|++++|++++. ++.....
T Consensus       157 ~~~~~~~~l~~~~l~~~~~~------~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~  229 (636)
T 4eco_A          157 DFSDLIKDCINSDPQQKSIK------KSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN  229 (636)
T ss_dssp             GSCHHHHHHHHHCTTSCCCC------CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSC
T ss_pred             hHHHHHHHHhhcCccccccc------cccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccc
Confidence            44432223333333322221      1111223333333  578888 77655   4599999999999873 2211110


Q ss_pred             CCCCCEEEccCCccccCCChhhc--ccCcccEEecCCCccccccCccccCCCCCcEEeccCCC-ccC-CCChhhhhc---
Q 005711          248 AMSLTVLKLDNNSVVGGIPTCIA--SLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFND-LSG-PLPSKIAQT---  320 (681)
Q Consensus       248 ~~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~p~~~~~~---  320 (681)
                              -+.+...+.+|..++  ++++|++|++++|.+.+.+|..++.+++|++|++++|. ++| .+|..++.+   
T Consensus       230 --------~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~  301 (636)
T 4eco_A          230 --------ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADA  301 (636)
T ss_dssp             --------TTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHS
T ss_pred             --------cccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhcc
Confidence                    012233445899988  99999999999999999999999999999999999998 998 899988876   


Q ss_pred             ccCCCccEEEccCCCCcCCCcc--cccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCC-
Q 005711          321 TEKAGLVLLDLSHNRFSGEIPL--KITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQ-  397 (681)
Q Consensus       321 ~~~~~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~-  397 (681)
                      ..+++|++|++++|+++ .+|.  .++.+++|++|++++|+++|.+| .++.+++|++|++++|.++ .+|..+..+++ 
T Consensus       302 ~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~  378 (636)
T 4eco_A          302 PVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQ  378 (636)
T ss_dssp             GGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTT
T ss_pred             ccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhccc
Confidence            12238999999999999 8998  89999999999999999999999 8999999999999999999 89999999999 


Q ss_pred             cceeecccccccccCccccCCCC--CccEEEcccCcceeccccccC-------CCCCCcEEECCCCcCCCcchhhhhcCC
Q 005711          398 LLALIVNNNNLSGEIQPELDALD--SLKILDISNNQISGEIPLTLA-------GLKSLEIVDFSSNNLSGSLNDAITKWT  468 (681)
Q Consensus       398 L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~p~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~~l~  468 (681)
                      |+.|++++|.++ .+|..+..++  +|+.|++++|.+.+.+|..+.       .+++|++|++++|++++..+..+..++
T Consensus       379 L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~  457 (636)
T 4eco_A          379 VENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGS  457 (636)
T ss_dssp             CCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTC
T ss_pred             CcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCC
Confidence            999999999999 7888777655  899999999999999998888       888999999999999955455566799


Q ss_pred             CCCEEEccCCcCcccCCcccccC--------CccceeecccCccccCCCCCcccccCCccccccCCcccc--ccccccee
Q 005711          469 NLKYFSIARNKLSGNLPNWLFSF--------QAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLF--QLQGLEYL  538 (681)
Q Consensus       469 ~L~~L~L~~n~l~~~~p~~~~~l--------~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~--~l~~L~~L  538 (681)
                      +|++|++++|+++ .+|......        ++|+.|++++|+++                  .+|..+.  .+++|++|
T Consensus       458 ~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~------------------~lp~~~~~~~l~~L~~L  518 (636)
T 4eco_A          458 PLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT------------------KLSDDFRATTLPYLVGI  518 (636)
T ss_dssp             CCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC------------------BCCGGGSTTTCTTCCEE
T ss_pred             CCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC------------------ccChhhhhccCCCcCEE
Confidence            9999999999999 666554432        27777777666654                  6788887  89999999


Q ss_pred             ecCCCcCcccCCC-cCCCCCCCEEEC------CCCcCcccCCccccCCCCCCeEecccCcceeeCCCCCCCCCccc-ccc
Q 005711          539 NLSFNFLDGQVPG-LYRLRSLRALDL------SHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPG-AFA  610 (681)
Q Consensus       539 ~Ls~N~l~~~ip~-~~~l~~L~~L~L------s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~-~~~  610 (681)
                      +|++|++++ +|. ++.+++|+.|++      ++|++.+.+|..+..+++|++|++++|++ +.+|.... ..+.. .+.
T Consensus       519 ~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~-~~L~~L~Ls  595 (636)
T 4eco_A          519 DLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT-PNISVLDIK  595 (636)
T ss_dssp             ECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-TTCCEEECC
T ss_pred             ECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh-CcCCEEECc
Confidence            999999998 777 999999999999      56889999999999999999999999999 78886532 44545 889


Q ss_pred             CCCCCCCCC
Q 005711          611 GNPNLCLES  619 (681)
Q Consensus       611 gn~~lc~~~  619 (681)
                      +|+..|...
T Consensus       596 ~N~l~~~~~  604 (636)
T 4eco_A          596 DNPNISIDL  604 (636)
T ss_dssp             SCTTCEEEC
T ss_pred             CCCCccccH
Confidence            999887544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=7.6e-47  Score=423.16  Aligned_cols=490  Identities=20%  Similarity=0.188  Sum_probs=365.1

Q ss_pred             ccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhcc
Q 005711           98 VHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGN  177 (681)
Q Consensus        98 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~  177 (681)
                      +|..+.  +++++|++++|.+++..+..|.++++|++|+|++|++++..|..|.++++|++|++++| .+.+..|..++.
T Consensus        22 ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~   98 (570)
T 2z63_A           22 IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSG   98 (570)
T ss_dssp             CCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTT
T ss_pred             cCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCCccCHhhhcC
Confidence            454443  57999999999999988889999999999999999999888889999999999999999 456667788888


Q ss_pred             ccCCccEEEccCCcCccccCccccCCCCCCEEEccCccCccc-ccCcC---CcccEEECCCCCCccccchhhccCCCC--
Q 005711          178 FSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGN-VHDFY---QSLLVLNLGSNRFSGTLPCFAASAMSL--  251 (681)
Q Consensus       178 l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~~~~~---~~L~~L~L~~n~l~~~~~~~~~~~~~L--  251 (681)
                      + ++|++|++++|.+++..+..++++++|++|++++|.+++. +|..+   .+|++|++++|.+++..+..+..+++|  
T Consensus        99 l-~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  177 (570)
T 2z63_A           99 L-SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL  177 (570)
T ss_dssp             C-TTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTT
T ss_pred             c-cccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccch
Confidence            8 8999999999999866555799999999999999998863 45543   457888888888877777777777777  


Q ss_pred             --CEEEccCCccccCCChhhcccCcccEEecCCCcccc-ccCccccCCCCCcEEeccCCCcc------CCCChhhhhccc
Q 005711          252 --TVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNY-EISPRLVFFEKLLLLDLSFNDLS------GPLPSKIAQTTE  322 (681)
Q Consensus       252 --~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~------~~~p~~~~~~~~  322 (681)
                        +.|++++|.+.+..|..+... +|++|++++|.... .++..+..++.++...+....+.      ......+..+..
T Consensus       178 ~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~  256 (570)
T 2z63_A          178 LNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN  256 (570)
T ss_dssp             CCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGG
T ss_pred             hhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccc
Confidence              778888888777666666555 68888887764332 23444555666665554432221      111112222221


Q ss_pred             CCCccEEEccCC-CCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCccee
Q 005711          323 KAGLVLLDLSHN-RFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLAL  401 (681)
Q Consensus       323 ~~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L  401 (681)
                      . .++.++++++ .+.+..|..+..+++|++|++++|.+. .+|..+..+ +|++|++++|.+. .+|.  ..+++|+.+
T Consensus       257 l-~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L  330 (570)
T 2z63_A          257 L-TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRL  330 (570)
T ss_dssp             S-EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEE
T ss_pred             c-chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEE
Confidence            1 3666777777 666677777777788888888888776 466667777 7888888888776 4554  356777777


Q ss_pred             ecccccccccCccccCCCCCccEEEcccCcceecc--ccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCc
Q 005711          402 IVNNNNLSGEIQPELDALDSLKILDISNNQISGEI--PLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNK  479 (681)
Q Consensus       402 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  479 (681)
                      ++++|.+.+..+.  ..+++|+.|++++|.+++..  |..+.++++|++|++++|.+.+..+. +..+++|++|++++|.
T Consensus       331 ~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~  407 (570)
T 2z63_A          331 TFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSN  407 (570)
T ss_dssp             EEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSE
T ss_pred             eCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCc
Confidence            7777777665554  56677777777777776543  56667777777777777777654443 6777777777777777


Q ss_pred             CcccCC-cccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCc-ccCCC-cCCCC
Q 005711          480 LSGNLP-NWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLD-GQVPG-LYRLR  556 (681)
Q Consensus       480 l~~~~p-~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~-~~ip~-~~~l~  556 (681)
                      +.+..| ..+..+++|+.|++++|.                 +++.+|..+..+++|++|++++|+++ +.+|. +..++
T Consensus       408 l~~~~~~~~~~~l~~L~~L~l~~n~-----------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~  470 (570)
T 2z63_A          408 LKQMSEFSVFLSLRNLIYLDISHTH-----------------TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR  470 (570)
T ss_dssp             EESCTTSCTTTTCTTCCEEECTTSC-----------------CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred             cccccchhhhhcCCCCCEEeCcCCc-----------------ccccchhhhhcCCcCcEEECcCCcCccccchhhhhccc
Confidence            766544 345566666666655554                 45567788899999999999999998 57887 89999


Q ss_pred             CCCEEECCCCcCcccCCccccCCCCCCeEecccCcceeeCCCC-CCCCCccc-cccCCCCCCCC
Q 005711          557 SLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWK-QGYQKFPG-AFAGNPNLCLE  618 (681)
Q Consensus       557 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~~~~-~~~gn~~lc~~  618 (681)
                      +|+.|++++|++++..|..+..+++|++|++++|++++..|.. ..+..+.. .+.+|+..|..
T Consensus       471 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  534 (570)
T 2z63_A          471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  534 (570)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred             CCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCC
Confidence            9999999999999999999999999999999999999876643 23344444 78899887743

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=3.5e-48  Score=428.79  Aligned_cols=456  Identities=20%  Similarity=0.178  Sum_probs=331.3

Q ss_pred             EEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCC
Q 005711           85 VSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN  164 (681)
Q Consensus        85 ~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n  164 (681)
                      +.||+++++++ .+|..+.  ++|++|++++|.+++..|..|.++++|++|+|++|++++..|.+|+++++|++|++++|
T Consensus         3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            36899999998 5777776  89999999999999888889999999999999999999888999999999999999999


Q ss_pred             CCCCccCCchhccccCCccEEEccCCcCcc-ccCccccCCCCCCEEEccCccCcccccCcCCcc--cEEECCCCCC--cc
Q 005711          165 PELGGVFPGWVGNFSMNLEKLDFSFNSFCG-EIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSL--LVLNLGSNRF--SG  239 (681)
Q Consensus       165 ~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L--~~L~L~~n~l--~~  239 (681)
                      ++ . .+|..  .+ ++|++|++++|.+++ .+|..++++++|++|++++|.+++.....+.+|  ++|++++|.+  .+
T Consensus        80 ~l-~-~lp~~--~l-~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~  154 (520)
T 2z7x_B           80 KL-V-KISCH--PT-VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEK  154 (520)
T ss_dssp             CC-C-EEECC--CC-CCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSS
T ss_pred             ce-e-ecCcc--cc-CCccEEeccCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccc
Confidence            54 3 56665  66 899999999999987 578999999999999999999876544444455  6666666666  55


Q ss_pred             ccchhhccCC-CCCEEEccCCccccCCCh-hhcccCcccEEecCCCc-------cccccCccccCCCCCcEEeccCCCcc
Q 005711          240 TLPCFAASAM-SLTVLKLDNNSVVGGIPT-CIASLQALTHLNLSHNH-------LNYEISPRLVFFEKLLLLDLSFNDLS  310 (681)
Q Consensus       240 ~~~~~~~~~~-~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~-------l~~~~~~~l~~l~~L~~L~L~~n~l~  310 (681)
                      ..|..+..+. ....+++++|.+.+.++. .+..+++|+.+++++|.       +.+.++ .+..+++|+.|++++|.++
T Consensus       155 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~  233 (520)
T 2z7x_B          155 EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETT  233 (520)
T ss_dssp             CCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEE
T ss_pred             cccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccC
Confidence            5555554443 222445555555443332 33445555555555554       333333 3444455555555444444


Q ss_pred             CCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCcccccccccc-----CCCCCCCEEEccCCcCc
Q 005711          311 GPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARI-----GNLTYLQVIDLSHNMLS  385 (681)
Q Consensus       311 ~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~l~  385 (681)
                      +..+..+...                       . ..++|++|++++|.++|.+|..+     +++++|+.+++++|.+ 
T Consensus       234 ~~~~~~~~~~-----------------------~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-  288 (520)
T 2z7x_B          234 WNSFIRILQL-----------------------V-WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-  288 (520)
T ss_dssp             HHHHHHHHHH-----------------------H-HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-
T ss_pred             HHHHHHHHHH-----------------------h-hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-
Confidence            3222111111                       0 12456666666666665555555     5666666666666666 


Q ss_pred             cccC-cccccC---CCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCC--c
Q 005711          386 GSIP-LNIVGC---FQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSG--S  459 (681)
Q Consensus       386 ~~~p-~~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~  459 (681)
                       .+| ..+..+   .+|+.|++++|.+.+...  ...+++|++|++++|.+++.+|..+..+++|++|++++|++++  .
T Consensus       289 -~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~  365 (520)
T 2z7x_B          289 -GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSK  365 (520)
T ss_dssp             -CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHH
T ss_pred             -ecchhhhhcccccCceeEEEcCCCccccccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcccc
Confidence             344 233332   456777777776654321  2577889999999999998888888999999999999999986  5


Q ss_pred             chhhhhcCCCCCEEEccCCcCcccCCcc-cccCCccceeecccCccccCCCCCcccccCCccccccCCccccccccccee
Q 005711          460 LNDAITKWTNLKYFSIARNKLSGNLPNW-LFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYL  538 (681)
Q Consensus       460 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L  538 (681)
                      +|..+..+++|++|++++|.+.+.+|.. +..+++|+.|++++|++++                 .+|..+.  ++|++|
T Consensus       366 ~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~-----------------~~~~~l~--~~L~~L  426 (520)
T 2z7x_B          366 IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD-----------------TIFRCLP--PRIKVL  426 (520)
T ss_dssp             HHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCG-----------------GGGGSCC--TTCCEE
T ss_pred             chHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCc-----------------chhhhhc--ccCCEE
Confidence            6778889999999999999998766654 6677788877777776654                 4454443  689999


Q ss_pred             ecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCcc-ccCCCCCCeEecccCcceeeCCC
Q 005711          539 NLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGN-ISSLQELTLLNLSYNSFSGFVPW  598 (681)
Q Consensus       539 ~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~~~~p~  598 (681)
                      ++++|+++ .+|. ++.+++|+.|++++|+++ .+|.. +..+++|++|++++|+++|.++.
T Consensus       427 ~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  486 (520)
T 2z7x_B          427 DLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR  486 (520)
T ss_dssp             ECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             ECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCCc
Confidence            99999999 6776 779999999999999999 46655 89999999999999999998864

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2e-46  Score=417.75  Aligned_cols=482  Identities=21%  Similarity=0.209  Sum_probs=352.8

Q ss_pred             CCCCCCCC-CCCCceeec--CCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEcc
Q 005711           62 SSWVGSNC-TNWTGVACN--FQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLS  138 (681)
Q Consensus        62 ~~w~~~~c-c~w~gv~c~--~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  138 (681)
                      +.|.+. | |++.+++.-  ....++++|+++++.+.+..+..+.++++|++|++++|.+++..|..|+++++|++|+++
T Consensus         4 C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls   82 (549)
T 2z81_A            4 CDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS   82 (549)
T ss_dssp             ECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred             CCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECC
Confidence            456444 3 334444331  133589999999999999888899999999999999999999889999999999999999


Q ss_pred             CCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCCcCccccC-ccccCCCCCCEEEccCccCc
Q 005711          139 YNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIP-ESLYYLKSLKHLDLEKNNLT  217 (681)
Q Consensus       139 ~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~  217 (681)
                      +|.+++..|..|+++++|++|++++|++.....|..++++ ++|++|++++|.+.+.+| ..+.++++|++|++++|.++
T Consensus        83 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~  161 (549)
T 2z81_A           83 DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL-TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR  161 (549)
T ss_dssp             TSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC-TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred             CCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhcc-CCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence            9999988777899999999999999965544677888888 899999999999555555 68999999999999999999


Q ss_pred             ccccCcCC---cccEEECCCCCCccccchhhccCCCCCEEEccCCccccCC--Ch-hhcccCcccEEecCCCccccccCc
Q 005711          218 GNVHDFYQ---SLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGI--PT-CIASLQALTHLNLSHNHLNYEISP  291 (681)
Q Consensus       218 ~~~~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~--p~-~l~~l~~L~~L~L~~n~l~~~~~~  291 (681)
                      +..|..+.   +|++|+++.|.+.......+..+++|++|++++|++++..  |. ....+++|++|++++|.+++..+.
T Consensus       162 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  241 (549)
T 2z81_A          162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN  241 (549)
T ss_dssp             EECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHH
T ss_pred             ccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHH
Confidence            98887764   4899999999986433334467899999999999998742  22 234578999999999998875443


Q ss_pred             ----cccCCCCCcEEeccCCCccCCCC---hhhhhcccCCCccEEEccCCCCcCC-----CcccccCCCCCCEEeccCCc
Q 005711          292 ----RLVFFEKLLLLDLSFNDLSGPLP---SKIAQTTEKAGLVLLDLSHNRFSGE-----IPLKITELKSLQALFLSNNL  359 (681)
Q Consensus       292 ----~l~~l~~L~~L~L~~n~l~~~~p---~~~~~~~~~~~L~~L~Ls~n~l~~~-----~p~~l~~l~~L~~L~L~~n~  359 (681)
                          .+..+++|+.+++++|.+.+...   ..........+++.|++.++.+...     ++..+...++|++|++++|.
T Consensus       242 ~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~  321 (549)
T 2z81_A          242 ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK  321 (549)
T ss_dssp             HHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC
T ss_pred             HHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc
Confidence                34667899999999998875311   1111223334777888877766532     11112234567777777777


Q ss_pred             ccccccccc-CCCCCCCEEEccCCcCccccCc---ccccCCCcceeecccccccccCc--cccCCCCCccEEEcccCcce
Q 005711          360 LIGEIPARI-GNLTYLQVIDLSHNMLSGSIPL---NIVGCFQLLALIVNNNNLSGEIQ--PELDALDSLKILDISNNQIS  433 (681)
Q Consensus       360 l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~p~---~~~~~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~  433 (681)
                      +. .+|..+ .++++|++|++++|.+++.+|.   .+..+++|+.|++++|.+++..+  ..+..+++|+.|++++|+++
T Consensus       322 l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~  400 (549)
T 2z81_A          322 VF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH  400 (549)
T ss_dssp             CC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             cc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc
Confidence            65 455444 4577777777777777765532   34556667777777766655322  33556666666666666666


Q ss_pred             eccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccccCCCCCcc
Q 005711          434 GEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVG  513 (681)
Q Consensus       434 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~  513 (681)
                       .+|..+..+++|++|++++|++++ +|..+  .++|++|++++|++++.+    ..+++|+.|++++            
T Consensus       401 -~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~------------  460 (549)
T 2z81_A          401 -PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISR------------  460 (549)
T ss_dssp             -CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCS------------
T ss_pred             -cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCC------------
Confidence             456666666666666666666652 23222  245666666666665432    2445555555555            


Q ss_pred             cccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCC
Q 005711          514 MDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIP  573 (681)
Q Consensus       514 L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p  573 (681)
                           |+++ .+|. ...+++|++|+|++|++++.+|. +..+++|+.|++++|.+++..|
T Consensus       461 -----N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          461 -----NKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             -----SCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             -----CccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence                 4554 6665 46789999999999999998888 8999999999999999998877

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=5.8e-47  Score=418.97  Aligned_cols=449  Identities=20%  Similarity=0.200  Sum_probs=345.8

Q ss_pred             CEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEcc
Q 005711          109 EFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFS  188 (681)
Q Consensus       109 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~  188 (681)
                      ++||+++|.++ .+|..+.  ++|++|++++|.+++..|.+|.++++|++|++++| .+.+..|..++++ ++|++|+++
T Consensus         3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l-~~L~~L~Ls   77 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFN-QELEYLDLS   77 (520)
T ss_dssp             CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTC-TTCCEEECC
T ss_pred             ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcc-cCCCEEecC
Confidence            57888888887 4666555  78888888888888776677888888887777777 3445556666666 666666666


Q ss_pred             CCcCccccCccccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChh
Q 005711          189 FNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTC  268 (681)
Q Consensus       189 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~  268 (681)
                      +|.++ .+|..  .+++|++|++++|.+++.                    .+|..++.+++|++|++++|.+++   ..
T Consensus        78 ~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~--------------------~~p~~~~~l~~L~~L~L~~n~l~~---~~  131 (520)
T 2z7x_B           78 HNKLV-KISCH--PTVNLKHLDLSFNAFDAL--------------------PICKEFGNMSQLKFLGLSTTHLEK---SS  131 (520)
T ss_dssp             SSCCC-EEECC--CCCCCSEEECCSSCCSSC--------------------CCCGGGGGCTTCCEEEEEESSCCG---GG
T ss_pred             CCcee-ecCcc--ccCCccEEeccCCccccc--------------------cchhhhccCCcceEEEecCcccch---hh
Confidence            66666 44444  556666666665554421                    456778888888888888888875   35


Q ss_pred             hcccCcc--cEEecCCCcc--ccccCccccCCC-CCcEEeccCCCccCCCChh-hhhcccCCCccEEEccCCC-------
Q 005711          269 IASLQAL--THLNLSHNHL--NYEISPRLVFFE-KLLLLDLSFNDLSGPLPSK-IAQTTEKAGLVLLDLSHNR-------  335 (681)
Q Consensus       269 l~~l~~L--~~L~L~~n~l--~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p~~-~~~~~~~~~L~~L~Ls~n~-------  335 (681)
                      +..+++|  ++|++++|.+  .+..|..+..+. ....+++++|.+.+.++.. +..+.   +|+.+++++|.       
T Consensus       132 ~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~---~L~~L~l~~n~~~~~~~~  208 (520)
T 2z7x_B          132 VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVA---NLELSNIKCVLEDNKCSY  208 (520)
T ss_dssp             GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCS---EEEECCEEECCSTTTTHH
T ss_pred             ccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhccc---ceeeccccccccccccce
Confidence            6667777  8888888888  667777666655 3445678888877766653 33333   79999999987       


Q ss_pred             CcCCCcccccCCCCCCEEeccCCccccccccccC---CCCCCCEEEccCCcCccccCccc-----ccCCCcceeeccccc
Q 005711          336 FSGEIPLKITELKSLQALFLSNNLLIGEIPARIG---NLTYLQVIDLSHNMLSGSIPLNI-----VGCFQLLALIVNNNN  407 (681)
Q Consensus       336 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~L~Ls~n~l~~~~p~~~-----~~~~~L~~L~l~~n~  407 (681)
                      +.+.+| .+..+++|+.|++++|.+++..+..+.   ..++|++|++++|.++|.+|..+     ..+++|+.+++++|.
T Consensus       209 ~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~  287 (520)
T 2z7x_B          209 FLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV  287 (520)
T ss_dssp             HHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECC
T ss_pred             eecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccc
Confidence            666666 788899999999999988765332221   24689999999999999999998     889999999999999


Q ss_pred             ccccCc-cccCCC---CCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcc-
Q 005711          408 LSGEIQ-PELDAL---DSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSG-  482 (681)
Q Consensus       408 l~~~~~-~~~~~l---~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-  482 (681)
                      +  .+| ..+..+   .+|+.|++++|.+.+..  .+..+++|++|++++|++++.+|..+..+++|++|++++|++++ 
T Consensus       288 ~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  363 (520)
T 2z7x_B          288 F--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL  363 (520)
T ss_dssp             C--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBH
T ss_pred             e--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcc
Confidence            8  455 333333   67999999999987432  12689999999999999999899999999999999999999987 


Q ss_pred             -cCCcccccCCccceeecccCccccCCCCCcccccCCccccccCCcc-cccccccceeecCCCcCcccCCC-cCCCCCCC
Q 005711          483 -NLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKG-LFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLR  559 (681)
Q Consensus       483 -~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~-l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~  559 (681)
                       .+|..+..+++|+.|++++|++.+                 .+|.. +..+++|++|++++|++++.+|. +.  ++|+
T Consensus       364 ~~~~~~~~~l~~L~~L~Ls~N~l~~-----------------~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~  424 (520)
T 2z7x_B          364 SKIAEMTTQMKSLQQLDISQNSVSY-----------------DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIK  424 (520)
T ss_dssp             HHHHHHHTTCTTCCEEECCSSCCBC-----------------CGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCC
T ss_pred             ccchHHHhhCCCCCEEECCCCcCCc-----------------ccccchhccCccCCEEECcCCCCCcchhhhhc--ccCC
Confidence             567888999999999988887764                 24443 67789999999999999988876 43  7999


Q ss_pred             EEECCCCcCcccCCccccCCCCCCeEecccCcceeeCCCC--CCCCCccc-cccCCCCCCC
Q 005711          560 ALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWK--QGYQKFPG-AFAGNPNLCL  617 (681)
Q Consensus       560 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~--~~~~~~~~-~~~gn~~lc~  617 (681)
                      .|++++|+++ .+|..+..+++|++|++++|++++ +|..  ..+..+.. .+.+|+..|.
T Consensus       425 ~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~  483 (520)
T 2z7x_B          425 VLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCS  483 (520)
T ss_dssp             EEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             EEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCccc
Confidence            9999999999 889888899999999999999995 5543  22333444 7899998885

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=3.8e-45  Score=414.80  Aligned_cols=503  Identities=22%  Similarity=0.200  Sum_probs=343.1

Q ss_pred             CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeC
Q 005711           82 GHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELIL  161 (681)
Q Consensus        82 ~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  161 (681)
                      ..+++|||++|.+++..+.+|.++++|++|||++|.|++..+.+|+++++|++|+|++|++++..+.+|.++++|++|++
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            46788888888888776778888888888888888888777778888888888888888888766677888888888888


Q ss_pred             CCCCCCCccCCchhccccCCccEEEccCCcCcc-ccCccccCCCCCCEEEccCccCcccccCcCCc-------ccEEECC
Q 005711          162 KGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCG-EIPESLYYLKSLKHLDLEKNNLTGNVHDFYQS-------LLVLNLG  233 (681)
Q Consensus       162 ~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-------L~~L~L~  233 (681)
                      ++| .+.+..+..++++ ++|++|++++|.+++ .+|..++.+++|++|++++|.+++..+..+..       ...++++
T Consensus       132 s~N-~l~~l~~~~~~~L-~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls  209 (635)
T 4g8a_A          132 VET-NLASLENFPIGHL-KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS  209 (635)
T ss_dssp             TTS-CCCCSTTCCCTTC-TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred             CCC-cCCCCChhhhhcC-cccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcc
Confidence            888 4455555567777 788888888888865 46777888888888888888888777665543       3467788


Q ss_pred             CCCCccccchhhccCCCCCEEEccCCccccC-CChhhcccCcccEEecCCCcc------ccccCccccCCCCCcEEeccC
Q 005711          234 SNRFSGTLPCFAASAMSLTVLKLDNNSVVGG-IPTCIASLQALTHLNLSHNHL------NYEISPRLVFFEKLLLLDLSF  306 (681)
Q Consensus       234 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l------~~~~~~~l~~l~~L~~L~L~~  306 (681)
                      .|.++...+. ......++.+++.+|..... .+..+..+..++...+..+..      .......+.....+...++..
T Consensus       210 ~n~l~~i~~~-~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~  288 (635)
T 4g8a_A          210 LNPMNFIQPG-AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL  288 (635)
T ss_dssp             TCCCCEECTT-TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEE
T ss_pred             cCcccccCcc-cccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhh
Confidence            8877644333 33344566777777654422 233445555555554432221      111222233334444444433


Q ss_pred             CCccCC---CChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCc
Q 005711          307 NDLSGP---LPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNM  383 (681)
Q Consensus       307 n~l~~~---~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~  383 (681)
                      +.....   .+..+...   .+++.+++.++.+.+..  .+.....++.|++.+|.+.+..+   ..++.|+.+++..|.
T Consensus       289 ~~~~~~~~~~~~~~~~~---~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~  360 (635)
T 4g8a_A          289 AYLDYYLDGIIDLFNCL---TNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNK  360 (635)
T ss_dssp             ECCCSCEEECTTTTGGG---TTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCC
T ss_pred             hhhcccccchhhhhhhh---ccccccccccccccccc--ccccchhhhhhhcccccccCcCc---ccchhhhhccccccc
Confidence            322211   11122222   25666666666665332  24445667777777776654432   234566677777666


Q ss_pred             CccccCcccccCCCcceeecccccccc--cCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcch
Q 005711          384 LSGSIPLNIVGCFQLLALIVNNNNLSG--EIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLN  461 (681)
Q Consensus       384 l~~~~p~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~  461 (681)
                      .....  ....+++|+.+++++|.+..  ..+..+..+.+|+.+++..|.... .+..+..+++|+.++++.|+.....+
T Consensus       361 ~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~  437 (635)
T 4g8a_A          361 GGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSE  437 (635)
T ss_dssp             SCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTS
T ss_pred             CCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccc
Confidence            54322  23456677777777776643  334444556677777777776653 34456667777777777666554333


Q ss_pred             -hhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCcccc-C-------CCCCcccccCCccccccCCcccccc
Q 005711          462 -DAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMG-F-------IPDAVGMDLSDNLLHGTIPKGLFQL  532 (681)
Q Consensus       462 -~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~-~-------~p~~~~L~Ls~N~l~g~ip~~l~~l  532 (681)
                       ..+..+++++.++++.|.+.+..+..+..++.++.|++++|++.. .       .+..+.|||++|++++..|..|.++
T Consensus       438 ~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l  517 (635)
T 4g8a_A          438 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL  517 (635)
T ss_dssp             SCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             ccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCC
Confidence             345666777777777777776666667777777777777775332 1       2334567788888887889999999


Q ss_pred             cccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCC-CCCCeEecccCcceeeCCC
Q 005711          533 QGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSL-QELTLLNLSYNSFSGFVPW  598 (681)
Q Consensus       533 ~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~~~~p~  598 (681)
                      ++|++|+|++|++++.+|. +.++++|+.|||++|++++..|+.+..+ ++|++|++++|++.|.|..
T Consensus       518 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~  585 (635)
T 4g8a_A          518 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH  585 (635)
T ss_dssp             TTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred             CCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence            9999999999999988887 8899999999999999999999999988 6899999999999998863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=5.4e-46  Score=425.89  Aligned_cols=452  Identities=19%  Similarity=0.224  Sum_probs=347.0

Q ss_pred             CCCCEEECCCCcCCccccccccCCCCCCEEEc-cCCCCCCcCCccccCC-CCCC-----Ee---------eCCCCCCCCc
Q 005711          106 SFLEFLVLSSNAFTGRISTCFGGLSGLKTLDL-SYNKFVGVVPDAIMKL-RNLR-----EL---------ILKGNPELGG  169 (681)
Q Consensus       106 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L-s~n~l~~~~p~~~~~l-~~L~-----~L---------~L~~n~~~~~  169 (681)
                      .+++.|+|+++.+.|.+|+.|++|++|++|+| ++|.++|..|..-... ..+.     .+         .......+..
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            57899999999999999999999999999999 8998887755322111 0000     00         0000000000


Q ss_pred             -----------cCCchhccccCCccEEEccC--CcCccccCccccCCCCCCEEEccCccCccc-ccCcCCcccEEECCCC
Q 005711          170 -----------VFPGWVGNFSMNLEKLDFSF--NSFCGEIPESLYYLKSLKHLDLEKNNLTGN-VHDFYQSLLVLNLGSN  235 (681)
Q Consensus       170 -----------~~p~~l~~l~~~L~~L~L~~--n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~L~~L~L~~n  235 (681)
                                 ..+...... ..++.+.+..  |.+++ +|..++++++|++|++++|.+++. ++..+..     .+.|
T Consensus       403 l~~~~l~~~~~~~~i~~~~~-l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~-----~s~n  475 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSR-ISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWED-----ANSD  475 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCC-CCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSC-----TTSH
T ss_pred             HHHHHhhhCccccccccccc-cchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccc-----cccc
Confidence                       001111111 2344444444  78887 899999999999999999999872 2222111     1224


Q ss_pred             CCccccchhhc--cCCCCCEEEccCCccccCCChhhcccCcccEEecCCCc-ccc-ccCccccCCC-------CCcEEec
Q 005711          236 RFSGTLPCFAA--SAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNH-LNY-EISPRLVFFE-------KLLLLDL  304 (681)
Q Consensus       236 ~l~~~~~~~~~--~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~~~~l~~l~-------~L~~L~L  304 (681)
                      .++|.+|..++  ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..++.++       +|+.|++
T Consensus       476 ~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~L  555 (876)
T 4ecn_A          476 YAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM  555 (876)
T ss_dssp             HHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEEC
T ss_pred             cccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEe
Confidence            45567888877  99999999999999999999999999999999999998 888 7887666555       9999999


Q ss_pred             cCCCccCCCCh--hhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCC-CCEEEccC
Q 005711          305 SFNDLSGPLPS--KIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTY-LQVIDLSH  381 (681)
Q Consensus       305 ~~n~l~~~~p~--~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~Ls~  381 (681)
                      ++|.++ .+|.  .+..+.   +|+.|++++|.++ .+| .+..+++|+.|++++|.++ .+|..+.++++ |+.|++++
T Consensus       556 s~N~L~-~ip~~~~l~~L~---~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~  628 (876)
T 4ecn_A          556 GYNNLE-EFPASASLQKMV---KLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSH  628 (876)
T ss_dssp             CSSCCC-BCCCHHHHTTCT---TCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCS
T ss_pred             eCCcCC-ccCChhhhhcCC---CCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcC
Confidence            999998 7887  777766   8999999999998 788 8888999999999999988 78888888888 99999999


Q ss_pred             CcCccccCcccccCCC--cceeecccccccccCcccc---C--CCCCccEEEcccCcceeccccc-cCCCCCCcEEECCC
Q 005711          382 NMLSGSIPLNIVGCFQ--LLALIVNNNNLSGEIQPEL---D--ALDSLKILDISNNQISGEIPLT-LAGLKSLEIVDFSS  453 (681)
Q Consensus       382 n~l~~~~p~~~~~~~~--L~~L~l~~n~l~~~~~~~~---~--~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~  453 (681)
                      |.++ .+|..+.....  |+.|++++|.+.+.+|...   .  .+++|+.|++++|.++ .+|.. +..+++|+.|++++
T Consensus       629 N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~  706 (876)
T 4ecn_A          629 NKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSN  706 (876)
T ss_dssp             SCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCS
T ss_pred             CCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCC
Confidence            9988 78877766544  8999999999888665322   2  3458889999999888 45544 44788899999999


Q ss_pred             CcCCCcchhhhhc--------CCCCCEEEccCCcCcccCCcccc--cCCccceeecccCccccCCCCCcccccCCccccc
Q 005711          454 NNLSGSLNDAITK--------WTNLKYFSIARNKLSGNLPNWLF--SFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHG  523 (681)
Q Consensus       454 n~l~~~~~~~~~~--------l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g  523 (681)
                      |+++ .+|..+..        +++|++|+|++|+++ .+|..+.  .+++|+.|++++|+++                  
T Consensus       707 N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~------------------  766 (876)
T 4ecn_A          707 NLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS------------------  766 (876)
T ss_dssp             CCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCS------------------
T ss_pred             CcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCC------------------
Confidence            9888 55554432        238889999998888 6777776  7777777777766654                  


Q ss_pred             cCCcccccccccceeecCC------CcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccCcceeeC
Q 005711          524 TIPKGLFQLQGLEYLNLSF------NFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFV  596 (681)
Q Consensus       524 ~ip~~l~~l~~L~~L~Ls~------N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~  596 (681)
                      .+|..++.+++|+.|+|++      |++.+.+|. +.++++|+.|+|++|++ +.+|..+.  ++|+.||+++|++...-
T Consensus       767 ~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~  843 (876)
T 4ecn_A          767 SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISID  843 (876)
T ss_dssp             SCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEE
T ss_pred             ccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccC
Confidence            3678888999999999976      888889998 99999999999999999 78998876  69999999999987653

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3e-45  Score=408.74  Aligned_cols=458  Identities=18%  Similarity=0.171  Sum_probs=323.8

Q ss_pred             EEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCC
Q 005711           85 VSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN  164 (681)
Q Consensus        85 ~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n  164 (681)
                      +.++++++++++ +|..+.  ++|++|++++|.+++..|..|+++++|++|+|++|++++..|.+|.++++|++|++++|
T Consensus        34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  110 (562)
T 3a79_B           34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN  110 (562)
T ss_dssp             CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred             cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence            678999999986 776665  89999999999999988899999999999999999999888999999999999999999


Q ss_pred             CCCCccCCchhccccCCccEEEccCCcCcc-ccCccccCCCCCCEEEccCccCcccccCcCCcc--cEEECCCCCC--cc
Q 005711          165 PELGGVFPGWVGNFSMNLEKLDFSFNSFCG-EIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSL--LVLNLGSNRF--SG  239 (681)
Q Consensus       165 ~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L--~~L~L~~n~l--~~  239 (681)
                      ++ . .+|..  .+ ++|++|++++|.+++ .+|..++++++|++|++++|.+++.....+.+|  ++|++++|.+  ++
T Consensus       111 ~l-~-~lp~~--~l-~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~  185 (562)
T 3a79_B          111 RL-Q-NISCC--PM-ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKG  185 (562)
T ss_dssp             CC-C-EECSC--CC-TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCS
T ss_pred             cC-C-ccCcc--cc-ccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccc
Confidence            64 3 56665  66 899999999999986 457899999999999999999876444444444  6666666666  55


Q ss_pred             ccchhhccCC-CCCEEEccCCccccCCCh-hhcccCcccEEecCCCc-----cccccCccccCCCCCcEEeccCCCccCC
Q 005711          240 TLPCFAASAM-SLTVLKLDNNSVVGGIPT-CIASLQALTHLNLSHNH-----LNYEISPRLVFFEKLLLLDLSFNDLSGP  312 (681)
Q Consensus       240 ~~~~~~~~~~-~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~-----l~~~~~~~l~~l~~L~~L~L~~n~l~~~  312 (681)
                      ..|..+..+. ..-.+++++|.+.+.++. .+..+++|+.+++++|.     +.+ ....+..+++|+.+++.++.+.+.
T Consensus       186 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~-~~~~l~~l~~L~~L~L~~~~l~~~  264 (562)
T 3a79_B          186 GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT-FLSELTRGPTLLNVTLQHIETTWK  264 (562)
T ss_dssp             SSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHH-HHHHHHSCSSCEEEEEEEEEECHH
T ss_pred             cCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHH-HHHHHhccCcceEEEecCCcCcHH
Confidence            5555555443 111345555555543332 23345555555555543     111 112233444444444444433321


Q ss_pred             CChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCcccccccccc-----CCCCCCCEEEccCCcCccc
Q 005711          313 LPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARI-----GNLTYLQVIDLSHNMLSGS  387 (681)
Q Consensus       313 ~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~l~~~  387 (681)
                      ....                       ++..+ ..++|++|++++|.++|.+|..+     .+++.|+.++++.+.+  .
T Consensus       265 ~~~~-----------------------~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~  318 (562)
T 3a79_B          265 CSVK-----------------------LFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--L  318 (562)
T ss_dssp             HHHH-----------------------HHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--S
T ss_pred             HHHH-----------------------HHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--e
Confidence            1111                       11111 12356666666666655555554     4455555555555554  2


Q ss_pred             cCc-ccc---cCCCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCC--cch
Q 005711          388 IPL-NIV---GCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSG--SLN  461 (681)
Q Consensus       388 ~p~-~~~---~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~  461 (681)
                      +|. .+.   ...+++.|++++|.+.....  ...+++|++|++++|.+++.+|..+.++++|++|++++|++++  .+|
T Consensus       319 ~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  396 (562)
T 3a79_B          319 FSKEALYSVFAEMNIKMLSISDTPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVA  396 (562)
T ss_dssp             SCHHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHH
T ss_pred             cChhhhhhhhccCcceEEEccCCCcccccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccch
Confidence            331 111   22456777777776643221  2567889999999999988888888899999999999999886  446


Q ss_pred             hhhhcCCCCCEEEccCCcCcccCCc-ccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeec
Q 005711          462 DAITKWTNLKYFSIARNKLSGNLPN-WLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNL  540 (681)
Q Consensus       462 ~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~L  540 (681)
                      ..+..+++|++|++++|++++.+|. .+..+++|+.|++++|++++                 .+|..+.  ++|++|+|
T Consensus       397 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-----------------~~~~~l~--~~L~~L~L  457 (562)
T 3a79_B          397 LMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG-----------------SVFRCLP--PKVKVLDL  457 (562)
T ss_dssp             HTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCG-----------------GGGSSCC--TTCSEEEC
T ss_pred             hhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCc-----------------chhhhhc--CcCCEEEC
Confidence            6788899999999999999875665 46677778877777776654                 4454443  68999999


Q ss_pred             CCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCcc-ccCCCCCCeEecccCcceeeCCCCC
Q 005711          541 SFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGN-ISSLQELTLLNLSYNSFSGFVPWKQ  600 (681)
Q Consensus       541 s~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~~~~p~~~  600 (681)
                      ++|+++ .+|. ++.+++|+.|++++|+++ .+|.. +..+++|+.|++++|++.|.+|..+
T Consensus       458 ~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~  517 (562)
T 3a79_B          458 HNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPGIR  517 (562)
T ss_dssp             CSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHHHH
T ss_pred             CCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcchHH
Confidence            999999 5666 779999999999999999 56665 8999999999999999999887543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=7e-41  Score=379.73  Aligned_cols=505  Identities=20%  Similarity=0.168  Sum_probs=394.8

Q ss_pred             cccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhc
Q 005711           97 QVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVG  176 (681)
Q Consensus        97 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~  176 (681)
                      .+|..+.  +.+++|||++|.|++..+.+|+++++|++|||++|++++..|.+|.++++|++|+|++|+ +.+..+..+.
T Consensus        45 ~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~  121 (635)
T 4g8a_A           45 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFS  121 (635)
T ss_dssp             SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGT
T ss_pred             ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhc
Confidence            4565553  479999999999998888899999999999999999998888899999999999999994 5565667788


Q ss_pred             cccCCccEEEccCCcCccccCccccCCCCCCEEEccCccCccc-ccCc---CCcccEEECCCCCCccccchhhccCCC--
Q 005711          177 NFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGN-VHDF---YQSLLVLNLGSNRFSGTLPCFAASAMS--  250 (681)
Q Consensus       177 ~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~~~~---~~~L~~L~L~~n~l~~~~~~~~~~~~~--  250 (681)
                      ++ ++|++|++++|.+++..+..|+++++|++|++++|.+++. .|..   +.+|++|++++|++++..+..+..+.+  
T Consensus       122 ~L-~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~  200 (635)
T 4g8a_A          122 GL-SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP  200 (635)
T ss_dssp             TC-TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred             CC-CCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhh
Confidence            88 8999999999999977777899999999999999999764 3443   456999999999999888877766544  


Q ss_pred             --CCEEEccCCccccCCChhhcccCcccEEecCCCcccccc-CccccCCCCCcEEeccCCCc------cCCCChhhhhcc
Q 005711          251 --LTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEI-SPRLVFFEKLLLLDLSFNDL------SGPLPSKIAQTT  321 (681)
Q Consensus       251 --L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l------~~~~p~~~~~~~  321 (681)
                        ...++++.|.+....+..+ ....++.+++.+|...... +..+..+..++...+..+..      ....+..+....
T Consensus       201 ~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~  279 (635)
T 4g8a_A          201 LLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC  279 (635)
T ss_dssp             TCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGG
T ss_pred             hhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccccccc
Confidence              3478899998886544443 4446778888887655332 33456677777666543322      222222233332


Q ss_pred             cCCCccEEEccCCCCcC---CCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCc
Q 005711          322 EKAGLVLLDLSHNRFSG---EIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQL  398 (681)
Q Consensus       322 ~~~~L~~L~Ls~n~l~~---~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L  398 (681)
                         .+...++..+....   ..+..+....+++.+.+.++.+....  .+.....|+.|++.+|.+.+..+.   .+..+
T Consensus       280 ---~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L  351 (635)
T 4g8a_A          280 ---NLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTL---KLKSL  351 (635)
T ss_dssp             ---GSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCCC---BCTTC
T ss_pred             ---chhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCcc---cchhh
Confidence               45555555443332   23344556788999999999876543  356678899999999988754443   45678


Q ss_pred             ceeecccccccccCccccCCCCCccEEEcccCccee--ccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEcc
Q 005711          399 LALIVNNNNLSGEIQPELDALDSLKILDISNNQISG--EIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIA  476 (681)
Q Consensus       399 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  476 (681)
                      +.+.+..|......  ....+++|+.++++.|.+..  ..+..+..+.+|+.+++..|.... .+..+..+++|+.++++
T Consensus       352 ~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~  428 (635)
T 4g8a_A          352 KRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQ  428 (635)
T ss_dssp             CEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECT
T ss_pred             hhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhh
Confidence            89999988876543  34578999999999998864  456667788999999999998874 45567889999999999


Q ss_pred             CCcCcccCC-cccccCCccceeecccCccccCCC-------CCcccccCCccc-cccCCcccccccccceeecCCCcCcc
Q 005711          477 RNKLSGNLP-NWLFSFQAIQMMDFSTNKFMGFIP-------DAVGMDLSDNLL-HGTIPKGLFQLQGLEYLNLSFNFLDG  547 (681)
Q Consensus       477 ~n~l~~~~p-~~~~~l~~L~~L~ls~n~~~~~~p-------~~~~L~Ls~N~l-~g~ip~~l~~l~~L~~L~Ls~N~l~~  547 (681)
                      .+......+ ..+..+.+++.++++.|.+.+..|       ....|++++|++ .+.+|..+..+++|++|+|++|++++
T Consensus       429 ~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~  508 (635)
T 4g8a_A          429 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ  508 (635)
T ss_dssp             TSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred             hccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCC
Confidence            988776554 456789999999999999877654       346799999985 45678899999999999999999999


Q ss_pred             cCCC-cCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccCcceeeCCCCCC-C-CCccc-cccCCCCCCC
Q 005711          548 QVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQG-Y-QKFPG-AFAGNPNLCL  617 (681)
Q Consensus       548 ~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~-~-~~~~~-~~~gn~~lc~  617 (681)
                      .+|. +.++++|++|+|++|++++..|..|..+++|++||+++|++++..|.... + .++.. .+.|||..|.
T Consensus       509 l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~  582 (635)
T 4g8a_A          509 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  582 (635)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred             cChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence            8888 99999999999999999999999999999999999999999998875432 2 23444 7899999995

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1e-42  Score=375.53  Aligned_cols=400  Identities=23%  Similarity=0.284  Sum_probs=189.2

Q ss_pred             ccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCC
Q 005711          102 LCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMN  181 (681)
Q Consensus       102 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~  181 (681)
                      -.+.++|++|++++|.+ +.+|.+++++++|++|++++|.+.|.+|.+++++++|+++++..|..             .+
T Consensus         7 ~~~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-------------~~   72 (454)
T 1jl5_A            7 NVSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-------------RQ   72 (454)
T ss_dssp             ----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-------------HT
T ss_pred             ccccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-------------cC
Confidence            33567899999999999 78999999999999999999999999999999998886666655511             45


Q ss_pred             ccEEEccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCcc
Q 005711          182 LEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSV  261 (681)
Q Consensus       182 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l  261 (681)
                      +++|++++|.+++ +|..   .++|++|++++|.+++ +|..+.+|++|++++|++++ ++..   .++|++|++++|++
T Consensus        73 l~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l  143 (454)
T 1jl5_A           73 AHELELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQL  143 (454)
T ss_dssp             CSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCC
T ss_pred             CCEEEecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCC
Confidence            6667777766663 3331   2566666666666665 44445556666666666653 2211   14566666666666


Q ss_pred             ccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCc
Q 005711          262 VGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIP  341 (681)
Q Consensus       262 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p  341 (681)
                      ++ +| .++.+++|++|++++|++++ +|..+   ++|++|++++|.+++ +| .+..+.   +|+.|++++|++++ +|
T Consensus       144 ~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~---~L~~L~l~~N~l~~-l~  211 (454)
T 1jl5_A          144 EK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLP---FLTAIYADNNSLKK-LP  211 (454)
T ss_dssp             SS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCT---TCCEEECCSSCCSS-CC
T ss_pred             CC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCC---CCCEEECCCCcCCc-CC
Confidence            54 44 35666666666666666553 33322   356666666666554 33 233333   56666666666553 33


Q ss_pred             ccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCC
Q 005711          342 LKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDS  421 (681)
Q Consensus       342 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  421 (681)
                      ..   .++|++|++++|.++ .+|. ++.+++|++|++++|++++ +|..   .++|+.|++++|.+.+ +|..   .++
T Consensus       212 ~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~  278 (454)
T 1jl5_A          212 DL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQS  278 (454)
T ss_dssp             CC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTT
T ss_pred             CC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCc
Confidence            22   135666666666555 3442 5556666666666665553 3321   2455555555555554 2221   245


Q ss_pred             ccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcC-CCCCEEEccCCcCcccCCcccccCCccceeecc
Q 005711          422 LKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKW-TNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFS  500 (681)
Q Consensus       422 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls  500 (681)
                      |+.|++++|.+++. |..   .++|++|++++|++++ ++    .+ ++|++|++++|++++ +|..   +++|+.|+++
T Consensus       279 L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~  345 (454)
T 1jl5_A          279 LTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIAS  345 (454)
T ss_dssp             CCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECC
T ss_pred             CCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECC
Confidence            55555555555541 110   1455555555555553 11    12 355555555555553 3332   2444444444


Q ss_pred             cCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcc--cCCC-cCCCCCCCEEECCCCcCcccCCcccc
Q 005711          501 TNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDG--QVPG-LYRLRSLRALDLSHNSLTGQIPGNIS  577 (681)
Q Consensus       501 ~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~--~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~  577 (681)
                      +|+++                  .+|.   .+++|++|++++|++++  .+|. +..        ++.|.+.|.+|..  
T Consensus       346 ~N~l~------------------~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~--  394 (454)
T 1jl5_A          346 FNHLA------------------EVPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL--  394 (454)
T ss_dssp             SSCCS------------------CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC----------
T ss_pred             CCccc------------------cccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc--
Confidence            44433                  3343   24566666666666665  3443 221        2234455555542  


Q ss_pred             CCCCCCeEecccCccee
Q 005711          578 SLQELTLLNLSYNSFSG  594 (681)
Q Consensus       578 ~l~~L~~L~ls~N~l~~  594 (681)
                       +++|++|++++|++++
T Consensus       395 -~~~L~~L~ls~N~l~~  410 (454)
T 1jl5_A          395 -PQNLKQLHVETNPLRE  410 (454)
T ss_dssp             -----------------
T ss_pred             -cCcCCEEECCCCcCCc
Confidence             2556666666666665

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=8.1e-42  Score=380.99  Aligned_cols=437  Identities=20%  Similarity=0.214  Sum_probs=310.3

Q ss_pred             CCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEee
Q 005711           81 TGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELI  160 (681)
Q Consensus        81 ~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  160 (681)
                      ..+++.|++++|.+.+..+..+.++++|++|+|++|.+++..|..|+++++|++|||++|+++ .+|..  .+++|++|+
T Consensus        51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~  127 (562)
T 3a79_B           51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD  127 (562)
T ss_dssp             CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred             CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence            368999999999999888889999999999999999999999999999999999999999999 67766  899999999


Q ss_pred             CCCCCCCCccCCchhccccCCccEEEccCCcCccccCccccCCCCC--CEEEccCccC--cccccCcCCccc----EEEC
Q 005711          161 LKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSL--KHLDLEKNNL--TGNVHDFYQSLL----VLNL  232 (681)
Q Consensus       161 L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L--~~L~L~~n~l--~~~~~~~~~~L~----~L~L  232 (681)
                      +++|++....+|..++++ ++|++|++++|.+++.   .+..+++|  ++|++++|.+  ++..+..+..++    .+++
T Consensus       128 Ls~N~l~~l~~p~~~~~l-~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l  203 (562)
T 3a79_B          128 LSFNDFDVLPVCKEFGNL-TKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF  203 (562)
T ss_dssp             CCSSCCSBCCCCGGGGGC-TTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEE
T ss_pred             CCCCCccccCchHhhccc-CcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEe
Confidence            999966554678899999 8999999999999863   34555555  9999999999  888888776644    6688


Q ss_pred             CCCCCccccch-hhccCCCCCEEEccCCc-----cccCCChhhcccCcccEEecCCCccccccCcc---ccCCCCCcEEe
Q 005711          233 GSNRFSGTLPC-FAASAMSLTVLKLDNNS-----VVGGIPTCIASLQALTHLNLSHNHLNYEISPR---LVFFEKLLLLD  303 (681)
Q Consensus       233 ~~n~l~~~~~~-~~~~~~~L~~L~L~~n~-----l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~---l~~l~~L~~L~  303 (681)
                      ++|.+.+.++. .+..+++|+.+++++|+     +.+ ....+..+++|+.+++.++.+.+.....   ....++|++|+
T Consensus       204 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~-~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~  282 (562)
T 3a79_B          204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT-FLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLN  282 (562)
T ss_dssp             CSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHH-HHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEE
T ss_pred             cCccchhhhhhhcccccceEEEecccccccccchHHH-HHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEE
Confidence            89988876654 45678899999999985     222 2345778899999999887766432111   11234777777


Q ss_pred             ccCCCccCCCChhhhhc--ccCCCccEEEccCCCCcCCCc-ccccC---CCCCCEEeccCCccccccccccCCCCCCCEE
Q 005711          304 LSFNDLSGPLPSKIAQT--TEKAGLVLLDLSHNRFSGEIP-LKITE---LKSLQALFLSNNLLIGEIPARIGNLTYLQVI  377 (681)
Q Consensus       304 L~~n~l~~~~p~~~~~~--~~~~~L~~L~Ls~n~l~~~~p-~~l~~---l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  377 (681)
                      +++|.++|.+|..+...  ..++.|+.++++.+.+  .+| ..+..   ..+|++|++++|.+....  ....+++|++|
T Consensus       283 l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L  358 (562)
T 3a79_B          283 IYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFL  358 (562)
T ss_dssp             EEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEE
T ss_pred             EeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEE
Confidence            77777777777655211  2122444555555544  233 11111   134566666665543221  11344555555


Q ss_pred             EccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCccee--ccccccCCCCCCcEEECCCCc
Q 005711          378 DLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISG--EIPLTLAGLKSLEIVDFSSNN  455 (681)
Q Consensus       378 ~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~L~~n~  455 (681)
                      ++++|.+++                        .+|..+..+++|+.|++++|++++  .+|..+.++++|++|++++|+
T Consensus       359 ~l~~n~l~~------------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~  414 (562)
T 3a79_B          359 NFTQNVFTD------------------------SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS  414 (562)
T ss_dssp             ECCSSCCCT------------------------TTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC
T ss_pred             ECCCCcccc------------------------chhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc
Confidence            555555554                        444445556666666666666664  234556666777777777777


Q ss_pred             CCCcchh-hhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccc
Q 005711          456 LSGSLND-AITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQG  534 (681)
Q Consensus       456 l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~  534 (681)
                      +++.+|. .+..+++|++|++++|++++.+|..+.  ++|+.|++++|+++                  .+|..++.+++
T Consensus       415 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~------------------~ip~~~~~l~~  474 (562)
T 3a79_B          415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM------------------SIPKDVTHLQA  474 (562)
T ss_dssp             CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC------------------CCCTTTTSSCC
T ss_pred             CCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc------------------ccChhhcCCCC
Confidence            7663443 356667777777777777665554432  45666665555544                  67777788999


Q ss_pred             cceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCC
Q 005711          535 LEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIP  573 (681)
Q Consensus       535 L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p  573 (681)
                      |++|+|++|++++..+. +..+++|+.|++++|.+++..|
T Consensus       475 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          475 LQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             CSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             CCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            99999999999954444 8889999999999999997665

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.1e-41  Score=367.41  Aligned_cols=421  Identities=24%  Similarity=0.255  Sum_probs=255.5

Q ss_pred             CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeC
Q 005711           82 GHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELIL  161 (681)
Q Consensus        82 ~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  161 (681)
                      .++++|+++++.+ |.+|++++++++|++|++++|.+.|.+|..++++++|++++++.|..           .++++|++
T Consensus        11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~l   78 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELEL   78 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEEC
T ss_pred             ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEEe
Confidence            5788999999999 89999999999999999999999999999999999874444443321           33445555


Q ss_pred             CCCCCCCccCCchhccccCCccEEEccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCcccc
Q 005711          162 KGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTL  241 (681)
Q Consensus       162 ~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~  241 (681)
                      ++|.+ ++ +|..    .++|++|++++|.+++ +|..   .++|++|++++|.+++. +....+|++|++++|++++ +
T Consensus        79 ~~~~l-~~-lp~~----~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~~~~L~~L~L~~n~l~~-l  146 (454)
T 1jl5_A           79 NNLGL-SS-LPEL----PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDLPPLLEYLGVSNNQLEK-L  146 (454)
T ss_dssp             TTSCC-SC-CCSC----CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSCCTTCCEEECCSSCCSS-C
T ss_pred             cCCcc-cc-CCCC----cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCCCCCCCEEECcCCCCCC-C
Confidence            55422 11 2221    1456666666666654 4432   25666666666666652 2223567777777777775 6


Q ss_pred             chhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcc
Q 005711          242 PCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTT  321 (681)
Q Consensus       242 ~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~  321 (681)
                      | .++.+++|++|++++|++++ +|..+   .+|++|++++|.+++ +| .+..+++|+.|++++|.+++ +|...    
T Consensus       147 p-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~----  214 (454)
T 1jl5_A          147 P-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP----  214 (454)
T ss_dssp             C-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC----
T ss_pred             c-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc----
Confidence            6 58888999999999998885 55543   589999999999886 55 68889999999999999885 44322    


Q ss_pred             cCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCccee
Q 005711          322 EKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLAL  401 (681)
Q Consensus       322 ~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L  401 (681)
                        ++|+.|++++|.++ .+| .++.+++|++|++++|++++ +|..   .++|++|++++|.+++ +|..   .++|+.|
T Consensus       215 --~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L  282 (454)
T 1jl5_A          215 --LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFL  282 (454)
T ss_dssp             --TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEE
T ss_pred             --CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEE
Confidence              27999999999998 677 48889999999999999885 4442   4789999999999986 5543   3789999


Q ss_pred             ecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCc
Q 005711          402 IVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLS  481 (681)
Q Consensus       402 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  481 (681)
                      ++++|.+++.. .   ..++|+.|++++|.+++. +.   ..++|++|++++|++++ +|..   +++|++|++++|+++
T Consensus       283 ~ls~N~l~~l~-~---~~~~L~~L~l~~N~l~~i-~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~  350 (454)
T 1jl5_A          283 DVSENIFSGLS-E---LPPNLYYLNASSNEIRSL-CD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA  350 (454)
T ss_dssp             ECCSSCCSEES-C---CCTTCCEEECCSSCCSEE-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred             ECcCCccCccc-C---cCCcCCEEECcCCcCCcc-cC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc
Confidence            99999988731 1   126899999999999862 21   12589999999999986 5543   589999999999998


Q ss_pred             ccCCcccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCCcCCCCCCCEE
Q 005711          482 GNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRAL  561 (681)
Q Consensus       482 ~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L  561 (681)
                       .+|.   .+++|+.|++++|++++. |              .+|..+..        ++.|.+.|.+|..  +++|+.|
T Consensus       351 -~lp~---~l~~L~~L~L~~N~l~~l-~--------------~ip~~l~~--------L~~n~~~~~i~~~--~~~L~~L  401 (454)
T 1jl5_A          351 -EVPE---LPQNLKQLHVEYNPLREF-P--------------DIPESVED--------LRMNSHLAEVPEL--PQNLKQL  401 (454)
T ss_dssp             -CCCC---CCTTCCEEECCSSCCSSC-C--------------CCCTTCCE--------EECCC-----------------
T ss_pred             -cccc---hhhhccEEECCCCCCCcC-C--------------CChHHHHh--------hhhcccccccccc--cCcCCEE
Confidence             4666   467888888888877651 1              34444432        2345666666652  4678888


Q ss_pred             ECCCCcCcc--cCCccccCCCCCCeEecccCcceeeCC
Q 005711          562 DLSHNSLTG--QIPGNISSLQELTLLNLSYNSFSGFVP  597 (681)
Q Consensus       562 ~Ls~N~l~~--~~p~~l~~l~~L~~L~ls~N~l~~~~p  597 (681)
                      |+++|++++  .+|.+      ++.|.+.+|.+.+.+|
T Consensus       402 ~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~~~~  433 (454)
T 1jl5_A          402 HVETNPLREFPDIPES------VEDLRMNSERVVDPYE  433 (454)
T ss_dssp             --------------------------------------
T ss_pred             ECCCCcCCccccchhh------HhheeCcCcccCCccc
Confidence            888888876  55543      4556677888777765

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=8e-41  Score=343.74  Aligned_cols=291  Identities=31%  Similarity=0.504  Sum_probs=209.2

Q ss_pred             CCHHhHHHHHHHHhcCCCCCCCCCCC-CCCCCCC--CCceeecCCC--CcEEEEEcCCCCCcc--cccccccCCCCCCEE
Q 005711           39 LNLEDKASLLLFKSLVQDPTQKLSSW-VGSNCTN--WTGVACNFQT--GHVVSINLTDTSLSG--QVHPRLCKLSFLEFL  111 (681)
Q Consensus        39 ~~~~~~~~l~~~~~~~~~~~~~~~~w-~~~~cc~--w~gv~c~~~~--~~v~~L~L~~~~l~g--~~~~~l~~l~~L~~L  111 (681)
                      +..+|++||++||+++.+|. .+++| .+.+||.  |.||.|+...  ++|++|+|+++.+.|  .+|..+.++++|++|
T Consensus         3 c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L   81 (313)
T 1ogq_A            3 CNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFL   81 (313)
T ss_dssp             SCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEE
T ss_pred             CCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCee
Confidence            34567779999999998875 78899 4678998  9999998544  899999999999999  899999999999999


Q ss_pred             ECCC-CcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCC
Q 005711          112 VLSS-NAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFN  190 (681)
Q Consensus       112 ~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n  190 (681)
                      ++++ |.+.+.+|..|+++++|++|++++|++++.+|..|.++++|++|++++| .+.+.+|..+..+ ++|++|++++|
T Consensus        82 ~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l-~~L~~L~L~~N  159 (313)
T 1ogq_A           82 YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN-ALSGTLPPSISSL-PNLVGITFDGN  159 (313)
T ss_dssp             EEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSS-EEESCCCGGGGGC-TTCCEEECCSS
T ss_pred             eCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCC-ccCCcCChHHhcC-CCCCeEECcCC
Confidence            9995 8999999999999999999999999999899999999999999999888 4566777777777 78888888888


Q ss_pred             cCccccCccccCCC-CCCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChhh
Q 005711          191 SFCGEIPESLYYLK-SLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCI  269 (681)
Q Consensus       191 ~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l  269 (681)
                      .+++.+|..+..++ +|++|++++|.+++                     .+|..+..++ |++|++++|.+++..|..+
T Consensus       160 ~l~~~~p~~l~~l~~~L~~L~L~~N~l~~---------------------~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~  217 (313)
T 1ogq_A          160 RISGAIPDSYGSFSKLFTSMTISRNRLTG---------------------KIPPTFANLN-LAFVDLSRNMLEGDASVLF  217 (313)
T ss_dssp             CCEEECCGGGGCCCTTCCEEECCSSEEEE---------------------ECCGGGGGCC-CSEEECCSSEEEECCGGGC
T ss_pred             cccCcCCHHHhhhhhcCcEEECcCCeeec---------------------cCChHHhCCc-ccEEECcCCcccCcCCHHH
Confidence            88777777777776 67776666655543                     3444444444 6666666666665555556


Q ss_pred             cccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCC
Q 005711          270 ASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKS  349 (681)
Q Consensus       270 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~  349 (681)
                      ..+++|++|++++|.+++.++. +..+++                           |++|++++|++++.+|..+..+++
T Consensus       218 ~~l~~L~~L~L~~N~l~~~~~~-~~~l~~---------------------------L~~L~Ls~N~l~~~~p~~l~~l~~  269 (313)
T 1ogq_A          218 GSDKNTQKIHLAKNSLAFDLGK-VGLSKN---------------------------LNGLDLRNNRIYGTLPQGLTQLKF  269 (313)
T ss_dssp             CTTSCCSEEECCSSEECCBGGG-CCCCTT---------------------------CCEEECCSSCCEECCCGGGGGCTT
T ss_pred             hcCCCCCEEECCCCceeeecCc-ccccCC---------------------------CCEEECcCCcccCcCChHHhcCcC
Confidence            6666666666666655543333 333444                           444444444444444444555555


Q ss_pred             CCEEeccCCccccccccccCCCCCCCEEEccCCc
Q 005711          350 LQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNM  383 (681)
Q Consensus       350 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~  383 (681)
                      |++|++++|+++|.+|.. ..+++|+.+++++|.
T Consensus       270 L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          270 LHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             CCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             CCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence            555555555555555443 445555555555554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2.4e-39  Score=351.86  Aligned_cols=368  Identities=20%  Similarity=0.158  Sum_probs=232.3

Q ss_pred             CCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcC-CccccCCCCCCEeeCCCCCCCCccCCchhccccCCccE
Q 005711          106 SFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVV-PDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEK  184 (681)
Q Consensus       106 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~  184 (681)
                      ++|++|+|++|.+++..|..|+++++|++|++++|.+.+.+ |..|.++++|++|++++| .+.+..|..++++ ++|++
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l-~~L~~  107 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAFNGL-ANLEV  107 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TTCEECTTTTTTC-TTCCE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC-ccCccChhhccCc-ccCCE
Confidence            78999999999999888999999999999999999987555 567889999999999988 4566677778888 78888


Q ss_pred             EEccCCcCccccCcc--ccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCccccchh-hccCCCCCEEEccCCcc
Q 005711          185 LDFSFNSFCGEIPES--LYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCF-AASAMSLTVLKLDNNSV  261 (681)
Q Consensus       185 L~L~~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~~~~L~~L~L~~n~l  261 (681)
                      |++++|.+++.+|..  +.++++|++|++++|.+++..                     |.. +..+++|++|++++|.+
T Consensus       108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~---------------------~~~~~~~l~~L~~L~L~~n~l  166 (455)
T 3v47_A          108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ---------------------PASFFLNMRRFHVLDLTFNKV  166 (455)
T ss_dssp             EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCC---------------------CCGGGGGCTTCCEEECTTCCB
T ss_pred             EeCCCCCCCccccCcccccCcccCCEEECCCCccCccC---------------------cccccCCCCcccEEeCCCCcc
Confidence            888888887755544  777888888888777766443                     333 55666777777777777


Q ss_pred             ccCCChhhccc--CcccEEecCCCccccccCcc--------ccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEc
Q 005711          262 VGGIPTCIASL--QALTHLNLSHNHLNYEISPR--------LVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDL  331 (681)
Q Consensus       262 ~~~~p~~l~~l--~~L~~L~L~~n~l~~~~~~~--------l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~L  331 (681)
                      ++..+..+..+  .+|+.|++++|.+.+..+..        +..+++|++|++++|.+++..|..+.......+|+.|++
T Consensus       167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l  246 (455)
T 3v47_A          167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL  246 (455)
T ss_dssp             SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred             cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence            66666666555  56677777777666443332        234567778888888777777776666544457788888


Q ss_pred             cCCCCcCCCcccccCCCCCCEEeccCCccccccccccC--CCCCCCEEEccCCcCccccCcccccCCCcceeeccccccc
Q 005711          332 SHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIG--NLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLS  409 (681)
Q Consensus       332 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~  409 (681)
                      ++|.+.+....              .+.+.+..+..+.  ..++|++|++++|.+.+..|..+..+++|++|++++|.+.
T Consensus       247 ~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  312 (455)
T 3v47_A          247 SNSYNMGSSFG--------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN  312 (455)
T ss_dssp             TTCTTTSCCTT--------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred             ccccccccccc--------------hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccc
Confidence            77765542110              0011111111111  1234455555555554444444444555555555555555


Q ss_pred             ccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccc
Q 005711          410 GEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLF  489 (681)
Q Consensus       410 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~  489 (681)
                      +..+..+..+++|+.|++++|.+++..|..+.++++|++|++++|++++..|..+..+++|++|++++|++++..+..+.
T Consensus       313 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  392 (455)
T 3v47_A          313 KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFD  392 (455)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred             ccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhc
Confidence            44444555555555555555555555555555555555555555555555555555555555555555555544444445


Q ss_pred             cCCccceeecccCccccCCCC
Q 005711          490 SFQAIQMMDFSTNKFMGFIPD  510 (681)
Q Consensus       490 ~l~~L~~L~ls~n~~~~~~p~  510 (681)
                      .+++|+.|++++|++++..|.
T Consensus       393 ~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          393 RLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             TCTTCCEEECCSSCBCCCTTT
T ss_pred             cCCcccEEEccCCCcccCCCc
Confidence            555555555555555555553

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=4.1e-40  Score=357.89  Aligned_cols=378  Identities=20%  Similarity=0.219  Sum_probs=252.5

Q ss_pred             cEEEccCCcCccccCccccCCCCCCEEEccCccCcccccCcC---CcccEEECCCCCCcccc-chhhccCCCCCEEEccC
Q 005711          183 EKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFY---QSLLVLNLGSNRFSGTL-PCFAASAMSLTVLKLDN  258 (681)
Q Consensus       183 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~---~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L~L~~  258 (681)
                      +.++.+++.++ .+|. +  .++|++|++++|.+++..+..+   .+|++|++++|.+.+.+ +..+..+++|++|++++
T Consensus        13 ~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           13 YNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             TEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             cccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            45666777666 5555 2  2677777777777776655443   33666666666665444 34566666666666666


Q ss_pred             CccccCCChhhcccCcccEEecCCCccccccCcc--ccCCCCCcEEeccCCCccCCCChh-hhhcccCCCccEEEccCCC
Q 005711          259 NSVVGGIPTCIASLQALTHLNLSHNHLNYEISPR--LVFFEKLLLLDLSFNDLSGPLPSK-IAQTTEKAGLVLLDLSHNR  335 (681)
Q Consensus       259 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~p~~-~~~~~~~~~L~~L~Ls~n~  335 (681)
                      |++++..|..++++++|++|++++|.+++..+..  +..+++|++|++++|.+++..|.. +..+.   +|++|++++|.
T Consensus        89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~---~L~~L~L~~n~  165 (455)
T 3v47_A           89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR---RFHVLDLTFNK  165 (455)
T ss_dssp             CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT---TCCEEECTTCC
T ss_pred             CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC---cccEEeCCCCc
Confidence            6666666666666666666666666666544333  566666666666666666555544 44444   56666666666


Q ss_pred             CcCCCcccccCC--CCCCEEeccCCccccccccc--------cCCCCCCCEEEccCCcCccccCcccccC---CCcceee
Q 005711          336 FSGEIPLKITEL--KSLQALFLSNNLLIGEIPAR--------IGNLTYLQVIDLSHNMLSGSIPLNIVGC---FQLLALI  402 (681)
Q Consensus       336 l~~~~p~~l~~l--~~L~~L~L~~n~l~~~~~~~--------l~~l~~L~~L~Ls~n~l~~~~p~~~~~~---~~L~~L~  402 (681)
                      +++..|..+..+  .+|+.|++++|.+.+..+..        +..+++|++|++++|.+++..|..+...   .+++.++
T Consensus       166 l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~  245 (455)
T 3v47_A          166 VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI  245 (455)
T ss_dssp             BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEE
T ss_pred             ccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEe
Confidence            666555555443  45666666666665443322        2244556666666666665555544332   4555555


Q ss_pred             cccccccccCccccCCCCCccEEEcccCcceeccccccC--CCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcC
Q 005711          403 VNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLA--GLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKL  480 (681)
Q Consensus       403 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  480 (681)
                      +++|...+...              ..+.+.+..+..+.  ..++|++|++++|.+++..|..+..+++|++|++++|++
T Consensus       246 l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  311 (455)
T 3v47_A          246 LSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI  311 (455)
T ss_dssp             CTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             ecccccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcc
Confidence            55554433211              01111111112222  236788888888888877788888888888888888888


Q ss_pred             cccCCcccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCCCCCC
Q 005711          481 SGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLR  559 (681)
Q Consensus       481 ~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~  559 (681)
                      .+..|..+..+++|+.|++++|++.                 +..|..+.++++|++|+|++|++++..|. +..+++|+
T Consensus       312 ~~~~~~~~~~l~~L~~L~Ls~N~l~-----------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  374 (455)
T 3v47_A          312 NKIDDNAFWGLTHLLKLNLSQNFLG-----------------SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK  374 (455)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCC-----------------EECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             cccChhHhcCcccCCEEECCCCccC-----------------CcChhHhcCcccCCEEECCCCcccccChhhcccccccc
Confidence            8777777777788877777766554                 35577788899999999999999988887 89999999


Q ss_pred             EEECCCCcCcccCCccccCCCCCCeEecccCcceeeCCC
Q 005711          560 ALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPW  598 (681)
Q Consensus       560 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  598 (681)
                      +|++++|++++..+..+..+++|++|++++|+++|.+|.
T Consensus       375 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          375 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             EEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            999999999987777889999999999999999999984

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=3.9e-38  Score=340.11  Aligned_cols=375  Identities=19%  Similarity=0.168  Sum_probs=249.0

Q ss_pred             cccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCch
Q 005711           95 SGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGW  174 (681)
Q Consensus        95 ~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~  174 (681)
                      .+..+..++++++|++|++++|.+++. | .++.+++|++|++++|++++. |  ++.+++|++|++++|++ .+ +|  
T Consensus        31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l-~~-~~--  101 (457)
T 3bz5_A           31 QATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKL-TN-LD--  101 (457)
T ss_dssp             CTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCC-SC-CC--
T ss_pred             CcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCC-ce-ee--
Confidence            344455678889999999999998874 5 588899999999999998864 4  88888888888888853 33 23  


Q ss_pred             hccccCCccEEEccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEE
Q 005711          175 VGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVL  254 (681)
Q Consensus       175 l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L  254 (681)
                      ++++ ++|++|++++|.+++ +|  ++.+++|++|++++|.+++..                        ++.+++|++|
T Consensus       102 ~~~l-~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l~------------------------l~~l~~L~~L  153 (457)
T 3bz5_A          102 VTPL-TKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEID------------------------VSHNTQLTEL  153 (457)
T ss_dssp             CTTC-TTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCCC------------------------CTTCTTCCEE
T ss_pred             cCCC-CcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccceec------------------------cccCCcCCEE
Confidence            6666 788888888888875 44  777888888888877776532                        3344555555


Q ss_pred             EccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCC
Q 005711          255 KLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHN  334 (681)
Q Consensus       255 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n  334 (681)
                      ++++|+..+.+  .++.+++|++|++++|++++ +|  +..+++|+.|++++|.+++.   .+..+   ++|+.|++++|
T Consensus       154 ~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l---~~L~~L~Ls~N  222 (457)
T 3bz5_A          154 DCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQN---IQLTFLDCSSN  222 (457)
T ss_dssp             ECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTC---TTCSEEECCSS
T ss_pred             ECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccC---CCCCEEECcCC
Confidence            55555443333  24555666666666666554 22  55566666666666666543   13333   36777777777


Q ss_pred             CCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCcc
Q 005711          335 RFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQP  414 (681)
Q Consensus       335 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~  414 (681)
                      ++++ +|  +..+++|++|++++|++++..   ++.+++|+.|++++|.              |+.+++++|.+.+.+| 
T Consensus       223 ~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~--------------L~~L~l~~n~~~~~~~-  281 (457)
T 3bz5_A          223 KLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTD--------------LLEIDLTHNTQLIYFQ-  281 (457)
T ss_dssp             CCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCC--------------CSCCCCTTCTTCCEEE-
T ss_pred             cccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCC--------------CCEEECCCCccCCccc-
Confidence            7765 44  566677777777777776543   3455666777666543              3456666666666655 


Q ss_pred             ccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCcc
Q 005711          415 ELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAI  494 (681)
Q Consensus       415 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L  494 (681)
                       +..+++|+.|++++|...+.+|.   ..++|+.|++++|             ++|++|++++|++++ ++  +..+++|
T Consensus       282 -~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~-l~--l~~l~~L  341 (457)
T 3bz5_A          282 -AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTE-LD--VSHNTKL  341 (457)
T ss_dssp             -CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSC-CC--CTTCTTC
T ss_pred             -ccccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCcccc-cc--cccCCcC
Confidence             35667777777777777666664   3345555555544             567778888887776 33  6777778


Q ss_pred             ceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cCC-CCCCCEEECC
Q 005711          495 QMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYR-LRSLRALDLS  564 (681)
Q Consensus       495 ~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~-l~~L~~L~Ls  564 (681)
                      +.|++++|++++ +|....|++++|.++|.     .++..|+.+++++|+++|.+|. +.. ..++....-+
T Consensus       342 ~~L~l~~N~l~~-l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~~~~~~~  407 (457)
T 3bz5_A          342 KSLSCVNAHIQD-FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPG  407 (457)
T ss_dssp             SEEECCSSCCCB-CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBCTTSCCCEEEES
T ss_pred             cEEECCCCCCCC-ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhcccCceeeccCC
Confidence            888888877776 56666777777777765     3566778888888888888876 332 3344444433

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.6e-37  Score=335.26  Aligned_cols=353  Identities=18%  Similarity=0.171  Sum_probs=225.4

Q ss_pred             CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeC
Q 005711           82 GHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELIL  161 (681)
Q Consensus        82 ~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  161 (681)
                      .+++.|+++++.+.+. | .+..+++|++|++++|.+++. |  ++.+++|++|++++|.+++. |  ++++++|++|++
T Consensus        42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L  113 (457)
T 3bz5_A           42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNC  113 (457)
T ss_dssp             TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEEC
T ss_pred             CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEEC
Confidence            4789999999999975 4 799999999999999999985 4  89999999999999999975 4  899999999999


Q ss_pred             CCCCCCCccCCchhccccCCccEEEccCCcCccccCccccCCCCCCEEEccCccCcccc-cCcCCcccEEECCCCCCccc
Q 005711          162 KGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNV-HDFYQSLLVLNLGSNRFSGT  240 (681)
Q Consensus       162 ~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~L~~L~L~~n~l~~~  240 (681)
                      ++|++ .+ +|  ++++ ++|++|++++|.+++ ++  ++++++|++|++++|...+.+ ...+.+|++|++++|++++ 
T Consensus       114 ~~N~l-~~-l~--~~~l-~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-  184 (457)
T 3bz5_A          114 DTNKL-TK-LD--VSQN-PLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-  184 (457)
T ss_dssp             CSSCC-SC-CC--CTTC-TTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-
T ss_pred             CCCcC-Ce-ec--CCCC-CcCCEEECCCCccce-ec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-
Confidence            99954 43 44  7778 899999999999996 33  889999999999999544332 2234456666666666655 


Q ss_pred             cchhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhc
Q 005711          241 LPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQT  320 (681)
Q Consensus       241 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~  320 (681)
                      +|  +..+++|+.|++++|++++.   .++.+++|++|++++|++++ +|  +..+++|+.|++++|.+++..+   ..+
T Consensus       185 l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~---~~l  253 (457)
T 3bz5_A          185 LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDV---STL  253 (457)
T ss_dssp             CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCC---TTC
T ss_pred             ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCH---HHC
Confidence            23  55556666666666666543   25555666666666666654 33  5555566666666665554321   112


Q ss_pred             ccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcce
Q 005711          321 TEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLA  400 (681)
Q Consensus       321 ~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~  400 (681)
                      .   +|+.|+++.|              +|+.|++++|.+.+.+|  ++.+++|+.|++++|...+.+|.   ...+|+.
T Consensus       254 ~---~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~  311 (457)
T 3bz5_A          254 S---KLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITE  311 (457)
T ss_dssp             T---TCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSC
T ss_pred             C---CCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceE
Confidence            2   4555555443              34445556666555554  34556666666666665555553   2233333


Q ss_pred             eecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcC
Q 005711          401 LIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKL  480 (681)
Q Consensus       401 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  480 (681)
                      +++++             +++|+.|++++|++++. +  ++++++|+.|++++|++++        ++.|..|++++|.+
T Consensus       312 L~l~~-------------~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l  367 (457)
T 3bz5_A          312 LDLSQ-------------NPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNF  367 (457)
T ss_dssp             CCCTT-------------CTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSE
T ss_pred             echhh-------------cccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcE
Confidence            33322             24555555555555542 2  5555555555555555553        13344444555555


Q ss_pred             cccCCcccccCCccceeecccCccccCCCCCcccccCCccccccCCcccc
Q 005711          481 SGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLF  530 (681)
Q Consensus       481 ~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~  530 (681)
                      .|.     ..+..|.                 .+|+++|+++|.||..+.
T Consensus       368 ~g~-----~~~~~l~-----------------~l~l~~N~l~g~ip~~~~  395 (457)
T 3bz5_A          368 EAE-----GQTITMP-----------------KETLTNNSLTIAVSPDLL  395 (457)
T ss_dssp             EEE-----EEEEECC-----------------CBCCBTTBEEEECCTTCB
T ss_pred             Eec-----ceeeecC-----------------ccccccCcEEEEcChhHh
Confidence            443     1222333                 456666666666666543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.3e-36  Score=332.09  Aligned_cols=326  Identities=20%  Similarity=0.151  Sum_probs=212.6

Q ss_pred             cccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEE
Q 005711          274 ALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQAL  353 (681)
Q Consensus       274 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  353 (681)
                      +++.|++++|.+++..+..+..+++|++|++++|.+++..|..+..+.   +|++|++++|++++..+..|..+++|++|
T Consensus        33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~---~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  109 (477)
T 2id5_A           33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLF---NLRTLGLRSNRLKLIPLGVFTGLSNLTKL  109 (477)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT---TCCEEECCSSCCCSCCTTSSTTCTTCCEE
T ss_pred             CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCc---cCCEEECCCCcCCccCcccccCCCCCCEE
Confidence            455555555555544444555555555555555555544444444444   55555555555554444445556666666


Q ss_pred             eccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcce
Q 005711          354 FLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQIS  433 (681)
Q Consensus       354 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  433 (681)
                      ++++|.+.+..+..+.++++|++|++++|.+.+..+..+.++++|+.|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus       110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  189 (477)
T 2id5_A          110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN  189 (477)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred             ECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence            66666666555556666666666666666666655666666666666666666666555555666777777777777777


Q ss_pred             eccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccccCCCCCcc
Q 005711          434 GEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVG  513 (681)
Q Consensus       434 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~  513 (681)
                      +..+..+..+++|++|++++|...+.++.......+|++|++++|.+++..+..+..+++|+.|++++|.+.+       
T Consensus       190 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-------  262 (477)
T 2id5_A          190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST-------  262 (477)
T ss_dssp             EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCE-------
T ss_pred             EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCc-------
Confidence            6666667777777777777777666666655555677777777777764333456666667666666665542       


Q ss_pred             cccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccCcc
Q 005711          514 MDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSF  592 (681)
Q Consensus       514 L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l  592 (681)
                                ..+..+..+++|++|+|++|++++..|. +..+++|+.|++++|++++..+..|..+++|+.|++++|++
T Consensus       263 ----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  332 (477)
T 2id5_A          263 ----------IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL  332 (477)
T ss_dssp             ----------ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred             ----------cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence                      4455677788888888888888887777 88888888888888888877777788888888899999988


Q ss_pred             eeeCCCCCCCCCccc-cccCCCCCCCCC
Q 005711          593 SGFVPWKQGYQKFPG-AFAGNPNLCLES  619 (681)
Q Consensus       593 ~~~~p~~~~~~~~~~-~~~gn~~lc~~~  619 (681)
                      .|.++..|.+..... .+.++...|..|
T Consensus       333 ~c~c~~~~~~~~~~~~~~~~~~~~C~~p  360 (477)
T 2id5_A          333 ACDCRLLWVFRRRWRLNFNRQQPTCATP  360 (477)
T ss_dssp             ECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred             cCccchHhHHhhhhccccCccCceeCCc
Confidence            887764443332222 455666666544

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=5e-35  Score=318.25  Aligned_cols=344  Identities=25%  Similarity=0.309  Sum_probs=222.9

Q ss_pred             CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeC
Q 005711           82 GHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELIL  161 (681)
Q Consensus        82 ~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  161 (681)
                      .+++.|+++++.+.. ++ .+..+++|++|++++|.+++..+  ++++++|++|++++|.+.+..|  ++++++|++|++
T Consensus        46 ~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L  119 (466)
T 1o6v_A           46 DQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL  119 (466)
T ss_dssp             HTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred             ccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEEC
Confidence            368888888888764 33 47888999999999998887654  8889999999999998886544  888999999999


Q ss_pred             CCCCCCCccCCchhccccCCccEEEccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCcccc
Q 005711          162 KGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTL  241 (681)
Q Consensus       162 ~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~  241 (681)
                      ++|.+ .+ ++. +.++ ++|++|++++|.+.+ ++ .+..+++|++|+++ |.+.+..                     
T Consensus       120 ~~n~l-~~-~~~-~~~l-~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~---------------------  171 (466)
T 1o6v_A          120 FNNQI-TD-IDP-LKNL-TNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLK---------------------  171 (466)
T ss_dssp             CSSCC-CC-CGG-GTTC-TTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCG---------------------
T ss_pred             CCCCC-CC-ChH-HcCC-CCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCch---------------------
Confidence            98843 33 333 6777 788888888888874 33 47888888888886 3333221                     


Q ss_pred             chhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcc
Q 005711          242 PCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTT  321 (681)
Q Consensus       242 ~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~  321 (681)
                        .+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++..+  ++.+++|+.|++++|.+++. + .+..+ 
T Consensus       172 --~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~l~~l-  242 (466)
T 1o6v_A          172 --PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI-G-TLASL-  242 (466)
T ss_dssp             --GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-G-GGGGC-
T ss_pred             --hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc-h-hhhcC-
Confidence              144555555555555555432  235555566666666665554333  44556666666666655532 1 22222 


Q ss_pred             cCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCccee
Q 005711          322 EKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLAL  401 (681)
Q Consensus       322 ~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L  401 (681)
                        ++|+.|++++|.+++..|  +..+++|++|++++|.+++..+  +..+++|++|++++|.+.+..+  +..+++|+.|
T Consensus       243 --~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L  314 (466)
T 1o6v_A          243 --TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYL  314 (466)
T ss_dssp             --TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEE
T ss_pred             --CCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEE
Confidence              256666666666664433  5556666666666666654433  5566666666666666665433  5566666666


Q ss_pred             ecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCc
Q 005711          402 IVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLS  481 (681)
Q Consensus       402 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  481 (681)
                      ++++|.+.+..+  +..+++|+.|++++|.+++.  ..+..+++|++|++++|++++..|  +..+++|++|++++|.++
T Consensus       315 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~  388 (466)
T 1o6v_A          315 TLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT  388 (466)
T ss_dssp             ECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred             ECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence            666666665544  45666677777777766654  356666777777777777766555  566677777777777666


Q ss_pred             c
Q 005711          482 G  482 (681)
Q Consensus       482 ~  482 (681)
                      +
T Consensus       389 ~  389 (466)
T 1o6v_A          389 N  389 (466)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=8.2e-35  Score=316.56  Aligned_cols=347  Identities=24%  Similarity=0.332  Sum_probs=293.7

Q ss_pred             CCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCcc
Q 005711          104 KLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLE  183 (681)
Q Consensus       104 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~  183 (681)
                      .++++++|+++++.+.. +|. +..+++|++|++++|.+++..|  +.++++|++|++++|.+ .+. +. ++++ ++|+
T Consensus        44 ~l~~l~~L~l~~~~i~~-l~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l-~~~-~~-~~~l-~~L~  115 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKS-IDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI-ADI-TP-LANL-TNLT  115 (466)
T ss_dssp             HHHTCCEEECCSSCCCC-CTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC-CCC-GG-GTTC-TTCC
T ss_pred             HhccccEEecCCCCCcc-Ccc-hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCcc-ccC-hh-hcCC-CCCC
Confidence            45789999999999875 453 8889999999999999986544  99999999999999944 333 33 7788 8999


Q ss_pred             EEEccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCcccc
Q 005711          184 KLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVG  263 (681)
Q Consensus       184 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~  263 (681)
                      +|++++|.+++. +. +.++++|++|++++|.+++                      ++ .+..+++|++|+++ +.+.+
T Consensus       116 ~L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~----------------------~~-~~~~l~~L~~L~l~-~~~~~  169 (466)
T 1o6v_A          116 GLTLFNNQITDI-DP-LKNLTNLNRLELSSNTISD----------------------IS-ALSGLTSLQQLSFG-NQVTD  169 (466)
T ss_dssp             EEECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECC----------------------CG-GGTTCTTCSEEEEE-ESCCC
T ss_pred             EEECCCCCCCCC-hH-HcCCCCCCEEECCCCccCC----------------------Ch-hhccCCcccEeecC-CcccC
Confidence            999999998854 33 8889999999999887753                      22 36778899999996 45543


Q ss_pred             CCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCccc
Q 005711          264 GIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLK  343 (681)
Q Consensus       264 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~  343 (681)
                      .  ..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..|  ++.+.   +|+.|++++|.+++.  ..
T Consensus       170 ~--~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~---~L~~L~l~~n~l~~~--~~  238 (466)
T 1o6v_A          170 L--KPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILT---NLDELSLNGNQLKDI--GT  238 (466)
T ss_dssp             C--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCT---TCCEEECCSSCCCCC--GG
T ss_pred             c--hhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccC---CCCEEECCCCCcccc--hh
Confidence            3  2388999999999999998753  358899999999999999987655  44444   899999999999853  35


Q ss_pred             ccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCcc
Q 005711          344 ITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLK  423 (681)
Q Consensus       344 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  423 (681)
                      +..+++|++|++++|.+.+..+  +..+++|++|++++|.+++..+  +..+++|+.|++++|.+.+..+  +..+++|+
T Consensus       239 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~  312 (466)
T 1o6v_A          239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLT  312 (466)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCS
T ss_pred             hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCC
Confidence            7889999999999999987655  8899999999999999997554  7889999999999999998655  78899999


Q ss_pred             EEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCc
Q 005711          424 ILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNK  503 (681)
Q Consensus       424 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~  503 (681)
                      .|++++|.+++..|  +..+++|++|++++|++++.  ..+..+++|++|++++|++++..|  +..+++|+.|++++|+
T Consensus       313 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~  386 (466)
T 1o6v_A          313 YLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA  386 (466)
T ss_dssp             EEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEE
T ss_pred             EEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCc
Confidence            99999999998766  78899999999999999975  468899999999999999998776  8899999999999999


Q ss_pred             cccC
Q 005711          504 FMGF  507 (681)
Q Consensus       504 ~~~~  507 (681)
                      +++.
T Consensus       387 ~~~~  390 (466)
T 1o6v_A          387 WTNA  390 (466)
T ss_dssp             EECC
T ss_pred             ccCC
Confidence            9873

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=4.3e-35  Score=320.15  Aligned_cols=252  Identities=21%  Similarity=0.171  Sum_probs=112.1

Q ss_pred             ccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccC
Q 005711          227 LLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSF  306 (681)
Q Consensus       227 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  306 (681)
                      +++|++++|++++..+..+..+++|++|++++|.+++..|..+.++++|++|++++|.++...+..+..+++|++|++++
T Consensus        34 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  113 (477)
T 2id5_A           34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISE  113 (477)
T ss_dssp             CSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTT
T ss_pred             CcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCC
Confidence            34444444444444444555555555555555555554455555555555555555555433333344455555555555


Q ss_pred             CCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCcc
Q 005711          307 NDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSG  386 (681)
Q Consensus       307 n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  386 (681)
                      |.+++..|..+..+.   +|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++|+.|++++|.+.+
T Consensus       114 n~i~~~~~~~~~~l~---~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~  190 (477)
T 2id5_A          114 NKIVILLDYMFQDLY---NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA  190 (477)
T ss_dssp             SCCCEECTTTTTTCT---TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred             CccccCChhHccccc---cCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence            554444444443333   44445555554444444444444455555555554444433444444445555554444444


Q ss_pred             ccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhc
Q 005711          387 SIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITK  466 (681)
Q Consensus       387 ~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  466 (681)
                      ..+..+..+++|+.|++++|...+.++.......+|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..
T Consensus       191 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  270 (477)
T 2id5_A          191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE  270 (477)
T ss_dssp             ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT
T ss_pred             eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc
Confidence            33333333444444444433333333333222333444444444443222233333444444444444443333333333


Q ss_pred             CCCCCEEEccCCcCc
Q 005711          467 WTNLKYFSIARNKLS  481 (681)
Q Consensus       467 l~~L~~L~L~~n~l~  481 (681)
                      +++|++|++++|++.
T Consensus       271 l~~L~~L~L~~n~l~  285 (477)
T 2id5_A          271 LLRLQEIQLVGGQLA  285 (477)
T ss_dssp             CTTCCEEECCSSCCS
T ss_pred             cccCCEEECCCCccc
Confidence            344444444444333

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=8.4e-34  Score=301.44  Aligned_cols=332  Identities=20%  Similarity=0.170  Sum_probs=241.1

Q ss_pred             CCCCCEEEccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCcc
Q 005711          248 AMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLV  327 (681)
Q Consensus       248 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~  327 (681)
                      +.+++.|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+.   +|+
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~---~L~  120 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP---LLT  120 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT---TCC
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCC---CCC
Confidence            45666777777666644444456667777777777777665556667777777777777777766565555555   677


Q ss_pred             EEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeeccccc
Q 005711          328 LLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNN  407 (681)
Q Consensus       328 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~  407 (681)
                      +|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++|++|++++|.+++.   .+..+++|+.+++++|.
T Consensus       121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~  197 (390)
T 3o6n_A          121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL  197 (390)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred             EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccc
Confidence            777777777743334456777777777777777766666677777777777777777653   24556777777777777


Q ss_pred             ccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcc
Q 005711          408 LSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNW  487 (681)
Q Consensus       408 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~  487 (681)
                      +.+.     ...++|+.|++++|.+... |..  ..++|++|++++|.+++.  ..+..+++|++|++++|.+++..|..
T Consensus       198 l~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~  267 (390)
T 3o6n_A          198 LSTL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP  267 (390)
T ss_dssp             CSEE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred             cccc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhH
Confidence            6642     3345788999999988754 332  357899999999999864  57888999999999999999888888


Q ss_pred             cccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCCcCCCCCCCEEECCCCc
Q 005711          488 LFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNS  567 (681)
Q Consensus       488 ~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L~Ls~N~  567 (681)
                      +..+++|+.|++++|+++                  .+|..+..+++|++|+|++|++++..+.+..+++|+.|++++|+
T Consensus       268 ~~~l~~L~~L~L~~n~l~------------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~  329 (390)
T 3o6n_A          268 FVKMQRLERLYISNNRLV------------------ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS  329 (390)
T ss_dssp             GTTCSSCCEEECCSSCCC------------------EEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC
T ss_pred             ccccccCCEEECCCCcCc------------------ccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCc
Confidence            888999998888888775                  34556677899999999999999544448889999999999999


Q ss_pred             CcccCCccccCCCCCCeEecccCcceeeCCCCCCCCCccc-cccCCCCCCC
Q 005711          568 LTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPG-AFAGNPNLCL  617 (681)
Q Consensus       568 l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~-~~~gn~~lc~  617 (681)
                      +++. |  +..+++|+.|++++|++.|..... .+..+.. .+.+++..|.
T Consensus       330 i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~~-~~~~~~~~~~~~~~~~c~  376 (390)
T 3o6n_A          330 IVTL-K--LSTHHTLKNLTLSHNDWDCNSLRA-LFRNVARPAVDDADQHCK  376 (390)
T ss_dssp             CCCC-C--CCTTCCCSEEECCSSCEEHHHHHH-HTTTCCTTTBCCCCSCCC
T ss_pred             ccee-C--chhhccCCEEEcCCCCccchhHHH-HHHHHHhhcccccCceec
Confidence            9854 3  677899999999999999864321 1222222 4555555554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.4e-34  Score=297.30  Aligned_cols=257  Identities=29%  Similarity=0.468  Sum_probs=182.1

Q ss_pred             CccEEEccCCCCcC--CCcccccCCCCCCEEeccC-CccccccccccCCCCCCCEEEccCCcCccccCcccccCCCccee
Q 005711          325 GLVLLDLSHNRFSG--EIPLKITELKSLQALFLSN-NLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLAL  401 (681)
Q Consensus       325 ~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L  401 (681)
                      +++.|++++|.+++  .+|..+..+++|++|++++ |.+.+.+|..++++++|++|++++|.+++               
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~---------------  115 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG---------------  115 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE---------------
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC---------------
Confidence            45555555555555  4555555555555555552 55555555555555555555555555444               


Q ss_pred             ecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCC-CCCEEEccCCcC
Q 005711          402 IVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWT-NLKYFSIARNKL  480 (681)
Q Consensus       402 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l  480 (681)
                               .+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+..++ +|++|++++|.+
T Consensus       116 ---------~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l  186 (313)
T 1ogq_A          116 ---------AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             ---------ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             ---------cCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence                     4444555566666666666666666666666666777777777776666666666666 677777777777


Q ss_pred             cccCCcccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCCcCCCCCCCE
Q 005711          481 SGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRA  560 (681)
Q Consensus       481 ~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~  560 (681)
                      ++.+|..+..+. |+.|++++|++                 ++.+|..+..+++|++|+|++|++++.+|.+..+++|++
T Consensus       187 ~~~~~~~~~~l~-L~~L~Ls~N~l-----------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~  248 (313)
T 1ogq_A          187 TGKIPPTFANLN-LAFVDLSRNML-----------------EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNG  248 (313)
T ss_dssp             EEECCGGGGGCC-CSEEECCSSEE-----------------EECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCE
T ss_pred             eccCChHHhCCc-ccEEECcCCcc-----------------cCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCE
Confidence            766776666655 55555554444                 346677788889999999999999988888888999999


Q ss_pred             EECCCCcCcccCCccccCCCCCCeEecccCcceeeCCCCCCCCCccc-cccCCCCCCCCCCCCCC
Q 005711          561 LDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPG-AFAGNPNLCLESSHGEC  624 (681)
Q Consensus       561 L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~-~~~gn~~lc~~~~~~~c  624 (681)
                      |++++|++++.+|..+..+++|++|++++|+++|.+|....+..+.. .+.||+.+||.|.. .|
T Consensus       249 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             EECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             EECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence            99999999999999999999999999999999999998776767766 89999999998765 46

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=1.2e-33  Score=316.74  Aligned_cols=333  Identities=21%  Similarity=0.180  Sum_probs=236.1

Q ss_pred             CCCCCEEEccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCcc
Q 005711          248 AMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLV  327 (681)
Q Consensus       248 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~  327 (681)
                      +.+++.+++++|.+....+..+..+++|++|++++|.+++..+..+..+++|++|+|++|.+++..|..++.+.   +|+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~---~L~  126 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP---LLT  126 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT---TCC
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCC---CCC
Confidence            34556666666665544444455666666666666666655555666666666666666666655555555554   666


Q ss_pred             EEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeeccccc
Q 005711          328 LLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNN  407 (681)
Q Consensus       328 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~  407 (681)
                      +|++++|.+++..+..|..+++|++|++++|.+++..|..+.++++|++|++++|.+++.   .+..+++|+.+++++|.
T Consensus       127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~  203 (597)
T 3oja_B          127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL  203 (597)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred             EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCc
Confidence            666666666644444456667777777777777666666677777777777777776653   23455667777777776


Q ss_pred             ccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcc
Q 005711          408 LSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNW  487 (681)
Q Consensus       408 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~  487 (681)
                      +.+.     ...++|+.|++++|.+....+. +  .++|+.|++++|.+++.  ..+..+++|++|++++|.+.+..|..
T Consensus       204 l~~l-----~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~  273 (597)
T 3oja_B          204 LSTL-----AIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP  273 (597)
T ss_dssp             CSEE-----ECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred             cccc-----cCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHH
Confidence            6542     3345788888888888754332 2  36889999999998863  67888999999999999999888888


Q ss_pred             cccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCC
Q 005711          488 LFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHN  566 (681)
Q Consensus       488 ~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N  566 (681)
                      +..+++|+.|++++|+++                  .+|..+..+++|+.|+|++|.+++ +|. ++.+++|+.|++++|
T Consensus       274 ~~~l~~L~~L~Ls~N~l~------------------~l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N  334 (597)
T 3oja_B          274 FVKMQRLERLYISNNRLV------------------ALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHN  334 (597)
T ss_dssp             GTTCSSCCEEECTTSCCC------------------EEECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSS
T ss_pred             hcCccCCCEEECCCCCCC------------------CCCcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCC
Confidence            888889988888888775                  345666778899999999999994 555 888999999999999


Q ss_pred             cCcccCCccccCCCCCCeEecccCcceeeCCCCCCCCCccc-cccCCCCCCCCC
Q 005711          567 SLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPG-AFAGNPNLCLES  619 (681)
Q Consensus       567 ~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~-~~~gn~~lc~~~  619 (681)
                      .+++. |  +..+++|+.|++++|++.|.++..+ +..+.. .+.+++..|+.+
T Consensus       335 ~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~~~-~~~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          335 SIVTL-K--LSTHHTLKNLTLSHNDWDCNSLRAL-FRNVARPAVDDADQHCKID  384 (597)
T ss_dssp             CCCCC-C--CCTTCCCSEEECCSSCEEHHHHHHH-TTTCCTTTBCCCCCCCCTT
T ss_pred             CCCCc-C--hhhcCCCCEEEeeCCCCCChhHHHH-HHHHhhhccccccccCCcc
Confidence            99865 3  6678899999999999998754322 333333 577888888753

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2.7e-33  Score=297.57  Aligned_cols=350  Identities=18%  Similarity=0.156  Sum_probs=230.1

Q ss_pred             CCCC-CCCCCCC-CCceeecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEcc
Q 005711           61 LSSW-VGSNCTN-WTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLS  138 (681)
Q Consensus        61 ~~~w-~~~~cc~-w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  138 (681)
                      +++| .+.+||. |.+..|....     +.+............-..++++++|++++|.++...+..|..+++|++|+++
T Consensus         3 ~~~~~~~~~C~~~~~~~~c~~~~-----~~i~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~   77 (390)
T 3o6n_A            3 VKPRQPEYKCIDSNLQYDCVFYD-----VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN   77 (390)
T ss_dssp             ----CCEECBCC------EEEES-----CEECSSCCCCEESCSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECT
T ss_pred             cCCCCCccceehhhhhhccceee-----eeeecccccccccccccccCCceEEEecCCchhhCChhHhcccccCcEEECC
Confidence            5678 4567775 6555554222     1222222221222223456889999999998887666667889999999999


Q ss_pred             CCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCCcCccccCccccCCCCCCEEEccCccCcc
Q 005711          139 YNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTG  218 (681)
Q Consensus       139 ~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  218 (681)
                      +|.+++..+..|.++++|++|++++| .+.+..|..++++ ++|++|++++|.++...+..+.++++|++|++++|.+++
T Consensus        78 ~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~  155 (390)
T 3o6n_A           78 DLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNV-PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER  155 (390)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred             CCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCC-CCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCc
Confidence            99998777778999999999999988 4556666777777 788888888888884333446788888888888877765


Q ss_pred             cccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCC
Q 005711          219 NVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEK  298 (681)
Q Consensus       219 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  298 (681)
                      ..                     +..+..+++|++|++++|++++.   .+..+++|++|++++|.+++     +...++
T Consensus       156 ~~---------------------~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~  206 (390)
T 3o6n_A          156 IE---------------------DDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIA  206 (390)
T ss_dssp             CC---------------------TTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSS
T ss_pred             cC---------------------hhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----cCCCCc
Confidence            43                     33445555566666666655532   23445566666666665542     223345


Q ss_pred             CcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEE
Q 005711          299 LLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVID  378 (681)
Q Consensus       299 L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  378 (681)
                      |+.|++++|.+... |...     .++|+.|++++|.+++.  ..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus       207 L~~L~l~~n~l~~~-~~~~-----~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  278 (390)
T 3o6n_A          207 VEELDASHNSINVV-RGPV-----NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY  278 (390)
T ss_dssp             CSEEECCSSCCCEE-ECCC-----CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred             ceEEECCCCeeeec-cccc-----cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEE
Confidence            66666666666532 2211     12677777777777643  3566677777777777777776677777777777777


Q ss_pred             ccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCC
Q 005711          379 LSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSG  458 (681)
Q Consensus       379 Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~  458 (681)
                      +++|.+++ +|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.++.. +  +..+++|++|++++|++..
T Consensus       279 L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          279 ISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             CCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred             CCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccc
Confidence            77777764 4555566777777777777776 3455566778888888888888743 3  6678888888888888875


Q ss_pred             c
Q 005711          459 S  459 (681)
Q Consensus       459 ~  459 (681)
                      .
T Consensus       354 ~  354 (390)
T 3o6n_A          354 N  354 (390)
T ss_dssp             H
T ss_pred             h
Confidence            4

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=8.9e-33  Score=309.68  Aligned_cols=312  Identities=19%  Similarity=0.166  Sum_probs=220.5

Q ss_pred             CCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCcc
Q 005711          104 KLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLE  183 (681)
Q Consensus       104 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~  183 (681)
                      .+++++.+++++|.+....+..|+++++|++|+|++|.+++..|..|+.+++|++|++++| .+.+..|..++++ ++|+
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l-~~L~  126 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNV-PLLT  126 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTC-TTCC
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCC-CCCC
Confidence            4678899999999888777777888999999999999998887788888999999999888 4566666677777 7888


Q ss_pred             EEEccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCcccc
Q 005711          184 KLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVG  263 (681)
Q Consensus       184 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~  263 (681)
                      +|++++|.+++..+..|+++++|++|++++|.+++..                     |..+..+++|++|++++|.+++
T Consensus       127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~---------------------~~~~~~l~~L~~L~L~~N~l~~  185 (597)
T 3oja_B          127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE---------------------DDTFQATTSLQNLQLSSNRLTH  185 (597)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC---------------------TTTTTTCTTCCEEECTTSCCSB
T ss_pred             EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCC---------------------hhhhhcCCcCcEEECcCCCCCC
Confidence            8888888888554555678888888888877766543                     4445555566666666665554


Q ss_pred             CCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCccc
Q 005711          264 GIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLK  343 (681)
Q Consensus       264 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~  343 (681)
                      .   .++.+++|+.|++++|.+++     +...++|+.|++++|.++.. |..+.     ++|+.|++++|.+++.  ..
T Consensus       186 ~---~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~-~~~~~-----~~L~~L~L~~n~l~~~--~~  249 (597)
T 3oja_B          186 V---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV-RGPVN-----VELTILKLQHNNLTDT--AW  249 (597)
T ss_dssp             C---CGGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEE-ECSCC-----SCCCEEECCSSCCCCC--GG
T ss_pred             c---ChhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccc-ccccC-----CCCCEEECCCCCCCCC--hh
Confidence            3   13445566666666665543     22334566666666666532 21111     2677777777777652  45


Q ss_pred             ccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCcc
Q 005711          344 ITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLK  423 (681)
Q Consensus       344 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  423 (681)
                      +..+++|+.|++++|.+.+..|..++.+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. .+|..+..+++|+
T Consensus       250 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~  327 (597)
T 3oja_B          250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE  327 (597)
T ss_dssp             GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCS
T ss_pred             hccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCC
Confidence            6677777777777777777777777777777777777777765 4555566777777777777777 4566667778888


Q ss_pred             EEEcccCcceeccccccCCCCCCcEEECCCCcCCCc
Q 005711          424 ILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGS  459 (681)
Q Consensus       424 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~  459 (681)
                      .|++++|.+.+. +  +..+++|+.|++++|++.+.
T Consensus       328 ~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          328 NLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             EEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred             EEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCCh
Confidence            888888888754 2  56778888888888888754

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.2e-31  Score=280.12  Aligned_cols=305  Identities=24%  Similarity=0.321  Sum_probs=211.6

Q ss_pred             ccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCC
Q 005711          246 ASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAG  325 (681)
Q Consensus       246 ~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~  325 (681)
                      ..+++|++|+++++.+.. ++ .+..+++|++|++++|.+++.. . +..+++|++|++++|.+++ +| .+..+.   +
T Consensus        41 ~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~-~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~---~  111 (347)
T 4fmz_A           41 EELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDIS-P-LSNLVKLTNLYIGTNKITD-IS-ALQNLT---N  111 (347)
T ss_dssp             HHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCC-CG-GGTTCT---T
T ss_pred             hhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccch-h-hhcCCcCCEEEccCCcccC-ch-HHcCCC---c
Confidence            345566666666666653 23 2566666777777666665332 2 6666777777777776653 22 233333   6


Q ss_pred             ccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeeccc
Q 005711          326 LVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNN  405 (681)
Q Consensus       326 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~  405 (681)
                      |++|++++|.+++. +. +..+++|++|++++|.....++. +..+++|++|++++|.+.+..+  +..+++|+.|++++
T Consensus       112 L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~  186 (347)
T 4fmz_A          112 LRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNY  186 (347)
T ss_dssp             CSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTT
T ss_pred             CCEEECcCCcccCc-hh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccC
Confidence            77777777777643 32 66677777777777755544433 6777777777777777664433  56677777777777


Q ss_pred             ccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCC
Q 005711          406 NNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLP  485 (681)
Q Consensus       406 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p  485 (681)
                      |.+.+..+  +..+++|+.+++++|.+.+..+  +..+++|++|++++|.+++..+  +..+++|++|++++|.+++ + 
T Consensus       187 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-  258 (347)
T 4fmz_A          187 NQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I-  258 (347)
T ss_dssp             SCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-
T ss_pred             Cccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C-
Confidence            77665433  6677788888888888775544  6777888888888888875443  7778888888888888764 2 


Q ss_pred             cccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCCCCCCEEECC
Q 005711          486 NWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLS  564 (681)
Q Consensus       486 ~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls  564 (681)
                      +.+..+++|+.|++++|++.+                  + +.+..+++|++|++++|++++..|. +..+++|+.|+++
T Consensus       259 ~~~~~l~~L~~L~l~~n~l~~------------------~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  319 (347)
T 4fmz_A          259 NAVKDLTKLKMLNVGSNQISD------------------I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS  319 (347)
T ss_dssp             GGGTTCTTCCEEECCSSCCCC------------------C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECC
T ss_pred             hhHhcCCCcCEEEccCCccCC------------------C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEcc
Confidence            356677777777777776542                  2 3467788999999999999887777 8889999999999


Q ss_pred             CCcCcccCCccccCCCCCCeEecccCcce
Q 005711          565 HNSLTGQIPGNISSLQELTLLNLSYNSFS  593 (681)
Q Consensus       565 ~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  593 (681)
                      +|.+++..|  +..+++|++|++++|+++
T Consensus       320 ~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          320 QNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             SSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             CCccccccC--hhhhhccceeehhhhccc
Confidence            999997766  788999999999999875

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=3.3e-31  Score=276.88  Aligned_cols=305  Identities=22%  Similarity=0.291  Sum_probs=157.2

Q ss_pred             CCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCcc
Q 005711          104 KLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLE  183 (681)
Q Consensus       104 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~  183 (681)
                      .+++|++|+++++.+.. ++ .+..+++|++|++++|++++. |. +.++++|++|++++|.+. . +| .+..+ ++|+
T Consensus        42 ~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~-~-~~-~~~~l-~~L~  113 (347)
T 4fmz_A           42 ELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKIT-D-IS-ALQNL-TNLR  113 (347)
T ss_dssp             HHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-C-CG-GGTTC-TTCS
T ss_pred             hcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCccc-C-ch-HHcCC-CcCC
Confidence            44556666666665553 22 255566666666666666532 22 555666666666555321 1 22 34444 4555


Q ss_pred             EEEccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCcccc
Q 005711          184 KLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVG  263 (681)
Q Consensus       184 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~  263 (681)
                      +|++++|.+.+ ++. +..+++|++|++++|....                     . +..+..+++|++|++++|.+.+
T Consensus       114 ~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~---------------------~-~~~~~~l~~L~~L~l~~~~~~~  169 (347)
T 4fmz_A          114 ELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLS---------------------D-LSPLSNMTGLNYLTVTESKVKD  169 (347)
T ss_dssp             EEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCC---------------------C-CGGGTTCTTCCEEECCSSCCCC
T ss_pred             EEECcCCcccC-chh-hccCCceeEEECCCCCCcc---------------------c-ccchhhCCCCcEEEecCCCcCC
Confidence            55555555542 222 5555555555555543221                     1 1124445555555555555443


Q ss_pred             CCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCccc
Q 005711          264 GIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLK  343 (681)
Q Consensus       264 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~  343 (681)
                      ..+  +..+++|++|++++|.+.+..+  +..+++|+.+++++|.+++..+  +..+.   +|+.|++++|.+++..+  
T Consensus       170 ~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~---~L~~L~l~~n~l~~~~~--  238 (347)
T 4fmz_A          170 VTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMT---RLNSLKIGNNKITDLSP--  238 (347)
T ss_dssp             CGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCT---TCCEEECCSSCCCCCGG--
T ss_pred             chh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCC---cCCEEEccCCccCCCcc--
Confidence            222  4455555555555555442221  4445555555555555443222  22222   45555555555553222  


Q ss_pred             ccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCcc
Q 005711          344 ITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLK  423 (681)
Q Consensus       344 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  423 (681)
                      +..+++|++|++++|.+++.  +.+..+++|++|++++|.+++                        .  ..+..+++|+
T Consensus       239 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~------------------------~--~~~~~l~~L~  290 (347)
T 4fmz_A          239 LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD------------------------I--SVLNNLSQLN  290 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC------------------------C--GGGGGCTTCS
T ss_pred             hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC------------------------C--hhhcCCCCCC
Confidence            44555555555555555432  234555555555555555443                        2  1244566666


Q ss_pred             EEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCc
Q 005711          424 ILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLS  481 (681)
Q Consensus       424 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  481 (681)
                      .|++++|.+++..+..+..+++|++|++++|++++..|  +..+++|++|++++|.++
T Consensus       291 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             EEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             EEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            77777776666666666667777777777777665544  566677777777777654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=100.00  E-value=7.5e-33  Score=286.02  Aligned_cols=276  Identities=22%  Similarity=0.234  Sum_probs=177.4

Q ss_pred             CCHHhHHHHHHHHhcCC-CCCCCCCCCC-----CCCCCCCCceeecC--------CCCcEEEEEcCCCCCcccccccccC
Q 005711           39 LNLEDKASLLLFKSLVQ-DPTQKLSSWV-----GSNCTNWTGVACNF--------QTGHVVSINLTDTSLSGQVHPRLCK  104 (681)
Q Consensus        39 ~~~~~~~~l~~~~~~~~-~~~~~~~~w~-----~~~cc~w~gv~c~~--------~~~~v~~L~L~~~~l~g~~~~~l~~  104 (681)
                      ...+++.||++||+.+. ++.+...+|.     ..++|.|.|+.|+.        ...+|+.|+|+++.+. .+|+.+++
T Consensus        24 ~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~  102 (328)
T 4fcg_A           24 ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFR  102 (328)
T ss_dssp             CCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGG
T ss_pred             cCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhh
Confidence            34466779999999884 5555567882     46789999999952        3467888888888877 66777777


Q ss_pred             CCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccE
Q 005711          105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEK  184 (681)
Q Consensus       105 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~  184 (681)
                      +++|++|+|++|.++ .+|..++++++|++|+|++|.++ .+|..|+++++|++|++++| ...+.+|..++..      
T Consensus       103 l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n-~~~~~~p~~~~~~------  173 (328)
T 4fcg_A          103 LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRAC-PELTELPEPLAST------  173 (328)
T ss_dssp             GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEE-TTCCCCCSCSEEE------
T ss_pred             CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCC-CCccccChhHhhc------
Confidence            888888888888877 67777788888888888888877 66777777878888887776 3445566554431      


Q ss_pred             EEccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCccccC
Q 005711          185 LDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGG  264 (681)
Q Consensus       185 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~  264 (681)
                                ..+..+.++++|++|++++|.++                      .+|..+..+++|++|++++|.+++ 
T Consensus       174 ----------~~~~~~~~l~~L~~L~L~~n~l~----------------------~lp~~l~~l~~L~~L~L~~N~l~~-  220 (328)
T 4fcg_A          174 ----------DASGEHQGLVNLQSLRLEWTGIR----------------------SLPASIANLQNLKSLKIRNSPLSA-  220 (328)
T ss_dssp             ----------C-CCCEEESTTCCEEEEEEECCC----------------------CCCGGGGGCTTCCEEEEESSCCCC-
T ss_pred             ----------cchhhhccCCCCCEEECcCCCcC----------------------cchHhhcCCCCCCEEEccCCCCCc-
Confidence                      11112333555555555554443                      334444555555555555555553 


Q ss_pred             CChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccc
Q 005711          265 IPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI  344 (681)
Q Consensus       265 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l  344 (681)
                      +|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+.   +|+.|++++|.+.+.+|..+
T Consensus       221 l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~---~L~~L~L~~n~~~~~iP~~l  297 (328)
T 4fcg_A          221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT---QLEKLDLRGCVNLSRLPSLI  297 (328)
T ss_dssp             CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCT---TCCEEECTTCTTCCCCCGGG
T ss_pred             CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCC---CCCEEeCCCCCchhhccHHH
Confidence            444455555566666665555555555555666666666666666666665555544   56666666666666666666


Q ss_pred             cCCCCCCEEeccCCcc
Q 005711          345 TELKSLQALFLSNNLL  360 (681)
Q Consensus       345 ~~l~~L~~L~L~~n~l  360 (681)
                      +.+++|+.+++..+.+
T Consensus       298 ~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          298 AQLPANCIILVPPHLQ  313 (328)
T ss_dssp             GGSCTTCEEECCGGGS
T ss_pred             hhccCceEEeCCHHHH
Confidence            6666666666665543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=4e-34  Score=311.18  Aligned_cols=280  Identities=19%  Similarity=0.176  Sum_probs=144.4

Q ss_pred             CccEEEccCCcCcc----ccCccccCCCCCCEEEccCccCcccccCc--------CCcccEEECCCCCCccc----cchh
Q 005711          181 NLEKLDFSFNSFCG----EIPESLYYLKSLKHLDLEKNNLTGNVHDF--------YQSLLVLNLGSNRFSGT----LPCF  244 (681)
Q Consensus       181 ~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~~~~--------~~~L~~L~L~~n~l~~~----~~~~  244 (681)
                      +|++|++++|.++.    .++..+..+++|++|++++|.+++..+..        ..+|++|++++|++++.    ++..
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  165 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV  165 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence            56677777766663    45666777777777777777765432221        12355555555555442    2444


Q ss_pred             hccCCCCCEEEccCCccccCCChhhc-----ccCcccEEecCCCccccc----cCccccCCCCCcEEeccCCCccCCCCh
Q 005711          245 AASAMSLTVLKLDNNSVVGGIPTCIA-----SLQALTHLNLSHNHLNYE----ISPRLVFFEKLLLLDLSFNDLSGPLPS  315 (681)
Q Consensus       245 ~~~~~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~p~  315 (681)
                      +..+++|++|++++|.++...+..+.     ..++|++|++++|.++..    ++..+..+++|++|++++|.+++....
T Consensus       166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  245 (461)
T 1z7x_W          166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA  245 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred             HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence            55556666666666665543333332     134555666665555532    233444455555555555554422111


Q ss_pred             hhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccc----cccccCCCCCCCEEEccCCcCccccCcc
Q 005711          316 KIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGE----IPARIGNLTYLQVIDLSHNMLSGSIPLN  391 (681)
Q Consensus       316 ~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~p~~  391 (681)
                      .+.                      +..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+.+..+..
T Consensus       246 ~l~----------------------~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~  303 (461)
T 1z7x_W          246 ELC----------------------PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL  303 (461)
T ss_dssp             HHH----------------------HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH
T ss_pred             HHH----------------------HHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHH
Confidence            111                      11112344445555555444432    2333444445555555555444332222


Q ss_pred             ccc-----CCCcceeeccccccccc----CccccCCCCCccEEEcccCcceeccccccCC-----CCCCcEEECCCCcCC
Q 005711          392 IVG-----CFQLLALIVNNNNLSGE----IQPELDALDSLKILDISNNQISGEIPLTLAG-----LKSLEIVDFSSNNLS  457 (681)
Q Consensus       392 ~~~-----~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~-----l~~L~~L~L~~n~l~  457 (681)
                      +..     .++|+.|++++|.+++.    ++..+..+++|+.|++++|.+++..+..+..     .++|++|++++|.++
T Consensus       304 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~  383 (461)
T 1z7x_W          304 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS  383 (461)
T ss_dssp             HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             HHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence            221     13445555555544433    2334445566667777766666543333321     556777777777776


Q ss_pred             C----cchhhhhcCCCCCEEEccCCcCcc
Q 005711          458 G----SLNDAITKWTNLKYFSIARNKLSG  482 (681)
Q Consensus       458 ~----~~~~~~~~l~~L~~L~L~~n~l~~  482 (681)
                      +    .++..+..+++|++|++++|++++
T Consensus       384 ~~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          384 DSSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             HHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             hhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence            4    556666667777777777777654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=3.7e-34  Score=311.44  Aligned_cols=252  Identities=19%  Similarity=0.113  Sum_probs=118.8

Q ss_pred             CccEEEccCCCCcCC----CcccccCCCCCCEEeccCCccccccccccC-----CCCCCCEEEccCCcCccc----cCcc
Q 005711          325 GLVLLDLSHNRFSGE----IPLKITELKSLQALFLSNNLLIGEIPARIG-----NLTYLQVIDLSHNMLSGS----IPLN  391 (681)
Q Consensus       325 ~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~Ls~n~l~~~----~p~~  391 (681)
                      +|++|++++|++++.    ++..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+++.    ++..
T Consensus       143 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  222 (461)
T 1z7x_W          143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI  222 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred             cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence            344444444444432    123333344555555555544433222221     133455555555544432    2333


Q ss_pred             cccCCCcceeecccccccccC-----ccccCCCCCccEEEcccCcceec----cccccCCCCCCcEEECCCCcCCCcchh
Q 005711          392 IVGCFQLLALIVNNNNLSGEI-----QPELDALDSLKILDISNNQISGE----IPLTLAGLKSLEIVDFSSNNLSGSLND  462 (681)
Q Consensus       392 ~~~~~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~~~  462 (681)
                      +..+++|++|++++|.+.+..     +..+..+++|+.|++++|.+++.    ++..+..+++|++|++++|.+++..+.
T Consensus       223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~  302 (461)
T 1z7x_W          223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR  302 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred             HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence            334444444444444443321     11122355666666666665543    344455566666666666665543333


Q ss_pred             hhhc-----CCCCCEEEccCCcCccc----CCcccccCCccceeecccCccccCCCCCcccccCCccccccCCccccc--
Q 005711          463 AITK-----WTNLKYFSIARNKLSGN----LPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQ--  531 (681)
Q Consensus       463 ~~~~-----l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~--  531 (681)
                      .+..     .++|++|++++|.+++.    ++..+..+++|+.|++++|++.+                 ..+..+..  
T Consensus       303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~-----------------~~~~~l~~~l  365 (461)
T 1z7x_W          303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED-----------------AGVRELCQGL  365 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH-----------------HHHHHHHHHH
T ss_pred             HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccc-----------------ccHHHHHHHH
Confidence            3222     24666666666665543    33444455555555555554432                 11111111  


Q ss_pred             ---ccccceeecCCCcCcc----cCCC-cCCCCCCCEEECCCCcCcccCCccc-----cCCCCCCeEecccCcce
Q 005711          532 ---LQGLEYLNLSFNFLDG----QVPG-LYRLRSLRALDLSHNSLTGQIPGNI-----SSLQELTLLNLSYNSFS  593 (681)
Q Consensus       532 ---l~~L~~L~Ls~N~l~~----~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l-----~~l~~L~~L~ls~N~l~  593 (681)
                         .++|++|+|++|++++    .+|. +..+++|+.|++++|++++.-...+     .....|+.|++.++.+.
T Consensus       366 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~  440 (461)
T 1z7x_W          366 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  440 (461)
T ss_dssp             TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             cCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence               4466666666666664    4444 5556666666666666654311111     11234555655555543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=5.9e-30  Score=265.30  Aligned_cols=290  Identities=20%  Similarity=0.252  Sum_probs=160.9

Q ss_pred             CCCEEEccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEE
Q 005711          250 SLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLL  329 (681)
Q Consensus       250 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L  329 (681)
                      +++.++++++.++ .+|..+.  +++++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+.   +|++|
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~---~L~~L  105 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV---KLERL  105 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT---TCCEE
T ss_pred             CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCC---CCCEE
Confidence            4666666666655 3444332  4566666666666655554566666666666666666555555555444   56666


Q ss_pred             EccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeeccccccc
Q 005711          330 DLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLS  409 (681)
Q Consensus       330 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~  409 (681)
                      ++++|.++ .+|..+.  ++|++|++++|.+++..+..+.++++|++|++++|.+..                      .
T Consensus       106 ~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~  160 (330)
T 1xku_A          106 YLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS----------------------S  160 (330)
T ss_dssp             ECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG----------------------G
T ss_pred             ECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc----------------------c
Confidence            66666655 3443332  455566666655555555555555555555555555532                      0


Q ss_pred             ccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccc
Q 005711          410 GEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLF  489 (681)
Q Consensus       410 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~  489 (681)
                      +..+..+..+++|+.|++++|.++. +|..+.  ++|++|++++|++++..+..+..+++|++|++++|.+++..+..+.
T Consensus       161 ~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  237 (330)
T 1xku_A          161 GIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA  237 (330)
T ss_dssp             GBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred             CcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc
Confidence            1233334444555555555555542 333222  4555555555555555555555555566666666655554444555


Q ss_pred             cCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cCC------CCCCCEEE
Q 005711          490 SFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYR------LRSLRALD  562 (681)
Q Consensus       490 ~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~------l~~L~~L~  562 (681)
                      .+++|+.|++++|++.                  .+|..+..+++|++|++++|++++..+. +..      ...|+.|+
T Consensus       238 ~l~~L~~L~L~~N~l~------------------~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~  299 (330)
T 1xku_A          238 NTPHLRELHLNNNKLV------------------KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS  299 (330)
T ss_dssp             GSTTCCEEECCSSCCS------------------SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEE
T ss_pred             CCCCCCEEECCCCcCc------------------cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceE
Confidence            5555555555555443                  4555666667777777777777654443 322      36677777


Q ss_pred             CCCCcCcc--cCCccccCCCCCCeEecccCc
Q 005711          563 LSHNSLTG--QIPGNISSLQELTLLNLSYNS  591 (681)
Q Consensus       563 Ls~N~l~~--~~p~~l~~l~~L~~L~ls~N~  591 (681)
                      +++|.+..  ..|..|..+..++.+++++|+
T Consensus       300 l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          300 LFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             eecCcccccccCccccccccceeEEEecccC
Confidence            77777753  455667777777888877774

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.3e-29  Score=262.76  Aligned_cols=295  Identities=20%  Similarity=0.210  Sum_probs=161.5

Q ss_pred             CCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEE
Q 005711          107 FLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLD  186 (681)
Q Consensus       107 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~  186 (681)
                      +++.++++++.++. +|..+.  +.|++|++++|++++..+..|.++++|++|++++|                      
T Consensus        32 ~l~~l~~~~~~l~~-lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n----------------------   86 (330)
T 1xku_A           32 HLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN----------------------   86 (330)
T ss_dssp             ETTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS----------------------
T ss_pred             CCeEEEecCCCccc-cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC----------------------
Confidence            56777887777763 454443  57777777777777665556666666666666665                      


Q ss_pred             ccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCcccc--C
Q 005711          187 FSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVG--G  264 (681)
Q Consensus       187 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~--~  264 (681)
                          .+++..|..+.++++|++|++++|.++......+.+|++|++++|.+++..+..+..+++|++|++++|.+..  .
T Consensus        87 ----~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  162 (330)
T 1xku_A           87 ----KISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI  162 (330)
T ss_dssp             ----CCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGB
T ss_pred             ----cCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCc
Confidence                3333334445555555555555555543333333445555555555555555566677777777777776642  4


Q ss_pred             CChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccc
Q 005711          265 IPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI  344 (681)
Q Consensus       265 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l  344 (681)
                      .+..+..+++|++|++++|.++. +|..+.  ++|++|++++|.+++..|..+..+.   +|+.|++++|.+++..+..+
T Consensus       163 ~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~---~L~~L~Ls~n~l~~~~~~~~  236 (330)
T 1xku_A          163 ENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLN---NLAKLGLSFNSISAVDNGSL  236 (330)
T ss_dssp             CTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCT---TCCEEECCSSCCCEECTTTG
T ss_pred             ChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCC---CCCEEECCCCcCceeChhhc
Confidence            55556666666666666666552 333221  4455555555555444444444333   45555555555544444444


Q ss_pred             cCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccE
Q 005711          345 TELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKI  424 (681)
Q Consensus       345 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  424 (681)
                      ..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..+....                  .......++.
T Consensus       237 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~------------------~~~~~~~l~~  297 (330)
T 1xku_A          237 ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG------------------YNTKKASYSG  297 (330)
T ss_dssp             GGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSS------------------CCTTSCCCSE
T ss_pred             cCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcc------------------cccccccccc
Confidence            44455555555555444 3444444445555555555554433222221100                  0012367788


Q ss_pred             EEcccCccee--ccccccCCCCCCcEEECCCCc
Q 005711          425 LDISNNQISG--EIPLTLAGLKSLEIVDFSSNN  455 (681)
Q Consensus       425 L~Ls~n~l~~--~~p~~~~~l~~L~~L~L~~n~  455 (681)
                      +++++|.+..  ..|..|..+.+++.+++++|+
T Consensus       298 l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          298 VSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             EECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             eEeecCcccccccCccccccccceeEEEecccC
Confidence            8888887753  456777888888888888874

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=6.5e-30  Score=265.15  Aligned_cols=288  Identities=19%  Similarity=0.203  Sum_probs=156.9

Q ss_pred             CCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEE
Q 005711          107 FLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLD  186 (681)
Q Consensus       107 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~  186 (681)
                      +++.++++++.++ .+|..+.  ++|++|++++|.+++..|..|.++++                          |++|+
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~--------------------------L~~L~   84 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQH--------------------------LYALV   84 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTT--------------------------CCEEE
T ss_pred             cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCC--------------------------CcEEE
Confidence            4555666555554 3343332  45555555555555444444555544                          45555


Q ss_pred             ccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCcccc--C
Q 005711          187 FSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVG--G  264 (681)
Q Consensus       187 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~--~  264 (681)
                      +++|.+++..|..++++++|++|++++|.++...+..+.+|++|++++|++++..+..+..+++|++|++++|.++.  .
T Consensus        85 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  164 (332)
T 2ft3_A           85 LVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF  164 (332)
T ss_dssp             CCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGS
T ss_pred             CCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCC
Confidence            55555555555666666666666666666654333333344555555555544444445555666666666665532  3


Q ss_pred             CChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccc
Q 005711          265 IPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI  344 (681)
Q Consensus       265 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l  344 (681)
                      .+..+..+ +|++|++++|.+++ +|..+.  +                           +|+.|++++|.+++..+..+
T Consensus       165 ~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~---------------------------~L~~L~l~~n~i~~~~~~~l  213 (332)
T 2ft3_A          165 EPGAFDGL-KLNYLRISEAKLTG-IPKDLP--E---------------------------TLNELHLDHNKIQAIELEDL  213 (332)
T ss_dssp             CTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--S---------------------------SCSCCBCCSSCCCCCCTTSS
T ss_pred             CcccccCC-ccCEEECcCCCCCc-cCcccc--C---------------------------CCCEEECCCCcCCccCHHHh
Confidence            34444444 45555555554442 222221  3                           45555555555554444455


Q ss_pred             cCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCC------
Q 005711          345 TELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDA------  418 (681)
Q Consensus       345 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~------  418 (681)
                      ..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+++..+..+..      
T Consensus       214 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~  292 (332)
T 2ft3_A          214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVK  292 (332)
T ss_dssp             TTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSS
T ss_pred             cCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccc
Confidence            55555555555555555544445555555555555555555 45555555555555555555555444443332      


Q ss_pred             CCCccEEEcccCcce--eccccccCCCCCCcEEECCCCc
Q 005711          419 LDSLKILDISNNQIS--GEIPLTLAGLKSLEIVDFSSNN  455 (681)
Q Consensus       419 l~~L~~L~Ls~n~l~--~~~p~~~~~l~~L~~L~L~~n~  455 (681)
                      ..+|+.|++++|.+.  +..|..|..+++|+.+++++|+
T Consensus       293 ~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          293 RAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             cccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            467888999998877  5667788888999999988875

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=4.9e-30  Score=266.06  Aligned_cols=288  Identities=22%  Similarity=0.248  Sum_probs=198.7

Q ss_pred             CCCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCc
Q 005711          205 SLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNH  284 (681)
Q Consensus       205 ~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  284 (681)
                      +++.++++++.++.......+++++|++++|.+++..+..+..+++|++|++++|++++..|..++.+++|++|++++|.
T Consensus        34 ~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  113 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH  113 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC
T ss_pred             cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc
Confidence            45555555555554333333455666666666665556667777777777777777776667777777777777777777


Q ss_pred             cccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCc--CCCcccccCCCCCCEEeccCCcccc
Q 005711          285 LNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFS--GEIPLKITELKSLQALFLSNNLLIG  362 (681)
Q Consensus       285 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~L~~n~l~~  362 (681)
                      ++ .+|..+.  ++|++|++++|.+++..+..+..+.   +|+.|++++|.++  +..|..+..+ +|++|++++|.+++
T Consensus       114 l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~---~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~  186 (332)
T 2ft3_A          114 LV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLR---NMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG  186 (332)
T ss_dssp             CC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCS---SCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred             CC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCc---cCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence            76 4444443  6777777777777755444455554   7777777777775  3556666666 77888888887764


Q ss_pred             ccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCC
Q 005711          363 EIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAG  442 (681)
Q Consensus       363 ~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~  442 (681)
                       +|..+.  ++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|+++ .+|..+..
T Consensus       187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~  262 (332)
T 2ft3_A          187 -IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD  262 (332)
T ss_dssp             -CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred             -cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence             444443  67778888888877776677777788888888888887777767777888888888888887 67777778


Q ss_pred             CCCCcEEECCCCcCCCcchhhhhc------CCCCCEEEccCCcCc--ccCCcccccCCccceeecccCc
Q 005711          443 LKSLEIVDFSSNNLSGSLNDAITK------WTNLKYFSIARNKLS--GNLPNWLFSFQAIQMMDFSTNK  503 (681)
Q Consensus       443 l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~ls~n~  503 (681)
                      +++|++|++++|++++..+..+..      .++|+.|++++|.+.  +..|..+..+++|+.+++++|+
T Consensus       263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            888888888888887665555543      356788888888876  4556667778888888887764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.97  E-value=5.6e-33  Score=312.12  Aligned_cols=409  Identities=17%  Similarity=0.156  Sum_probs=198.5

Q ss_pred             CCCCCCceeecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcC---Ccccccccc------------CCCCC
Q 005711           68 NCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAF---TGRISTCFG------------GLSGL  132 (681)
Q Consensus        68 ~cc~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l---~~~~~~~~~------------~l~~L  132 (681)
                      -|.+|.++.+.  ..+  .+.+... .....+..+..+++|++|+++++..   .+.+|..++            .+++|
T Consensus        40 vck~W~~~~~~--~~~--~l~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L  114 (592)
T 3ogk_B           40 VCRRWFKIDSE--TRE--HVTMALC-YTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQL  114 (592)
T ss_dssp             SCHHHHHHHHH--HCC--EEEESCG-GGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTC
T ss_pred             HhHHHHHhhhc--ccc--EEEEeec-cccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCC
Confidence            46678887543  111  2223221 1222233456778888888876532   122332222            56667


Q ss_pred             CEEEccCCCCCCcCCccccCC-C-CCCEeeCCCCCCCC-ccCCchhccccCCccEEEccCCcCccc----cCccccCCCC
Q 005711          133 KTLDLSYNKFVGVVPDAIMKL-R-NLRELILKGNPELG-GVFPGWVGNFSMNLEKLDFSFNSFCGE----IPESLYYLKS  205 (681)
Q Consensus       133 ~~L~Ls~n~l~~~~p~~~~~l-~-~L~~L~L~~n~~~~-~~~p~~l~~l~~~L~~L~L~~n~l~~~----~p~~l~~l~~  205 (681)
                      ++|+|++|.+++..+..+... + +|++|++++|.... ..++.....+ ++|++|++++|.+++.    ++.....+++
T Consensus       115 ~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~-~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~  193 (592)
T 3ogk_B          115 KSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHC-RKIKTLLMEESSFSEKDGKWLHELAQHNTS  193 (592)
T ss_dssp             CEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHC-TTCSEEECTTCEEECCCSHHHHHHHHHCCC
T ss_pred             CeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhC-CCCCEEECccccccCcchhHHHHHHhcCCC
Confidence            777777766665544444442 2 36666666553110 0111112233 4555555555544332    2222334444


Q ss_pred             CCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCcc
Q 005711          206 LKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHL  285 (681)
Q Consensus       206 L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  285 (681)
                      |++|++++|.+++...                 +.++..+.++++|++|++++|.+.+ +|..+..+++|++|+++.+..
T Consensus       194 L~~L~L~~n~~~~~~~-----------------~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~  255 (592)
T 3ogk_B          194 LEVLNFYMTEFAKISP-----------------KDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNE  255 (592)
T ss_dssp             CCEEECTTCCCSSCCH-----------------HHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCC
T ss_pred             ccEEEeeccCCCccCH-----------------HHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhccccccc
Confidence            4444444444331100                 2344555667777777777777664 556677777777777765322


Q ss_pred             c---cccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCc-ccccCCCCCCEEeccCCccc
Q 005711          286 N---YEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIP-LKITELKSLQALFLSNNLLI  361 (681)
Q Consensus       286 ~---~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~  361 (681)
                      .   +..+..+..+++|+.++++++.. +.+|..+..++   +|++|++++|.+++... ..+..+++|++|+++++...
T Consensus       256 ~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~---~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~  331 (592)
T 3ogk_B          256 DIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAA---QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGD  331 (592)
T ss_dssp             CTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGG---GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHH
T ss_pred             ccchHHHHHHhhccccccccCccccch-hHHHHHHhhcC---CCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCH
Confidence            2   22334455666677776665422 24444444444   56667776666554322 23456666777766633222


Q ss_pred             cccccccCCCCCCCEEEccC-----------CcCccccC-cccccCCCcceeecccccccccCccccCC-CCCccEEEcc
Q 005711          362 GEIPARIGNLTYLQVIDLSH-----------NMLSGSIP-LNIVGCFQLLALIVNNNNLSGEIQPELDA-LDSLKILDIS  428 (681)
Q Consensus       362 ~~~~~~l~~l~~L~~L~Ls~-----------n~l~~~~p-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls  428 (681)
                      +.++.....+++|++|++++           |.+++... .....+++|+.|++..|.+++..+..+.. +++|+.|+++
T Consensus       332 ~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~  411 (592)
T 3ogk_B          332 RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV  411 (592)
T ss_dssp             HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred             HHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEe
Confidence            22333334556666666662           34433211 11233555555555555555443333332 4555555554


Q ss_pred             ----cCcceec-----cccccCCCCCCcEEECCCCc--CCCcchhhhh-cCCCCCEEEccCCcCcc-cCCcccccCCccc
Q 005711          429 ----NNQISGE-----IPLTLAGLKSLEIVDFSSNN--LSGSLNDAIT-KWTNLKYFSIARNKLSG-NLPNWLFSFQAIQ  495 (681)
Q Consensus       429 ----~n~l~~~-----~p~~~~~l~~L~~L~L~~n~--l~~~~~~~~~-~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~  495 (681)
                          .|.+++.     ++..+.++++|++|+++.|.  +++.....+. .+++|++|++++|.+++ .++..+..+++|+
T Consensus       412 ~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~  491 (592)
T 3ogk_B          412 LLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQ  491 (592)
T ss_dssp             ECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCC
T ss_pred             ecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccC
Confidence                3344431     22223445555555554322  3333333332 24555555555555543 2233334444555


Q ss_pred             eeecccCcc
Q 005711          496 MMDFSTNKF  504 (681)
Q Consensus       496 ~L~ls~n~~  504 (681)
                      .|++++|.+
T Consensus       492 ~L~l~~n~l  500 (592)
T 3ogk_B          492 KLEMRGCCF  500 (592)
T ss_dssp             EEEEESCCC
T ss_pred             eeeccCCCC
Confidence            554444443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=2.6e-29  Score=263.02  Aligned_cols=285  Identities=21%  Similarity=0.211  Sum_probs=204.4

Q ss_pred             CCCCCCCCceeecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCc
Q 005711           66 GSNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGV  145 (681)
Q Consensus        66 ~~~cc~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  145 (681)
                      ...+|.|.++ |+          .+++.++ .+|..+.  ++|++|++++|.+++..+..|+++++|++|++++|++++.
T Consensus        26 ~~~~C~~~~~-c~----------~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~   91 (353)
T 2z80_A           26 ASLSCDRNGI-CK----------GSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI   91 (353)
T ss_dssp             -CCEECTTSE-EE----------CCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred             cCCCCCCCeE-ee----------CCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc
Confidence            3456788887 65          3445554 4555554  4899999999999987777899999999999999999988


Q ss_pred             CCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCCcCccccCc--cccCCCCCCEEEccCcc-CcccccC
Q 005711          146 VPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPE--SLYYLKSLKHLDLEKNN-LTGNVHD  222 (681)
Q Consensus       146 ~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n~-l~~~~~~  222 (681)
                      .|..|.++++|++|++++|+ +.+..+..+.++ ++|++|++++|.+++ +|.  .+.++++|++|++++|. +.+    
T Consensus        92 ~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l-~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~----  164 (353)
T 2z80_A           92 EEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPL-SSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTK----  164 (353)
T ss_dssp             CTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTC-TTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCE----
T ss_pred             CHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCC-ccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCccccc----
Confidence            88899999999999999994 444434447777 899999999999884 444  68888999999988874 433    


Q ss_pred             cCCcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEE
Q 005711          223 FYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLL  302 (681)
Q Consensus       223 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  302 (681)
                                       ..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.++...+..+..+++|+.|
T Consensus       165 -----------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  227 (353)
T 2z80_A          165 -----------------IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECL  227 (353)
T ss_dssp             -----------------ECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEE
T ss_pred             -----------------cCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEE
Confidence                             234455566667777777777776666777777777777777777653333334456777777


Q ss_pred             eccCCCccCCCChhhhhcccCCCccEEEccCCCCcC----CCcccccCCCCCCEEeccCCccccccccc-cCCCCCCCEE
Q 005711          303 DLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSG----EIPLKITELKSLQALFLSNNLLIGEIPAR-IGNLTYLQVI  377 (681)
Q Consensus       303 ~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L  377 (681)
                      ++++|.+++..+..+........++.++++++.+++    .+|..+..+++|++|++++|+++. +|.. +.++++|++|
T Consensus       228 ~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L  306 (353)
T 2z80_A          228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKI  306 (353)
T ss_dssp             EEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEE
T ss_pred             ECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEE
Confidence            777777776555544443344467777777777765    356677788888888888888874 4444 5788888888


Q ss_pred             EccCCcCccccC
Q 005711          378 DLSHNMLSGSIP  389 (681)
Q Consensus       378 ~Ls~n~l~~~~p  389 (681)
                      ++++|.+.+..|
T Consensus       307 ~L~~N~~~~~~~  318 (353)
T 2z80_A          307 WLHTNPWDCSCP  318 (353)
T ss_dssp             ECCSSCBCCCHH
T ss_pred             EeeCCCccCcCC
Confidence            888888776443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=2.3e-31  Score=299.00  Aligned_cols=347  Identities=14%  Similarity=0.067  Sum_probs=190.4

Q ss_pred             cccEEECCCCCCccc----cchhhccCCCCCEEEccCCcccc----CCChhhcccCcccEEecCCCccccccCccccCCC
Q 005711          226 SLLVLNLGSNRFSGT----LPCFAASAMSLTVLKLDNNSVVG----GIPTCIASLQALTHLNLSHNHLNYEISPRLVFFE  297 (681)
Q Consensus       226 ~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~  297 (681)
                      +|++|++++|.+++.    ++.....+++|++|++++|.+++    .++..+..+++|++|++++|.+.+ ++..+..++
T Consensus       165 ~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~  243 (592)
T 3ogk_B          165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAA  243 (592)
T ss_dssp             TCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCT
T ss_pred             CCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhh
Confidence            344444444444333    34445667778888887777762    334445567788888888877764 556677777


Q ss_pred             CCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccc-cccCCCCCCCE
Q 005711          298 KLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIP-ARIGNLTYLQV  376 (681)
Q Consensus       298 ~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~  376 (681)
                      +|++|+++........+.....+..+++|+.++++++.. +.+|..+..+++|++|++++|.+++... ..+..+++|++
T Consensus       244 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~  322 (592)
T 3ogk_B          244 NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEV  322 (592)
T ss_dssp             TCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCE
T ss_pred             HHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCE
Confidence            888887775332211112222233334677777776533 3566666667777777777777654433 33566777777


Q ss_pred             EEccCCcCccccCcccccCCCcceeeccc-----------ccccccC-ccccCCCCCccEEEcccCcceeccccccCC-C
Q 005711          377 IDLSHNMLSGSIPLNIVGCFQLLALIVNN-----------NNLSGEI-QPELDALDSLKILDISNNQISGEIPLTLAG-L  443 (681)
Q Consensus       377 L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~-----------n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~-l  443 (681)
                      |+++++...+.++.....+++|++|++++           +.+++.. +.....+++|+.|+++.|.+++..+..+.. +
T Consensus       323 L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~  402 (592)
T 3ogk_B          323 LETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYL  402 (592)
T ss_dssp             EEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHC
T ss_pred             EeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhC
Confidence            77773322223333334566677776662           3343321 111234566666666666666555544443 6


Q ss_pred             CCCcEEECC----CCcCCCc-----chhhhhcCCCCCEEEccCCc--CcccCCcccc-cCCccceeecccCccccCCCCC
Q 005711          444 KSLEIVDFS----SNNLSGS-----LNDAITKWTNLKYFSIARNK--LSGNLPNWLF-SFQAIQMMDFSTNKFMGFIPDA  511 (681)
Q Consensus       444 ~~L~~L~L~----~n~l~~~-----~~~~~~~l~~L~~L~L~~n~--l~~~~p~~~~-~l~~L~~L~ls~n~~~~~~p~~  511 (681)
                      ++|++|+++    .|.+++.     ++..+..+++|++|+++.|.  +++..+..+. .+++|+.|++++|++++.    
T Consensus       403 ~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~----  478 (592)
T 3ogk_B          403 KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDE----  478 (592)
T ss_dssp             CSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHH----
T ss_pred             CCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHH----
Confidence            666666664    4555542     33344556666666665332  4433333332 245555555555443321    


Q ss_pred             cccccCCccccccCCcccccccccceeecCCCcCccc-CCC-cCCCCCCCEEECCCCcCcccCCccc-cCCCCCCeEecc
Q 005711          512 VGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQ-VPG-LYRLRSLRALDLSHNSLTGQIPGNI-SSLQELTLLNLS  588 (681)
Q Consensus       512 ~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~-ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~ls  588 (681)
                                  .++..+..+++|++|+|++|.+++. ++. ...+++|+.|++++|++++.-...+ ..++.+....+.
T Consensus       479 ------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~  546 (592)
T 3ogk_B          479 ------------GLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIP  546 (592)
T ss_dssp             ------------HHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEEC
T ss_pred             ------------HHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEec
Confidence                        2334445667777777777776543 233 4456777777777777765533323 234555544444


Q ss_pred             cC
Q 005711          589 YN  590 (681)
Q Consensus       589 ~N  590 (681)
                      .+
T Consensus       547 ~~  548 (592)
T 3ogk_B          547 SR  548 (592)
T ss_dssp             CC
T ss_pred             Cc
Confidence            43

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=5.4e-29  Score=260.52  Aligned_cols=258  Identities=20%  Similarity=0.179  Sum_probs=142.2

Q ss_pred             CccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecc
Q 005711          325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVN  404 (681)
Q Consensus       325 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~  404 (681)
                      +|++|++++|++++..+..+..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|+++
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  132 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL  132 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence            45555555555543333344555555555555555554444445555555555555555543322234445555555555


Q ss_pred             cccccccCc-cccCCCCCccEEEcccC-cceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcc
Q 005711          405 NNNLSGEIQ-PELDALDSLKILDISNN-QISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSG  482 (681)
Q Consensus       405 ~n~l~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  482 (681)
                      +|.+.+..+ ..+..+++|+.|++++| .+.+..+..+.++++|++|++++|.+++..|..+..+++|++|++++|.+..
T Consensus       133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  212 (353)
T 2z80_A          133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL  212 (353)
T ss_dssp             TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred             CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence            555543222 24455555555555555 2444444455555555555555555555555555555555555555555542


Q ss_pred             cCCcccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcc----cCCC-cCCCCC
Q 005711          483 NLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDG----QVPG-LYRLRS  557 (681)
Q Consensus       483 ~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~----~ip~-~~~l~~  557 (681)
                      ..+..+..+++|+.|++++|++++..+..             + ........++.++++++.+++    .+|. +..+++
T Consensus       213 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-------------l-~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~  278 (353)
T 2z80_A          213 LLEIFVDVTSSVECLELRDTDLDTFHFSE-------------L-STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISG  278 (353)
T ss_dssp             HHHHHHHHTTTEEEEEEESCBCTTCCCC--------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTT
T ss_pred             chhhhhhhcccccEEECCCCccccccccc-------------c-ccccccchhhccccccccccCcchhhhHHHHhcccC
Confidence            22222233555555555555554322110             0 011223456666666666654    3555 778889


Q ss_pred             CCEEECCCCcCcccCCcc-ccCCCCCCeEecccCcceeeCC
Q 005711          558 LRALDLSHNSLTGQIPGN-ISSLQELTLLNLSYNSFSGFVP  597 (681)
Q Consensus       558 L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~~~~p  597 (681)
                      |+.|++++|+++ .+|.. |..+++|++|++++|++.|.+|
T Consensus       279 L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          279 LLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            999999999998 55555 5888999999999999998876

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=6.6e-28  Score=247.04  Aligned_cols=249  Identities=22%  Similarity=0.256  Sum_probs=173.4

Q ss_pred             EEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCcc--ccCcccccCCCcceeeccc
Q 005711          328 LLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSG--SIPLNIVGCFQLLALIVNN  405 (681)
Q Consensus       328 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~p~~~~~~~~L~~L~l~~  405 (681)
                      .++++++.++ .+|..+.  ++|++|++++|.++...+..|.++++|++|++++|.++.  ..+..+..+++|++|++++
T Consensus        11 ~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~   87 (306)
T 2z66_A           11 EIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF   87 (306)
T ss_dssp             EEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred             EEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence            4555555554 3443332  455666666666553333335556666666666665542  2244445556666666666


Q ss_pred             ccccccCccccCCCCCccEEEcccCcceeccc-cccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcc-c
Q 005711          406 NNLSGEIQPELDALDSLKILDISNNQISGEIP-LTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSG-N  483 (681)
Q Consensus       406 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~  483 (681)
                      |.+.+ ++..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ .
T Consensus        88 n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  166 (306)
T 2z66_A           88 NGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF  166 (306)
T ss_dssp             CSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred             Ccccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence            65553 34446667777777777777775544 467777778888888877777777777777788888888887775 4


Q ss_pred             CCcccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCCCCCCEEE
Q 005711          484 LPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALD  562 (681)
Q Consensus       484 ~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~  562 (681)
                      +|..+..+++|+.|++++|++.                 +..|..+..+++|++|+|++|++++..+. +..+++|+.|+
T Consensus       167 ~~~~~~~l~~L~~L~Ls~n~l~-----------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  229 (306)
T 2z66_A          167 LPDIFTELRNLTFLDLSQCQLE-----------------QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD  229 (306)
T ss_dssp             ECSCCTTCTTCCEEECTTSCCC-----------------EECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEE
T ss_pred             chhHHhhCcCCCEEECCCCCcC-----------------CcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeE
Confidence            6677777777777766666554                 34567778888999999999999876665 88899999999


Q ss_pred             CCCCcCcccCCccccCCC-CCCeEecccCcceeeCC
Q 005711          563 LSHNSLTGQIPGNISSLQ-ELTLLNLSYNSFSGFVP  597 (681)
Q Consensus       563 Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~~~~p  597 (681)
                      +++|++++..|..+..++ +|++|++++|++.|.++
T Consensus       230 L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          230 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             CTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred             CCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence            999999999999998884 89999999999998765

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=4.9e-27  Score=254.16  Aligned_cols=251  Identities=21%  Similarity=0.205  Sum_probs=184.0

Q ss_pred             ccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeeccc
Q 005711          326 LVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNN  405 (681)
Q Consensus       326 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~  405 (681)
                      ...++.++..++ .+|..+.  +++++|+|++|.+++..+..|.++++|++|++++|.+++..+..+.++++|++|++++
T Consensus        56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            344555555555 3454333  4666666666666666666666666666666666666666666666666666666666


Q ss_pred             ccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcch-hhhhcCCCCCEEEccCCcCcccC
Q 005711          406 NNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLN-DAITKWTNLKYFSIARNKLSGNL  484 (681)
Q Consensus       406 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~  484 (681)
                      |.+++..+..+..+++|+.|++++|.+++..+..|.++++|++|++++|+..+.++ ..+..+++|++|++++|.+++ +
T Consensus       133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~  211 (452)
T 3zyi_A          133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-M  211 (452)
T ss_dssp             SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-C
T ss_pred             CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-c
Confidence            66666555667777888888888888876666677888888888888854443443 457778888888888888874 3


Q ss_pred             CcccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCCCCCCEEEC
Q 005711          485 PNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDL  563 (681)
Q Consensus       485 p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~L  563 (681)
                      | .+..+++|+.|++++|++                 ++..|..+.++++|+.|+|++|++++..|. +..+++|+.|+|
T Consensus       212 ~-~~~~l~~L~~L~Ls~N~l-----------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  273 (452)
T 3zyi_A          212 P-NLTPLVGLEELEMSGNHF-----------------PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNL  273 (452)
T ss_dssp             C-CCTTCTTCCEEECTTSCC-----------------SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             c-cccccccccEEECcCCcC-----------------cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEEC
Confidence            3 355566666665555544                 446678888999999999999999988887 888999999999


Q ss_pred             CCCcCcccCCccccCCCCCCeEecccCcceeeCCC
Q 005711          564 SHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPW  598 (681)
Q Consensus       564 s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  598 (681)
                      ++|++++..+..+..+++|+.|++++|++.|.+..
T Consensus       274 ~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~  308 (452)
T 3zyi_A          274 AHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI  308 (452)
T ss_dssp             CSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred             CCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence            99999988888889999999999999999988763

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=6e-27  Score=252.55  Aligned_cols=251  Identities=21%  Similarity=0.214  Sum_probs=184.3

Q ss_pred             ccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeeccc
Q 005711          326 LVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNN  405 (681)
Q Consensus       326 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~  405 (681)
                      ...++.++..++ .+|..+.  ++++.|+|++|++++..+..|.++++|++|++++|.+++..+..|.++++|++|++++
T Consensus        45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            345555555555 4554443  4566666666666665556666666666666666666655556666666666666666


Q ss_pred             ccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcc-hhhhhcCCCCCEEEccCCcCcccC
Q 005711          406 NNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSL-NDAITKWTNLKYFSIARNKLSGNL  484 (681)
Q Consensus       406 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~  484 (681)
                      |.+++..+..+..+++|+.|++++|.+++..+..|.++++|++|++++|+..+.+ +..+..+++|++|++++|.++ .+
T Consensus       122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~  200 (440)
T 3zyj_A          122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EI  200 (440)
T ss_dssp             SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SC
T ss_pred             CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cc
Confidence            6666555556777788888888888887666667788888888888885444344 346778888888888888887 44


Q ss_pred             CcccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCCCCCCEEEC
Q 005711          485 PNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDL  563 (681)
Q Consensus       485 p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~L  563 (681)
                      | .+..+++|+.|++++|++                 ++..|..+.++++|+.|+|++|++++..+. +.++++|+.|+|
T Consensus       201 ~-~~~~l~~L~~L~Ls~N~l-----------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  262 (440)
T 3zyj_A          201 P-NLTPLIKLDELDLSGNHL-----------------SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINL  262 (440)
T ss_dssp             C-CCTTCSSCCEEECTTSCC-----------------CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEEC
T ss_pred             c-ccCCCcccCEEECCCCcc-----------------CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEEC
Confidence            4 355666666666555544                 445677888999999999999999988887 889999999999


Q ss_pred             CCCcCcccCCccccCCCCCCeEecccCcceeeCCC
Q 005711          564 SHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPW  598 (681)
Q Consensus       564 s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  598 (681)
                      ++|++++..+..+..+++|+.|++++|++.|.+..
T Consensus       263 ~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l  297 (440)
T 3zyj_A          263 AHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI  297 (440)
T ss_dssp             TTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred             CCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence            99999988888889999999999999999988753

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=2.4e-27  Score=242.92  Aligned_cols=247  Identities=23%  Similarity=0.231  Sum_probs=164.3

Q ss_pred             EEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCcccc--CCChhhcccCcccEEecCCCccc
Q 005711          209 LDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVG--GIPTCIASLQALTHLNLSHNHLN  286 (681)
Q Consensus       209 L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~  286 (681)
                      ++++++.++........++++|++++|+++...+..+..+++|++|++++|.++.  ..+..+..+++|++|++++|.++
T Consensus        12 l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~   91 (306)
T 2z66_A           12 IRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI   91 (306)
T ss_dssp             EECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE
T ss_pred             EEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc
Confidence            3444444433333333345555555555553333446677777888887777763  23556667778888888888776


Q ss_pred             cccCccccCCCCCcEEeccCCCccCCCC-hhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCcccc-cc
Q 005711          287 YEISPRLVFFEKLLLLDLSFNDLSGPLP-SKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIG-EI  364 (681)
Q Consensus       287 ~~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~  364 (681)
                       .+|..+..+++|++|++++|.+++..+ ..+..+.   +|++|++++|.+++..+..+..+++|++|++++|.+++ ..
T Consensus        92 -~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~---~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  167 (306)
T 2z66_A           92 -TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR---NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL  167 (306)
T ss_dssp             -EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCT---TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred             -cChhhcCCCCCCCEEECCCCcccccccchhhhhcc---CCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc
Confidence             455667777788888888877775433 3344443   77777777777777777777777777888887777765 46


Q ss_pred             ccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCC
Q 005711          365 PARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLK  444 (681)
Q Consensus       365 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  444 (681)
                      |..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..|..+..++
T Consensus       168 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~  247 (306)
T 2z66_A          168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP  247 (306)
T ss_dssp             CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCC
T ss_pred             hhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhh
Confidence            66777777777777777777776666676777777777777777666555666677777777777777766666666663


Q ss_pred             -CCcEEECCCCcCCCc
Q 005711          445 -SLEIVDFSSNNLSGS  459 (681)
Q Consensus       445 -~L~~L~L~~n~l~~~  459 (681)
                       +|++|++++|++++.
T Consensus       248 ~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          248 SSLAFLNLTQNDFACT  263 (306)
T ss_dssp             TTCCEEECTTCCEECS
T ss_pred             ccCCEEEccCCCeecc
Confidence             677777777776643

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=1.9e-27  Score=245.48  Aligned_cols=232  Identities=21%  Similarity=0.239  Sum_probs=172.2

Q ss_pred             CccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecc
Q 005711          325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVN  404 (681)
Q Consensus       325 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~  404 (681)
                      .++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..++++++|++|++++|.++ .+|..+..+++|+.|+++
T Consensus        82 ~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~  158 (328)
T 4fcg_A           82 GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR  158 (328)
T ss_dssp             TCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred             ceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence            6777888888777 66767777777778888777777 67777777777777777777777 566666666666666666


Q ss_pred             cccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccC
Q 005711          405 NNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNL  484 (681)
Q Consensus       405 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  484 (681)
                      +|++.+.+|..+..      .         ..+..+.++++|++|++++|+++ .+|..+..+++|++|++++|.+++ +
T Consensus       159 ~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l  221 (328)
T 4fcg_A          159 ACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-L  221 (328)
T ss_dssp             EETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-C
T ss_pred             CCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-C
Confidence            66666666554332      0         01122344777777777777777 666777777777777777777774 5


Q ss_pred             CcccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCCCCCCEEEC
Q 005711          485 PNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDL  563 (681)
Q Consensus       485 p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~L  563 (681)
                      |..+..+++|+.|++++|++.+                 .+|..++.+++|++|+|++|++.+.+|. +.++++|+.|++
T Consensus       222 ~~~l~~l~~L~~L~Ls~n~~~~-----------------~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L  284 (328)
T 4fcg_A          222 GPAIHHLPKLEELDLRGCTALR-----------------NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL  284 (328)
T ss_dssp             CGGGGGCTTCCEEECTTCTTCC-----------------BCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEEC
T ss_pred             chhhccCCCCCEEECcCCcchh-----------------hhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeC
Confidence            5567777777777666665543                 6677788888999999999988888887 888999999999


Q ss_pred             CCCcCcccCCccccCCCCCCeEecccCcce
Q 005711          564 SHNSLTGQIPGNISSLQELTLLNLSYNSFS  593 (681)
Q Consensus       564 s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  593 (681)
                      ++|++.+.+|..+..+++|+.+++..|.+.
T Consensus       285 ~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          285 RGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             TTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             CCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            999999999999999999999998877654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=2.9e-28  Score=250.16  Aligned_cols=249  Identities=22%  Similarity=0.214  Sum_probs=151.3

Q ss_pred             ccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCc-CCCccccc-------CCCCCCEEeccCCcccccc
Q 005711          293 LVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFS-GEIPLKIT-------ELKSLQALFLSNNLLIGEI  364 (681)
Q Consensus       293 l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~-~~~p~~l~-------~l~~L~~L~L~~n~l~~~~  364 (681)
                      ++..++|+.+++++|.+  .+|..+..     .|+.|++++|.++ +.+|..+.       .+++|++|++++|.+++.+
T Consensus        39 ~~~~~~L~~l~l~~n~l--~~p~~~~~-----~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  111 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE--ADLGQFTD-----IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTA  111 (312)
T ss_dssp             EEEEEECTTHHHHCCTT--CCCHHHHH-----HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCC
T ss_pred             EccCCCceeEeeccccc--ccHHHHHH-----HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchh
Confidence            34456677777777777  66766554     3777778888773 44555544       6788888888888888888


Q ss_pred             cccc--CCCCCCCEEEccCCcCccccCcccccC-----CCcceeecccccccccCccccCCCCCccEEEcccCcceec--
Q 005711          365 PARI--GNLTYLQVIDLSHNMLSGSIPLNIVGC-----FQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGE--  435 (681)
Q Consensus       365 ~~~l--~~l~~L~~L~Ls~n~l~~~~p~~~~~~-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--  435 (681)
                      |..+  ..+++|++|++++|.+++. |..+..+     ++|++|++++|.+.+..+..+..+++|+.|++++|++.+.  
T Consensus       112 ~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  190 (312)
T 1wwl_A          112 PPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG  190 (312)
T ss_dssp             CCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH
T ss_pred             HHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH
Confidence            8776  7888888888888888876 6666554     5666666666666655555666666666666666665543  


Q ss_pred             ccccc--CCCCCCcEEECCCCcCCC--cch-hhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccccCCCC
Q 005711          436 IPLTL--AGLKSLEIVDFSSNNLSG--SLN-DAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPD  510 (681)
Q Consensus       436 ~p~~~--~~l~~L~~L~L~~n~l~~--~~~-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~  510 (681)
                      .+..+  ..+++|++|++++|++++  .++ ..+..+++|++|++++|++++..|.                        
T Consensus       191 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~------------------------  246 (312)
T 1wwl_A          191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA------------------------  246 (312)
T ss_dssp             HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC------------------------
T ss_pred             HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch------------------------
Confidence            22223  556666666666666652  112 2234455666666666555543321                        


Q ss_pred             CcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCCCCCeEeccc
Q 005711          511 AVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSY  589 (681)
Q Consensus       511 ~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  589 (681)
                                      ..+..+++|++|+|++|+++ .+|. +.  ++|+.||+++|++++. |. +..+++|++|++++
T Consensus       247 ----------------~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~  305 (312)
T 1wwl_A          247 ----------------PSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKG  305 (312)
T ss_dssp             ----------------SCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTT
T ss_pred             ----------------hhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccC
Confidence                            12223445555555555555 3444 33  5555555555555544 43 55555555566666


Q ss_pred             Cccee
Q 005711          590 NSFSG  594 (681)
Q Consensus       590 N~l~~  594 (681)
                      |++++
T Consensus       306 N~l~~  310 (312)
T 1wwl_A          306 NPFLD  310 (312)
T ss_dssp             CTTTC
T ss_pred             CCCCC
Confidence            55543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=1.9e-27  Score=240.97  Aligned_cols=233  Identities=20%  Similarity=0.188  Sum_probs=139.2

Q ss_pred             CCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeeccccc-ccccCccccCCCCCccEEEc
Q 005711          349 SLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNN-LSGEIQPELDALDSLKILDI  427 (681)
Q Consensus       349 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L  427 (681)
                      +|++|++++|.+++..+..+.++++|++|++++|.+++..|..+..+++|++|++++|. +....+..+..+++|+.|++
T Consensus        33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l  112 (285)
T 1ozn_A           33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (285)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence            44444444444444444444444455555555554444444444444555555555554 33333445556666666666


Q ss_pred             ccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccccC
Q 005711          428 SNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGF  507 (681)
Q Consensus       428 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~  507 (681)
                      ++|.+++..|..+.++++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.+ 
T Consensus       113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-  191 (285)
T 1ozn_A          113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH-  191 (285)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-
T ss_pred             CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc-
Confidence            6666665556666666666666666666665555556666666666666666665444456666666666655554432 


Q ss_pred             CCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCCCCCeEe
Q 005711          508 IPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLN  586 (681)
Q Consensus       508 ~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  586 (681)
                                      ..|..+.++++|++|++++|++++..+. +..+++|+.|++++|.+.+..+.. .-...++.+.
T Consensus       192 ----------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~  254 (285)
T 1ozn_A          192 ----------------VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFR  254 (285)
T ss_dssp             ----------------ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCC
T ss_pred             ----------------cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcc
Confidence                            4466677777888888888888765555 777888888888888877654421 1123345555


Q ss_pred             cccCcceeeCCCC
Q 005711          587 LSYNSFSGFVPWK  599 (681)
Q Consensus       587 ls~N~l~~~~p~~  599 (681)
                      .+.+.+.|..|..
T Consensus       255 ~~~~~~~c~~p~~  267 (285)
T 1ozn_A          255 GSSSEVPCSLPQR  267 (285)
T ss_dssp             SEECCCBEEESGG
T ss_pred             cccCccccCCchH
Confidence            6777888877753

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=1.2e-26  Score=257.61  Aligned_cols=288  Identities=24%  Similarity=0.272  Sum_probs=206.1

Q ss_pred             CCCC-CCCCCCCCCceee------cCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCC
Q 005711           61 LSSW-VGSNCTNWTGVAC------NFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLK  133 (681)
Q Consensus        61 ~~~w-~~~~cc~w~gv~c------~~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  133 (681)
                      .+.| ...+||.|+|..|      ......++.|+++++.++ .+|..+.  ++|++|++++|.+++ +|.   .+++|+
T Consensus        12 w~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~   84 (622)
T 3g06_A           12 WSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELR   84 (622)
T ss_dssp             HHHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCC
T ss_pred             HHHHHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCC
Confidence            3456 4578899976432      112235888999999988 6777666  799999999999984 555   578999


Q ss_pred             EEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCCcCccccCccccCCCCCCEEEccC
Q 005711          134 TLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEK  213 (681)
Q Consensus       134 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  213 (681)
                      +|+|++|+++ .+|.   .+++|++|++++|++ . .+|.   .+ ++|++|++++|.+++ +|..   +++|++|++++
T Consensus        85 ~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l-~-~l~~---~l-~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~  150 (622)
T 3g06_A           85 TLEVSGNQLT-SLPV---LPPGLLELSIFSNPL-T-HLPA---LP-SGLCKLWIFGNQLTS-LPVL---PPGLQELSVSD  150 (622)
T ss_dssp             EEEECSCCCS-CCCC---CCTTCCEEEECSCCC-C-CCCC---CC-TTCCEEECCSSCCSC-CCCC---CTTCCEEECCS
T ss_pred             EEEcCCCcCC-cCCC---CCCCCCEEECcCCcC-C-CCCC---CC-CCcCEEECCCCCCCc-CCCC---CCCCCEEECcC
Confidence            9999999998 4665   678999999999954 2 2444   33 789999999999884 6654   48899999999


Q ss_pred             ccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCccccccCccc
Q 005711          214 NNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRL  293 (681)
Q Consensus       214 n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l  293 (681)
                      |.+++. |..+.+|+.|++++|.+++ +|   ..+++|+.|++++|.+++ +|..   +++|+.|++++|.++ .+|.  
T Consensus       151 N~l~~l-~~~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~--  218 (622)
T 3g06_A          151 NQLASL-PALPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPA--  218 (622)
T ss_dssp             SCCSCC-CCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCC--
T ss_pred             CcCCCc-CCccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCC--
Confidence            988864 4456778888888888875 44   446778888888888774 4432   467778888888776 3333  


Q ss_pred             cCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCC
Q 005711          294 VFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTY  373 (681)
Q Consensus       294 ~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  373 (681)
                       .+++|+.|++++|.+++ +|.   .   .++|+.|++++|+++ .+|.   .+++|+.|++++|+++ .+|..+.++++
T Consensus       219 -~~~~L~~L~Ls~N~L~~-lp~---~---l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~  285 (622)
T 3g06_A          219 -LPSGLKELIVSGNRLTS-LPV---L---PSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSS  285 (622)
T ss_dssp             -CCTTCCEEECCSSCCSC-CCC---C---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCT
T ss_pred             -CCCCCCEEEccCCccCc-CCC---C---CCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccc
Confidence             24677777777777764 441   1   126777777777777 4554   4567777777777777 55666777777


Q ss_pred             CCEEEccCCcCccccCccccc
Q 005711          374 LQVIDLSHNMLSGSIPLNIVG  394 (681)
Q Consensus       374 L~~L~Ls~n~l~~~~p~~~~~  394 (681)
                      |+.|++++|.+++..|..+..
T Consensus       286 L~~L~L~~N~l~~~~~~~l~~  306 (622)
T 3g06_A          286 ETTVNLEGNPLSERTLQALRE  306 (622)
T ss_dssp             TCEEECCSCCCCHHHHHHHHH
T ss_pred             cCEEEecCCCCCCcCHHHHHh
Confidence            777777777777766665543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=3.4e-26  Score=231.69  Aligned_cols=225  Identities=22%  Similarity=0.195  Sum_probs=163.4

Q ss_pred             CEEEccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEc
Q 005711          252 TVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDL  331 (681)
Q Consensus       252 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~L  331 (681)
                      ++++.+++.++ .+|..+  .++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+.   +|++|++
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~---~L~~L~l   87 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA---LLEQLDL   87 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT---TCCEEEC
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCcc---CCCEEeC
Confidence            57777777776 355433  46788888888888876667778888888888888888766666666655   7888888


Q ss_pred             cCCC-CcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccc
Q 005711          332 SHNR-FSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSG  410 (681)
Q Consensus       332 s~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~  410 (681)
                      ++|. +++..|..+..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|+.|++++|.+++
T Consensus        88 ~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  167 (285)
T 1ozn_A           88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS  167 (285)
T ss_dssp             CSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred             CCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc
Confidence            8886 665557777777888888888888777767777777888888888887776555556667777777777777766


Q ss_pred             cCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcc
Q 005711          411 EIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSG  482 (681)
Q Consensus       411 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  482 (681)
                      ..+..+..+++|+.|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|++++|.+..
T Consensus       168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence            555556667777777777777776666677777777777777777776655666667777777777776654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=7.6e-28  Score=247.62  Aligned_cols=242  Identities=20%  Similarity=0.220  Sum_probs=162.6

Q ss_pred             CccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecc
Q 005711          325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVN  404 (681)
Q Consensus       325 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~  404 (681)
                      +|+.|++++|++++..|..+..+++|++|++++|.+++..+  +..+++|++|++++|.+++..     ..++|+.|+++
T Consensus        35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~  107 (317)
T 3o53_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA  107 (317)
T ss_dssp             GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred             CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEECC
Confidence            56666666666665555566666666666666666655443  566666666666666665322     22566666666


Q ss_pred             cccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhh-hcCCCCCEEEccCCcCccc
Q 005711          405 NNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAI-TKWTNLKYFSIARNKLSGN  483 (681)
Q Consensus       405 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~  483 (681)
                      +|.+.+..+.   .+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++.
T Consensus       108 ~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~  184 (317)
T 3o53_A          108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV  184 (317)
T ss_dssp             SSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred             CCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc
Confidence            6666554433   24667888888888877667677777888888888888876666655 3677888888888877643


Q ss_pred             CCcccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCCCCCCEEE
Q 005711          484 LPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALD  562 (681)
Q Consensus       484 ~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~  562 (681)
                       +. ...+++|+.|++++|+++                  .+|..+..+++|++|+|++|++++ +|. +..+++|+.|+
T Consensus       185 -~~-~~~l~~L~~L~Ls~N~l~------------------~l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~  243 (317)
T 3o53_A          185 -KG-QVVFAKLKTLDLSSNKLA------------------FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFD  243 (317)
T ss_dssp             -EC-CCCCTTCCEEECCSSCCC------------------EECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEE
T ss_pred             -cc-ccccccCCEEECCCCcCC------------------cchhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEE
Confidence             22 223556666555555544                  445557788888888888888884 455 77788888888


Q ss_pred             CCCCcCc-ccCCccccCCCCCCeEecccC-cceeeCC
Q 005711          563 LSHNSLT-GQIPGNISSLQELTLLNLSYN-SFSGFVP  597 (681)
Q Consensus       563 Ls~N~l~-~~~p~~l~~l~~L~~L~ls~N-~l~~~~p  597 (681)
                      +++|.++ +.+|..+..++.|+.+++++| .+.|..|
T Consensus       244 l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~  280 (317)
T 3o53_A          244 LRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE  280 (317)
T ss_dssp             CTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred             ccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence            8888888 777777888888888888844 4555443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=4e-28  Score=249.13  Aligned_cols=248  Identities=21%  Similarity=0.235  Sum_probs=145.5

Q ss_pred             CccEEEccCCCCcCCCcccccCCCCCCEEeccCCcc-ccccccccC-------CCCCCCEEEccCCcCccccCccc--cc
Q 005711          325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLL-IGEIPARIG-------NLTYLQVIDLSHNMLSGSIPLNI--VG  394 (681)
Q Consensus       325 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l-~~~~~~~l~-------~l~~L~~L~Ls~n~l~~~~p~~~--~~  394 (681)
                      +|+.+++++|.+  .+|..+...  |+.|++++|.+ .+.+|..+.       ++++|++|++++|.+++.+|..+  ..
T Consensus        44 ~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  119 (312)
T 1wwl_A           44 SLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT  119 (312)
T ss_dssp             ECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred             CceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence            466666666666  455544432  66666666666 333444333       45666666666666665555544  44


Q ss_pred             CCCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEE
Q 005711          395 CFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFS  474 (681)
Q Consensus       395 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  474 (681)
                      +++|++|++++|.+++. |..+..+.                   ...+++|++|++++|++++..+..+..+++|++|+
T Consensus       120 l~~L~~L~Ls~N~l~~~-~~~~~~l~-------------------~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  179 (312)
T 1wwl_A          120 GPDLNILNLRNVSWATR-DAWLAELQ-------------------QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLD  179 (312)
T ss_dssp             SCCCSEEEEESCBCSSS-SSHHHHHH-------------------TTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEE
T ss_pred             CCCccEEEccCCCCcch-hHHHHHHH-------------------HhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEE
Confidence            55555555555555444 33333330                   00014444444444444444444444445555555


Q ss_pred             ccCCcCccc--CCccc--ccCCccceeecccCccccCCCCCcccccCCccccccCC-cccccccccceeecCCCcCcccC
Q 005711          475 IARNKLSGN--LPNWL--FSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIP-KGLFQLQGLEYLNLSFNFLDGQV  549 (681)
Q Consensus       475 L~~n~l~~~--~p~~~--~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip-~~l~~l~~L~~L~Ls~N~l~~~i  549 (681)
                      +++|++.+.  .|..+  ..+++|+.|++++|++.+.               +.++ ..+.++++|++|++++|++++.+
T Consensus       180 Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~---------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  244 (312)
T 1wwl_A          180 LSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP---------------SGVCSALAAARVQLQGLDLSHNSLRDAA  244 (312)
T ss_dssp             CCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCH---------------HHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred             CCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcch---------------HHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence            555544432  12222  4455555555555544310               0122 22346789999999999999877


Q ss_pred             CC--cCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccCcceeeCCCCCCCCCccc-cccCCCCC
Q 005711          550 PG--LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPG-AFAGNPNL  615 (681)
Q Consensus       550 p~--~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~-~~~gn~~l  615 (681)
                      |.  +..+++|+.|++++|+++ .+|..+.  ++|++||+++|++++. |....+..+.. .+.+|+..
T Consensus       245 ~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          245 GAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             CCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTT
T ss_pred             chhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCC
Confidence            53  667899999999999999 7888776  8999999999999987 55334444444 77888643

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.94  E-value=1.3e-29  Score=284.87  Aligned_cols=460  Identities=13%  Similarity=0.091  Sum_probs=233.5

Q ss_pred             CCCCCCceeecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCcc---cc------------ccccCCCCC
Q 005711           68 NCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGR---IS------------TCFGGLSGL  132 (681)
Q Consensus        68 ~cc~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~---~~------------~~~~~l~~L  132 (681)
                      -|.+|.++...    ..+++++...... .....+..+++|++|+++++.....   .|            .....+++|
T Consensus        33 vck~W~~~~~~----~~~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L  107 (594)
T 2p1m_B           33 VCKSWYEIERW----CRRKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWL  107 (594)
T ss_dssp             SCHHHHHHHHH----HCCEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTC
T ss_pred             HHHHHHHhhhh----hceEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCC
Confidence            46678776221    2334555543321 1122456778899999988753211   11            223467788


Q ss_pred             CEEEccCCCCCCcCCcccc-CCCCCCEeeCCCCCCCCcc-CCchhccccCCccEEEccCCcCccccCcccc----CCCCC
Q 005711          133 KTLDLSYNKFVGVVPDAIM-KLRNLRELILKGNPELGGV-FPGWVGNFSMNLEKLDFSFNSFCGEIPESLY----YLKSL  206 (681)
Q Consensus       133 ~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~~~~~~-~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~----~l~~L  206 (681)
                      ++|+|++|.+++..+..+. .+++|++|++++|..++.. ++....++ ++|++|++++|.+++..+..+.    .+++|
T Consensus       108 ~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~-~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L  186 (594)
T 2p1m_B          108 EEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATC-RNLKELDLRESDVDDVSGHWLSHFPDTYTSL  186 (594)
T ss_dssp             CEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHC-TTCCEEECTTCEEECCCGGGGGGSCTTCCCC
T ss_pred             CeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhC-CCCCEEeCcCCccCCcchHHHHHHhhcCCcC
Confidence            8888888887766666664 5778888888777322221 33333355 6777777777776544333332    45566


Q ss_pred             CEEEccCccCcccccCcCCcccEEECCCCCCcc-ccchhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCc-
Q 005711          207 KHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSG-TLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNH-  284 (681)
Q Consensus       207 ~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-  284 (681)
                      ++|++++|. ..                  ++. .++.....+++|++|++++|...+.++..+..+++|++|+++.+. 
T Consensus       187 ~~L~l~~~~-~~------------------~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~  247 (594)
T 2p1m_B          187 VSLNISCLA-SE------------------VSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTA  247 (594)
T ss_dssp             CEEECTTCC-SC------------------CCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCC
T ss_pred             cEEEecccC-Cc------------------CCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccC
Confidence            666666654 10                  110 122223445666666666662222355556666666666644432 


Q ss_pred             ------cccccCccccCCCCCcEE-eccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCC-cccccCCCCCCEEecc
Q 005711          285 ------LNYEISPRLVFFEKLLLL-DLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEI-PLKITELKSLQALFLS  356 (681)
Q Consensus       285 ------l~~~~~~~l~~l~~L~~L-~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~  356 (681)
                            +.+ ++..+..+++|+.+ .+..... +.++..+..+.   +|+.|++++|.+++.. +..+..+++|++|+++
T Consensus       248 ~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~---~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~  322 (594)
T 2p1m_B          248 EVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCS---RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVL  322 (594)
T ss_dssp             CCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHT---TCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred             ccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhC---CCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCc
Confidence                  222 33355667777766 3332221 22333333333   6777777777765432 2224566777777777


Q ss_pred             CCccccc-cccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCcccc-CCCCCccEEEcccCccee
Q 005711          357 NNLLIGE-IPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPEL-DALDSLKILDISNNQISG  434 (681)
Q Consensus       357 ~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~  434 (681)
                      +| +... ++.....+++|++|+++++.-.|               ....+.+++.....+ ..+++|+.|.+..|.+++
T Consensus       323 ~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g---------------~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~  386 (594)
T 2p1m_B          323 DY-IEDAGLEVLASTCKDLRELRVFPSEPFV---------------MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTN  386 (594)
T ss_dssp             GG-GHHHHHHHHHHHCTTCCEEEEECSCTTC---------------SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCH
T ss_pred             Cc-cCHHHHHHHHHhCCCCCEEEEecCcccc---------------cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCH
Confidence            66 3322 22222346677777764321000               000111111111111 124455555555555544


Q ss_pred             ccccccC-CCCCCcEEECC--C----CcCCC-----cchhhhhcCCCCCEEEccCCcCcccCCccccc-CCccceeeccc
Q 005711          435 EIPLTLA-GLKSLEIVDFS--S----NNLSG-----SLNDAITKWTNLKYFSIARNKLSGNLPNWLFS-FQAIQMMDFST  501 (681)
Q Consensus       435 ~~p~~~~-~l~~L~~L~L~--~----n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~ls~  501 (681)
                      ..+..+. .+++|+.|+++  +    +.+++     .++..+..+++|++|++++ .+++..+..+.. +++|+.|++++
T Consensus       387 ~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~  465 (594)
T 2p1m_B          387 AALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAF  465 (594)
T ss_dssp             HHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEES
T ss_pred             HHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccC
Confidence            4333332 35555555555  2    33331     1222345566666666655 444433333333 56666666666


Q ss_pred             CccccCCCCCcccccCCccccccCCccc-ccccccceeecCCCcCcccCCC--cCCCCCCCEEECCCCcCcccCCccc-c
Q 005711          502 NKFMGFIPDAVGMDLSDNLLHGTIPKGL-FQLQGLEYLNLSFNFLDGQVPG--LYRLRSLRALDLSHNSLTGQIPGNI-S  577 (681)
Q Consensus       502 n~~~~~~p~~~~L~Ls~N~l~g~ip~~l-~~l~~L~~L~Ls~N~l~~~ip~--~~~l~~L~~L~Ls~N~l~~~~p~~l-~  577 (681)
                      |.+++                 ..+..+ ..+++|++|+|++|.+++....  ...+++|+.|++++|.++......+ .
T Consensus       466 ~~i~~-----------------~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  528 (594)
T 2p1m_B          466 AGDSD-----------------LGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQ  528 (594)
T ss_dssp             CCSSH-----------------HHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHH
T ss_pred             CCCcH-----------------HHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHH
Confidence            55432                 111222 3466777777777776543322  3346777777777777654333333 3


Q ss_pred             CCCCCCeEecccCc
Q 005711          578 SLQELTLLNLSYNS  591 (681)
Q Consensus       578 ~l~~L~~L~ls~N~  591 (681)
                      .++.|+...+..+.
T Consensus       529 ~lp~l~i~~~~~~~  542 (594)
T 2p1m_B          529 KMPKLNVEVIDERG  542 (594)
T ss_dssp             HCTTEEEEEECSSS
T ss_pred             hCCCCEEEEecCCC
Confidence            45666555555443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=1.1e-27  Score=246.50  Aligned_cols=262  Identities=20%  Similarity=0.165  Sum_probs=136.3

Q ss_pred             ECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCCc
Q 005711          112 VLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNS  191 (681)
Q Consensus       112 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~  191 (681)
                      +++.+.+...+...+..+++|++|+|++|.+++..|..|.++++|++|++++|.+ .+..+  +..+ ++|++|++++|.
T Consensus        16 ~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~--~~~l-~~L~~L~Ls~n~   91 (317)
T 3o53_A           16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL-YETLD--LESL-STLRTLDLNNNY   91 (317)
T ss_dssp             SCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCC-EEEEE--ETTC-TTCCEEECCSSE
T ss_pred             eccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcC-Ccchh--hhhc-CCCCEEECcCCc
Confidence            3333333333333333444444444444444444334444444444444444421 11111  3333 455555555555


Q ss_pred             CccccCccccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChhh-c
Q 005711          192 FCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCI-A  270 (681)
Q Consensus       192 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l-~  270 (681)
                      +++. +    ..++|++|++++|.+++..+..+.+|++|++++|++++..+..+..+++|++|++++|.+++..+..+ .
T Consensus        92 l~~l-~----~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  166 (317)
T 3o53_A           92 VQEL-L----VGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA  166 (317)
T ss_dssp             EEEE-E----ECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGG
T ss_pred             cccc-c----CCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhh
Confidence            5421 1    22567777777777666655555556666666666665555555566666666666666655444444 2


Q ss_pred             ccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCC
Q 005711          271 SLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSL  350 (681)
Q Consensus       271 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L  350 (681)
                      .+++|++|++++|.+++. + ....++                           +|+.|++++|++++ +|..+..+++|
T Consensus       167 ~l~~L~~L~L~~N~l~~~-~-~~~~l~---------------------------~L~~L~Ls~N~l~~-l~~~~~~l~~L  216 (317)
T 3o53_A          167 SSDTLEHLNLQYNFIYDV-K-GQVVFA---------------------------KLKTLDLSSNKLAF-MGPEFQSAAGV  216 (317)
T ss_dssp             GTTTCCEEECTTSCCCEE-E-CCCCCT---------------------------TCCEEECCSSCCCE-ECGGGGGGTTC
T ss_pred             ccCcCCEEECCCCcCccc-c-cccccc---------------------------cCCEEECCCCcCCc-chhhhcccCcc
Confidence            455555555555555432 1 111233                           45555555555553 33335555666


Q ss_pred             CEEeccCCccccccccccCCCCCCCEEEccCCcCc-cccCcccccCCCcceeeccc-ccccccCc
Q 005711          351 QALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLS-GSIPLNIVGCFQLLALIVNN-NNLSGEIQ  413 (681)
Q Consensus       351 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~p~~~~~~~~L~~L~l~~-n~l~~~~~  413 (681)
                      ++|++++|.++ .+|..+..+++|+.|++++|.+. +.+|..+..+++|+.+++.+ +.+.+..+
T Consensus       217 ~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~  280 (317)
T 3o53_A          217 TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE  280 (317)
T ss_dssp             SEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred             cEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence            66666666665 34555666666666666666666 55556666666666666663 33444443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=4.1e-25  Score=239.04  Aligned_cols=226  Identities=24%  Similarity=0.194  Sum_probs=123.4

Q ss_pred             ccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccC
Q 005711          227 LLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSF  306 (681)
Q Consensus       227 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  306 (681)
                      +++|++++|++++..+..+.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++
T Consensus        77 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  156 (452)
T 3zyi_A           77 TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRN  156 (452)
T ss_dssp             CSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCS
T ss_pred             ccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCC
Confidence            44444444444444455555555666666666655555555555555555555555555544444444455555555555


Q ss_pred             CCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCcccccc-ccccCCCCCCCEEEccCCcCc
Q 005711          307 NDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEI-PARIGNLTYLQVIDLSHNMLS  385 (681)
Q Consensus       307 n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~  385 (681)
                      |.+++                           ..+..+..+++|++|++++|...+.+ +..+.++++|++|++++|.++
T Consensus       157 N~l~~---------------------------~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~  209 (452)
T 3zyi_A          157 NPIES---------------------------IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK  209 (452)
T ss_dssp             CCCCE---------------------------ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred             CCcce---------------------------eCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence            54443                           22333444444444444442222222 223444455555555555544


Q ss_pred             cccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhh
Q 005711          386 GSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAIT  465 (681)
Q Consensus       386 ~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~  465 (681)
                      + +| .+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++++..+..|.++++|++|++++|++++..+..+.
T Consensus       210 ~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  287 (452)
T 3zyi_A          210 D-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT  287 (452)
T ss_dssp             S-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSST
T ss_pred             c-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhc
Confidence            3 22 244445555555555555555555566666677777777777666666666777777777777777665556666


Q ss_pred             cCCCCCEEEccCCcCc
Q 005711          466 KWTNLKYFSIARNKLS  481 (681)
Q Consensus       466 ~l~~L~~L~L~~n~l~  481 (681)
                      .+++|+.|++++|.+.
T Consensus       288 ~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          288 PLRYLVELHLHHNPWN  303 (452)
T ss_dssp             TCTTCCEEECCSSCEE
T ss_pred             cccCCCEEEccCCCcC
Confidence            6777777777777665

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=1.9e-26  Score=250.98  Aligned_cols=234  Identities=21%  Similarity=0.216  Sum_probs=136.8

Q ss_pred             CccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecc
Q 005711          325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVN  404 (681)
Q Consensus       325 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~  404 (681)
                      +|+.|++++|.+++..|..+..+++|++|+|++|.+++..|  +..+++|++|++++|.+++..+     .++|+.|+++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~  107 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAA  107 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECc
Confidence            57777777777776666677777777777777777766554  6677777777777777664322     2556666666


Q ss_pred             cccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhh-cCCCCCEEEccCCcCccc
Q 005711          405 NNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAIT-KWTNLKYFSIARNKLSGN  483 (681)
Q Consensus       405 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~  483 (681)
                      +|.+++..+.   .+++|+.|++++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|++|+|++|.+++.
T Consensus       108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~  184 (487)
T 3oja_A          108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV  184 (487)
T ss_dssp             SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred             CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence            6666554432   235666666666666666666666666666666666666665565554 566666666666666543


Q ss_pred             CCcccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCCcCCCCCCCEEEC
Q 005711          484 LPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDL  563 (681)
Q Consensus       484 ~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L~L  563 (681)
                      .+  ...+++|+.|++++|.++                  .+|+.+..+++|+.|+|++|.+++..+.+..+++|+.|++
T Consensus       185 ~~--~~~l~~L~~L~Ls~N~l~------------------~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l  244 (487)
T 3oja_A          185 KG--QVVFAKLKTLDLSSNKLA------------------FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDL  244 (487)
T ss_dssp             EC--CCCCTTCCEEECCSSCCC------------------EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEEC
T ss_pred             cc--cccCCCCCEEECCCCCCC------------------CCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEc
Confidence            11  112444444444333332                  2333355555666666666666542222555556666666


Q ss_pred             CCCcCc-ccCCccccCCCCCCeEecc
Q 005711          564 SHNSLT-GQIPGNISSLQELTLLNLS  588 (681)
Q Consensus       564 s~N~l~-~~~p~~l~~l~~L~~L~ls  588 (681)
                      ++|.+. +.+|..+..++.|+.++++
T Consensus       245 ~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          245 RGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             TTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCCcCcchHHHHHhCCCCcEEecc
Confidence            666555 4445555555555555544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=5.9e-25  Score=236.95  Aligned_cols=246  Identities=22%  Similarity=0.191  Sum_probs=134.4

Q ss_pred             CEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCccc
Q 005711          207 KHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLN  286 (681)
Q Consensus       207 ~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  286 (681)
                      +.++.++..++........+++.|+|++|++++..+..+.++++|++|++++|.+.+..+..+.++++|++|++++|.++
T Consensus        46 ~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~  125 (440)
T 3zyj_A           46 SKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT  125 (440)
T ss_dssp             CEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS
T ss_pred             CEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC
Confidence            34444444444333323333444444444444444455555555555555555555444455555555555555555554


Q ss_pred             cccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCcccccc-c
Q 005711          287 YEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEI-P  365 (681)
Q Consensus       287 ~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-~  365 (681)
                      ...+..+..+++|++|++++|.+                           ++..+..+..+++|++|++++|...+.+ +
T Consensus       126 ~~~~~~~~~l~~L~~L~L~~N~i---------------------------~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~  178 (440)
T 3zyj_A          126 TIPNGAFVYLSKLKELWLRNNPI---------------------------ESIPSYAFNRIPSLRRLDLGELKRLSYISE  178 (440)
T ss_dssp             SCCTTTSCSCSSCCEEECCSCCC---------------------------CEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred             eeCHhHhhccccCceeeCCCCcc---------------------------cccCHHHhhhCcccCEeCCCCCCCcceeCc
Confidence            33333444444444444444444                           4333334444455555555543222222 2


Q ss_pred             cccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCC
Q 005711          366 ARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKS  445 (681)
Q Consensus       366 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  445 (681)
                      ..|.++++|++|++++|.++ .+| .+..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..+..|.++++
T Consensus       179 ~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  256 (440)
T 3zyj_A          179 GAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS  256 (440)
T ss_dssp             TTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTT
T ss_pred             chhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCC
Confidence            23445555555555555554 233 2445555555555555555555556666677777777777777666667777777


Q ss_pred             CcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCc
Q 005711          446 LEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLS  481 (681)
Q Consensus       446 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  481 (681)
                      |++|+|++|++++..+..+..+++|+.|++++|.+.
T Consensus       257 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          257 LVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             CCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            777777777777666666677777777777777765

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=2.6e-24  Score=238.90  Aligned_cols=261  Identities=26%  Similarity=0.327  Sum_probs=136.8

Q ss_pred             CCCEEEccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEE
Q 005711          250 SLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLL  329 (681)
Q Consensus       250 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L  329 (681)
                      +++.|++++|.++ .+|..+.  ++|++|++++|.++ .+|.   .+++|++|++++|.++ .+|.   .+   ++|++|
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l---~~L~~L  106 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LP---PGLLEL  106 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CC---TTCCEE
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CC---CCCCEE
Confidence            4566666666655 4444433  45555555555554 2333   3445555555555544 2332   11   245555


Q ss_pred             EccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeeccccccc
Q 005711          330 DLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLS  409 (681)
Q Consensus       330 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~  409 (681)
                      ++++|.+++ +|.   .+++|+.|++++|++++ +|..   +++|++|++++|.++                        
T Consensus       107 ~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~------------------------  154 (622)
T 3g06_A          107 SIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLA------------------------  154 (622)
T ss_dssp             EECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS------------------------
T ss_pred             ECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCC------------------------
Confidence            555555442 222   23444445555444442 2221   244444444444443                        


Q ss_pred             ccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccc
Q 005711          410 GEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLF  489 (681)
Q Consensus       410 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~  489 (681)
                      +. |.   .+++|+.|++++|.+++ +|   ..+++|+.|++++|.+++ +|.   ..++|+.|++++|.++ .+|..  
T Consensus       155 ~l-~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~~--  219 (622)
T 3g06_A          155 SL-PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPAL--  219 (622)
T ss_dssp             CC-CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCCC--
T ss_pred             Cc-CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCCC--
Confidence            21 11   22455566666665553 33   334556666666666653 222   1355666666666665 23321  


Q ss_pred             cCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCCcCCCCCCCEEECCCCcCc
Q 005711          490 SFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLT  569 (681)
Q Consensus       490 ~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L~Ls~N~l~  569 (681)
                       +++|+.|++++|+++                  .+|   ..+++|+.|+|++|+++ .+|.  .+++|+.|+|++|+++
T Consensus       220 -~~~L~~L~Ls~N~L~------------------~lp---~~l~~L~~L~Ls~N~L~-~lp~--~~~~L~~L~Ls~N~L~  274 (622)
T 3g06_A          220 -PSGLKELIVSGNRLT------------------SLP---VLPSELKELMVSGNRLT-SLPM--LPSGLLSLSVYRNQLT  274 (622)
T ss_dssp             -CTTCCEEECCSSCCS------------------CCC---CCCTTCCEEECCSSCCS-CCCC--CCTTCCEEECCSSCCC
T ss_pred             -CCCCCEEEccCCccC------------------cCC---CCCCcCcEEECCCCCCC-cCCc--ccccCcEEeCCCCCCC
Confidence             244555555444443                  233   23466777777777777 3444  4567777777777777


Q ss_pred             ccCCccccCCCCCCeEecccCcceeeCC
Q 005711          570 GQIPGNISSLQELTLLNLSYNSFSGFVP  597 (681)
Q Consensus       570 ~~~p~~l~~l~~L~~L~ls~N~l~~~~p  597 (681)
                       .+|..+..+++|+.|++++|++++.+|
T Consensus       275 -~lp~~l~~l~~L~~L~L~~N~l~~~~~  301 (622)
T 3g06_A          275 -RLPESLIHLSSETTVNLEGNPLSERTL  301 (622)
T ss_dssp             -SCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred             -cCCHHHhhccccCEEEecCCCCCCcCH
Confidence             667777777777777777777776654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=3.3e-28  Score=273.38  Aligned_cols=232  Identities=16%  Similarity=0.169  Sum_probs=152.5

Q ss_pred             ccccCCCCCCEE-eccCCccccccccccCCCCCCCEEEccCCcCccccCc-ccccCCCcceeeccccccccc-CccccCC
Q 005711          342 LKITELKSLQAL-FLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPL-NIVGCFQLLALIVNNNNLSGE-IQPELDA  418 (681)
Q Consensus       342 ~~l~~l~~L~~L-~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~~~~L~~L~l~~n~l~~~-~~~~~~~  418 (681)
                      ..+.++++|+.| .+.+... +.++..+..+++|++|++++|.+++.... .+..+++|+.|++.+| +... ++.....
T Consensus       259 ~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~  336 (594)
T 2p1m_B          259 VALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLAST  336 (594)
T ss_dssp             HHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHH
T ss_pred             HHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHh
Confidence            345666666666 3333221 23344344566777777777765543222 2345677777777766 3221 2222234


Q ss_pred             CCCccEEEcc---------cCcceeccccccC-CCCCCcEEECCCCcCCCcchhhhh-cCCCCCEEEcc--C----CcCc
Q 005711          419 LDSLKILDIS---------NNQISGEIPLTLA-GLKSLEIVDFSSNNLSGSLNDAIT-KWTNLKYFSIA--R----NKLS  481 (681)
Q Consensus       419 l~~L~~L~Ls---------~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~--~----n~l~  481 (681)
                      +++|+.|++.         .+.+++.....+. ++++|++|+++.|.+++.....+. .+++|+.|+++  +    +.++
T Consensus       337 ~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~  416 (594)
T 2p1m_B          337 CKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT  416 (594)
T ss_dssp             CTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT
T ss_pred             CCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc
Confidence            7788888883         3455544333333 489999999999999876666664 69999999999  4    5555


Q ss_pred             c-----cCCcccccCCccceeecccCccccCCCCCcccccCCccccccCCccccc-ccccceeecCCCcCcccCCC-c-C
Q 005711          482 G-----NLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDGQVPG-L-Y  553 (681)
Q Consensus       482 ~-----~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~-l~~L~~L~Ls~N~l~~~ip~-~-~  553 (681)
                      +     .++..+..+++|+.|++++ .+++                 ..+..+.. +++|++|+|++|.+++..+. + .
T Consensus       417 ~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~-----------------~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~  478 (594)
T 2p1m_B          417 LEPLDIGFGAIVEHCKDLRRLSLSG-LLTD-----------------KVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLS  478 (594)
T ss_dssp             CCCTHHHHHHHHHHCTTCCEEECCS-SCCH-----------------HHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHH
T ss_pred             CCchhhHHHHHHhhCCCccEEeecC-cccH-----------------HHHHHHHHhchhccEeeccCCCCcHHHHHHHHh
Confidence            2     2233366788899988865 3332                 33344444 78999999999999765444 3 6


Q ss_pred             CCCCCCEEECCCCcCcccCCc-cccCCCCCCeEecccCcce
Q 005711          554 RLRSLRALDLSHNSLTGQIPG-NISSLQELTLLNLSYNSFS  593 (681)
Q Consensus       554 ~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~ls~N~l~  593 (681)
                      .+++|+.|++++|.+++..+. ....+++|+.|++++|+++
T Consensus       479 ~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          479 GCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             HCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             cCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            689999999999999765544 3456899999999999984

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=1.7e-24  Score=218.16  Aligned_cols=227  Identities=23%  Similarity=0.246  Sum_probs=131.5

Q ss_pred             EEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccc
Q 005711          329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNL  408 (681)
Q Consensus       329 L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l  408 (681)
                      ++..+..++ .+|..+.  ++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus        12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l   88 (276)
T 2z62_A           12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI   88 (276)
T ss_dssp             EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence            344444444 3444332  3566666666666655555566666666666666666544443444444444444444444


Q ss_pred             cccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCccc
Q 005711          409 SGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWL  488 (681)
Q Consensus       409 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~  488 (681)
                      .+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++.                       .+|..+
T Consensus        89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------------~l~~~~  145 (276)
T 2z62_A           89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-----------------------KLPEYF  145 (276)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-----------------------CCCGGG
T ss_pred             CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCcccee-----------------------cCchhh
Confidence            333333344444444444444444443333444444444444444444431                       134444


Q ss_pred             ccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccc----eeecCCCcCcccCCCcCCCCCCCEEECC
Q 005711          489 FSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLE----YLNLSFNFLDGQVPGLYRLRSLRALDLS  564 (681)
Q Consensus       489 ~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~----~L~Ls~N~l~~~ip~~~~l~~L~~L~Ls  564 (681)
                      ..+++|+.|++++|++.+                 ..+..+..+++|+    +|++++|++++..+......+|+.|+++
T Consensus       146 ~~l~~L~~L~Ls~N~l~~-----------------~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~  208 (276)
T 2z62_A          146 SNLTNLEHLDLSSNKIQS-----------------IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALD  208 (276)
T ss_dssp             GGCTTCCEEECCSSCCCE-----------------ECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECC
T ss_pred             ccCCCCCEEECCCCCCCc-----------------CCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECC
Confidence            444444444444443332                 2233444455555    7889999988766665556689999999


Q ss_pred             CCcCcccCCccccCCCCCCeEecccCcceeeCCC
Q 005711          565 HNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPW  598 (681)
Q Consensus       565 ~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  598 (681)
                      +|++++..+..+..+++|+.|++++|++.|.+|.
T Consensus       209 ~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  242 (276)
T 2z62_A          209 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  242 (276)
T ss_dssp             SSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred             CCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence            9999977777788899999999999999998874

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=5.7e-26  Score=247.21  Aligned_cols=233  Identities=22%  Similarity=0.173  Sum_probs=127.5

Q ss_pred             CCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEE
Q 005711          107 FLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLD  186 (681)
Q Consensus       107 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~  186 (681)
                      +|++|+|++|.+++..|..|+.+++|++|+|++|.+++..|  |..+++|++|++                         
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L-------------------------   87 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL-------------------------   87 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEEC-------------------------
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEe-------------------------
Confidence            56666666666665555556666666666666666554433  444444444444                         


Q ss_pred             ccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCC
Q 005711          187 FSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIP  266 (681)
Q Consensus       187 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p  266 (681)
                       ++|.+++. |    ..++|++|++++|.+++..+..+++|+.|++++|.+++..|..++.+++|++|++++|.+++..|
T Consensus        88 -s~N~l~~l-~----~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  161 (487)
T 3oja_A           88 -NNNYVQEL-L----VGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF  161 (487)
T ss_dssp             -CSSEEEEE-E----ECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG
T ss_pred             -cCCcCCCC-C----CCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcCh
Confidence             44444422 1    12567777777777766666556666666666676666666666667777777777777776666


Q ss_pred             hhhc-ccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCccccc
Q 005711          267 TCIA-SLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKIT  345 (681)
Q Consensus       267 ~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~  345 (681)
                      ..+. .+++|++|++++|.+++..+  ...+++|+.|++++|.+++. |..+..+.   +|+.|++++|.+++ +|..+.
T Consensus       162 ~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~---~L~~L~Ls~N~l~~-lp~~l~  234 (487)
T 3oja_A          162 AELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAA---GVTWISLRNNKLVL-IEKALR  234 (487)
T ss_dssp             GGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGT---TCSEEECTTSCCCE-ECTTCC
T ss_pred             HHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCC-CHhHcCCC---CccEEEecCCcCcc-cchhhc
Confidence            6654 56667777777766664421  22355555555555555532 22233332   45555555555442 344444


Q ss_pred             CCCCCCEEeccCCccc-cccccccCCCCCCCEEEc
Q 005711          346 ELKSLQALFLSNNLLI-GEIPARIGNLTYLQVIDL  379 (681)
Q Consensus       346 ~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L  379 (681)
                      .+++|+.|++++|.+. +.+|..+..++.|+.+++
T Consensus       235 ~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~  269 (487)
T 3oja_A          235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK  269 (487)
T ss_dssp             CCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred             cCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence            4444444444444443 333333444444433333

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=2.8e-24  Score=215.62  Aligned_cols=219  Identities=24%  Similarity=0.242  Sum_probs=166.3

Q ss_pred             CCCCCCCceeecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcC
Q 005711           67 SNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVV  146 (681)
Q Consensus        67 ~~cc~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  146 (681)
                      .++|.|.|+.|.. .+.++.++++++.++. +|..+.  +++++|++++|.+++..+..|+++++|++|++++|.++...
T Consensus         2 ~~~C~~~~~~C~c-~~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~   77 (270)
T 2o6q_A            2 EALCKKDGGVCSC-NNNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP   77 (270)
T ss_dssp             CCCBGGGTCSBEE-ETTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred             CccCCCCCCCCEe-CCCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence            4789999999863 3456689999999884 665554  68999999999999887788999999999999999999666


Q ss_pred             CccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCc
Q 005711          147 PDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQS  226 (681)
Q Consensus       147 p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  226 (681)
                      +..|.++++|++|++++|+ +.+..+..+..+ ++|++|++++|.+++..+..+..+++|++|++++|.+++..      
T Consensus        78 ~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~------  149 (270)
T 2o6q_A           78 AGIFKELKNLETLWVTDNK-LQALPIGVFDQL-VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP------  149 (270)
T ss_dssp             TTTTSSCTTCCEEECCSSC-CCCCCTTTTTTC-SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC------
T ss_pred             hhhhcCCCCCCEEECCCCc-CCcCCHhHcccc-cCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC------
Confidence            6677889999999999994 445455566777 78899999988888777777888888888888887776433      


Q ss_pred             ccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccC
Q 005711          227 LLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSF  306 (681)
Q Consensus       227 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  306 (681)
                                     +..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus       150 ---------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  214 (270)
T 2o6q_A          150 ---------------KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE  214 (270)
T ss_dssp             ---------------TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             ---------------HhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecC
Confidence                           33455666677777777776665555666677777777777777655555566677777777777


Q ss_pred             CCccCC
Q 005711          307 NDLSGP  312 (681)
Q Consensus       307 n~l~~~  312 (681)
                      |.+...
T Consensus       215 N~~~c~  220 (270)
T 2o6q_A          215 NPWDCT  220 (270)
T ss_dssp             SCBCCS
T ss_pred             CCeeCC
Confidence            776543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=1.7e-23  Score=210.84  Aligned_cols=207  Identities=24%  Similarity=0.244  Sum_probs=166.1

Q ss_pred             CccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecc
Q 005711          325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVN  404 (681)
Q Consensus       325 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~  404 (681)
                      ++++|++++|++++..+..+..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+.++++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            68888888888887666678888899999999998887777788888999999999999888777888888999999999


Q ss_pred             cccccccCccccCCCCCccEEEcccCcceec-cccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCC----EEEccCCc
Q 005711          405 NNNLSGEIQPELDALDSLKILDISNNQISGE-IPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLK----YFSIARNK  479 (681)
Q Consensus       405 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~----~L~L~~n~  479 (681)
                      +|.+.+..+..+..+++|+.|++++|.+++. +|..+.++++|++|++++|++++..+..+..+++|+    +|++++|.
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~  188 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP  188 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred             CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence            9998887777788999999999999999864 688899999999999999998877666666555555    44444444


Q ss_pred             CcccCCcccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCCCCC
Q 005711          480 LSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSL  558 (681)
Q Consensus       480 l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L  558 (681)
                      ++                                          .+|.......+|++|++++|++++..+. +..+++|
T Consensus       189 l~------------------------------------------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L  226 (276)
T 2z62_A          189 MN------------------------------------------FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSL  226 (276)
T ss_dssp             CC------------------------------------------EECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSC
T ss_pred             cc------------------------------------------ccCccccCCCcccEEECCCCceeecCHhHhcccccc
Confidence            43                                          2233333445789999999999876666 6789999


Q ss_pred             CEEECCCCcCcccCC
Q 005711          559 RALDLSHNSLTGQIP  573 (681)
Q Consensus       559 ~~L~Ls~N~l~~~~p  573 (681)
                      +.|++++|.+++..|
T Consensus       227 ~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          227 QKIWLHTNPWDCSCP  241 (276)
T ss_dssp             CEEECCSSCBCCCTT
T ss_pred             cEEEccCCcccccCC
Confidence            999999999987544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=6.8e-24  Score=213.03  Aligned_cols=207  Identities=19%  Similarity=0.150  Sum_probs=149.4

Q ss_pred             CccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecc
Q 005711          325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVN  404 (681)
Q Consensus       325 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~  404 (681)
                      +|+.|++++|.++. ++ .+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus        42 ~L~~L~l~~~~i~~-~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  117 (272)
T 3rfs_A           42 SIDQIIANNSDIKS-VQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV  117 (272)
T ss_dssp             TCCEEECTTSCCCC-CT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             ceeeeeeCCCCccc-cc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence            55555665555542 22 345566666666666666542  245666666666666666665555555666666666666


Q ss_pred             cccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccC
Q 005711          405 NNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNL  484 (681)
Q Consensus       405 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  484 (681)
                      +|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..
T Consensus       118 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  197 (272)
T 3rfs_A          118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP  197 (272)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC
Confidence            66666666666777788888888888888766667778888888888888888777777788888888888888888777


Q ss_pred             CcccccCCccceeecccCccccCCCCCcccccCCccccccCCccccccccc
Q 005711          485 PNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGL  535 (681)
Q Consensus       485 p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L  535 (681)
                      |..+..+++|+.|++++|.+.+..|....++++.|+++|.+|..++.+...
T Consensus       198 ~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~n~~~g~ip~~~~~~~~~  248 (272)
T 3rfs_A          198 DGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAPD  248 (272)
T ss_dssp             TTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred             HHHHhCCcCCCEEEccCCCccccCcHHHHHHHHHHhCCCcccCcccccCCC
Confidence            777788888888888888888888888888888888888888888776543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=7.3e-23  Score=205.28  Aligned_cols=184  Identities=23%  Similarity=0.271  Sum_probs=132.6

Q ss_pred             CcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEcc
Q 005711          397 QLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIA  476 (681)
Q Consensus       397 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  476 (681)
                      +++.|++++|.+.+..+..+..+++|++|++++|.++...+..|.++++|++|++++|++++..+..+..+++|++|+++
T Consensus        38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  117 (270)
T 2o6q_A           38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD  117 (270)
T ss_dssp             TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred             CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence            34444444444444444455566666666666666665444555666777777777777765555566667777777777


Q ss_pred             CCcCcccCCcccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCC
Q 005711          477 RNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRL  555 (681)
Q Consensus       477 ~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l  555 (681)
                      +|.+++..+..+..+++|+.|++++|++.+                 ..+..+..+++|++|+|++|++++..+. +..+
T Consensus       118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-----------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  180 (270)
T 2o6q_A          118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQS-----------------LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKL  180 (270)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCC-----------------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             CCccCeeCHHHhCcCcCCCEEECCCCcCCc-----------------cCHhHccCCcccceeEecCCcCcEeChhHhccC
Confidence            777766555566666777776666665542                 2234467889999999999999977766 8889


Q ss_pred             CCCCEEECCCCcCcccCCccccCCCCCCeEecccCcceeeCC
Q 005711          556 RSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVP  597 (681)
Q Consensus       556 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p  597 (681)
                      ++|+.|++++|++++..+..+..+++|+.|++++|++.|.++
T Consensus       181 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          181 TELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             CCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence            999999999999998777789999999999999999998876

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=2e-22  Score=203.84  Aligned_cols=206  Identities=22%  Similarity=0.196  Sum_probs=134.6

Q ss_pred             ccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCcc
Q 005711          344 ITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLK  423 (681)
Q Consensus       344 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  423 (681)
                      +..++++++++++++.++ .+|..+.  ++++.|++++|.+++..+                        ..+..+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~------------------------~~~~~l~~L~   58 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSL------------------------ATLMPYTRLT   58 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEG------------------------GGGTTCTTCC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCH------------------------HHhhcCCCCC
Confidence            344555666666665555 3333332  455555555555554444                        4455555566


Q ss_pred             EEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCc
Q 005711          424 ILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNK  503 (681)
Q Consensus       424 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~  503 (681)
                      .|++++|.+++..+.  +.+++|++|++++|+++ .+|..+..+++|++|++++|++++..|..+..+++|+.|++++|+
T Consensus        59 ~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~  135 (290)
T 1p9a_G           59 QLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE  135 (290)
T ss_dssp             EEECTTSCCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC
T ss_pred             EEECCCCccCcccCC--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC
Confidence            666666665543221  45666666666666665 445555666666666666666665555556666666666666655


Q ss_pred             cccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCCCC
Q 005711          504 FMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQEL  582 (681)
Q Consensus       504 ~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  582 (681)
                      +++                 ..+..+..+++|+.|+|++|++++..+. +..+++|+.|++++|+++ .+|..+.....|
T Consensus       136 l~~-----------------~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L  197 (290)
T 1p9a_G          136 LKT-----------------LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL  197 (290)
T ss_dssp             CCC-----------------CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCC
T ss_pred             CCc-----------------cChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccC
Confidence            542                 2334466788999999999999865555 677999999999999998 778888888899


Q ss_pred             CeEecccCcceeeCC
Q 005711          583 TLLNLSYNSFSGFVP  597 (681)
Q Consensus       583 ~~L~ls~N~l~~~~p  597 (681)
                      +.+++++|++.|.+.
T Consensus       198 ~~l~L~~Np~~C~c~  212 (290)
T 1p9a_G          198 PFAFLHGNPWLCNCE  212 (290)
T ss_dssp             SEEECCSCCBCCSGG
T ss_pred             CeEEeCCCCccCcCc
Confidence            999999999988663

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.89  E-value=1.9e-24  Score=224.39  Aligned_cols=214  Identities=19%  Similarity=0.204  Sum_probs=131.5

Q ss_pred             CCCCCCCceeecCCCCcEEEEEcCCCCCcccccccccCC--CCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCC
Q 005711           67 SNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKL--SFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVG  144 (681)
Q Consensus        67 ~~cc~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~l~~l--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  144 (681)
                      ..|..|.++.|+  +..++.++++++.+.   +..+..+  ++++.|++++|.+.+..+. +.++++|++|++++|.+++
T Consensus        34 ~vc~~W~~~~~~--~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~  107 (336)
T 2ast_B           34 GVCKRWYRLASD--ESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEV  107 (336)
T ss_dssp             SSCHHHHHHHTC--STTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECH
T ss_pred             HHHHHHHHHhcC--chhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCH
Confidence            456679988875  345677888887765   3345555  6788888888888776555 4567888888888887765


Q ss_pred             c-CCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCC-cCcc-ccCccccCCCCCCEEEccCc-cCcccc
Q 005711          145 V-VPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFN-SFCG-EIPESLYYLKSLKHLDLEKN-NLTGNV  220 (681)
Q Consensus       145 ~-~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n-~l~~-~~p~~l~~l~~L~~L~L~~n-~l~~~~  220 (681)
                      . +|..+..+++|++|++++| .+.+..+..++.+ ++|++|++++| .+++ .++..+.++++|++|++++| .+++. 
T Consensus       108 ~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~-~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~-  184 (336)
T 2ast_B          108 STLHGILSQCSKLQNLSLEGL-RLSDPIVNTLAKN-SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK-  184 (336)
T ss_dssp             HHHHHHHTTBCCCSEEECTTC-BCCHHHHHHHTTC-TTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH-
T ss_pred             HHHHHHHhhCCCCCEEeCcCc-ccCHHHHHHHhcC-CCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH-
Confidence            5 6667777777777777777 3444555556665 66777777766 4554 24555566666666666665 54421 


Q ss_pred             cCcCCcccEEECCCCCCccccchhhccCC-CCCEEEccCC--ccc-cCCChhhcccCcccEEecCCCc-cccccCccccC
Q 005711          221 HDFYQSLLVLNLGSNRFSGTLPCFAASAM-SLTVLKLDNN--SVV-GGIPTCIASLQALTHLNLSHNH-LNYEISPRLVF  295 (681)
Q Consensus       221 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~-~L~~L~L~~n--~l~-~~~p~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~  295 (681)
                                         .++..+..++ +|++|++++|  .++ +.+|..+..+++|++|++++|. +++..+..+..
T Consensus       185 -------------------~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~  245 (336)
T 2ast_B          185 -------------------HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ  245 (336)
T ss_dssp             -------------------HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG
T ss_pred             -------------------HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhC
Confidence                               1344455555 5666666655  233 2334444555555555555555 44444445555


Q ss_pred             CCCCcEEeccCCC
Q 005711          296 FEKLLLLDLSFND  308 (681)
Q Consensus       296 l~~L~~L~L~~n~  308 (681)
                      +++|++|++++|.
T Consensus       246 l~~L~~L~l~~~~  258 (336)
T 2ast_B          246 LNYLQHLSLSRCY  258 (336)
T ss_dssp             CTTCCEEECTTCT
T ss_pred             CCCCCEeeCCCCC
Confidence            5555555555553

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=1.1e-22  Score=208.49  Aligned_cols=203  Identities=24%  Similarity=0.232  Sum_probs=102.8

Q ss_pred             CCCCEEeccCCcccccccccc--CCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEE
Q 005711          348 KSLQALFLSNNLLIGEIPARI--GNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKIL  425 (681)
Q Consensus       348 ~~L~~L~L~~n~l~~~~~~~l--~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  425 (681)
                      ++|++|++++|.+.+..|..+  ..+++|++|++++|.+++..+..-.                    ..+..+++|++|
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~--------------------~~~~~~~~L~~L  150 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAE--------------------LQQWLKPGLKVL  150 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHH--------------------HHTTBCSCCCEE
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHH--------------------HHhhhccCCCEE
Confidence            446666666666666555555  5566666666666666543331000                    011233444444


Q ss_pred             EcccCcceeccccccCCCCCCcEEECCCCcCCCc--ch--hhhhcCCCCCEEEccCCcCcccCCc----ccccCCcccee
Q 005711          426 DISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGS--LN--DAITKWTNLKYFSIARNKLSGNLPN----WLFSFQAIQMM  497 (681)
Q Consensus       426 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~~--~~~~~l~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L  497 (681)
                      ++++|.+.+..+..++.+++|++|++++|++.+.  ++  ..+..+++|++|++++|+++. ++.    .+..+++|+.|
T Consensus       151 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L  229 (310)
T 4glp_A          151 SIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSL  229 (310)
T ss_dssp             EEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSE
T ss_pred             EeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEE
Confidence            4444444444444444444444444444444321  11  112344444555555544431 111    12344445544


Q ss_pred             ecccCccccCCCCCcccccCCccccccCCcccccc---cccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCC
Q 005711          498 DFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQL---QGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIP  573 (681)
Q Consensus       498 ~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l---~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p  573 (681)
                      |+++|++.+                 .+|..++.+   ++|++|+|++|+++ .+|. +.  ++|+.||+++|++++. |
T Consensus       230 ~Ls~N~l~~-----------------~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~  288 (310)
T 4glp_A          230 DLSHNSLRA-----------------TVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-P  288 (310)
T ss_dssp             ECTTSCCCC-----------------CCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-C
T ss_pred             ECCCCCCCc-----------------cchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-c
Confidence            444444432                 223333333   46777777777777 4555 43  6777777777777753 3


Q ss_pred             ccccCCCCCCeEecccCcce
Q 005711          574 GNISSLQELTLLNLSYNSFS  593 (681)
Q Consensus       574 ~~l~~l~~L~~L~ls~N~l~  593 (681)
                      . +..+++|+.|++++|+++
T Consensus       289 ~-~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          289 Q-PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             C-TTSCCCCSCEECSSTTTS
T ss_pred             h-hhhCCCccEEECcCCCCC
Confidence            2 456677777777777765

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=3e-22  Score=201.00  Aligned_cols=208  Identities=23%  Similarity=0.210  Sum_probs=113.1

Q ss_pred             ccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCC
Q 005711          271 SLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSL  350 (681)
Q Consensus       271 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L  350 (681)
                      .+++|+.|++++|.++.  ...+..+++|++|++++|.+++.  ..+..+.   +|++|++++|.+++..+..+..+++|
T Consensus        39 ~l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~---~L~~L~L~~n~l~~~~~~~~~~l~~L  111 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHDI--SALKELT---NLTYLILTGNQLQSLPNGVFDKLTNL  111 (272)
T ss_dssp             HHTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCCC--GGGTTCT---TCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             cccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCCc--hhhcCCC---CCCEEECCCCccCccChhHhcCCcCC
Confidence            34444455554444431  12244455555555555554431  1222222   55555555555555444445555666


Q ss_pred             CEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccC
Q 005711          351 QALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNN  430 (681)
Q Consensus       351 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  430 (681)
                      ++|++++|++++..+..+.++++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|
T Consensus       112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N  191 (272)
T 3rfs_A          112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN  191 (272)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence            66666666665555555555666666666666655444444455555555555555555544444555666666666666


Q ss_pred             cceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCC
Q 005711          431 QISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQ  492 (681)
Q Consensus       431 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~  492 (681)
                      .+++..+..+..+++|++|++++|.+.+.       +++|+.+++..|.++|.+|.+++.+.
T Consensus       192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          192 QLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             cCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccC
Confidence            66655555566666666666666665533       33556666666666666666555443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=4.7e-24  Score=223.60  Aligned_cols=258  Identities=19%  Similarity=0.200  Sum_probs=133.2

Q ss_pred             EeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCc----ccccCCC-CCCEEeccCCccccccccccCCC-----
Q 005711          302 LDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIP----LKITELK-SLQALFLSNNLLIGEIPARIGNL-----  371 (681)
Q Consensus       302 L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p----~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l-----  371 (681)
                      ++++.|.++|.+|..+....   +|++|++++|.+++..+    ..+..++ +|++|++++|.+++..+..+..+     
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~---~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~   79 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPH---GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP   79 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCT---TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred             cccccccchHHHHHHHhCCC---CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccC
Confidence            34555555554444333222   35555555555554433    3444444 55555555555554444333332     


Q ss_pred             CCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCC-CCccEEEcccCcceeccccc----cCC-CCC
Q 005711          372 TYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDAL-DSLKILDISNNQISGEIPLT----LAG-LKS  445 (681)
Q Consensus       372 ~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~p~~----~~~-l~~  445 (681)
                      ++|++|++++|.+++..+..+..                    .+..+ ++|+.|++++|.+++..+..    +.. .++
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~--------------------~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~  139 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVK--------------------TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS  139 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHH--------------------HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTT
T ss_pred             CCccEEECcCCcCChHHHHHHHH--------------------HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCc
Confidence            45555555555554433332221                    12222 55666666666665444332    222 246


Q ss_pred             CcEEECCCCcCCCc----chhhhhcCC-CCCEEEccCCcCcccCCcccc----cC-CccceeecccCccccCCCCCcccc
Q 005711          446 LEIVDFSSNNLSGS----LNDAITKWT-NLKYFSIARNKLSGNLPNWLF----SF-QAIQMMDFSTNKFMGFIPDAVGMD  515 (681)
Q Consensus       446 L~~L~L~~n~l~~~----~~~~~~~l~-~L~~L~L~~n~l~~~~p~~~~----~l-~~L~~L~ls~n~~~~~~p~~~~L~  515 (681)
                      |++|++++|.+++.    ++..+..++ +|++|++++|++++..+..+.    .. ++|+.||+++|.+.+.-.      
T Consensus       140 L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~------  213 (362)
T 3goz_A          140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSY------  213 (362)
T ss_dssp             CCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH------
T ss_pred             eeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHH------
Confidence            66666666666532    233334444 666666666666654443332    22 356666666555542100      


Q ss_pred             cCCccccccCCccccc-ccccceeecCCCcCcccCC----C-cCCCCCCCEEECCCCcCccc-------CCccccCCCCC
Q 005711          516 LSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDGQVP----G-LYRLRSLRALDLSHNSLTGQ-------IPGNISSLQEL  582 (681)
Q Consensus       516 Ls~N~l~g~ip~~l~~-l~~L~~L~Ls~N~l~~~ip----~-~~~l~~L~~L~Ls~N~l~~~-------~p~~l~~l~~L  582 (681)
                             ..++..+.. .++|++|+|++|.+++..+    . +..+++|+.|++++|.+.+.       ++..+..+++|
T Consensus       214 -------~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L  286 (362)
T 3goz_A          214 -------AELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKI  286 (362)
T ss_dssp             -------HHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEE
T ss_pred             -------HHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCce
Confidence                   023444444 3467777777777765433    2 34567777777777774433       23345666777


Q ss_pred             CeEecccCcceee
Q 005711          583 TLLNLSYNSFSGF  595 (681)
Q Consensus       583 ~~L~ls~N~l~~~  595 (681)
                      +.||+++|++.+.
T Consensus       287 ~~LdL~~N~l~~~  299 (362)
T 3goz_A          287 ILVDKNGKEIHPS  299 (362)
T ss_dssp             EEECTTSCBCCGG
T ss_pred             EEEecCCCcCCCc
Confidence            7777777777654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=1.4e-21  Score=197.78  Aligned_cols=203  Identities=24%  Similarity=0.248  Sum_probs=157.7

Q ss_pred             ccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCC
Q 005711          293 LVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLT  372 (681)
Q Consensus       293 l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~  372 (681)
                      +..++++++++++++.++ .+|..+.     +.++.|++++|.+++..+..+..+++|++|++++|.+++..+  ...++
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~-----~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~   77 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP-----KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLP   77 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC-----TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCT
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC-----CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCC
Confidence            445666666777766665 4554433     267788888888877667777788888888888888775433  26778


Q ss_pred             CCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECC
Q 005711          373 YLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFS  452 (681)
Q Consensus       373 ~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~  452 (681)
                      +|++|++++|.++ .+|..+..+++|+.|++++|++++..+..|..+++|+.|++++|++++..+..|..+++|+.|+++
T Consensus        78 ~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  156 (290)
T 1p9a_G           78 VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA  156 (290)
T ss_dssp             TCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             cCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECC
Confidence            8888888888877 567777778888888888888887777778888889999999998887777778888899999999


Q ss_pred             CCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccc
Q 005711          453 SNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFM  505 (681)
Q Consensus       453 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~  505 (681)
                      +|++++..+..+..+++|++|++++|+++ .+|..+....+|+.+++++|.+.
T Consensus       157 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          157 NNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             TSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence            99988666667788889999999999887 67888888888888888888765

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.88  E-value=4.2e-24  Score=226.23  Aligned_cols=190  Identities=21%  Similarity=0.247  Sum_probs=114.3

Q ss_pred             cCCCcceeecccccccc----cCccccCCCCCccEEEcccCcceecccccc----CCC---------CCCcEEECCCCcC
Q 005711          394 GCFQLLALIVNNNNLSG----EIQPELDALDSLKILDISNNQISGEIPLTL----AGL---------KSLEIVDFSSNNL  456 (681)
Q Consensus       394 ~~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~----~~l---------~~L~~L~L~~n~l  456 (681)
                      .+++|++|++++|.+.+    .++..+..+++|+.|++++|.+++..+..+    ..+         ++|++|++++|++
T Consensus        92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l  171 (386)
T 2ca6_A           92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL  171 (386)
T ss_dssp             TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred             hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCC
Confidence            33444444444444443    233344555566666666666543322222    222         6677777777776


Q ss_pred             C-Ccch---hhhhcCCCCCEEEccCCcCcc-----cCCcccccCCccceeecccCccccCCCCCcccccCCccccccCCc
Q 005711          457 S-GSLN---DAITKWTNLKYFSIARNKLSG-----NLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPK  527 (681)
Q Consensus       457 ~-~~~~---~~~~~l~~L~~L~L~~n~l~~-----~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~  527 (681)
                      + +.++   ..+..+++|++|++++|.+..     ..|..+..+++|+.|++++|.++..-             .+.+|.
T Consensus       172 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g-------------~~~l~~  238 (386)
T 2ca6_A          172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG-------------SSALAI  238 (386)
T ss_dssp             TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH-------------HHHHHH
T ss_pred             CcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH-------------HHHHHH
Confidence            5 3333   345566677777777776652     22335556666666666665543100             025566


Q ss_pred             ccccccccceeecCCCcCccc----CCC-c--CCCCCCCEEECCCCcCcc----cCCccc-cCCCCCCeEecccCcceee
Q 005711          528 GLFQLQGLEYLNLSFNFLDGQ----VPG-L--YRLRSLRALDLSHNSLTG----QIPGNI-SSLQELTLLNLSYNSFSGF  595 (681)
Q Consensus       528 ~l~~l~~L~~L~Ls~N~l~~~----ip~-~--~~l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~L~ls~N~l~~~  595 (681)
                      .+..+++|++|+|++|.+++.    +|. +  +.+++|+.|+|++|.+++    .+|..+ .++++|++|++++|++++.
T Consensus       239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence            777778888888888887764    344 4  347888888888888887    477666 5578888888888888765


Q ss_pred             C
Q 005711          596 V  596 (681)
Q Consensus       596 ~  596 (681)
                      .
T Consensus       319 ~  319 (386)
T 2ca6_A          319 D  319 (386)
T ss_dssp             S
T ss_pred             h
Confidence            4

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=6.5e-23  Score=212.84  Aligned_cols=228  Identities=17%  Similarity=0.207  Sum_probs=112.6

Q ss_pred             CccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccc-cccccCCCCCCCEEEccCCcCccccCcccccCCCcceeec
Q 005711          325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGE-IPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIV  403 (681)
Q Consensus       325 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l  403 (681)
                      .++.+++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+.          
T Consensus        71 ~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~----------  139 (336)
T 2ast_B           71 GVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA----------  139 (336)
T ss_dssp             TCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT----------
T ss_pred             cceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHh----------
Confidence            455555555555544433 33455555555555555443 444555555555555555555544444443          


Q ss_pred             ccccccccCccccCCCCCccEEEcccC-cceec-cccccCCCCCCcEEECCCC-cCCCc-chhhhhcCC-CCCEEEccCC
Q 005711          404 NNNNLSGEIQPELDALDSLKILDISNN-QISGE-IPLTLAGLKSLEIVDFSSN-NLSGS-LNDAITKWT-NLKYFSIARN  478 (681)
Q Consensus       404 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~-~p~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~L~~n  478 (681)
                                    .+++|+.|++++| .+++. ++..+.++++|++|++++| .+++. ++..+..++ +|++|++++|
T Consensus       140 --------------~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~  205 (336)
T 2ast_B          140 --------------KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY  205 (336)
T ss_dssp             --------------TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred             --------------cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence                          3444444444444 33331 3333444555555555555 44432 344444555 5555555555


Q ss_pred             --cCc-ccCCcccccCCccceeecccCc-cccCCCCCcccccCCccccccCCcccccccccceeecCCCc-CcccC-CCc
Q 005711          479 --KLS-GNLPNWLFSFQAIQMMDFSTNK-FMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNF-LDGQV-PGL  552 (681)
Q Consensus       479 --~l~-~~~p~~~~~l~~L~~L~ls~n~-~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~-l~~~i-p~~  552 (681)
                        .++ +.+|..+..+++|+.|++++|. ++                 +..+..+.++++|++|++++|. +.... ..+
T Consensus       206 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~-----------------~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l  268 (336)
T 2ast_B          206 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK-----------------NDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL  268 (336)
T ss_dssp             GGGSCHHHHHHHHHHCTTCSEEECTTCTTCC-----------------GGGGGGGGGCTTCCEEECTTCTTCCGGGGGGG
T ss_pred             cccCCHHHHHHHHhhCCCCCEEeCCCCCcCC-----------------HHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHH
Confidence              233 2334444445555555544443 22                 1334445555666666666663 22111 124


Q ss_pred             CCCCCCCEEECCCCcCcccCCccccCC-CCCCeEecccCcceeeCCC
Q 005711          553 YRLRSLRALDLSHNSLTGQIPGNISSL-QELTLLNLSYNSFSGFVPW  598 (681)
Q Consensus       553 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~~~~p~  598 (681)
                      .++++|+.|++++| ++.   +.+..+ ..+..|++++|++++..|.
T Consensus       269 ~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~  311 (336)
T 2ast_B          269 GEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARP  311 (336)
T ss_dssp             GGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred             hcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCC
Confidence            55666666666666 221   123333 2355566677777666553

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=6.3e-23  Score=215.00  Aligned_cols=258  Identities=21%  Similarity=0.198  Sum_probs=139.3

Q ss_pred             EECCCCCCccccchhhccCCCCCEEEccCCccccCCC----hhhcccC-cccEEecCCCccccccCccccCC-----CCC
Q 005711          230 LNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIP----TCIASLQ-ALTHLNLSHNHLNYEISPRLVFF-----EKL  299 (681)
Q Consensus       230 L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p----~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l-----~~L  299 (681)
                      .+++.|.++|.+|..+...++|++|++++|.+++..+    ..+..++ +|++|++++|.+++..+..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            4566677777777766666667777777777776555    5566666 67777777777766555555543     677


Q ss_pred             cEEeccCCCccCCCChhhhhc-ccC-CCccEEEccCCCCcCCCcccc----cC-CCCCCEEeccCCccccccc----ccc
Q 005711          300 LLLDLSFNDLSGPLPSKIAQT-TEK-AGLVLLDLSHNRFSGEIPLKI----TE-LKSLQALFLSNNLLIGEIP----ARI  368 (681)
Q Consensus       300 ~~L~L~~n~l~~~~p~~~~~~-~~~-~~L~~L~Ls~n~l~~~~p~~l----~~-l~~L~~L~L~~n~l~~~~~----~~l  368 (681)
                      ++|++++|.+++..+..+... ... ++|+.|++++|.+++..+..+    .. .++|++|++++|.+++..+    ..+
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            777777777766555544442 111 367777777777665544332    22 2466666666666654322    223


Q ss_pred             CCCC-CCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCC-CCccEEEcccCcceec----cccccCC
Q 005711          369 GNLT-YLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDAL-DSLKILDISNNQISGE----IPLTLAG  442 (681)
Q Consensus       369 ~~l~-~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~----~p~~~~~  442 (681)
                      ...+ +|++|++++|.+++..+..+...                    +..+ ++|+.|++++|.+++.    ++..+..
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~--------------------l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~  222 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLASKNCAELAKF--------------------LASIPASVTSLDLSANLLGLKSYAELAYIFSS  222 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHH--------------------HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred             hcCCccccEeeecCCCCchhhHHHHHHH--------------------HHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence            3333 66666666666655444332211                    1122 2444555555544431    2222322


Q ss_pred             -CCCCcEEECCCCcCCCcch----hhhhcCCCCCEEEccCCcCccc-------CCcccccCCccceeecccCccccC
Q 005711          443 -LKSLEIVDFSSNNLSGSLN----DAITKWTNLKYFSIARNKLSGN-------LPNWLFSFQAIQMMDFSTNKFMGF  507 (681)
Q Consensus       443 -l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~-------~p~~~~~l~~L~~L~ls~n~~~~~  507 (681)
                       .++|++|++++|.+++..+    ..+..+++|++|++++|.+.+.       ++..+..+++|+.||+++|++.+.
T Consensus       223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence             2355555555555544322    2223445555555555553221       122334455566666666655443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=2.4e-21  Score=192.00  Aligned_cols=192  Identities=24%  Similarity=0.269  Sum_probs=146.2

Q ss_pred             CCCCCCceeecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCC
Q 005711           68 NCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVP  147 (681)
Q Consensus        68 ~cc~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p  147 (681)
                      +|+.|.|..|..   ..++++++++.+. .+|..+.  +.+++|+|++|.+++..+..|+++++|++|+|++|.+++..|
T Consensus         3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~   76 (251)
T 3m19_A            3 TCETVTGCTCNE---GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA   76 (251)
T ss_dssp             -CHHHHSSEEEG---GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             cCCCCCceEcCC---CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence            688999999952   2346889998887 4565555  689999999999999888899999999999999999998888


Q ss_pred             ccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCcc
Q 005711          148 DAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSL  227 (681)
Q Consensus       148 ~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L  227 (681)
                      ..|.++++|++|++++| .+.+..+..+..+ ++|++|++++|.+++..+..+..+++|++|++++|.+++..+      
T Consensus        77 ~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------  148 (251)
T 3m19_A           77 GVFDDLTELGTLGLANN-QLASLPLGVFDHL-TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA------  148 (251)
T ss_dssp             TTTTTCTTCCEEECTTS-CCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT------
T ss_pred             hHhccCCcCCEEECCCC-cccccChhHhccc-CCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH------
Confidence            88999999999999999 4555556667777 788888888888886666667888888888888877765433      


Q ss_pred             cEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCccccc
Q 005711          228 LVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYE  288 (681)
Q Consensus       228 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  288 (681)
                                     ..+..+++|++|++++|++++..+..+..+++|++|++++|.+...
T Consensus       149 ---------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          149 ---------------GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             ---------------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             ---------------HHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence                           3455556666666666666655555566666666666666666543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=2.8e-22  Score=205.41  Aligned_cols=201  Identities=19%  Similarity=0.193  Sum_probs=141.7

Q ss_pred             CccEEEccCCCCcCCCcccc--cCCCCCCEEeccCCccccccc----cccCCCCCCCEEEccCCcCccccCcccccCCCc
Q 005711          325 GLVLLDLSHNRFSGEIPLKI--TELKSLQALFLSNNLLIGEIP----ARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQL  398 (681)
Q Consensus       325 ~L~~L~Ls~n~l~~~~p~~l--~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L  398 (681)
                      +|++|++++|.+++..|..+  ..+++|++|++++|.+++..+    ..+..+++|++|++++|.+.+..+.        
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~--------  163 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCE--------  163 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTT--------
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHH--------
Confidence            68888888888888888777  778888888888888876544    2334566777777777766544443        


Q ss_pred             ceeecccccccccCccccCCCCCccEEEcccCcceec--c--ccccCCCCCCcEEECCCCcCCCc--chh-hhhcCCCCC
Q 005711          399 LALIVNNNNLSGEIQPELDALDSLKILDISNNQISGE--I--PLTLAGLKSLEIVDFSSNNLSGS--LND-AITKWTNLK  471 (681)
Q Consensus       399 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~--p~~~~~l~~L~~L~L~~n~l~~~--~~~-~~~~l~~L~  471 (681)
                                      .+..+++|++|++++|++.+.  +  +..+..+++|++|++++|+++..  .+. .+..+++|+
T Consensus       164 ----------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~  227 (310)
T 4glp_A          164 ----------------QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPH  227 (310)
T ss_dssp             ----------------SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCS
T ss_pred             ----------------HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCC
Confidence                            344556666666666665432  1  22335677788888888887622  112 246778888


Q ss_pred             EEEccCCcCcccCCcccccC---CccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCccc
Q 005711          472 YFSIARNKLSGNLPNWLFSF---QAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQ  548 (681)
Q Consensus       472 ~L~L~~n~l~~~~p~~~~~l---~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~  548 (681)
                      +|++++|++.+..|..+..+   ++|+.|++++|+++                  .+|..+.  ++|++|+|++|++++.
T Consensus       228 ~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~------------------~lp~~~~--~~L~~L~Ls~N~l~~~  287 (310)
T 4glp_A          228 SLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE------------------QVPKGLP--AKLRVLDLSSNRLNRA  287 (310)
T ss_dssp             SEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC------------------SCCSCCC--SCCSCEECCSCCCCSC
T ss_pred             EEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC------------------chhhhhc--CCCCEEECCCCcCCCC
Confidence            88888888887767666665   46777666666654                  4555554  6899999999999854


Q ss_pred             CCCcCCCCCCCEEECCCCcCcc
Q 005711          549 VPGLYRLRSLRALDLSHNSLTG  570 (681)
Q Consensus       549 ip~~~~l~~L~~L~Ls~N~l~~  570 (681)
                       |.+..+++|+.|++++|.++.
T Consensus       288 -~~~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          288 -PQPDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             -CCTTSCCCCSCEECSSTTTSC
T ss_pred             -chhhhCCCccEEECcCCCCCC
Confidence             557778999999999998874

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=4.3e-23  Score=218.46  Aligned_cols=241  Identities=20%  Similarity=0.244  Sum_probs=148.5

Q ss_pred             ChhhcccCcccEEecCCCccccccC----ccccCCCCCcEEeccCC---CccCCCChhhhh----cccCCCccEEEccCC
Q 005711          266 PTCIASLQALTHLNLSHNHLNYEIS----PRLVFFEKLLLLDLSFN---DLSGPLPSKIAQ----TTEKAGLVLLDLSHN  334 (681)
Q Consensus       266 p~~l~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n---~l~~~~p~~~~~----~~~~~~L~~L~Ls~n  334 (681)
                      +..+..+++|++|++++|.++...+    ..+..+++|++|++++|   .+++.+|..+..    +..+++|++|++++|
T Consensus        25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n  104 (386)
T 2ca6_A           25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN  104 (386)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence            3344444445555555554443322    22334555555555553   333344443311    122336666666666


Q ss_pred             CCcC----CCcccccCCCCCCEEeccCCccccccccccC----CC---------CCCCEEEccCCcCc-cccC---cccc
Q 005711          335 RFSG----EIPLKITELKSLQALFLSNNLLIGEIPARIG----NL---------TYLQVIDLSHNMLS-GSIP---LNIV  393 (681)
Q Consensus       335 ~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~----~l---------~~L~~L~Ls~n~l~-~~~p---~~~~  393 (681)
                      .+++    .+|..+..+++|++|+|++|.+++..+..+.    .+         ++|++|++++|.++ +.++   ..+.
T Consensus       105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~  184 (386)
T 2ca6_A          105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ  184 (386)
T ss_dssp             CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence            6665    3555566666777777777766543332222    22         67777777777765 3333   3455


Q ss_pred             cCCCcceeecccccccc-----cCccccCCCCCccEEEcccCcce----eccccccCCCCCCcEEECCCCcCCCc----c
Q 005711          394 GCFQLLALIVNNNNLSG-----EIQPELDALDSLKILDISNNQIS----GEIPLTLAGLKSLEIVDFSSNNLSGS----L  460 (681)
Q Consensus       394 ~~~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~----~~~p~~~~~l~~L~~L~L~~n~l~~~----~  460 (681)
                      .+++|+.|++++|.+..     ..+..+..+++|+.|++++|.++    +.+|..+..+++|++|++++|.+++.    +
T Consensus       185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l  264 (386)
T 2ca6_A          185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV  264 (386)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred             hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHH
Confidence            66677777777777662     23336677788888888888885    55677778888888888888888755    4


Q ss_pred             hhhhhc--CCCCCEEEccCCcCcc----cCCccc-ccCCccceeecccCcccc
Q 005711          461 NDAITK--WTNLKYFSIARNKLSG----NLPNWL-FSFQAIQMMDFSTNKFMG  506 (681)
Q Consensus       461 ~~~~~~--l~~L~~L~L~~n~l~~----~~p~~~-~~l~~L~~L~ls~n~~~~  506 (681)
                      +..+..  +++|++|++++|.+++    .+|..+ .++++|+.|++++|++++
T Consensus       265 ~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~  317 (386)
T 2ca6_A          265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  317 (386)
T ss_dssp             HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence            556633  7888888888888886    467666 557888888887777764

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=3.2e-21  Score=189.59  Aligned_cols=205  Identities=21%  Similarity=0.181  Sum_probs=116.5

Q ss_pred             CCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCc-CccccCcccccCCCcceeeccc-ccccccCcccc
Q 005711          339 EIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNM-LSGSIPLNIVGCFQLLALIVNN-NNLSGEIQPEL  416 (681)
Q Consensus       339 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~~~~L~~L~l~~-n~l~~~~~~~~  416 (681)
                      .+|. +.  ++|++|++++|++++..+..|.++++|++|++++|. +++..+..+.++++|++|++++ |.+++..+..|
T Consensus        25 ~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f  101 (239)
T 2xwt_C           25 RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL  101 (239)
T ss_dssp             SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred             ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence            4555 32  367777777777776666667777777777777775 6544444555555555555554 55554444444


Q ss_pred             CCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCC-cCcccCCcccccCCccc
Q 005711          417 DALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARN-KLSGNLPNWLFSFQAIQ  495 (681)
Q Consensus       417 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~  495 (681)
                      ..+++|+.|++++|.+++ +|. +..+++|+                     .|++|++++| .+++..+..+..+++|+
T Consensus       102 ~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~---------------------~L~~L~l~~N~~l~~i~~~~~~~l~~L~  158 (239)
T 2xwt_C          102 KELPLLKFLGIFNTGLKM-FPD-LTKVYSTD---------------------IFFILEITDNPYMTSIPVNAFQGLCNET  158 (239)
T ss_dssp             ECCTTCCEEEEEEECCCS-CCC-CTTCCBCC---------------------SEEEEEEESCTTCCEECTTTTTTTBSSE
T ss_pred             CCCCCCCEEeCCCCCCcc-ccc-cccccccc---------------------cccEEECCCCcchhhcCcccccchhcce
Confidence            455555555555555543 333 44444444                     0004555544 44433333344444444


Q ss_pred             -eeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCc-CcccCCC-cCCC-CCCCEEECCCCcCccc
Q 005711          496 -MMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNF-LDGQVPG-LYRL-RSLRALDLSHNSLTGQ  571 (681)
Q Consensus       496 -~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~-l~~~ip~-~~~l-~~L~~L~Ls~N~l~~~  571 (681)
                       .|++++|++.                  .+|......++|++|++++|+ +++..+. +..+ ++|+.|++++|++++ 
T Consensus       159 ~~L~l~~n~l~------------------~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-  219 (239)
T 2xwt_C          159 LTLKLYNNGFT------------------SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-  219 (239)
T ss_dssp             EEEECCSCCCC------------------EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-
T ss_pred             eEEEcCCCCCc------------------ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-
Confidence             4444444433                  333333333677778888884 7755555 6667 788888888888874 


Q ss_pred             CCccccCCCCCCeEecccC
Q 005711          572 IPGNISSLQELTLLNLSYN  590 (681)
Q Consensus       572 ~p~~l~~l~~L~~L~ls~N  590 (681)
                      +|..  .++.|+.|+++++
T Consensus       220 l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          220 LPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             CCCT--TCTTCSEEECTTC
T ss_pred             CChh--HhccCceeeccCc
Confidence            4433  5667777777765

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=6.8e-21  Score=187.27  Aligned_cols=196  Identities=18%  Similarity=0.156  Sum_probs=143.2

Q ss_pred             CccEEEccCCCCcCCCcccccCCCCCCEEeccCCc-cccccccccCCCCCCCEEEccC-CcCccccCcccccCCCcceee
Q 005711          325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNL-LIGEIPARIGNLTYLQVIDLSH-NMLSGSIPLNIVGCFQLLALI  402 (681)
Q Consensus       325 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~~~~L~~L~  402 (681)
                      +++.|++++|++++..+..+..+++|++|++++|+ +++..+..|.++++|++|++++ |.+++..+..+.++++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            57777777777776555577777888888888886 6655555677778888888887 777766666777778888888


Q ss_pred             cccccccccCccccCCCCCcc---EEEcccC-cceeccccccCCCCCCc-EEECCCCcCCCcchhhhhcCCCCCEEEccC
Q 005711          403 VNNNNLSGEIQPELDALDSLK---ILDISNN-QISGEIPLTLAGLKSLE-IVDFSSNNLSGSLNDAITKWTNLKYFSIAR  477 (681)
Q Consensus       403 l~~n~l~~~~~~~~~~l~~L~---~L~Ls~n-~l~~~~p~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  477 (681)
                      +++|.+++ +|. +..+++|+   .|++++| .+++..+..|.++++|+ +|++++|+++ .+|......++|++|++++
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~  188 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNK  188 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTT
T ss_pred             CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCC
Confidence            88887776 444 66777777   8888888 88876667788888888 8888888887 4444333337888888888


Q ss_pred             Cc-CcccCCcccccC-CccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCC
Q 005711          478 NK-LSGNLPNWLFSF-QAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFN  543 (681)
Q Consensus       478 n~-l~~~~p~~~~~l-~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N  543 (681)
                      |+ +++..+..+..+ ++|+.|++++|+++                  .+|..  .+++|+.|+++++
T Consensus       189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~------------------~l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVT------------------ALPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             CTTCCEECTTTTTTCSBCCSEEECTTCCCC------------------CCCCT--TCTTCSEEECTTC
T ss_pred             CCCcccCCHHHhhccccCCcEEECCCCccc------------------cCChh--HhccCceeeccCc
Confidence            84 776556667777 78888777777665                  33433  4667777777765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=1.2e-20  Score=192.69  Aligned_cols=123  Identities=29%  Similarity=0.438  Sum_probs=59.7

Q ss_pred             CccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecc
Q 005711          325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVN  404 (681)
Q Consensus       325 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~  404 (681)
                      +|+.|++++|.++. +| .+..+++|++|++++|.+++..+  +..+++|++|++++|.+++                  
T Consensus        42 ~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~------------------   99 (308)
T 1h6u_A           42 GITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN------------------   99 (308)
T ss_dssp             TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC------------------
T ss_pred             CcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC------------------
Confidence            45555555555442 22 34444455555555554443222  4444444444444444432                  


Q ss_pred             cccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCc
Q 005711          405 NNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLS  481 (681)
Q Consensus       405 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  481 (681)
                            .  ..+..+++|+.|++++|.+++. + .+..+++|++|++++|.+++..+  +..+++|++|++++|.++
T Consensus       100 ------~--~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~  164 (308)
T 1h6u_A          100 ------V--SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS  164 (308)
T ss_dssp             ------C--GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred             ------c--hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC
Confidence                  1  1244455555555555555532 2 15555556666666555554322  455555555555555554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=2e-20  Score=191.04  Aligned_cols=193  Identities=19%  Similarity=0.325  Sum_probs=151.0

Q ss_pred             CCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEE
Q 005711          346 ELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKIL  425 (681)
Q Consensus       346 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  425 (681)
                      .+++|++|++++|.+.. ++ .+..+++|++|++++|.++                        +..+  +..+++|+.|
T Consensus        39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~------------------------~~~~--~~~l~~L~~L   90 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT------------------------DLAP--LKNLTKITEL   90 (308)
T ss_dssp             HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC------------------------CCGG--GTTCCSCCEE
T ss_pred             HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCC------------------------CChh--HccCCCCCEE
Confidence            45566666666666553 22 3555556666666655554                        3222  6678899999


Q ss_pred             EcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccc
Q 005711          426 DISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFM  505 (681)
Q Consensus       426 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~  505 (681)
                      ++++|.+++. + .+..+++|++|++++|++++. + .+..+++|++|++++|.+++..+  +..+++|+.|++++|+++
T Consensus        91 ~L~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~  164 (308)
T 1h6u_A           91 ELSGNPLKNV-S-AIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS  164 (308)
T ss_dssp             ECCSCCCSCC-G-GGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred             EccCCcCCCc-h-hhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC
Confidence            9999999863 3 688999999999999999864 3 38899999999999999986433  778888888888888765


Q ss_pred             cCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCCcCCCCCCCEEECCCCcCcccCCccccCCCCCCeE
Q 005711          506 GFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLL  585 (681)
Q Consensus       506 ~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  585 (681)
                                        .++. +..+++|+.|++++|++++. +.+..+++|+.|++++|++++..|  +..+++|+.|
T Consensus       165 ------------------~~~~-l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L  222 (308)
T 1h6u_A          165 ------------------DLTP-LANLSKLTTLKADDNKISDI-SPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIV  222 (308)
T ss_dssp             ------------------CCGG-GTTCTTCCEEECCSSCCCCC-GGGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEE
T ss_pred             ------------------CChh-hcCCCCCCEEECCCCccCcC-hhhcCCCCCCEEEccCCccCcccc--ccCCCCCCEE
Confidence                              2333 77899999999999999854 458889999999999999997654  8899999999


Q ss_pred             ecccCccee
Q 005711          586 NLSYNSFSG  594 (681)
Q Consensus       586 ~ls~N~l~~  594 (681)
                      ++++|++++
T Consensus       223 ~l~~N~i~~  231 (308)
T 1h6u_A          223 TLTNQTITN  231 (308)
T ss_dssp             EEEEEEEEC
T ss_pred             EccCCeeec
Confidence            999999976

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.84  E-value=4.2e-20  Score=183.00  Aligned_cols=178  Identities=23%  Similarity=0.203  Sum_probs=91.5

Q ss_pred             CCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEE
Q 005711          298 KLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVI  377 (681)
Q Consensus       298 ~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  377 (681)
                      ..+.++++++.++ .+|..+..     .++.|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++|++|
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~~-----~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   88 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIPA-----DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTL   88 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCCT-----TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCeEEecCCCCcc-ccCCCCCC-----CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEE
Confidence            3445555555554 34433321     45555555555555555555555555555555555555555555555555555


Q ss_pred             EccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCC
Q 005711          378 DLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLS  457 (681)
Q Consensus       378 ~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~  457 (681)
                      ++++|.+++..+..+                        ..+++|+.|++++|.+++..+..+..+++|++|++++|+++
T Consensus        89 ~L~~n~l~~~~~~~~------------------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  144 (251)
T 3m19_A           89 GLANNQLASLPLGVF------------------------DHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ  144 (251)
T ss_dssp             ECTTSCCCCCCTTTT------------------------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcccccChhHh------------------------cccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC
Confidence            555555554444444                        44445555555555554443344444555555555555555


Q ss_pred             CcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccc
Q 005711          458 GSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFM  505 (681)
Q Consensus       458 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~  505 (681)
                      +..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.
T Consensus       145 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          145 SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             ccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence            444444455555555555555555444444444555555555555444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.83  E-value=1.2e-19  Score=189.11  Aligned_cols=239  Identities=18%  Similarity=0.199  Sum_probs=112.3

Q ss_pred             EEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCc-ccccCCCcce-eeccc
Q 005711          328 LLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPL-NIVGCFQLLA-LIVNN  405 (681)
Q Consensus       328 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~~~~L~~-L~l~~  405 (681)
                      .++.++++++ .+|..+.  +++++|+|++|+++...+..|.++++|++|+|++|.+.+.+|. .|.+++++.+ +.+..
T Consensus        13 ~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           13 VFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             EEEEESTTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             EEEecCCCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            3444444444 3443331  3455555555555533333455555555555555554443432 3344444443 33334


Q ss_pred             ccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCC-CcCCCcchhhhhcCC-CCCEEEccCCcCccc
Q 005711          406 NNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSS-NNLSGSLNDAITKWT-NLKYFSIARNKLSGN  483 (681)
Q Consensus       406 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~  483 (681)
                      |++....+..|..+++|++|++++|++.+..+..+....++..+++.+ +++....+..+..+. .++.|++++|+++ .
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~  168 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-E  168 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-E
T ss_pred             CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-C
Confidence            455544455555555555555555555544444444445555555543 333332233333332 3555666666555 3


Q ss_pred             CCcccccCCccceeecccCccccCCCCCcccccCCccccccCCc-ccccccccceeecCCCcCcccCCCcCCCCCCCEEE
Q 005711          484 LPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPK-GLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALD  562 (681)
Q Consensus       484 ~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~-~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L~  562 (681)
                      +|...+...+|+.+++++++..+                 .+|. .|..+++|++|||++|+++. +|. +.+.+|+.|.
T Consensus       169 i~~~~f~~~~L~~l~l~~~n~l~-----------------~i~~~~f~~l~~L~~LdLs~N~l~~-lp~-~~~~~L~~L~  229 (350)
T 4ay9_X          169 IHNSAFNGTQLDELNLSDNNNLE-----------------ELPNDVFHGASGPVILDISRTRIHS-LPS-YGLENLKKLR  229 (350)
T ss_dssp             ECTTSSTTEEEEEEECTTCTTCC-----------------CCCTTTTTTEECCSEEECTTSCCCC-CCS-SSCTTCCEEE
T ss_pred             CChhhccccchhHHhhccCCccc-----------------CCCHHHhccCcccchhhcCCCCcCc-cCh-hhhccchHhh
Confidence            44444444455555554322111                 3332 34555566666666666553 232 1234444444


Q ss_pred             CCCCcCcccCCccccCCCCCCeEecccC
Q 005711          563 LSHNSLTGQIPGNISSLQELTLLNLSYN  590 (681)
Q Consensus       563 Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  590 (681)
                      +.++.--..+|. +..+++|+.++++++
T Consensus       230 ~l~~~~l~~lP~-l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          230 ARSTYNLKKLPT-LEKLVALMEASLTYP  256 (350)
T ss_dssp             CTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred             hccCCCcCcCCC-chhCcChhhCcCCCC
Confidence            444433334452 455556666665543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.83  E-value=9.8e-20  Score=174.85  Aligned_cols=181  Identities=19%  Similarity=0.145  Sum_probs=119.0

Q ss_pred             cEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccc
Q 005711          327 VLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNN  406 (681)
Q Consensus       327 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n  406 (681)
                      +.++++++.++ .+|..+  .++|++|++++|++++..+..+.++++|++|++++|.+++..+                 
T Consensus        10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----------------   69 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPN-----------------   69 (208)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT-----------------
T ss_pred             CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccCh-----------------
Confidence            45666666666 344333  3467777777777765555556666667777776666654333                 


Q ss_pred             cccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCc
Q 005711          407 NLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPN  486 (681)
Q Consensus       407 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~  486 (681)
                             ..+..+++|++|++++|.+++..+..+.++++|++|++++|++++..+..+..+++|++|++++|.+++..+.
T Consensus        70 -------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  142 (208)
T 2o6s_A           70 -------GVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG  142 (208)
T ss_dssp             -------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             -------hhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHH
Confidence                   3345566666666666666655555566677777777777777665555566677777777777777655555


Q ss_pred             ccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccc
Q 005711          487 WLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQG  534 (681)
Q Consensus       487 ~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~  534 (681)
                      .+..+++|+.|++++|.+.+..|....|+++.|+++|.+|..++.++.
T Consensus       143 ~~~~l~~L~~L~l~~N~~~~~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          143 VFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             TTTTCTTCCEEECCSCCBCCCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             HhccCCCccEEEecCCCeecCCCCHHHHHHHHHhCCceeeccCccccC
Confidence            566677777777777777777777777777777777788877766554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=3.9e-20  Score=177.65  Aligned_cols=181  Identities=23%  Similarity=0.227  Sum_probs=130.1

Q ss_pred             CCCCceeecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCcc
Q 005711           70 TNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDA  149 (681)
Q Consensus        70 c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~  149 (681)
                      |.|.+|.|+..            ++. .+|..+  .++|++|++++|.+++..+..|+++++|++|++++|++++..+..
T Consensus         7 C~~~~v~c~~~------------~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~   71 (208)
T 2o6s_A            7 CSGTTVECYSQ------------GRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV   71 (208)
T ss_dssp             EETTEEECCSS------------CCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT
T ss_pred             ECCCEEEecCC------------Ccc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhh
Confidence            67999988632            111 223222  347788888888887766666778888888888888887665666


Q ss_pred             ccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCCcCccccCccccCCCCCCEEEccCccCcccccCcC---Cc
Q 005711          150 IMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFY---QS  226 (681)
Q Consensus       150 ~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~---~~  226 (681)
                      |.++++|++|++++|+ +.+..+..+..+ ++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+   .+
T Consensus        72 ~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~  149 (208)
T 2o6s_A           72 FNKLTSLTYLNLSTNQ-LQSLPNGVFDKL-TQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS  149 (208)
T ss_dssp             TTTCTTCCEEECCSSC-CCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             cCCCCCcCEEECCCCc-CCccCHhHhcCc-cCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCC
Confidence            7778888888888873 444444456666 788888888888876666667778888888888888877665543   45


Q ss_pred             ccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChhhcccCc
Q 005711          227 LLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQA  274 (681)
Q Consensus       227 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~  274 (681)
                      |++|++++|.+.+       .+++|++|+++.|+++|.+|.+++.++.
T Consensus       150 L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          150 LQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             CCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             ccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence            7888888887654       3457888888888899888888877655

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.82  E-value=4.7e-20  Score=202.11  Aligned_cols=198  Identities=22%  Similarity=0.281  Sum_probs=135.0

Q ss_pred             CCCce-eecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCcc
Q 005711           71 NWTGV-ACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDA  149 (681)
Q Consensus        71 ~w~gv-~c~~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~  149 (681)
                      .|.++ .|.  .++++.|+++++.+.+ +|..+.  ++|++|+|++|.++ .+|   ..+++|++|++++|++++ +|. 
T Consensus        49 ~~~~l~~C~--~~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-  117 (571)
T 3cvr_A           49 AVSLLKECL--INQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-  117 (571)
T ss_dssp             HHHHHHHHH--HTTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-
T ss_pred             hhhhccccc--cCCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-
Confidence            58888 675  3478889999999887 676663  78999999999888 566   457889999999998886 666 


Q ss_pred             ccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCcccE
Q 005711          150 IMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLV  229 (681)
Q Consensus       150 ~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~  229 (681)
                      +.+  +|++|++++|++ ++ +|.   .+ ++|++|++++|.+++ +|.   .+++|++|++++|.+++           
T Consensus       118 l~~--~L~~L~Ls~N~l-~~-lp~---~l-~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-----------  174 (571)
T 3cvr_A          118 LPA--SLKHLDVDNNQL-TM-LPE---LP-ALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-----------  174 (571)
T ss_dssp             CCT--TCCEEECCSSCC-SC-CCC---CC-TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-----------
T ss_pred             hhc--CCCEEECCCCcC-CC-CCC---cC-ccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-----------
Confidence            655  888888888843 33 555   34 677777777777774 554   45677777777766665           


Q ss_pred             EECCCCCCccccchhhccCCCCCEEEccCCccccCCChhhcccCcc-------cEEecCCCccccccCccccCCCCCcEE
Q 005711          230 LNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQAL-------THLNLSHNHLNYEISPRLVFFEKLLLL  302 (681)
Q Consensus       230 L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L-------~~L~L~~n~l~~~~~~~l~~l~~L~~L  302 (681)
                                 +|. +.  ++|++|++++|+++ .+|. +..  +|       +.|++++|.++ .+|..+..+++|+.|
T Consensus       175 -----------lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L  235 (571)
T 3cvr_A          175 -----------LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTI  235 (571)
T ss_dssp             -----------CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEE
T ss_pred             -----------cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEE
Confidence                       222 22  45555555555555 3444 332  44       77777777776 466666667777777


Q ss_pred             eccCCCccCCCChhhhhcc
Q 005711          303 DLSFNDLSGPLPSKIAQTT  321 (681)
Q Consensus       303 ~L~~n~l~~~~p~~~~~~~  321 (681)
                      ++++|.+++.+|..+..+.
T Consensus       236 ~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          236 ILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             ECCSSSCCHHHHHHHHHHH
T ss_pred             EeeCCcCCCcCHHHHHHhh
Confidence            7777777777776666554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=4e-19  Score=185.05  Aligned_cols=240  Identities=18%  Similarity=0.167  Sum_probs=141.1

Q ss_pred             EEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccc-cccCCCCCCCE-EE
Q 005711          301 LLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIP-ARIGNLTYLQV-ID  378 (681)
Q Consensus       301 ~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~-L~  378 (681)
                      .++.++++++ .+|..+.     +++++|++++|+|+...+..|.++++|++|+|++|++.+.+| ..|.+++++++ +.
T Consensus        13 ~v~C~~~~Lt-~iP~~l~-----~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~   86 (350)
T 4ay9_X           13 VFLCQESKVT-EIPSDLP-----RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   86 (350)
T ss_dssp             EEEEESTTCC-SCCTTCC-----TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred             EEEecCCCCC-ccCcCcC-----CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence            3445555554 4454432     156666777776664333456667777777777776655444 34566666554 44


Q ss_pred             ccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEccc-CcceeccccccCCCC-CCcEEECCCCcC
Q 005711          379 LSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISN-NQISGEIPLTLAGLK-SLEIVDFSSNNL  456 (681)
Q Consensus       379 Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~-~L~~L~L~~n~l  456 (681)
                      ++.|+++...|..|..+++|+.|++++|.+.+..+..+....++..+++.+ +.+....+..|..+. .++.|++++|++
T Consensus        87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i  166 (350)
T 4ay9_X           87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  166 (350)
T ss_dssp             EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence            455666666666666677777777777777665555555556666777755 445544444555553 567777777777


Q ss_pred             CCcchhhhhcCCCCCEEEccCCcCcccCCc-ccccCCccceeecccCccccCCCCCcccccCCccccccCCccccccccc
Q 005711          457 SGSLNDAITKWTNLKYFSIARNKLSGNLPN-WLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGL  535 (681)
Q Consensus       457 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L  535 (681)
                      +. ++......++|+++++++++..+.+|. .+..+++|+.||+++|+++                  .+|..  .+.+|
T Consensus       167 ~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~------------------~lp~~--~~~~L  225 (350)
T 4ay9_X          167 QE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH------------------SLPSY--GLENL  225 (350)
T ss_dssp             CE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC------------------CCCSS--SCTTC
T ss_pred             cC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC------------------ccChh--hhccc
Confidence            63 443333456677777765333334543 4566777777777766665                  33432  13344


Q ss_pred             ceeecCCCcCcccCCCcCCCCCCCEEECCCCc
Q 005711          536 EYLNLSFNFLDGQVPGLYRLRSLRALDLSHNS  567 (681)
Q Consensus       536 ~~L~Ls~N~l~~~ip~~~~l~~L~~L~Ls~N~  567 (681)
                      +.|.+.++.--..+|.+.++++|+.++++++.
T Consensus       226 ~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          226 KKLRARSTYNLKKLPTLEKLVALMEASLTYPS  257 (350)
T ss_dssp             CEEECTTCTTCCCCCCTTTCCSCCEEECSCHH
T ss_pred             hHhhhccCCCcCcCCCchhCcChhhCcCCCCc
Confidence            44444333333366777778888888887654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=2.1e-19  Score=197.04  Aligned_cols=188  Identities=27%  Similarity=0.374  Sum_probs=105.8

Q ss_pred             CccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecc
Q 005711          325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVN  404 (681)
Q Consensus       325 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~  404 (681)
                      +++.|++++|.+++ +|..+.  ++|++|++++|.++ .+|   ..+++|++|++++|.+++ +|. +..          
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~----------  120 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA----------  120 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT----------
T ss_pred             CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc----------
Confidence            56667777776664 554442  56666666666666 344   335566666666666654 443 322          


Q ss_pred             cccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccC
Q 005711          405 NNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNL  484 (681)
Q Consensus       405 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  484 (681)
                                      +|+.|++++|.+++ +|.   .+++|+.|++++|++++ +|.   .+++|++|++++|++++ +
T Consensus       121 ----------------~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-l  175 (571)
T 3cvr_A          121 ----------------SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-L  175 (571)
T ss_dssp             ----------------TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-C
T ss_pred             ----------------CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-c
Confidence                            45555555555553 333   34555555555555553 332   34555566666665554 4


Q ss_pred             CcccccCCccceeecccCccccCCCCCcccccCCccccccCCccccc-----ccccceeecCCCcCcccCCC-cCCCCCC
Q 005711          485 PNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQ-----LQGLEYLNLSFNFLDGQVPG-LYRLRSL  558 (681)
Q Consensus       485 p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~-----l~~L~~L~Ls~N~l~~~ip~-~~~l~~L  558 (681)
                      |. +.  ++|+.|++++|+++                  .+|. +..     ...|+.|+|++|+++ .+|. ++.+++|
T Consensus       176 p~-l~--~~L~~L~Ls~N~L~------------------~lp~-~~~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L  232 (571)
T 3cvr_A          176 PE-LP--ESLEALDVSTNLLE------------------SLPA-VPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPT  232 (571)
T ss_dssp             CC-CC--TTCCEEECCSSCCS------------------SCCC-CC--------CCEEEECCSSCCC-CCCGGGGGSCTT
T ss_pred             ch-hh--CCCCEEECcCCCCC------------------chhh-HHHhhhcccccceEEecCCCcce-ecCHHHhcCCCC
Confidence            44 32  45555555555444                  2333 222     122377777777777 4555 6667778


Q ss_pred             CEEECCCCcCcccCCccccCC
Q 005711          559 RALDLSHNSLTGQIPGNISSL  579 (681)
Q Consensus       559 ~~L~Ls~N~l~~~~p~~l~~l  579 (681)
                      +.|+|++|.+++.+|..+..+
T Consensus       233 ~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          233 CTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             EEEECCSSSCCHHHHHHHHHH
T ss_pred             CEEEeeCCcCCCcCHHHHHHh
Confidence            888888888877777766554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.79  E-value=3.6e-19  Score=172.24  Aligned_cols=158  Identities=21%  Similarity=0.244  Sum_probs=118.8

Q ss_pred             cEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcch-hhhhcCCCCCEEEccCCcCcccCCcccccCCccceeeccc
Q 005711          423 KILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLN-DAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFST  501 (681)
Q Consensus       423 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~  501 (681)
                      +.+++++|.++ .+|..+.  +.+++|++++|++++..+ ..+..+++|++|++++|++++..+..+..+++|+.|++++
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            35666666665 3454332  345677777777765533 3466677777777777777766566666777777666666


Q ss_pred             CccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCC
Q 005711          502 NKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQ  580 (681)
Q Consensus       502 n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  580 (681)
                      |++++                 ..|..+..+++|++|+|++|++++..|. +..+++|+.|+|++|++++..|..|..++
T Consensus        91 N~l~~-----------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  153 (220)
T 2v70_A           91 NRLEN-----------------VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH  153 (220)
T ss_dssp             SCCCC-----------------CCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCT
T ss_pred             CccCc-----------------cCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCC
Confidence            65542                 4455678899999999999999988787 88999999999999999999999999999


Q ss_pred             CCCeEecccCcceeeCCCCC
Q 005711          581 ELTLLNLSYNSFSGFVPWKQ  600 (681)
Q Consensus       581 ~L~~L~ls~N~l~~~~p~~~  600 (681)
                      +|++|++++|++.|.++..+
T Consensus       154 ~L~~L~L~~N~l~c~c~l~~  173 (220)
T 2v70_A          154 SLSTLNLLANPFNCNCYLAW  173 (220)
T ss_dssp             TCCEEECCSCCEECSGGGHH
T ss_pred             CCCEEEecCcCCcCCCchHH
Confidence            99999999999999887443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.77  E-value=9.4e-19  Score=169.25  Aligned_cols=155  Identities=21%  Similarity=0.307  Sum_probs=113.4

Q ss_pred             cEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccC
Q 005711          423 KILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTN  502 (681)
Q Consensus       423 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n  502 (681)
                      +.++++++.++ .+|..+.  ++|++|++++|++++..+..+..+++|++|+|++|++++..|..+..+++|+.|++++|
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            34555555555 3444332  45666666666666555556666666666666666666655666666666666666666


Q ss_pred             ccccCCCCCcccccCCccccccCC-cccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCC
Q 005711          503 KFMGFIPDAVGMDLSDNLLHGTIP-KGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQ  580 (681)
Q Consensus       503 ~~~~~~p~~~~L~Ls~N~l~g~ip-~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  580 (681)
                      +++                  .+| ..+..+++|++|+|++|++++..|. +..+++|+.|+|++|++++..+..|..++
T Consensus        91 ~l~------------------~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  152 (220)
T 2v9t_B           91 KIT------------------ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR  152 (220)
T ss_dssp             CCC------------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred             cCC------------------ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCC
Confidence            554                  333 3456789999999999999988787 88999999999999999988888899999


Q ss_pred             CCCeEecccCcceeeCCC
Q 005711          581 ELTLLNLSYNSFSGFVPW  598 (681)
Q Consensus       581 ~L~~L~ls~N~l~~~~p~  598 (681)
                      +|+.|++++|++.|.++.
T Consensus       153 ~L~~L~L~~N~~~c~c~l  170 (220)
T 2v9t_B          153 AIQTMHLAQNPFICDCHL  170 (220)
T ss_dssp             TCCEEECCSSCEECSGGG
T ss_pred             CCCEEEeCCCCcCCCCcc
Confidence            999999999999987753

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.76  E-value=5.7e-18  Score=164.88  Aligned_cols=161  Identities=24%  Similarity=0.251  Sum_probs=113.3

Q ss_pred             CCCCCCCCCCCceeecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCC
Q 005711           63 SWVGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKF  142 (681)
Q Consensus        63 ~w~~~~cc~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  142 (681)
                      .|.+...|.|++|.|+...            + +.+|..+.  ++|++|+|++|.+++..|..|.++++|++|+|++|++
T Consensus        12 ~~~~~~~Cs~~~v~c~~~~------------l-~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l   76 (229)
T 3e6j_A           12 ACPSQCSCSGTTVDCRSKR------------H-ASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL   76 (229)
T ss_dssp             CCCTTCEEETTEEECTTSC------------C-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             cCCCCCEEeCCEeEccCCC------------c-CccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC
Confidence            4467778999999996321            1 13343333  6777888888888777777777788888888888887


Q ss_pred             CCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCCcCccccCccccCCCCCCEEEccCccCcccccC
Q 005711          143 VGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHD  222 (681)
Q Consensus       143 ~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~  222 (681)
                      .+..+..|.++++|++|++++| .+.+..+..+..+ ++|++|++++|.++ .+|..+..+++|++|++++|.+++..+.
T Consensus        77 ~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l-~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~  153 (229)
T 3e6j_A           77 GALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRL-VHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHG  153 (229)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTC-TTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTT
T ss_pred             CCcChhhcccCCCcCEEECCCC-cCCccChhHhCcc-hhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHH
Confidence            7555566777788888888877 4444445555666 77888888888777 6777777778888888888877766654


Q ss_pred             cC---CcccEEECCCCCCcccc
Q 005711          223 FY---QSLLVLNLGSNRFSGTL  241 (681)
Q Consensus       223 ~~---~~L~~L~L~~n~l~~~~  241 (681)
                      .+   .+|+.|++++|.+....
T Consensus       154 ~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          154 AFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             TTTTCTTCCEEECTTSCBCTTB
T ss_pred             HHhCCCCCCEEEeeCCCccCCc
Confidence            43   45778888888776543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=1.4e-17  Score=168.51  Aligned_cols=186  Identities=24%  Similarity=0.314  Sum_probs=109.6

Q ss_pred             EeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcc
Q 005711          353 LFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQI  432 (681)
Q Consensus       353 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  432 (681)
                      +.+..+.+.+..  .+..+++|+.|++++|.+... + .+                        ..+++|+.|++++|.+
T Consensus        29 ~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~------------------------~~l~~L~~L~L~~n~l   80 (291)
T 1h6t_A           29 DNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GI------------------------QYLPNVTKLFLNGNKL   80 (291)
T ss_dssp             HHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TG------------------------GGCTTCCEEECCSSCC
T ss_pred             HHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hH------------------------hcCCCCCEEEccCCcc
Confidence            344455444332  233456677777776666532 2 23                        3445555555555555


Q ss_pred             eeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccccCCCCCc
Q 005711          433 SGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAV  512 (681)
Q Consensus       433 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~  512 (681)
                      ++..+  +..+++|++|++++|.+++ ++ .+..+++|++|++++|.+++.  ..+..+++|+.|++++|++++      
T Consensus        81 ~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~------  148 (291)
T 1h6t_A           81 TDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD------  148 (291)
T ss_dssp             CCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC------
T ss_pred             CCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCc------
Confidence            54332  5555555555555555553 22 255556666666666655532  334555555555555554432      


Q ss_pred             ccccCCccccccCCcccccccccceeecCCCcCcccCCCcCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccCcc
Q 005711          513 GMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSF  592 (681)
Q Consensus       513 ~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l  592 (681)
                                  + ..+..+++|+.|++++|++++..| +..+++|+.|++++|.+++ +| .+..+++|+.|++++|++
T Consensus       149 ------------~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          149 ------------I-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQEC  212 (291)
T ss_dssp             ------------C-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEE
T ss_pred             ------------c-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcc
Confidence                        2 345667778888888887776544 7777888888888888875 34 377788888888888877


Q ss_pred             ee
Q 005711          593 SG  594 (681)
Q Consensus       593 ~~  594 (681)
                      ..
T Consensus       213 ~~  214 (291)
T 1h6t_A          213 LN  214 (291)
T ss_dssp             EC
T ss_pred             cC
Confidence            65

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.74  E-value=1.6e-17  Score=161.69  Aligned_cols=155  Identities=21%  Similarity=0.230  Sum_probs=112.9

Q ss_pred             ccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeeccc
Q 005711          422 LKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFST  501 (681)
Q Consensus       422 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~  501 (681)
                      -+.++.+++.+. .+|..+.  ++|++|++++|.+++..|..+..+++|++|++++|++.+..+..+..+++|+.|++++
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            345666666655 4444332  6677777777777766666666777777777777777544444556666666666666


Q ss_pred             CccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCC
Q 005711          502 NKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQ  580 (681)
Q Consensus       502 n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  580 (681)
                      |++++                 ..+..+..+++|++|+|++|+++ .+|. +..+++|+.|++++|++++..+..+..++
T Consensus        98 N~l~~-----------------l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  159 (229)
T 3e6j_A           98 NQLTV-----------------LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS  159 (229)
T ss_dssp             SCCCC-----------------CCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred             CcCCc-----------------cChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCC
Confidence            65542                 33445677889999999999998 5666 88899999999999999977777889999


Q ss_pred             CCCeEecccCcceeeCC
Q 005711          581 ELTLLNLSYNSFSGFVP  597 (681)
Q Consensus       581 ~L~~L~ls~N~l~~~~p  597 (681)
                      +|+.|++++|++.|.++
T Consensus       160 ~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          160 SLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             TCCEEECTTSCBCTTBG
T ss_pred             CCCEEEeeCCCccCCcc
Confidence            99999999999998876

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=1.5e-17  Score=184.47  Aligned_cols=172  Identities=27%  Similarity=0.359  Sum_probs=103.4

Q ss_pred             CCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCC
Q 005711          295 FFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYL  374 (681)
Q Consensus       295 ~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  374 (681)
                      .+++|+.|++++|.+.. +| .+..+.   +|+.|+|++|.+++..|  +..+++|+.|+|++|.+.+ ++ .+..+++|
T Consensus        41 ~L~~L~~L~l~~n~i~~-l~-~l~~l~---~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L  111 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIKS-VQ-GIQYLP---NVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKL  111 (605)
T ss_dssp             HHTTCCCCBCTTCCCCC-CT-TGGGCT---TCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTC
T ss_pred             cCCCCCEEECcCCCCCC-Ch-HHccCC---CCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCC
Confidence            34455555555555442 22 222222   55555555555554333  5555566666666665553 22 45556666


Q ss_pred             CEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCC
Q 005711          375 QVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSN  454 (681)
Q Consensus       375 ~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n  454 (681)
                      +.|+|++|.+.+.  ..+..+++|+.|++++|.+.+.  ..+..+++|+.|+|++|.+.+..|  +..+++|+.|+|++|
T Consensus       112 ~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N  185 (605)
T 1m9s_A          112 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN  185 (605)
T ss_dssp             CEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             CEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC
Confidence            6666666665542  2355556666666666666554  346677777888888887776655  777788888888888


Q ss_pred             cCCCcchhhhhcCCCCCEEEccCCcCccc
Q 005711          455 NLSGSLNDAITKWTNLKYFSIARNKLSGN  483 (681)
Q Consensus       455 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  483 (681)
                      ++++. + .+..+++|+.|+|++|.+.+.
T Consensus       186 ~i~~l-~-~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          186 HISDL-R-ALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CCCBC-G-GGTTCTTCSEEECCSEEEECC
T ss_pred             CCCCC-h-HHccCCCCCEEEccCCcCcCC
Confidence            77753 3 467778888888888877654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.73  E-value=3.6e-17  Score=158.11  Aligned_cols=152  Identities=20%  Similarity=0.289  Sum_probs=92.4

Q ss_pred             cEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccc
Q 005711          327 VLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNN  406 (681)
Q Consensus       327 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n  406 (681)
                      +.++++++.++ .+|..+.  ++++.|++++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|++++|
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            34555555555 3444332  45666666666665555555556666666666666666555555555555555555555


Q ss_pred             cccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCc
Q 005711          407 NLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLS  481 (681)
Q Consensus       407 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  481 (681)
                      .++...+..|..+++|+.|++++|.+++..|..|..+++|++|++++|++++..+..+..+++|++|++++|.+.
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            555444444566666777777777776666666666777777777777776665556666666777777766665

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.73  E-value=3.3e-17  Score=158.36  Aligned_cols=153  Identities=21%  Similarity=0.269  Sum_probs=87.5

Q ss_pred             EEEccCCCCcCCCcccccCCCCCCEEeccCCccccccc-cccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccc
Q 005711          328 LLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIP-ARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNN  406 (681)
Q Consensus       328 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n  406 (681)
                      .+++++|.++ .+|..+.  +.+++|++++|++++..+ ..|.++++|++|++++|.+++..+..+.++++|++|++++|
T Consensus        15 ~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           15 TVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            4555555554 2443332  234555555555554432 23455555555555555555544445555555555555555


Q ss_pred             cccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCccc
Q 005711          407 NLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGN  483 (681)
Q Consensus       407 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  483 (681)
                      .+++..+..|..+++|++|++++|.+++..|..|.++++|++|++++|++++..|..+..+++|++|++++|.+.+.
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            55555555556666666666666666665566666666666666666666665566666666666666666666543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.73  E-value=7.2e-19  Score=199.95  Aligned_cols=215  Identities=22%  Similarity=0.173  Sum_probs=106.8

Q ss_pred             HHhHHHHHHHHhcCCCC-CCCCCCC--CCCCCCCCCceeecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCc
Q 005711           41 LEDKASLLLFKSLVQDP-TQKLSSW--VGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNA  117 (681)
Q Consensus        41 ~~~~~~l~~~~~~~~~~-~~~~~~w--~~~~cc~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~  117 (681)
                      ..++++++++......+ ...-..|  .....+.|.++.++  ..++++|+|..+.+... +..+     |+.++|+.|.
T Consensus       131 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--~~~~~~l~L~~n~~~~~-~~~~-----l~~l~Ls~~~  202 (727)
T 4b8c_D          131 DCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVS--TPLTPKIELFANGKDEA-NQAL-----LQHKKLSQYS  202 (727)
T ss_dssp             -CCCHHHHHHHHHHHHHHTTC-----------------------------------------------------------
T ss_pred             ccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceec--CCccceEEeeCCCCCcc-hhhH-----hhcCccCccc
Confidence            45566888887765432 2233456  23456779888875  47899999998887753 3333     3334444444


Q ss_pred             CCc---------cccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEcc
Q 005711          118 FTG---------RISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFS  188 (681)
Q Consensus       118 l~~---------~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~  188 (681)
                      +.+         ..+..|..++.|++|+|++|.+. .+|..+.++++|++|+|++|.+ . .+|..++++ ++|++|+|+
T Consensus       203 i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l-~-~lp~~~~~l-~~L~~L~Ls  278 (727)
T 4b8c_D          203 IDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSL-T-ELPAEIKNL-SNLRVLDLS  278 (727)
T ss_dssp             -------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCC-S-CCCGGGGGG-TTCCEEECT
T ss_pred             ccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcC-c-ccChhhhCC-CCCCEEeCc
Confidence            332         35777889999999999999988 6787788899999999999954 3 788888888 889999999


Q ss_pred             CCcCccccCccccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChh
Q 005711          189 FNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTC  268 (681)
Q Consensus       189 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~  268 (681)
                      +|.++ .+|..++++++|++|+|++|.++                      .+|..++.+++|++|+|++|.+++.+|..
T Consensus       279 ~N~l~-~lp~~~~~l~~L~~L~L~~N~l~----------------------~lp~~~~~l~~L~~L~L~~N~l~~~~p~~  335 (727)
T 4b8c_D          279 HNRLT-SLPAELGSCFQLKYFYFFDNMVT----------------------TLPWEFGNLCNLQFLGVEGNPLEKQFLKI  335 (727)
T ss_dssp             TSCCS-SCCSSGGGGTTCSEEECCSSCCC----------------------CCCSSTTSCTTCCCEECTTSCCCSHHHHH
T ss_pred             CCcCC-ccChhhcCCCCCCEEECCCCCCC----------------------ccChhhhcCCCccEEeCCCCccCCCChHH
Confidence            99988 77888888888888888887775                      33444455555555555555555555444


Q ss_pred             hcccCc-ccEEecCCCccccccC
Q 005711          269 IASLQA-LTHLNLSHNHLNYEIS  290 (681)
Q Consensus       269 l~~l~~-L~~L~L~~n~l~~~~~  290 (681)
                      +..+.. +..+++++|.+++.+|
T Consensus       336 ~~~~~~~~~~l~l~~N~l~~~~p  358 (727)
T 4b8c_D          336 LTEKSVTGLIFYLRDNRPEIPLP  358 (727)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCCCC
T ss_pred             HhhcchhhhHHhhccCcccCcCc
Confidence            433211 1123444454444444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.73  E-value=1.8e-17  Score=173.22  Aligned_cols=175  Identities=26%  Similarity=0.239  Sum_probs=101.8

Q ss_pred             EEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCccccc-CCCCCCEEeccCCccccccccccCCCCCCCEEEc
Q 005711          301 LLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKIT-ELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDL  379 (681)
Q Consensus       301 ~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  379 (681)
                      .++++++.++ .+|..+..     .++.|++++|++++..+..+. .+++|++|+|++|++++..+..|.++++|++|++
T Consensus        22 ~l~c~~~~l~-~iP~~~~~-----~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L   95 (361)
T 2xot_A           22 ILSCSKQQLP-NVPQSLPS-----YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL   95 (361)
T ss_dssp             EEECCSSCCS-SCCSSCCT-----TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             EEEeCCCCcC-ccCccCCC-----CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence            4555555554 34443322     466666666666655555555 6666777777777666655566666666777777


Q ss_pred             cCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceecccccc---CCCCCCcEEECCCCcC
Q 005711          380 SHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTL---AGLKSLEIVDFSSNNL  456 (681)
Q Consensus       380 s~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~---~~l~~L~~L~L~~n~l  456 (681)
                      ++|.+++..+..|..+++|+.|++++|.+.+..+..|..+++|+.|+|++|.+++..+..+   ..+++|+.|+|++|++
T Consensus        96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l  175 (361)
T 2xot_A           96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL  175 (361)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred             CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence            7666665555555556666666666666655555556666666666666666664333333   3456666666666666


Q ss_pred             CCcchhhhhcCCC--CCEEEccCCcCc
Q 005711          457 SGSLNDAITKWTN--LKYFSIARNKLS  481 (681)
Q Consensus       457 ~~~~~~~~~~l~~--L~~L~L~~n~l~  481 (681)
                      ++..+..+..++.  ++.|++++|.+.
T Consensus       176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          176 KKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CccCHHHhhhccHhhcceEEecCCCcc
Confidence            6544455555554  255666666554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.73  E-value=1.7e-17  Score=167.76  Aligned_cols=190  Identities=20%  Similarity=0.289  Sum_probs=124.0

Q ss_pred             ccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeeccc
Q 005711          326 LVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNN  405 (681)
Q Consensus       326 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~  405 (681)
                      +..+.+..+.+++..+  +..+++|+.|++++|.+... + .+..+++|++|++++|.+++..+  +..+++        
T Consensus        26 ~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~--------   91 (291)
T 1h6t_A           26 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKN--------   91 (291)
T ss_dssp             HHHHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTT--------
T ss_pred             HHHHHhcCCCcccccc--hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCC--------
Confidence            4445566676664432  45678999999999998754 3 48889999999999999886433  444444        


Q ss_pred             ccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCC
Q 005711          406 NNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLP  485 (681)
Q Consensus       406 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p  485 (681)
                                      |+.|++++|.+++ ++ .+..+++|++|++++|++++.  ..+..+++|++|++++|++++.  
T Consensus        92 ----------------L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--  149 (291)
T 1h6t_A           92 ----------------LGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--  149 (291)
T ss_dssp             ----------------CCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--
T ss_pred             ----------------CCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--
Confidence                            4555555554443 12 255555666666666655542  2455566666666666666542  


Q ss_pred             cccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCCcCCCCCCCEEECCC
Q 005711          486 NWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSH  565 (681)
Q Consensus       486 ~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L~Ls~  565 (681)
                      ..+..+++|+.|++++|++.+                  ++. +..+++|+.|++++|++++ +|.+..+++|+.|++++
T Consensus       150 ~~l~~l~~L~~L~L~~N~l~~------------------~~~-l~~l~~L~~L~L~~N~i~~-l~~l~~l~~L~~L~l~~  209 (291)
T 1h6t_A          150 TVLSRLTKLDTLSLEDNQISD------------------IVP-LAGLTKLQNLYLSKNHISD-LRALAGLKNLDVLELFS  209 (291)
T ss_dssp             GGGGGCTTCSEEECCSSCCCC------------------CGG-GTTCTTCCEEECCSSCCCB-CGGGTTCTTCSEEEEEE
T ss_pred             hhhccCCCCCEEEccCCcccc------------------chh-hcCCCccCEEECCCCcCCC-ChhhccCCCCCEEECcC
Confidence            345556666666655555542                  222 6677788888888888874 56677888888888888


Q ss_pred             CcCccc
Q 005711          566 NSLTGQ  571 (681)
Q Consensus       566 N~l~~~  571 (681)
                      |.++..
T Consensus       210 n~i~~~  215 (291)
T 1h6t_A          210 QECLNK  215 (291)
T ss_dssp             EEEECC
T ss_pred             CcccCC
Confidence            888753

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.72  E-value=4.1e-17  Score=170.52  Aligned_cols=178  Identities=22%  Similarity=0.158  Sum_probs=153.7

Q ss_pred             ccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccC-CCCCCCEEEccCCcCccccCcccccCCCcceeecc
Q 005711          326 LVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIG-NLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVN  404 (681)
Q Consensus       326 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~  404 (681)
                      -+.++++++.++ .+|..+.  +.++.|+|++|++++..+..+. ++++|++|++++|.+++..+..|..+++|+.|+++
T Consensus        20 ~~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           20 SNILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TTEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            468999999998 5776554  4689999999999988877787 89999999999999998888889999999999999


Q ss_pred             cccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhh---hcCCCCCEEEccCCcCc
Q 005711          405 NNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAI---TKWTNLKYFSIARNKLS  481 (681)
Q Consensus       405 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~  481 (681)
                      +|.+.+..+..|..+++|+.|+|++|.+++..|..|.++++|++|+|++|++++..+..+   ..+++|++|+|++|+++
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence            999998888889999999999999999998888999999999999999999997555555   57899999999999998


Q ss_pred             ccCCcccccCCc--cceeecccCcccc
Q 005711          482 GNLPNWLFSFQA--IQMMDFSTNKFMG  506 (681)
Q Consensus       482 ~~~p~~~~~l~~--L~~L~ls~n~~~~  506 (681)
                      +..+..+..++.  ++.|++++|.+..
T Consensus       177 ~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          177 KLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             CCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             ccCHHHhhhccHhhcceEEecCCCccC
Confidence            655566777776  4788999888764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=1.7e-17  Score=183.98  Aligned_cols=190  Identities=18%  Similarity=0.287  Sum_probs=141.1

Q ss_pred             CCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEE
Q 005711          298 KLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVI  377 (681)
Q Consensus       298 ~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  377 (681)
                      .+..+.+..+.+.+..+  +..+.   .|+.|++++|.+.. +| .+..+++|+.|+|++|.+.+..+  +..+++|+.|
T Consensus        22 ~l~~l~l~~~~i~~~~~--~~~L~---~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L   92 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVT--QNELN---SIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWL   92 (605)
T ss_dssp             HHHHHHTTCSCTTSEEC--HHHHT---TCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEE
T ss_pred             HHHHHhccCCCcccccc--hhcCC---CCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEE
Confidence            44555666666654333  23344   78888898888874 44 47788889999999988886554  7888889999


Q ss_pred             EccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCC
Q 005711          378 DLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLS  457 (681)
Q Consensus       378 ~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~  457 (681)
                      +|++|.+.+ +| .+..+++|+.|++++|.+.+.  ..+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.++
T Consensus        93 ~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~  166 (605)
T 1m9s_A           93 FLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS  166 (605)
T ss_dssp             ECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred             ECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence            998888875 33 677788888888888888763  3467788888888888888764  56777888888888888887


Q ss_pred             CcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCcccc
Q 005711          458 GSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMG  506 (681)
Q Consensus       458 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~  506 (681)
                      +..|  +..+++|+.|+|++|.+++.  +.+..+++|+.|++++|++.+
T Consensus       167 ~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          167 DIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             CCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred             Cchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence            6655  77788888888888888753  347777778888777777664

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.72  E-value=7.4e-20  Score=201.72  Aligned_cols=201  Identities=17%  Similarity=0.139  Sum_probs=112.7

Q ss_pred             CCCCCCEEeccCCccccccccccCCCCCCCEEEccCCc-------------CccccCcccccCCCcceee-ccccccccc
Q 005711          346 ELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNM-------------LSGSIPLNIVGCFQLLALI-VNNNNLSGE  411 (681)
Q Consensus       346 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-------------l~~~~p~~~~~~~~L~~L~-l~~n~l~~~  411 (681)
                      .++.|+.|+|++|++. .+|..++++++|+.|++++|.             ..+..|..+..+++|+.|+ ++.|.+   
T Consensus       347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~---  422 (567)
T 1dce_A          347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL---  422 (567)
T ss_dssp             TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH---
T ss_pred             cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc---
Confidence            3455555555555554 455555555555555554443             3344444455555555554 333322   


Q ss_pred             CccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccC
Q 005711          412 IQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSF  491 (681)
Q Consensus       412 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l  491 (681)
                              ..|+.+.+++|.++...+      ..|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+..+
T Consensus       423 --------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  485 (567)
T 1dce_A          423 --------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAAL  485 (567)
T ss_dssp             --------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGC
T ss_pred             --------chhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcC
Confidence                    123334444454443221      236677777777764 454 666777777777777766 566666666


Q ss_pred             CccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccC-CC-cCCCCCCCEEECCCCcCc
Q 005711          492 QAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQV-PG-LYRLRSLRALDLSHNSLT  569 (681)
Q Consensus       492 ~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~i-p~-~~~l~~L~~L~Ls~N~l~  569 (681)
                      ++|+.|++++|+++                  .+| .++++++|+.|+|++|++++.+ |. ++.+++|+.|+|++|.++
T Consensus       486 ~~L~~L~Ls~N~l~------------------~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~  546 (567)
T 1dce_A          486 RCLEVLQASDNALE------------------NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  546 (567)
T ss_dssp             TTCCEEECCSSCCC------------------CCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCCEEECCCCCCC------------------CCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence            66666665555544                  234 5566666666666666666654 55 666666666666666666


Q ss_pred             ccCCcc---ccCCCCCCeEe
Q 005711          570 GQIPGN---ISSLQELTLLN  586 (681)
Q Consensus       570 ~~~p~~---l~~l~~L~~L~  586 (681)
                      +.+|..   +..+++|+.||
T Consensus       547 ~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          547 QEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             GSSSCTTHHHHHCTTCSEEE
T ss_pred             CCccHHHHHHHHCcccCccC
Confidence            554432   22356666665

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.71  E-value=4.7e-20  Score=203.29  Aligned_cols=217  Identities=24%  Similarity=0.170  Sum_probs=132.5

Q ss_pred             cCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCCcCccccCccccCCCCC
Q 005711          127 GGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSL  206 (681)
Q Consensus       127 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L  206 (681)
                      ..+++|+.|+|++|+++ .+|..++++++|++|++++| .....+|..+            ..+...+.+|..++++++|
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n-~~l~~l~~ll------------~~~~~~~~~~~~l~~l~~L  411 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENK-WCLLTIILLM------------RALDPLLYEKETLQYFSTL  411 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCH-HHHHHHHHHH------------HHHCTGGGHHHHHHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccc-hhhhhHHHHH------------HhcccccCCHHHHHHHHhc
Confidence            57888888999988887 77888888889998888766 2101111110            1122334555666666666


Q ss_pred             CEEE-ccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCcc
Q 005711          207 KHLD-LEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHL  285 (681)
Q Consensus       207 ~~L~-L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  285 (681)
                      +.|+ ++.|.+.        +|+.+.+.+|.++...+      ..|+.|++++|.+++ +|. ++.+++|+.|++++|.+
T Consensus       412 ~~L~~l~~n~~~--------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l  475 (567)
T 1dce_A          412 KAVDPMRAAYLD--------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRL  475 (567)
T ss_dssp             HHHCGGGHHHHH--------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCC
T ss_pred             ccCcchhhcccc--------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCcccc
Confidence            6666 4444332        12222233333221111      136666666666664 454 66667777777777776


Q ss_pred             ccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCC-cccccCCCCCCEEeccCCcccccc
Q 005711          286 NYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEI-PLKITELKSLQALFLSNNLLIGEI  364 (681)
Q Consensus       286 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~  364 (681)
                      + .+|..++.+++|+.|+|++|.+++ +| .++.+.   +|+.|++++|++++.. |..+..+++|+.|++++|.+++..
T Consensus       476 ~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~---~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~  549 (567)
T 1dce_A          476 R-ALPPALAALRCLEVLQASDNALEN-VD-GVANLP---RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE  549 (567)
T ss_dssp             C-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCS---SCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             c-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCC---CCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence            6 566667777777777777777765 45 454444   6777777777777665 777777777777777777777654


Q ss_pred             ccc---cCCCCCCCEEEc
Q 005711          365 PAR---IGNLTYLQVIDL  379 (681)
Q Consensus       365 ~~~---l~~l~~L~~L~L  379 (681)
                      |..   +..+++|+.|++
T Consensus       550 ~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          550 GIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SCTTHHHHHCTTCSEEEC
T ss_pred             cHHHHHHHHCcccCccCC
Confidence            421   223677777754

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.70  E-value=2.7e-17  Score=163.64  Aligned_cols=170  Identities=19%  Similarity=0.277  Sum_probs=120.6

Q ss_pred             CCCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEE
Q 005711          395 CFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFS  474 (681)
Q Consensus       395 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  474 (681)
                      +.++..++++++.+.+..  .+..+++|+.|++++|.++. ++ .+..+++|++|++++|++++..+  +..+++|++|+
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~   91 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred             HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence            334555556666555433  35566777777777777763 44 56677777777777777775444  77777788888


Q ss_pred             ccCCcCcccCCcccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCCcCC
Q 005711          475 IARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYR  554 (681)
Q Consensus       475 L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~  554 (681)
                      +++|++++ +|....  ++|+.|++++|+++                  .+| .+..+++|+.|++++|++++ +|.+..
T Consensus        92 L~~N~l~~-l~~~~~--~~L~~L~L~~N~l~------------------~~~-~l~~l~~L~~L~Ls~N~i~~-~~~l~~  148 (263)
T 1xeu_A           92 VNRNRLKN-LNGIPS--ACLSRLFLDNNELR------------------DTD-SLIHLKNLEILSIRNNKLKS-IVMLGF  148 (263)
T ss_dssp             CCSSCCSC-CTTCCC--SSCCEEECCSSCCS------------------BSG-GGTTCTTCCEEECTTSCCCB-CGGGGG
T ss_pred             CCCCccCC-cCcccc--CcccEEEccCCccC------------------CCh-hhcCcccccEEECCCCcCCC-ChHHcc
Confidence            88887764 333222  56666666666554                  223 47788899999999999885 466888


Q ss_pred             CCCCCEEECCCCcCcccCCccccCCCCCCeEecccCcceee
Q 005711          555 LRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGF  595 (681)
Q Consensus       555 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~  595 (681)
                      +++|+.|++++|++++.  ..+..+++|+.|++++|++++.
T Consensus       149 l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          149 LSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             CTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             CCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            89999999999999876  5688889999999999998765

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.70  E-value=3.5e-17  Score=154.62  Aligned_cols=154  Identities=19%  Similarity=0.265  Sum_probs=102.5

Q ss_pred             cEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCc-ccccCCccceeecccCccccCCCCCcccccCCccccccC
Q 005711          447 EIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPN-WLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTI  525 (681)
Q Consensus       447 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~i  525 (681)
                      +++++++|.++ .+|..+.  .++++|++++|.+++..+. .+..+++|+.|++++|+++                 +..
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~-----------------~~~   70 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-----------------GIE   70 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-----------------CBC
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCC-----------------CcC
Confidence            34555555553 3333222  2555556666655543332 2455555555555544443                 245


Q ss_pred             CcccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccCcceeeCCCCCCCCC
Q 005711          526 PKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQK  604 (681)
Q Consensus       526 p~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~  604 (681)
                      |..+.++++|++|+|++|++++..|. +..+++|+.|+|++|++++.+|..+..+++|++|++++|++.|.++..+....
T Consensus        71 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~  150 (192)
T 1w8a_A           71 PNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEW  150 (192)
T ss_dssp             TTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHH
T ss_pred             HhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHH
Confidence            67778888999999999999988877 88899999999999999999999999999999999999999988874332111


Q ss_pred             ccc-cccCCCCCCCCCC
Q 005711          605 FPG-AFAGNPNLCLESS  620 (681)
Q Consensus       605 ~~~-~~~gn~~lc~~~~  620 (681)
                      +.. .+.++...|+.|.
T Consensus       151 l~~~~~~~~~~~C~~P~  167 (192)
T 1w8a_A          151 LRKKSLNGGAARCGAPS  167 (192)
T ss_dssp             HHHHCCSGGGCBBCSST
T ss_pred             HHHcCCCCCCCCCCCCh
Confidence            212 3455555666553

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.70  E-value=4.4e-17  Score=154.70  Aligned_cols=155  Identities=15%  Similarity=0.262  Sum_probs=102.9

Q ss_pred             CCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccce
Q 005711          417 DALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQM  496 (681)
Q Consensus       417 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  496 (681)
                      ..+++|+.|++++|.+. .+| .+..+++|++|++++|.++.  +..+..+++|++|++++|.+++..|..+..+++|+.
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            34556666777766666 344 46666677777777775542  235666777777777777776666666666666666


Q ss_pred             eecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCCcCCCCCCCEEECCCCcCcccCCccc
Q 005711          497 MDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNI  576 (681)
Q Consensus       497 L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L~Ls~N~l~~~~p~~l  576 (681)
                      |++++|++++                 ..|..+..+++|++|++++|++.+.+|.+..+++|+.|++++|++++ ++ .+
T Consensus       117 L~Ls~n~i~~-----------------~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~-~~-~l  177 (197)
T 4ezg_A          117 LDISHSAHDD-----------------SILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD-YR-GI  177 (197)
T ss_dssp             EECCSSBCBG-----------------GGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC-CT-TG
T ss_pred             EEecCCccCc-----------------HhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcC-hH-Hh
Confidence            6666555442                 45566777788888888888733356667778888888888888875 33 67


Q ss_pred             cCCCCCCeEecccCccee
Q 005711          577 SSLQELTLLNLSYNSFSG  594 (681)
Q Consensus       577 ~~l~~L~~L~ls~N~l~~  594 (681)
                      ..+++|++|++++|++.+
T Consensus       178 ~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          178 EDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             GGCSSCCEEEECBC----
T ss_pred             ccCCCCCEEEeeCcccCC
Confidence            778888888888888653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.68  E-value=2.2e-16  Score=149.80  Aligned_cols=107  Identities=18%  Similarity=0.276  Sum_probs=64.5

Q ss_pred             cCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccE
Q 005711          345 TELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKI  424 (681)
Q Consensus       345 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  424 (681)
                      ..+++|++|++++|.++ .+| .+..+++|++|++++|.++.  +                        ..+..+++|++
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~------------------------~~l~~l~~L~~   92 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--Y------------------------NPISGLSNLER   92 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--C------------------------GGGTTCTTCCE
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--c------------------------hhhhcCCCCCE
Confidence            44566677777777665 334 46666666666666664431  1                        13445566666


Q ss_pred             EEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCc
Q 005711          425 LDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNK  479 (681)
Q Consensus       425 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  479 (681)
                      |++++|.+++..+..++.+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus        93 L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~  147 (197)
T 4ezg_A           93 LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG  147 (197)
T ss_dssp             EEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred             EEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence            6666666665555666666666666666666665555566666666666666665

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.66  E-value=3.2e-17  Score=186.39  Aligned_cols=142  Identities=23%  Similarity=0.285  Sum_probs=75.1

Q ss_pred             cccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCC
Q 005711          364 IPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGL  443 (681)
Q Consensus       364 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l  443 (681)
                      .+..+..++.|+.|+|++|.+. .+|..+..+++|+.|++++|.++ .+|..+..+++|+.|+|++|.++ .+|..+.++
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  292 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC  292 (727)
T ss_dssp             ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred             ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence            3444555556666666666555 45555555555555555555555 45555555666666666666665 455555666


Q ss_pred             CCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCc-cceeecccCccccCCC
Q 005711          444 KSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQA-IQMMDFSTNKFMGFIP  509 (681)
Q Consensus       444 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~-L~~L~ls~n~~~~~~p  509 (681)
                      ++|++|+|++|.++ .+|..+..+++|++|+|++|.+++.+|..+..... ...+++++|.++|.+|
T Consensus       293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p  358 (727)
T 4b8c_D          293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP  358 (727)
T ss_dssp             TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred             CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence            66666666666554 44555556666666666666666555554433221 1124445555544444

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.66  E-value=1.8e-16  Score=157.66  Aligned_cols=145  Identities=23%  Similarity=0.357  Sum_probs=73.2

Q ss_pred             CccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecc
Q 005711          325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVN  404 (681)
Q Consensus       325 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~  404 (681)
                      +|+.|++++|.++ .+| .+..+++|++|++++|++++..+  +.++++|++|++++|++++ +|... . ++|+.|+++
T Consensus        42 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~~-~-~~L~~L~L~  114 (263)
T 1xeu_A           42 GVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGIP-S-ACLSRLFLD  114 (263)
T ss_dssp             TCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTCC-C-SSCCEEECC
T ss_pred             cCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCccc-c-CcccEEEcc
Confidence            4444455544444 223 34445555555555555543322  4555555555555555543 22111 1 344444444


Q ss_pred             cccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcc
Q 005711          405 NNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSG  482 (681)
Q Consensus       405 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  482 (681)
                      +|.+++.  ..+..+++|+.|++++|++++. + .+..+++|++|++++|++++.  ..+..+++|++|++++|.+.+
T Consensus       115 ~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          115 NNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             SSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred             CCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence            4444432  1345556666666666666543 2 455566666666666666544  445556666666666666553

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.64  E-value=6e-16  Score=146.07  Aligned_cols=155  Identities=23%  Similarity=0.243  Sum_probs=102.0

Q ss_pred             cEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchh-hhhcCCCCCEEEccCCcCcccCCcccccCCccceeeccc
Q 005711          423 KILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLND-AITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFST  501 (681)
Q Consensus       423 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~  501 (681)
                      +.+++++|.++ .+|..+.  .++++|++++|++++..+. .+..+++|++|++++|++++..|..+..+++|+.|++++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            55666666664 4554433  2667777777777655443 366777777777777777766666677777777666666


Q ss_pred             CccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCC
Q 005711          502 NKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQ  580 (681)
Q Consensus       502 n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  580 (681)
                      |++++                 ..|..+.++++|++|+|++|++++.+|. +..+++|+.|++++|.+++..+... -..
T Consensus        88 N~l~~-----------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~-~~~  149 (192)
T 1w8a_A           88 NKIKE-----------------ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAE  149 (192)
T ss_dssp             CCCCE-----------------ECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHH
T ss_pred             CcCCc-----------------cCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchH-HHH
Confidence            65543                 4455677788899999999999888887 8888999999999999987765211 001


Q ss_pred             CCCeEecccCcceeeCCC
Q 005711          581 ELTLLNLSYNSFSGFVPW  598 (681)
Q Consensus       581 ~L~~L~ls~N~l~~~~p~  598 (681)
                      .++...+..+...|..|.
T Consensus       150 ~l~~~~~~~~~~~C~~P~  167 (192)
T 1w8a_A          150 WLRKKSLNGGAARCGAPS  167 (192)
T ss_dssp             HHHHHCCSGGGCBBCSST
T ss_pred             HHHHcCCCCCCCCCCCCh
Confidence            122223445555555553

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.62  E-value=6e-16  Score=159.56  Aligned_cols=260  Identities=12%  Similarity=0.064  Sum_probs=131.0

Q ss_pred             CCCCCEEEccCccCc--ccccCcCCcccEEECCCCCCccccchhhcc--------CCCCCEEEccCCccccCCChhhccc
Q 005711          203 LKSLKHLDLEKNNLT--GNVHDFYQSLLVLNLGSNRFSGTLPCFAAS--------AMSLTVLKLDNNSVVGGIPTCIASL  272 (681)
Q Consensus       203 l~~L~~L~L~~n~l~--~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~--------~~~L~~L~L~~n~l~~~~p~~l~~l  272 (681)
                      +++|++|||++|.+.  ......+..++.+.+..|.+   .+..|.+        +++|+.|++.+ .++...+.+|.++
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I---~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~  123 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFV---PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGC  123 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEE---CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTC
T ss_pred             hccCeEEecCcceeEEecCcccccccccccccccccc---CHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcC
Confidence            566666666666665  22222333333333333321   1233444        78888888877 6666666677778


Q ss_pred             CcccEEecCCCccccccCccccCCCCCcEEeccCCCc----cCCCChhhhhcccCCCcc-EEEccCCCCcCCCcccc---
Q 005711          273 QALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDL----SGPLPSKIAQTTEKAGLV-LLDLSHNRFSGEIPLKI---  344 (681)
Q Consensus       273 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l----~~~~p~~~~~~~~~~~L~-~L~Ls~n~l~~~~p~~l---  344 (681)
                      ++|+.+++.+|.+....+..|..+.++..+....+..    .......+..+.   .|+ .+.+....   .++..+   
T Consensus       124 ~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~---~L~~~i~~~~~~---~l~~~~~~~  197 (329)
T 3sb4_A          124 DNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE---PLETTIQVGAMG---KLEDEIMKA  197 (329)
T ss_dssp             TTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC---CCEEEEEECTTC---CHHHHHHHT
T ss_pred             cccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccc---ccceeEEecCCC---cHHHHHhhc
Confidence            8888888888777655566666666666655544211    000011111111   233 22222211   111111   


Q ss_pred             -cCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCcc
Q 005711          345 -TELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLK  423 (681)
Q Consensus       345 -~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  423 (681)
                       ....+++.+.+.++-...........+++|+.+++++|.++...+..|.+|.+|+.+++.+| +....+.+|.++++|+
T Consensus       198 ~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~  276 (329)
T 3sb4_A          198 GLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLA  276 (329)
T ss_dssp             TCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred             ccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhcc
Confidence             11234444444433211111110112556666666666655444445555666666666554 4444444566666666


Q ss_pred             -EEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEE
Q 005711          424 -ILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFS  474 (681)
Q Consensus       424 -~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  474 (681)
                       .+++.+ .++...+..|.+|++|+.+++++|+++...+.+|.++++|+.++
T Consensus       277 ~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          277 GTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence             666665 45544455666666666666666666655555666666666654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.60  E-value=7.8e-16  Score=158.71  Aligned_cols=289  Identities=13%  Similarity=0.070  Sum_probs=170.9

Q ss_pred             CCCCCEEEccCCCCCCcCCccccC-CCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCCcCccccCccccC-----
Q 005711          129 LSGLKTLDLSYNKFVGVVPDAIMK-LRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYY-----  202 (681)
Q Consensus       129 l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~-----  202 (681)
                      +.+++.|.++++ +....-..+.. +++|++|||++|++..-..+.  +.+ +.++.+.+..|.+   .+.+|.+     
T Consensus        24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~--~~~-~~~~~~~~~~~~I---~~~aF~~~~~~~   96 (329)
T 3sb4_A           24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKA--GTY-PNGKFYIYMANFV---PAYAFSNVVNGV   96 (329)
T ss_dssp             HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESS--SSS-GGGCCEEECTTEE---CTTTTEEEETTE
T ss_pred             hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcc--ccc-ccccccccccccc---CHHHhccccccc
Confidence            567788888764 22111122333 667777777777433000000  011 1223333333321   1223444     


Q ss_pred             ---CCCCCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChhhcccCcccEEe
Q 005711          203 ---LKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLN  279 (681)
Q Consensus       203 ---l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  279 (681)
                         +++|+.+++.+ .++                     ..-+.+|..+++|+.+++++|.+....+..|..+.++..+.
T Consensus        97 ~~g~~~L~~l~L~~-~i~---------------------~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~  154 (329)
T 3sb4_A           97 TKGKQTLEKVILSE-KIK---------------------NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIP  154 (329)
T ss_dssp             EEECTTCCC-CBCT-TCC---------------------EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEEC
T ss_pred             ccccCCCcEEECCc-ccc---------------------chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEec
Confidence               66666666665 444                     23345566777777777777776655566666666666665


Q ss_pred             cCCCcc----ccccCccccCCCCCc-EEeccCCCccCCCChhhhhc-ccCCCccEEEccCCCCcCCCcccccCCCCCCEE
Q 005711          280 LSHNHL----NYEISPRLVFFEKLL-LLDLSFNDLSGPLPSKIAQT-TEKAGLVLLDLSHNRFSGEIPLKITELKSLQAL  353 (681)
Q Consensus       280 L~~n~l----~~~~~~~l~~l~~L~-~L~L~~n~l~~~~p~~~~~~-~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  353 (681)
                      ...+..    .......+..+..|+ .+.+...   +.++..+... ....++..+.+.++-...........+++|+.+
T Consensus       155 ~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l  231 (329)
T 3sb4_A          155 LGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSL  231 (329)
T ss_dssp             TTCTHHHHTSTTTTTSCEEESCCCEEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEE
T ss_pred             CcchhhhhccccccccccccccccceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEE
Confidence            554221    111233345555665 4444332   1223322211 112245666665542221111111236788888


Q ss_pred             eccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcc-eeecccccccccCccccCCCCCccEEEcccCcc
Q 005711          354 FLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLL-ALIVNNNNLSGEIQPELDALDSLKILDISNNQI  432 (681)
Q Consensus       354 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  432 (681)
                      ++++|+++...+..|.++++|+.+++.+| +...-+..|.+|.+|+ .+.+.+ .+....+.+|.++++|+.+++++|.+
T Consensus       232 ~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i  309 (329)
T 3sb4_A          232 DISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKI  309 (329)
T ss_dssp             ECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCC
T ss_pred             ECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCcc
Confidence            88888888666777888888888888887 6656667788888888 888887 67666677889999999999999999


Q ss_pred             eeccccccCCCCCCcEEEC
Q 005711          433 SGEIPLTLAGLKSLEIVDF  451 (681)
Q Consensus       433 ~~~~p~~~~~l~~L~~L~L  451 (681)
                      +...+..|.++++|+.++.
T Consensus       310 ~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          310 TTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             CEECTTTTCTTCCCCEEEC
T ss_pred             CccchhhhcCCcchhhhcc
Confidence            8777788999999998864

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.60  E-value=2.1e-15  Score=142.30  Aligned_cols=130  Identities=23%  Similarity=0.301  Sum_probs=93.7

Q ss_pred             EEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccccCCCCCcccccCCccccccCCc
Q 005711          448 IVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPK  527 (681)
Q Consensus       448 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~  527 (681)
                      .+++++|.++ .+|..+  .++|++|++++|.++ .+|..+..+++|+.|++++|++++                 ..+.
T Consensus        14 ~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~-----------------i~~~   72 (193)
T 2wfh_A           14 VVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIST-----------------LSNQ   72 (193)
T ss_dssp             EEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCC-----------------CCTT
T ss_pred             EEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCE-----------------eCHh
Confidence            4555555544 233322  135566666666655 455555555666655555554442                 3445


Q ss_pred             ccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccCcceeeCCC
Q 005711          528 GLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPW  598 (681)
Q Consensus       528 ~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  598 (681)
                      .|.++++|++|+|++|++++..|. +..+++|+.|+|++|++++..+..|..+++|+.|++++|++.|.++.
T Consensus        73 ~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l  144 (193)
T 2wfh_A           73 SFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM  144 (193)
T ss_dssp             TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred             HccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence            677889999999999999987777 88999999999999999977777899999999999999999987753

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.59  E-value=2.1e-15  Score=139.14  Aligned_cols=68  Identities=28%  Similarity=0.165  Sum_probs=37.0

Q ss_pred             CcccccccccceeecCCCcCcccC--CCcCCCCCCCEEECCCCcCcccCC---ccccCCCCCCeEecccCcce
Q 005711          526 PKGLFQLQGLEYLNLSFNFLDGQV--PGLYRLRSLRALDLSHNSLTGQIP---GNISSLQELTLLNLSYNSFS  593 (681)
Q Consensus       526 p~~l~~l~~L~~L~Ls~N~l~~~i--p~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~ls~N~l~  593 (681)
                      |..+..+++|++|++++|++++..  +.+..+++|+.|++++|.+++..+   ..+..+++|++|++++|.+.
T Consensus        88 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           88 DMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             CHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             HHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            333444555555566665555432  225556666666666666664433   35555666666666666554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.59  E-value=2.2e-15  Score=138.96  Aligned_cols=134  Identities=23%  Similarity=0.176  Sum_probs=93.9

Q ss_pred             CcEEEEEcCCCCCc-ccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEee
Q 005711           82 GHVVSINLTDTSLS-GQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELI  160 (681)
Q Consensus        82 ~~v~~L~L~~~~l~-g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  160 (681)
                      .+++.|+++++.+. +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|++++.+|..+.++++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            45777777777776 66777777777778888877777765  5677777778888887777766777777777777777


Q ss_pred             CCCCCCCCccCCchhccccCCccEEEccCCcCccccC---ccccCCCCCCEEEccCccCcc
Q 005711          161 LKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIP---ESLYYLKSLKHLDLEKNNLTG  218 (681)
Q Consensus       161 L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~L~~n~l~~  218 (681)
                      +++|++..-..+..+..+ ++|++|++++|.+++..+   ..+..+++|++|++++|.+..
T Consensus       102 Ls~N~l~~~~~~~~l~~l-~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKL-ECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSC-SCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             ccCCccCcchhHHHHhcC-CCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            777744221222556666 677777777777774433   367777777777777776653

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=1.8e-15  Score=136.58  Aligned_cols=128  Identities=24%  Similarity=0.178  Sum_probs=91.4

Q ss_pred             CcEEEEEcCCCCCc-ccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEee
Q 005711           82 GHVVSINLTDTSLS-GQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELI  160 (681)
Q Consensus        82 ~~v~~L~L~~~~l~-g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  160 (681)
                      .+++.|+++++.+. +.+|..+..+++|++|++++|.+++.  ..++++++|++|++++|.+++.+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            45777788888777 67777777778888888888877765  5677778888888888887766777777777788888


Q ss_pred             CCCCCCCCccCCchhccccCCccEEEccCCcCccccC---ccccCCCCCCEEEcc
Q 005711          161 LKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIP---ESLYYLKSLKHLDLE  212 (681)
Q Consensus       161 L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~L~  212 (681)
                      +++|++.....+..+..+ ++|++|++++|.+++..+   ..+..+++|++|+++
T Consensus        95 ls~N~i~~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKL-ENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGC-TTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCcCCChHHHHHHhhC-CCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            877743221234566666 677777777777775444   356777777777765

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.55  E-value=2.4e-14  Score=133.24  Aligned_cols=131  Identities=21%  Similarity=0.219  Sum_probs=89.0

Q ss_pred             cEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccccCCCCCcccccCCccccccCC
Q 005711          447 EIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIP  526 (681)
Q Consensus       447 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip  526 (681)
                      +.+++++|.++. +|..+  .++|++|++++|++++..+..+..+++|+.|++++|++++                 ..+
T Consensus        10 ~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------------~~~   69 (177)
T 2o6r_A           10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS-----------------LPD   69 (177)
T ss_dssp             TEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-----------------CCT
T ss_pred             CEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE-----------------eCh
Confidence            344455554442 22221  2455555555555554434444555555555555554432                 233


Q ss_pred             cccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccCcceeeCC
Q 005711          527 KGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVP  597 (681)
Q Consensus       527 ~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p  597 (681)
                      ..+..+++|++|++++|++++..+. +..+++|+.|++++|++++..+..+..+++|++|++++|++.|.+|
T Consensus        70 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           70 GVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             hHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            4467788999999999999977776 7889999999999999997777677889999999999999998876

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.55  E-value=1.3e-14  Score=130.84  Aligned_cols=127  Identities=19%  Similarity=0.264  Sum_probs=77.9

Q ss_pred             CCCCEEeccCCccc-cccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEE
Q 005711          348 KSLQALFLSNNLLI-GEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILD  426 (681)
Q Consensus       348 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  426 (681)
                      ++|+.|++++|.++ +.+|..+..+++|++|++++|.+++.                          ..+..+++|+.|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--------------------------~~~~~l~~L~~L~   70 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--------------------------ANLPKLNKLKKLE   70 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--------------------------TTCCCCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--------------------------hhhhcCCCCCEEE
Confidence            55666666666665 55666666666666666666666543                          2344556666666


Q ss_pred             cccCcceeccccccCCCCCCcEEECCCCcCCCc-chhhhhcCCCCCEEEccCCcCcccCC---cccccCCccceeecc
Q 005711          427 ISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGS-LNDAITKWTNLKYFSIARNKLSGNLP---NWLFSFQAIQMMDFS  500 (681)
Q Consensus       427 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p---~~~~~l~~L~~L~ls  500 (681)
                      +++|.+++.+|..+..+++|++|++++|++++. .+..+..+++|++|++++|.+++..+   ..+..+++|+.||++
T Consensus        71 Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           71 LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            666666655555555566666666666666642 23556666666666666666665443   355666666666654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.51  E-value=1.7e-13  Score=127.42  Aligned_cols=131  Identities=22%  Similarity=0.169  Sum_probs=67.6

Q ss_pred             ccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeeccc
Q 005711          326 LVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNN  405 (681)
Q Consensus       326 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~  405 (681)
                      .+.+++++++++ .+|..+  .++|++|++++|++++..+..+.++++|++|++++|.+++..+..+..+++|+.|++++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            345566666655 334322  24566666666666655555556666666666666666544333344444444444444


Q ss_pred             ccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCc
Q 005711          406 NNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGS  459 (681)
Q Consensus       406 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~  459 (681)
                      |.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            444443333344455555555555555543333344455555555555555443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.50  E-value=1.6e-13  Score=129.30  Aligned_cols=125  Identities=27%  Similarity=0.378  Sum_probs=55.5

Q ss_pred             EEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeeccccc
Q 005711          328 LLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNN  407 (681)
Q Consensus       328 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~  407 (681)
                      .+++++|.++ .+|..+.  ++|++|++++|.++ .+|..+.++++|++|++++|.+++..+..|.++++|++|++++|.
T Consensus        14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            4455555544 3343322  34555555555554 334445555555555555555544333333333333333333333


Q ss_pred             ccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcC
Q 005711          408 LSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNL  456 (681)
Q Consensus       408 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l  456 (681)
                      +++..+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|.+
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            3333333344444444444444444433333344444444444444444

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.47  E-value=3.6e-12  Score=134.65  Aligned_cols=329  Identities=12%  Similarity=0.034  Sum_probs=168.4

Q ss_pred             ccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhcccc
Q 005711          100 PRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFS  179 (681)
Q Consensus       100 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~  179 (681)
                      .+|.++++|+++.+.. .++.+-..+|.+|++|+.+++..+ ++.....+|.++++|+.+.+..+ . ...-...+... 
T Consensus        65 ~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l-~~i~~~aF~~~-  139 (394)
T 4fs7_A           65 AAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-L-KSIGVEAFKGC-  139 (394)
T ss_dssp             TTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-C-CEECTTTTTTC-
T ss_pred             HHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-e-eeecceeeecc-
Confidence            4577788888888874 466555677888888888888754 55455667888888877766544 1 11111122222 


Q ss_pred             CCccEEEccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCC
Q 005711          180 MNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNN  259 (681)
Q Consensus       180 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n  259 (681)
                       .+....... .....-..+|.++++|+.+.+..+...                      .....|.++.+|+.+++..+
T Consensus       140 -~~~~~~~~~-~~~~i~~~aF~~c~~L~~i~l~~~~~~----------------------I~~~~F~~c~~L~~i~l~~~  195 (394)
T 4fs7_A          140 -DFKEITIPE-GVTVIGDEAFATCESLEYVSLPDSMET----------------------LHNGLFSGCGKLKSIKLPRN  195 (394)
T ss_dssp             -CCSEEECCT-TCCEECTTTTTTCTTCCEEECCTTCCE----------------------ECTTTTTTCTTCCBCCCCTT
T ss_pred             -cccccccCc-cccccchhhhcccCCCcEEecCCccce----------------------eccccccCCCCceEEEcCCC
Confidence             111111111 111122234555555555554332110                      11223334444444444332


Q ss_pred             ccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCC
Q 005711          260 SVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGE  339 (681)
Q Consensus       260 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~  339 (681)
                       ++......                        +..+..|+.+.+..+...  +.......   .+|+.+.+.... +..
T Consensus       196 -~~~I~~~~------------------------F~~~~~L~~i~~~~~~~~--i~~~~~~~---~~l~~i~ip~~~-~~i  244 (394)
T 4fs7_A          196 -LKIIRDYC------------------------FAECILLENMEFPNSLYY--LGDFALSK---TGVKNIIIPDSF-TEL  244 (394)
T ss_dssp             -CCEECTTT------------------------TTTCTTCCBCCCCTTCCE--ECTTTTTT---CCCCEEEECTTC-CEE
T ss_pred             -ceEeCchh------------------------hccccccceeecCCCceE--eehhhccc---CCCceEEECCCc-eec
Confidence             22122223                        333444444433332211  01111111   145555444321 212


Q ss_pred             CcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCC
Q 005711          340 IPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDAL  419 (681)
Q Consensus       340 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l  419 (681)
                      -...+..+..++.+.+..+... .....|.++..++.+....+.+   ....+..+.+|+.+.+..+ +...-..+|.++
T Consensus       245 ~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c  319 (394)
T 4fs7_A          245 GKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESC  319 (394)
T ss_dssp             CSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTC
T ss_pred             ccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCC
Confidence            2234555666666666555332 3344556666666666554432   2234556666666666543 333344556777


Q ss_pred             CCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCcccee
Q 005711          420 DSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMM  497 (681)
Q Consensus       420 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  497 (681)
                      .+|+.+++.++ ++..-..+|.+|.+|+.+++..+ ++..-..+|.+|++|+.+++..+- . .+...+.++++|+.+
T Consensus       320 ~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~-~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          320 TSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRL-E-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             TTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGG-G-GGGGGBCTTCEEEEE
T ss_pred             CCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCC-E-EhhheecCCCCCcEE
Confidence            77777777643 55444567777888888887765 554445677778888888776542 2 233456666666543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.46  E-value=4.3e-16  Score=147.96  Aligned_cols=150  Identities=24%  Similarity=0.309  Sum_probs=101.1

Q ss_pred             CCccEEEcccCcceecccc------ccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCc
Q 005711          420 DSLKILDISNNQISGEIPL------TLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQA  493 (681)
Q Consensus       420 ~~L~~L~Ls~n~l~~~~p~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~  493 (681)
                      ..++.++++.+.+.+.+|.      .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++
T Consensus        18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~   94 (198)
T 1ds9_A           18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT   94 (198)
T ss_dssp             TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred             ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence            3444444444444444443      66667777777777777765 45 6667777777777777776 56666666667


Q ss_pred             cceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCC--CcCCCCCCCEEECCCCcCccc
Q 005711          494 IQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVP--GLYRLRSLRALDLSHNSLTGQ  571 (681)
Q Consensus       494 L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip--~~~~l~~L~~L~Ls~N~l~~~  571 (681)
                      |+.|++++|+++                  .+| .+..+++|++|++++|++++..+  .+..+++|+.|++++|.+++.
T Consensus        95 L~~L~L~~N~l~------------------~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A           95 LEELWISYNQIA------------------SLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             CSEEEEEEEECC------------------CHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             CCEEECcCCcCC------------------cCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence            777766666554                  233 46678888888888888875433  377788888888888888877


Q ss_pred             CCcc----------ccCCCCCCeEecccCcce
Q 005711          572 IPGN----------ISSLQELTLLNLSYNSFS  593 (681)
Q Consensus       572 ~p~~----------l~~l~~L~~L~ls~N~l~  593 (681)
                      +|..          +..+++|+.||  +|+++
T Consensus       156 ~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          156 YKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             cccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            6653          67788888876  55553

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.45  E-value=3e-12  Score=134.75  Aligned_cols=245  Identities=11%  Similarity=0.077  Sum_probs=149.5

Q ss_pred             hhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhccc
Q 005711          243 CFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTE  322 (681)
Q Consensus       243 ~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~  322 (681)
                      .+|.++ +|+.+.+..+ ++.....+|.+ .+|+.+.+.. .++......|..+++|+.+++..|.++..-...|. .. 
T Consensus       130 ~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~-  203 (401)
T 4fdw_A          130 DAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YA-  203 (401)
T ss_dssp             TTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TC-
T ss_pred             hhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ec-
Confidence            344443 5666666554 44344445555 3577777664 44444455666777777777777766632222332 22 


Q ss_pred             CCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceee
Q 005711          323 KAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALI  402 (681)
Q Consensus       323 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~  402 (681)
                        +|+.+.+.++ ++..-...|..+++|+.+++.++ ++.....+|.+ .+|+.+++. +.++..-...|.+|.+|+.+.
T Consensus       204 --~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~  277 (401)
T 4fdw_A          204 --GIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVT  277 (401)
T ss_dssp             --CCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEE
T ss_pred             --ccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEE
Confidence              6777777644 55445566777777888887764 44444455655 677777774 445545566777777777777


Q ss_pred             ccccccc-----ccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccC
Q 005711          403 VNNNNLS-----GEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIAR  477 (681)
Q Consensus       403 l~~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  477 (681)
                      +.++.+.     ......|.++++|+.+++.+ .++......|.+|++|+.+++.++ ++..-..+|.++ +|+.+++.+
T Consensus       278 l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~  354 (401)
T 4fdw_A          278 TYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEG  354 (401)
T ss_dssp             EESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECC
T ss_pred             eCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcC
Confidence            7766554     23445677777788887774 465555667777788888877554 554455667777 788888877


Q ss_pred             CcCcccCCcccccC-CccceeecccC
Q 005711          478 NKLSGNLPNWLFSF-QAIQMMDFSTN  502 (681)
Q Consensus       478 n~l~~~~p~~~~~l-~~L~~L~ls~n  502 (681)
                      |......+..+..+ ..++.+.+..+
T Consensus       355 n~~~~l~~~~F~~~~~~l~~l~vp~~  380 (401)
T 4fdw_A          355 TTPPQVFEKVWYGFPDDITVIRVPAE  380 (401)
T ss_dssp             SSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred             CCCcccccccccCCCCCccEEEeCHH
Confidence            76654334444444 24555555443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.44  E-value=5.3e-12  Score=132.90  Aligned_cols=205  Identities=11%  Similarity=0.057  Sum_probs=104.5

Q ss_pred             cchhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhc
Q 005711          241 LPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQT  320 (681)
Q Consensus       241 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~  320 (681)
                      -+..|.++++|+.+++..|+++......|. ..+|+.+.+..+ ++......|..+++|+.+++..+ +           
T Consensus       172 ~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l-----------  237 (401)
T 4fdw_A          172 KEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-V-----------  237 (401)
T ss_dssp             CSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-C-----------
T ss_pred             hHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-c-----------
Confidence            334555556666666655555543333333 355555555532 33333444555555555555442 2           


Q ss_pred             ccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCc-----cccCcccccC
Q 005711          321 TEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLS-----GSIPLNIVGC  395 (681)
Q Consensus       321 ~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-----~~~p~~~~~~  395 (681)
                                      +..-..+|.. .+|+.+.+.+ .++......|.++++|+.+++.+|.+.     ...+..|.+|
T Consensus       238 ----------------~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c  299 (401)
T 4fdw_A          238 ----------------STIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGC  299 (401)
T ss_dssp             ----------------CEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTC
T ss_pred             ----------------cCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCC
Confidence                            2112222333 3444444422 233333344555555555555444432     2333455555


Q ss_pred             CCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCC-CCCEEE
Q 005711          396 FQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWT-NLKYFS  474 (681)
Q Consensus       396 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~  474 (681)
                      ++|+.+.+.+ .+...-..+|.++.+|+.+++..+ ++..-...|.++ +|+.+++.+|.+....+..|..++ +++.|.
T Consensus       300 ~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~  376 (401)
T 4fdw_A          300 PKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIR  376 (401)
T ss_dssp             TTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEE
T ss_pred             ccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEE
Confidence            5666665552 344444455666667777777543 444445666777 777777777766544445555553 566777


Q ss_pred             ccCCcC
Q 005711          475 IARNKL  480 (681)
Q Consensus       475 L~~n~l  480 (681)
                      +..+.+
T Consensus       377 vp~~~~  382 (401)
T 4fdw_A          377 VPAESV  382 (401)
T ss_dssp             ECGGGH
T ss_pred             eCHHHH
Confidence            666554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.43  E-value=2e-13  Score=126.70  Aligned_cols=132  Identities=15%  Similarity=0.138  Sum_probs=83.9

Q ss_pred             CCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccccCCCCCcccccCCcc
Q 005711          441 AGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNL  520 (681)
Q Consensus       441 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~  520 (681)
                      ..+++|++|++++|.++. ++......++|++|++++|.+++.  ..+..+++|+.|++++|+++               
T Consensus        16 ~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~---------------   77 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC---------------   77 (176)
T ss_dssp             ECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC---------------
T ss_pred             CCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc---------------
Confidence            445556666666666552 233222233666666666666543  34555555555555555443               


Q ss_pred             ccccCCcc-cccccccceeecCCCcCcccCC--CcCCCCCCCEEECCCCcCcccCCcc----ccCCCCCCeEecccCcce
Q 005711          521 LHGTIPKG-LFQLQGLEYLNLSFNFLDGQVP--GLYRLRSLRALDLSHNSLTGQIPGN----ISSLQELTLLNLSYNSFS  593 (681)
Q Consensus       521 l~g~ip~~-l~~l~~L~~L~Ls~N~l~~~ip--~~~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~L~ls~N~l~  593 (681)
                         .+|+. +..+++|++|++++|+++...+  .+..+++|+.|++++|.++ .+|..    +..+++|+.||+++|...
T Consensus        78 ---~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           78 ---RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             ---EECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             ---ccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence               23333 4677888888888888864333  3677888888888888887 45654    788889999999888765


Q ss_pred             e
Q 005711          594 G  594 (681)
Q Consensus       594 ~  594 (681)
                      .
T Consensus       154 ~  154 (176)
T 1a9n_A          154 E  154 (176)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.43  E-value=8.5e-12  Score=131.76  Aligned_cols=318  Identities=11%  Similarity=-0.009  Sum_probs=198.4

Q ss_pred             CCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCCcCccccC
Q 005711          118 FTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIP  197 (681)
Q Consensus       118 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p  197 (681)
                      ++.+-..+|.++++|+.+++..+ ++.+...+|.++++|+.+++..+ .                          +..-.
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l--------------------------~~I~~  110 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-V--------------------------KMIGR  110 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-C--------------------------CEECT
T ss_pred             EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-c--------------------------eEccc
Confidence            34344567888888888888743 66555667888888888877654 1                          11112


Q ss_pred             ccccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChhhcccCcccE
Q 005711          198 ESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTH  277 (681)
Q Consensus       198 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  277 (681)
                      .+|.++.+|+.+.+..+ +....                     ..+|..+..++.......  .......|.++++|+.
T Consensus       111 ~aF~~c~~L~~i~~p~~-l~~i~---------------------~~aF~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~  166 (394)
T 4fs7_A          111 CTFSGCYALKSILLPLM-LKSIG---------------------VEAFKGCDFKEITIPEGV--TVIGDEAFATCESLEY  166 (394)
T ss_dssp             TTTTTCTTCCCCCCCTT-CCEEC---------------------TTTTTTCCCSEEECCTTC--CEECTTTTTTCTTCCE
T ss_pred             hhhcccccchhhcccCc-eeeec---------------------ceeeecccccccccCccc--cccchhhhcccCCCcE
Confidence            33455555555444322 11111                     111222211111111111  1112234556666666


Q ss_pred             EecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccC
Q 005711          278 LNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSN  357 (681)
Q Consensus       278 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~  357 (681)
                      +.+.++. .......|..+.+|+.+++..+ ++......+....   .|+.+.+..+...  +........+|+.+.+.+
T Consensus       167 i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~---~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~  239 (394)
T 4fs7_A          167 VSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECI---LLENMEFPNSLYY--LGDFALSKTGVKNIIIPD  239 (394)
T ss_dssp             EECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCT---TCCBCCCCTTCCE--ECTTTTTTCCCCEEEECT
T ss_pred             EecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhcccc---ccceeecCCCceE--eehhhcccCCCceEEECC
Confidence            6665442 2233445666777777777655 2212222343333   6777777665443  223344567899998876


Q ss_pred             CccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceeccc
Q 005711          358 NLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIP  437 (681)
Q Consensus       358 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p  437 (681)
                      .. +......+.++..++.+.+..+... .....+..+..++.+....+.+.   ...|..+.+|+.+.+.++ +...-.
T Consensus       240 ~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~  313 (394)
T 4fs7_A          240 SF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGE  313 (394)
T ss_dssp             TC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECT
T ss_pred             Cc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccccc-cceech
Confidence            53 3344567888999999999877543 55667888889998887765432   345778999999999865 554556


Q ss_pred             cccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccC
Q 005711          438 LTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTN  502 (681)
Q Consensus       438 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n  502 (681)
                      ..|.+|.+|+.+++.++ ++..-..+|.++++|+.+++..+ ++..-...+.++.+|+.+++..+
T Consensus       314 ~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          314 EAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             TTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             hhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            78999999999999755 66555678999999999999876 55444567889999999998765

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.41  E-value=5.1e-13  Score=124.02  Aligned_cols=58  Identities=17%  Similarity=0.197  Sum_probs=25.6

Q ss_pred             CccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcC
Q 005711          421 SLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKL  480 (681)
Q Consensus       421 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  480 (681)
                      +|+.|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus        43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i  100 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL  100 (176)
T ss_dssp             CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCC
T ss_pred             CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcC
Confidence            444444444444432  3344444444444444444433223334444444444444444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.41  E-value=7.4e-13  Score=121.98  Aligned_cols=84  Identities=27%  Similarity=0.288  Sum_probs=70.7

Q ss_pred             cccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccCcc
Q 005711          514 MDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSF  592 (681)
Q Consensus       514 L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l  592 (681)
                      |+|++|++++..|..+..+++|++|+|++|++++..+. +..+++|+.|+|++|++++..+..|..+++|++|++++|++
T Consensus        35 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             EEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence            33444444445577788899999999999999977776 78899999999999999988777899999999999999999


Q ss_pred             eeeCC
Q 005711          593 SGFVP  597 (681)
Q Consensus       593 ~~~~p  597 (681)
                      .|.++
T Consensus       115 ~c~c~  119 (170)
T 3g39_A          115 DCACS  119 (170)
T ss_dssp             CTTBG
T ss_pred             CCCch
Confidence            98876

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.40  E-value=3.4e-15  Score=141.71  Aligned_cols=128  Identities=25%  Similarity=0.326  Sum_probs=64.8

Q ss_pred             CccEEEccCCCCcCCCcc------cccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCc
Q 005711          325 GLVLLDLSHNRFSGEIPL------KITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQL  398 (681)
Q Consensus       325 ~L~~L~Ls~n~l~~~~p~------~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L  398 (681)
                      .++.++++.+.++|.+|.      .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|
T Consensus        19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L   95 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL   95 (198)
T ss_dssp             CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred             cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence            566666666666665554      55566666666666666654 44 5555666666666666655 344444444444


Q ss_pred             ceeecccccccccCccccCCCCCccEEEcccCcceeccc-cccCCCCCCcEEECCCCcCC
Q 005711          399 LALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIP-LTLAGLKSLEIVDFSSNNLS  457 (681)
Q Consensus       399 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~  457 (681)
                      +.|++++|.+++ +| .+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus        96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~  153 (198)
T 1ds9_A           96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred             CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence            444444444443 12 23344444444444444442211 23344444444444444443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.37  E-value=1.9e-12  Score=119.70  Aligned_cols=107  Identities=22%  Similarity=0.243  Sum_probs=80.0

Q ss_pred             CEEEccCCcCcccCCcccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCC
Q 005711          471 KYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVP  550 (681)
Q Consensus       471 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip  550 (681)
                      +.+++++|.+. .+|..+.  ++|+.|++++|                 ++++..|..+.++++|++|+|++|++++..+
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N-----------------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~   74 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNN-----------------QITKLEPGVFDHLVNLQQLYFNSNKLTAIPT   74 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSS-----------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCC-----------------CccccCHHHhcCCcCCCEEECCCCCCCccCh
Confidence            45566666554 4444332  44444444444                 4444556778889999999999999997666


Q ss_pred             C-cCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccCcceeeCC
Q 005711          551 G-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVP  597 (681)
Q Consensus       551 ~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p  597 (681)
                      . +..+++|+.|+|++|++++..+..|..+++|++|++++|++.+.++
T Consensus        75 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           75 GVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             hHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            6 6789999999999999997777679999999999999999988765

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.33  E-value=8.6e-12  Score=114.80  Aligned_cols=104  Identities=26%  Similarity=0.275  Sum_probs=62.9

Q ss_pred             EEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCC
Q 005711           86 SINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNP  165 (681)
Q Consensus        86 ~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~  165 (681)
                      .++++++.+.. +|..+.  ++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|++++| 
T Consensus        13 ~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-   88 (170)
T 3g39_A           13 TVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN-   88 (170)
T ss_dssp             EEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred             EEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-
Confidence            35555666553 444442  66777777777777666667777777777777777777555555566665555555555 


Q ss_pred             CCCccCCchhccccCCccEEEccCCcCccccCccccCCCCCCEEEccCccCcc
Q 005711          166 ELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTG  218 (681)
Q Consensus       166 ~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  218 (681)
                                               .+++..+..|.++++|++|++++|.++.
T Consensus        89 -------------------------~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           89 -------------------------QLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             -------------------------CCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             -------------------------ccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence                                     4443333445555666666666655543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.29  E-value=1.7e-11  Score=113.15  Aligned_cols=77  Identities=25%  Similarity=0.263  Sum_probs=51.3

Q ss_pred             EEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCC
Q 005711           85 VSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN  164 (681)
Q Consensus        85 ~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n  164 (681)
                      +.++++++.+. .+|..+.  ++|++|+|++|.+++..|..|+++++|++|+|++|++++..+..|.++++|++|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            35677777763 4555554  67777777777777776777777777777777777777554445566666666666555

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.26  E-value=1.2e-09  Score=115.11  Aligned_cols=108  Identities=16%  Similarity=0.161  Sum_probs=64.5

Q ss_pred             cccCCC-CCCEEECCCCcCCccccccccCCCCCCEEEccCCC---CCCcCCccccCCCCCCEeeCCCCCCCCccCCchhc
Q 005711          101 RLCKLS-FLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNK---FVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVG  176 (681)
Q Consensus       101 ~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~  176 (681)
                      +|.++. .|+.+.+.. .++.+-..+|.+|++|+.+.++.|.   ++.+...+|.++.+|+.+.+..+ . ...-...+.
T Consensus        58 aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~-~~I~~~aF~  134 (394)
T 4gt6_A           58 VFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-V-TEIDSEAFH  134 (394)
T ss_dssp             TTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-C-SEECTTTTT
T ss_pred             hccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-c-ceehhhhhh
Confidence            455663 588888875 3665667788888888888887653   55455567888888887776554 1 111122233


Q ss_pred             cccCCccEEEccCCcCccccCccccCCCCCCEEEccC
Q 005711          177 NFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEK  213 (681)
Q Consensus       177 ~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  213 (681)
                      .. .+|+.+.+..+ +...-...|.++.+|+.+.+..
T Consensus       135 ~c-~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~  169 (394)
T 4gt6_A          135 HC-EELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPD  169 (394)
T ss_dssp             TC-TTCCEEECCTT-CCEECTTTTTTCTTCCEEECCT
T ss_pred             hh-cccccccccce-eeeecccceecccccccccccc
Confidence            33 56666666433 2223334455566666665543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.24  E-value=4.9e-13  Score=139.37  Aligned_cols=38  Identities=24%  Similarity=0.198  Sum_probs=17.6

Q ss_pred             CCCCEEECCCCcCCcccccccc-----CCCCCCEEEccCCCCC
Q 005711          106 SFLEFLVLSSNAFTGRISTCFG-----GLSGLKTLDLSYNKFV  143 (681)
Q Consensus       106 ~~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~l~  143 (681)
                      ++|++|+|++|.++......+.     ..++|++|+|++|.++
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~  114 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD  114 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCC
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCC
Confidence            3455566665555543222221     1245555555555544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.19  E-value=2.2e-09  Score=113.12  Aligned_cols=332  Identities=12%  Similarity=0.104  Sum_probs=155.4

Q ss_pred             cccccccCCC-CCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCC--CCCccCCchhccccCCccEEEccCCcCccccC
Q 005711          121 RISTCFGGLS-GLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNP--ELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIP  197 (681)
Q Consensus       121 ~~~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~--~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p  197 (681)
                      +-..+|.+++ .|+.+.+..+ ++.+...+|.++++|+.+.+..|.  .+...-...+..+ .+|+.+.+..+ ++..-.
T Consensus        54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c-~~L~~i~~~~~-~~~I~~  130 (394)
T 4gt6_A           54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFC-SELTDIPILDS-VTEIDS  130 (394)
T ss_dssp             ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTC-TTCCBCGGGTT-CSEECT
T ss_pred             cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhc-ccceeeccCCc-cceehh
Confidence            3456788885 5999999764 666677889999999999887661  0111111223333 44554444332 222223


Q ss_pred             ccccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChhhcccCcccE
Q 005711          198 ESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTH  277 (681)
Q Consensus       198 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  277 (681)
                      .+|.++.+|+.+.+..+.                      .......+..+..|+.+.+..+ ++..-...|.. .+|+.
T Consensus       131 ~aF~~c~~L~~i~lp~~~----------------------~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~  186 (394)
T 4gt6_A          131 EAFHHCEELDTVTIPEGV----------------------TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQ  186 (394)
T ss_dssp             TTTTTCTTCCEEECCTTC----------------------CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSE
T ss_pred             hhhhhhccccccccccee----------------------eeecccceecccccccccccce-eeEeccccccc-cceeE
Confidence            345555666665554321                      1122334455555555555443 22122222322 34555


Q ss_pred             EecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccC
Q 005711          278 LNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSN  357 (681)
Q Consensus       278 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~  357 (681)
                      +.+..+-. ......+..+..+.......+.... +...+....             .........+.....+..+.+.+
T Consensus       187 i~ip~~~~-~i~~~af~~c~~l~~~~~~~~~~~~-~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~ip~  251 (394)
T 4gt6_A          187 IHIPAKVT-RIGTNAFSECFALSTITSDSESYPA-IDNVLYEKS-------------ANGDYALIRYPSQREDPAFKIPN  251 (394)
T ss_dssp             EEECTTCC-EECTTTTTTCTTCCEEEECCSSSCB-SSSCEEEEC-------------TTSCEEEEECCTTCCCSEEECCT
T ss_pred             EEECCccc-ccccchhhhccccceeccccccccc-ccceeeccc-------------ccccccccccccccccceEEcCC
Confidence            55543321 1223334445555554444332221 000000000             00000000011122233333322


Q ss_pred             CccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceeccc
Q 005711          358 NLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIP  437 (681)
Q Consensus       358 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p  437 (681)
                      . ++.....+|.+++.|+.+.+.++... .....|.++..|+.+.+. +.+.......|.++.+|+.+++..+ ++..-.
T Consensus       252 ~-v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~  327 (394)
T 4gt6_A          252 G-VARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILD  327 (394)
T ss_dssp             T-EEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECT
T ss_pred             c-ceEcccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehH
Confidence            1 22223344555556666655543322 333445555566666554 2333333445666677777777653 443445


Q ss_pred             cccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccC
Q 005711          438 LTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTN  502 (681)
Q Consensus       438 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n  502 (681)
                      ..|.+|.+|+.+.+..+ ++..-..+|.+|++|+.+++.++....   ..+..+.+|+.+.+..+
T Consensus       328 ~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          328 DAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             TTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC--------
T ss_pred             hHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCC
Confidence            66777777777777544 443445667777777777777665331   23445566666655444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.19  E-value=8e-11  Score=122.05  Aligned_cols=109  Identities=24%  Similarity=0.255  Sum_probs=83.4

Q ss_pred             CC--CCCCceeecCCCCcEEEEEcCCC-CCcccccccccCCCCCCEEECCC-CcCCccccccccCCCCCCEEEccCCCCC
Q 005711           68 NC--TNWTGVACNFQTGHVVSINLTDT-SLSGQVHPRLCKLSFLEFLVLSS-NAFTGRISTCFGGLSGLKTLDLSYNKFV  143 (681)
Q Consensus        68 ~c--c~w~gv~c~~~~~~v~~L~L~~~-~l~g~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  143 (681)
                      .|  |.|..|.|+            ++ ++.+ +|. +..+++|++|+|++ |.+++..+..|+++++|++|+|++|+|+
T Consensus         4 ~c~~C~~~~v~~~------------~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~   69 (347)
T 2ifg_A            4 ACCPHGSSGLRCT------------RDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR   69 (347)
T ss_dssp             SSCCSSSSCEECC------------SSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC
T ss_pred             cCccccCCEEEcC------------CCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccc
Confidence            46  778777775            23 4543 677 99999999999996 9999888889999999999999999999


Q ss_pred             CcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCCcCc
Q 005711          144 GVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFC  193 (681)
Q Consensus       144 ~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~  193 (681)
                      +..|..|.++++|++|+|++|+ +.+..+..+..+  .|++|++++|.+.
T Consensus        70 ~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~--~L~~l~l~~N~~~  116 (347)
T 2ifg_A           70 FVAPDAFHFTPRLSRLNLSFNA-LESLSWKTVQGL--SLQELVLSGNPLH  116 (347)
T ss_dssp             EECTTGGGSCSCCCEEECCSSC-CSCCCSTTTCSC--CCCEEECCSSCCC
T ss_pred             eeCHHHhcCCcCCCEEeCCCCc-cceeCHHHcccC--CceEEEeeCCCcc
Confidence            9888899999999999998884 333333333333  3666666666665

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.16  E-value=1.4e-12  Score=135.93  Aligned_cols=170  Identities=16%  Similarity=0.134  Sum_probs=90.0

Q ss_pred             CCCCcEEeccCCCccCCCChhhhhc-c-cCCCccEEEccCCCCcCCCcccc-cCCCCCCEEeccCCcccccccccc----
Q 005711          296 FEKLLLLDLSFNDLSGPLPSKIAQT-T-EKAGLVLLDLSHNRFSGEIPLKI-TELKSLQALFLSNNLLIGEIPARI----  368 (681)
Q Consensus       296 l~~L~~L~L~~n~l~~~~p~~~~~~-~-~~~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~~~~l----  368 (681)
                      .+.|+.|++++|.++......+... . ..++|+.|++++|.+++.....+ ..+++|++|+|++|.++......+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            3567777777777654333333322 1 11366677777776653322222 223456666666666654332222    


Q ss_pred             -CCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceec----cccccCCC
Q 005711          369 -GNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGE----IPLTLAGL  443 (681)
Q Consensus       369 -~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l  443 (681)
                       ...++|++|++++|.++.....                    .++..+..+++|++|+|++|.+.+.    ++..+..+
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~--------------------~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~  210 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVA--------------------VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRN  210 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHH--------------------HHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGC
T ss_pred             HhcCCccceeeCCCCCCChHHHH--------------------HHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcC
Confidence             2345566666666655431111                    1122234455666666666666543    23445556


Q ss_pred             CCCcEEECCCCcCCCc----chhhhhcCCCCCEEEccCCcCcccCC
Q 005711          444 KSLEIVDFSSNNLSGS----LNDAITKWTNLKYFSIARNKLSGNLP  485 (681)
Q Consensus       444 ~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~p  485 (681)
                      ++|++|+|++|.++..    +...+...++|++|+|++|.+++...
T Consensus       211 ~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~  256 (372)
T 3un9_A          211 RQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGR  256 (372)
T ss_dssp             SCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHH
T ss_pred             CCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHH
Confidence            6777777777777642    33344456677777777777664433

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.13  E-value=9.8e-11  Score=121.39  Aligned_cols=69  Identities=26%  Similarity=0.173  Sum_probs=34.2

Q ss_pred             cccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccCcceeeC
Q 005711          527 KGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFV  596 (681)
Q Consensus       527 ~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~  596 (681)
                      ..|.++++|+.|+|++|+|++.+|. |.++++|+.|||++|+|++..|..+..++ |+.|++++|++.|.+
T Consensus        50 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c  119 (347)
T 2ifg_A           50 RDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCSC  119 (347)
T ss_dssp             GGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCCG
T ss_pred             hHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCCC
Confidence            3344455555555555555544444 44555555555555555544444444333 555555555555443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.82  E-value=5.7e-07  Score=94.07  Aligned_cols=108  Identities=15%  Similarity=0.112  Sum_probs=53.9

Q ss_pred             ccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCC
Q 005711          367 RIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSL  446 (681)
Q Consensus       367 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  446 (681)
                      .+.++..|+.+.+..+ ++..-...+.++.+|+.+.+..+ +.......|.++.+|+.+.+.++.++..-...|.+|.+|
T Consensus       235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L  312 (379)
T 4h09_A          235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL  312 (379)
T ss_dssp             TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred             cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence            3444445555554433 22223334444455555544322 222223345556666666666555554445556666666


Q ss_pred             cEEECCCCcCCCcchhhhhcCCCCCEEEccC
Q 005711          447 EIVDFSSNNLSGSLNDAITKWTNLKYFSIAR  477 (681)
Q Consensus       447 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  477 (681)
                      +.+++.++ ++..-..+|.+|++|+.+.+..
T Consensus       313 ~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          313 SSVTLPTA-LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             CEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             CEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence            66666543 3333345566666666665543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.79  E-value=2.8e-09  Score=109.96  Aligned_cols=63  Identities=17%  Similarity=0.202  Sum_probs=34.0

Q ss_pred             CCCCCEEEccCCccccCCChhhc---ccCcccEEecCCCccccc----cCccccCCCCCcEEeccCCCcc
Q 005711          248 AMSLTVLKLDNNSVVGGIPTCIA---SLQALTHLNLSHNHLNYE----ISPRLVFFEKLLLLDLSFNDLS  310 (681)
Q Consensus       248 ~~~L~~L~L~~n~l~~~~p~~l~---~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~  310 (681)
                      +++|++|++.+|.+....+..+.   .+++|++|+|+.|.+++.    ++..+..+++|+.|+++.|.++
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            45566666655555432222222   355666666666666543    2223344566777777776655

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.74  E-value=1.8e-06  Score=90.16  Aligned_cols=39  Identities=3%  Similarity=0.098  Sum_probs=28.1

Q ss_pred             cccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCC
Q 005711          125 CFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN  164 (681)
Q Consensus       125 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n  164 (681)
                      .+....+|+.+.+.. .++.+...+|.++.+|+.+++..+
T Consensus        41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~   79 (379)
T 4h09_A           41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST   79 (379)
T ss_dssp             TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT
T ss_pred             ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc
Confidence            355667888888865 466555677888888888888654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.70  E-value=1.9e-08  Score=103.72  Aligned_cols=138  Identities=21%  Similarity=0.261  Sum_probs=75.2

Q ss_pred             cccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccc--cCCCcceeeccc--cccccc-----Cc
Q 005711          343 KITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIV--GCFQLLALIVNN--NNLSGE-----IQ  413 (681)
Q Consensus       343 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~--~~~~L~~L~l~~--n~l~~~-----~~  413 (681)
                      .+..+|+|+.|.+++|.-. .++. +. +++|++|++..+.+.......+.  .+++|+.|+++.  +...+.     +.
T Consensus       167 ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~  243 (362)
T 2ra8_A          167 VLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR  243 (362)
T ss_dssp             HHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred             HHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence            3444555666666554211 1222 22 45566666655554433222222  455566655532  111111     01


Q ss_pred             ccc--CCCCCccEEEcccCcceecccccc---CCCCCCcEEECCCCcCCCc----chhhhhcCCCCCEEEccCCcCccc
Q 005711          414 PEL--DALDSLKILDISNNQISGEIPLTL---AGLKSLEIVDFSSNNLSGS----LNDAITKWTNLKYFSIARNKLSGN  483 (681)
Q Consensus       414 ~~~--~~l~~L~~L~Ls~n~l~~~~p~~~---~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~  483 (681)
                      ..+  ..+++|+.|++.+|.+.+..+..+   ..+++|++|+|+.|.+.+.    ++..+.++++|+.|++++|.++..
T Consensus       244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~  322 (362)
T 2ra8_A          244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE  322 (362)
T ss_dssp             GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred             HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence            112  246788888888888765433322   2467888888888888754    333345678888888888877643

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.62  E-value=1.7e-09  Score=105.71  Aligned_cols=80  Identities=26%  Similarity=0.300  Sum_probs=50.6

Q ss_pred             cCCCCCCEEEccCCCCCC--cCCccccCCCCCCEeeCCCCCCCCccCCchhccccC--CccEEEccCCcCccccCc----
Q 005711          127 GGLSGLKTLDLSYNKFVG--VVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSM--NLEKLDFSFNSFCGEIPE----  198 (681)
Q Consensus       127 ~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~--~L~~L~L~~n~l~~~~p~----  198 (681)
                      .++++|++|+|++|++++  .+|..+..+++|++|+|++|.+ .+.  ..+..+ .  +|++|+|++|.+++.+|.    
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i-~~~--~~l~~l-~~l~L~~L~L~~Npl~~~~~~~~~y  242 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL-KSE--RELDKI-KGLKLEELWLDGNSLCDTFRDQSTY  242 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCC-CSG--GGGGGG-TTSCCSEEECTTSTTGGGCSSHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCcc-CCc--hhhhhc-ccCCcceEEccCCcCccccCcchhH
Confidence            457778888888888776  4456666777777777777743 222  223333 3  677777777777665542    


Q ss_pred             ---cccCCCCCCEEE
Q 005711          199 ---SLYYLKSLKHLD  210 (681)
Q Consensus       199 ---~l~~l~~L~~L~  210 (681)
                         .+..+++|+.||
T Consensus       243 ~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          243 ISAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHHCTTCCEES
T ss_pred             HHHHHHHCcccCeEC
Confidence               245566666664

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.43  E-value=3.7e-08  Score=91.59  Aligned_cols=118  Identities=11%  Similarity=0.024  Sum_probs=68.1

Q ss_pred             ccccccCCCCCCEEECCCC-cCCcc----ccccccCCCCCCEEEccCCCCCCc----CCccccCCCCCCEeeCCCCCCCC
Q 005711           98 VHPRLCKLSFLEFLVLSSN-AFTGR----ISTCFGGLSGLKTLDLSYNKFVGV----VPDAIMKLRNLRELILKGNPELG  168 (681)
Q Consensus        98 ~~~~l~~l~~L~~L~Ls~n-~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~~~~  168 (681)
                      +...+...+.|++|+|++| .+...    +...+...+.|++|+|++|.+...    +...+...++|++|+|++|.+ +
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i-~  106 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI-S  106 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC-C
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC-C
Confidence            3345566778888888887 77643    445566677888888888877643    223344556677777776632 2


Q ss_pred             cc----CCchhccccCCccEEEc--cCCcCccc----cCccccCCCCCCEEEccCccCc
Q 005711          169 GV----FPGWVGNFSMNLEKLDF--SFNSFCGE----IPESLYYLKSLKHLDLEKNNLT  217 (681)
Q Consensus       169 ~~----~p~~l~~l~~~L~~L~L--~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~  217 (681)
                      ..    +...+... ++|++|++  ++|.+...    +.+.+...++|++|++++|.+.
T Consensus       107 ~~g~~~l~~~L~~n-~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          107 GSGILALVEALQSN-TSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHHHGGGGC-SSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHHHHhC-CCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            11    22233333 45666666  55665532    2233444556666666665553

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.22  E-value=3.5e-07  Score=84.90  Aligned_cols=120  Identities=18%  Similarity=0.193  Sum_probs=64.9

Q ss_pred             ccccCCCCCCEEeccCC-ccccc----cccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCcccc
Q 005711          342 LKITELKSLQALFLSNN-LLIGE----IPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPEL  416 (681)
Q Consensus       342 ~~l~~l~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~  416 (681)
                      ..+...+.|++|+|++| .+...    +...+...++|++|+|++|.+.......+                    ...+
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l--------------------~~~L   89 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFAL--------------------AEML   89 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHH--------------------HHHH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHH--------------------HHHH
Confidence            34455666777777766 55432    23334455666666666666543221111                    1122


Q ss_pred             CCCCCccEEEcccCcceec----cccccCCCCCCcEEEC--CCCcCCCc----chhhhhcCCCCCEEEccCCcCc
Q 005711          417 DALDSLKILDISNNQISGE----IPLTLAGLKSLEIVDF--SSNNLSGS----LNDAITKWTNLKYFSIARNKLS  481 (681)
Q Consensus       417 ~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L--~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~  481 (681)
                      ...++|+.|+|++|.+.+.    +...+...++|++|+|  ++|.+...    +...+...++|++|++++|.+.
T Consensus        90 ~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           90 KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            3345566666666666543    2344555666777777  66666533    2334445566777777766654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.14  E-value=6.4e-07  Score=87.51  Aligned_cols=66  Identities=27%  Similarity=0.292  Sum_probs=49.4

Q ss_pred             ccccccceeecCCCcCcc--cCCC-cCCCCCCCEEECCCCcCcccCCccccCCC--CCCeEecccCcceeeCC
Q 005711          530 FQLQGLEYLNLSFNFLDG--QVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQ--ELTLLNLSYNSFSGFVP  597 (681)
Q Consensus       530 ~~l~~L~~L~Ls~N~l~~--~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~ls~N~l~~~~p  597 (681)
                      .++++|+.|+|++|++++  .+|. +..+++|+.|+|++|++++.  ..+..+.  .|++|++++|++++.+|
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            457788888888888886  3455 56788888888888888865  3344444  88888888888887665

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.88  E-value=4.2e-06  Score=75.68  Aligned_cols=35  Identities=14%  Similarity=0.053  Sum_probs=20.5

Q ss_pred             CccEEEccCCc-CccccCccccCCCCCCEEEccCcc
Q 005711          181 NLEKLDFSFNS-FCGEIPESLYYLKSLKHLDLEKNN  215 (681)
Q Consensus       181 ~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~  215 (681)
                      +|++|++++|. ++..--..+..+++|++|+++++.
T Consensus       115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred             CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence            46666666654 543333345666777777777654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.68  E-value=2.1e-05  Score=71.12  Aligned_cols=34  Identities=21%  Similarity=0.235  Sum_probs=13.6

Q ss_pred             CCcEEECCCCc-CCCcchhhhhcCCCCCEEEccCC
Q 005711          445 SLEIVDFSSNN-LSGSLNDAITKWTNLKYFSIARN  478 (681)
Q Consensus       445 ~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n  478 (681)
                      +|++|++++|. ++...-..+..+++|++|+++++
T Consensus       115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c  149 (176)
T 3e4g_A          115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL  149 (176)
T ss_dssp             HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred             CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence            34444444442 33222223334444444444443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.04  E-value=0.001  Score=57.10  Aligned_cols=60  Identities=22%  Similarity=0.232  Sum_probs=47.8

Q ss_pred             ceeecCCCcCc-ccCCC-cCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccCcceeeCC
Q 005711          536 EYLNLSFNFLD-GQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVP  597 (681)
Q Consensus       536 ~~L~Ls~N~l~-~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p  597 (681)
                      ..++-+++.++ ..+|. +  .++|+.|+|++|+|+...+..|..+++|+.|+|++|++.|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~   72 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR   72 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred             CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence            36777888776 34554 3  2578999999999997777788999999999999999988764

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.59  E-value=0.0012  Score=60.73  Aligned_cols=39  Identities=10%  Similarity=0.232  Sum_probs=19.5

Q ss_pred             CCccEEEccCC-cCcc----ccCccccCCCCCCEEEccCccCcc
Q 005711          180 MNLEKLDFSFN-SFCG----EIPESLYYLKSLKHLDLEKNNLTG  218 (681)
Q Consensus       180 ~~L~~L~L~~n-~l~~----~~p~~l~~l~~L~~L~L~~n~l~~  218 (681)
                      +.|++|+|++| .+..    .+.+.+...+.|+.|+|++|.+.+
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd   84 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISD   84 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBH
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCCh
Confidence            34555555543 3331    233344555566666666666553

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.57  E-value=0.0016  Score=59.83  Aligned_cols=116  Identities=16%  Similarity=0.161  Sum_probs=62.7

Q ss_pred             cCCCCCCEEeccCC-ccccc----cccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCC
Q 005711          345 TELKSLQALFLSNN-LLIGE----IPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDAL  419 (681)
Q Consensus       345 ~~l~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l  419 (681)
                      .+-+.|++|+|++| .+...    +.+.+..-+.|+.|+|++|.+.......+                    ...+..-
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~al--------------------A~aL~~N   97 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGL--------------------IELIETS   97 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTH--------------------HHHHHHC
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHH--------------------HHHHhcC
Confidence            44566777777764 55322    23445555667777777776654322222                    1223334


Q ss_pred             CCccEEEcccCcceec----cccccCCCCCCcEEECCCC---cCCC----cchhhhhcCCCCCEEEccCCcC
Q 005711          420 DSLKILDISNNQISGE----IPLTLAGLKSLEIVDFSSN---NLSG----SLNDAITKWTNLKYFSIARNKL  480 (681)
Q Consensus       420 ~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n---~l~~----~~~~~~~~l~~L~~L~L~~n~l  480 (681)
                      +.|+.|+|+.|.+.+.    +-..+..-+.|++|+|++|   .+..    .+...+..-+.|+.|+++.|..
T Consensus        98 ~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A           98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            5666667776666543    2234455566777777654   2232    1334455556677777766554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.33  E-value=0.032  Score=47.64  Aligned_cols=54  Identities=20%  Similarity=0.222  Sum_probs=27.4

Q ss_pred             EEEccCccCc-ccccC-cCCcccEEECCCCCCccccchhhccCCCCCEEEccCCcc
Q 005711          208 HLDLEKNNLT-GNVHD-FYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSV  261 (681)
Q Consensus       208 ~L~L~~n~l~-~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l  261 (681)
                      .++.+++.++ ..+|. ...++++|+|++|+++..-+..|..+++|++|+|++|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            4555555554 12222 223355555555555544444555556666666666654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	681
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-21
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-19
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-16
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-15
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	0.001
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-19
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-10
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.002
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-09
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.004
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.004
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.004
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	2e-06
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	6e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.004
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	6e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.002
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.002
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.003

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 94.4 bits (233), Expect = 1e-21
 Identities = 82/359 (22%), Positives = 125/359 (34%), Gaps = 61/359 (16%)

Query: 40  NLEDKASLLLFKSLVQDPTQKLSSWV-GSNCTN--WTGVACN--FQTGHVVSINLTDTSL 94
           N +DK +LL  K  + +PT  LSSW+  ++C N  W GV C+   QT  V +++L+  +L
Sbjct: 4   NPQDKQALLQIKKDLGNPTT-LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL 62

Query: 95  SG--QVHPRLCKLSFLEFLVLSSNA-FTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIM 151
                +   L  L +L FL +       G I      L+ L  L +++            
Sbjct: 63  PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS-------- 114

Query: 152 KLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDL 211
                                    +    L  LDFS+N+  G +P S+  L +L  +  
Sbjct: 115 ------------------GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156

Query: 212 EKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIAS 271
           + N ++G + D Y S   L          L        +   L   + S           
Sbjct: 157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVL 216

Query: 272 LQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDL 331
             +  +    H   N              L                           LDL
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLN-------------------------GLDL 251

Query: 332 SHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPL 390
            +NR  G +P  +T+LK L +L +S N L GEIP   GNL    V   ++N      PL
Sbjct: 252 RNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPL 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 85.2 bits (209), Expect = 1e-18
 Identities = 70/257 (27%), Positives = 110/257 (42%), Gaps = 9/257 (3%)

Query: 326 LVLLDLSHNRFSG--EIPLKITELKSLQALFLSNNL-LIGEIPARIGNLTYLQVIDLSHN 382
           +  LDLS         IP  +  L  L  L++     L+G IP  I  LT L  + ++H 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 383 MLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAG 442
            +SG+IP  +     L+ L  + N LSG + P + +L +L  +    N+ISG IP +   
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 443 LKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLF------SFQAIQM 496
              L      S N             NL +  ++RN L G+                 + 
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 497 MDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLR 556
                   +G   +  G+DL +N ++GT+P+GL QL+ L  LN+SFN L G++P    L+
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ 291

Query: 557 SLRALDLSHNSLTGQIP 573
                  ++N      P
Sbjct: 292 RFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 78.3 bits (191), Expect = 2e-16
 Identities = 70/276 (25%), Positives = 112/276 (40%), Gaps = 21/276 (7%)

Query: 345 TELKSLQALFLSNNLLIG--EIPARIGNLTYLQVIDLSHNM-LSGSIPLNIVGCFQLLAL 401
           T+   +  L LS   L     IP+ + NL YL  + +     L G IP  I    QL  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 402 IVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLN 461
            + + N+SG I   L  + +L  LD S N +SG +P +++ L +L  + F  N +SG++ 
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 462 DAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLL 521
           D+   ++ L                  F+   +  +D S N   G      G D +   +
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 522 HGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQE 581
           H       F L  +                          DL +N + G +P  ++ L+ 
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGL-----------------DLRNNRIYGTLPQGLTQLKF 269

Query: 582 LTLLNLSYNSFSGFVPWKQGYQKFPG-AFAGNPNLC 616
           L  LN+S+N+  G +P     Q+F   A+A N  LC
Sbjct: 270 LHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 63.6 bits (153), Expect = 2e-11
 Identities = 56/269 (20%), Positives = 89/269 (33%), Gaps = 11/269 (4%)

Query: 176 GNFSMNLEKLDFSFNSFCG--EIPESLYYLKSLKHLDLEKN-NLTGNVHDFYQS---LLV 229
              +  +  LD S  +      IP SL  L  L  L +    NL G +         L  
Sbjct: 46  DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105

Query: 230 LNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEI 289
           L +     SG +P F +   +L  L    N++ G +P  I+SL  L  +    N ++  I
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165

Query: 290 SPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKS 349
                 F KL        +               A                   +     
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAF----VDLSRNMLEGDASVLFGSDK 221

Query: 350 LQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLS 409
                      +     ++G    L  +DL +N + G++P  +     L +L V+ NNL 
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

Query: 410 GEIQPELDALDSLKILDISNNQISGEIPL 438
           GEI P+   L    +   +NN+     PL
Sbjct: 282 GEI-PQGGNLQRFDVSAYANNKCLCGSPL 309

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.8 bits (213), Expect = 2e-19
 Identities = 52/278 (18%), Positives = 90/278 (32%), Gaps = 14/278 (5%)

Query: 325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNML 384
             V            +P+ I    + Q +FL  N +     A       L ++ L  N+L
Sbjct: 12  PKVTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL 68

Query: 385 SGSIPLNIVGCFQLLALIVNNNNLSGEIQP-ELDALDSLKILDISNNQISGEIPLTLAGL 443
           +        G   L  L +++N     + P     L  L  L +    +    P    GL
Sbjct: 69  ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL 128

Query: 444 KSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNK 503
            +L+ +    N L    +D      NL +  +  N++S           ++  +    N+
Sbjct: 129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188

Query: 504 FMGFIPDA-------VGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLR 556
                P A       + + L  N L     + L  L+ L+YL L+ N             
Sbjct: 189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWA 248

Query: 557 SLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSG 594
            L+    S + +   +P     L    L  L+ N   G
Sbjct: 249 WLQKFRGSSSEVPCSLP---QRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.4 bits (186), Expect = 6e-16
 Identities = 53/282 (18%), Positives = 80/282 (28%), Gaps = 27/282 (9%)

Query: 177 NFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNR 236
                 +++    N        S    ++L  L L  N L       +  L +L      
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 237 FSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFF 296
            +  L                        P     L  L  L+L    L           
Sbjct: 89  DNAQLRSV--------------------DPATFHGLGRLHTLHLDRCGLQELGPGLFRGL 128

Query: 297 EKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLS 356
             L  L L  N L                L  L L  NR S         L SL  L L 
Sbjct: 129 AALQYLYLQDNALQALPDDTFRDLGN---LTHLFLHGNRISSVPERAFRGLHSLDRLLLH 185

Query: 357 NNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPEL 416
            N +    P    +L  L  + L  N LS      +     L  L +N+N    + +   
Sbjct: 186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-R 244

Query: 417 DALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSG 458
                L+    S++++   +P  LAG     +   ++N+L G
Sbjct: 245 PLWAWLQKFRGSSSEVPCSLPQRLAGRD---LKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.8 bits (182), Expect = 3e-15
 Identities = 48/260 (18%), Positives = 79/260 (30%), Gaps = 11/260 (4%)

Query: 130 SGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSF 189
           +  + + L  N+   V   +    RNL  L L  N         + G   +    L  + 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 190 NSFCGEIPESLYYLKSLKHLDLE---KNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAA 246
                  P + + L  L  L L+      L   +     +L  L L  N           
Sbjct: 92  QLRS-VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 247 SAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSF 306
              +LT L L  N +          L +L  L L  N + +          +L+ L L  
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 307 NDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPA 366
           N+                 L  L L+ N +  +          LQ    S++ +   +P 
Sbjct: 211 NN---LSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQ 266

Query: 367 RIGNLTYLQVIDLSHNMLSG 386
           R+       +  L+ N L G
Sbjct: 267 RLAG---RDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (146), Expect = 9e-11
 Identities = 55/264 (20%), Positives = 90/264 (34%), Gaps = 11/264 (4%)

Query: 265 IPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKA 324
           +P  I +      + L  N +++  +     F     L + +   +       A  T  A
Sbjct: 26  VPVGIPAA--SQRIFLHGNRISHVPAA---SFRACRNLTILWLHSNVLARIDAAAFTGLA 80

Query: 325 GLVLLDLSHNRFSGEI-PLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNM 383
            L  LDLS N     + P     L  L  L L    L    P     L  LQ + L  N 
Sbjct: 81  LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA 140

Query: 384 LSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGL 443
           L             L  L ++ N +S   +     L SL  L +  N+++   P     L
Sbjct: 141 LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200

Query: 444 KSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNK 503
             L  +   +NNLS    +A+     L+Y  +  N    +       +  +Q    S+++
Sbjct: 201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL-WAWLQKFRGSSSE 259

Query: 504 FMGFIPDAVG----MDLSDNLLHG 523
               +P  +       L+ N L G
Sbjct: 260 VPCSLPQRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 0.001
 Identities = 31/180 (17%), Positives = 52/180 (28%), Gaps = 20/180 (11%)

Query: 420 DSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNK 479
           +           +   +P+ +    + + +    N +S     +     NL    +  N 
Sbjct: 11  EPKVTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV 67

Query: 480 LSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLN 539
           L+            ++ +D S N  +  +                 P     L  L  L+
Sbjct: 68  LARIDAAAFTGLALLEQLDLSDNAQLRSVD----------------PATFHGLGRLHTLH 111

Query: 540 LSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPW 598
           L    L    PG    L +L+ L L  N+L          L  LT L L  N  S     
Sbjct: 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER 171

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 85.9 bits (211), Expect = 7e-19
 Identities = 49/276 (17%), Positives = 91/276 (32%), Gaps = 27/276 (9%)

Query: 326 LVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLS 385
             LLDL +N+ +         LK+L  L L NN +    P     L  L+ + LS N L 
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 386 GSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKS 445
             +P  +    Q L +  N      +          +  L  +  + SG       G+K 
Sbjct: 93  -ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 151

Query: 446 LEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFM 505
           L  +  +  N++           +L    +  NK++      L     +  +  S N   
Sbjct: 152 LSYIRIADTNITTIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 208

Query: 506 GFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSH 565
                ++                      L  L+L+ N L     GL   + ++ + L +
Sbjct: 209 AVDNGSLANT-----------------PHLRELHLNNNKLVKVPGGLADHKYIQVVYLHN 251

Query: 566 NSLTG------QIPGNISSLQELTLLNLSYNSFSGF 595
           N+++         PG  +     + ++L  N    +
Sbjct: 252 NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 287

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.5 bits (184), Expect = 2e-15
 Identities = 59/282 (20%), Positives = 91/282 (32%), Gaps = 19/282 (6%)

Query: 108 LEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPEL 167
              L L +N  T      F  L  L TL L  NK   + P A   L  L  L L  N +L
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QL 91

Query: 168 GGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDL--EKNNLTGNVHDFYQ 225
             +           L++L    N            L  +  ++L       +G  +  +Q
Sbjct: 92  KELPEKMP----KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147

Query: 226 SLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHL 285
            +  L+      +           SLT L LD N +       +  L  L  L LS N +
Sbjct: 148 GMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207

Query: 286 NYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSG------E 339
           +   +  L     L  L L+ N L                + ++ L +N  S        
Sbjct: 208 SAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHK----YIQVVYLHNNNISAIGSNDFC 263

Query: 340 IPLKITELKSLQALFLSNN-LLIGEI-PARIGNLTYLQVIDL 379
            P   T+  S   + L +N +   EI P+    +     + L
Sbjct: 264 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 71.6 bits (174), Expect = 4e-14
 Identities = 42/245 (17%), Positives = 88/245 (35%), Gaps = 7/245 (2%)

Query: 357 NNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPEL 416
           ++L + ++P  +       ++DL +N ++     +      L  LI+ NN +S       
Sbjct: 18  SDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF 75

Query: 417 DALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIA 476
             L  L+ L +S NQ+          L+ L + +     +  S+ + + +   ++  +  
Sbjct: 76  APLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN- 134

Query: 477 RNKLSGNLPNWLFSFQAIQMMDFSTNKFM----GFIPDAVGMDLSDNLLHGTIPKGLFQL 532
             K SG         + +  +  +         G  P    + L  N +       L  L
Sbjct: 135 PLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGL 194

Query: 533 QGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSF 592
             L  L LSFN +     G             +N+   ++PG ++  + + ++ L  N+ 
Sbjct: 195 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNI 254

Query: 593 SGFVP 597
           S    
Sbjct: 255 SAIGS 259

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.3 bits (98), Expect = 1e-04
 Identities = 35/189 (18%), Positives = 61/189 (32%), Gaps = 15/189 (7%)

Query: 59  QKLSSWVGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAF 118
           Q+L             V        VV +       SG  +     +  L ++ ++    
Sbjct: 103 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 162

Query: 119 TGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNF 178
           T   +   G    L  L L  NK   V   ++  L NL +L L  N              
Sbjct: 163 T---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL--AN 217

Query: 179 SMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTG---------NVHDFYQSLLV 229
           + +L +L  + N    ++P  L   K ++ + L  NN++            +    S   
Sbjct: 218 TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSG 276

Query: 230 LNLGSNRFS 238
           ++L SN   
Sbjct: 277 VSLFSNPVQ 285

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 85.8 bits (211), Expect = 2e-18
 Identities = 65/377 (17%), Positives = 132/377 (35%), Gaps = 26/377 (6%)

Query: 225 QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNH 284
              +   LG    + T+         +T L+ D   +       +  L  LT +N S+N 
Sbjct: 22  AEKMKTVLGKTNVTDTVSQ--TDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQ 77

Query: 285 LNYEIS-PRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLK 343
           L        L     +L+ +    D++                 + D+   +    +   
Sbjct: 78  LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 137

Query: 344 ITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIV-------GCF 396
                ++  +   + L   +  +    +T L+ +     +    I  N V          
Sbjct: 138 ELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT 197

Query: 397 QLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNL 456
            L +LI  NN +S      +    +L  L ++ NQ+      TLA L +L  +D ++N +
Sbjct: 198 NLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQI 253

Query: 457 SGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGM-- 514
           S      ++  T L    +  N++S   P    +      ++ +  + +  I +   +  
Sbjct: 254 SNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTY 311

Query: 515 -DLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIP 573
             L  N +    P  +  L  L+ L  + N +   V  L  L ++  L   HN ++   P
Sbjct: 312 LTLYFNNISDISP--VSSLTKLQRLFFANNKVSD-VSSLANLTNINWLSAGHNQISDLTP 368

Query: 574 GNISSLQELTLLNLSYN 590
             +++L  +T L L+  
Sbjct: 369 --LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 79.7 bits (195), Expect = 1e-16
 Identities = 75/393 (19%), Positives = 122/393 (31%), Gaps = 47/393 (11%)

Query: 128 GLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNP--ELGGVFPGWVGNFSMNLEKL 185
            L+      L        V      L  +  L         + GV        + NL ++
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSIDGV-----EYLN-NLTQI 71

Query: 186 DFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFA 245
           +FS N      P  L  L  L  + +  N +         + L      N     +    
Sbjct: 72  NFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK 129

Query: 246 ASAMSLTVLKLDNN---------------SVVGGIPTCIASLQALTHLNLSHNHLNYEIS 290
                  +    N                   G   T +  L  LT L       N    
Sbjct: 130 NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD 189

Query: 291 PRLVF-FEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKS 349
             ++     L  L  + N +S   P  I        L  L L+ N+        +  L +
Sbjct: 190 ISVLAKLTNLESLIATNNQISDITPLGILTN-----LDELSLNGNQLKD--IGTLASLTN 242

Query: 350 LQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLS 409
           L  L L+NN +    P  +  LT L  + L  N +S   PL  +     L L  N     
Sbjct: 243 LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLE-- 298

Query: 410 GEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTN 469
                 +  L +L  L +  N IS   P  ++ L  L+ + F++N +S     ++   TN
Sbjct: 299 --DISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV--SSLANLTN 352

Query: 470 LKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTN 502
           + + S   N++S   P  L +   I  +  +  
Sbjct: 353 INWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 79.7 bits (195), Expect = 1e-16
 Identities = 67/391 (17%), Positives = 118/391 (30%), Gaps = 51/391 (13%)

Query: 84  VVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFV 143
            +   L  T+++  V      L  +  L                 L+ L  ++ S N+  
Sbjct: 24  KMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLT 79

Query: 144 GVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYL 203
            + P  +  L  L ++++  N          + N +      +   +             
Sbjct: 80  DITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-------LKN 130

Query: 204 KSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVG 263
            +  +     +N   ++        +  L        L   A       +    N     
Sbjct: 131 LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS-- 188

Query: 264 GIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEK 323
              + +A L  L  L  ++N ++            L  L L+ N L              
Sbjct: 189 -DISVLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKDIGTLASLTN--- 242

Query: 324 AGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIP------------------ 365
             L  LDL++N+ S   PL  + L  L  L L  N +    P                  
Sbjct: 243 --LTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLE 298

Query: 366 --ARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLK 423
             + I NL  L  + L  N +S   P++     +L  L   NN +S      L  L ++ 
Sbjct: 299 DISPISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFANNKVSDV--SSLANLTNIN 354

Query: 424 ILDISNNQISGEIPLTLAGLKSLEIVDFSSN 454
            L   +NQIS   P  LA L  +  +  +  
Sbjct: 355 WLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 61.6 bits (148), Expect = 1e-10
 Identities = 59/308 (19%), Positives = 103/308 (33%), Gaps = 15/308 (4%)

Query: 324 AGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNM 383
           A  +   L     +  +    T+L  +  L       I  I   +  L  L  I+ S+N 
Sbjct: 22  AEKMKTVLGKTNVTDTVSQ--TDLDQVTTLQADRLG-IKSIDG-VEYLNNLTQINFSNNQ 77

Query: 384 LSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGL 443
           L+   PL      +L+ +++NNN ++           +   L  +       +       
Sbjct: 78  LTDITPLK--NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNL---- 131

Query: 444 KSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNK 503
            +L  ++ SSN +S     +         F      L             I     S   
Sbjct: 132 TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS 191

Query: 504 FMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDL 563
            +  + +   +  ++N +    P G+     L+ L+L+ N L   +  L  L +L  LDL
Sbjct: 192 VLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD-IGTLASLTNLTDLDL 248

Query: 564 SHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNLCLESSHGE 623
           ++N ++   P  +S L +LT L L  N  S   P              N    +      
Sbjct: 249 ANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNL 306

Query: 624 CNRTSLPL 631
            N T L L
Sbjct: 307 KNLTYLTL 314

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 60.0 bits (144), Expect = 3e-10
 Identities = 62/366 (16%), Positives = 118/366 (32%), Gaps = 54/366 (14%)

Query: 270 ASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLL 329
            +L       L   ++   +S      +++  L      +       I        L  +
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQTD--LDQVTTLQADRLGIK-----SIDGVEYLNNLTQI 71

Query: 330 DLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIP 389
           + S+N+ +   PLK   L  L  + ++NN +    P           +  +       + 
Sbjct: 72  NFSNNQLTDITPLK--NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK 129

Query: 390 L------------NIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQIS-GEI 436
                         I     L  L        G    +L  L +L  L+  +   +    
Sbjct: 130 NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD 189

Query: 437 PLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQM 496
              LA L +LE +  ++N +S      I   TNL   S+  N+L       L S   +  
Sbjct: 190 ISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTD 245

Query: 497 MDFSTNKFMGFIPDA-----VGMDLSDNLLHGTIP--------------------KGLFQ 531
           +D + N+     P +       + L  N +    P                      +  
Sbjct: 246 LDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISN 305

Query: 532 LQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNS 591
           L+ L YL L FN +   +  +  L  L+ L  ++N ++     ++++L  +  L+  +N 
Sbjct: 306 LKNLTYLTLYFNNISD-ISPVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQ 362

Query: 592 FSGFVP 597
            S   P
Sbjct: 363 ISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 54.2 bits (129), Expect = 2e-08
 Identities = 60/344 (17%), Positives = 111/344 (32%), Gaps = 28/344 (8%)

Query: 254 LKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPL 313
             L   +V   +      L  +T L      +   I   + +   L  ++ S N L+   
Sbjct: 27  TVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLTDIT 82

Query: 314 PSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTY 373
           P             L +L+          +I ++  L  L     L +        +   
Sbjct: 83  P-------------LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK 129

Query: 374 LQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQIS 433
                    + S +I              ++  N   +++P  +     ++   SN    
Sbjct: 130 NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD 189

Query: 434 GEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQA 493
             +   L  L+SL     ++N +S      I   TNL   S+  N+L       L S   
Sbjct: 190 ISVLAKLTNLESL---IATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTN 242

Query: 494 IQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFL--DGQVPG 551
           +  +D + N+     P +    L++  L       +  L GL  L            +  
Sbjct: 243 LTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP 302

Query: 552 LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGF 595
           +  L++L  L L  N+++   P  +SSL +L  L  + N  S  
Sbjct: 303 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV 344

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.6 bits (117), Expect = 7e-07
 Identities = 35/193 (18%), Positives = 63/193 (32%), Gaps = 31/193 (16%)

Query: 64  WVGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRIS 123
            + +     + +       ++  ++L    L       L  L+ L  L L++N  +    
Sbjct: 201 SLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP 258

Query: 124 TCFGGLSGLKTLDLSYNKFVGVVP--------------------DAIMKLRNLRELILKG 163
               GL+ L  L L  N+   + P                      I  L+NL  L L  
Sbjct: 259 --LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYF 316

Query: 164 NPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDF 223
           N  +  + P  V + +  L++L F+ N        SL  L ++  L    N ++      
Sbjct: 317 N-NISDISP--VSSLT-KLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTPLA 370

Query: 224 Y-QSLLVLNLGSN 235
               +  L L   
Sbjct: 371 NLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.8 bits (115), Expect = 1e-06
 Identities = 45/271 (16%), Positives = 85/271 (31%), Gaps = 30/271 (11%)

Query: 350 LQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLS 409
           L +  ++ +  I +I      L       L    ++ ++    +   Q+  L  +   + 
Sbjct: 1   LGSATITQDTPINQIFTD-TALAEKMKTVLGKTNVTDTVSQTDLD--QVTTLQADRLGIK 57

Query: 410 GEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTN 469
                 ++ L++L  ++ SNNQ++   P  L  L  L  +  ++N ++     A      
Sbjct: 58  S--IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLT 113

Query: 470 LKYFSIAR--------------------NKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIP 509
                  +                    N +S        +                   
Sbjct: 114 GLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLAN 173

Query: 510 DAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLT 569
                 L  +    +    L +L  LE L  + N +    P    L +L  L L+ N L 
Sbjct: 174 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL-GILTNLDELSLNGNQLK 232

Query: 570 GQIPGNISSLQELTLLNLSYNSFSGFVPWKQ 600
               G ++SL  LT L+L+ N  S   P   
Sbjct: 233 D--IGTLASLTNLTDLDLANNQISNLAPLSG 261

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.1 bits (108), Expect = 9e-06
 Identities = 14/102 (13%), Positives = 38/102 (37%), Gaps = 6/102 (5%)

Query: 63  SWVGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRI 122
           + +  N      ++      ++  + L   ++S      +  L+ L+ L  ++N  +   
Sbjct: 288 TNLELNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFANNKVSD-- 343

Query: 123 STCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
            +    L+ +  L   +N+   + P  +  L  + +L L   
Sbjct: 344 VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.2 bits (139), Expect = 8e-10
 Identities = 41/268 (15%), Positives = 89/268 (33%), Gaps = 13/268 (4%)

Query: 329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSI 388
           LDL+      ++  ++     + A     +  + +  A   +   +Q +DLS++++  S 
Sbjct: 5   LDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSF-MDQPLAEHFSPFRVQHMDLSNSVIEVST 62

Query: 389 PLNIVG-CFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLE 447
              I+  C +L  L +    LS  I   L    +L  L++S      E          L+
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA--------LQ 114

Query: 448 IVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGF 507
            +  S + L          +T         +         L  ++        +      
Sbjct: 115 TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC 174

Query: 508 IPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSF--NFLDGQVPGLYRLRSLRALDLSH 565
                       +L     +  FQL  L++L+LS   + +   +  L  + +L+ L +  
Sbjct: 175 PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 234

Query: 566 NSLTGQIPGNISSLQELTLLNLSYNSFS 593
               G +     +L  L +    + + +
Sbjct: 235 IVPDGTLQLLKEALPHLQINCSHFTTIA 262

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 4e-08
 Identities = 39/314 (12%), Positives = 89/314 (28%), Gaps = 41/314 (13%)

Query: 276 THLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNR 335
             L+L+  +L+ +++ RL+  + ++      + +  PL    +       +  +DLS++ 
Sbjct: 3   QTLDLTGKNLHPDVTGRLL-SQGVIAFRCPRSFMDQPLAEHFSPFR----VQHMDLSNSV 57

Query: 336 FSGEIPLKITE-LKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVG 394
                   I      LQ L L    L   I   +   + L  ++LS         L  + 
Sbjct: 58  IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL 117

Query: 395 CFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSN 454
                   +N +      +  +    +     I+   +SG                    
Sbjct: 118 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG-------------------- 157

Query: 455 NLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGM 514
                       +      S     +               M+     +    +     +
Sbjct: 158 ------------YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL 205

Query: 515 DLSD-NLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIP 573
            LS    +       L ++  L+ L +     DG +  L    +L  L ++ +  T    
Sbjct: 206 SLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLL--KEALPHLQINCSHFTTIAR 263

Query: 574 GNISSLQELTLLNL 587
             I + +   +  +
Sbjct: 264 PTIGNKKNQEIWGI 277

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (118), Expect = 3e-07
 Identities = 32/233 (13%), Positives = 83/233 (35%), Gaps = 21/233 (9%)

Query: 375 QVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISG 434
           Q +DL+   L   +   ++    ++A     + +   +  E  +   ++ +D+SN+ I  
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEV 60

Query: 435 E-IPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQA 493
             +   L+    L+ +      LS  + + + K +NL   +++                 
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 494 IQMMDFSTNKFMGFIPDAVGMDLS---------------DNLLHGTIPKGLFQLQGLEYL 538
            ++ + + +    F    V + ++                NL    +   + +   L +L
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180

Query: 539 NLSFNFL--DGQVPGLYRLRSLRALDLSH-NSLTGQIPGNISSLQELTLLNLS 588
           +LS + +  +      ++L  L+ L LS    +  +    +  +  L  L + 
Sbjct: 181 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 233

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 39/253 (15%), Positives = 84/253 (33%), Gaps = 16/253 (6%)

Query: 230 LNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEI 289
           L+L        +     S   +   +   + +   +    +  + + H++LS++ +    
Sbjct: 5   LDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVST 62

Query: 290 SPRLV-FFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELK 348
              ++    KL  L L    LS P+ + +A+ +    LV L+LS      E  L+     
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSN---LVRLNLSGCSGFSEFALQTLLSS 119

Query: 349 SLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQ---------LL 399
             +   L+ +         +          ++   LSG                    + 
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 179

Query: 400 ALIVNNNNLSGEIQPELDALDSLKILDISN-NQISGEIPLTLAGLKSLEIVDFSSNNLSG 458
             + ++  L  +   E   L+ L+ L +S    I  E  L L  + +L+ +        G
Sbjct: 180 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDG 239

Query: 459 SLNDAITKWTNLK 471
           +L        +L+
Sbjct: 240 TLQLLKEALPHLQ 252

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 4e-05
 Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 2/86 (2%)

Query: 514 MDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTG-QI 572
           +DL+   LH  +   L   QG+       +F+D  +   +    ++ +DLS++ +    +
Sbjct: 5   LDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTL 63

Query: 573 PGNISSLQELTLLNLSYNSFSGFVPW 598
            G +S   +L  L+L     S  +  
Sbjct: 64  HGILSQCSKLQNLSLEGLRLSDPIVN 89

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 43/268 (16%), Positives = 86/268 (32%), Gaps = 14/268 (5%)

Query: 207 KHLDLEKNNLTGNV--HDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSV-VG 263
           + LDL   NL  +V      Q ++      +     L     S   +  + L N+ + V 
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVS 61

Query: 264 GIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEK 323
            +   ++    L +L+L    L+  I   L     L+ L+LS          +   ++  
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 324 A-----GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVID 378
                      D +       +      +  L       NL   ++   +     L  +D
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 379 LSHNMLSGSIPLNIVGCFQLLALIV--NNNNLSGEIQPELDALDSLKILDISNNQISGEI 436
           LS +++  +           L  +      ++  E   EL  + +LK L +      G +
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241

Query: 437 PLTLAGLKSLEIVDFSSNNLSGSLNDAI 464
            L    L  L+I   + ++ +      I
Sbjct: 242 QLLKEALPHLQI---NCSHFTTIARPTI 266

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 3e-04
 Identities = 40/255 (15%), Positives = 84/255 (32%), Gaps = 15/255 (5%)

Query: 133 KTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSF 192
           +TLDL+        PD   +L +   +  +  P      P         ++ +D S +  
Sbjct: 3   QTLDLTGKNLH---PDVTGRLLSQGVIAFR-CPRSFMDQPLAEHFSPFRVQHMDLSNSVI 58

Query: 193 CGE-IPESLYYLKSLKHLDLEKNNLTGNVHDF---YQSLLVLNLGSNRFSGTLPCFAASA 248
               +   L     L++L LE   L+  + +      +L+ LNL               +
Sbjct: 59  EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS 118

Query: 249 MSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLN------YEISPRLVFFEKLLLL 302
               + +L+ +         +    A     ++  +L+       +     +      L+
Sbjct: 119 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 178

Query: 303 DLSFNDLSGPLPSKIAQTTEKAGLVLLDLSH-NRFSGEIPLKITELKSLQALFLSNNLLI 361
            L  +D          +  +   L  L LS       E  L++ E+ +L+ L +   +  
Sbjct: 179 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPD 238

Query: 362 GEIPARIGNLTYLQV 376
           G +      L +LQ+
Sbjct: 239 GTLQLLKEALPHLQI 253

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 42/260 (16%), Positives = 88/260 (33%), Gaps = 19/260 (7%)

Query: 178 FSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGN----VHDFYQSLLVLNLG 233
            S  +       +     + E     + ++H+DL  + +  +    +      L  L+L 
Sbjct: 21  LSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 79

Query: 234 SNRFSGTLPCFAASAMSLTVLKLD--NNSVVGGIPTCIASLQALTHLNL------SHNHL 285
             R S  +    A   +L  L L   +      + T ++S   L  LNL      +  H+
Sbjct: 80  GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHV 139

Query: 286 NYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKIT 345
              ++       +L L     N     L + + +        L          +   +  
Sbjct: 140 QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV--HLDLSDSVMLKNDCFQEFF 197

Query: 346 ELKSLQALFLSN-NLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVN 404
           +L  LQ L LS    +I E    +G +  L+ + +   +  G++ L          L +N
Sbjct: 198 QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPH---LQIN 254

Query: 405 NNNLSGEIQPELDALDSLKI 424
            ++ +   +P +    + +I
Sbjct: 255 CSHFTTIARPTIGNKKNQEI 274

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.0 bits (131), Expect = 4e-09
 Identities = 34/208 (16%), Positives = 77/208 (37%), Gaps = 14/208 (6%)

Query: 387 SIPLNIVGCF------QLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTL 440
           ++P  I   F      + +   +   +++  +    + L+S+  +  +N+ I     +  
Sbjct: 9   TVPTPIKQIFSDDAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQGI-- 64

Query: 441 AGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFS 500
             L ++  +  + N L+     A  K     +    + K   +L +     +++ +    
Sbjct: 65  QYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDL-KKLKSLSLEHNG 123

Query: 501 TNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRA 560
            +   G +       L       T    L +L  L+ L+L  N +   +  L  L  L+ 
Sbjct: 124 ISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD-IVPLAGLTKLQN 182

Query: 561 LDLSHNSLTGQIPGNISSLQELTLLNLS 588
           L LS N ++      ++ L+ L +L L 
Sbjct: 183 LYLSKNHISD--LRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 31/179 (17%), Positives = 60/179 (33%), Gaps = 6/179 (3%)

Query: 417 DALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIA 476
           DA       ++    ++  +  T   L S++ +  +++++       I    N+    + 
Sbjct: 21  DAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLN 76

Query: 477 RNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLE 536
            NKL+   P           +D +  K +  + D   +       +G             
Sbjct: 77  GNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQL 136

Query: 537 YLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGF 595
                 N     +  L RL  L  L L  N ++  +P  ++ L +L  L LS N  S  
Sbjct: 137 ESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL 193

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 7/82 (8%)

Query: 312 PLPSKIAQTTEKAGL---VLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARI 368
            +P+ I Q          +  +L     +  +     EL S+  +  +N+ +       I
Sbjct: 9   TVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--I 64

Query: 369 GNLTYLQVIDLSHNMLSGSIPL 390
             L  +  + L+ N L+   PL
Sbjct: 65  QYLPNVTKLFLNGNKLTDIKPL 86

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.004
 Identities = 36/195 (18%), Positives = 69/195 (35%), Gaps = 15/195 (7%)

Query: 111 LVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGV 170
             L   + T  ++     L+ +  +  + +    V    I  L N+ +L L GN      
Sbjct: 29  DNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIK 84

Query: 171 FPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVL 230
                     NL+ L + F         S             ++N   +++       + 
Sbjct: 85  PLA-------NLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 137

Query: 231 NLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEIS 290
           +L       T     +    L  L L++N +   +P  +A L  L +L LS NH++ ++ 
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-DLR 194

Query: 291 PRLVFFEKLLLLDLS 305
             L   + L +L+L 
Sbjct: 195 A-LAGLKNLDVLELF 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 3e-08
 Identities = 46/226 (20%), Positives = 79/226 (34%), Gaps = 24/226 (10%)

Query: 321 TEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLS 380
           ++ A  + ++      +  +P  +   K    L LS NLL     A +   T L  ++L 
Sbjct: 7   SKVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 381 HNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTL 440
                    L + G   +L  +  ++N    +      L +L +LD+S N+++      L
Sbjct: 64  RAE---LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120

Query: 441 AGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFS 500
            GL  L+ +    N L       +T    L+  S+A N L+      L   + +  +   
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180

Query: 501 TNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLD 546
            N                     TIPKG F    L +  L  N   
Sbjct: 181 ENSLY------------------TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 4e-08
 Identities = 36/209 (17%), Positives = 67/209 (32%), Gaps = 13/209 (6%)

Query: 367 RIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILD 426
            +  +     ++     L+ ++P ++     +L L  + N L       L     L  L+
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPKDTTILHL--SENLLYTFSLATLMPYTRLTQLN 61

Query: 427 ISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPN 486
           +   +++         L  L  +D S N L             L    ++ N+L+     
Sbjct: 62  LDRAELTKLQVDG--TLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLG 118

Query: 487 WLFSFQAIQMMDFSTNKFMGFIPDAVG-------MDLSDNLLHGTIPKGLFQLQGLEYLN 539
            L     +Q +    N+     P  +        + L++N L       L  L+ L+ L 
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 540 LSFNFLDGQVPGLYRLRSLRALDLSHNSL 568
           L  N L     G +    L    L  N  
Sbjct: 179 LQENSLYTIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 8e-08
 Identities = 42/182 (23%), Positives = 60/182 (32%), Gaps = 4/182 (2%)

Query: 177 NFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNR 236
           +   +   L  S N        +L     L  L+L++  LT    D    +L     S+ 
Sbjct: 28  DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHN 87

Query: 237 FSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFF 296
              +LP    +  +LTVL +  N +       +  L  L  L L  N L       L   
Sbjct: 88  QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147

Query: 297 EKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLS 356
            KL  L L+ N+L+      +        L  L L  N     IP        L   FL 
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLEN---LDTLLLQENSLY-TIPKGFFGSHLLPFAFLH 203

Query: 357 NN 358
            N
Sbjct: 204 GN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 2e-07
 Identities = 34/179 (18%), Positives = 45/179 (25%), Gaps = 3/179 (1%)

Query: 108 LEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPEL 167
              L LS N             + L  L+L   +           L  L  L L  N   
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT--KLQVDGTLPVLGTLDLSHNQLQ 90

Query: 168 GGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSL 227
                G        L+       S        L  L+ L     E   L   +      L
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150

Query: 228 LVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLN 286
             L+L +N  +           +L  L L  NS+   IP        L    L  N   
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 5e-07
 Identities = 31/178 (17%), Positives = 43/178 (24%), Gaps = 3/178 (1%)

Query: 132 LKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNS 191
              L LS N         +M    L +L L           G +          +   + 
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSL 92

Query: 192 FCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSL 251
                      +  +    L   +L          L  L L  N      P        L
Sbjct: 93  PLLGQTLPALTVLDVSFNRL--TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150

Query: 252 TVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDL 309
             L L NN++       +  L+ L  L L  N   Y I         L    L  N  
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (112), Expect = 2e-06
 Identities = 49/208 (23%), Positives = 75/208 (36%), Gaps = 9/208 (4%)

Query: 415 ELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFS 474
           E+  + S   ++     ++  +P  L   K   I+  S N L       +  +T L   +
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 475 IARNKLSGNLPNW----LFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLF 530
           + R +L+    +     L +         S       +P    +D+S N L       L 
Sbjct: 62  LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 531 QLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDL-SHNSLTGQIPGNISSLQELTLLNLSY 589
            L  L+ L L  N L    PGL            ++N+LT    G ++ L+ L  L L  
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 590 NSFSGFVPWKQGYQKFPGAF-AGNPNLC 616
           NS         G    P AF  GNP LC
Sbjct: 182 NSLYTIPKGFFGSHLLPFAFLHGNPWLC 209

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.8 bits (120), Expect = 1e-07
 Identities = 26/213 (12%), Positives = 57/213 (26%), Gaps = 28/213 (13%)

Query: 397 QLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNL 456
             + +    +N++  +      LD +  L      ++  I   +  L +L  ++   N +
Sbjct: 20  NAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQI 75

Query: 457 SGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKF------------ 504
           +                S    K    +                T+              
Sbjct: 76  TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLY 135

Query: 505 ---------MGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRL 555
                               LS      +    L  L  L  L    N +   +  L  L
Sbjct: 136 LDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD-ISPLASL 194

Query: 556 RSLRALDLSHNSLTGQIPGNISSLQELTLLNLS 588
            +L  + L +N ++   P  +++   L ++ L+
Sbjct: 195 PNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 3e-05
 Identities = 27/242 (11%), Positives = 63/242 (26%), Gaps = 34/242 (14%)

Query: 324 AGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNM 383
           A  + +    +  +  +     +L  +  L       +  I   +  L  L  ++L  N 
Sbjct: 19  ANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTG-VTTIEG-VQYLNNLIGLELKDNQ 74

Query: 384 LSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGL 443
           +     L  +     +  +  + N    +           +   S           L+ L
Sbjct: 75  I---TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131

Query: 444 KSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNK 503
           + L +           + +            ++      +    L +   +  +    NK
Sbjct: 132 QVLYLDLNQ-------ITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNK 184

Query: 504 FMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDL 563
                P                   L  L  L  ++L  N +   V  L    +L  + L
Sbjct: 185 ISDISP-------------------LASLPNLIEVHLKNNQISD-VSPLANTSNLFIVTL 224

Query: 564 SH 565
           ++
Sbjct: 225 TN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 38/214 (17%), Positives = 69/214 (32%), Gaps = 19/214 (8%)

Query: 250 SLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDL 309
           +   +    ++V   +    A L  +T L+     +   I   + +   L+ L+L  N +
Sbjct: 20  NAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKDNQI 75

Query: 310 SGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGE------ 363
           +   P K      +  L    L +      +    T   +   +     L          
Sbjct: 76  TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLY 135

Query: 364 -----IPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDA 418
                I           +  LS      S    +    +L  L  ++N +S      L +
Sbjct: 136 LDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--ISPLAS 193

Query: 419 LDSLKILDISNNQISGEIPLTLAGLKSLEIVDFS 452
           L +L  + + NNQIS   P  LA   +L IV  +
Sbjct: 194 LPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 36/232 (15%), Positives = 60/232 (25%), Gaps = 24/232 (10%)

Query: 128 GLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNP--ELGGVFPGWVGNFSMNLEKL 185
            L+    +    +     V  A   L  +  L   G     + GV       +  NL  L
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTIEGV------QYLNNLIGL 68

Query: 186 DFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFA 245
           +   N      P       +   L          +        +    +     T     
Sbjct: 69  ELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGL 128

Query: 246 ASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLS 305
           ++   L          +  I              LS  +        L    KL  L   
Sbjct: 129 SNLQVL-------YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKAD 181

Query: 306 FNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSN 357
            N +S   P  +A       L+ + L +N+ S   PL      +L  + L+N
Sbjct: 182 DNKISDISP--LASLPN---LIEVHLKNNQISDVSPLA--NTSNLFIVTLTN 226

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.6 bits (110), Expect = 7e-07
 Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 4/107 (3%)

Query: 329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSI 388
           L L+H   +  +   + +L  +  L LS+N L    PA +  L  L+V+  S N L    
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVD 59

Query: 389 PLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGE 435
            +  +   Q L L  NN          L +   L +L++  N +  E
Sbjct: 60  GVANLPRLQELLLC-NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.5 bits (107), Expect = 2e-06
 Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 6/109 (5%)

Query: 351 QALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSG 410
           + L L++  L   +   +  L  +  +DLSHN L    P  +     L   ++  ++ + 
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLE--VLQASDNAL 55

Query: 411 EIQPELDALDSLKILDISNNQI-SGEIPLTLAGLKSLEIVDFSSNNLSG 458
           E    +  L  L+ L + NN++        L     L +++   N+L  
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.6 bits (102), Expect = 6e-06
 Identities = 28/104 (26%), Positives = 37/104 (35%), Gaps = 25/104 (24%)

Query: 514 MDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSL--------------- 558
           + L+   L  T+   L QL  + +L+LS N L    P L  LR L               
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 559 -------RALDLSHNSLTG-QIPGNISSLQELTLLNLSYNSFSG 594
                  + L L +N L        + S   L LLNL  NS   
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (96), Expect = 5e-05
 Identities = 26/116 (22%), Positives = 37/116 (31%), Gaps = 3/116 (2%)

Query: 185 LDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCF 244
           L  +       +   L  L  + HLDL  N L            +  L ++  +      
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 245 AASAMSLTVLKLDNNSVVGG-IPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKL 299
            A+   L  L L NN +        + S   L  LNL  N L  E   +    E L
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 3e-04
 Identities = 23/109 (21%), Positives = 37/109 (33%), Gaps = 8/109 (7%)

Query: 111 LVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGV 170
           L L+    T  +      L  +  LDLS+N+   + P A+  LR L             +
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEV----LQASDNAL 55

Query: 171 FPGWVGNFSMNLEKLDFSFNSF-CGEIPESLYYLKSLKHLDLEKNNLTG 218
                      L++L    N        + L     L  L+L+ N+L  
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.8 bits (82), Expect = 0.004
 Identities = 19/109 (17%), Positives = 37/109 (33%), Gaps = 7/109 (6%)

Query: 278 LNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFS 337
           L+L+H  L   +   L     +  LDLS N L    P+           + +  + +   
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA-----LAALRCLEVLQASDNAL 55

Query: 338 GEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSG 386
             +       +  + L  +N L        + +   L +++L  N L  
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.5 bits (81), Expect = 0.004
 Identities = 23/137 (16%), Positives = 41/137 (29%), Gaps = 23/137 (16%)

Query: 423 KILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSG 482
           ++L +++  ++  +   L  L  +  +D S N L      A+     L+    + N L  
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALEN 57

Query: 483 NLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLL-HGTIPKGLFQLQGLEYLNLS 541
                                          + L +N L      + L     L  LNL 
Sbjct: 58  VDGVANLPRLQE-------------------LLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 98

Query: 542 FNFLDGQVPGLYRLRSL 558
            N L  +     RL  +
Sbjct: 99  GNSLCQEEGIQERLAEM 115

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 48.3 bits (113), Expect = 2e-06
 Identities = 53/312 (16%), Positives = 84/312 (26%), Gaps = 33/312 (10%)

Query: 302 LDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLI 361
           L+L+   LS  LP              L  S N  + E+P     LKSL     +   L 
Sbjct: 43  LELNNLGLSS-LPELPPHLES------LVASCNSLT-ELPELPQSLKSLLVDNNNLKALS 94

Query: 362 GEIPA---RIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDA 418
              P       +   L+ +    N     I        + L  +  +         +L+ 
Sbjct: 95  DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE 154

Query: 419 LDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARN 478
           L  L+ L       +    L       L +    + N        +     L       N
Sbjct: 155 LPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNN 214

Query: 479 KLSGNLPNWLF---------------SFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHG 523
            L                                   +      + +        N    
Sbjct: 215 LLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSN 274

Query: 524 TIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELT 583
            I         LE LN+S N L  ++P L     L  L  S N L  ++P    +L++  
Sbjct: 275 EIRSLCDLPPSLEELNVSNNKLI-ELPAL--PPRLERLIASFNHLA-EVPELPQNLKQ-- 328

Query: 584 LLNLSYNSFSGF 595
            L++ YN    F
Sbjct: 329 -LHVEYNPLREF 339

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.7 bits (109), Expect = 5e-06
 Identities = 28/118 (23%), Positives = 40/118 (33%), Gaps = 33/118 (27%)

Query: 331 LSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPL 390
              N  S EI        SL+ L +SNN LI E+PA    L  L     S N L+  +P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL---IASFNHLA-EVP- 320

Query: 391 NIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEI 448
                                     +   +LK L +  N +  E P     ++ L +
Sbjct: 321 --------------------------ELPQNLKQLHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.6 bits (106), Expect = 1e-05
 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 9/93 (9%)

Query: 404 NNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDA 463
             N  S EI+   D   SL+ L++SNN++  E+P   A    LE +  S N+L+  + + 
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELP---ALPPRLERLIASFNHLA-EVPEL 322

Query: 464 ITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQM 496
                NLK   +  N L    P+   S + ++M
Sbjct: 323 P---QNLKQLHVEYNPLRE-FPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.2 bits (105), Expect = 2e-05
 Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 12/100 (12%)

Query: 277 HLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRF 336
                 N  + EI         L  L++S N L   LP+   +      L  L  S N  
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPR------LERLIASFNHL 316

Query: 337 SGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQV 376
           + E+P      ++L+ L +  N L  E P    ++  L++
Sbjct: 317 A-EVP---ELPQNLKQLHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.6 bits (93), Expect = 5e-04
 Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 6/89 (6%)

Query: 187 FSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAA 246
           +  N+   EI        SL+ L++  N L   +      L  L    N  +  +P    
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLIASFNHLA-EVP---E 321

Query: 247 SAMSLTVLKLDNNSVVGGIPTCIASLQAL 275
              +L  L ++ N +    P    S++ L
Sbjct: 322 LPQNLKQLHVEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.8 bits (91), Expect = 8e-04
 Identities = 17/103 (16%), Positives = 32/103 (31%), Gaps = 8/103 (7%)

Query: 63  SWVGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRI 122
               S                +        + S ++         LE L +S+N    ++
Sbjct: 241 ELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN----KL 296

Query: 123 STCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNP 165
                    L+ L  S+N    V        +NL++L ++ NP
Sbjct: 297 IELPALPPRLERLIASFNHLAEVPEL----PQNLKQLHVEYNP 335

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.4 bits (90), Expect = 0.001
 Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 15/100 (15%)

Query: 137 LSYNKFVGVVPDAIMKLRNLRELILKGNP--ELGGVFPGWVGNFSMNLEKLDFSFNSFCG 194
              N     +        +L EL +  N   EL  + P         LE+L  SFN    
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPP--------RLERLIASFNHL-A 317

Query: 195 EIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGS 234
           E+PE     ++LK L +E N L     D  +S+  L + S
Sbjct: 318 EVPEL---PQNLKQLHVEYNPLRE-FPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.9 bits (86), Expect = 0.003
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 534 GLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFS 593
               L L+   L   +P L     L +L  S NSLT ++P    SL+ L + N +  + S
Sbjct: 39  QAHELELNNLGL-SSLPEL--PPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALS 94

Query: 594 GFVPW 598
              P 
Sbjct: 95  DLPPL 99

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.0 bits (110), Expect = 2e-06
 Identities = 27/187 (14%), Positives = 58/187 (31%), Gaps = 7/187 (3%)

Query: 397 QLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNL 456
           + +  ++   N++  +      LD +  L      I   I   +  L +L  ++FS+N L
Sbjct: 19  EKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQL 74

Query: 457 SGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDL 516
           +                +  +      L N           +  T+         +    
Sbjct: 75  TDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 134

Query: 517 SDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTG-QIPGN 575
             +     I          +    S    D  +  L  L +L  LD+S N ++   +   
Sbjct: 135 LSSNTISDISALSGLTSLQQLNFSSNQVTD--LKPLANLTTLERLDISSNKVSDISVLAK 192

Query: 576 ISSLQEL 582
           +++L+ L
Sbjct: 193 LTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 27/193 (13%), Positives = 65/193 (33%), Gaps = 7/193 (3%)

Query: 403 VNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLND 462
           +  +    +I  +  AL       +    ++  +  +   L  +  +      +  S+ D
Sbjct: 2   ITQDTPINQIFTD-TALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIK-SI-D 56

Query: 463 AITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLH 522
            +    NL   + + N+L+   P    +     +M+ +    +  + +   +       +
Sbjct: 57  GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN 116

Query: 523 GTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQEL 582
                   +           +     +  L  L SL+ L+ S N +T   P  +++L  L
Sbjct: 117 QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTL 174

Query: 583 TLLNLSYNSFSGF 595
             L++S N  S  
Sbjct: 175 ERLDISSNKVSDI 187

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 6e-06
 Identities = 14/90 (15%), Positives = 31/90 (34%), Gaps = 5/90 (5%)

Query: 326 LVLLDLSHNRFSGEIPLKITE-LKSLQALFLSNNLL----IGEIPARIGNLTYLQVIDLS 380
           +  LD+     S     ++   L+  Q + L +  L      +I + +     L  ++L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 381 HNMLSGSIPLNIVGCFQLLALIVNNNNLSG 410
            N L       ++   Q  +  +   +L  
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 2e-05
 Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 12/101 (11%)

Query: 266 PTCIASLQALTHLNLSHNHLNYE----ISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTT 321
                    L  L L+   ++      ++  L+    L  LDLS N L      ++ ++ 
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 322 EKAGLVL--LDLSHNRFSGEIPLKITELKSLQALFLSNNLL 360
            + G +L  L L    +S E+         LQAL      L
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEME------DRLQALEKDKPSL 456

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 5e-05
 Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 13/91 (14%)

Query: 348 KSLQALFLSNNLL----IGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQ-----L 398
             L+ L+L++  +       + A +     L+ +DLS+N L  +  L +V   +     L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 399 LALIVNNNNLSGEIQPELDALD----SLKIL 425
             L++ +   S E++  L AL+    SL+++
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 7e-05
 Identities = 17/121 (14%), Positives = 27/121 (22%), Gaps = 6/121 (4%)

Query: 514 MDLSDNLLHGTIPKGLF-QLQGLEYLNLSFNFLDGQ-----VPGLYRLRSLRALDLSHNS 567
           +D+    L       L   LQ  + + L    L           L    +L  L+L  N 
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 568 LTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNLCLESSHGECNRT 627
           L       +    +     +   S         G           P L            
Sbjct: 67  LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD 126

Query: 628 S 628
           +
Sbjct: 127 A 127

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 7e-05
 Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 8/86 (9%)

Query: 179 SMNLEKLDFSFNSFCGE-IPESLYYLKSLKHLDLEKNNLT-------GNVHDFYQSLLVL 230
           S++++ LD            E L  L+  + + L+   LT        +      +L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 231 NLGSNRFSGTLPCFAASAMSLTVLKL 256
           NL SN             +     K+
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKI 86

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 8e-05
 Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 15/93 (16%)

Query: 326 LVLLDLSHNRFSGE----IPLKITELKSLQALFLSNNLLIGEIPARIG-----NLTYLQV 376
           L +L L+    S      +   +    SL+ L LSNN L      ++          L+ 
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430

Query: 377 IDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLS 409
           + L     S  +        +L AL  +  +L 
Sbjct: 431 LVLYDIYWSEEME------DRLQALEKDKPSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 9e-05
 Identities = 12/75 (16%), Positives = 28/75 (37%), Gaps = 5/75 (6%)

Query: 421 SLKILDISNNQISGE-IPLTLAGLKSLEIVDFSSNNLSG----SLNDAITKWTNLKYFSI 475
            ++ LDI   ++S       L  L+  ++V      L+      ++ A+     L   ++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 476 ARNKLSGNLPNWLFS 490
             N+L     + +  
Sbjct: 63  RSNELGDVGVHCVLQ 77

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 1e-04
 Identities = 14/105 (13%), Positives = 31/105 (29%), Gaps = 5/105 (4%)

Query: 398 LLALIVNNNNLSGEIQPEL-DALDSLKILDISNNQISGE----IPLTLAGLKSLEIVDFS 452
           + +L +    LS     EL   L   +++ + +  ++      I   L    +L  ++  
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 453 SNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMM 497
           SN L       + +        I +  L                +
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTL 108

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 1e-04
 Identities = 15/137 (10%), Positives = 39/137 (28%), Gaps = 5/137 (3%)

Query: 374 LQVIDLSHNMLSGSIPLNIVGCFQLL-ALIVNNNNLSGE----IQPELDALDSLKILDIS 428
           +Q +D+    LS +    ++   Q    + +++  L+      I   L    +L  L++ 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 429 NNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWL 488
           +N++       +              +L                          +L + L
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 489 FSFQAIQMMDFSTNKFM 505
                +Q++        
Sbjct: 124 LGDAGLQLLCEGLLDPQ 140

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 2e-04
 Identities = 14/91 (15%), Positives = 27/91 (29%), Gaps = 5/91 (5%)

Query: 226 SLLVLNLGSNRFSGT-LPCFAASAMSLTVLKLDNNSV----VGGIPTCIASLQALTHLNL 280
            +  L++     S               V++LD+  +       I + +    AL  LNL
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 281 SHNHLNYEISPRLVFFEKLLLLDLSFNDLSG 311
             N L       ++   +     +    L  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 8e-04
 Identities = 16/89 (17%), Positives = 27/89 (30%), Gaps = 5/89 (5%)

Query: 249 MSLTVLKLDNNSVV-GGIPTCIASLQALTHLNLSHNHLNYE----ISPRLVFFEKLLLLD 303
           + +  L +    +        +  LQ    + L    L       IS  L     L  L+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 304 LSFNDLSGPLPSKIAQTTEKAGLVLLDLS 332
           L  N+L       + Q  +     +  LS
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLS 90

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 8e-04
 Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 13/94 (13%)

Query: 394 GCFQLLALIVNNNNLSGE----IQPELDALDSLKILDISNNQISGEIPLTLAG-----LK 444
               L  L + + ++S      +   L A  SL+ LD+SNN +     L L         
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 445 SLEIVDFSSNNLSG----SLNDAITKWTNLKYFS 474
            LE +       S      L        +L+  S
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 9e-04
 Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 9/91 (9%)

Query: 242 PCFAASAMSLTVLKLDNNSV----VGGIPTCIASLQALTHLNLSHNHLNYEISPRLV--- 294
                    L VL L +  V       +   + +  +L  L+LS+N L      +LV   
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 295 --FFEKLLLLDLSFNDLSGPLPSKIAQTTEK 323
                 L  L L     S  +  ++    + 
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQALEKD 452

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 0.001
 Identities = 22/145 (15%), Positives = 33/145 (22%), Gaps = 15/145 (10%)

Query: 485 PNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNF 544
                +                         L D  +             L  L L+   
Sbjct: 321 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 380

Query: 545 LDGQVP-----GLYRLRSLRALDLSHNSLTGQIPGNISSLQE-----LTLLNLSYNSFSG 594
           +           L    SLR LDLS+N L       +          L  L L    +S 
Sbjct: 381 VSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 440

Query: 595 FVPWKQGYQKFPGAFAGNPNLCLES 619
                +   +        P+L + S
Sbjct: 441 -----EMEDRLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 0.002
 Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 5/68 (7%)

Query: 155 NLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSF----CGEIPESLYYLKSLKHLD 210
           +++ L ++   EL       +       + +           C +I  +L    +L  L+
Sbjct: 3   DIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 211 LEKNNLTG 218
           L  N L  
Sbjct: 62  LRSNELGD 69

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.1 bits (102), Expect = 3e-05
 Identities = 43/311 (13%), Positives = 78/311 (25%), Gaps = 40/311 (12%)

Query: 322 EKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGE----IPARIGNLTYLQVI 377
           E   L L  ++       +   + E  S++ + LS N +  E    +   I +   L++ 
Sbjct: 6   EGKSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 64

Query: 378 DLSHNMLSGSIPLNIVGCFQLLALIVNNNNLS---GEIQPELDALDSLKILDISNNQISG 434
           + S                 LL  ++    L                  I  +S +    
Sbjct: 65  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 124

Query: 435 EIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAI 494
            + L   GL        +      ++N        L+     RN+L              
Sbjct: 125 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 184

Query: 495 QMMDFSTNKFMGFIPDAVGMDLSDNLLH--------------------GTIPKGLFQLQG 534
             +  +       I       L    L                       +   L     
Sbjct: 185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 244

Query: 535 LEYLNLSFNFLDG-------QVPGLYRLRSLRALDLSHNSLTGQIPGNISS-----LQEL 582
           L  L L+   L                   L+ L L +N +       + +     + +L
Sbjct: 245 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 304

Query: 583 TLLNLSYNSFS 593
             L L+ N FS
Sbjct: 305 LFLELNGNRFS 315

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 43.3 bits (100), Expect = 6e-05
 Identities = 40/343 (11%), Positives = 89/343 (25%), Gaps = 39/343 (11%)

Query: 254 LKLDNNSVVG--GIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSG 311
           LKLD  +      +   +    ++  + LS N +                      + + 
Sbjct: 10  LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIG--------------------TEAAR 49

Query: 312 PLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNL 371
            L   IA   +       D+   R   EIP  +  L          + +     A     
Sbjct: 50  WLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 109

Query: 372 TYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQ 431
               +  LS +     + L+  G        +        +  +      L+ +    N+
Sbjct: 110 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 169

Query: 432 ISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSF 491
           +            +         +    + + I                       L   
Sbjct: 170 LENGSM----KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN 225

Query: 492 QAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQ------LQGLEYLNLSFNFL 545
               +   +    +   P+   + L+D LL       +          GL+ L L +N +
Sbjct: 226 TFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 285

Query: 546 DGQVPG------LYRLRSLRALDLSHNSLTGQIPGNISSLQEL 582
           +             ++  L  L+L+ N    +    +  ++E+
Sbjct: 286 ELDAVRTLKTVIDEKMPDLLFLELNGNRF-SEEDDVVDEIREV 327

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.5 bits (90), Expect = 0.001
 Identities = 14/92 (15%), Positives = 32/92 (34%), Gaps = 5/92 (5%)

Query: 530 FQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQ----IPGNISSLQELTLL 585
            + + L+   ++          L    S++ + LS N++  +    +  NI+S ++L + 
Sbjct: 5   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 64

Query: 586 NLSYNSFSGFVP-WKQGYQKFPGAFAGNPNLC 616
             S            +  +    A    P L 
Sbjct: 65  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLH 96

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.6 bits (85), Expect = 0.004
 Identities = 16/107 (14%), Positives = 32/107 (29%), Gaps = 7/107 (6%)

Query: 64  WVGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQV-HPRLCKLSFLEFLVLSSNAFTGRI 122
              S          N +   +    L+    +  V      +   L+ L L  N      
Sbjct: 230 LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA 289

Query: 123 -----STCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
                +     +  L  L+L+ N+F     D + ++R +     +G 
Sbjct: 290 VRTLKTVIDEKMPDLLFLELNGNRF-SEEDDVVDEIREVFSTRGRGE 335

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 6e-05
 Identities = 29/148 (19%), Positives = 50/148 (33%), Gaps = 7/148 (4%)

Query: 309 LSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARI 368
           L+  L  + AQ T       LDL   +    I      L    A+  S+N +        
Sbjct: 3   LTAELIEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR--KLDGF 59

Query: 369 GNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSG----EIQPELDALDSLKI 424
             L  L+ + +++N +             L  LI+ NN+L      +    L +L  L I
Sbjct: 60  PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI 119

Query: 425 LDISNNQISGEIPLTLAGLKSLEIVDFS 452
           L              +  +  + ++DF 
Sbjct: 120 LRNPVTNKKHYRLYVIYKVPQVRVLDFQ 147

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 540 LSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPW 598
           L+   ++ Q          R LDL    +   I    ++L +   ++ S N       +
Sbjct: 3   LTAELIE-QAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGF 59

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 16/104 (15%), Positives = 30/104 (28%)

Query: 64  WVGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRIS 123
               N       +    +   V + L    +    +         E  +  +N      +
Sbjct: 135 QDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPN 194

Query: 124 TCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPEL 167
             F G SG   LD+S  +   +    +  L+ LR        +L
Sbjct: 195 DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKL 238

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.003
 Identities = 5/37 (13%), Positives = 13/37 (35%)

Query: 552 LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLS 588
            +       LD+S   +       + +L++L   +  
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 35/180 (19%), Positives = 66/180 (36%), Gaps = 14/180 (7%)

Query: 421 SLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAIT-KWTNLKYFSIARNK 479
               +D +   +  EIP  +        +  + N L    +D +  +  +L    + RN+
Sbjct: 9   EGTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ 65

Query: 480 LSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVG-------MDLSDNLLHGTIPKGLFQL 532
           L+G  PN       IQ +    NK                 ++L DN +   +P     L
Sbjct: 66  LTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL 125

Query: 533 QGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSF 592
             L  LNL+ N  +      +    LR   L+  +     P   S ++++ + +L ++ F
Sbjct: 126 NSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP---SKVRDVQIKDLPHSEF 182

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 6/96 (6%)

Query: 122 ISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMN 181
            +  F GL  LKTL+L  N+   V+P +   L +L  L L  NP        W   F+  
Sbjct: 94  SNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW---FAEW 150

Query: 182 LEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLT 217
           L K   +  +     P     ++ ++  DL  +   
Sbjct: 151 LRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEFK 183

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 23/172 (13%), Positives = 48/172 (27%), Gaps = 22/172 (12%)

Query: 414 PELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITK-WTNLKY 472
           P+         L  + +    +    L G ++L  +   +      L     +    L+ 
Sbjct: 2   PDACCPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRN 60

Query: 473 FSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQL 532
            +I ++ L    P+       +  ++ S N                     ++     Q 
Sbjct: 61  LTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE------------------SLSWKTVQG 102

Query: 533 QGLEYLNLSFNFL--DGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQEL 582
             L+ L LS N L     +  L R        +    L     G ++ +   
Sbjct: 103 LSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNA 154

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	681
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.85
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.79
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.78
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.78
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.67
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.65
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.64
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.62
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.55
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.51
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.44
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.42
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.42
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.38
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.36
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.34
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.15
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.11
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.11
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.06
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.17
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.87
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.46
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.19
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.72
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.36

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=4e-40  Score=336.69  Aligned_cols=289  Identities=29%  Similarity=0.474  Sum_probs=225.7

Q ss_pred             HHhHHHHHHHHhcCCCCCCCCCCC-CCCCCCC--CCceeecCCC--CcEEEEEcCCCCCcc--cccccccCCCCCCEEEC
Q 005711           41 LEDKASLLLFKSLVQDPTQKLSSW-VGSNCTN--WTGVACNFQT--GHVVSINLTDTSLSG--QVHPRLCKLSFLEFLVL  113 (681)
Q Consensus        41 ~~~~~~l~~~~~~~~~~~~~~~~w-~~~~cc~--w~gv~c~~~~--~~v~~L~L~~~~l~g--~~~~~l~~l~~L~~L~L  113 (681)
                      ++|++||++||+++.+|. .+++| .+.|||.  |+||+|+...  +||++|+|+++++.|  .+|+.++++++|++|+|
T Consensus         5 ~~e~~aLl~~k~~~~~~~-~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~L   83 (313)
T d1ogqa_           5 PQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYI   83 (313)
T ss_dssp             HHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEE
T ss_pred             HHHHHHHHHHHHHCCCCC-cCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCcccccccc
Confidence            466679999999998874 68899 6789994  9999998543  489999999999988  57899999999999999


Q ss_pred             CC-CcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCCcC
Q 005711          114 SS-NAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSF  192 (681)
Q Consensus       114 s~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l  192 (681)
                      ++ |.++|.+|..|+++++|++|+|++|++.+..|..+..+.+|+++++++| ...+.+|..++++ ++|+++++++|.+
T Consensus        84 s~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N-~~~~~~p~~l~~l-~~L~~l~l~~n~l  161 (313)
T d1ogqa_          84 GGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN-ALSGTLPPSISSL-PNLVGITFDGNRI  161 (313)
T ss_dssp             EEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSS-EEESCCCGGGGGC-TTCCEEECCSSCC
T ss_pred             ccccccccccccccccccccchhhhccccccccccccccchhhhcccccccc-cccccCchhhccC-cccceeecccccc
Confidence            97 8999999999999999999999999999999999999999999999999 5667888999998 8999999999999


Q ss_pred             ccccCccccCCCCC-CEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChhhcc
Q 005711          193 CGEIPESLYYLKSL-KHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIAS  271 (681)
Q Consensus       193 ~~~~p~~l~~l~~L-~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~  271 (681)
                      .+.+|..+..+.++ +.+++++|++++..+.                     .+..+. ...++++.+...+.+|..+..
T Consensus       162 ~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~---------------------~~~~l~-~~~l~l~~~~~~~~~~~~~~~  219 (313)
T d1ogqa_         162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPP---------------------TFANLN-LAFVDLSRNMLEGDASVLFGS  219 (313)
T ss_dssp             EEECCGGGGCCCTTCCEEECCSSEEEEECCG---------------------GGGGCC-CSEEECCSSEEEECCGGGCCT
T ss_pred             ccccccccccccccccccccccccccccccc---------------------cccccc-ccccccccccccccccccccc
Confidence            99999988888776 7777877777655444                     333332 234666666666666666666


Q ss_pred             cCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCC
Q 005711          272 LQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQ  351 (681)
Q Consensus       272 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  351 (681)
                      +++++.+++++|.+.+.++ .+..+++|+.|++++|+++|.+|+.++.++   +|++|++++|+++|.+|. ++++++|+
T Consensus       220 ~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~---~L~~L~Ls~N~l~g~iP~-~~~L~~L~  294 (313)
T d1ogqa_         220 DKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLK---FLHSLNVSFNNLCGEIPQ-GGNLQRFD  294 (313)
T ss_dssp             TSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCT---TCCEEECCSSEEEEECCC-STTGGGSC
T ss_pred             ccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCC---CCCEEECcCCcccccCCC-cccCCCCC
Confidence            6666666666666655433 455666666677777777666676666655   677777777777766663 45666777


Q ss_pred             EEeccCCc
Q 005711          352 ALFLSNNL  359 (681)
Q Consensus       352 ~L~L~~n~  359 (681)
                      .+++++|+
T Consensus       295 ~l~l~~N~  302 (313)
T d1ogqa_         295 VSAYANNK  302 (313)
T ss_dssp             GGGTCSSS
T ss_pred             HHHhCCCc
Confidence            77777776

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=6.7e-32  Score=275.23  Aligned_cols=241  Identities=30%  Similarity=0.480  Sum_probs=166.9

Q ss_pred             ccccCCCCCCCEEEccC-CcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCC
Q 005711          365 PARIGNLTYLQVIDLSH-NMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGL  443 (681)
Q Consensus       365 ~~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l  443 (681)
                      |..++++++|++|++++ |.++|.+|..+..+++|++|++++|++.+..+..+..+..|+.++++.|.+.+.+|..+.++
T Consensus        69 p~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l  148 (313)
T d1ogqa_          69 PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL  148 (313)
T ss_dssp             CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred             ChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccC
Confidence            33444444444444443 33444444444444444444444444444444444555566666666666666666666666


Q ss_pred             CCCcEEECCCCcCCCcchhhhhcCCCC-CEEEccCCcCcccCCcccccCCccceeecccCccccCCCCCcccccCCcccc
Q 005711          444 KSLEIVDFSSNNLSGSLNDAITKWTNL-KYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLH  522 (681)
Q Consensus       444 ~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~  522 (681)
                      +.++++++++|.+.+.+|..+..+..+ +.++++.|++++..|..+..+..+                  .++++++...
T Consensus       149 ~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~------------------~l~l~~~~~~  210 (313)
T d1ogqa_         149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA------------------FVDLSRNMLE  210 (313)
T ss_dssp             TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS------------------EEECCSSEEE
T ss_pred             cccceeeccccccccccccccccccccccccccccccccccccccccccccc------------------cccccccccc
Confidence            666666666666666666666665554 666667777766666555443322                  2445555556


Q ss_pred             ccCCcccccccccceeecCCCcCcccCCCcCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccCcceeeCCCCCCC
Q 005711          523 GTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGY  602 (681)
Q Consensus       523 g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~  602 (681)
                      |.+|..+..+++++.+++++|.+++.+|.++.+++|+.|++++|+++|.+|+.+.++++|++|++++|+++|.+|....+
T Consensus       211 ~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L  290 (313)
T d1ogqa_         211 GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL  290 (313)
T ss_dssp             ECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTG
T ss_pred             ccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccC
Confidence            67888888899999999999999988888888999999999999999999999999999999999999999999987777


Q ss_pred             CCccc-cccCCCCCCCCCCCCCC
Q 005711          603 QKFPG-AFAGNPNLCLESSHGEC  624 (681)
Q Consensus       603 ~~~~~-~~~gn~~lc~~~~~~~c  624 (681)
                      ..+.. .+.||+.+||.|++ .|
T Consensus       291 ~~L~~l~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         291 QRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             GGSCGGGTCSSSEEESTTSS-CC
T ss_pred             CCCCHHHhCCCccccCCCCC-CC
Confidence            77776 89999999998865 55

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=3.4e-26  Score=239.73  Aligned_cols=146  Identities=27%  Similarity=0.399  Sum_probs=70.8

Q ss_pred             cCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccE
Q 005711          345 TELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKI  424 (681)
Q Consensus       345 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  424 (681)
                      ..+++|+.|++++|.+++..+  +..+++|++|++++|.+.+..  .+..++.++.+.+..|.+.+.  ..+..+++++.
T Consensus       238 ~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~  311 (384)
T d2omza2         238 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNLTY  311 (384)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSE
T ss_pred             hcccccchhccccCccCCCCc--ccccccCCEeeccCcccCCCC--ccccccccccccccccccccc--cccchhcccCe
Confidence            334444444444444433221  334444444444444443221  133344444444444444431  12344555566


Q ss_pred             EEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccC
Q 005711          425 LDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTN  502 (681)
Q Consensus       425 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n  502 (681)
                      |++++|++++..+  +..+++|++|++++|++++ ++ .+.++++|++|++++|++++..|  +.++++|+.|++++|
T Consensus       312 L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         312 LTLYFNNISDISP--VSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             EECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             EECCCCCCCCCcc--cccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            6666665554322  4555666666666666553 22 35556666666666666654332  555666666666655

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=4e-26  Score=239.13  Aligned_cols=353  Identities=22%  Similarity=0.251  Sum_probs=265.2

Q ss_pred             EcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCC
Q 005711           88 NLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPEL  167 (681)
Q Consensus        88 ~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~  167 (681)
                      .+....+.+.+.  ...+.+|++|+++++.++..  +.++.+++|++|++++|++++. | .|+++++|++|++++|++ 
T Consensus        28 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~~n~i-  100 (384)
T d2omza2          28 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQI-  100 (384)
T ss_dssp             HTTCSSTTSEEC--HHHHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCC-
T ss_pred             HhCCCCCCCccC--HHHhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCC-c-cccCCccccccccccccc-
Confidence            344555555443  34567899999999998853  4588899999999999999854 3 389999999999999954 


Q ss_pred             CccCCchhccccCCccEEEccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCc---ccEEECCCCCCccccchh
Q 005711          168 GGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQS---LLVLNLGSNRFSGTLPCF  244 (681)
Q Consensus       168 ~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~---L~~L~L~~n~l~~~~~~~  244 (681)
                      .+ ++ .++++ ++|+.|+++++.+++..+  ......+.......|.+..........   .........     ....
T Consensus       101 ~~-i~-~l~~l-~~L~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~  170 (384)
T d2omza2         101 AD-IT-PLANL-TNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVT-----DLKP  170 (384)
T ss_dssp             CC-CG-GGTTC-TTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCC-----CCGG
T ss_pred             cc-cc-ccccc-cccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccc-----hhhh
Confidence            33 22 36777 899999999988875432  445567778888777765444332222   111111111     1233


Q ss_pred             hccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCC
Q 005711          245 AASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKA  324 (681)
Q Consensus       245 ~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~  324 (681)
                      +...+.........|...  .......+++++.+++++|.+++..+  ....++|+.|++++|.++. ++ .+..+.   
T Consensus       171 ~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~~-~l~~l~---  241 (384)
T d2omza2         171 LANLTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IG-TLASLT---  241 (384)
T ss_dssp             GTTCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CG-GGGGCT---
T ss_pred             hccccccccccccccccc--cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-cc-hhhccc---
Confidence            444455556666555443  35567788999999999999886544  5667899999999999874 32 444444   


Q ss_pred             CccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecc
Q 005711          325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVN  404 (681)
Q Consensus       325 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~  404 (681)
                      +|+.+++++|.+++..+  +..+++|++|+++++++++..  .+..++.++.++++.|.+++.  ..+..+++++.++++
T Consensus       242 ~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls  315 (384)
T d2omza2         242 NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLY  315 (384)
T ss_dssp             TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECC
T ss_pred             ccchhccccCccCCCCc--ccccccCCEeeccCcccCCCC--ccccccccccccccccccccc--cccchhcccCeEECC
Confidence            89999999999986543  778899999999999998653  377889999999999998863  357888999999999


Q ss_pred             cccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCC
Q 005711          405 NNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARN  478 (681)
Q Consensus       405 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  478 (681)
                      +|++++..+  +..+++|+.|++++|++++ ++ .++++++|++|++++|++++..|  +.++++|++|+|++|
T Consensus       316 ~n~l~~l~~--l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         316 FNNISDISP--VSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             SSCCSCCGG--GGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCCCCcc--cccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            999987643  7789999999999999985 44 58899999999999999997654  889999999999987

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=9e-24  Score=213.66  Aligned_cols=270  Identities=23%  Similarity=0.243  Sum_probs=193.3

Q ss_pred             CCCCceeecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCcc
Q 005711           70 TNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDA  149 (681)
Q Consensus        70 c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~  149 (681)
                      |.|++|.|+.            .+++ .+|..+.  +.+++|+|++|+++...+..|.++++|++|++++|.+....|.+
T Consensus        10 c~~~~~~C~~------------~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~   74 (305)
T d1xkua_          10 CHLRVVQCSD------------LGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA   74 (305)
T ss_dssp             EETTEEECTT------------SCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT
T ss_pred             ecCCEEEecC------------CCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhh
Confidence            5788888863            2233 4566554  68999999999999777778999999999999999999888889


Q ss_pred             ccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCcccE
Q 005711          150 IMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLV  229 (681)
Q Consensus       150 ~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~  229 (681)
                      |.++++|++|++++|++  ..+|..+.   ..++.|++..|.+.+..+..+.....++.++...|.....          
T Consensus        75 f~~l~~L~~L~l~~n~l--~~l~~~~~---~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~----------  139 (305)
T d1xkua_          75 FAPLVKLERLYLSKNQL--KELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS----------  139 (305)
T ss_dssp             TTTCTTCCEEECCSSCC--SBCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG----------
T ss_pred             hhCCCccCEecccCCcc--CcCccchh---hhhhhhhccccchhhhhhhhhhcccccccccccccccccc----------
Confidence            99999999999999954  24554433   5788899998888866555667777777777777654321          


Q ss_pred             EECCCCCCccccchhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCc
Q 005711          230 LNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDL  309 (681)
Q Consensus       230 L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  309 (681)
                               ...+..+..+++|+.+++++|.+.. +|..  .+++|++|++++|...+..+..+..++.++.|++++|.+
T Consensus       140 ---------~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l  207 (305)
T d1xkua_         140 ---------GIENGAFQGMKKLSYIRIADTNITT-IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI  207 (305)
T ss_dssp             ---------GBCTTGGGGCTTCCEEECCSSCCCS-CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCC
T ss_pred             ---------CCCccccccccccCccccccCCccc-cCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccc
Confidence                     1334456666777777777777653 3332  246777777777777777777777777777777777777


Q ss_pred             cCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccc------cCCCCCCCEEEccCCc
Q 005711          310 SGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPAR------IGNLTYLQVIDLSHNM  383 (681)
Q Consensus       310 ~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~------l~~l~~L~~L~Ls~n~  383 (681)
                      ++..+..+..+.   +|++|++++|+++ .+|.++..+++|++|++++|+++......      .....+|+.|++++|.
T Consensus       208 ~~~~~~~~~~l~---~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         208 SAVDNGSLANTP---HLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             CEECTTTGGGST---TCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             cccccccccccc---cceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCc
Confidence            766665555554   6777777777776 45667777777777777777776433222      2345667777777776


Q ss_pred             Cc
Q 005711          384 LS  385 (681)
Q Consensus       384 l~  385 (681)
                      +.
T Consensus       284 ~~  285 (305)
T d1xkua_         284 VQ  285 (305)
T ss_dssp             SC
T ss_pred             Cc
Confidence            54

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=3.8e-23  Score=208.99  Aligned_cols=243  Identities=22%  Similarity=0.285  Sum_probs=131.6

Q ss_pred             CCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEE
Q 005711          107 FLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLD  186 (681)
Q Consensus       107 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~  186 (681)
                      ..+.+|-++++++ .+|..+.  +.+++|+|++|+++...+.+|.++++|++|++++|                      
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n----------------------   65 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN----------------------   65 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS----------------------
T ss_pred             cCCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccc----------------------
Confidence            4566777777776 3455443  56777777777777444446666666666666655                      


Q ss_pred             ccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCccc--cC
Q 005711          187 FSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVV--GG  264 (681)
Q Consensus       187 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~--~~  264 (681)
                          .+....|..|.++++|++|++++|+++.........++.|++.+|.+.+..+..+.....++.++...|...  ..
T Consensus        66 ----~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~  141 (305)
T d1xkua_          66 ----KISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI  141 (305)
T ss_dssp             ----CCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGB
T ss_pred             ----cccccchhhhhCCCccCEecccCCccCcCccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCC
Confidence                344334455556666666666666665544444445666666666665555555666666777777666432  23


Q ss_pred             CChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccc
Q 005711          265 IPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI  344 (681)
Q Consensus       265 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l  344 (681)
                      .+..+..+++|+.+++++|.+. .++..  .+++|+.|++++|..++..+..+..+.   .+++|++++|.+++..+.++
T Consensus       142 ~~~~~~~l~~L~~l~l~~n~l~-~l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~---~l~~L~~s~n~l~~~~~~~~  215 (305)
T d1xkua_         142 ENGAFQGMKKLSYIRIADTNIT-TIPQG--LPPSLTELHLDGNKITKVDAASLKGLN---NLAKLGLSFNSISAVDNGSL  215 (305)
T ss_dssp             CTTGGGGCTTCCEEECCSSCCC-SCCSS--CCTTCSEEECTTSCCCEECTGGGTTCT---TCCEEECCSSCCCEECTTTG
T ss_pred             CccccccccccCccccccCCcc-ccCcc--cCCccCEEECCCCcCCCCChhHhhccc---cccccccccccccccccccc
Confidence            3445556666666666666554 22222  134455555555554444444433333   44445555555444444444


Q ss_pred             cCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCc
Q 005711          345 TELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLS  385 (681)
Q Consensus       345 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  385 (681)
                      ..+++|++|+|++|.++ .+|..+.++++|++|++++|+++
T Consensus       216 ~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         216 ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             GGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             cccccceeeeccccccc-ccccccccccCCCEEECCCCccC
Confidence            44444555555444444 23444444444444444444444

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.8e-24  Score=213.20  Aligned_cols=231  Identities=20%  Similarity=0.188  Sum_probs=118.7

Q ss_pred             CCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecc-cccccccCccccCCCCCccEEEc
Q 005711          349 SLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVN-NNNLSGEIQPELDALDSLKILDI  427 (681)
Q Consensus       349 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~L  427 (681)
                      ++++|+|++|++++..+..|.++++|++|++++|.+.+..+..+.....+..+... .+.+....+..+..+++|+.|++
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            34444444444443333334444444444444444444444444444444444332 22333333444555555555555


Q ss_pred             ccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccccC
Q 005711          428 SNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGF  507 (681)
Q Consensus       428 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~  507 (681)
                      ++|.+....+..+..+++|+.+++++|++++..+..+..+++|+.|++++|++++..+..+..+++|+.+++++|++++ 
T Consensus       113 ~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~-  191 (284)
T d1ozna_         113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH-  191 (284)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-
T ss_pred             CCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccc-
Confidence            5555554444455555555566666655554444555555556666666666555445555555555555555444432 


Q ss_pred             CCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCCCCCeEe
Q 005711          508 IPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLN  586 (681)
Q Consensus       508 ~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  586 (681)
                                      ..|..|.++++|++|++++|++.+..|. ++.+++|+.|++++|.+.+..+.. .-...++.+.
T Consensus       192 ----------------i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~-~l~~~l~~~~  254 (284)
T d1ozna_         192 ----------------VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFR  254 (284)
T ss_dssp             ----------------ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCC
T ss_pred             ----------------cChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccch-HHHHHHHhCc
Confidence                            3455566666666666666666655555 666666666666666666543311 1112234445


Q ss_pred             cccCcceeeCC
Q 005711          587 LSYNSFSGFVP  597 (681)
Q Consensus       587 ls~N~l~~~~p  597 (681)
                      ...+++.|..|
T Consensus       255 ~~~~~~~C~~p  265 (284)
T d1ozna_         255 GSSSEVPCSLP  265 (284)
T ss_dssp             SEECCCBEEES
T ss_pred             CCCCceEeCCc
Confidence            55566666554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=7.4e-23  Score=204.44  Aligned_cols=207  Identities=22%  Similarity=0.198  Sum_probs=140.1

Q ss_pred             cccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEcc-CCCCcCCCcccccCCCCCCE
Q 005711          274 ALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLS-HNRFSGEIPLKITELKSLQA  352 (681)
Q Consensus       274 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls-~n~l~~~~p~~l~~l~~L~~  352 (681)
                      ++++|+|++|+++...+..+..+++|++|++++|.+.+..+..+....   .++.++.. .+.++...+..+.++++|++
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~---~~~~l~~~~~~~~~~l~~~~~~~l~~L~~  109 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA---LLEQLDLSDNAQLRSVDPATFHGLGRLHT  109 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT---TCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccc---cccccccccccccccccchhhcccccCCE
Confidence            455555555555544444455555566666665555544443333333   45555443 44455445566677777777


Q ss_pred             EeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcc
Q 005711          353 LFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQI  432 (681)
Q Consensus       353 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  432 (681)
                      |++++|.+....+..+...++|+.+++++|.+++..+..+..+++|+.|++++|.+.+..+..|.++++|+.+++++|++
T Consensus       110 L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l  189 (284)
T d1ozna_         110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV  189 (284)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             EecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccc
Confidence            77777777655566666677777777777777765556666667777777777777766666777788888888888888


Q ss_pred             eeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCccc
Q 005711          433 SGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGN  483 (681)
Q Consensus       433 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  483 (681)
                      ++..|..|.++++|++|++++|++.+..+..+..+++|++|++++|.+.+.
T Consensus       190 ~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~  240 (284)
T d1ozna_         190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (284)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             cccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCC
Confidence            877788888888888888888888877777788888888888888877653

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.2e-21  Score=193.31  Aligned_cols=180  Identities=23%  Similarity=0.184  Sum_probs=127.6

Q ss_pred             CcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEcc
Q 005711          397 QLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIA  476 (681)
Q Consensus       397 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  476 (681)
                      ++++|++++|.+++..+..|..+++|+.|+|++|+++. +| .++.+++|++|++++|++++ .+..+..+++|++|+++
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~  108 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVS  108 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECC
T ss_pred             CCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccccccccccccc-ccccccccccccccccc
Confidence            34444444444444434455566666666666666653 33 24566777777777777663 34456667777777777


Q ss_pred             CCcCcccCCcccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCC
Q 005711          477 RNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRL  555 (681)
Q Consensus       477 ~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l  555 (681)
                      +|.+.+..+..+..+.+++.|++++|.+.+                 ..+..+..+++++.|++++|++++..+. +..+
T Consensus       109 ~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~-----------------l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l  171 (266)
T d1p9ag_         109 FNRLTSLPLGALRGLGELQELYLKGNELKT-----------------LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL  171 (266)
T ss_dssp             SSCCCCCCSSTTTTCTTCCEEECTTSCCCC-----------------CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTC
T ss_pred             ccccceeeccccccccccccccccccccce-----------------eccccccccccchhcccccccccccCccccccc
Confidence            777665555555566666666666555542                 3345566788999999999999987777 8889


Q ss_pred             CCCCEEECCCCcCcccCCccccCCCCCCeEecccCcceeeCC
Q 005711          556 RSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVP  597 (681)
Q Consensus       556 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p  597 (681)
                      ++|+.|||++|+|+ .+|..+..+++|+.|++++|++.|.+.
T Consensus       172 ~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~  212 (266)
T d1p9ag_         172 ENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (266)
T ss_dssp             TTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             cccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCcc
Confidence            99999999999999 889888899999999999999998764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.5e-20  Score=185.45  Aligned_cols=199  Identities=24%  Similarity=0.269  Sum_probs=141.3

Q ss_pred             CCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCE
Q 005711          297 EKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQV  376 (681)
Q Consensus       297 ~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  376 (681)
                      ..+.+++.+++.++ .+|+.+..     ++++|+|++|++++..+..|..+++|++|+|++|+++. ++ .++.+++|++
T Consensus        10 ~~~~~v~C~~~~L~-~iP~~lp~-----~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~   81 (266)
T d1p9ag_          10 ASHLEVNCDKRNLT-ALPPDLPK-----DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGT   81 (266)
T ss_dssp             TTCCEEECTTSCCS-SCCSCCCT-----TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCE
T ss_pred             CCCeEEEccCCCCC-eeCcCcCc-----CCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccc
Confidence            34445566666665 35544431     56777777777765545566777777777777777663 33 3456777777


Q ss_pred             EEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcC
Q 005711          377 IDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNL  456 (681)
Q Consensus       377 L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l  456 (681)
                      |++++|++++ .+..+..+++|+.|++++|.+.+..+..+..+.+++.|++++|.+....+..+..+++|+.+++++|++
T Consensus        82 L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l  160 (266)
T d1p9ag_          82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL  160 (266)
T ss_dssp             EECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             cccccccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccc
Confidence            7777777763 455666777777777777777766666677778888888888888766666777788888888888888


Q ss_pred             CCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccc
Q 005711          457 SGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFM  505 (681)
Q Consensus       457 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~  505 (681)
                      ++..+..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|.+.
T Consensus       161 ~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            8777777778888888888888887 67777778888888888887664

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.79  E-value=4e-17  Score=167.49  Aligned_cols=239  Identities=27%  Similarity=0.288  Sum_probs=119.9

Q ss_pred             CccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecc
Q 005711          325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVN  404 (681)
Q Consensus       325 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~  404 (681)
                      .|++|++++|.++ .+|. ++.+++|+.|+++++.+.... .   ....+..+.+..+...  .+..+..++.++.+.+.
T Consensus        99 ~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~~-~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~  170 (353)
T d1jl5a_          99 LLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKKLP-D---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYAD  170 (353)
T ss_dssp             TCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECC
T ss_pred             ccccccccccccc-cccc-hhhhccceeeccccccccccc-c---ccccccchhhcccccc--ccccccccccceecccc
Confidence            3555555555544 2332 344455555555555443221 1   1233444444433322  12223344444555555


Q ss_pred             cccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccC
Q 005711          405 NNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNL  484 (681)
Q Consensus       405 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  484 (681)
                      .|.......    .....+.+...++.+. .++ .+..++.|+.+++++|.... ++.   ...++..+.+.++.+.. .
T Consensus       171 ~n~~~~~~~----~~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~~-~~~---~~~~l~~~~~~~~~~~~-~  239 (353)
T d1jl5a_         171 NNSLKKLPD----LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-L  239 (353)
T ss_dssp             SSCCSSCCC----CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-C
T ss_pred             ccccccccc----cccccccccccccccc-ccc-cccccccccccccccccccc-ccc---ccccccccccccccccc-c
Confidence            444432111    1122334444443333 222 23455566666666655442 221   23345555565555542 1


Q ss_pred             CcccccCCccceeecccCcccc---CCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCCcCCCCCCCEE
Q 005711          485 PNWLFSFQAIQMMDFSTNKFMG---FIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRAL  561 (681)
Q Consensus       485 p~~~~~l~~L~~L~ls~n~~~~---~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L  561 (681)
                      +.   ....+...++..+.+.+   ........++..+.+.+ ++   ..+++|++|+|++|+++ .+|.  .+++|+.|
T Consensus       240 ~~---~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~-~~---~~~~~L~~L~Ls~N~l~-~lp~--~~~~L~~L  309 (353)
T d1jl5a_         240 PE---LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRS-LC---DLPPSLEELNVSNNKLI-ELPA--LPPRLERL  309 (353)
T ss_dssp             CC---CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSE-EC---CCCTTCCEEECCSSCCS-CCCC--CCTTCCEE
T ss_pred             cc---ccccccccccccccccccccccchhcccccccCcccc-cc---ccCCCCCEEECCCCccC-cccc--ccCCCCEE
Confidence            11   12334444444443332   12223345555555552 22   23578899999999888 5664  35788899


Q ss_pred             ECCCCcCcccCCccccCCCCCCeEecccCcceeeCC
Q 005711          562 DLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVP  597 (681)
Q Consensus       562 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p  597 (681)
                      ++++|+++ .+|+.   +++|++|++++|+++ .+|
T Consensus       310 ~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp  340 (353)
T d1jl5a_         310 IASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFP  340 (353)
T ss_dssp             ECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCC
T ss_pred             ECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCC
Confidence            99999988 56754   457889999999987 345

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.78  E-value=5.2e-17  Score=166.62  Aligned_cols=95  Identities=23%  Similarity=0.312  Sum_probs=52.8

Q ss_pred             CCccEEEccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCC
Q 005711          180 MNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNN  259 (681)
Q Consensus       180 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n  259 (681)
                      .++++||++++.++ .+|+.   .++|++|++++|+++ .+|..+.+|+.|++++|+++. ++..   .+.|++|++++|
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~~~~L~~L~l~~n~l~~-l~~l---p~~L~~L~L~~n  108 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNN  108 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCCCTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSS
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccchhhhhhhhhhhcccch-hhhh---cccccccccccc
Confidence            36778888888877 56653   457778888887777 335555566666666666542 2210   123555555555


Q ss_pred             ccccCCChhhcccCcccEEecCCCcc
Q 005711          260 SVVGGIPTCIASLQALTHLNLSHNHL  285 (681)
Q Consensus       260 ~l~~~~p~~l~~l~~L~~L~L~~n~l  285 (681)
                      .+. .+|. ++.+++|++|+++++.+
T Consensus       109 ~l~-~lp~-~~~l~~L~~L~l~~~~~  132 (353)
T d1jl5a_         109 QLE-KLPE-LQNSSFLKIIDVDNNSL  132 (353)
T ss_dssp             CCS-SCCC-CTTCTTCCEEECCSSCC
T ss_pred             ccc-cccc-hhhhccceeeccccccc
Confidence            544 2232 33444444444444443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1e-20  Score=202.24  Aligned_cols=115  Identities=22%  Similarity=0.224  Sum_probs=55.8

Q ss_pred             cEEEEEcCCCCCccc-ccccccCCCCCCEEECCCCcCCcc----ccccccCCCCCCEEEccCCCCCCcCCccccCCCCCC
Q 005711           83 HVVSINLTDTSLSGQ-VHPRLCKLSFLEFLVLSSNAFTGR----ISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLR  157 (681)
Q Consensus        83 ~v~~L~L~~~~l~g~-~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  157 (681)
                      .+++||++++++++. +..-+..++++++|+|++|.++..    ++..+..+++|++|||++|.++......+       
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l-------   75 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCV-------   75 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHH-------
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHH-------
Confidence            355566666555542 122234445555555555555421    33344455555555555555431100011       


Q ss_pred             EeeCCCCCCCCccCCchhccccCCccEEEccCCcCccc----cCccccCCCCCCEEEccCccCcc
Q 005711          158 ELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGE----IPESLYYLKSLKHLDLEKNNLTG  218 (681)
Q Consensus       158 ~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~  218 (681)
                                    ...+.....+|++|++++|.+++.    ++..+..+++|++|++++|.++.
T Consensus        76 --------------~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          76 --------------LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             --------------HHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             --------------HHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence                          111111113566666666666532    34455666777777777776653

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.1e-19  Score=194.11  Aligned_cols=83  Identities=22%  Similarity=0.245  Sum_probs=63.9

Q ss_pred             cEEEEEcCCCCCcc----cccccccCCCCCCEEECCCCcCCcc----cccccc-CCCCCCEEEccCCCCCCc----CCcc
Q 005711           83 HVVSINLTDTSLSG----QVHPRLCKLSFLEFLVLSSNAFTGR----ISTCFG-GLSGLKTLDLSYNKFVGV----VPDA  149 (681)
Q Consensus        83 ~v~~L~L~~~~l~g----~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~-~l~~L~~L~Ls~n~l~~~----~p~~  149 (681)
                      +++.|+|++++++.    .+...+..+++|++|||++|.++..    +...+. ...+|++|+|++|+++..    ++..
T Consensus        28 ~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~  107 (460)
T d1z7xw1          28 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST  107 (460)
T ss_dssp             TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             CCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccch
Confidence            46689999999873    3455678999999999999998643    333333 345899999999998754    3556


Q ss_pred             ccCCCCCCEeeCCCCC
Q 005711          150 IMKLRNLRELILKGNP  165 (681)
Q Consensus       150 ~~~l~~L~~L~L~~n~  165 (681)
                      +..+++|++|++++|+
T Consensus       108 l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1         108 LRTLPTLQELHLSDNL  123 (460)
T ss_dssp             TTSCTTCCEEECCSSB
T ss_pred             hhcccccccccccccc
Confidence            7788999999999884

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=3.7e-17  Score=156.69  Aligned_cols=58  Identities=21%  Similarity=0.287  Sum_probs=38.0

Q ss_pred             cccccccceeecCCCcCcccCCCcCCCCCCCEEECCCCcCcccCCccccCCCCCCeEeccc
Q 005711          529 LFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSY  589 (681)
Q Consensus       529 l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  589 (681)
                      +.++++|++|+|++|++++ ++.+.++++|+.|++++|++++. | .++++++|+.|++++
T Consensus       169 l~~l~~L~~L~Ls~n~l~~-l~~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         169 LANLSKLTTLKADDNKISD-ISPLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             GTTCTTCCEEECCSSCCCC-CGGGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEEE
T ss_pred             hcccccceecccCCCccCC-ChhhcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEeeC
Confidence            4556667777777777663 45566677777777777777743 3 266777777777653

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=5.8e-17  Score=155.32  Aligned_cols=206  Identities=21%  Similarity=0.314  Sum_probs=164.0

Q ss_pred             ccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeeccc
Q 005711          326 LVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNN  405 (681)
Q Consensus       326 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~  405 (681)
                      +..++++.+++++..  .+..+.+|++|++.+|.++. + +.+.++++|++|++++|.+++..|  +..+++++.+++++
T Consensus        21 ~~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~   94 (227)
T d1h6ua2          21 AIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSG   94 (227)
T ss_dssp             HHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCS
T ss_pred             HHHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--cccccccccccccc
Confidence            445678888888654  35667899999999999885 4 458899999999999999986544  78889999999999


Q ss_pred             ccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCC
Q 005711          406 NNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLP  485 (681)
Q Consensus       406 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p  485 (681)
                      |.++. + ..+..+++|+.++++++...+.  ..+...+.++.+.++++.+....  .+..+++|++|++++|.+.+.  
T Consensus        95 n~~~~-i-~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~--  166 (227)
T d1h6ua2          95 NPLKN-V-SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDL--  166 (227)
T ss_dssp             CCCSC-C-GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCC--
T ss_pred             ccccc-c-cccccccccccccccccccccc--chhccccchhhhhchhhhhchhh--hhccccccccccccccccccc--
Confidence            98874 3 2477889999999999887754  33567888999999999887543  367788999999999988643  


Q ss_pred             cccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCCcCCCCCCCEEECCC
Q 005711          486 NWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSH  565 (681)
Q Consensus       486 ~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L~Ls~  565 (681)
                      ..+.++++|+.|++++|+++                  .+| .+.++++|++|+|++|++++ ++.+.++++|+.|++++
T Consensus       167 ~~l~~l~~L~~L~Ls~n~l~------------------~l~-~l~~l~~L~~L~Ls~N~lt~-i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         167 TPLANLSKLTTLKADDNKIS------------------DIS-PLASLPNLIEVHLKNNQISD-VSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             GGGTTCTTCCEEECCSSCCC------------------CCG-GGGGCTTCCEEECTTSCCCB-CGGGTTCTTCCEEEEEE
T ss_pred             hhhcccccceecccCCCccC------------------CCh-hhcCCCCCCEEECcCCcCCC-CcccccCCCCCEEEeeC
Confidence            23677888888888777665                  233 37789999999999999984 66688999999999974

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.4e-16  Score=154.36  Aligned_cols=219  Identities=16%  Similarity=0.105  Sum_probs=114.4

Q ss_pred             cEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccC-cccccCCCcceeeccc
Q 005711          327 VLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIP-LNIVGCFQLLALIVNN  405 (681)
Q Consensus       327 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~~~~L~~L~l~~  405 (681)
                      +.++.++..++ .+|..+.  +++++|++++|.++...+..|.++++|++|++++|.+...++ ..|.+++.++++.+..
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            55666666666 5565443  467777777777765555567777777777777777665443 2344455555554432


Q ss_pred             -ccccccCccccCCCCCccEEEcccCcceecccc-ccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCccc
Q 005711          406 -NNLSGEIQPELDALDSLKILDISNNQISGEIPL-TLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGN  483 (681)
Q Consensus       406 -n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  483 (681)
                       |.+....+..+.++++|+.+++++|.+....+. .+..+..+..+...++.+....+..+..++               
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~---------------  152 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS---------------  152 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSB---------------
T ss_pred             cccccccccccccccccccccccchhhhccccccccccccccccccccccccccccccccccccc---------------
Confidence             344444444445555555555555554422111 111222333333333333222122222111               


Q ss_pred             CCcccccCCccceeecccCccccCCCCCcccccCCccccccCCccccccccccee-ecCCCcCcccCCC-cCCCCCCCEE
Q 005711          484 LPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYL-NLSFNFLDGQVPG-LYRLRSLRAL  561 (681)
Q Consensus       484 ~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L-~Ls~N~l~~~ip~-~~~l~~L~~L  561 (681)
                              ..++.                 +++++|+++ .++.......+++++ ++++|+++...+. +.++++|+.|
T Consensus       153 --------~~l~~-----------------L~l~~n~l~-~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L  206 (242)
T d1xwdc1         153 --------FESVI-----------------LWLNKNGIQ-EIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL  206 (242)
T ss_dssp             --------SSCEE-----------------EECCSSCCC-EECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEE
T ss_pred             --------cccee-----------------eeccccccc-ccccccccchhhhccccccccccccccHHHhcCCCCCCEE
Confidence                    12222                 333333333 344444444454444 4566777743333 6778888888


Q ss_pred             ECCCCcCcccCCccccCCCCCCeEeccc
Q 005711          562 DLSHNSLTGQIPGNISSLQELTLLNLSY  589 (681)
Q Consensus       562 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  589 (681)
                      ++++|+++...+..|.+++.|+++++.+
T Consensus       207 ~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         207 DISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             ECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             ECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            8888888855555667777666666543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=4.3e-16  Score=147.00  Aligned_cols=145  Identities=25%  Similarity=0.329  Sum_probs=91.5

Q ss_pred             CCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccce
Q 005711          417 DALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQM  496 (681)
Q Consensus       417 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  496 (681)
                      ..+++|+.|++++|++++..  .++.+++|++|++++|++++ ++ .+..+++|+.|++++|.+..  ...+..++.++.
T Consensus        65 ~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~~--~~~l~~l~~l~~  138 (210)
T d1h6ta2          65 QYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD--INGLVHLPQLES  138 (210)
T ss_dssp             GGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC--CGGGGGCTTCCE
T ss_pred             hhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-cccccccccccccccccccc--cccccccccccc
Confidence            44555666666666655432  24556666666666666653 23 35556666666666666542  223555556666


Q ss_pred             eecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCCcCCCCCCCEEECCCCcCcccCCccc
Q 005711          497 MDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNI  576 (681)
Q Consensus       497 L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L~Ls~N~l~~~~p~~l  576 (681)
                      +++++|.+++                   +..+..+++|+.+++++|++++ ++.+.++++|+.|++++|+++. +| .+
T Consensus       139 l~~~~n~l~~-------------------~~~~~~l~~L~~l~l~~n~l~~-i~~l~~l~~L~~L~Ls~N~i~~-l~-~l  196 (210)
T d1h6ta2         139 LYLGNNKITD-------------------ITVLSRLTKLDTLSLEDNQISD-IVPLAGLTKLQNLYLSKNHISD-LR-AL  196 (210)
T ss_dssp             EECCSSCCCC-------------------CGGGGGCTTCSEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCB-CG-GG
T ss_pred             cccccccccc-------------------cccccccccccccccccccccc-cccccCCCCCCEEECCCCCCCC-Ch-hh
Confidence            6665555431                   2335567788888888888874 5557788888888888888874 55 47


Q ss_pred             cCCCCCCeEeccc
Q 005711          577 SSLQELTLLNLSY  589 (681)
Q Consensus       577 ~~l~~L~~L~ls~  589 (681)
                      +.+++|++|++++
T Consensus       197 ~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         197 AGLKNLDVLELFS  209 (210)
T ss_dssp             TTCTTCSEEEEEE
T ss_pred             cCCCCCCEEEccC
Confidence            8888888888764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=3.5e-16  Score=151.41  Aligned_cols=211  Identities=17%  Similarity=0.125  Sum_probs=127.3

Q ss_pred             cCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcC-CccccCCCCCCEeeCCCCCCC
Q 005711           89 LTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVV-PDAIMKLRNLRELILKGNPEL  167 (681)
Q Consensus        89 L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~~~  167 (681)
                      .++.++. .+|+.+.  +++++||+++|.++...+..|.++++|++|++++|.+...+ +.+|.++++++++.+..++..
T Consensus        15 c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l   91 (242)
T d1xwdc1          15 CQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL   91 (242)
T ss_dssp             EESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTC
T ss_pred             EeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccc
Confidence            3344444 4565553  57899999999998766778999999999999999887654 457888999999988765455


Q ss_pred             CccCCchhccccCCccEEEccCCcCccccCc-cccCCCCCCEEEccCccCcccccCcCC----cccEEECCCCCCccccc
Q 005711          168 GGVFPGWVGNFSMNLEKLDFSFNSFCGEIPE-SLYYLKSLKHLDLEKNNLTGNVHDFYQ----SLLVLNLGSNRFSGTLP  242 (681)
Q Consensus       168 ~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~~~~~~----~L~~L~L~~n~l~~~~~  242 (681)
                      ....+..+..+ ++|+++++++|.+....+. .+..+..+..+...++.+....+..+.    .++.|++++|+++. ++
T Consensus        92 ~~~~~~~~~~l-~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~-i~  169 (242)
T d1xwdc1          92 LYINPEAFQNL-PNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IH  169 (242)
T ss_dssp             CEECTTSEECC-TTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-EC
T ss_pred             ccccccccccc-ccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc-cc
Confidence            56666667777 7888888888887633221 233445555555566566554444332    25556666666653 23


Q ss_pred             hhhccCCCCCEE-EccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEec
Q 005711          243 CFAASAMSLTVL-KLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDL  304 (681)
Q Consensus       243 ~~~~~~~~L~~L-~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  304 (681)
                      ......++++++ .+++|+++...+..|.++++|++|++++|+++...+..+.++++|+.+++
T Consensus       170 ~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         170 NCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             TTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             cccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence            333333443333 34444454332333455555555555555555332333444444444333

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.65  E-value=2.2e-16  Score=146.77  Aligned_cols=171  Identities=23%  Similarity=0.292  Sum_probs=105.1

Q ss_pred             cEEEccCCCCcCCCcccccCCCCCCEEeccCCcccccc-ccccCCCCCCCEEEccCCcCccccCcccccCCCcceeeccc
Q 005711          327 VLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEI-PARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNN  405 (681)
Q Consensus       327 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~  405 (681)
                      +.++.++++++ .+|..+.  +++++|+|++|++++.+ +..|.++++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            45666666666 4554442  45666666666665433 44456666666677666666666666666666666666666


Q ss_pred             ccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchh-hhhcCCCCCEEEccCCcCcccC
Q 005711          406 NNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLND-AITKWTNLKYFSIARNKLSGNL  484 (681)
Q Consensus       406 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~  484 (681)
                      |++....+..|.++++|+.|+|++|++++..+..|.++++|++++|++|.+...... ++.  ..++.+.+..+.+....
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~--~~l~~~~l~~~~~~c~~  165 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCGA  165 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCS
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHh--hhhhhhcccCCCeEeCC
Confidence            666666666677777788888888888777777777788888888888877643221 111  12344455556665555


Q ss_pred             CcccccCCccceeecccCccc
Q 005711          485 PNWLFSFQAIQMMDFSTNKFM  505 (681)
Q Consensus       485 p~~~~~l~~L~~L~ls~n~~~  505 (681)
                      |..   +..++.++++.|++.
T Consensus       166 p~~---l~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         166 PSK---VRDVQIKDLPHSEFK  183 (192)
T ss_dssp             STT---TTTSBGGGSCTTTCC
T ss_pred             Chh---hcCCEeeecCHhhCc
Confidence            543   344455566665554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=6.9e-16  Score=145.51  Aligned_cols=181  Identities=22%  Similarity=0.327  Sum_probs=114.6

Q ss_pred             EEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccc
Q 005711          329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNL  408 (681)
Q Consensus       329 L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l  408 (681)
                      ..+..+.+++.++.  ..+.+|++|++++|.++...  .+..+++|++|++++|.+++..+                   
T Consensus        29 ~~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~~-------------------   85 (210)
T d1h6ta2          29 DNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP-------------------   85 (210)
T ss_dssp             HHTTCSCTTSEECH--HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG-------------------
T ss_pred             HHhCcCccCCccCH--HHhcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCccc-------------------
Confidence            35566666654442  23567777777777776432  36667777777777777664221                   


Q ss_pred             cccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCccc
Q 005711          409 SGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWL  488 (681)
Q Consensus       409 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~  488 (681)
                             ++.+++|+.|++++|++++ +| .+.++++|+.|++++|.+.. + ..+..+++++.+++++|.+++  +..+
T Consensus        86 -------~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~~--~~~~  152 (210)
T d1h6ta2          86 -------LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD--ITVL  152 (210)
T ss_dssp             -------GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC--CGGG
T ss_pred             -------cccCccccccccccccccc-cc-cccccccccccccccccccc-c-ccccccccccccccccccccc--cccc
Confidence                   3445566666666666653 33 35666667777777666652 2 245666777777777776653  3345


Q ss_pred             ccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCCcCCCCCCCEEECCC
Q 005711          489 FSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSH  565 (681)
Q Consensus       489 ~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L~Ls~  565 (681)
                      ..+++|+.+++++|+++                  .++ .+.++++|++|+|++|+++ .+|.+.++++|+.|+|++
T Consensus       153 ~~l~~L~~l~l~~n~l~------------------~i~-~l~~l~~L~~L~Ls~N~i~-~l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         153 SRLTKLDTLSLEDNQIS------------------DIV-PLAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELFS  209 (210)
T ss_dssp             GGCTTCSEEECCSSCCC------------------CCG-GGTTCTTCCEEECCSSCCC-BCGGGTTCTTCSEEEEEE
T ss_pred             ccccccccccccccccc------------------ccc-cccCCCCCCEEECCCCCCC-CChhhcCCCCCCEEEccC
Confidence            55666666666666554                  222 2667788888888888887 466788888888888864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=1.2e-15  Score=142.57  Aligned_cols=141  Identities=26%  Similarity=0.393  Sum_probs=79.8

Q ss_pred             CCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccce
Q 005711          417 DALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQM  496 (681)
Q Consensus       417 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  496 (681)
                      ..+++|++|++++|++++..|  ++++++|++|++++|.+... + .+.++++|+.|++++|.....  ..+..+++|+.
T Consensus        59 ~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~  132 (199)
T d2omxa2          59 EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI-T-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNR  132 (199)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSE
T ss_pred             ccCCCcCcCccccccccCccc--ccCCcccccccccccccccc-c-ccccccccccccccccccccc--cccchhhhhHH
Confidence            344555555555555554322  55555566666655555422 2 245555666666655555421  22444555555


Q ss_pred             eecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCCcCCCCCCCEEECCCCcCcccCCccc
Q 005711          497 MDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNI  576 (681)
Q Consensus       497 L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L~Ls~N~l~~~~p~~l  576 (681)
                      |++++|++.                  .+ +.+..+++|++|++++|++++ ++.++++++|+.|++++|++++ +| .+
T Consensus       133 L~l~~n~l~------------------~~-~~l~~~~~L~~L~l~~n~l~~-l~~l~~l~~L~~L~ls~N~i~~-i~-~l  190 (199)
T d2omxa2         133 LELSSNTIS------------------DI-SALSGLTSLQQLNFSSNQVTD-LKPLANLTTLERLDISSNKVSD-IS-VL  190 (199)
T ss_dssp             EECCSSCCC------------------CC-GGGTTCTTCSEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCC-CG-GG
T ss_pred             hhhhhhhhc------------------cc-ccccccccccccccccccccC-CccccCCCCCCEEECCCCCCCC-Cc-cc
Confidence            555555442                  22 235566777777777777763 4456777777777777777764 33 36


Q ss_pred             cCCCCCCeE
Q 005711          577 SSLQELTLL  585 (681)
Q Consensus       577 ~~l~~L~~L  585 (681)
                      +.+++|++|
T Consensus       191 ~~L~~L~~L  199 (199)
T d2omxa2         191 AKLTNLESL  199 (199)
T ss_dssp             GGCTTCSEE
T ss_pred             cCCCCCCcC
Confidence            667777654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.64  E-value=4.2e-16  Score=144.86  Aligned_cols=128  Identities=19%  Similarity=0.212  Sum_probs=71.6

Q ss_pred             CEEeccCCccccccccccCCCCCCCEEEccCCcCcccc-CcccccCCCcceeecccccccccCccccCCCCCccEEEccc
Q 005711          351 QALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSI-PLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISN  429 (681)
Q Consensus       351 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~  429 (681)
                      +.++.++++++ .+|..+.  +++++|+|++|++++.+ +..|.++++|+.|++++|.+.+..+..+..+++|+.|++++
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            45666666665 4454442  45666666666665433 33445555555555555555555555555555555555555


Q ss_pred             CcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCc
Q 005711          430 NQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLS  481 (681)
Q Consensus       430 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  481 (681)
                      |+++...+..|.++++|++|+|++|++++..+.+|..+++|++|+|++|.+.
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            5555544555555555555555555555544555555555555555555544

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=3.1e-15  Score=139.75  Aligned_cols=178  Identities=26%  Similarity=0.365  Sum_probs=104.2

Q ss_pred             EEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeeccccc
Q 005711          328 LLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNN  407 (681)
Q Consensus       328 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~  407 (681)
                      ...++.+.+++.++  ...++++++|++++|.++. + +.+..+++|++|++++|++++..|  +.              
T Consensus        22 ~~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~--------------   81 (199)
T d2omxa2          22 KTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LK--------------   81 (199)
T ss_dssp             HHHTTCSSTTSEEC--HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GT--------------
T ss_pred             HHHhCCCCCCCccC--HHHhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc--cc--------------
Confidence            34566777765443  2346678888888887763 2 346677777777777777764322  34              


Q ss_pred             ccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcc
Q 005711          408 LSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNW  487 (681)
Q Consensus       408 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~  487 (681)
                                ++++|+.|++++|.+.. ++ .+.++++|+.+++++|.+...  ..+..+++|+.|++++|++.. + +.
T Consensus        82 ----------~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~  145 (199)
T d2omxa2          82 ----------NLTKLVDILMNNNQIAD-IT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SA  145 (199)
T ss_dssp             ----------TCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GG
T ss_pred             ----------CCccccccccccccccc-cc-ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhcc-c-cc
Confidence                      44555555555555442 22 245555555555555555432  224455566666666665542 2 23


Q ss_pred             cccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCCcCCCCCCCEE
Q 005711          488 LFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRAL  561 (681)
Q Consensus       488 ~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L  561 (681)
                      +..+++|+.|++++|++++                  ++ .++++++|++|++++|+++ .++.+..+++|++|
T Consensus       146 l~~~~~L~~L~l~~n~l~~------------------l~-~l~~l~~L~~L~ls~N~i~-~i~~l~~L~~L~~L  199 (199)
T d2omxa2         146 LSGLTSLQQLNFSSNQVTD------------------LK-PLANLTTLERLDISSNKVS-DISVLAKLTNLESL  199 (199)
T ss_dssp             GTTCTTCSEEECCSSCCCC------------------CG-GGTTCTTCCEEECCSSCCC-CCGGGGGCTTCSEE
T ss_pred             ccccccccccccccccccC------------------Cc-cccCCCCCCEEECCCCCCC-CCccccCCCCCCcC
Confidence            4555555555555555432                  22 3566778888888888877 35667777777765

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=3.3e-15  Score=147.87  Aligned_cols=34  Identities=21%  Similarity=0.202  Sum_probs=18.0

Q ss_pred             CCccEEEccCCcCccccCccccCCCCCCEEEccC
Q 005711          180 MNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEK  213 (681)
Q Consensus       180 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  213 (681)
                      ++|++|++++|.+++..+..++.+++|++|++++
T Consensus        71 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~  104 (284)
T d2astb2          71 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG  104 (284)
T ss_dssp             CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred             CCcccccccccCCCcHHHHHHhcCCCCcCccccc
Confidence            4455555555555444445555555555555555

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=8.7e-15  Score=144.73  Aligned_cols=161  Identities=22%  Similarity=0.183  Sum_probs=74.0

Q ss_pred             hhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCC-cccccc-CccccCCCCCcEEeccCCC-ccCC-CChhhh
Q 005711          243 CFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHN-HLNYEI-SPRLVFFEKLLLLDLSFND-LSGP-LPSKIA  318 (681)
Q Consensus       243 ~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~-~~~l~~l~~L~~L~L~~n~-l~~~-~p~~~~  318 (681)
                      ..+..+++|++|+++++.+++..+..++.+++|++|++++| .++... ......+++|++|+++++. ++.. +...+.
T Consensus        65 ~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~  144 (284)
T d2astb2          65 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA  144 (284)
T ss_dssp             HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH
T ss_pred             HHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhc
Confidence            34455666666666666655555555666666666666664 333211 1112345666666666542 2210 011111


Q ss_pred             hcccCCCccEEEccCCC--CcCC-CcccccCCCCCCEEeccCCc-cccccccccCCCCCCCEEEccCC-cCccccCcccc
Q 005711          319 QTTEKAGLVLLDLSHNR--FSGE-IPLKITELKSLQALFLSNNL-LIGEIPARIGNLTYLQVIDLSHN-MLSGSIPLNIV  393 (681)
Q Consensus       319 ~~~~~~~L~~L~Ls~n~--l~~~-~p~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~  393 (681)
                      ..  .+.|+.|+++++.  +++. +......+++|++|++++|. +++.....+.++++|++|++++| .+++.....+.
T Consensus       145 ~~--~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~  222 (284)
T d2astb2         145 HV--SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG  222 (284)
T ss_dssp             HS--CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGG
T ss_pred             cc--ccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHh
Confidence            11  1245556555432  2211 11222345555556655542 44444444555555555555553 34433333333


Q ss_pred             cCCCcceeeccc
Q 005711          394 GCFQLLALIVNN  405 (681)
Q Consensus       394 ~~~~L~~L~l~~  405 (681)
                      .+++|+.|++.+
T Consensus       223 ~~~~L~~L~l~~  234 (284)
T d2astb2         223 EIPTLKTLQVFG  234 (284)
T ss_dssp             GCTTCCEEECTT
T ss_pred             cCCCCCEEeeeC
Confidence            444444444433

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.44  E-value=2.4e-14  Score=146.05  Aligned_cols=65  Identities=23%  Similarity=0.236  Sum_probs=39.1

Q ss_pred             ccccCCCCCCEEECCCCcCCcc----ccccccCCCCCCEEEccCCCCCCc---CC-------ccccCCCCCCEeeCCCC
Q 005711          100 PRLCKLSFLEFLVLSSNAFTGR----ISTCFGGLSGLKTLDLSYNKFVGV---VP-------DAIMKLRNLRELILKGN  164 (681)
Q Consensus       100 ~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~---~p-------~~~~~l~~L~~L~L~~n  164 (681)
                      ..+.+.+.|++|+|++|.+...    +...+...++|+.|+++++.....   .|       ..+..+++|++|++++|
T Consensus        25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n  103 (344)
T d2ca6a1          25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN  103 (344)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccc
Confidence            4456677788888888877543    344566777888888877654311   11       22334555666666555

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=2.9e-13  Score=115.00  Aligned_cols=70  Identities=36%  Similarity=0.395  Sum_probs=40.1

Q ss_pred             cCCcccccccccceeecCCCcCcccCCCcCCCCCCCEEECCCCcCcccC-CccccCCCCCCeEecccCccee
Q 005711          524 TIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQI-PGNISSLQELTLLNLSYNSFSG  594 (681)
Q Consensus       524 ~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ls~N~l~~  594 (681)
                      .+|+.++.+++|+.|++++|+++ .+|.+..+++|+.|++++|+++... ...+..+++|+++++++|++++
T Consensus        34 ~lp~~~~~l~~L~~L~l~~N~i~-~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          34 ALPPALAALRCLEVLQASDNALE-NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCC-CCGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             cchhhhhhhhccccccccccccc-ccCccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            44455555666666666666665 3445556666666666666665332 1345556666666666666553

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.42  E-value=8.9e-14  Score=141.77  Aligned_cols=254  Identities=19%  Similarity=0.200  Sum_probs=116.5

Q ss_pred             cchhhccCCCCCEEEccCCccccC----CChhhcccCcccEEecCCCccccc----------cCccccCCCCCcEEeccC
Q 005711          241 LPCFAASAMSLTVLKLDNNSVVGG----IPTCIASLQALTHLNLSHNHLNYE----------ISPRLVFFEKLLLLDLSF  306 (681)
Q Consensus       241 ~~~~~~~~~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----------~~~~l~~l~~L~~L~L~~  306 (681)
                      +...+.....++.|+|++|.+...    +...+...++|+.++++++.....          +...+..+++|+.|++++
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence            344555667777777777766432    222344556677777665543211          111233345555555555


Q ss_pred             CCccCCCChhhhh-cccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCc
Q 005711          307 NDLSGPLPSKIAQ-TTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLS  385 (681)
Q Consensus       307 n~l~~~~p~~~~~-~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  385 (681)
                      |.++..-...+.. +...++|+.|++++|.+.......++.  .+..+         .........+.|+.+++++|.+.
T Consensus       103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~--~l~~~---------~~~~~~~~~~~L~~l~l~~n~i~  171 (344)
T d2ca6a1         103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--ALQEL---------AVNKKAKNAPPLRSIICGRNRLE  171 (344)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH--HHHHH---------HHHHHHHTCCCCCEEECCSSCCT
T ss_pred             cccccccccchhhhhcccccchheecccccccccccccccc--ccccc---------ccccccccCcccceeeccccccc
Confidence            5554332211111 112224555555555443110000000  00000         00000012334455555554443


Q ss_pred             cc----cCcccccCCCcceeeccccccccc-----CccccCCCCCccEEEcccCcceec----cccccCCCCCCcEEECC
Q 005711          386 GS----IPLNIVGCFQLLALIVNNNNLSGE-----IQPELDALDSLKILDISNNQISGE----IPLTLAGLKSLEIVDFS  452 (681)
Q Consensus       386 ~~----~p~~~~~~~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~  452 (681)
                      ..    +...+..++.++.+++++|.+...     +...+..+++|+.|++++|.++..    +...+..+++|++|+++
T Consensus       172 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls  251 (344)
T d2ca6a1         172 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN  251 (344)
T ss_dssp             GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred             ccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhh
Confidence            21    111223344455555555544321     122344566677777777766432    23445566777777777


Q ss_pred             CCcCCCcch----hhhhc--CCCCCEEEccCCcCcccC----Ccccc-cCCccceeecccCccc
Q 005711          453 SNNLSGSLN----DAITK--WTNLKYFSIARNKLSGNL----PNWLF-SFQAIQMMDFSTNKFM  505 (681)
Q Consensus       453 ~n~l~~~~~----~~~~~--l~~L~~L~L~~n~l~~~~----p~~~~-~l~~L~~L~ls~n~~~  505 (681)
                      +|.+++...    ..+..  .+.|++|++++|++....    ...+. +.+.|+.|++++|++.
T Consensus       252 ~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         252 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             cCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            777664322    22222  345777777777765321    22221 3556666666666654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.38  E-value=8.5e-13  Score=112.03  Aligned_cols=101  Identities=23%  Similarity=0.331  Sum_probs=53.2

Q ss_pred             EEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccccCCCCCcccccCCccccccCCc
Q 005711          448 IVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPK  527 (681)
Q Consensus       448 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~  527 (681)
                      +|++++|+++ .++ .+..+++|++|++++|+++ .+|+.+..+++|+.|++++|.++                  .+| 
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~------------------~l~-   59 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE------------------NVD-   59 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC------------------CCG-
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc------------------ccC-
Confidence            4455555554 222 2444555555555555554 34444455555555555554443                  222 


Q ss_pred             ccccccccceeecCCCcCcccCC-C-cCCCCCCCEEECCCCcCcc
Q 005711          528 GLFQLQGLEYLNLSFNFLDGQVP-G-LYRLRSLRALDLSHNSLTG  570 (681)
Q Consensus       528 ~l~~l~~L~~L~Ls~N~l~~~ip-~-~~~l~~L~~L~Ls~N~l~~  570 (681)
                      .+..+++|++|++++|+++.... . +..+++|+.|++++|.++.
T Consensus        60 ~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          60 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            35556666666666666664322 2 5566677777777776653

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=6.8e-13  Score=118.55  Aligned_cols=109  Identities=25%  Similarity=0.158  Sum_probs=42.1

Q ss_pred             CCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEE
Q 005711          346 ELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKIL  425 (681)
Q Consensus       346 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  425 (681)
                      +...+++|+|++|+++. ++..+..+++|+.|++++|.++. ++ .+..+++|++|++++|.++...+..+..+++|+.|
T Consensus        16 n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             CTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCc-cC-CcccCcchhhhhcccccccCCCccccccccccccc
Confidence            33344444444444442 23333334444444444444432 11 12222233333333333322222222334444444


Q ss_pred             EcccCcceeccc-cccCCCCCCcEEECCCCcCC
Q 005711          426 DISNNQISGEIP-LTLAGLKSLEIVDFSSNNLS  457 (681)
Q Consensus       426 ~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~  457 (681)
                      ++++|++..... ..+..+++|+++++++|.++
T Consensus        93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          93 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             eeccccccccccccccccccccchhhcCCCccc
Confidence            444444432111 23444445555555555443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.2e-12  Score=116.86  Aligned_cols=129  Identities=20%  Similarity=0.191  Sum_probs=105.2

Q ss_pred             cCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCc
Q 005711          368 IGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLE  447 (681)
Q Consensus       368 l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  447 (681)
                      +.+..++++|+|++|+++. ++..+..+++|+.|++++|.+...  +.+..+++|+.|++++|+++...+..+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccc
Confidence            5677889999999999984 566667889999999999999854  3578899999999999999976666667899999


Q ss_pred             EEECCCCcCCCcch-hhhhcCCCCCEEEccCCcCcccCC----cccccCCccceeecc
Q 005711          448 IVDFSSNNLSGSLN-DAITKWTNLKYFSIARNKLSGNLP----NWLFSFQAIQMMDFS  500 (681)
Q Consensus       448 ~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~ls  500 (681)
                      +|++++|+++.... ..+..+++|++|++++|.++. .|    ..+..+++|+.||.+
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTE
T ss_pred             cceeccccccccccccccccccccchhhcCCCcccc-ccchHHHHHHHCCCcCeeCCC
Confidence            99999999974322 467889999999999999874 33    346778888888743

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.15  E-value=5.2e-13  Score=123.74  Aligned_cols=129  Identities=25%  Similarity=0.322  Sum_probs=76.7

Q ss_pred             cccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccccCCCCCcccc
Q 005711          436 IPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMD  515 (681)
Q Consensus       436 ~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~  515 (681)
                      ++..+..+++|++|++++|+++. ++ .+..+++|++|++++|.++ .+|.....++.|+.|++++|+++          
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~----------  106 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA----------  106 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC----------
T ss_pred             hhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccccccccccccccccccccc----------
Confidence            34455566666666666666653 33 3556666666666666665 34443444445555555555443          


Q ss_pred             cCCccccccCCcccccccccceeecCCCcCcccC--CCcCCCCCCCEEECCCCcCcccCCcc----------ccCCCCCC
Q 005711          516 LSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQV--PGLYRLRSLRALDLSHNSLTGQIPGN----------ISSLQELT  583 (681)
Q Consensus       516 Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~i--p~~~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~  583 (681)
                              .+ +.+..+++|+.|++++|+++...  ..+..+++|+.|++++|.+....+..          +..+++|+
T Consensus       107 --------~l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~  177 (198)
T d1m9la_         107 --------SL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK  177 (198)
T ss_dssp             --------CH-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCC
T ss_pred             --------cc-ccccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcC
Confidence                    22 23566777777777777776432  22666777777777777776544432          44567777


Q ss_pred             eEe
Q 005711          584 LLN  586 (681)
Q Consensus       584 ~L~  586 (681)
                      .||
T Consensus       178 ~LD  180 (198)
T d1m9la_         178 KLD  180 (198)
T ss_dssp             EES
T ss_pred             EeC
Confidence            765

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=2.4e-10  Score=100.95  Aligned_cols=92  Identities=21%  Similarity=0.098  Sum_probs=68.3

Q ss_pred             ccccccCCCCCCEEECCCC-cCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhc
Q 005711           98 VHPRLCKLSFLEFLVLSSN-AFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVG  176 (681)
Q Consensus        98 ~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~  176 (681)
                      .|..+..+++|++|++++| .++...+..|.++++|++|++++|+++...|.+|.++++|++|+|++|++ . .+|....
T Consensus        23 ~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l-~-~l~~~~~  100 (156)
T d2ifga3          23 SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL-E-SLSWKTV  100 (156)
T ss_dssp             TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC-S-CCCSTTT
T ss_pred             CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCC-c-ccChhhh
Confidence            4566788889999999766 58877778899999999999999999987788898888888888888843 2 3333333


Q ss_pred             cccCCccEEEccCCcC
Q 005711          177 NFSMNLEKLDFSFNSF  192 (681)
Q Consensus       177 ~l~~~L~~L~L~~n~l  192 (681)
                      .. .+|++|+|++|.+
T Consensus       101 ~~-~~l~~L~L~~Np~  115 (156)
T d2ifga3         101 QG-LSLQELVLSGNPL  115 (156)
T ss_dssp             CS-CCCCEEECCSSCC
T ss_pred             cc-ccccccccCCCcc
Confidence            33 3455666665554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.11  E-value=1e-12  Score=121.70  Aligned_cols=113  Identities=25%  Similarity=0.298  Sum_probs=55.0

Q ss_pred             CcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCC
Q 005711          340 IPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDAL  419 (681)
Q Consensus       340 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l  419 (681)
                      +|..+..+++|++|+|++|+++. ++ .+.++++|++|++++|.++ .+|.....+++|+.|++++|.++..  ..+..+
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l  114 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKL  114 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHHHH
T ss_pred             hhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccccccccccccccccccccccc--cccccc
Confidence            34445555666666666666553 22 3555666666666666554 2333333333444455544444431  123344


Q ss_pred             CCccEEEcccCcceeccc-cccCCCCCCcEEECCCCcCC
Q 005711          420 DSLKILDISNNQISGEIP-LTLAGLKSLEIVDFSSNNLS  457 (681)
Q Consensus       420 ~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~  457 (681)
                      ++|+.|++++|+++.... ..+..+++|++|++++|++.
T Consensus       115 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             ccccccccccchhccccccccccCCCccceeecCCCccc
Confidence            455555555555543211 23445555555555555443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=2e-10  Score=101.37  Aligned_cols=42  Identities=24%  Similarity=0.225  Sum_probs=16.7

Q ss_pred             ccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcC
Q 005711          439 TLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKL  480 (681)
Q Consensus       439 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  480 (681)
                      .|.++++|+.|++++|+++...+.+|..+++|++|+|++|++
T Consensus        51 ~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l   92 (156)
T d2ifga3          51 DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL   92 (156)
T ss_dssp             GSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred             hhccccccCcceeeccccCCcccccccccccccceeccCCCC
Confidence            334444444444444444333333333344444444444433

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=9.2e-08  Score=84.52  Aligned_cols=59  Identities=25%  Similarity=0.168  Sum_probs=33.9

Q ss_pred             cccccccccceeecCCCcCcccCCC--cCCCCCCCEEECCCCcCcccCCcc-------ccCCCCCCeEe
Q 005711          527 KGLFQLQGLEYLNLSFNFLDGQVPG--LYRLRSLRALDLSHNSLTGQIPGN-------ISSLQELTLLN  586 (681)
Q Consensus       527 ~~l~~l~~L~~L~Ls~N~l~~~ip~--~~~l~~L~~L~Ls~N~l~~~~p~~-------l~~l~~L~~L~  586 (681)
                      ..+..+++|+.|+|++|+++. ++.  ......|+.|++++|.+++.....       +..+++|+.||
T Consensus        85 ~~~~~l~~L~~L~Ls~N~i~~-l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1          85 SIVQKAPNLKILNLSGNELKS-ERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             THHHHSTTCCCCCCTTSCCCC-GGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             HHHhhCCcccccccccCcccc-chhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            344556677777777777663 333  223345677777777766544322       34566676664

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=7.6e-07  Score=78.39  Aligned_cols=66  Identities=30%  Similarity=0.297  Sum_probs=28.9

Q ss_pred             cCCCCCcEEeccCCCccCCC--ChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCcccc
Q 005711          294 VFFEKLLLLDLSFNDLSGPL--PSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIG  362 (681)
Q Consensus       294 ~~l~~L~~L~L~~n~l~~~~--p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  362 (681)
                      ..+++|++|+|++|+++..-  +..+..+.   +|+.|++++|.++..-+..+.....|+.|++++|.+..
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~---~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAP---NLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHST---TCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCC---cccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            34555555555555554321  11122222   45555555555553222122223345555555555543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.46  E-value=5.5e-05  Score=66.40  Aligned_cols=61  Identities=18%  Similarity=0.123  Sum_probs=32.4

Q ss_pred             CCCccEEEcccCcceec----cccccCCCCCCcEEECCCCcCCCc-------chhhhhcCCCCCEEEccCCc
Q 005711          419 LDSLKILDISNNQISGE----IPLTLAGLKSLEIVDFSSNNLSGS-------LNDAITKWTNLKYFSIARNK  479 (681)
Q Consensus       419 l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~L~~n~  479 (681)
                      .+.|+.|++++|.+++.    +-..+...++|++|++++|.+...       +...+...++|+.|+++.+.
T Consensus        71 n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          71 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             cccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            44566666666655533    123445556666666666654321       23334445666666665543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.19  E-value=9.7e-05  Score=64.74  Aligned_cols=89  Identities=13%  Similarity=0.064  Sum_probs=62.1

Q ss_pred             ccCCCCCccEEEcccCcceecc----ccccCCCCCCcEEECCCCcCCCc----chhhhhcCCCCCEEEccCCcCccc---
Q 005711          415 ELDALDSLKILDISNNQISGEI----PLTLAGLKSLEIVDFSSNNLSGS----LNDAITKWTNLKYFSIARNKLSGN---  483 (681)
Q Consensus       415 ~~~~l~~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~---  483 (681)
                      .+...+.|+.|++++|.+....    ...+...+.|++|++++|.++..    +-.++...++|++|++++|.+...   
T Consensus        39 ~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~  118 (167)
T d1pgva_          39 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ  118 (167)
T ss_dssp             HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred             HHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHH
Confidence            3456678888999988886432    23445678899999999998843    234566678899999998865421   


Q ss_pred             ----CCcccccCCccceeecccCc
Q 005711          484 ----LPNWLFSFQAIQMMDFSTNK  503 (681)
Q Consensus       484 ----~p~~~~~l~~L~~L~ls~n~  503 (681)
                          +...+...++|+.|+++.+.
T Consensus       119 ~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         119 VEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHHhCCCccEeeCcCCC
Confidence                23444556788888876553

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.72  E-value=0.00058  Score=59.50  Aligned_cols=64  Identities=14%  Similarity=0.139  Sum_probs=32.1

Q ss_pred             CCCCccEEEccc-Ccceec----cccccCCCCCCcEEECCCCcCCCc----chhhhhcCCCCCEEEccCCcCc
Q 005711          418 ALDSLKILDISN-NQISGE----IPLTLAGLKSLEIVDFSSNNLSGS----LNDAITKWTNLKYFSIARNKLS  481 (681)
Q Consensus       418 ~l~~L~~L~Ls~-n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~  481 (681)
                      +.+.|+.|++++ +.++..    +-..+...++|++|++++|.++..    +...+...++++.+++++|.+.
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            345566666655 334322    223344556666666666665532    2223344556666666665554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.36  E-value=0.00073  Score=58.82  Aligned_cols=115  Identities=19%  Similarity=0.223  Sum_probs=52.4

Q ss_pred             cCCCCCCEEeccC-Cccccc----cccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCC
Q 005711          345 TELKSLQALFLSN-NLLIGE----IPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDAL  419 (681)
Q Consensus       345 ~~l~~L~~L~L~~-n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l  419 (681)
                      .+.+.|++|++++ +.++..    +...+...+.|++|++++|.+.......+                    ...+...
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L--------------------~~~l~~~   73 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFAL--------------------AEMLKVN   73 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHH--------------------HHHHHHC
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHH--------------------HHHHhhc
Confidence            3445666666665 233221    22233455556666666665543221111                    1112233


Q ss_pred             CCccEEEcccCcceec----cccccCCCCCCcEEEC--CCCcCCC----cchhhhhcCCCCCEEEccCCc
Q 005711          420 DSLKILDISNNQISGE----IPLTLAGLKSLEIVDF--SSNNLSG----SLNDAITKWTNLKYFSIARNK  479 (681)
Q Consensus       420 ~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L--~~n~l~~----~~~~~~~~l~~L~~L~L~~n~  479 (681)
                      ++++.+++++|.+...    +...+...++|+.++|  ++|.+..    .+...+...++|+.|+++.+.
T Consensus        74 ~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          74 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             ccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            4555566655555432    2233445555655443  3344432    123334455566666655443