Citrus Sinensis ID: 005768

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------68

MIPSLSTARSNWLELQSKLIMKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVKKKIAKGRRKVKSSPSNDLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRGESSTSSDDTSSPSRLLGSDVSLQGTADTLFDISGSPLADFHAHERLLQRVSQDDTNTVDFIFISQPSKSDSDSGISDPQHLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSNYALNWKLLTISGQGNEGETRQSSGSCPGYPYFLTVLQAS

cccccccccccHHccccHHHHHHcccccEEEcccEEEEEEEEEccccccEEEEEEEEEEEEEEccccccccccccccccccHHHccccccccccccccccEEEEEEEEEEccccEEEEEEEEEEcEEEEEEEEEEEEEEEccEEEEEEEEcccEEEccccccccccccccccEEEEEEcccccEEEEEEcccccEEcccEEEEEEEEEEccccccccEEEEEccccEEEEccccccccccHHHHccccccccccccccccccccEEEEccccccccccccEEEEEEEEEccccEEEEEEEEEEEEccccccccEEEEEEEEEEEEEEcEEEEEEEEEccccccEEEEEEEEEEccccccEEEEEEEEEEccEEEEEcccccccccccccccccEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccEEEEEEcccccccccccccccccccccccccccccccEEEEEccccEEEEccccccccccEEEEEEccccccEEEEEEcccccccccccccccccEEEcccccccccEEEcEEEccccccccccccccccccccccccEEEEEcccEEEEEccccEEEEEEEEEEEEccEEEccccEEEEEEEEcccccccccccccccccccccEEEEEEEcc

cccccccccccHHHccccccHHHHccccEEEEccEEEEEEEEEccccEEEEEccEEEEEEEEccccccccccccccccccccccccEEEEcccccccccEEEEEEEEEEEccccEEEEEEEEEEcccEEEEEEEEEEEEcccEccEEEEcccccccccccccccccccccccEEEEEcccccEEEEEEEcccHHHccccEEEEEEEEEEccccccccEEEEEccccEEEEcccccccccccHHHHcccccccccccccccccccEEEccccccccccccEEEEEEEEEccccccEEEEEEEEEEccccccccEEEEEEEEEEEEEEccEEEEEEEEEcccccccEEEEEEEEEccccccEEEEEEEEEcccEEEEccccccccccccccccccEEEEEEEEcccccccccccccccccHccccccEcccccccHHHccccHHHcHHHHHHHHccccccccccEEEEEEEEEEcccccccccccccHHHHHHHHHHccccccccccccccccHcHHHHHccccccccEcccccHHHHHHHEEEcccccccccccccEEEEEEEEEcccccccEEEEEEEEcccccccccccccccccccccccEEEEEcEEEEEEEccccEEEEEEEEEEEcccEEEcccEEEEEEEcccccccccccccccccccccccEEEEEEEcc

MIPSLSTARSNWLELQSKLIMKKFEesnicvagepvkvdiefknplqipisisnISLICElstrsdemesdsnssttelqndEESKLLTttgemnsdtssfTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVKKKIAkgrrkvksspsndlKFIVIKSlpkleglihplperayaGDLRHLVLELKnqsdfsvknlkmkvshprflsignrddmtkEFPACLQKMTNaeqsvaggnfnkmpqavfsfpegisiqgetpllwplwyraavpgkisLSITIYYEMGDVSSVIKYRLLRMHYnlevlpslnvsfqispwsSRLQQYLVRMDVVnqtssenfqihqlssvghqweisllqpfdsifpseslfagqALSCFFMLknrgesstssddtsspsrllgsdvslqgtadtlfdisgspladfhAHERLLQRvsqddtntvdfifisqpsksdsdsgisdpqhlfshhachcsilgktpitwlvdgprtlhhnfnasfceVNLKMTIYNSSDAAMFVRVntfdspsssgqtseatsprsavpsgnqagwhdvpvltdikvtsqlplnqvkrssllesvspfiwsgssassvrlqpmsttdiamkvclfspgtydlsnyALNWKLLTisgqgnegetrqssgscpgypyFLTVLQAS

mipslstarsNWLELQSKLIMKKFEESNICVAGEPVKVDIEFKNplqipisisnISLICELSTRSdemesdsnssttelqndeESKLLTTtgemnsdtsSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGvynfesnlvkkkiakgrrkvksspsndlkfiVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQsdfsvknlkmkvshprflsignrdDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRGESstssddtsspsrlLGSDVSLQGTADTLFDISGSPLADFHAHERLLQRVSQDDTNTVDFIFISQPSKSDSDSGISDPQHLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLEsvspfiwsgssassVRLQPMSTTDIAMKVCLFSPGTYDLSNYALNWKLLTISGQGNEGetrqssgscpgypYFLTVLQAS

MIPSLSTARSNWLELQSKLIMKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLvkkkiakgrrkvkSSPSNDLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRGEsstssddtsspsRLLGSDVSLQGTADTLFDISGSPLADFHAHERLLQRVSQDDTNTVDFIFISQPSKSDSDSGISDPQHLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSNYALNWKLLTISGQGNEGETRQSSGSCPGYPYFLTVLQAS

***********WLELQSKLIMKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICEL****************************************TLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVKKKIA************DLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGN*******FPACLQ**********GGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFML******************************DTLFDISGSPLADFHAHERLLQRVSQDDTNTVDFIFI****************HLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNT**************************GWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSG**********MSTTDIAMKVCLFSPGTYDLSNYALNWKLLTIS***************PGYPYFLTVL***

*******ARSN*******************VAGEPVKVDIEFKNPLQIPISISNISLICELSTRS******************************SDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNF**********************DLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDM******************************F*F*E*I*IQGETPLLWPLWYRAAVPGKISLSITIYYEMGDV**VIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEI*L*************FAGQALSCFFM********************LGSDVSL*********ISGSPLADFH***************TVDFIFISQPSK*************FSHHACHCSILGKTPITWLVDGP***************LKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLT************************FIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSNYALNW**********************GYPYFLTVLQA*

*********SNWLELQSKLIMKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELS**********************SKLLTTTGEMNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVKKKI************NDLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNR***************LLGSDVSLQGTADTLFDISGSPLADFHAHERLLQRVSQDDTNTVDFIFISQ***********DPQHLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTF**********************NQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSNYALNWKLLTISGQ***********SCPGYPYFLTVLQAS

*********S*W**LQSKLIMKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEM****************SKLLTTTGEMNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVK*********VKSSPSNDLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPAC*QKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNR*********TSSPSRLLGSDVSLQGTADTLFDISGSPLADFHAHERLLQRVSQDDTNTVDFIFISQPSKSDSDSGISDPQHLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTS**********SLLESVSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSNYALNWKLLTI***************CPGYPYFLTVLQA*

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		678	2.2.26 [Sep-21-2011]
Q9Y2L5		1435	Trafficking protein parti	yes	no	0.839	0.396	0.223	6e-08

>sp\|Q9Y2L5\|TPPC8_HUMAN Trafficking protein particle complex subunit 8 OS=Homo sapiens GN=TRAPPC8 PE=1 SV=2	Back alignment and function desciption

 Score = 60.1 bits (144), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 155/695 (22%), Positives = 266/695 (38%), Gaps = 126/695 (18%)

Query: 29   ICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLL 88
            + V  EP+ V++ F+NPL++ + ++++SL+ +   + D    D         N+E  +L+
Sbjct: 748  LAVVEEPITVEVAFRNPLKVLLLLTDLSLLWKFHPK-DFSGKD---------NEEVKQLV 797

Query: 89   TTTGEMNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLS-------- 140
            T+  EM     +  +SE  I+  G E+ + +L + P   G L I+GV + L         
Sbjct: 798  TSEPEM---IGAEVISEFLIN--GEESKVARLKLFPHHIGELHILGVVYNLGTIQGSMTV 852

Query: 141  ---GSLVGVYNFESNL---VKKK------------IAKGRRKVKSSPSNDLKFIVIKSLP 182
               G+L G +  + +L   V+ K              + +  VK  P   L  I+ + +P
Sbjct: 853  DGIGALPGCHTGKYSLSMSVRGKQDLEIQGPRLNNTKEEKTSVKYGPDRRLDPIITEEMP 912

Query: 183  KLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGN---------- 232
             LE      P     G++R   +E  N S   +  LK+    P F + G           
Sbjct: 913  LLEVFFIHFPTGLLCGEIRKAYVEFVNVSKCPLTGLKVVSKRPEFFTFGGNTAVLTPLSP 972

Query: 233  ---------RDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAV-FSFPEGISIQGETPLL 282
                     +  +T     C   +++A     G      P+ +    P+ + + G +  L
Sbjct: 973  SASENCSAYKTVVTDATSVCTALISSASSVDFGIGTGSQPEVIPVPLPDTVLLPGASVQL 1032

Query: 283  WPLWYRAA-VPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSS- 340
             P+W R     G   ++   YYE       I++R+LR    +    SLNV   +   +S 
Sbjct: 1033 -PMWLRGPDEEGVHEINFLFYYESVKKQPKIRHRILRHTAIICTSRSLNVRATVCRSNSL 1091

Query: 341  -----RLQQYLVRMDVVNQTSSE----NFQIHQLSSVGHQWE----ISLLQPFDSIFPS- 386
                 R    LV +DV N  +SE     F I Q+SS    W+    ++L +  D+   S 
Sbjct: 1092 ENEEGRGGNMLVFVDVENTNTSEAGVKEFHIVQVSSSSKHWKLQKSVNLSENKDTKLASR 1151

Query: 387  -ESLFAGQALSCFFMLKNRGESST-SSDDTSSPSRLLGSD---VSLQGTADTLFDISGSP 441
             +  F  +A+ C      + E++T SS+  +    + G++    S    AD  +    S 
Sbjct: 1152 EKGKFCFKAIRC-----EKEEAATQSSEKYTFADIIFGNEQIISSASPCADFFYRSLSSE 1206

Query: 442  LADFHAH-------------ERLLQRVSQDDTNTVDFIFISQPSKSDSDSGISDPQHLFS 488
            L    AH              RL+Q+ S+ D N V  I        DS   I + Q    
Sbjct: 1207 LKKPQAHLPVHTEKQSTEDAVRLIQKCSEVDLNIV--ILWKAYVVEDSKQLILEGQ---- 1260

Query: 489  HHACHCSILGKTPITW--LVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDS 546
            HH      +GK   ++    + P      F   F   N+ ++   S +    +   +   
Sbjct: 1261 HHVI-LRTIGKEAFSYPQKQEPPEMELLKF---FRPENITVSSRPSVEQLSSLIKTSLHY 1316

Query: 547  PSSSG----QTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSP 602
            P S      Q S    P + + S       DV V+ D++  +  P         LE    
Sbjct: 1317 PESFNHPFHQKSLCLVPVTLLLSNCSKA--DVDVIVDLRHKTTSP-------EALEIHGS 1367

Query: 603  FIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDL 637
            F W G +   ++L+      + +K C    G Y+L
Sbjct: 1368 FTWLGQTQYKLQLKSQEIHSLQLKACFVHTGVYNL 1402

May be involved in endoplasmic reticulum to Golgi apparatus trafficking at a very early stage.
Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		678
255566159		1284	conserved hypothetical protein [Ricinus	0.952	0.503	0.631	0.0
296089365		1262	unnamed protein product [Vitis vinifera]	0.976	0.524	0.608	0.0
359481103		1289	PREDICTED: trafficking protein particle	0.976	0.513	0.608	0.0
356503854		1289	PREDICTED: trafficking protein particle	0.983	0.517	0.579	0.0
449437874		1288	PREDICTED: trafficking protein particle	0.989	0.520	0.569	0.0
356572633		1257	PREDICTED: trafficking protein particle	0.983	0.530	0.573	0.0
356572629		1283	PREDICTED: trafficking protein particle	0.983	0.519	0.573	0.0
356572631		1254	PREDICTED: trafficking protein particle	0.983	0.531	0.573	0.0
297811763		1249	binding protein [Arabidopsis lyrata subs	0.960	0.521	0.542	0.0
334187712		1244	uncharacterized protein [Arabidopsis tha	0.957	0.521	0.535	0.0

>gi\|255566159\|ref\|XP_002524067.1\| conserved hypothetical protein [Ricinus communis] gi\|223536635\|gb\|EEF38277.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

 Score =  840 bits (2169), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/657 (63%), Positives = 510/657 (77%), Gaps = 11/657 (1%)

Query: 1    MIPSLSTARSNWLELQSKLIMKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICE 60
            MIPSLS A+SNWLELQSK++ K F+++NICVAGE +KV IEF+NPL+IPIS+S++SLICE
Sbjct: 615  MIPSLSAAKSNWLELQSKVVPKSFKDANICVAGEAIKVRIEFQNPLKIPISLSSVSLICE 674

Query: 61   LSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISLGGAETILVQL 120
            LS  SD+M SD+ SS TE QNDEE K L   G++ SD S FTLSE D +L G E ILV L
Sbjct: 675  LSG-SDDMNSDAGSSATEHQNDEECKKL---GDLTSDNSLFTLSEADFTLEGDEKILVHL 730

Query: 121  MVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVKKKIAKGRRKVKSSPSNDLKFIVIKS 180
             VTPKVEG LKIVG+RW+LSGS++G YN ESNLVK KI KGRRK K SP + LKFIVIK+
Sbjct: 731  TVTPKVEGSLKIVGIRWKLSGSVLGYYNLESNLVKGKITKGRRKAKHSPKSYLKFIVIKN 790

Query: 181  LPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEF 240
            LPKLEG+IH LPE+AYAGDLRHLVLEL+NQS+FSVKNLKMK+S+PRF+SIGN +D+  E 
Sbjct: 791  LPKLEGIIHSLPEKAYAGDLRHLVLELRNQSEFSVKNLKMKISNPRFMSIGNGEDLNCEI 850

Query: 241  PACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSIT 300
            P CL+K T  EQ     +  K    +F FPE ISI+ E PL WPLW RAAVPGKISL + 
Sbjct: 851  PECLEKKTEFEQISVPADSKKELHDIFVFPEDISIEREKPLSWPLWLRAAVPGKISLYMV 910

Query: 301  IYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENF 360
            +YYEMGD SS+++YR LRM Y+L+VLPSL++SF ISP  SRLQ++LVRMD+VN+TSSE+F
Sbjct: 911  VYYEMGDASSIMRYRTLRMQYDLQVLPSLDLSFAISPCPSRLQEFLVRMDLVNKTSSESF 970

Query: 361  QIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRGESSTSSDDTSSPSRL 420
            Q++QLS VGHQWEISLLQP D+IFPS+SL AGQA SCFFMLK+R +S  + +   S SR 
Sbjct: 971  QVNQLSCVGHQWEISLLQPPDAIFPSQSLIAGQAFSCFFMLKSRRKSLGTGEKILSLSRF 1030

Query: 421  LGSDVSL--QGTADTLFDISGSPLADFHAHERLLQRVS-QDDTNTVDFIFISQPSKSDSD 477
             GSDV L  + + +TLFDIS SPLADFH +ERL    S Q+  NTVD I IS+P KSD+ 
Sbjct: 1031 PGSDVRLTPEDSKNTLFDISSSPLADFHDYERLQHETSNQESVNTVDLILISRPLKSDNA 1090

Query: 478  SGISDPQHLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAM 537
            +GIS+P HLFSHHACHCS    +PI+W+VDGPR   H F+ASFCEVNL+M +YNSSDA  
Sbjct: 1091 TGISNPPHLFSHHACHCSTASTSPISWIVDGPRFRRHKFSASFCEVNLRMLVYNSSDAVA 1150

Query: 538  FVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLL 597
             V +NT DS S +GQ S+A    SAV S NQ GWH + +  DIK+ S +P   V R    
Sbjct: 1151 SVAINTLDSTSGNGQLSDA----SAVTSRNQTGWHHLSLENDIKIISDVPETNVARLQSP 1206

Query: 598  ESVSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSNYALNWKLLTISGQGN 654
            ESVSPFIWSGSS++ ++L+P+S+T+I +++C+FSPGTYDLSNY LNW L  ++ +GN
Sbjct: 1207 ESVSPFIWSGSSSTRIQLEPLSSTEIPLQICVFSPGTYDLSNYVLNWNLQPVNNEGN 1263

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|296089365\|emb\|CBI39137.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359481103\|ref\|XP_002263641.2\| PREDICTED: trafficking protein particle complex subunit 8-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356503854\|ref\|XP_003520717.1\| PREDICTED: trafficking protein particle complex subunit 8-like [Glycine max]	Back alignment and taxonomy information

>gi\|449437874\|ref\|XP_004136715.1\| PREDICTED: trafficking protein particle complex subunit 8-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356572633\|ref\|XP_003554472.1\| PREDICTED: trafficking protein particle complex subunit 8-like isoform 3 [Glycine max]	Back alignment and taxonomy information

>gi\|356572629\|ref\|XP_003554470.1\| PREDICTED: trafficking protein particle complex subunit 8-like isoform 1 [Glycine max]	Back alignment and taxonomy information

>gi\|356572631\|ref\|XP_003554471.1\| PREDICTED: trafficking protein particle complex subunit 8-like isoform 2 [Glycine max]	Back alignment and taxonomy information

>gi\|297811763\|ref\|XP_002873765.1\| binding protein [Arabidopsis lyrata subsp. lyrata] gi\|297319602\|gb\|EFH50024.1\| binding protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|334187712\|ref\|NP_001190319.1\| uncharacterized protein [Arabidopsis thaliana] gi\|332004886\|gb\|AED92269.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		678
FB\|FBgn0260655		1319	l(3)76BDm "lethal (3) 76BDm" [	0.525	0.269	0.236	8.2e-14
UNIPROTKB\|Q9Y2L5		1435	TRAPPC8 "Trafficking protein p	0.296	0.140	0.203	4.5e-07

FB\|FBgn0260655 l(3)76BDm "lethal (3) 76BDm" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

 Score = 217 (81.4 bits), Expect = 8.2e-14, P = 8.2e-14
 Identities = 90/380 (23%), Positives = 169/380 (44%)

Query:    26 ESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEES 85
             E+ + V GEP+++ +   N +Q  I++S I L+ +L+  +DE+ S  N+ T E  +D  +
Sbjct:   747 ETPVAVQGEPIELAVTLSNSVQCRIALSEIDLLWKLTLDNDEVLS--NACTYEESSDSAN 804

Query:    86 KLLTTTGEMNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSG---- 141
             K+        S  +S  L+E        ET+  +L  TPK+ G L I+GV  R++     
Sbjct:   805 KIAVGAAIKTSCMASIKLAEQ-----AEETLHFKL--TPKLTGRLSILGVVCRVAAGADP 857

Query:   142 --SLVGVYNFESNLXXXXXXXXXXXXXSSPSNDLKFIVIKSLPKLEGLIHPLPERAYAGD 199
               SL+G   FE+                   N L   ++  LP +     P+P R  AG+
Sbjct:   858 AASLLGTLQFETQKIRPHNAKQSSQTVMD--NRLTIKLVPQLPAMNVSFTPVPNRLLAGE 915

Query:   200 LRHLVLELKNQSDFSVKNLKMKVSHPRFLSI-GNRDDMTKEFPACLQKMTNAEQSVAGGN 258
             +  + + L+N     ++ + +   +PR +S+      M     + L+ ++N ++ V    
Sbjct:   916 IVPVHVTLRNMGIAPIEEIYLGCDNPRCVSLLDQHSQMPLAMMSSLRNLSN-DKLVKDKE 974

Query:   259 FN-KMPQAVFSFPEGISIQGETPLLWPLWYRAA-VPGKISLSITIYYEMGDVS-SVIKYR 315
                +    + + P   ++  +      LW +A    G  +L +  YY +  V+ S IKYR
Sbjct:   975 IRGQRVYRLLNRPGLAALDAQQVQTISLWVQAPHQAGPFTLRLLFYYSLPTVANSPIKYR 1034

Query:   316 LLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVG-HQWEI 374
             L+R  + L+V   L         ++   +  + ++V NQ + E  +++ ++S+  +  E 
Sbjct:  1035 LVRHIWQLQVESCLQADSTCVVSNAVTNELGLDVNVRNQHAVEGTEVY-INSISLYSTEF 1093

Query:   375 SLLQPFDSIFPSESLFAGQA 394
              L      I  S  +  GQA
Sbjct:  1094 KLNPDRLHIMNSMGVSPGQA 1113

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB\|Q9Y2L5 TRAPPC8 "Trafficking protein particle complex subunit 8" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		678
pfam08626		1183	pfam08626, TRAPPC9-Trs120, Transport protein Trs12	3e-04

>gnl\|CDD\|219942 pfam08626, TRAPPC9-Trs120, Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit	Back alignment and domain information

 Score = 44.0 bits (103), Expect = 3e-04
 Identities = 50/305 (16%), Positives = 99/305 (32%), Gaps = 37/305 (12%)

Query: 31  VAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTT 90
           V G+ V+V +  +NP    + + +I L+ E        E  S  ++  L+     + +T 
Sbjct: 648 VVGDVVEVSVTLQNPFSFEVEVEDIHLVTEGV------EFRSIPASLFLKAPTSMEPVTL 701

Query: 91  TGEMNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFE 150
           +G   S     T++  D+ + G ET  + ++        LK++                 
Sbjct: 702 SGLPLS-VGELTINGFDVKVFGVETQFLFIIDPELKHVALKVL----------------- 743

Query: 151 SNLVKKKIAKGRRKVKSSPSNDLKFIVIKSLPKLEGLIHPLPERA---YAGDLRHLVLEL 207
                   ++  + V++  S  L   VI   P+L  L+  +   +     G+ R   + L
Sbjct: 744 -LESVNAESRLDKTVQNLESESLTVEVIPPQPRLSLLVISMTNGSIMLLEGEKRQFTITL 802

Query: 208 KNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVF 267
           +N S   +  L +           N + + K      + +T  +          +     
Sbjct: 803 ENASSVPINYLSVT------FWDSNIEHLNK--ALHSKLLTADDLYELEFLLLWLKPFRI 854

Query: 268 SFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEM-GDVSSVIKYRLLRMHYNLEVL 326
                I           L             I + Y       S    R L +  N+ V+
Sbjct: 855 LNKPPIQPGEVVTFDIELDGARPPLHMKESGIILEYGHSEPDHSEFYMRRLSIPLNVSVM 914

Query: 327 PSLNV 331
           PS+ +
Sbjct: 915 PSIEL 919

This region is found at the N terminal of Saccharomyces cerevisiae Trs120 protein. Trs120 is a subunit of the multiprotein complex TRAPP (transport particle protein) which functions in ER to Golgi traffic. Trs120 is specific to the larger TRAPP complex, TRAPP II, along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way. It is likely that there is a complex function for TRAPP II in multiple pathways. Length = 1183

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		678
KOG1938		960	consensus Protein with predicted involvement in me	100.0
PF08626		1185	TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC	99.96
KOG1953		1235	consensus Targeting complex (TRAPP) subunit [Intra	99.56
PF07919		554	Gryzun: Gryzun, putative trafficking through Golgi	99.15
PF06159		249	DUF974: Protein of unknown function (DUF974); Inte	97.69
COG1470		513	Predicted membrane protein [Function unknown]	97.2
PF00927		107	Transglut_C: Transglutaminase family, C-terminal i	96.22
PF10633		78	NPCBM_assoc: NPCBM-associated, NEW3 domain of alph	95.55
PF07705		101	CARDB: CARDB; InterPro: IPR011635 The APHP (acidic	95.34
PF14874		102	PapD-like: Flagellar-associated PapD-like	95.14
KOG2625		348	consensus Uncharacterized conserved protein [Funct	94.83
PF05753		181	TRAP_beta: Translocon-associated protein beta (TRA	87.96
PF01345		76	DUF11: Domain of unknown function DUF11; InterPro:	86.36
PF00635		109	Motile_Sperm: MSP (Major sperm protein) domain; In	85.33

>KOG1938 consensus Protein with predicted involvement in meiosis (GSG1) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

Probab=100.00  E-value=1.5e-38  Score=362.78  Aligned_cols=475  Identities=20%  Similarity=0.201  Sum_probs=320.7

Q ss_pred             ccccccccccccccc-cccccccceeEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCccccccccc
Q 005768            6 STARSNWLELQSKLI-MKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEE   84 (678)
Q Consensus         6 ~~~~~~wl~~~~~~~-~~~~~~~~~~vvgEpi~V~V~L~NPL~ipL~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~   84 (678)
                      .+|..+|...+-..- .....+.+++|+||++++.|++||||++++.+++++|+|+|..++....+|++.. ..      
T Consensus       468 ~~~~~p~~~~ql~~~~~~~~~~~~v~v~Ge~~~l~v~~rnpl~~~~alT~~~ll~kl~~~~~s~~~Na~s~-~~------  540 (960)
T KOG1938|consen  468 FAGSQPFRPSQLLLAEFSDKFKNPVPVAGEPIKLSVTLRNPLKISIALTNSSLLWKLHLDNLSGSSNAYSH-SQ------  540 (960)
T ss_pred             hcccCCCcchhcccchhccccccccccCCcceeeEEeecCccceeccccchhhhhhccccccccccccccc-cc------
Confidence            344455555554443 3444579999999999999999999999999999999999998543333333321 00      


Q ss_pred             ccccccccccCCCCCceeeeeeeEEEcCCceEEEEEEEEeCceEEEEEEEEEEEE------ceeeeeEEeeeeccccccc
Q 005768           85 SKLLTTTGEMNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRL------SGSLVGVYNFESNLVKKKI  158 (678)
Q Consensus        85 ~~~~~~~~~~~~~~~~f~~~~~~i~L~p~Etk~V~L~v~P~~~G~L~I~Gv~~~L------~~~v~g~~~fe~kg~RL~~  158 (678)
                       ..|+.+     +   . ....++.+.+.|+.++.|+.+|+..|.|+|.|..|+.      .+.+.|...|+++|+|++.
T Consensus       541 -~~Pe~~-----~---~-s~~~~~~~~~~e~~t~~L~dfp~~~g~lkii~~v~~~~~~~vd~as~yg~~~le~qgirl~~  610 (960)
T KOG1938|consen  541 -SSPELI-----D---D-SAFPELLKSGEEDFTFMLRDFPRAIGILKIIRNVVNPLIEDVDAASVYGACSLEIQGIRLNN  610 (960)
T ss_pred             -cChhhh-----h---h-hhHHHHHhcchhceeeeeeeccccceEEeeeeccccchhcccchhhhhcccchhhhhcchhh
Confidence             111000     0   0 1136899999999999999999999999999999999      5689999999999999999


Q ss_pred             cccc-ccccCCCCCceEEEEEcCCCeEEEEEecCCccccCccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCC
Q 005768          159 AKGR-RKVKSSPSNDLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMT  237 (678)
Q Consensus       159 tk~r-~~~~y~pD~rL~~~Vi~~~P~L~v~~~~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~  237 (678)
                      ++.+ +..+|.+|.||.+.+.+.+|+|+++|+++|+.+||||+|++.|+++|.|.+|+.+|++++++|+| .  ..+.  
T Consensus       611 ~~~~~~s~~~t~d~RL~~~~~e~lp~levs~~s~P~~lyagq~r~~~le~~nls~~P~~~v~~a~s~~~~-~--~l~n--  685 (960)
T KOG1938|consen  611 TKLDVTSSKLTNDTRLNILASEMLPLLEVSFTSFPQWLYAGQAREVLLELRNLSPCPAISVDLAASWPYF-A--VLEN--  685 (960)
T ss_pred             hcccccccccChHHHHHHHHHhhhhhhheeeecCcchHHHHHHHHHHHHhhhcCCCchhhHHHHhcChhh-h--hccc--
Confidence            9974 48899999999998889999999999999999999999999999999999999999999999977 1  1111  


Q ss_pred             ccchhhhhccccccccccCCCCCCCCcceeecCCCcccCCCCeEEEEEEEEeCCCCeEEEEEEEEeeeCCCCccceEEEE
Q 005768          238 KEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLL  317 (678)
Q Consensus       238 ~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~~L~pGes~~~plwlrap~~G~~~l~~LfyYe~~~~~~~~~~R~l  317 (678)
                       .++.++..+. .++..   -...+-...+.++++..|.+|+++++++|+|++..+.     -           ..+|  
T Consensus       686 -~s~~~~~~~~-a~i~~---~~t~r~~~~s~~~~d~~l~g~r~rr~alW~r~~a~~~-----~-----------~w~r--  742 (960)
T KOG1938|consen  686 -ESHRKGKMNA-ANISQ---QETTRFESGSGSDEDIVLDGGRRRRAALWFRLSAEAS-----K-----------PWLR--  742 (960)
T ss_pred             -ccccccccCH-hhhhh---hhhhhhccccCCCcccccCCCceeeeeeeEecccccc-----c-----------chHH--
Confidence             1122222210 01100   0000111222334678999999999999999985440     1           1122  


Q ss_pred             EEEEEEEEeceeEEEEEEeecccccceEEEEEEEEeCCCCCcEEEEEEEeeeeceEEeeeCCCcccCCCcccCccceeeE
Q 005768          318 RMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSC  397 (678)
Q Consensus       318 R~~~~v~V~pSL~vs~~~~~s~s~~~~~~l~v~V~N~~~~~~~~l~Qvs~vS~~W~i~~l~~~~si~~~~~l~p~q~~~~  397 (678)
                                       +.+++.       .+...|.....-..+++++.....|.....+.-....++.....++.+++
T Consensus       743 -----------------~~~~r~-------~~~~~n~a~~~y~~i~~~~~s~~~l~~~~~~~e~~dvpsa~~~~~~~ls~  798 (960)
T KOG1938|consen  743 -----------------QRQWRR-------ASWCLNTAKSTYSKIHWLSLSECILSKSLNLSENTDVPSAFTPSGKNLSR  798 (960)
T ss_pred             -----------------hhhhhh-------hhhhhhccccceeeeeeeehhhhhhhhhccchhhccCccccCccccccce
Confidence                             111111       34444444445577788888877788887776666666777778999999


Q ss_pred             EEEEeecCCCCCCCCCCCCCCcccccceeecCCCCccccccCCcchhhhhhhhhcc---cc-ccCCCCceeEEEEecccc
Q 005768          398 FFMLKNRGESSTSSDDTSSPSRLLGSDVSLQGTADTLFDISGSPLADFHAHERLLQ---RV-SQDDTNTVDFIFISQPSK  473 (678)
Q Consensus       398 ~f~~~~~~~~~~~~~~~~s~~~~~~sdv~l~~~~~~~~~~s~~P~~df~~~~r~~~---~~-~~~~~~~l~liv~W~a~~  473 (678)
                      +++...++..+.++|..      ..       +  .++..+..++++|+......-   .. .+..++  +|+++|+|++
T Consensus       799 ~~~~~~~~~~~~e~e~~------i~-------~--~~~~~s~~~~~~~~~~~st~~~~~~~~~~~~~~--~i~~~w~a~v  861 (960)
T KOG1938|consen  799 TSVSFIGRAVEIESEQP------IV-------A--RLVPLSQGETIKFFWLTSTTEVTPPAEIQSTMD--TIVILWKANV  861 (960)
T ss_pred             eeeccccccccccccCC------cc-------c--ceeeccCCcchhhhhhccccccCCChhhccChh--hHHHhccccc
Confidence            99988888776554442      11       2  244556666777774422111   00 112333  3889999999


Q ss_pred             cCCCCCCCCCccccceeecccc--ccCCCce--EEEE-eCCCeeeccCCC-CceeEeEEEEEEecCCceEEEEEEecCCC
Q 005768          474 SDSDSGISDPQHLFSHHACHCS--ILGKTPI--TWLV-DGPRTLHHNFNA-SFCEVNLKMTIYNSSDAAMFVRVNTFDSP  547 (678)
Q Consensus       474 ~~~~~~~~~~~~~Gq~h~~~~~--~~~~~pi--~~~l-~~p~~i~HdFs~-~~C~vpV~l~l~N~s~~~~~v~i~~~~~~  547 (678)
                      ++|++.  . ..+| +.+-+.-  ....+++  +.++ .-...|.|  ++ .+|++|+++.++||+.+...|.+.+.   
T Consensus       862 v~~eg~--~-~~~g-~~~~l~~~f~~~~~~~~~~~s~~~~~~~i~~--t~~~~~~~p~t~~~~n~~~~~~~v~~~~~---  932 (960)
T KOG1938|consen  862 VNDEGV--T-RFIG-PFVKLKKLFKTDSCLSSLRISCETTSKEISH--TADHLCELPITLLISNNDLAWRPVSVSIE---  932 (960)
T ss_pred             ccccce--e-eecC-CcceehhhccCCcccccchhhhhhhhhhcch--hhhhhhcccchhhhcCCcccccccchhhh---
Confidence            999742  2 4455 2221110  0011222  2222 22344555  44 66666666666666665555555431   


Q ss_pred             CCCCCCccccCCCCCCCCCCCCCcccccccccceecccCCcccccccccccccCceEEeccccceEEeCCCceeEEEeEE
Q 005768          548 SSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSGSSASSVRLQPMSTTDIAMKV  627 (678)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~w~g~~~~~~~l~p~~~~~i~l~~  627 (678)
                                                      -                      -.|.|+++||.|+++++.+.++|+|
T Consensus       933 --------------------------------~----------------------~~w~~~~~~k~q~~~~~~~~~~m~~  958 (960)
T KOG1938|consen  933 --------------------------------E----------------------SSWIGRPVYKQQIGILEEASLEMKW  958 (960)
T ss_pred             --------------------------------h----------------------hcccCCcceeeeecccccceeeeEe
Confidence                                            0                      0199999999999999999999999


Q ss_pred             EE
Q 005768          628 CL  629 (678)
Q Consensus       628 ~~  629 (678)
                      ||
T Consensus       959 ~~  960 (960)
T KOG1938|consen  959 KI  960 (960)
T ss_pred             cC
Confidence            86

>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway	Back alignment and domain information

>KOG1953 consensus Targeting complex (TRAPP) subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF07919 Gryzun: Gryzun, putative trafficking through Golgi; InterPro: IPR012880 The proteins featured in this family are all hypothetical eukaryotic proteins of unknown function	Back alignment and domain information

>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins	Back alignment and domain information

>COG1470 Predicted membrane protein [Function unknown]	Back alignment and domain information

>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds	Back alignment and domain information

>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known	Back alignment and domain information

>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins	Back alignment and domain information

>PF14874 PapD-like: Flagellar-associated PapD-like	Back alignment and domain information

>KOG2625 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins	Back alignment and domain information

>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes	Back alignment and domain information

>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		678
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 50.2 bits (119), Expect = 2e-06
 Identities = 72/509 (14%), Positives = 161/509 (31%), Gaps = 124/509 (24%)

Query: 9   RSNWLELQS-KLI----MKKFEESNICVAGEPVK-VDIEFKNPLQIP-ISISN------- 54
           R   LEL+  K +    +    ++   VA +      ++ K   +I  +++ N       
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKT--WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198

Query: 55  ISLICELSTRSDEM---ESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEV-DISL 110
           + ++ +L  + D      SD +S+     +  +++L         +     L  V +   
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258

Query: 111 GGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVKKKIAKGRRKVKSSPS 170
             A  +  ++++T + + +   +        SL    +    L   +             
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD---HHSMTLTPDE------------V 303

Query: 171 NDL--KFIVIK--SLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPR 226
             L  K++  +   LP+     +P      A  +R    +     D        K++   
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR----DGLATWDNWKHVNCDKLTTII 359

Query: 227 FLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLW 286
             S+   +      PA  +KM           F+++  +V  FP    I   T LL  +W
Sbjct: 360 ESSLNVLE------PAEYRKM-----------FDRL--SV--FPPSAHI--PTILLSLIW 396

Query: 287 YRAAVPGKISLSITIYYEMGD-VSSVIKYRLLRMHYNLEV--LPSLNVSFQISPWSSRLQ 343
           +             I  ++   V+ + KY L+          +PS+ +  ++        
Sbjct: 397 FD-----------VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV----KLEN 441

Query: 344 QYLVRMDVVNQ-TSSENFQIHQLSS----------VG-HQWEISLLQPFDSIFPSESLFA 391
           +Y +   +V+     + F    L            +G H   I   +    +F    +F 
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT-LFR--MVF- 497

Query: 392 GQALSCFFM---LKNRGESSTSSDDTSSPSRLLGSDVSLQGT----ADTLFDISGSPLAD 444
              L   F+   +++     T+ + + S    L   +          D  ++   + + D
Sbjct: 498 ---LDFRFLEQKIRHDS---TAWNASGSILNTL-QQLKFYKPYICDNDPKYERLVNAILD 550

Query: 445 F----------HAHERLLQRVSQDDTNTV 463
           F            +  LL+     +   +
Sbjct: 551 FLPKIEENLICSKYTDLLRIALMAEDEAI 579

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		678
2qsv_A		220	Uncharacterized protein; MCSG, structural genomics	96.05
1vjj_A		692	Protein-glutamine glutamyltransferase E; transglut	94.83
2q3z_A		687	Transglutaminase 2; transglutaminase 2, tissue tra	94.26
3idu_A		127	Uncharacterized protein; all beta-protein, structu	94.07
2xzz_A		102	Protein-glutamine gamma-glutamyltransferase K; 2.3	93.9
1g0d_A		695	Protein-glutamine gamma-glutamyltransferase; tissu	93.59
1ex0_A		731	Coagulation factor XIII A chain; transglutaminase,	92.72
1g0d_A		695	Protein-glutamine gamma-glutamyltransferase; tissu	91.83
1ex0_A		731	Coagulation factor XIII A chain; transglutaminase,	90.71
2q3z_A		687	Transglutaminase 2; transglutaminase 2, tissue tra	89.65
1vjj_A		692	Protein-glutamine glutamyltransferase E; transglut	88.11
3isy_A		120	Bsupi, intracellular proteinase inhibitor; intrace	86.88
2l0d_A		114	Cell surface protein; structural genomics, northea	86.75
1row_A		109	SSP-19, MSP-domain protein like family member; bet	86.51
1m1s_A		116	WR4; structural genomics, major sperm protein, bio	84.76
2ys4_A		122	Hydrocephalus-inducing protein homolog; hydin, PAP	84.47
2e6j_A		112	Hydin protein; PAPD, structural genomics, NPPSFA,	83.89
2e6j_A		112	Hydin protein; PAPD, structural genomics, NPPSFA,	83.25

>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}	Back alignment and structure

Probab=96.05  E-value=0.16  Score=50.29  Aligned_cols=180  Identities=14%  Similarity=0.113  Sum_probs=111.4

Q ss_pred             cccccccceeEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCc
Q 005768           21 MKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSS  100 (678)
Q Consensus        21 ~~~~~~~~~~vvgEpi~V~V~L~NPL~ipL~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (678)
                      +...-++..+.+|++....+.++|.=+-||.++.++|     +.  .                                 
T Consensus         6 ~~~~idFg~v~~g~~~~~~~~i~N~g~~pl~i~~~~~-----p~--~---------------------------------   45 (220)
T 2qsv_A            6 SNARLLFPISMPEDEGVVRLVVNNTDESDLQVAVVSL-----PS--F---------------------------------   45 (220)
T ss_dssp             SCSEEECCSBCTTCCCEEEEEEEECSSSCEEEEEEEC-----CT--T---------------------------------
T ss_pred             ecCeeEcccccCCCcceEEEEEEeCCCCceEEEeccC-----CC--c---------------------------------
Confidence            3556778888999999999999999999999998765     11  0                                 


Q ss_pred             eeeeeeeEEEcCCceEEEEEEEEeCce---EEEEEEEEEEEEc----eeeeeEEeeeecccccccccccccccCCCCCce
Q 005768          101 FTLSEVDISLGGAETILVQLMVTPKVE---GILKIVGVRWRLS----GSLVGVYNFESNLVKKKIAKGRRKVKSSPSNDL  173 (678)
Q Consensus       101 f~~~~~~i~L~p~Etk~V~L~v~P~~~---G~L~I~Gv~~~L~----~~v~g~~~fe~kg~RL~~tk~r~~~~y~pD~rL  173 (678)
                      +.+....-.|+|+++-.|.++.-++.-   |..+=. +.....    +... ...+.+.                     
T Consensus        46 ~~~~~~~~~I~PG~~g~I~vt~~~~~~~~~G~~~~~-i~v~~~~~~~~~~~-~~~i~v~---------------------  102 (220)
T 2qsv_A           46 VSLDDRAFRLQAREPRELNLSLAVPRNMPPGMKDEP-LVLEVTSPETGKKA-VDSVMVS---------------------  102 (220)
T ss_dssp             EECSCCEEEECSSSCEEEEEEECCCTTCCSEEEEEE-EEEEEECTTTCCEE-EEEEEEE---------------------
T ss_pred             eEeeeCcceeCCCCceEEEEEEcchhcccCCceeeE-EEEEEEcCCCCccc-ccEEEEE---------------------
Confidence            011124678899999999988887764   432210 111111    1110 1122221                     


Q ss_pred             EEEEEc--------CCCeEEEEEecCCccccCccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhh
Q 005768          174 KFIVIK--------SLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQ  245 (678)
Q Consensus       174 ~~~Vi~--------~~P~L~v~~~~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~  245 (678)
                       ..+.+        .+|.+++. ..+...-+.|+.....++|+|.|..||.=-.+.++.. ++                 
T Consensus       103 -g~v~p~~~~~~~~~~~~i~~~-~~~dfG~i~g~~~~~~f~i~N~G~~pL~I~~v~~scg-ct-----------------  162 (220)
T 2qsv_A          103 -LPLVDNFPALTAAQTGVMELS-TYLDMGQLDGETTKAAIEIRNVGAGPLRLHSVTTRNP-AL-----------------  162 (220)
T ss_dssp             -EEECCCGGGCCGGGCCCEECC-CEEEEEECTTSCEEEEEEEEECSSSCEEEEEEEECST-TE-----------------
T ss_pred             -EEEcccchhhhhccCCEEEEE-eEEeeeccCCCeEEEEEEEEECCCCCEEEEEEEeCCC-CE-----------------
Confidence             22222        35555554 3333322228999999999999999987555544332 11                 


Q ss_pred             ccccccccccCCCCCCCCcceeecCCCcccCCCCeEEEEEEEEeCCC-Ce----EEEEEEEEee
Q 005768          246 KMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVP-GK----ISLSITIYYE  304 (678)
Q Consensus       246 ~~~~~e~~~~~~~~~~~~~~v~~lp~~~~L~pGes~~~plwlrap~~-G~----~~l~~LfyYe  304 (678)
                                          ...++ ...|+||++.++.+.+.+... |.    ..-.+.+|--
T Consensus       163 --------------------~~~~~-~~~i~PGe~~~i~v~~~~~~~~g~~~~~~~~~i~v~~N  205 (220)
T 2qsv_A          163 --------------------TAVPD-RTEIKPGGSTLLRIAVDPQVMKAEGWQSIAADISIICN  205 (220)
T ss_dssp             --------------------EEEES-CSEECTTCEEEEEEEECHHHHHHTTCSEEEEEEEEEES
T ss_pred             --------------------eeecC-CccCCCCCEEEEEEEEecCCCCCcccceeccEEEEEEC
Confidence                                11122 347899999999999998633 77    6666666553

PyMOL of 2qsv

>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*	Back alignment and structure

>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*	Back alignment and structure

>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A	Back alignment and structure

>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}	Back alignment and structure

>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4	Back alignment and structure

>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A	Back alignment and structure

>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4	Back alignment and structure

>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A	Back alignment and structure

>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*	Back alignment and structure

>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*	Back alignment and structure

>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}	Back alignment and structure

>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}	Back alignment and structure

>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2	Back alignment and structure

>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2	Back alignment and structure

>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		678
d1g0da3		101	Transglutaminase, two C-terminal domains {Red sea	96.69
d1ex0a3		100	Transglutaminase, two C-terminal domains {Human (H	96.63
d2q3za3		98	Transglutaminase, two C-terminal domains {Human (H	95.98
d1vjja3		99	Transglutaminase, two C-terminal domains {Human (H	95.85
d1w8oa1		103	Sialidase, "linker" domain {Micromonospora viridif	92.22
d1vjja3		99	Transglutaminase, two C-terminal domains {Human (H	87.19
d2q3za3		98	Transglutaminase, two C-terminal domains {Human (H	83.36
d1m1sa_		109	WR4 {Nematode (Caenorhabditis elegans) [TaxId: 623	80.33

>d1g0da3 b.1.5.1 (A:584-684) Transglutaminase, two C-terminal domains {Red sea bream (Chrysophrys major) [TaxId: 143350]}	Back information, alignment and structure

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Transglutaminase, two C-terminal domains
family: Transglutaminase, two C-terminal domains
domain: Transglutaminase, two C-terminal domains
species: Red sea bream (Chrysophrys major) [TaxId: 143350]

Probab=96.69  E-value=0.005  Score=52.08  Aligned_cols=91  Identities=18%  Similarity=0.204  Sum_probs=57.5

Q ss_pred             cccceeEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeee
Q 005768           25 EESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLS  104 (678)
Q Consensus        25 ~~~~~~vvgEpi~V~V~L~NPL~ipL~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~  104 (678)
                      +-...+++|+++.++|+|+|||.++|.=--+++..    .  ..                 ..+              ..
T Consensus         7 ~v~g~~~v~~~~~v~vsf~NPL~~~L~~c~~~vEG----~--GL-----------------~~~--------------~~   49 (101)
T d1g0da3           7 QVPGKAVVWEPLTAYVSFTNPLPVPLKGGVFTLEG----A--GL-----------------LSA--------------TQ   49 (101)
T ss_dssp             ECCSCEETTCCEEEEEEEECCSSSCEESCEEEEEE----T--TT-----------------EEE--------------EE
T ss_pred             EeCCCcCcCCeEEEEEEEECCCCCeecCEEEEEEc----C--CC-----------------Ccc--------------cE
Confidence            33455889999999999999999987633333331    1  00                 000              00


Q ss_pred             ee-eEEEcCCceEEEEEEEEeCceEEEEEEEE-EEEEceeeeeEEeeeec
Q 005768          105 EV-DISLGGAETILVQLMVTPKVEGILKIVGV-RWRLSGSLVGVYNFESN  152 (678)
Q Consensus       105 ~~-~i~L~p~Etk~V~L~v~P~~~G~L~I~Gv-~~~L~~~v~g~~~fe~k  152 (678)
                      .. .=.++|+|+-++++.++|++.|.-+|..- ..+-...+.|...+.++
T Consensus        50 ~~~~~~v~p~~~~~~~~~~~P~~~G~~~L~a~f~s~~l~~v~G~~~v~V~   99 (101)
T d1g0da3          50 IHVNGAVAPSGKVSVKLSFSPMRTGVRKLLVDFDSDRLKDVKGVTTVVVH   99 (101)
T ss_dssp             EECSSEECTTCEEEEEEEECCSSCEEEEEEEEEECSSCCCEEEEEEEEEE
T ss_pred             EEecCCcCCCCEEEEEEEEEcCCcccEEEEEEEeCchhcCceeEEEEEEE
Confidence            11 22689999999999999999998776421 11111246666655543

PyMOL of d1g0da3

>d1ex0a3 b.1.5.1 (A:628-727) Transglutaminase, two C-terminal domains {Human (Homo sapiens), blood isozyme [TaxId: 9606]}	Back information, alignment and structure

>d2q3za3 b.1.5.1 (A:586-683) Transglutaminase, two C-terminal domains {Human (Homo sapiens), tissue isozyme [TaxId: 9606]}	Back information, alignment and structure

>d1vjja3 b.1.5.1 (A:594-692) Transglutaminase, two C-terminal domains {Human (Homo sapiens), TGase E3 [TaxId: 9606]}	Back information, alignment and structure

>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]}	Back information, alignment and structure

>d1vjja3 b.1.5.1 (A:594-692) Transglutaminase, two C-terminal domains {Human (Homo sapiens), TGase E3 [TaxId: 9606]}	Back information, alignment and structure

>d2q3za3 b.1.5.1 (A:586-683) Transglutaminase, two C-terminal domains {Human (Homo sapiens), tissue isozyme [TaxId: 9606]}	Back information, alignment and structure

>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure