Citrus Sinensis ID: 005767

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------68
MASEDGDAVLSDVEGEIDVQTSSDEDFSVERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALSESEKKLGFKEETAAAAMTARDAAEKSLRLADTRASRLRDRVEELSHQLEEFESREDSRGRNRPRYVCWPWQWLGMDFVGVRRSDVQQQSSNEMELSEPLI
ccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcHHHHHHcccccccHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHcHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHccccccccccHHHHHHHHHHccccccc
cccHHHHHHHHHHHHHHHHHcccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEccHHHccccccccccccccccccccHHcccccc
masedgdavlsdvegeidvqtssdedfSVERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVtkardgsrsqldevTKAKDGLRSEIENSAHMLVTGIEKIsgkvsnfknfsagglprsqkytglpaVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIvddgnldqsglseslflpqetdmeENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSkrmsvdpssktNELFKVAENGLREAGIDFKFSKllsdgkvpvsddkanameTEEDEIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALSESEKKLGFKEETAAAAMTARDAAEKSLRLADTRASRLRDRVEELSHQLEEFesredsrgrnrpryvcwpwqwlgmdfvgvrrsdvqqqssnemelsepli
masedgdavlsdvegeidvqtssdedfsvERFREVLAELNRERQAreaaensatelsekfnRLKAlahesikrrdestrqrdealrekeeilrsndklsteiaevniakdevvkqldevtkardgsrsqldevtkakdglrseiensAHMLVTGIEKISGKVSNFKNFSagglprsqkytgLPAVVYGVIKRTNEIVEELVGqidataksrndvREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDlvqkksrevkslneavgqlvkekeHIVSLLRSalskrmsvdpssktnELFKVAENGLREAGIDFKfskllsdgkvpvsDDKANAMETEEDEIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELeekerianesvEGLMLDIAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALsesekklgfkEETAAAAMTARDAAEKSLRLADTRASRLRDRVEElshqleefesredsrgrnrprYVCWPWQWLGMDFVGVRRSDvqqqssnemelsepli
MASEDGDAVLSDVEGEIDVQTSSDEDFSVERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSkihdqvddiikivddGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMkrieeleekeriANESVEGLMLDIAAAEEEISRWKaaaeqeaaagraveqeFVAQLSSLKQELEEAKQALSESEKKLGFKEETaaaamtardaaEKSLRLADTRASRLRDRVEELSHQLEEFESREDSRGRNRPRYVCWPWQWLGMDFVGVRRSDVQQQSSNEMELSEPLI
****************************************************************************************************************************************************HMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDA****************FEIAIEVSELEATI************************************ELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNL*********************RASLAGMESIYQLTRIVVEKTRDLV****************LV****HIVSL*********************KVAENGLREAGIDFKFSKLL********************EIYNLAGALENIVKASQLEIVELRH**********************************************LMLDIA*************************************************************************************************************RYVCWPWQWLGMDFVGVR*******************
********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************CWPWQWL********************ELSEPLI
**********SDVEGEIDVQTSSDEDFSVERFREVLAELNRE*************LSEKFNRLKALAHES***************REKEEILRSNDKLSTEIAEVNIAKDEVVKQLDE******************KDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSA************TNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRW*************VEQEFVAQLSSLK**************KKLGFKEE**************SLRLADTRASRLRDRVEELS***************NRPRYVCWPWQWLGMDFVGVRRS*****************
******DAVLSDVEGEIDVQTSSDEDFSVERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALSESEKKLGFKEETAAAAMTARDAAEKSLRLADTRASRLRDRVEELSHQLEEFESREDSRGRNRPRYVCWPWQWLGMDFVG*********************
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MASEDGDAVLSDVEGEIDVQTSSDEDFSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAHESIKRxxxxxxxxxxxxxxxxxxxxxxxxxxxxIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVxxxxxxxxxxxxxxxxxxxxxISGLREEVAKKSSFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVxxxxxxxxxxxxxxxxxxxxxxxxxxxxKEHIVSLLRSALSKRMSVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGRAVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAAAAMTARDAAEKSxxxxxxxxxxxxxxxxxxxxxxxxxxxxEDSRGRNRPRYVCWPWQWLGMDFVGVRRSDVQQQSSNEMELSEPLI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query678 2.2.26 [Sep-21-2011]
Q5XVA8480 Uncharacterized protein A no no 0.494 0.697 0.338 1e-24
>sp|Q5XVA8|Y3905_ARATH Uncharacterized protein At3g49055 OS=Arabidopsis thaliana GN=At3g49055 PE=2 SV=1 Back     alignment and function desciption
 Score =  115 bits (287), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 124/366 (33%), Positives = 194/366 (53%), Gaps = 31/366 (8%)

Query: 294 LLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIY 353
           LL D  +YV  + D++  +I+ +++ N+           P+E +    +       +SI 
Sbjct: 110 LLSDIADYVRSMEDRLSKLIRCLNEENV-----------PEE-ERGRKLETKEYNSKSIL 157

Query: 354 QLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSK-TN 412
           +L + VV K     +   ++   L+ +V  L +E   I  LLR+AL ++ + +   K  N
Sbjct: 158 ELVKEVVTKLETFQESTKKKKMELSRSVEFLEEENRDINVLLRAALFEKQTAEKQLKEMN 217

Query: 413 E-----LFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENI 467
           +     L ++A  GL+  G  F   +      V  S +  N    EE+    +  A+E  
Sbjct: 218 DQKGLALLQIAGRGLQRIGFGFGLGE-----SVEESSETGNIANEEEEN--GVVIAIEKT 270

Query: 468 VKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGL 527
           +K  + E+ +L+ S+EE R E   L++  E QA++L+     I +L+ +E+   ++VE L
Sbjct: 271 MKKLRQEVSQLKISLEESRLEEVGLRKVTEEQAQKLAENTVYINKLQNQEKFLAQNVEEL 330

Query: 528 MLDIAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQL-SSLKQELEEAKQALSESEKKLGF 586
           +  I  AE E+SRW+ A E E  AG+  E E   QL + LK E+E+ + AL+ SE KL  
Sbjct: 331 VKAIREAESEVSRWREACELEVEAGQR-EVEVRDQLIAVLKSEVEKLRSALARSEGKLKL 389

Query: 587 KEETAAAAMTARDAAEKSLRLADTRASRLRDRVEELSHQLEEFESREDSRGRNRPRYV-C 645
           KEE A AAM A +AAEKSLRLA+ R ++L  R+E L  QLEE ES E  RG  + RYV C
Sbjct: 390 KEELAKAAMVAEEAAEKSLRLAERRIAQLLSRIEHLYRQLEEAESTERRRG--KFRYVWC 447

Query: 646 WP-WQW 650
           WP W++
Sbjct: 448 WPMWRF 453

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query678
359473118696 PREDICTED: uncharacterized protein At3g4 0.985 0.959 0.731 0.0
296081381765 unnamed protein product [Vitis vinifera] 0.933 0.827 0.717 0.0
255548010684 Paramyosin, putative [Ricinus communis] 0.976 0.967 0.695 0.0
147817262730 hypothetical protein VITISV_030267 [Viti 0.967 0.898 0.667 0.0
449494601694 PREDICTED: uncharacterized LOC101212666 0.988 0.965 0.678 0.0
449463814694 PREDICTED: uncharacterized protein LOC10 0.988 0.965 0.676 0.0
224107739673 predicted protein [Populus trichocarpa] 0.955 0.962 0.703 0.0
356525423661 PREDICTED: uncharacterized protein At3g4 0.938 0.962 0.661 0.0
356512652661 PREDICTED: uncharacterized protein At3g4 0.938 0.962 0.648 0.0
297851120679 hypothetical protein ARALYDRAFT_472892 [ 0.963 0.961 0.615 0.0
>gi|359473118|ref|XP_002285440.2| PREDICTED: uncharacterized protein At3g49055-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  962 bits (2486), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/697 (73%), Positives = 592/697 (84%), Gaps = 29/697 (4%)

Query: 4   EDGDAVLSDVEGE------IDVQTSSDEDFSVERFREVLAELNRERQAREAAENSATELS 57
           ED DAVLSDVEG+      I ++  S ED SVERFRE+LAE++RERQAREAAENS +EL 
Sbjct: 7   EDADAVLSDVEGDDPVPVPIVIKNPSQEDVSVERFRELLAEVDRERQAREAAENSKSELL 66

Query: 58  EKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLD 117
             FNRLK+LAHE+IK+RDESTRQRDEALREKEE+LRSNDK+S E+AE    KDEV+KQ D
Sbjct: 67  VAFNRLKSLAHEAIKKRDESTRQRDEALREKEEVLRSNDKVSGELAEAIKLKDEVLKQRD 126

Query: 118 EVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQ 177
           E+ K       QLDE  KA++  RSEIE SA MLVTGIEKISGKVSNFKNF+AGGLPRSQ
Sbjct: 127 EIAK-------QLDEAVKAREASRSEIETSAQMLVTGIEKISGKVSNFKNFTAGGLPRSQ 179

Query: 178 KYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATIS 237
           KYTGLPA+ YGVIKRTNEIVEELV Q+DAT KSRND REQME RN+EIAIEVS+LEATIS
Sbjct: 180 KYTGLPAIAYGVIKRTNEIVEELVRQMDATTKSRNDAREQMEHRNYEIAIEVSQLEATIS 239

Query: 238 GLREEVAKKSSFIENLEKSLIEKDEKVAEIE-----------SQGLELRQLVNEYEDKLK 286
           GLREEV+KK+S +EN+EKS+ EKD K++++E           ++  EL+Q+V+EY+ KL 
Sbjct: 240 GLREEVSKKTSVVENVEKSMAEKDAKISDMEREMSEKIQLAENEMSELKQIVSEYDLKLG 299

Query: 287 NLES----HRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENI 342
           NLES     R LL DQLN VSKIHD++ D+I+IVDD  LDQS +SESLFLPQ TDMEENI
Sbjct: 300 NLESIMESQRHLLFDQLNLVSKIHDRIYDVIRIVDDNKLDQSEVSESLFLPQATDMEENI 359

Query: 343 RASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKR 402
           RASLAGMESIY+LTRIV EK R+L++ +SRE KSLNE V +LVKEKE I S LRSALS+R
Sbjct: 360 RASLAGMESIYELTRIVGEKIRNLMEDQSREAKSLNETVTRLVKEKEQIGSFLRSALSRR 419

Query: 403 MSVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAG 462
           M++DPSSK  ELF+VAENGLREAGI+FKFS LL DGKV  S DKA  +ETEEDE+YN+ G
Sbjct: 420 MALDPSSKMKELFQVAENGLREAGIEFKFSNLLEDGKVMASHDKAGVLETEEDELYNMTG 479

Query: 463 ALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANE 522
           ALE+IVKASQLEI+EL+HSV+ELRAESSLLKEH+EAQAKEL+HR +RIEELEEKER+ANE
Sbjct: 480 ALEHIVKASQLEIIELQHSVDELRAESSLLKEHMEAQAKELNHRQRRIEELEEKERVANE 539

Query: 523 SVEGLMLDIAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALSESEK 582
           SVEGLM+DIAAAEEEI+RWK AAEQEAAAGRAVEQEFV+QLS+++QEL+EAKQA+ ESEK
Sbjct: 540 SVEGLMMDIAAAEEEITRWKVAAEQEAAAGRAVEQEFVSQLSAIRQELKEAKQAVMESEK 599

Query: 583 KLGFKEETAAAAMTARDAAEKSLRLADTRASRLRDRVEELSHQLEEFESREDS-RGRNRP 641
           KL FKEETAAAAM ARDAAEKSLRLAD RASRLRDRVEEL+HQLEE ++REDS R RN P
Sbjct: 600 KLKFKEETAAAAMEARDAAEKSLRLADLRASRLRDRVEELTHQLEESDTREDSRRSRNGP 659

Query: 642 RYVCWPWQWLGMDFVGVRRSDVQQQSSNEMELSEPLI 678
           RYVCWPW+WLG++FVG+ + D  QQ+SNEMELSEPL+
Sbjct: 660 RYVCWPWEWLGLNFVGLHQPDTNQQNSNEMELSEPLL 696

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296081381|emb|CBI16814.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255548010|ref|XP_002515062.1| Paramyosin, putative [Ricinus communis] gi|223546113|gb|EEF47616.1| Paramyosin, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147817262|emb|CAN66327.1| hypothetical protein VITISV_030267 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449494601|ref|XP_004159594.1| PREDICTED: uncharacterized LOC101212666 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449463814|ref|XP_004149626.1| PREDICTED: uncharacterized protein LOC101212666 [Cucumis sativus] Back     alignment and taxonomy information
>gi|224107739|ref|XP_002314584.1| predicted protein [Populus trichocarpa] gi|222863624|gb|EEF00755.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356525423|ref|XP_003531324.1| PREDICTED: uncharacterized protein At3g49055-like [Glycine max] Back     alignment and taxonomy information
>gi|356512652|ref|XP_003525032.1| PREDICTED: uncharacterized protein At3g49055-like [Glycine max] Back     alignment and taxonomy information
>gi|297851120|ref|XP_002893441.1| hypothetical protein ARALYDRAFT_472892 [Arabidopsis lyrata subsp. lyrata] gi|297339283|gb|EFH69700.1| hypothetical protein ARALYDRAFT_472892 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query678
TAIR|locus:2024081678 AT1G24560 "AT1G24560" [Arabido 0.963 0.963 0.556 7.6e-183
TAIR|locus:504955632480 AT3G49055 [Arabidopsis thalian 0.455 0.643 0.293 2.9e-25
TAIR|locus:21529851586 CIP1 "COP1-interactive protein 0.700 0.299 0.225 1.1e-15
UNIPROTKB|F1MMB4 1483 F1MMB4 "Uncharacterized protei 0.912 0.417 0.207 2.7e-15
WB|WBGene000116961205 eea-1 [Caenorhabditis elegans 0.874 0.492 0.216 1.9e-14
TAIR|locus:2156922788 ATGRIP [Arabidopsis thaliana ( 0.706 0.607 0.227 2.8e-14
UNIPROTKB|J9P8I1 2015 CROCC "Uncharacterized protein 0.883 0.297 0.221 3.7e-12
ZFIN|ZDB-GENE-060503-506 1041 si:ch211-250g4.3 "si:ch211-250 0.831 0.541 0.191 6.3e-12
UNIPROTKB|F1Q2C0 2018 CROCC "Uncharacterized protein 0.883 0.296 0.221 7.4e-12
DICTYBASE|DDB_G02905031492 DDB_G0290503 [Dictyostelium di 0.883 0.401 0.182 1e-11
TAIR|locus:2024081 AT1G24560 "AT1G24560" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1774 (629.5 bits), Expect = 7.6e-183, P = 7.6e-183
 Identities = 386/694 (55%), Positives = 490/694 (70%)

Query:     5 DGDAVLSDVEGE----IDVQTSSDEDFSVERFREVLAELNRERQAREAAENSATELSEKF 60
             D DAVLSDVE +    + ++ S  E+ S ER  E++AEL+RE++AREAAE+S +EL   F
Sbjct:     6 DEDAVLSDVESDEPAPVVLKDSPREEASDERITELIAELDREKKAREAAESSKSELQVSF 65

Query:    61 NRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVT 120
             NRLKALA E+IK+RDES R+RDEAL+EKE        L+ E+  VN  KDE+ K+LDE  
Sbjct:    66 NRLKALAVEAIKKRDESKRERDEALKEKEN-------LTNELENVNKGKDEMSKKLDEAL 118

Query:   121 KARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYT 180
             ++RDG              L++EIENS+HMLV+GIEKISGKVS+FKNFS GGLP+SQKYT
Sbjct:   119 RSRDG--------------LKAEIENSSHMLVSGIEKISGKVSSFKNFSNGGLPKSQKYT 164

Query:   181 GLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLR 240
             GL +V YGVIKRTNEIVEELV QID TAKSRN+ REQM+QRN+EIAIEVS+LE+ IS LR
Sbjct:   165 GLTSVAYGVIKRTNEIVEELVRQIDTTAKSRNEAREQMDQRNYEIAIEVSQLESAISNLR 224

Query:   241 EEVAKKSSFIENLEKSLIEKDEKVAEIESQGLE-----------LRQLVNEYEDKLKNLE 289
              EVA+K+S +++LE+ + EK++++AE+E   LE           L+QLV+EY+ KLK +E
Sbjct:   225 LEVAEKASIVDDLERGVSEKEKRIAELEKGNLEKVSLLEGEVVELKQLVDEYDGKLKTME 284

Query:   290 ----SHRPLLVDQLNYVSXXXXXXXXXXXXXXXGNLDQSGLSESLFLPQETDMEENIRAS 345
                 + RPLL+DQLN VS                + +QS LSES F+PQET+MEENIRAS
Sbjct:   285 LKMVAQRPLLMDQLNLVSRIHDQLYEVVRIVDGNSSEQSDLSESFFMPQETEMEENIRAS 344

Query:   346 LAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSV 405
             LAGMESI++LT++V  K + LV++KS E+K+LNE VG LVKEKEHI +LLRSALSKR+  
Sbjct:   345 LAGMESIFELTKVVSGKAQSLVEEKSHELKNLNETVGLLVKEKEHIGTLLRSALSKRVIG 404

Query:   406 DPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVS-DDKANAMETEEDEIYNLAGAL 464
             +  S+  ELF+ AENGLR+ G D KF+KLL DGKV  S  D  +    E++EIY+LA  L
Sbjct:   405 EQPSQKRELFQAAENGLRDGGTDSKFAKLLKDGKVQDSRSDNTHDHSKEDNEIYSLASTL 464

Query:   465 ENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMXXXXXXXXXXXXANESV 524
             ENIVKASQLEIVEL+H +E  R E+S L++ L+ Q KEL+ RM            ANE+V
Sbjct:   465 ENIVKASQLEIVELQHLLEASREETSSLRKQLDTQTKELNQRMRQIEELKEKERIANENV 524

Query:   525 EGLMLDIAAAEEEISRWKXXXXXXXXXXXXXXXXFVAQLSSLKQELEEAKQALSESEKKL 584
             EGLM DIAAAEEEI+RWK                F +QL  LK+ELEEAKQA+ ESEKKL
Sbjct:   525 EGLMTDIAAAEEEITRWKVAAEQEAAAGGAVEQDFTSQLYVLKEELEEAKQAIIESEKKL 584

Query:   585 GFKEETXXXXXXXXXXXEKSLRLADTRASRLRDRVEELSHQLEEFESREDSRGRNRPRYV 644
              FKEET           E+SLRLAD RA++LR+R++EL+ ++EE E+  D    NR RY 
Sbjct:   585 KFKEETAAAAMGARDAAERSLRLADNRATKLRERIQELNRKVEELETHRDMNTSNRARYA 644

Query:   645 CWPWQWLGMDFVGVRRSDVQQQSSNEMELSEPLI 678
             CWPWQ LG+DFVG RR +  Q+S+NEMEL+EPL+
Sbjct:   645 CWPWQLLGIDFVGSRRIESGQESANEMELAEPLL 678
GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0006486 "protein glycosylation" evidence=RCA
GO:0006816 "calcium ion transport" evidence=RCA
GO:0009630 "gravitropism" evidence=RCA
TAIR|locus:504955632 AT3G49055 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2152985 CIP1 "COP1-interactive protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1MMB4 F1MMB4 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
WB|WBGene00011696 eea-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
TAIR|locus:2156922 ATGRIP [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|J9P8I1 CROCC "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060503-506 si:ch211-250g4.3 "si:ch211-250g4.3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q2C0 CROCC "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0290503 DDB_G0290503 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query678
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 3e-09
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 4e-09
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 8e-09
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 7e-07
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 9e-07
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 6e-06
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-05
PRK02224 880 PRK02224, PRK02224, chromosome segregation protein 3e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 4e-05
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 3e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 4e-04
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 4e-04
pfam07111 739 pfam07111, HCR, Alpha helical coiled-coil rod prot 8e-04
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.001
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.001
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.002
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.002
PRK02224 880 PRK02224, PRK02224, chromosome segregation protein 0.003
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.004
TIGR03185 650 TIGR03185, DNA_S_dndD, DNA sulfur modification pro 0.004
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information 
 Score = 60.1 bits (146), Expect = 3e-09
 Identities = 48/201 (23%), Positives = 83/201 (41%), Gaps = 3/201 (1%)

Query: 442 VSDDKANAMETEEDEIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAK 501
           +   +   +  E +E+       E  ++    E+ EL   +EELR E S L+E +E   K
Sbjct: 229 LLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQK 288

Query: 502 ELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAA---AEQEAAAGRAVEQE 558
           EL      I  LE++++I  E +  L   +   E ++   ++      +E A      +E
Sbjct: 289 ELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEE 348

Query: 559 FVAQLSSLKQELEEAKQALSESEKKLGFKEETAAAAMTARDAAEKSLRLADTRASRLRDR 618
              +L SL+ ELEE +  L E E +L   EE      +     E  +   +    RL  R
Sbjct: 349 LKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEAR 408

Query: 619 VEELSHQLEEFESREDSRGRN 639
           +E L  + E  +   +   + 
Sbjct: 409 LERLEDRRERLQQEIEELLKK 429

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|148617 pfam07111, HCR, Alpha helical coiled-coil rod protein (HCR) Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 678
PRK02224880 chromosome segregation protein; Provisional 98.52
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 98.42
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 98.17
PF10174 775 Cast: RIM-binding protein of the cytomatrix active 98.16
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 98.0
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 97.83
PRK02224 880 chromosome segregation protein; Provisional 97.62
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 97.62
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 97.6
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 97.36
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 96.37
PF07888 546 CALCOCO1: Calcium binding and coiled-coil domain ( 96.32
PHA02562562 46 endonuclease subunit; Provisional 96.17
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 96.1
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 95.7
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 95.4
PRK04863 1486 mukB cell division protein MukB; Provisional 95.39
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 95.38
PF05701522 WEMBL: Weak chloroplast movement under blue light; 95.31
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 95.26
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 95.11
COG4942420 Membrane-bound metallopeptidase [Cell division and 95.08
PRK03918880 chromosome segregation protein; Provisional 94.96
PF01576859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 94.88
PF10174775 Cast: RIM-binding protein of the cytomatrix active 94.84
PRK11637428 AmiB activator; Provisional 94.78
PRK03918 880 chromosome segregation protein; Provisional 94.72
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 94.55
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 94.34
PRK09039343 hypothetical protein; Validated 94.19
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 92.32
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 91.82
PF05701522 WEMBL: Weak chloroplast movement under blue light; 91.14
PF10481307 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0 91.06
PHA02562562 46 endonuclease subunit; Provisional 90.81
TIGR01843423 type_I_hlyD type I secretion membrane fusion prote 90.42
PF01576 859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 90.16
PF03148384 Tektin: Tektin family; InterPro: IPR000435 Tektin 89.68
PF135141111 AAA_27: AAA domain 89.11
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 87.78
PF04156191 IncA: IncA protein; InterPro: IPR007285 Chlamydia 87.13
PRK11637428 AmiB activator; Provisional 87.13
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 87.06
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 86.93
PF00038312 Filament: Intermediate filament protein; InterPro: 86.52
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 86.07
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 86.07
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 85.84
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 85.66
PF11559151 ADIP: Afadin- and alpha -actinin-Binding; InterPro 85.48
PRK04863 1486 mukB cell division protein MukB; Provisional 85.4
PF15070 617 GOLGA2L5: Putative golgin subfamily A member 2-lik 85.36
PRK04778569 septation ring formation regulator EzrA; Provision 85.11
PF09325236 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vp 84.34
PF15066527 CAGE1: Cancer-associated gene protein 1 family 84.12
TIGR02680 1353 conserved hypothetical protein TIGR02680. Members 83.89
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 83.89
PF06008264 Laminin_I: Laminin Domain I; InterPro: IPR009254 L 82.45
KOG0996 1293 consensus Structural maintenance of chromosome pro 81.75
PF05557 722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 80.62
KOG0977 546 consensus Nuclear envelope protein lamin, intermed 80.02
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information 
Probab=98.52  E-value=0.0043  Score=70.29  Aligned_cols=95  Identities=20%  Similarity=0.223  Sum_probs=46.1

Q ss_pred             hhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHH-------HHHHHHhhchhhhchhhHHhhhhHHHHHHHH
Q 005767          237 SGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLV-------NEYEDKLKNLESHRPLLVDQLNYVSKIHDQV  309 (678)
Q Consensus       237 s~lr~eva~k~s~~e~l~k~~~eke~ki~ele~E~~~Lk~~v-------~e~e~kl~~~e~~r~lL~dql~~v~~ihd~L  309 (678)
                      ..++.+++...+.++.+...+...+..+..++.+...++..+       +.|+..|..++....-|.+.++-+......+
T Consensus       359 ~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~  438 (880)
T PRK02224        359 EELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTA  438 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444444444444444444443333       3455555555555555555555555555555


Q ss_pred             HHHHhhhc---CCCccccccccccCCC
Q 005767          310 DDIIKIVD---DGNLDQSGLSESLFLP  333 (678)
Q Consensus       310 ~~vi~~vd---~~~~~~~~lsEs~f~~  333 (678)
                      ...+..+.   .+..  -.+|.+.|.+
T Consensus       439 ~~~l~~~~~~l~~~~--Cp~C~r~~~~  463 (880)
T PRK02224        439 RERVEEAEALLEAGK--CPECGQPVEG  463 (880)
T ss_pred             HHHHHHHHHHHhccc--CCCCCCcCCC
Confidence            55555554   2322  2456666653

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore [] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules [] Back     alignment and domain information
>PF13514 AAA_27: AAA domain Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking Back     alignment and domain information
>PF15066 CAGE1: Cancer-associated gene protein 1 family Back     alignment and domain information
>TIGR02680 conserved hypothetical protein TIGR02680 Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query678
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-09
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 8e-08
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 9e-08
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 5e-07
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 3e-06
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-05
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 4e-05
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-04
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-08
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 1e-07
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-06
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 3e-05
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 7e-05
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 6e-04
2zuo_A861 MVP, major vault protein; repeat domains, protein- 4e-05
2zuo_A861 MVP, major vault protein; repeat domains, protein- 5e-04
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 1e-04
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 1e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 77.2 bits (189), Expect = 1e-14
 Identities = 79/578 (13%), Positives = 189/578 (32%), Gaps = 147/578 (25%)

Query: 81  RDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKAR---DGSRSQLDEVTKA- 136
            +   ++ +++ +S   LS E  E+    D ++   D V+          S+ +E+ +  
Sbjct: 31  DNFDCKDVQDMPKS--ILSKE--EI----DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF 82

Query: 137 ------------KDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPA 184
                          +++E    + M    IE+     ++ + F+   + R Q Y  L  
Sbjct: 83  VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142

Query: 185 VVYGVIKRTNEIVEELVGQIDATAKS-------RNDVREQMEQRNFEIA-IEVSELEATI 236
            +  +    N +++ ++G    + K+        +   +   + +F+I  + +       
Sbjct: 143 ALLELRPAKNVLIDGVLG----SGKTWVALDVCLSYKVQC--KMDFKIFWLNLKNCN--- 193

Query: 237 SGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRP--- 293
                      + +E L+K L + D            ++  ++  + +L+ L   +P   
Sbjct: 194 --------SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 294 -LLVDQLNYVSKIHDQVDDI--IKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGME 350
            LLV            + ++   K  +  NL      + L     T   + +   L+   
Sbjct: 246 CLLV------------LLNVQNAKAWNAFNLS----CKILL----TTRFKQVTDFLSAAT 285

Query: 351 SIYQLTRIVVEKTRD-LVQKKSREV--KSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDP 407
           +    T I ++     L   + + +  K L+     L +E         S +++ +    
Sbjct: 286 T----THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341

Query: 408 S----------SKTNELFKVAENGLREAGIDFK--FSKLL---SDGKVPV-------SDD 445
           +           K   + + + N L  A  +++  F +L        +P         D 
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPA--EYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399

Query: 446 KANAMETEEDEIYNLAGALENIVKASQLEI----VELRHSVEELRAESSLLKEHLEAQAK 501
             + +    ++++     +E   K S + I    +EL+  +E   A    + +H      
Sbjct: 400 IKSDVMVVVNKLHKY-SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458

Query: 502 E-----------------LSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRW-KA 543
                             + H +K IE  E            + LD         R+ + 
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM-----TLFRMVFLDF--------RFLEQ 505

Query: 544 AAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALSESE 581
               ++ A  A        + +  Q+L+  K  + +++
Sbjct: 506 KIRHDSTAWNA-----SGSILNTLQQLKFYKPYICDND 538
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query678
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 97.19
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 96.53
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 96.19
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 94.31
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 93.09
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 92.14
2ocy_A154 RAB guanine nucleotide exchange factor SEC2; RAB, 92.04
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 90.34
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 87.59
3tnu_B129 Keratin, type II cytoskeletal 5; coiled-coil, stru 83.71
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 81.59
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
Probab=97.19  E-value=0.0019  Score=74.58  Aligned_cols=21  Identities=24%  Similarity=0.358  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHHHhHhhhhhh
Q 005767          612 ASRLRDRVEELSHQLEEFESR  632 (678)
Q Consensus       612 aA~LReRIEELtRQLEE~Esr  632 (678)
                      -..|...+++|..+|++...-
T Consensus      1146 ~~~L~~ele~L~~~Ieel~~v 1166 (1184)
T 1i84_S         1146 KRDLSEELEALKTELEDTLDT 1166 (1184)
T ss_dssp             ---------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhhH
Confidence            346777777777777776543
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} Back     alignment and structure
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00