Citrus Sinensis ID: 005789
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 677 | 2.2.26 [Sep-21-2011] | |||||||
| Q9JK91 | 760 | DNA mismatch repair prote | yes | no | 0.601 | 0.535 | 0.475 | 1e-108 | |
| P40692 | 756 | DNA mismatch repair prote | yes | no | 0.580 | 0.519 | 0.488 | 1e-108 | |
| P97679 | 757 | DNA mismatch repair prote | yes | no | 0.571 | 0.511 | 0.478 | 1e-105 | |
| Q9P7W6 | 684 | Putative MutL protein hom | yes | no | 0.877 | 0.868 | 0.346 | 1e-94 | |
| P38920 | 769 | DNA mismatch repair prote | yes | no | 0.562 | 0.495 | 0.443 | 4e-91 | |
| Q54KD8 | 884 | DNA mismatch repair prote | yes | no | 0.511 | 0.391 | 0.426 | 7e-86 | |
| B8CX97 | 644 | DNA mismatch repair prote | yes | no | 0.548 | 0.576 | 0.368 | 4e-60 | |
| B9DPC0 | 646 | DNA mismatch repair prote | yes | no | 0.666 | 0.698 | 0.321 | 2e-55 | |
| B2TIB8 | 672 | DNA mismatch repair prote | yes | no | 0.478 | 0.482 | 0.369 | 2e-54 | |
| Q1WT16 | 659 | DNA mismatch repair prote | yes | no | 0.481 | 0.494 | 0.376 | 4e-54 |
| >sp|Q9JK91|MLH1_MOUSE DNA mismatch repair protein Mlh1 OS=Mus musculus GN=Mlh1 PE=2 SV=2 | Back alignment and function desciption |
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Score = 392 bits (1008), Expect = e-108, Method: Compositional matrix adjust.
Identities = 200/421 (47%), Positives = 290/421 (68%), Gaps = 14/421 (3%)
Query: 22 IHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHG 81
I RL+E+VVNRIAAGEVIQRP +A+KE++EN LDA +T+I VVVK+GGLKLIQ+ D+G G
Sbjct: 8 IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTNIQVVVKEGGLKLIQIQDNGTG 67
Query: 82 IRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYR 141
IR EDL I+CER TTSKL +EDL SI + GFRGEALAS+++V HVT+TT T YR
Sbjct: 68 IRKEDLDIVCERFTTSKLQTFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYR 127
Query: 142 VSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHH 201
SY DG +++ PK CA +GT I VE+LFYN+I RRK L+N S++Y KI++++ R +IH+
Sbjct: 128 ASYSDGKLQAPPKPCAGNQGTLITVEDLFYNIITRRKALKNPSEEYGKILEVVGRYSIHN 187
Query: 202 TNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMD 261
+ +SFS +K G +DV ++ ++ +D+IR+++G +V+ L+++ + + FKM+
Sbjct: 188 SGISFSVKKQGETVSDVRTLPNATTVDNIRSIFGNAVSRELIEVGC----EDKTLAFKMN 243
Query: 262 GYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHV 321
GY+SN+NY KK +LF+N RLVE A L++A+E VYAA PK + PF+Y+S+ + P++V
Sbjct: 244 GYISNANYSVKKCIFLLFINHRLVESAALRKAIETVYAAYLPKNTHPFLYLSLEISPQNV 303
Query: 322 DVNVHPTKREVSLLNQELIVEKIQSAVELKLRQSNDSRTYKEQTVESSPSSPYN----PS 377
DVNVHPTK EV L++E I++++Q +E KL SN SR Y QT+ + P P+
Sbjct: 304 DVNVHPTKHEVHFLHEESILQRVQQHIESKLLGSNSSRMYFTQTLLPGLAGPSGEAARPT 363
Query: 378 KDLHLNPSGSKLQKVPVNKMVRTDSSDPAGRLHAYVQSKPHTSVASGPNLSAVRSSVRQR 437
+ + + KV +MVRTDS + +L A++Q P +S+ GP+ + VR
Sbjct: 364 TGVASSSTSGSGDKVYAYQMVRTDSREQ--KLDAFLQ--PVSSL--GPSQPQDPAPVRGA 417
Query: 438 R 438
R
Sbjct: 418 R 418
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Heterodimerizes with Pms2 to form MutL alpha, a component of the post-replicative DNA mismatch repair system (MMR). DNA repair is initiated by MutS alpha (Msh2-Msh6) or MutS beta (Msh2-Msh6) binding to a dsDNA mismatch, then MutL alpha is recruited to the heteroduplex. Assembly of the MutL-MutS-heteroduplex ternary complex in presence of RFC and PCNA is sufficient to activate endonuclease activity of Pms2. It introduces single-strand breaks near the mismatch and thus generates new entry points for the exonuclease EXO1 to degrade the strand containing the mismatch. DNA methylation would prevent cleavage and therefore assure that only the newly mutated DNA strand is going to be corrected. MutL alpha (Mlh1-Pms2) interacts physically with the clamp loader subunits of DNA polymerase III, suggesting that it may play a role to recruit the DNA polymerase III to the site of the MMR. Also implicated in DNA damage signaling, a process which induces cell cycle arrest and can lead to apoptosis in case of major DNA damages. Heterodimerizes with Mlh3 to form MutL gamma which plays a role in meiosis. Mus musculus (taxid: 10090) |
| >sp|P40692|MLH1_HUMAN DNA mismatch repair protein Mlh1 OS=Homo sapiens GN=MLH1 PE=1 SV=1 | Back alignment and function description |
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| >sp|P97679|MLH1_RAT DNA mismatch repair protein Mlh1 OS=Rattus norvegicus GN=Mlh1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9P7W6|MLH1_SCHPO Putative MutL protein homolog 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mlh1 PE=2 SV=1 | Back alignment and function description |
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| >sp|P38920|MLH1_YEAST DNA mismatch repair protein MLH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MLH1 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q54KD8|MLH1_DICDI DNA mismatch repair protein Mlh1 OS=Dictyostelium discoideum GN=mlh1 PE=3 SV=1 | Back alignment and function description |
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| >sp|B8CX97|MUTL_HALOH DNA mismatch repair protein MutL OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=mutL PE=3 SV=1 | Back alignment and function description |
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| >sp|B9DPC0|MUTL_STACT DNA mismatch repair protein MutL OS=Staphylococcus carnosus (strain TM300) GN=mutL PE=3 SV=1 | Back alignment and function description |
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| >sp|B2TIB8|MUTL_CLOBB DNA mismatch repair protein MutL OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=mutL PE=3 SV=1 | Back alignment and function description |
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| >sp|Q1WT16|MUTL_LACS1 DNA mismatch repair protein MutL OS=Lactobacillus salivarius (strain UCC118) GN=mutL PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 677 | ||||||
| 224146324 | 747 | predicted protein [Populus trichocarpa] | 0.949 | 0.860 | 0.799 | 0.0 | |
| 255561542 | 735 | DNA mismatch repair protein mlh1, putati | 0.927 | 0.854 | 0.800 | 0.0 | |
| 297813357 | 727 | hypothetical protein ARALYDRAFT_911184 [ | 0.952 | 0.887 | 0.768 | 0.0 | |
| 449522942 | 738 | PREDICTED: DNA mismatch repair protein M | 0.949 | 0.871 | 0.758 | 0.0 | |
| 449441546 | 738 | PREDICTED: DNA mismatch repair protein M | 0.949 | 0.871 | 0.758 | 0.0 | |
| 30680985 | 737 | DNA mismatch repair protein MLH1 [Arabid | 0.955 | 0.877 | 0.758 | 0.0 | |
| 13430732 | 727 | putative MLH1 protein [Arabidopsis thali | 0.952 | 0.887 | 0.761 | 0.0 | |
| 356507690 | 727 | PREDICTED: DNA mismatch repair protein M | 0.946 | 0.881 | 0.742 | 0.0 | |
| 357455563 | 764 | DNA mismatch repair protein Mlh1 [Medica | 0.937 | 0.831 | 0.692 | 0.0 | |
| 115442355 | 724 | Os01g0958900 [Oryza sativa Japonica Grou | 0.937 | 0.877 | 0.660 | 0.0 |
| >gi|224146324|ref|XP_002325965.1| predicted protein [Populus trichocarpa] gi|222862840|gb|EEF00347.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 1078 bits (2789), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 518/648 (79%), Positives = 583/648 (89%), Gaps = 5/648 (0%)
Query: 18 EPPKIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSD 77
EPPKIHRL+ESVVNRIAAGEVIQRPVSA+KELVENSLDA +TSINVVVKDGGLKLIQVSD
Sbjct: 30 EPPKIHRLDESVVNRIAAGEVIQRPVSAIKELVENSLDAHSTSINVVVKDGGLKLIQVSD 89
Query: 78 DGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHL 137
DGHGIR EDLPILCERHTTSKL+ YEDLQSIKSMGFRGEALASMTYVGHVTVTTIT G L
Sbjct: 90 DGHGIRREDLPILCERHTTSKLTNYEDLQSIKSMGFRGEALASMTYVGHVTVTTITPGKL 149
Query: 138 HGYRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRM 197
HG VSYRDGVME EPK CAAVKGTQIMVENLFYNMIARRKT QNSSDDY+KIVDLLSR
Sbjct: 150 HGSGVSYRDGVMEDEPKPCAAVKGTQIMVENLFYNMIARRKTFQNSSDDYSKIVDLLSRF 209
Query: 198 AIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFV 257
AIHH NVSFSCRKHGA+RADVHS+ TSSRLDSIR+VYGVSVA NL+++E + +D SS V
Sbjct: 210 AIHHINVSFSCRKHGASRADVHSVTTSSRLDSIRSVYGVSVALNLMKIEVPD-SDPSSSV 268
Query: 258 FKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLP 317
F MDG +SNSNYVAKKTTMVLF+NDRLVEC LKRA+EIVYAAT PKASKPFIYMSIVLP
Sbjct: 269 FNMDGLISNSNYVAKKTTMVLFINDRLVECTALKRAIEIVYAATLPKASKPFIYMSIVLP 328
Query: 318 PEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKLRQSNDSRTYKEQTVESSPSSPYNPS 377
PEHVDVNVHPTKREVSLLNQE I+ IQSAVE KLR SN++RT++EQT++SSPS +
Sbjct: 329 PEHVDVNVHPTKREVSLLNQEFIINTIQSAVESKLRNSNEARTFQEQTLDSSPSVTLSAK 388
Query: 378 KDLHLNPS----GSKLQKVPVNKMVRTDSSDPAGRLHAYVQSKPHTSVASGPNLSAVRSS 433
KD ++NPS GSK QKVPVNKMVRTD+SDPAGRLHAY+Q++P ++ +L+AVRSS
Sbjct: 389 KDSNVNPSPSPYGSKSQKVPVNKMVRTDASDPAGRLHAYLQARPVDNLEGNSSLAAVRSS 448
Query: 434 VRQRRNLNETADLTSIQELIDDVDRNCHSGLLDIVRHCSFIGMADDVYALLQHNTHMYLA 493
VRQRRN E+AD++S+QEL++D+D NCHSGLLDIVR+C++IGMADDV+ALLQ+ T +YLA
Sbjct: 449 VRQRRNPKESADISSVQELVNDIDGNCHSGLLDIVRNCTYIGMADDVFALLQYKTQLYLA 508
Query: 494 NVVSLSKELMYQLVLRRFAHFNAIQLSDPAPLSELLMLALKEEDLDVENSENDDLKEKIA 553
NVV+LSKELMYQ VLRRFAHFN IQLSDPAPL L+MLALKEEDLD+E++EN+DL+EKIA
Sbjct: 509 NVVNLSKELMYQQVLRRFAHFNVIQLSDPAPLRLLIMLALKEEDLDLESNENEDLREKIA 568
Query: 554 EMNTELLKQKAEMLEEYFCVKIDTRGNLSRLPIILDQYTPDMDRIPEFVLCLGNDVDWED 613
EMNTELLK KAE+LEEYFC+ ID+ GNLSRLP+ILDQYTPDMDRIPEFVL LGNDVDWED
Sbjct: 569 EMNTELLKDKAELLEEYFCIYIDSHGNLSRLPVILDQYTPDMDRIPEFVLSLGNDVDWED 628
Query: 614 EKCCFQAIAAALGNFYAMHPPLLPNPSGEGLQCYKKRKPLKNPVDIER 661
EK CFQ IAAA+GNFYA+HPPLLP+PSG+GLQ Y++RKP KNP D E+
Sbjct: 629 EKNCFQTIAAAVGNFYAIHPPLLPSPSGDGLQFYRRRKPEKNPDDKEK 676
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255561542|ref|XP_002521781.1| DNA mismatch repair protein mlh1, putative [Ricinus communis] gi|223538994|gb|EEF40591.1| DNA mismatch repair protein mlh1, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|297813357|ref|XP_002874562.1| hypothetical protein ARALYDRAFT_911184 [Arabidopsis lyrata subsp. lyrata] gi|297320399|gb|EFH50821.1| hypothetical protein ARALYDRAFT_911184 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|449522942|ref|XP_004168484.1| PREDICTED: DNA mismatch repair protein Mlh1-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449441546|ref|XP_004138543.1| PREDICTED: DNA mismatch repair protein Mlh1-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|30680985|ref|NP_567345.2| DNA mismatch repair protein MLH1 [Arabidopsis thaliana] gi|3893081|emb|CAA10163.1| MLH1 protein [Arabidopsis thaliana] gi|7267557|emb|CAB78038.1| MLH1 protein [Arabidopsis thaliana] gi|332657326|gb|AEE82726.1| DNA mismatch repair protein MLH1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|13430732|gb|AAK25988.1|AF360278_1 putative MLH1 protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|356507690|ref|XP_003522597.1| PREDICTED: DNA mismatch repair protein Mlh1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|357455563|ref|XP_003598062.1| DNA mismatch repair protein Mlh1 [Medicago truncatula] gi|355487110|gb|AES68313.1| DNA mismatch repair protein Mlh1 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|115442355|ref|NP_001045457.1| Os01g0958900 [Oryza sativa Japonica Group] gi|57900283|dbj|BAD87116.1| putative MutL homolog 1 protein [Oryza sativa Japonica Group] gi|113534988|dbj|BAF07371.1| Os01g0958900 [Oryza sativa Japonica Group] gi|215737085|dbj|BAG96014.1| unnamed protein product [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 677 | ||||||
| TAIR|locus:2122388 | 737 | MLH1 "AT4G09140" [Arabidopsis | 0.927 | 0.852 | 0.770 | 2.3e-261 | |
| UNIPROTKB|Q5JN46 | 724 | P0401G10.10 "Os01g0958900 prot | 0.924 | 0.864 | 0.665 | 2.6e-230 | |
| ZFIN|ZDB-GENE-040426-1600 | 725 | mlh1 "mutL homolog 1, colon ca | 0.624 | 0.583 | 0.463 | 4.9e-142 | |
| UNIPROTKB|E1BQE0 | 757 | MLH1 "Uncharacterized protein" | 0.632 | 0.565 | 0.470 | 8e-142 | |
| MGI|MGI:101938 | 760 | Mlh1 "mutL homolog 1 (E. coli) | 0.601 | 0.535 | 0.475 | 8.1e-140 | |
| UNIPROTKB|P40692 | 756 | MLH1 "DNA mismatch repair prot | 0.580 | 0.519 | 0.488 | 2.4e-138 | |
| UNIPROTKB|E2RBM6 | 757 | MLH1 "Uncharacterized protein" | 0.621 | 0.556 | 0.464 | 3.5e-137 | |
| UNIPROTKB|F1MPG0 | 758 | MLH1 "Uncharacterized protein" | 0.571 | 0.510 | 0.481 | 1.4e-135 | |
| RGD|620937 | 757 | Mlh1 "mutL homolog 1, colon ca | 0.570 | 0.509 | 0.487 | 4.7e-133 | |
| UNIPROTKB|P97679 | 757 | Mlh1 "DNA mismatch repair prot | 0.570 | 0.509 | 0.487 | 4.7e-133 |
| TAIR|locus:2122388 MLH1 "AT4G09140" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 2515 (890.4 bits), Expect = 2.3e-261, P = 2.3e-261
Identities = 486/631 (77%), Positives = 555/631 (87%)
Query: 22 IHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHG 81
I RLEESVVNRIAAGEVIQRPVSAVKELVENSLDAD++SI+VVVKDGGLKLIQVSDDGHG
Sbjct: 29 IQRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADSSSISVVVKDGGLKLIQVSDDGHG 88
Query: 82 IRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYR 141
IR EDLPILCERHTTSKL+K+EDL S+ SMGFRGEALASMTYV HVTVTTITKG +HGYR
Sbjct: 89 IRREDLPILCERHTTSKLTKFEDLFSLSSMGFRGEALASMTYVAHVTVTTITKGQIHGYR 148
Query: 142 VSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHH 201
VSYRDGVME EPKACAAVKGTQIMVENLFYNMIARRKTLQNS+DDY KIVDLLSRMAIH+
Sbjct: 149 VSYRDGVMEHEPKACAAVKGTQIMVENLFYNMIARRKTLQNSADDYGKIVDLLSRMAIHY 208
Query: 202 TNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMD 261
NVSFSCRKHGA +ADVHS+ + SRLDSIR+VYGVSVA NL+++E S DSS F M+
Sbjct: 209 NNVSFSCRKHGAVKADVHSVVSPSRLDSIRSVYGVSVAKNLMKVEVSSC-DSSGCTFDME 267
Query: 262 GYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHV 321
G++SNSNYVAKKT +VLF+NDRLVEC+ LKRA+EIVYAAT PKASKPF+YMSI LP EHV
Sbjct: 268 GFISNSNYVAKKTILVLFINDRLVECSALKRAIEIVYAATLPKASKPFVYMSINLPREHV 327
Query: 322 DVNVHPTKREVSLLNQELIVEKIQSAVELKLRQSNDSRTYKEQTVESSPSSPYNPSKDLH 381
D+N+HPTK+EVSLLNQE+I+E IQS VE+KLR +ND+RT++EQ VE S+ + D
Sbjct: 328 DINIHPTKKEVSLLNQEIIIEMIQSEVEVKLRNANDTRTFQEQKVEYIQSTLTSQKSDSP 387
Query: 382 LN--PSGSKLQKVPVNKMVRTDSSDPAGRLHAYVQSKPHTSVASGPNLSAVRSSVRQRRN 439
++ PSG K QKVPVNKMVRTDSSDPAGRLHA++Q KP + +LS VRSSVRQRRN
Sbjct: 388 VSQKPSGQKTQKVPVNKMVRTDSSDPAGRLHAFLQPKPQSLPDKVSSLSVVRSSVRQRRN 447
Query: 440 LNETADLTSIQELIDDVDRNCHSGLLDIVRHCSFIGMADDVYALLQHNTHMYLANVVSLS 499
ETADL+S+QELI VD CH G+L+ VR+C+++GMADDV+AL+Q+NTH+YLANVV+LS
Sbjct: 448 PKETADLSSVQELIAGVDSCCHPGMLETVRNCTYVGMADDVFALVQYNTHLYLANVVNLS 507
Query: 500 KELMYQLVLRRFAHFNAIQLSDPAPLSELLMLALKEEDLDVENSENDDLKEKIAEMNTEL 559
KELMYQ LRRFAHFNAIQLSDPAPLSEL++LALKEEDLD N DDLKE+IAEMNTEL
Sbjct: 508 KELMYQQTLRRFAHFNAIQLSDPAPLSELILLALKEEDLDPGNDTKDDLKERIAEMNTEL 567
Query: 560 LKQKAEMLEEYFCVKIDTRGNLSRLPIILDQYTPDMDRIPEFVLCLGNDVDWEDEKCCFQ 619
LK+KAEMLEEYF V ID+ NLSRLP+ILDQYTPDMDR+PEF+LCLGNDV+WEDEK CFQ
Sbjct: 568 LKEKAEMLEEYFSVHIDSSANLSRLPVILDQYTPDMDRVPEFLLCLGNDVEWEDEKSCFQ 627
Query: 620 AIAAALGNFYAMHPPLLPNPSGEGLQCYKKR 650
++AA+GNFYAMHPPLLPNPSG+G+Q Y KR
Sbjct: 628 GVSAAIGNFYAMHPPLLPNPSGDGIQFYSKR 658
|
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| UNIPROTKB|Q5JN46 P0401G10.10 "Os01g0958900 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-040426-1600 mlh1 "mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1BQE0 MLH1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| MGI|MGI:101938 Mlh1 "mutL homolog 1 (E. coli)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P40692 MLH1 "DNA mismatch repair protein Mlh1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2RBM6 MLH1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1MPG0 MLH1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| RGD|620937 Mlh1 "mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P97679 Mlh1 "DNA mismatch repair protein Mlh1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9P7W6 | MLH1_SCHPO | No assigned EC number | 0.3463 | 0.8774 | 0.8684 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 677 | |||
| COG0323 | 638 | COG0323, MutL, DNA mismatch repair enzyme (predict | 1e-126 | |
| TIGR00585 | 312 | TIGR00585, mutl, DNA mismatch repair protein MutL | 1e-109 | |
| PRK00095 | 617 | PRK00095, mutL, DNA mismatch repair protein; Revie | 4e-99 | |
| cd03483 | 127 | cd03483, MutL_Trans_MLH1, MutL_Trans_MLH1: transdu | 1e-58 | |
| cd00782 | 122 | cd00782, MutL_Trans, MutL_Trans: transducer domain | 9e-33 | |
| pfam01119 | 119 | pfam01119, DNA_mis_repair, DNA mismatch repair pro | 3e-30 | |
| cd00329 | 107 | cd00329, TopoII_MutL_Trans, MutL_Trans: transducer | 2e-16 | |
| cd03484 | 142 | cd03484, MutL_Trans_hPMS_2_like, MutL_Trans_hPMS2_ | 1e-14 | |
| pfam13589 | 134 | pfam13589, HATPase_c_3, Histidine kinase-, DNA gyr | 2e-12 | |
| cd03485 | 132 | cd03485, MutL_Trans_hPMS_1_like, MutL_Trans_hPMS1_ | 1e-08 | |
| cd00075 | 103 | cd00075, HATPase_c, Histidine kinase-like ATPases; | 3e-07 | |
| cd03482 | 123 | cd03482, MutL_Trans_MutL, MutL_Trans_MutL: transdu | 9e-07 | |
| pfam02518 | 111 | pfam02518, HATPase_c, Histidine kinase-, DNA gyras | 4e-06 |
| >gnl|CDD|223400 COG0323, MutL, DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 387 bits (996), Expect = e-126
Identities = 170/556 (30%), Positives = 261/556 (46%), Gaps = 28/556 (5%)
Query: 20 PKIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDG 79
PKI +L +VN+IAAGEVI+RP S VKELVENSLDA AT I++ V+ GGLKLI+V D+G
Sbjct: 2 PKIRQLPPDLVNQIAAGEVIERPASVVKELVENSLDAGATRIDIEVEGGGLKLIRVRDNG 61
Query: 80 HGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHG 139
GI EDLP+ RH TSK++ EDL I+++GFRGEALAS+ V +T+T+ T G
Sbjct: 62 SGIDKEDLPLALLRHATSKIASLEDLFRIRTLGFRGEALASIASVSRLTITSRTAEASEG 121
Query: 140 YRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAI 199
++ G ME K A GT + V +LFYN ARRK L++ ++ I +L++R A+
Sbjct: 122 TQIYAEGGGMEVTVKPAAHPVGTTVEVRDLFYNTPARRKFLKSEKTEFGHITELINRYAL 181
Query: 200 HHTNVSFSCRKHGAARADVHSIATSSRLD-SIRTVYGVSVASNLVQLEASEYNDSSSFVF 258
H ++SFS +G R ++ + + L+ I VYG N + +E N+
Sbjct: 182 AHPDISFSLSHNGKLRIELLKLPGTGDLEERIAAVYGTEFLKNALPIE----NEHEDLRL 237
Query: 259 KMDGYVSNSNYV-AKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLP 317
GYVS + A + LFVN R V L A+ YA P+ P + + L
Sbjct: 238 S--GYVSLPEFTRASRDYQYLFVNGRPVRDKLLNHALREAYADYLPRGRYPVFVLFLELD 295
Query: 318 PEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKLRQSNDSR--TYKEQTVESSPSSPYN 375
PE VDVNVHP K+EV ++ L+ + I A++ L Q + + S P +
Sbjct: 296 PELVDVNVHPAKKEVRFSDERLVHDLIYEAIKEALAQQGLIPPASVEAPKSASQPLPAFQ 355
Query: 376 PSKDLHLNP-SGSKLQKVPVNKMVRTDSSDPAGRLHAYVQSKPHTSVASGPNLSAVRSSV 434
L + SK+ K +K ++PA S ++ + S+
Sbjct: 356 EPSPLPESRIQKSKVAKSGSSKSDAPSIAEPASGASPSPASPSIRPLSKNILPESSPGSL 415
Query: 435 RQRRNLNETADLTSIQELIDDVDRNCHSGLLDIVRHCSFIGMADDVYALLQHNTHMYLAN 494
+ + + + + D+ IG Y L +H + L +
Sbjct: 416 KNEDRSYDDLLEEPAESEDKQEEAEQKAISEDVFPLGEAIGQVHGTYILAEHEDGLVLVD 475
Query: 495 VVSLSKELMYQLVLRRFAHFNAIQLSDPAPLSELLMLALKEEDLDVENSENDDLKEKIAE 554
+ + ++Y+ + + +Q PL + L L E+ DV E
Sbjct: 476 QHAAHERILYEKLKNELGNVGELQ-----PLLIPIRLELSPEEADV------------LE 518
Query: 555 MNTELLKQKAEMLEEY 570
+ E L++ +E +
Sbjct: 519 EHKEELEKLGFEIESF 534
|
Length = 638 |
| >gnl|CDD|233035 TIGR00585, mutl, DNA mismatch repair protein MutL | Back alignment and domain information |
|---|
| >gnl|CDD|234630 PRK00095, mutL, DNA mismatch repair protein; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|239565 cd03483, MutL_Trans_MLH1, MutL_Trans_MLH1: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH1 (MutL homologue 1) | Back alignment and domain information |
|---|
| >gnl|CDD|238405 cd00782, MutL_Trans, MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of DNA mismatch repair (MutL/MLH1/PMS2) family | Back alignment and domain information |
|---|
| >gnl|CDD|201604 pfam01119, DNA_mis_repair, DNA mismatch repair protein, C-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|238202 cd00329, TopoII_MutL_Trans, MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins | Back alignment and domain information |
|---|
| >gnl|CDD|239566 cd03484, MutL_Trans_hPMS_2_like, MutL_Trans_hPMS2_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM2 (hPSM2) | Back alignment and domain information |
|---|
| >gnl|CDD|222246 pfam13589, HATPase_c_3, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | Back alignment and domain information |
|---|
| >gnl|CDD|239567 cd03485, MutL_Trans_hPMS_1_like, MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2 | Back alignment and domain information |
|---|
| >gnl|CDD|238030 cd00075, HATPase_c, Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins | Back alignment and domain information |
|---|
| >gnl|CDD|239564 cd03482, MutL_Trans_MutL, MutL_Trans_MutL: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to Escherichia coli MutL | Back alignment and domain information |
|---|
| >gnl|CDD|217081 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 677 | |||
| KOG1979 | 694 | consensus DNA mismatch repair protein - MLH1 famil | 100.0 | |
| COG0323 | 638 | MutL DNA mismatch repair enzyme (predicted ATPase) | 100.0 | |
| PRK00095 | 617 | mutL DNA mismatch repair protein; Reviewed | 100.0 | |
| TIGR00585 | 312 | mutl DNA mismatch repair protein MutL. All protein | 100.0 | |
| KOG1978 | 672 | consensus DNA mismatch repair protein - MLH2/PMS1/ | 100.0 | |
| KOG1977 | 1142 | consensus DNA mismatch repair protein - MLH3 famil | 100.0 | |
| PRK14867 | 659 | DNA topoisomerase VI subunit B; Provisional | 99.97 | |
| cd03483 | 127 | MutL_Trans_MLH1 MutL_Trans_MLH1: transducer domain | 99.96 | |
| PF01119 | 119 | DNA_mis_repair: DNA mismatch repair protein, C-ter | 99.95 | |
| cd03482 | 123 | MutL_Trans_MutL MutL_Trans_MutL: transducer domain | 99.95 | |
| cd03485 | 132 | MutL_Trans_hPMS_1_like MutL_Trans_hPMS1_like: tran | 99.94 | |
| cd03486 | 141 | MutL_Trans_MLH3 MutL_Trans_MLH3: transducer domain | 99.94 | |
| cd00782 | 122 | MutL_Trans MutL_Trans: transducer domain, having a | 99.93 | |
| TIGR01055 | 625 | parE_Gneg DNA topoisomerase IV, B subunit, proteob | 99.93 | |
| cd03484 | 142 | MutL_Trans_hPMS_2_like MutL_Trans_hPMS2_like: tran | 99.93 | |
| PRK14868 | 795 | DNA topoisomerase VI subunit B; Provisional | 99.93 | |
| smart00433 | 594 | TOP2c TopoisomeraseII. Eukaryotic DNA topoisomeras | 99.92 | |
| TIGR01059 | 654 | gyrB DNA gyrase, B subunit. This model describes t | 99.91 | |
| PRK05644 | 638 | gyrB DNA gyrase subunit B; Validated | 99.91 | |
| PRK05559 | 631 | DNA topoisomerase IV subunit B; Reviewed | 99.9 | |
| PRK14939 | 756 | gyrB DNA gyrase subunit B; Provisional | 99.88 | |
| PRK05218 | 613 | heat shock protein 90; Provisional | 99.86 | |
| TIGR01052 | 488 | top6b DNA topoisomerase VI, B subunit. This model | 99.86 | |
| PRK04184 | 535 | DNA topoisomerase VI subunit B; Validated | 99.77 | |
| PF08676 | 144 | MutL_C: MutL C terminal dimerisation domain; Inter | 99.72 | |
| cd00329 | 107 | TopoII_MutL_Trans MutL_Trans: transducer domain, h | 99.71 | |
| smart00853 | 136 | MutL_C MutL C terminal dimerisation domain. MutL a | 99.64 | |
| PF13589 | 137 | HATPase_c_3: Histidine kinase-, DNA gyrase B-, and | 99.54 | |
| COG1389 | 538 | DNA topoisomerase VI, subunit B [DNA replication, | 99.47 | |
| TIGR01058 | 637 | parE_Gpos DNA topoisomerase IV, B subunit, Gram-po | 99.43 | |
| COG0187 | 635 | GyrB Type IIA topoisomerase (DNA gyrase/topo II, t | 99.36 | |
| PRK14083 | 601 | HSP90 family protein; Provisional | 99.34 | |
| PTZ00109 | 903 | DNA gyrase subunit b; Provisional | 99.18 | |
| PHA02569 | 602 | 39 DNA topoisomerase II large subunit; Provisional | 99.11 | |
| PTZ00272 | 701 | heat shock protein 83 kDa (Hsp83); Provisional | 99.1 | |
| PTZ00130 | 814 | heat shock protein 90; Provisional | 99.08 | |
| COG0326 | 623 | HtpG Molecular chaperone, HSP90 family [Posttransl | 99.05 | |
| PTZ00108 | 1388 | DNA topoisomerase 2-like protein; Provisional | 98.96 | |
| PLN03128 | 1135 | DNA topoisomerase 2; Provisional | 98.87 | |
| PLN03237 | 1465 | DNA topoisomerase 2; Provisional | 98.81 | |
| PF02518 | 111 | HATPase_c: Histidine kinase-, DNA gyrase B-, and H | 98.51 | |
| KOG0019 | 656 | consensus Molecular chaperone (HSP90 family) [Post | 98.02 | |
| KOG0020 | 785 | consensus Endoplasmic reticulum glucose-regulated | 97.92 | |
| COG4191 | 603 | Signal transduction histidine kinase regulating C4 | 97.81 | |
| COG3290 | 537 | CitA Signal transduction histidine kinase regulati | 97.79 | |
| TIGR02938 | 494 | nifL_nitrog nitrogen fixation negative regulator N | 97.75 | |
| PRK15053 | 545 | dpiB sensor histidine kinase DpiB; Provisional | 97.67 | |
| PRK11006 | 430 | phoR phosphate regulon sensor protein; Provisional | 97.65 | |
| PRK10364 | 457 | sensor protein ZraS; Provisional | 97.56 | |
| PRK10604 | 433 | sensor protein RstB; Provisional | 97.52 | |
| cd00075 | 103 | HATPase_c Histidine kinase-like ATPases; This fami | 97.5 | |
| TIGR01386 | 457 | cztS_silS_copS heavy metal sensor kinase. Members | 97.48 | |
| PRK11086 | 542 | sensory histidine kinase DcuS; Provisional | 97.47 | |
| TIGR02916 | 679 | PEP_his_kin putative PEP-CTERM system histidine ki | 97.41 | |
| PRK10815 | 485 | sensor protein PhoQ; Provisional | 97.4 | |
| COG0642 | 336 | BaeS Signal transduction histidine kinase [Signal | 97.32 | |
| PRK10549 | 466 | signal transduction histidine-protein kinase BaeS; | 97.3 | |
| PRK10755 | 356 | sensor protein BasS/PmrB; Provisional | 97.29 | |
| PRK09303 | 380 | adaptive-response sensory kinase; Validated | 97.29 | |
| PRK13837 | 828 | two-component VirA-like sensor kinase; Provisional | 97.27 | |
| PRK11100 | 475 | sensory histidine kinase CreC; Provisional | 97.27 | |
| PRK15347 | 921 | two component system sensor kinase SsrA; Provision | 97.26 | |
| PRK09470 | 461 | cpxA two-component sensor protein; Provisional | 97.22 | |
| smart00387 | 111 | HATPase_c Histidine kinase-like ATPases. Histidine | 97.16 | |
| PRK09467 | 435 | envZ osmolarity sensor protein; Provisional | 97.14 | |
| PRK11073 | 348 | glnL nitrogen regulation protein NR(II); Provision | 97.1 | |
| TIGR01925 | 137 | spIIAB anti-sigma F factor. This model describes t | 96.92 | |
| PRK11091 | 779 | aerobic respiration control sensor protein ArcB; P | 96.89 | |
| PRK10337 | 449 | sensor protein QseC; Provisional | 96.88 | |
| TIGR03785 | 703 | marine_sort_HK proteobacterial dedicated sortase s | 96.69 | |
| TIGR02966 | 333 | phoR_proteo phosphate regulon sensor kinase PhoR. | 96.67 | |
| PRK11360 | 607 | sensory histidine kinase AtoS; Provisional | 96.6 | |
| PRK10618 | 894 | phosphotransfer intermediate protein in two-compon | 96.58 | |
| PRK13557 | 540 | histidine kinase; Provisional | 96.55 | |
| PRK10490 | 895 | sensor protein KdpD; Provisional | 96.55 | |
| PRK09835 | 482 | sensor kinase CusS; Provisional | 96.53 | |
| COG3851 | 497 | UhpB Signal transduction histidine kinase, glucose | 96.39 | |
| PRK10547 | 670 | chemotaxis protein CheA; Provisional | 96.3 | |
| PRK09959 | 1197 | hybrid sensory histidine kinase in two-component r | 96.3 | |
| PRK11466 | 914 | hybrid sensory histidine kinase TorS; Provisional | 96.3 | |
| PRK04069 | 161 | serine-protein kinase RsbW; Provisional | 96.29 | |
| TIGR02956 | 968 | TMAO_torS TMAO reductase sytem sensor TorS. This p | 96.22 | |
| PRK11107 | 919 | hybrid sensory histidine kinase BarA; Provisional | 96.07 | |
| COG5002 | 459 | VicK Signal transduction histidine kinase [Signal | 96.02 | |
| PRK10841 | 924 | hybrid sensory kinase in two-component regulatory | 96.0 | |
| PRK03660 | 146 | anti-sigma F factor; Provisional | 95.98 | |
| COG5000 | 712 | NtrY Signal transduction histidine kinase involved | 95.96 | |
| COG3852 | 363 | NtrB Signal transduction histidine kinase, nitroge | 95.95 | |
| TIGR01924 | 159 | rsbW_low_gc serine-protein kinase RsbW. This model | 95.95 | |
| COG0643 | 716 | CheA Chemotaxis protein histidine kinase and relat | 95.87 | |
| COG4192 | 673 | Signal transduction histidine kinase regulating ph | 95.68 | |
| COG3850 | 574 | NarQ Signal transduction histidine kinase, nitrate | 95.5 | |
| COG2205 | 890 | KdpD Osmosensitive K+ channel histidine kinase [Si | 95.48 | |
| PRK11644 | 495 | sensory histidine kinase UhpB; Provisional | 95.02 | |
| PF13581 | 125 | HATPase_c_2: Histidine kinase-like ATPase domain | 94.63 | |
| COG4585 | 365 | Signal transduction histidine kinase [Signal trans | 94.58 | |
| PRK10600 | 569 | nitrate/nitrite sensor protein NarX; Provisional | 94.16 | |
| PRK13560 | 807 | hypothetical protein; Provisional | 93.42 | |
| COG3920 | 221 | Signal transduction histidine kinase [Signal trans | 91.72 | |
| PRK10935 | 565 | nitrate/nitrite sensor protein NarQ; Provisional | 91.44 | |
| COG2172 | 146 | RsbW Anti-sigma regulatory factor (Ser/Thr protein | 90.53 | |
| PRK13559 | 361 | hypothetical protein; Provisional | 90.38 | |
| KOG0355 | 842 | consensus DNA topoisomerase type II [Chromatin str | 90.33 | |
| COG2972 | 456 | Predicted signal transduction protein with a C-ter | 89.73 | |
| COG3275 | 557 | LytS Putative regulator of cell autolysis [Signal | 88.16 | |
| KOG0787 | 414 | consensus Dehydrogenase kinase [Signal transductio | 87.28 | |
| COG4564 | 459 | Signal transduction histidine kinase [Signal trans | 84.33 | |
| COG4251 | 750 | Bacteriophytochrome (light-regulated signal transd | 83.24 |
| >KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-147 Score=1184.84 Aligned_cols=620 Identities=50% Similarity=0.796 Sum_probs=560.2
Q ss_pred CCcccccCChHHHHHHhcCCcccCHHHHHHHHHHhhhhCCCCceEEEEeeCCeeEEEEEeCCCCCCcccHhhhhhcccCC
Q 005789 18 EPPKIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTS 97 (677)
Q Consensus 18 ~~~~I~~L~~~v~~kIaAgevI~~p~~~vkELveNSiDAgAt~I~V~i~~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TS 97 (677)
.|+.|++||++|+|||||||||+||++|+|||||||||||||+|.|.+++||++++||+|||+||.++||+++|+||+||
T Consensus 4 ~~~~IrrLde~VVNRIAAGEVI~RP~NAlKEliENSLDA~ST~I~V~vk~GGLKLlQisDnG~GI~reDl~ilCeRftTS 83 (694)
T KOG1979|consen 4 VPRKIRRLDEDVVNRIAAGEVIQRPVNALKELIENSLDANSTSIDVLVKDGGLKLLQISDNGSGIRREDLPILCERFTTS 83 (694)
T ss_pred cchhhhcCcHHHHhHhhccchhhchHHHHHHHHhccccCCCceEEEEEecCCeEEEEEecCCCccchhhhHHHHHHhhhh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccccccCccchhhhhhhcceEEEEEEEeCCCcceEEEEEeCCeeccccccccCCCceEEEEEeeeccchhhh
Q 005789 98 KLSKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARR 177 (677)
Q Consensus 98 K~~~~~dl~~i~t~GfRGeALaSIs~vs~v~I~Tr~~~~~~~~~~~~~~g~~~~~~~~~~~~~GTtV~v~dLF~n~PvRr 177 (677)
|+.+||||.+++||||||||||||++||+|+|+||++++.|||++.|.||++...|+||++.+||+|+|+|||||+|+||
T Consensus 84 KL~kFEDL~~lsTyGFRGEALASiShVA~VtV~TK~~~~~cayrasY~DGkm~~~pKpcAgk~GT~I~vedLFYN~~~Rr 163 (694)
T KOG1979|consen 84 KLTKFEDLFSLSTYGFRGEALASISHVAHVTVTTKTAEGKCAYRASYRDGKMIATPKPCAGKQGTIITVEDLFYNMPTRR 163 (694)
T ss_pred hcchhHHHHhhhhcCccHHHHhhhhheeEEEEEEeecCceeeeEEEeeccccccCCCCccCCCceEEEehHhhccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred hcccCCchhHHHHHHHHHHHHhcCCCeEEEEEECCeeeEEEEeCCCCCHHHHHHHHhChhhhccce-Eec-ccccCCCCC
Q 005789 178 KTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLV-QLE-ASEYNDSSS 255 (677)
Q Consensus 178 k~l~~~~~e~~~i~~~v~~yAl~~p~v~F~l~~~g~~~~~l~t~~~~s~~~~i~~i~G~~~~~~L~-~i~-~~~~~~~~~ 255 (677)
+.|++.++|+.+|.++|.+||+|+|+|+|+|++.|+....++|.+..+..|.|+.+||.+++++|+ ++. +.+ ..
T Consensus 164 kal~~~~EE~~ki~dlv~ryAIHn~~VsFs~rk~Gd~~~dl~t~~~~s~~D~ir~i~g~~Va~~ll~els~~~~--~~-- 239 (694)
T KOG1979|consen 164 KALRNHAEEYRKIMDLVGRYAIHNPRVSFSLRKQGDTVADLRTSVSCSREDNIRNIYGVSVAKNLLNELSKCDS--KL-- 239 (694)
T ss_pred HHhcCcHHHHHHHHHHHHHHheeCCCcceEEeeccccccccccCCccccccchhhhhhhHHHHHHHHHhhhccC--ce--
Confidence 999999999999999999999999999999999999899999999999999999999999999998 665 433 33
Q ss_pred cceEEEEEEeCCCCCCCCceEEEEEcCeecCChhHHHHHHHHHhhcCCCCCCceEEEEEEcCCCccccccCCCCCeEecC
Q 005789 256 FVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLL 335 (677)
Q Consensus 256 ~~~~v~G~is~~~~~~~k~~q~ifIN~R~V~~~~l~kaI~~~y~~~lp~~~~P~~~L~i~i~p~~vDVNVhPtK~eV~F~ 335 (677)
..|+++|||+++++..++....+|||||+|+|..|+++|+.+|+.+||++.+||+||+|.++|+.|||||||||+||+|+
T Consensus 240 l~f~~~g~Isn~n~~akk~i~vlFIN~RLVes~~Lr~ale~VYa~yLpk~~~pFvYLsL~i~p~~vDVNVHPTK~eV~FL 319 (694)
T KOG1979|consen 240 LKFSAEGYISNANYSAKKSILVLFINGRLVESDELRHALEEVYAAYLPKGHHPFVYLSLNIDPENVDVNVHPTKREVHFL 319 (694)
T ss_pred eEEeccceEechhhhhhhheEEEEEcCcEeehHHHHHHHHHHHHHhcCCCCCceEEEEEecCHHHcccccCCCcceeEee
Confidence 67899999999999999988999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHhcCCCCcccccccccCCCCCCCCCCC--CCCCCCCCCccccCCCCcceecCCCCCCccccccc
Q 005789 336 NQELIVEKIQSAVELKLRQSNDSRTYKEQTVESSPSSPYNPSK--DLHLNPSGSKLQKVPVNKMVRTDSSDPAGRLHAYV 413 (677)
Q Consensus 336 ~e~~I~~~I~~~l~~~L~~~~~~r~~~~q~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~vr~d~~~~~~~l~~~~ 413 (677)
++++|++.|++.++..|+..+.+|+|..|.+.|........++ +...+++.+.+.+.+++++||||++ +++|++|+
T Consensus 320 ~qEeIie~I~~~ie~~L~~~d~er~~~~q~~iP~~~~~~~er~~~~~~~~~s~~ks~k~~~~~mVRtDss--e~ki~~fl 397 (694)
T KOG1979|consen 320 NQEEIIERICQQIEERLSALDTERTFLKQVMIPGPSTLKSERNKPSLKQSPSAQKSDKRYENKMVRTDSS--ERKIDSFL 397 (694)
T ss_pred cHHHHHHHHHHHHHHHHhccCcccchhhhhcccCCccccccccCccccccccccccchhcccceeecccc--ccchhhhh
Confidence 9999999999999999999999999999999987653322211 1122445666678899999999999 89999999
Q ss_pred ccCCC---CC-CCCC-----CCccc--c----chhhh---hhccccccccccchHHHHHHhhhhcCCcccccccccEEEE
Q 005789 414 QSKPH---TS-VASG-----PNLSA--V----RSSVR---QRRNLNETADLTSIQELIDDVDRNCHSGLLDIVRHCSFIG 475 (677)
Q Consensus 414 ~~~~~---~s-~~~~-----~~~~~--~----~~~~~---~~~~~~~~~~l~Sv~~L~~~v~~~~~~~l~~~~~~~~~VG 475 (677)
..... ++ ..++ .+..+ . .+.+. ..+++++..+|+||+.|+++|.+++|..++++|++|+|||
T Consensus 398 ~~~~~~~~s~~~~nes~~~~~s~~~~e~s~~p~dd~r~~~~~~~~rE~~~L~Si~~Lr~eV~~~~h~~l~e~~~n~~yVG 477 (694)
T KOG1979|consen 398 SPLTQVGSSNSTGNESEQGDDSSLSNENSRLPEDDVRFEYTAKTPRERFRLESIKKLRKEVIDSCHVVLTEMFRNLSYVG 477 (694)
T ss_pred CCccccCcccccccccccccccccccccccCccchhhhhhccccchhccchhhHHHHHHHHHhhccHHHHHHHHhcceee
Confidence 54331 11 0000 00000 0 00111 1123333399999999999999999999999999999999
Q ss_pred EEcCcEEEEEECCeEEEEechhHHHHHHHHHHHHHhcCcCeEecCCCcChhHHHhhhccccccccccCcCchhHHHHHHH
Q 005789 476 MADDVYALLQHNTHMYLANVVSLSKELMYQLVLRRFAHFNAIQLSDPAPLSELLMLALKEEDLDVENSENDDLKEKIAEM 555 (677)
Q Consensus 476 ~vd~~yiLiQ~~~~LyLIDqhaahEei~YQ~~l~~fgn~~~q~L~~P~~l~~Ll~l~l~~~~~~~~~~~~~~~~~~~~~~ 555 (677)
+||++++|+||+++||+||+..+++|+|||+++.+||||+.++|++|+++.+|++++++.+ +++|+++|++++.+++.
T Consensus 478 ~vd~~~alvQh~t~Ly~~d~~~ls~ElfYQi~i~dF~Nfg~~~l~~p~~l~el~~l~l~~e--~~~~~~~d~~ke~~~~~ 555 (694)
T KOG1979|consen 478 VVDERTALVQHGTSLYLCDTVSLSKELFYQILITDFGNFGKIRLSEPLPLSELLMLALESE--EPGWTADDGFKEKIARF 555 (694)
T ss_pred eechhhhhhhcCceEEEechHHHHHHHHHHHHHHHhcccceeecCCCccHHHHHHHhccCc--cCCCCccchhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998765 47999999999999999
Q ss_pred HHHHHHHHHHHHhhhcceEEeeCCCeeccCcccCCCCCCCCCHHHHHHHhcCCCCCchHHHHHHHHHHHHhhccccCCCC
Q 005789 556 NTELLKQKAEMLEEYFCVKIDTRGNLSRLPIILDQYTPDMDRIPEFVLCLGNDVDWEDEKCCFQAIAAALGNFYAMHPPL 635 (677)
Q Consensus 556 ~~~~L~~~~emL~eYFgi~Ie~~G~L~siP~lL~~y~P~~~~Lp~fl~~La~~v~w~~E~~cf~~i~r~lA~fys~~~~~ 635 (677)
+++.|.++++||.|||||+|+++|.|.+||+|+++|.|++++||.|++||+++|||++|++||++|||++|.||+..+..
T Consensus 556 ~~e~l~~ka~ml~dYFsi~i~e~g~l~~lP~L~~~y~P~le~lP~fi~rL~~~vdwedEk~cf~~i~r~ia~fY~~~t~~ 635 (694)
T KOG1979|consen 556 AAEKLLEKADMLHDYFSIEIDEEGLLTGLPSLLHQYIPPLEKLPFFILRLGKEVDWEDEKECFEGICRAIATFYTLDTSS 635 (694)
T ss_pred HHHHHhhhHHHHhhheEEEEccCCceecCchhhcccCCChhhCcHHHHhhccccchHHHHHHHHHHHHHHHHHhccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999755544
Q ss_pred CCCCCCCcce
Q 005789 636 LPNPSGEGLQ 645 (677)
Q Consensus 636 ~~~~~~~~~~ 645 (677)
.+-...+|..
T Consensus 636 ~~ls~~e~a~ 645 (694)
T KOG1979|consen 636 AQLSEVEGAT 645 (694)
T ss_pred cccccccccc
Confidence 3333334433
|
|
| >COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK00095 mutL DNA mismatch repair protein; Reviewed | Back alignment and domain information |
|---|
| >TIGR00585 mutl DNA mismatch repair protein MutL | Back alignment and domain information |
|---|
| >KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK14867 DNA topoisomerase VI subunit B; Provisional | Back alignment and domain information |
|---|
| >cd03483 MutL_Trans_MLH1 MutL_Trans_MLH1: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH1 (MutL homologue 1) | Back alignment and domain information |
|---|
| >PF01119 DNA_mis_repair: DNA mismatch repair protein, C-terminal domain; InterPro: IPR013507 This entry represents the C-terminal domain of DNA mismatch repair proteins, such as MutL | Back alignment and domain information |
|---|
| >cd03482 MutL_Trans_MutL MutL_Trans_MutL: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to Escherichia coli MutL | Back alignment and domain information |
|---|
| >cd03485 MutL_Trans_hPMS_1_like MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2 | Back alignment and domain information |
|---|
| >cd03486 MutL_Trans_MLH3 MutL_Trans_MLH3: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH3 (MutL homologue 3) | Back alignment and domain information |
|---|
| >cd00782 MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of DNA mismatch repair (MutL/MLH1/PMS2) family | Back alignment and domain information |
|---|
| >TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial | Back alignment and domain information |
|---|
| >cd03484 MutL_Trans_hPMS_2_like MutL_Trans_hPMS2_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM2 (hPSM2) | Back alignment and domain information |
|---|
| >PRK14868 DNA topoisomerase VI subunit B; Provisional | Back alignment and domain information |
|---|
| >smart00433 TOP2c TopoisomeraseII | Back alignment and domain information |
|---|
| >TIGR01059 gyrB DNA gyrase, B subunit | Back alignment and domain information |
|---|
| >PRK05644 gyrB DNA gyrase subunit B; Validated | Back alignment and domain information |
|---|
| >PRK05559 DNA topoisomerase IV subunit B; Reviewed | Back alignment and domain information |
|---|
| >PRK14939 gyrB DNA gyrase subunit B; Provisional | Back alignment and domain information |
|---|
| >PRK05218 heat shock protein 90; Provisional | Back alignment and domain information |
|---|
| >TIGR01052 top6b DNA topoisomerase VI, B subunit | Back alignment and domain information |
|---|
| >PRK04184 DNA topoisomerase VI subunit B; Validated | Back alignment and domain information |
|---|
| >PF08676 MutL_C: MutL C terminal dimerisation domain; InterPro: IPR014790 MutL and MutS are key components of the DNA repair machinery that corrects replication errors [] | Back alignment and domain information |
|---|
| >cd00329 TopoII_MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins | Back alignment and domain information |
|---|
| >smart00853 MutL_C MutL C terminal dimerisation domain | Back alignment and domain information |
|---|
| >PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B | Back alignment and domain information |
|---|
| >COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive | Back alignment and domain information |
|---|
| >COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK14083 HSP90 family protein; Provisional | Back alignment and domain information |
|---|
| >PTZ00109 DNA gyrase subunit b; Provisional | Back alignment and domain information |
|---|
| >PHA02569 39 DNA topoisomerase II large subunit; Provisional | Back alignment and domain information |
|---|
| >PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional | Back alignment and domain information |
|---|
| >PTZ00130 heat shock protein 90; Provisional | Back alignment and domain information |
|---|
| >COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PTZ00108 DNA topoisomerase 2-like protein; Provisional | Back alignment and domain information |
|---|
| >PLN03128 DNA topoisomerase 2; Provisional | Back alignment and domain information |
|---|
| >PLN03237 DNA topoisomerase 2; Provisional | Back alignment and domain information |
|---|
| >PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins | Back alignment and domain information |
|---|
| >KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL | Back alignment and domain information |
|---|
| >PRK15053 dpiB sensor histidine kinase DpiB; Provisional | Back alignment and domain information |
|---|
| >PRK11006 phoR phosphate regulon sensor protein; Provisional | Back alignment and domain information |
|---|
| >PRK10364 sensor protein ZraS; Provisional | Back alignment and domain information |
|---|
| >PRK10604 sensor protein RstB; Provisional | Back alignment and domain information |
|---|
| >cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins | Back alignment and domain information |
|---|
| >TIGR01386 cztS_silS_copS heavy metal sensor kinase | Back alignment and domain information |
|---|
| >PRK11086 sensory histidine kinase DcuS; Provisional | Back alignment and domain information |
|---|
| >TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase | Back alignment and domain information |
|---|
| >PRK10815 sensor protein PhoQ; Provisional | Back alignment and domain information |
|---|
| >COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK10549 signal transduction histidine-protein kinase BaeS; Provisional | Back alignment and domain information |
|---|
| >PRK10755 sensor protein BasS/PmrB; Provisional | Back alignment and domain information |
|---|
| >PRK09303 adaptive-response sensory kinase; Validated | Back alignment and domain information |
|---|
| >PRK13837 two-component VirA-like sensor kinase; Provisional | Back alignment and domain information |
|---|
| >PRK11100 sensory histidine kinase CreC; Provisional | Back alignment and domain information |
|---|
| >PRK15347 two component system sensor kinase SsrA; Provisional | Back alignment and domain information |
|---|
| >PRK09470 cpxA two-component sensor protein; Provisional | Back alignment and domain information |
|---|
| >smart00387 HATPase_c Histidine kinase-like ATPases | Back alignment and domain information |
|---|
| >PRK09467 envZ osmolarity sensor protein; Provisional | Back alignment and domain information |
|---|
| >PRK11073 glnL nitrogen regulation protein NR(II); Provisional | Back alignment and domain information |
|---|
| >TIGR01925 spIIAB anti-sigma F factor | Back alignment and domain information |
|---|
| >PRK11091 aerobic respiration control sensor protein ArcB; Provisional | Back alignment and domain information |
|---|
| >PRK10337 sensor protein QseC; Provisional | Back alignment and domain information |
|---|
| >TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase | Back alignment and domain information |
|---|
| >TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR | Back alignment and domain information |
|---|
| >PRK11360 sensory histidine kinase AtoS; Provisional | Back alignment and domain information |
|---|
| >PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional | Back alignment and domain information |
|---|
| >PRK13557 histidine kinase; Provisional | Back alignment and domain information |
|---|
| >PRK10490 sensor protein KdpD; Provisional | Back alignment and domain information |
|---|
| >PRK09835 sensor kinase CusS; Provisional | Back alignment and domain information |
|---|
| >COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK10547 chemotaxis protein CheA; Provisional | Back alignment and domain information |
|---|
| >PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional | Back alignment and domain information |
|---|
| >PRK11466 hybrid sensory histidine kinase TorS; Provisional | Back alignment and domain information |
|---|
| >PRK04069 serine-protein kinase RsbW; Provisional | Back alignment and domain information |
|---|
| >TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS | Back alignment and domain information |
|---|
| >PRK11107 hybrid sensory histidine kinase BarA; Provisional | Back alignment and domain information |
|---|
| >COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional | Back alignment and domain information |
|---|
| >PRK03660 anti-sigma F factor; Provisional | Back alignment and domain information |
|---|
| >COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >TIGR01924 rsbW_low_gc serine-protein kinase RsbW | Back alignment and domain information |
|---|
| >COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK11644 sensory histidine kinase UhpB; Provisional | Back alignment and domain information |
|---|
| >PF13581 HATPase_c_2: Histidine kinase-like ATPase domain | Back alignment and domain information |
|---|
| >COG4585 Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK10600 nitrate/nitrite sensor protein NarX; Provisional | Back alignment and domain information |
|---|
| >PRK13560 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >COG3920 Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK10935 nitrate/nitrite sensor protein NarQ; Provisional | Back alignment and domain information |
|---|
| >COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK13559 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG4564 Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 677 | ||||
| 3na3_A | 348 | Mutl Protein Homolog 1 Isoform 1 From Homo Sapiens | 1e-106 | ||
| 1b62_A | 355 | Mutl Complexed With Adp Length = 355 | 8e-43 | ||
| 1bkn_A | 352 | Crystal Structure Of An N-Terminal 40kd Fragment Of | 9e-43 | ||
| 1b63_A | 333 | Mutl Complexed With Adpnp Length = 333 | 3e-42 | ||
| 1nhj_A | 333 | Crystal Structure Of N-Terminal 40kd MutlA100P MUTA | 1e-41 | ||
| 3rbn_A | 284 | Crystal Structure Of Mutl Protein Homolog 1 Isoform | 4e-37 | ||
| 3h4l_A | 367 | Crystal Structure Of N Terminal Domain Of A Dna Rep | 1e-36 | ||
| 1ea6_A | 364 | N-Terminal 40kda Fragment Of Nhpms2 Complexed With | 4e-36 | ||
| 1h7u_A | 365 | Hpms2-atpgs Length = 365 | 6e-36 | ||
| 1h7s_A | 365 | N-Terminal 40kda Fragment Of Human Pms2 Length = 36 | 6e-36 | ||
| 4fmn_A | 288 | Structure Of The C-terminal Domain Of The Saccharom | 1e-15 | ||
| 4e4w_A | 285 | Structure Of The C-terminal Domain Of The Saccharom | 1e-15 |
| >pdb|3NA3|A Chain A, Mutl Protein Homolog 1 Isoform 1 From Homo Sapiens Length = 348 | Back alignment and structure |
|
| >pdb|1B62|A Chain A, Mutl Complexed With Adp Length = 355 | Back alignment and structure |
| >pdb|1BKN|A Chain A, Crystal Structure Of An N-Terminal 40kd Fragment Of E. Coli Dna Mismatch Repair Protein Mutl Length = 352 | Back alignment and structure |
| >pdb|1B63|A Chain A, Mutl Complexed With Adpnp Length = 333 | Back alignment and structure |
| >pdb|1NHJ|A Chain A, Crystal Structure Of N-Terminal 40kd MutlA100P MUTANT PROTEIN COMPLEX With Adpnp And One Sodium Length = 333 | Back alignment and structure |
| >pdb|3RBN|A Chain A, Crystal Structure Of Mutl Protein Homolog 1 Isoform 1 [homo Sapiens] Length = 284 | Back alignment and structure |
| >pdb|3H4L|A Chain A, Crystal Structure Of N Terminal Domain Of A Dna Repair Prote Length = 367 | Back alignment and structure |
| >pdb|1EA6|A Chain A, N-Terminal 40kda Fragment Of Nhpms2 Complexed With Adp Length = 364 | Back alignment and structure |
| >pdb|1H7U|A Chain A, Hpms2-atpgs Length = 365 | Back alignment and structure |
| >pdb|1H7S|A Chain A, N-Terminal 40kda Fragment Of Human Pms2 Length = 365 | Back alignment and structure |
| >pdb|4FMN|A Chain A, Structure Of The C-terminal Domain Of The Saccharomyces Cerevisiae Mutl Alpha (mlh1/pms1) Heterodimer Bound To A Fragment Of Ntg2 Length = 288 | Back alignment and structure |
| >pdb|4E4W|A Chain A, Structure Of The C-terminal Domain Of The Saccharomyces Cerevisiae Mutl Alpha (mlh1/pms1) Heterodimer Length = 285 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} Length = 348 | Back alignment and structure |
|---|
Score = 495 bits (1277), Expect = e-172
Identities = 181/346 (52%), Positives = 253/346 (73%), Gaps = 4/346 (1%)
Query: 20 PKIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDG 79
I RL+E+VVNRIAAGEVIQRP +A+KE++EN LDA +TSI V+VK+GGLKLIQ+ D+G
Sbjct: 7 GVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNG 66
Query: 80 HGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHG 139
GIR EDL I+CER TTSKL +EDL SI + GFRGEALAS+++V HVT+TT T
Sbjct: 67 TGIRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCA 126
Query: 140 YRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAI 199
YR SY DG +++ PK CA +GTQI VE+LFYN+ RRK L+N S++Y KI++++ R ++
Sbjct: 127 YRASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSV 186
Query: 200 HHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFK 259
H+ +SFS +K G ADV ++ +S +D+IR+++G +V+ L+++ + + FK
Sbjct: 187 HNAGISFSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEIGCED----KTLAFK 242
Query: 260 MDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPE 319
M+GY+SN+NY KK +LF+N RLVE L++A+E VYAA PK + PF+Y+S+ + P+
Sbjct: 243 MNGYISNANYSVKKCIFLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQ 302
Query: 320 HVDVNVHPTKREVSLLNQELIVEKIQSAVELKLRQSNDSRTYKEQT 365
+VDVNVHPTK EV L++E I+E++Q +E KL SN SR Y QT
Sbjct: 303 NVDVNVHPTKHEVHFLHEESILERVQQHIESKLLGSNSSRMYFTQT 348
|
| >1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* Length = 365 | Back alignment and structure |
|---|
| >3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} Length = 367 | Back alignment and structure |
|---|
| >1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* Length = 333 | Back alignment and structure |
|---|
| >3rbn_A DNA mismatch repair protein MLH1; structural genomics, structural genomics consortium, SGC, DN mismatch repair, endonucleases, protein binding; HET: DNA; 2.16A {Homo sapiens} Length = 284 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Length = 530 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 677 | |||
| 3na3_A | 348 | DNA mismatch repair protein MLH1; MUTL protein hom | 100.0 | |
| 3h4l_A | 367 | DNA mismatch repair protein PMS1; ATP binding, DNA | 100.0 | |
| 1h7s_A | 365 | PMS1 protein homolog 2; DNA repair, GHL ATPase, mi | 100.0 | |
| 1b63_A | 333 | MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A | 100.0 | |
| 3rbn_A | 284 | DNA mismatch repair protein MLH1; structural genom | 100.0 | |
| 1s16_A | 390 | Topoisomerase IV subunit B; two-domain protein com | 100.0 | |
| 3cwv_A | 369 | DNA gyrase, B subunit, truncated; structural genom | 99.98 | |
| 1ei1_A | 391 | DNA gyrase B, GYRB; ATPase domain, dimer, isomeras | 99.97 | |
| 3fv5_A | 201 | DNA topoisomerase 4 subunit B; topoisomerase IV B | 99.97 | |
| 1y4s_A | 559 | Chaperone protein HTPG; HSP90, molecular chaperone | 99.95 | |
| 2ioq_A | 624 | Chaperone protein HTPG; heat shock protein, HSP90; | 99.95 | |
| 1kij_A | 390 | DNA gyrase subunit B; topoisomerase, gyrase B-coum | 99.94 | |
| 2o1u_A | 666 | Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, | 99.93 | |
| 4duh_A | 220 | DNA gyrase subunit B; structure-based drug design, | 99.92 | |
| 3t0h_A | 228 | Heat shock protein HSP 90-alpha; chaperone, ATPase | 99.92 | |
| 3o0i_A | 256 | HSP90AA1 protein; HSP90 heat-shock proteins, chape | 99.9 | |
| 4emv_A | 226 | DNA topoisomerase IV, B subunit; protein-inhibitor | 99.89 | |
| 1zxm_A | 400 | TOPO IIA ATPase, DNA topoisomerase II, alpha isozy | 99.89 | |
| 2ior_A | 235 | Chaperone protein HTPG; heat shock protein, HSP90; | 99.88 | |
| 3lnu_A | 408 | Topoisomerase IV subunit B; PARE, ATP-binding, nuc | 99.87 | |
| 3ttz_A | 198 | DNA gyrase subunit B; protein-inhibitor complex, A | 99.87 | |
| 2gqp_A | 236 | Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, | 99.83 | |
| 1yc1_A | 264 | HSP 86, heat shock protein HSP 90-alpha; cell-cycl | 99.81 | |
| 2wer_A | 220 | ATP-dependent molecular chaperone HSP82; ATPase, A | 99.78 | |
| 3kdg_A | 197 | DNA mismatch repair protein MUTL; endonuclease, DN | 99.75 | |
| 3ncv_A | 220 | DNA mismatch repair protein MUTL; endonuclease, di | 99.74 | |
| 2q2e_B | 621 | Type 2 DNA topoisomerase 6 subunit B; DNA-binding, | 99.72 | |
| 2zbk_B | 530 | Type 2 DNA topoisomerase 6 subunit B; DNA binding | 99.71 | |
| 1mu5_A | 471 | Type II DNA topoisomerase VI subunit B; GHKL ATPas | 99.71 | |
| 1qy5_A | 269 | Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: N | 99.7 | |
| 1x9z_A | 188 | DNA mismatch repair protein MUTL; alpha-beta fold, | 99.63 | |
| 2cg9_A | 677 | ATP-dependent molecular chaperone HSP82; chaperone | 99.6 | |
| 3peh_A | 281 | Endoplasmin homolog; structural genomics, structur | 99.55 | |
| 1pvg_A | 418 | DNA topoisomerase II; GHKL ATPase domain; HET: DNA | 99.53 | |
| 3nmq_A | 239 | Heat shock protein HSP 90-beta; ATPase, chaperone- | 99.49 | |
| 3ied_A | 272 | Heat shock protein; HSP90, chaperone, structural g | 99.18 | |
| 4gfh_A | 1177 | DNA topoisomerase 2; topoisomerase, protein-DNA co | 98.75 | |
| 1th8_A | 145 | Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-s | 98.07 | |
| 1bxd_A | 161 | ENVZ(290-450), protein (osmolarity sensor protein | 98.05 | |
| 1id0_A | 152 | PHOQ histidine kinase; PHOQ/PHOP, signal transduct | 98.05 | |
| 3jz3_A | 222 | Sensor protein QSEC; helix-turn-helix, kinase doma | 97.93 | |
| 1r62_A | 160 | Nitrogen regulation protein NR(II); PII, histidine | 97.89 | |
| 1i58_A | 189 | Chemotaxis protein CHEA; beta-alpha sandwich, sign | 97.89 | |
| 2c2a_A | 258 | Sensor histidine kinase; phosphotransfer, PHOQ, se | 97.88 | |
| 3d36_A | 244 | Sporulation kinase B; GHKL ATPase, four helix bund | 97.81 | |
| 1ysr_A | 150 | Sensor-type histidine kinase PRRB; ATP-binding dom | 97.8 | |
| 3a0y_A | 152 | Sensor protein; ATP-LID, kinase, phosphoprotein, t | 97.78 | |
| 4ew8_A | 268 | Sensor protein DIVL; signal transduction, two-comp | 97.77 | |
| 3sl2_A | 177 | Sensor histidine kinase YYCG; ATP binding, intact | 97.71 | |
| 3ehg_A | 128 | Sensor kinase (YOCF protein); GHL ATPase domain, t | 97.71 | |
| 1b3q_A | 379 | Protein (chemotaxis protein CHEA); histine kinase, | 97.68 | |
| 2q8g_A | 407 | [pyruvate dehydrogenase [lipoamide]] kinase isozy; | 97.66 | |
| 2e0a_A | 394 | Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP | 97.65 | |
| 1gkz_A | 388 | [3-methyl-2-oxobutanoate dehydrogenase [lipoamide] | 97.65 | |
| 3zxo_A | 129 | Redox sensor histidine kinase response regulator; | 97.58 | |
| 1y8o_A | 419 | [pyruvate dehydrogenase [lipoamide]] kinase isozy; | 97.56 | |
| 3a0r_A | 349 | Sensor protein; four helix bundle, PAS fold, kinas | 97.56 | |
| 2btz_A | 394 | Pyruvate dehydrogenase kinase isoenzyme 2; GHKL mo | 97.49 | |
| 3ehh_A | 218 | Sensor kinase (YOCF protein); four-helix bundle, G | 97.42 | |
| 3zxq_A | 124 | Hypoxia sensor histidine kinase response regulato; | 97.3 | |
| 4fpp_A | 247 | Phosphotransferase; four helix bundle, bergerat fo | 96.55 | |
| 3ke6_A | 399 | Protein RV1364C/MT1410; anti-sigma factor, anti-si | 93.85 | |
| 1ixm_A | 192 | SPO0B, protein (sporulation response regulatory pr | 91.13 |
| >3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-83 Score=684.81 Aligned_cols=343 Identities=53% Similarity=0.884 Sum_probs=284.6
Q ss_pred CcccccCChHHHHHHhcCCcccCHHHHHHHHHHhhhhCCCCceEEEEeeCCeeEEEEEeCCCCCCcccHhhhhhcccCCC
Q 005789 19 PPKIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSK 98 (677)
Q Consensus 19 ~~~I~~L~~~v~~kIaAgevI~~p~~~vkELveNSiDAgAt~I~V~i~~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK 98 (677)
+++|++||++++++|+|||||.+|.+||+|||+||+||+|+.|.|.++.+|...|+|.|||+||++++++.+|+||+|||
T Consensus 6 ~~~I~~L~~~~~~~Iaagevi~~~~~vv~eLv~NAidA~a~~I~I~i~~~~~~~I~V~DnG~GI~~~~l~~~~~~~~tsK 85 (348)
T 3na3_A 6 AGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTGIRKEDLDIVCERFTTSK 85 (348)
T ss_dssp CCCCCCCCHHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTCSEEEEEEEGGGTSEEEEEECSCCCCGGGGGTTTSTTCCSS
T ss_pred ccccccCCHHHHHhhcccCcccCHHHHHHHHHHHHHHcCCCEEEEEEEeCCEEEEEEEECCcCcChHHhhhhhccccccc
Confidence 35699999999999999999999999999999999999999999999988877899999999999999999999999999
Q ss_pred cccccccccccccCccchhhhhhhcceEEEEEEEeCCCcceEEEEEeCCeeccccccccCCCceEEEEEeeeccchhhhh
Q 005789 99 LSKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRK 178 (677)
Q Consensus 99 ~~~~~dl~~i~t~GfRGeALaSIs~vs~v~I~Tr~~~~~~~~~~~~~~g~~~~~~~~~~~~~GTtV~v~dLF~n~PvRrk 178 (677)
+.+++|+..+.|+|||||||+||++||+|+|+||++++..||++.|++|++....++++.++||+|+|+|||||+|+|+|
T Consensus 86 ~~~~~dl~~i~s~GfrGeaL~Si~avs~l~v~sr~~~~~~~~~~~~~~G~~~~~~~~~~~~~GTtV~v~~LF~n~P~R~k 165 (348)
T 3na3_A 86 LQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYRASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRK 165 (348)
T ss_dssp CCCC---------CCTTCHHHHHHHSSEEEEEEECTTCSSEEEEEEETTEESSCCEEECCCSEEEEEEESTTTTCHHHHH
T ss_pred cCcchhhhccccCCcCChHHHHhhcccEEEEEEEECCCCceEEEEEeCCEEeeeeeEecCCCCcEEEECcccccCchhhh
Confidence 99999999999999999999999999999999999999999999999999874456778899999999999999999999
Q ss_pred cccCCchhHHHHHHHHHHHHhcCCCeEEEEEECCeeeEEEEeCCCCCHHHHHHHHhChhhhccceEecccccCCCCCcce
Q 005789 179 TLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVF 258 (677)
Q Consensus 179 ~l~~~~~e~~~i~~~v~~yAl~~p~v~F~l~~~g~~~~~l~t~~~~s~~~~i~~i~G~~~~~~L~~i~~~~~~~~~~~~~ 258 (677)
+|++.+.|+.+|.++|++||++||+|+|+|.++|+....+++.+++++.+++.++||..++++|++++.+. +. .++
T Consensus 166 ~lk~~~~e~~~i~~~l~~~Al~~p~v~f~l~~~g~~~~~~~~~~~~~~~~~i~~i~G~~~~~~l~~v~~~~--~~--~~~ 241 (348)
T 3na3_A 166 ALKNPSEEYGKILEVVGRYSVHNAGISFSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEIGCED--KT--LAF 241 (348)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHHCTTCEEEEEETTCSSCSEECCTTCCHHHHHHHHHCHHHHTTEEEEEEEE--GG--GTE
T ss_pred hccccHHHHHHHHHHHHHHHhhCCCeEEEEEECCEEEEEeecCCCCCHHHHHHHHhChHhHhhcEEEEeec--CC--ccE
Confidence 99999999999999999999999999999999997666689999999999999999999999999998875 21 369
Q ss_pred EEEEEEeCCCCCCCCceEEEEEcCeecCChhHHHHHHHHHhhcCCCCCCceEEEEEEcCCCccccccCCCCCeEecCChh
Q 005789 259 KMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQE 338 (677)
Q Consensus 259 ~v~G~is~~~~~~~k~~q~ifIN~R~V~~~~l~kaI~~~y~~~lp~~~~P~~~L~i~i~p~~vDVNVhPtK~eV~F~~e~ 338 (677)
+++||||.|+++.++..||+|||||+|.++.|.+||+++|+.++|+++||+++|+|+|||+.|||||||+|+||+|.+|+
T Consensus 242 ~i~G~is~p~~~~~~~~q~~fVNgR~v~~~~l~~ai~~~y~~~l~~~~~P~~~L~l~~~p~~vDVNvhP~K~eV~f~~e~ 321 (348)
T 3na3_A 242 KMNGYISNANYSVKKCIFLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEE 321 (348)
T ss_dssp EEEEEEECSSCCBSSCEEEEEETTEECCCTTHHHHHHHHHHTTSCTTCBCEEEEEEECC---------------------
T ss_pred EEEEEEeCCccCCCcccEEEEECCeEecCHHHHHHHHHHHHHhCcCCCceEEEEEEEeChhheeeeeCCCcCEEEEcCHH
Confidence 99999999998877889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCccccccc
Q 005789 339 LIVEKIQSAVELKLRQSNDSRTYKEQT 365 (677)
Q Consensus 339 ~I~~~I~~~l~~~L~~~~~~r~~~~q~ 365 (677)
+|++.|+++|+++|...+++|+|.+|+
T Consensus 322 ~i~~~i~~~v~~~l~~~~~sr~f~~~~ 348 (348)
T 3na3_A 322 SILERVQQHIESKLLGSNSSRMYFTQT 348 (348)
T ss_dssp -CTHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHhcCCCcceeeccC
Confidence 999999999999999999999998764
|
| >3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* | Back alignment and structure |
|---|
| >1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* | Back alignment and structure |
|---|
| >3rbn_A DNA mismatch repair protein MLH1; structural genomics, structural genomics consortium, SGC, DN mismatch repair, endonucleases, protein binding; HET: DNA; 2.16A {Homo sapiens} | Back alignment and structure |
|---|
| >1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 | Back alignment and structure |
|---|
| >3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus} | Back alignment and structure |
|---|
| >1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 | Back alignment and structure |
|---|
| >3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A* | Back alignment and structure |
|---|
| >1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A | Back alignment and structure |
|---|
| >2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A | Back alignment and structure |
|---|
| >1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2 | Back alignment and structure |
|---|
| >2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A | Back alignment and structure |
|---|
| >4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A* | Back alignment and structure |
|---|
| >3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ... | Back alignment and structure |
|---|
| >3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A* | Back alignment and structure |
|---|
| >4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A* | Back alignment and structure |
|---|
| >1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A* | Back alignment and structure |
|---|
| >2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli} | Back alignment and structure |
|---|
| >3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A* | Back alignment and structure |
|---|
| >3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A* | Back alignment and structure |
|---|
| >2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A* | Back alignment and structure |
|---|
| >1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A* | Back alignment and structure |
|---|
| >2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A | Back alignment and structure |
|---|
| >3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A* | Back alignment and structure |
|---|
| >3ncv_A DNA mismatch repair protein MUTL; endonuclease, dimer, hydrolase; HET: DNA; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
| >2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} | Back alignment and structure |
|---|
| >2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} | Back alignment and structure |
|---|
| >1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* | Back alignment and structure |
|---|
| >1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* | Back alignment and structure |
|---|
| >1x9z_A DNA mismatch repair protein MUTL; alpha-beta fold, dimer, replication, signaling protein; HET: DNA MSE; 2.10A {Escherichia coli} SCOP: d.292.1.1 | Back alignment and structure |
|---|
| >2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A* | Back alignment and structure |
|---|
| >1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A* | Back alignment and structure |
|---|
| >3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1 | Back alignment and structure |
|---|
| >3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
| >4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A* | Back alignment and structure |
|---|
| >1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3 | Back alignment and structure |
|---|
| >1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A | Back alignment and structure |
|---|
| >3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
| >1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3 | Back alignment and structure |
|---|
| >1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A* | Back alignment and structure |
|---|
| >2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* | Back alignment and structure |
|---|
| >3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
| >1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A | Back alignment and structure |
|---|
| >3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A | Back alignment and structure |
|---|
| >4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} | Back alignment and structure |
|---|
| >3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis} | Back alignment and structure |
|---|
| >3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis} | Back alignment and structure |
|---|
| >1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A | Back alignment and structure |
|---|
| >2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A | Back alignment and structure |
|---|
| >2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* | Back alignment and structure |
|---|
| >1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* | Back alignment and structure |
|---|
| >3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* | Back alignment and structure |
|---|
| >3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} | Back alignment and structure |
|---|
| >2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* | Back alignment and structure |
|---|
| >3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A* | Back alignment and structure |
|---|
| >3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A | Back alignment and structure |
|---|
| >3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 677 | ||||
| d1b63a2 | 218 | d.122.1.2 (A:-2-216) DNA mismatch repair protein M | 2e-62 | |
| d1h7sa2 | 203 | d.122.1.2 (A:29-231) DNA mismatch repair protein P | 2e-51 | |
| d1b63a1 | 115 | d.14.1.3 (A:217-331) DNA mismatch repair protein M | 2e-20 | |
| d1h7sa1 | 134 | d.14.1.3 (A:232-365) DNA mismatch repair protein P | 3e-19 | |
| d2hkja3 | 219 | d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {A | 3e-18 |
| >d1b63a2 d.122.1.2 (A:-2-216) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]} Length = 218 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase family: DNA gyrase/MutL, N-terminal domain domain: DNA mismatch repair protein MutL species: Escherichia coli [TaxId: 562]
Score = 204 bits (521), Expect = 2e-62
Identities = 78/213 (36%), Positives = 125/213 (58%), Gaps = 1/213 (0%)
Query: 22 IHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHG 81
I L + N+IAAGEV++RP S VKELVENSLDA AT I++ ++ GG KLI++ D+G G
Sbjct: 5 IQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCG 64
Query: 82 IRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYR 141
I+ ++L + RH TSK++ +DL++I S+GFRGEALAS++ V +T+T+ T ++
Sbjct: 65 IKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEAWQ 124
Query: 142 VSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHH 201
M K A GT + V +LFYN ARRK L+ ++ I +++ R+A+
Sbjct: 125 AYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIALAR 184
Query: 202 TNVSFSCRKHGAARADVHSIATSS-RLDSIRTV 233
+V+ + +G ++ + + +
Sbjct: 185 FDVTINLSHNGKIVRQYRAVPEGGQKERRLGAI 217
|
| >d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Length = 203 | Back information, alignment and structure |
|---|
| >d1b63a1 d.14.1.3 (A:217-331) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]} Length = 115 | Back information, alignment and structure |
|---|
| >d1h7sa1 d.14.1.3 (A:232-365) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Length = 134 | Back information, alignment and structure |
|---|
| >d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Length = 219 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 677 | |||
| d1b63a2 | 218 | DNA mismatch repair protein MutL {Escherichia coli | 100.0 | |
| d1h7sa2 | 203 | DNA mismatch repair protein PMS2 {Human (Homo sapi | 100.0 | |
| d1b63a1 | 115 | DNA mismatch repair protein MutL {Escherichia coli | 99.95 | |
| d1h7sa1 | 134 | DNA mismatch repair protein PMS2 {Human (Homo sapi | 99.92 | |
| d2hkja3 | 219 | Topoisomerase VI-B subunit {Archaeon Sulfolobus sh | 99.89 | |
| d1x9za_ | 182 | DNA mismatch repair protein MutL {Escherichia coli | 99.58 | |
| d1s14a_ | 168 | Topoisomerase IV subunit B {Escherichia coli [TaxI | 99.44 | |
| d1ei1a2 | 219 | DNA gyrase B {Escherichia coli [TaxId: 562]} | 99.37 | |
| d2iwxa1 | 213 | HSP90 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.33 | |
| d1kija2 | 212 | DNA gyrase B {Thermus thermophilus [TaxId: 274]} | 99.32 | |
| d2gqpa1 | 227 | HSP90 {Dog (Canis familiaris) [TaxId: 9615]} | 99.14 | |
| d1uyla_ | 208 | HSP90 {Human (Homo sapiens) [TaxId: 9606]} | 99.11 | |
| d1pvga2 | 239 | DNA topoisomerase II {Baker's yeast (Saccharomyces | 98.81 | |
| d1ysra1 | 148 | Sensor-type histidine kinase PrrB {Mycobacterium t | 98.37 | |
| d1bxda_ | 161 | Histidine kinase domain of the osmosensor EnvZ {Es | 98.34 | |
| d1gkza2 | 193 | Branched-chain alpha-ketoacid dehydrogenase kinase | 98.23 | |
| d1jm6a2 | 190 | Pyruvate dehydrogenase kinase {Rat (Rattus norvegi | 98.23 | |
| d1id0a_ | 146 | Histidine kinase PhoQ domain {Escherichia coli [Ta | 98.19 | |
| d2c2aa2 | 161 | Sensor histidine kinase TM0853 {Thermotoga maritim | 98.1 | |
| d1th8a_ | 139 | Anti-sigma factor spoIIab {Bacillus stearothermoph | 97.86 | |
| d1y8oa2 | 125 | Pyruvate dehydrogenase kinase {Human (Homo sapiens | 97.84 | |
| d1r62a_ | 156 | Nitrogen regulation protein NtrB, C-terminal domai | 97.75 | |
| d1ixma_ | 179 | Sporulation response regulatory protein Spo0B {Bac | 97.44 |
| >d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1b63a1 d.14.1.3 (A:217-331) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1h7sa1 d.14.1.3 (A:232-365) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} | Back information, alignment and structure |
|---|
| >d1x9za_ d.292.1.1 (A:) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
| >d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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| >d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} | Back information, alignment and structure |
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| >d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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