Citrus Sinensis ID: 005905
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 670 | 2.2.26 [Sep-21-2011] | |||||||
| Q0WLC6 | 1089 | Pentatricopeptide repeat- | yes | no | 0.989 | 0.608 | 0.628 | 0.0 | |
| Q9SIC9 | 918 | Pentatricopeptide repeat- | no | no | 0.479 | 0.349 | 0.259 | 1e-29 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.568 | 0.510 | 0.272 | 2e-29 | |
| Q9FIT7 | 974 | Pentatricopeptide repeat- | no | no | 0.595 | 0.409 | 0.236 | 6e-29 | |
| Q9T0D6 | 566 | Pentatricopeptide repeat- | no | no | 0.505 | 0.598 | 0.227 | 1e-28 | |
| Q76C99 | 791 | Protein Rf1, mitochondria | N/A | no | 0.571 | 0.484 | 0.25 | 6e-28 | |
| Q9CAN5 | 614 | Pentatricopeptide repeat- | no | no | 0.505 | 0.552 | 0.266 | 2e-27 | |
| Q0WMY5 | 952 | Pentatricopeptide repeat- | no | no | 0.586 | 0.412 | 0.235 | 4e-27 | |
| Q9CA58 | 763 | Putative pentatricopeptid | no | no | 0.552 | 0.484 | 0.246 | 1e-26 | |
| Q9LYZ9 | 819 | Pentatricopeptide repeat- | no | no | 0.702 | 0.575 | 0.239 | 1e-26 |
| >sp|Q0WLC6|PP349_ARATH Pentatricopeptide repeat-containing protein At4g34830, chloroplastic OS=Arabidopsis thaliana GN=At4g34830/At4g34820 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 924 bits (2387), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/711 (62%), Positives = 545/711 (76%), Gaps = 48/711 (6%)
Query: 6 KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
++M QFP N + N E +YNRL+R GRI +CI LLED++++ LLDMDK+YHA
Sbjct: 381 ESMPQFPARNFELHNSNGRSPETSDAYNRLLRDGRIKDCISLLEDLDQRDLLDMDKIYHA 440
Query: 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
FF CK Q+A+KEAFRF KL+ NPT+STFNMLMSVCASS+D EGA VLRLVQE+G+ A
Sbjct: 441 SFFKACKKQRAVKEAFRFTKLILNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTA 500
Query: 126 DCKLYTTLITTCAKSGKVDAMFE------------------------------------- 148
DCKLYTTLI++CAKSGKVDAMFE
Sbjct: 501 DCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAY 560
Query: 149 ------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
NVKPDRVVFNALI+ACGQSGAVDRAFDVLAEM AE HP+DPDHI+IGALMKAC
Sbjct: 561 GILRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACC 620
Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
NAGQV+RA+EVY+MIHKY I+GTPEVYTIA+N CS++GDW+FACS+Y DM +K V PDEV
Sbjct: 621 NAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEV 680
Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
F SALID AGHA ++ AF ILQ+AK+QGI +G ISYSSLMGAC NAK+W+KALELYE +
Sbjct: 681 FFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKI 740
Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
KSIKL+PT+STMNALITALC+G+QLPK ME L ++K+LGL PNTITYS+L++A ERKDD
Sbjct: 741 KSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNTITYSMLMLASERKDDF 800
Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 442
EV LLSQAK DGV PNL+M +CI +C RR+EKA E V+SF SGRPQIENKWTS+
Sbjct: 801 EVSFKLLSQAKGDGVSPNLIMCRCITSLCKRRFEKACAGGEPVVSFKSGRPQIENKWTSM 860
Query: 443 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 502
ALMVYRE I GT+PT EVVS+VLGCLQLP++A +R+RL+ LG++ + K+ N+ L+D
Sbjct: 861 ALMVYRETISGGTVPTTEVVSQVLGCLQLPHDAALRDRLISTLGINISSQKQHNIFPLVD 920
Query: 503 GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRLA 562
GFGEYDPRAFSLLEEA S G++P VSF +IP+ D +L + A+VYLLTI KGL+HRLA
Sbjct: 921 GFGEYDPRAFSLLEEATSLGVLPSVSFNKIPLFFDTTELPKNVAEVYLLTIFKGLKHRLA 980
Query: 563 AGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQGNGSYGKIRI 622
AGAK+P++N+++ +++ +I + GEKTID+ R Q I ALLRRL +PY S ++RI
Sbjct: 981 AGAKIPHINLIISIQEKEIRTPEGEKTIDLTGRVGQEIGALLRRLDIPYHRKDS--RLRI 1038
Query: 623 NGLALKRWFQPKLASPFS-GKPGELSSLQ--LGKFITHQQRNIRTGNLSLE 670
NG++LK WFQPKL SPFS GKPG+L S Q LG I+ QQR+IR GNLSLE
Sbjct: 1039 NGVSLKNWFQPKLDSPFSGGKPGDLRSSQVPLGNQISRQQRSIRLGNLSLE 1089
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 132 bits (331), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/332 (25%), Positives = 155/332 (46%), Gaps = 11/332 (3%)
Query: 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------- 142
T+ F+ L+S S E A V ++E GL+ + Y +I C K G
Sbjct: 267 TVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKF 326
Query: 143 VDAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
D M N V+PDR+ FN+L+ C + G + A ++ EM ++ D + L+ A
Sbjct: 327 FDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNR--RIEQDVFSYNTLLDAI 384
Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
GQ+D A E+ + I Y+ I+ ++ G ++ A +++ +M G+ D
Sbjct: 385 CKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDR 444
Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
V + L+ G+ E A +IL+E + GI +++Y++L+G + + +++
Sbjct: 445 VSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTE 504
Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
MK + P + T + LI G + ME+ + KS GL + + YS L+ A +
Sbjct: 505 MKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGL 564
Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
V + L+ + ++G+ PN+V + II R
Sbjct: 565 VGSAVSLIDEMTKEGISPNVVTYNSIIDAFGR 596
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 131 bits (330), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 111/408 (27%), Positives = 191/408 (46%), Gaps = 27/408 (6%)
Query: 25 VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
VS + +YN LIR G I + L + ME KG L Y+ CK +K I +
Sbjct: 201 VSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRK-IDDG 259
Query: 81 FRFFKLVP----NPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
F+ + + P L ++N++++ +C + E +F VL + G D Y TLI
Sbjct: 260 FKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSF-VLTEMNRRGYSLDEVTYNTLIK 318
Query: 136 TCAKSGK--------VDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
K G + + + P + + +LI + ++G ++RA + L +M V +
Sbjct: 319 GYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQM--RVRGL 376
Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEF 244
P+ T L+ + G ++ E Y+++ + N G +P V Y IN TG E
Sbjct: 377 CPNERTYTTLVDGFSQKGYMN---EAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMED 433
Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
A +V +DM +KG+ PD V S ++ + V+ A + +E +GI I+YSSL+
Sbjct: 434 AIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQ 493
Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
+ ++A +LYE M + L P T ALI A C L K +++ ++M G+ P
Sbjct: 494 GFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLP 553
Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
+ +TYS+L+ ++ LL + + +P+ V + +I CS
Sbjct: 554 DVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCS 601
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 129 bits (325), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 100/422 (23%), Positives = 192/422 (45%), Gaps = 23/422 (5%)
Query: 18 HANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS 73
H +H ++ + + Y+ I ++G + + L + M GL+ + Y + C+
Sbjct: 336 HEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCR- 394
Query: 74 QKAIKEAFRFF------KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC 127
+K +++ + +V +P T+ ++ SS D +GA+ +++ + +G + +
Sbjct: 395 EKNVRQGYELLVEMKKRNIVISPY--TYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNV 452
Query: 128 KLYTTLITTCAKSGKV-DAMF-------ENVKPDRVVFNALITACGQSGAVDRAFDVLAE 179
+YTTLI T ++ + DAM + + PD +N+LI ++ +D A L E
Sbjct: 453 VIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVE 512
Query: 180 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 239
M + + P+ T GA + A + A + K + + + + T IN +
Sbjct: 513 MVE--NGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKK 570
Query: 240 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 299
G ACS Y M +G++ D + L++ KV+ A EI +E + +GI+ + SY
Sbjct: 571 GKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSY 630
Query: 300 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359
L+ S N QKA +++ M L P V N L+ C ++ K E+L +M
Sbjct: 631 GVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSV 690
Query: 360 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKAR 419
GL PN +TY ++ + D+ L + K G++P+ ++ ++ C R + R
Sbjct: 691 KGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVER 750
Query: 420 TL 421
+
Sbjct: 751 AI 752
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690 OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/361 (22%), Positives = 170/361 (47%), Gaps = 22/361 (6%)
Query: 64 HARFF------NVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRL 117
H++FF + + K FR ++++ N + + ++ +S+ ++ + F
Sbjct: 71 HSQFFTSSSLLHYLTESETSKTKFRLYEVIINSYVQSQSLNLSISYFNEMVDNGFVP--- 127
Query: 118 VQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVV-----FNALITACGQSGAVDR 172
++C Y + S F N +VV F LI C ++G +++
Sbjct: 128 ------GSNCFNYLLTFVVGSSSFNQWWSFFNENKSKVVLDVYSFGILIKGCCEAGEIEK 181
Query: 173 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 232
+FD+L E+ P+ + L+ C G++++A++++ + K + YT+
Sbjct: 182 SFDLLIELTE--FGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVL 239
Query: 233 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292
IN + G + +Y+ M + GV P+ + +++ G+ + AF++ E + +G+
Sbjct: 240 INGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGV 299
Query: 293 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 352
S I++Y++L+G +A ++ + MKS + P + T N LI C +L K +
Sbjct: 300 SCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALS 359
Query: 353 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
+ D+KS GL P+ +TY+IL+ RK D ++ + +E G+ P+ V + +I +
Sbjct: 360 LCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFA 419
Query: 413 R 413
R
Sbjct: 420 R 420
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 126 bits (316), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 99/396 (25%), Positives = 182/396 (45%), Gaps = 13/396 (3%)
Query: 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
DV N ++G + +M +G+L Y++ +CK+Q K
Sbjct: 195 DVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVL 254
Query: 84 FKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
+V N P T+N ++ SS + A L+ ++ G++ D Y+ L+ K+
Sbjct: 255 NTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKN 314
Query: 141 GK-------VDAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
G+ D+M + +KP+ + L+ GA+ +L M + + PDH
Sbjct: 315 GRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVR--NGIHPDHY 372
Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
L+ A A G+VD+A V+ + + + Y I ++G E A ++ M
Sbjct: 373 VFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQM 432
Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
+G+ P + ++LI K E A E++ E ++GI + I ++S++ +
Sbjct: 433 IDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRV 492
Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
++ +L+E M I +KP V T N LI C ++ + M++LS M S+GL PNT+TYS L
Sbjct: 493 IESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTL 552
Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
+ + +E L+L + + GV P+++ + I+
Sbjct: 553 INGYCKISRMEDALVLFKEMESSGVSPDIITYNIIL 588
|
Reduces the expression of the cytoplasmic male sterility (CMS)-associated mitochondrial gene ORF79, encoding a cytotoxic peptide. Can restore male fertility by blocking ORF79 production via endonucleolytic cleavage of dicistronic ATP6/ORF79 mRNA. Promotes the editing of ATP6 mRNAs independently of its cleavage function. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/357 (26%), Positives = 169/357 (47%), Gaps = 18/357 (5%)
Query: 82 RFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
+ KL P++ T N L++ C ++ SE V ++V E G + D +TTL+ +
Sbjct: 125 KMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMV-EMGYQPDTVTFTTLVHGLFQH 183
Query: 141 GKVD---AMFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
K A+ E + +PD V + A+I + G D A ++L +M E ++ D +
Sbjct: 184 NKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKM--EKGKIEADVV 241
Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYD 250
++ + VD A ++ + I+ P+V+T + I+C G W A +
Sbjct: 242 IYSTVIDSLCKYRHVDDALNLFTEMDNKGIR--PDVFTYSSLISCLCNYGRWSDASRLLS 299
Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
DM ++ + P+ V ++LID GK+ A ++ E + I I++Y+SL+
Sbjct: 300 DMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHD 359
Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
+A +++ M S P V T N LI C ++ ME+ DM GL NT+TY+
Sbjct: 360 RLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYT 419
Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 425
L+ + D + M+ Q DGV PN++ + ++ G+C + EKA + E++
Sbjct: 420 TLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 476
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810, chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 123 bits (309), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 98/416 (23%), Positives = 184/416 (44%), Gaps = 23/416 (5%)
Query: 19 ANYAHDVSEQLHS------YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHAR-- 66
A+Y D ++++H Y ++I + + L+ +ME +G+ +YH
Sbjct: 398 ADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMD 457
Query: 67 -FFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
+ V +K + R + PT+ T+ L+++ A +V R+++E G+K
Sbjct: 458 GYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKH 517
Query: 126 DCKLYTTLITTCAK---SGKVDAMFENV-----KPDRVVFNALITACGQSGAVDRAFDVL 177
+ K Y+ +I K A+FE++ KPD +++N +I+A G +DRA +
Sbjct: 518 NLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTV 577
Query: 178 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 237
EM H P T ++ A +G + R+ EV+ M+ + T + IN
Sbjct: 578 KEMQKLRH--RPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLV 635
Query: 238 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 297
+ E A + D+MT GV +E + ++ G AFE +N+G+ V I
Sbjct: 636 EKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIF 695
Query: 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
+Y +L+ AC + Q AL + + M + + N LI + + +++ M
Sbjct: 696 TYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQM 755
Query: 358 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
K G+ P+ TY+ + AC + D+ + + + GV PN+ + +I +R
Sbjct: 756 KKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWAR 811
|
May play a role in the plastid ribosome biogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580 OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 122 bits (305), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 96/389 (24%), Positives = 176/389 (45%), Gaps = 19/389 (4%)
Query: 22 AHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK-- 75
A VS L ++N+L+R +G + EC LL+ + ++G+L Y+ +C+ +
Sbjct: 209 ASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELD 268
Query: 76 -AIKEAFRFFKLVPNPTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
A++ + P P + T+N ++ +C +SK E + ++V E GL+ D Y TL
Sbjct: 269 GAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNE-GLEPDSYTYNTL 327
Query: 134 ITTCAKSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
I K G V DA+F PD+ + +LI G +RA + E A
Sbjct: 328 IAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNE--ALGK 385
Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
+ P+ I L+K +N G + A ++ + + + + + I +N + G A
Sbjct: 386 GIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDA 445
Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
+ M KG PD + LI K+E A EIL + G+ + +Y+SL+
Sbjct: 446 DGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNG 505
Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
++ +E Y+ M P + T N L+ +LC +L + + +L +MK+ + P+
Sbjct: 506 LCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPD 565
Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKE 394
+T+ L+ + D++ L + +E
Sbjct: 566 AVTFGTLIDGFCKNGDLDGAYTLFRKMEE 594
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 122 bits (305), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 123/514 (23%), Positives = 218/514 (42%), Gaps = 43/514 (8%)
Query: 25 VSEQLHSYNRLI---RQGRI-SECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
++ ++YN LI ++G + E + E+M+ G DKV + +V KEA
Sbjct: 275 IAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGF-SYDKVTYNALLDVYGKSHRPKEA 333
Query: 81 FRFF-KLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
+ ++V N P++ T+N L+S A + A ++ + E G K D YTTL++
Sbjct: 334 MKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSG 393
Query: 137 CAKSGKVDA---MFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
++GKV++ +FE + KP+ FNA I G G + E+N V +
Sbjct: 394 FERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEIN--VCGLS 451
Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
PD +T L+ G V+K + + E + I+ S+ G +E A +V
Sbjct: 452 PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTV 511
Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
Y M GV PD + ++ G E + ++L E ++ ++Y SL+ A +N
Sbjct: 512 YRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYAN 571
Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
K L E + S ++P + L+ D LP+ S++K G P+ T
Sbjct: 572 GKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITT 631
Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR-----------RYEK 417
+ ++ R+ V +L KE G P++ + ++ M SR R
Sbjct: 632 LNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREIL 691
Query: 418 ARTLNEHVLSFNSG-RPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNAD 476
A+ + ++S+N+ N A ++ E +G +P V + +G Y AD
Sbjct: 692 AKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGS----YAAD 747
Query: 477 IRERLVENLGVSADALK------RSNLCSLIDGF 504
E +GV +K ++ S++DG+
Sbjct: 748 --SMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGY 779
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 670 | ||||||
| 255586885 | 1129 | pentatricopeptide repeat-containing prot | 0.998 | 0.592 | 0.714 | 0.0 | |
| 359474892 | 1115 | PREDICTED: pentatricopeptide repeat-cont | 0.992 | 0.596 | 0.697 | 0.0 | |
| 297744686 | 1550 | unnamed protein product [Vitis vinifera] | 0.992 | 0.429 | 0.697 | 0.0 | |
| 224080562 | 665 | predicted protein [Populus trichocarpa] | 0.925 | 0.932 | 0.709 | 0.0 | |
| 449458656 | 1108 | PREDICTED: pentatricopeptide repeat-cont | 0.994 | 0.601 | 0.642 | 0.0 | |
| 357473771 | 1173 | Pentatricopeptide repeat-containing prot | 0.941 | 0.537 | 0.662 | 0.0 | |
| 356529805 | 1092 | PREDICTED: pentatricopeptide repeat-cont | 0.941 | 0.577 | 0.655 | 0.0 | |
| 356544435 | 1071 | PREDICTED: pentatricopeptide repeat-cont | 0.941 | 0.589 | 0.649 | 0.0 | |
| 110741791 | 1089 | hypothetical protein [Arabidopsis thalia | 0.989 | 0.608 | 0.628 | 0.0 | |
| 110740372 | 1089 | hypothetical protein [Arabidopsis thalia | 0.989 | 0.608 | 0.628 | 0.0 |
| >gi|255586885|ref|XP_002534048.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223525928|gb|EEF28334.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1070 bits (2766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 510/714 (71%), Positives = 587/714 (82%), Gaps = 45/714 (6%)
Query: 1 MQDGGKNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMD 60
+QD N+ +FPYPNG H+ +EQ+H YNRL+R GR++EC+DLLEDMER+GLLDM
Sbjct: 415 IQDEHTNLPEFPYPNGVHSTNKDHKAEQVHGYNRLLRDGRLAECVDLLEDMERRGLLDMS 474
Query: 61 KVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE 120
K+YHA+FF +CK QKA+KEAFRF KLVPNP+LSTFNMLMSVC+SS+DS+GAF+VLRL Q
Sbjct: 475 KIYHAKFFKICKIQKAVKEAFRFCKLVPNPSLSTFNMLMSVCSSSQDSDGAFEVLRLAQG 534
Query: 121 AGLKADCKLYTTLITTCAKSGKVDAMFE-------------------------------- 148
AGLKADCKLYTTLI+TCAKSGKVDAMFE
Sbjct: 535 AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEPNVHTYGSLIDGCAKAGQMAK 594
Query: 149 -----------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
NVKPDRVVFNALITACGQSGAVDRAFDVLAEM AE HP+DPDHIT+GAL
Sbjct: 595 AFGAYGILRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMGAETHPIDPDHITVGAL 654
Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
MKACA AGQVDRA+EVY M+HKYNIKGTPEVYTIA+N CSQTGDWEFA SVYDDMT+KGV
Sbjct: 655 MKACAKAGQVDRAKEVYNMLHKYNIKGTPEVYTIAVNFCSQTGDWEFARSVYDDMTRKGV 714
Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
PDE+FLSAL+D AGHAG V+ AFE LQEA+ QG +GI+ YSSLMGACSNAKNWQKALE
Sbjct: 715 APDEMFLSALVDVAGHAGLVDIAFETLQEARTQGTQLGIVPYSSLMGACSNAKNWQKALE 774
Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
LYE +K+IKLKPTVSTMNAL+TALCDGDQL K +E LS+MKS GLCPN +TYSILLVA E
Sbjct: 775 LYEDIKAIKLKPTVSTMNALMTALCDGDQLQKALETLSEMKSFGLCPNIVTYSILLVASE 834
Query: 378 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIEN 437
RKDD++ G MLLSQAKED + P +M+KCIIGMC RRY+KA +L E +LSF+SGRPQI+N
Sbjct: 835 RKDDLDAGDMLLSQAKEDCITPTFLMYKCIIGMCLRRYKKACSLGESILSFDSGRPQIKN 894
Query: 438 KWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNL 497
+WTS AL VYRE I AG PT+EVVS+VLGCLQLP +A ++ RLVENLGV+AD K SNL
Sbjct: 895 EWTSRALTVYRETIAAGEKPTMEVVSQVLGCLQLPCDASLKGRLVENLGVTADPSKFSNL 954
Query: 498 CSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGL 557
C+L+DGFGEYDPRAFSLLEEAAS G VPC SFKE P+V+DA+ L+ H A+VYLLTILKGL
Sbjct: 955 CALVDGFGEYDPRAFSLLEEAASLGTVPCASFKESPIVMDAKLLQSHIAEVYLLTILKGL 1014
Query: 558 RHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQGNGSY 617
+HRLAAGAKLPN+ ILLP E TQI ++ GEKTI++A R +Q +A+LLRRLGLPYQGN SY
Sbjct: 1015 KHRLAAGAKLPNITILLPTEMTQIKTLKGEKTINLAGRISQDVASLLRRLGLPYQGNESY 1074
Query: 618 GKIRINGLALKRWFQPKLASPFSGKPGELS-SL-QLGKFITHQQRNIRTGNLSL 669
GKIRING++L+RW QPKLASPFSGKP ELS SL ++GK ITHQQRNIRTGNLSL
Sbjct: 1075 GKIRINGISLRRWLQPKLASPFSGKPEELSFSLSRIGKGITHQQRNIRTGNLSL 1128
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359474892|ref|XP_002276432.2| PREDICTED: pentatricopeptide repeat-containing protein At4g34830, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1030 bits (2663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 495/710 (69%), Positives = 578/710 (81%), Gaps = 45/710 (6%)
Query: 6 KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
+N+ QFP NG + SE+ +YNRL+ +GR+S+CI LLEDME+ GLLDMDKVYHA
Sbjct: 406 RNLSQFPLSNGMTVKEKYHDSEKFSAYNRLLSEGRLSDCIQLLEDMEKMGLLDMDKVYHA 465
Query: 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
+FF +C+SQKA+ EAFRF KL+P PTLSTFNMLMSVCA+S+DS GAFQVL+LV+EAGLKA
Sbjct: 466 KFFKICRSQKAVTEAFRFAKLIPTPTLSTFNMLMSVCATSQDSAGAFQVLQLVREAGLKA 525
Query: 126 DCKLYTTLITTCAKSGKVDAMFE------------------------------------- 148
DCKLYTTLI+TCAKSGKVDAMFE
Sbjct: 526 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAEVEPNVHTYGALIDGCGRAGQVAKAFGAY 585
Query: 149 ------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
V+PDRVVFNALITACGQSGAVDRAFDVLAEM AE P+DPDHIT+GAL+KAC
Sbjct: 586 GIMRSKKVEPDRVVFNALITACGQSGAVDRAFDVLAEMRAETQPIDPDHITVGALIKACT 645
Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
NAGQVDRAREVYKMI +YNIKGTPEVYTIA++ SQ GDWEFA SVY DMT+KGV+PDE+
Sbjct: 646 NAGQVDRAREVYKMIDQYNIKGTPEVYTIAVSSHSQIGDWEFAYSVYTDMTRKGVVPDEM 705
Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
FLSALID AGHAGK++AAFE++QEA+ QGI +GI+SYSSLMGACSNAKNWQKALELY +
Sbjct: 706 FLSALIDVAGHAGKLDAAFEVIQEARIQGIPLGIVSYSSLMGACSNAKNWQKALELYVDI 765
Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
KS+KL PTVSTMNALITALC+G+QL K MEVLSDMK GLCPNTITYSILLVA E+KDD+
Sbjct: 766 KSMKLNPTVSTMNALITALCEGEQLEKAMEVLSDMKRAGLCPNTITYSILLVASEKKDDI 825
Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 442
+VGLM+LSQA++D V PNLVM +C++GMC RR+EKA L E VLSFNSGRPQI+NKWTS
Sbjct: 826 DVGLMILSQARKDSVAPNLVMCRCLVGMCLRRFEKACALGEPVLSFNSGRPQIDNKWTSS 885
Query: 443 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 502
ALMVYRE + AG IPT+E++S+VLGCLQ P + +R RL+ENLGVSADA +RSNLCSLID
Sbjct: 886 ALMVYRETVSAGVIPTMELLSQVLGCLQFPRDVSLRNRLIENLGVSADASRRSNLCSLID 945
Query: 503 GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRLA 562
GFGEYD RAFSLLEEAAS G+V CVSFK+ PV+VD R+L+I A+VYLLT+LKGL+HRLA
Sbjct: 946 GFGEYDSRAFSLLEEAASLGVVSCVSFKKSPVIVDTRRLQIRIAEVYLLTVLKGLKHRLA 1005
Query: 563 AGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQGNGSYGKIRI 622
AGAKLP++ ILLP E TQ+++ GEK I++A R +QA+A++LRRLGLPYQGN S GKIRI
Sbjct: 1006 AGAKLPSMTILLPTETTQVLAPKGEKAINLAGRISQAVASMLRRLGLPYQGNESRGKIRI 1065
Query: 623 NGLALKRWFQPKLASPFSGKPGELSSLQ--LGKFITHQQRNIRTGNLSLE 670
NGLA +RWFQPKLA PFSGK ELSS Q LG I+ QQR IRTGNLSL+
Sbjct: 1066 NGLATRRWFQPKLAGPFSGKVDELSSSQSRLGTGISLQQRKIRTGNLSLD 1115
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297744686|emb|CBI37948.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1030 bits (2662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 495/710 (69%), Positives = 578/710 (81%), Gaps = 45/710 (6%)
Query: 6 KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
+N+ QFP NG + SE+ +YNRL+ +GR+S+CI LLEDME+ GLLDMDKVYHA
Sbjct: 841 RNLSQFPLSNGMTVKEKYHDSEKFSAYNRLLSEGRLSDCIQLLEDMEKMGLLDMDKVYHA 900
Query: 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
+FF +C+SQKA+ EAFRF KL+P PTLSTFNMLMSVCA+S+DS GAFQVL+LV+EAGLKA
Sbjct: 901 KFFKICRSQKAVTEAFRFAKLIPTPTLSTFNMLMSVCATSQDSAGAFQVLQLVREAGLKA 960
Query: 126 DCKLYTTLITTCAKSGKVDAMFE------------------------------------- 148
DCKLYTTLI+TCAKSGKVDAMFE
Sbjct: 961 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAEVEPNVHTYGALIDGCGRAGQVAKAFGAY 1020
Query: 149 ------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
V+PDRVVFNALITACGQSGAVDRAFDVLAEM AE P+DPDHIT+GAL+KAC
Sbjct: 1021 GIMRSKKVEPDRVVFNALITACGQSGAVDRAFDVLAEMRAETQPIDPDHITVGALIKACT 1080
Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
NAGQVDRAREVYKMI +YNIKGTPEVYTIA++ SQ GDWEFA SVY DMT+KGV+PDE+
Sbjct: 1081 NAGQVDRAREVYKMIDQYNIKGTPEVYTIAVSSHSQIGDWEFAYSVYTDMTRKGVVPDEM 1140
Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
FLSALID AGHAGK++AAFE++QEA+ QGI +GI+SYSSLMGACSNAKNWQKALELY +
Sbjct: 1141 FLSALIDVAGHAGKLDAAFEVIQEARIQGIPLGIVSYSSLMGACSNAKNWQKALELYVDI 1200
Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
KS+KL PTVSTMNALITALC+G+QL K MEVLSDMK GLCPNTITYSILLVA E+KDD+
Sbjct: 1201 KSMKLNPTVSTMNALITALCEGEQLEKAMEVLSDMKRAGLCPNTITYSILLVASEKKDDI 1260
Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 442
+VGLM+LSQA++D V PNLVM +C++GMC RR+EKA L E VLSFNSGRPQI+NKWTS
Sbjct: 1261 DVGLMILSQARKDSVAPNLVMCRCLVGMCLRRFEKACALGEPVLSFNSGRPQIDNKWTSS 1320
Query: 443 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 502
ALMVYRE + AG IPT+E++S+VLGCLQ P + +R RL+ENLGVSADA +RSNLCSLID
Sbjct: 1321 ALMVYRETVSAGVIPTMELLSQVLGCLQFPRDVSLRNRLIENLGVSADASRRSNLCSLID 1380
Query: 503 GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRLA 562
GFGEYD RAFSLLEEAAS G+V CVSFK+ PV+VD R+L+I A+VYLLT+LKGL+HRLA
Sbjct: 1381 GFGEYDSRAFSLLEEAASLGVVSCVSFKKSPVIVDTRRLQIRIAEVYLLTVLKGLKHRLA 1440
Query: 563 AGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQGNGSYGKIRI 622
AGAKLP++ ILLP E TQ+++ GEK I++A R +QA+A++LRRLGLPYQGN S GKIRI
Sbjct: 1441 AGAKLPSMTILLPTETTQVLAPKGEKAINLAGRISQAVASMLRRLGLPYQGNESRGKIRI 1500
Query: 623 NGLALKRWFQPKLASPFSGKPGELSSLQ--LGKFITHQQRNIRTGNLSLE 670
NGLA +RWFQPKLA PFSGK ELSS Q LG I+ QQR IRTGNLSL+
Sbjct: 1501 NGLATRRWFQPKLAGPFSGKVDELSSSQSRLGTGISLQQRKIRTGNLSLD 1550
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224080562|ref|XP_002306163.1| predicted protein [Populus trichocarpa] gi|222849127|gb|EEE86674.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 983 bits (2542), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/665 (70%), Positives = 549/665 (82%), Gaps = 45/665 (6%)
Query: 51 MERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEG 110
MER+GLLDM+KVYH +FF +C+SQKA+KEAFRF KLV NPTLSTFNMLMSVCA+S++S G
Sbjct: 1 MERRGLLDMNKVYHVKFFKLCRSQKAVKEAFRFCKLVQNPTLSTFNMLMSVCATSQNSAG 60
Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE---------------------- 148
AF+VL+L + GLKADCKLYTTLI+TCAKSGKVDAMFE
Sbjct: 61 AFEVLQLAKAVGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEPNVHTYGALID 120
Query: 149 ---------------------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
NVKPDRVVFNALITACGQSGAVDRAFDVLAEM E P+
Sbjct: 121 GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMTGEAQPI 180
Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
DPDHIT+GAL+KAC NAGQVDRA+EVY M+HKYNIKGTPEVYTIAIN CSQ GDWEFAC
Sbjct: 181 DPDHITVGALIKACTNAGQVDRAQEVYNMVHKYNIKGTPEVYTIAINSCSQIGDWEFACK 240
Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
V+DDMT+KGV+PDE+FLSALID AGHAGK++AAFEI+QEAK +G +GII YSSLMGAC
Sbjct: 241 VFDDMTRKGVVPDEMFLSALIDVAGHAGKMDAAFEIIQEAKAKGAQLGIIPYSSLMGACC 300
Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
NAKNWQK LELYE +KS+K+KPTV+TMNALITALCDGDQLPK +EVLS+MK+ GL PNTI
Sbjct: 301 NAKNWQKGLELYEDIKSMKIKPTVATMNALITALCDGDQLPKALEVLSEMKAWGLRPNTI 360
Query: 368 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLS 427
TYSIL VA ERKDD+E GLMLLSQAK+D V P L+M KCII MC R++E A TL E VLS
Sbjct: 361 TYSILSVASERKDDLEAGLMLLSQAKKDCVAPTLIMSKCIISMCLRKFESACTLGEAVLS 420
Query: 428 FNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGV 487
FNSGR QIENKWTS+ALMVYR + AG PT+E+VS+VLGCLQ+P +A ++ RLVENLGV
Sbjct: 421 FNSGRAQIENKWTSVALMVYRGTMAAGEKPTIELVSQVLGCLQIPCDATLKNRLVENLGV 480
Query: 488 SADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAK 547
+A + + SNLCSL+DGFGEYDPRAFSLLEEAA+ GIVPCVSFKE P+ +DA++L+IH A+
Sbjct: 481 TAVSSRYSNLCSLVDGFGEYDPRAFSLLEEAAALGIVPCVSFKESPITMDAKQLQIHIAE 540
Query: 548 VYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRL 607
VY LTILKGL+HRLAAGAKLPNV ILLPVEK Q++++ GEKTI++A R ++A+A+LLRRL
Sbjct: 541 VYFLTILKGLKHRLAAGAKLPNVTILLPVEKAQVITLEGEKTINVAGRISRAVASLLRRL 600
Query: 608 GLPYQGNGSYGKIRINGLALKRWFQPKLASPFSGKPGELSS--LQLGKFITHQQRNIRTG 665
GLPYQGN SYGKIRING++L+RW QPKL SPFSGKPGE S+ +LGK I+ QQRNIRTG
Sbjct: 601 GLPYQGNESYGKIRINGISLRRWLQPKLDSPFSGKPGEWSTSLSRLGKGISFQQRNIRTG 660
Query: 666 NLSLE 670
+ SLE
Sbjct: 661 DFSLE 665
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449458656|ref|XP_004147063.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 947 bits (2447), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/711 (64%), Positives = 566/711 (79%), Gaps = 45/711 (6%)
Query: 5 GKNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYH 64
GK + P+PNGKH +Y + +Q SYN+ ++ GR+ +CI +L+DME++G+LDM+K+YH
Sbjct: 398 GKVVNGLPHPNGKHVHYKNLDVDQYKSYNQCLKGGRLHDCIRILQDMEKEGILDMNKIYH 457
Query: 65 ARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
+FFN+CKS+KA++EAF++ L+ NPTLSTFNMLMSVCASS+DSE AFQV+RLVQEAG+K
Sbjct: 458 GKFFNICKSKKAVQEAFQYTALIQNPTLSTFNMLMSVCASSQDSERAFQVVRLVQEAGMK 517
Query: 125 ADCKLYTTLITTCAKSGKVDAMFE------------------------------------ 148
ADCKLYTTLI+TC KSGKVDAMFE
Sbjct: 518 ADCKLYTTLISTCGKSGKVDAMFEVFHRMVNAGVEPNVHTYGALIDGCARAAQVAKAFGV 577
Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
NVKPDRVVFNALITACGQSGAVDRAFDVLAEM AE+HP++PDHITIGALMKAC
Sbjct: 578 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMGAELHPIEPDHITIGALMKAC 637
Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
ANAGQVDRAREVYKMIH Y IKGTPEVYTIA+NCCSQ+ DW+FA ++Y DMT+KGV PDE
Sbjct: 638 ANAGQVDRAREVYKMIHDYKIKGTPEVYTIAVNCCSQSCDWDFASNIYQDMTRKGVQPDE 697
Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
+FLSALID AGHAGK++AAFE+L EAK GI VGI+SYSSLMGACSNAKNWQKAL LYE
Sbjct: 698 IFLSALIDVAGHAGKLDAAFEVLGEAKTLGIRVGIVSYSSLMGACSNAKNWQKALALYED 757
Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
+KS+KL+ TVST+NALITAL DG+QL M++L++MK LGL PN ITYSIL A +R +D
Sbjct: 758 LKSMKLRLTVSTVNALITALSDGEQLQMAMDILTEMKELGLSPNNITYSILTAASDRNND 817
Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTS 441
+E+ LMLLSQAKEDG++P L M++CIIGMC RR +L+ ++S +S PQ+++KWT+
Sbjct: 818 LEIALMLLSQAKEDGIVPTLTMYRCIIGMCLRRIADPSSLDRPLMSLDSTLPQVDSKWTA 877
Query: 442 LALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLI 501
AL VYRE I AG +P+++V+S+VLGCLQ+P++ ++ RL+EN+GVSAD+ + S+LCSLI
Sbjct: 878 QALKVYREIIEAGIVPSIDVLSQVLGCLQIPHDPALKSRLIENIGVSADSSRSSSLCSLI 937
Query: 502 DGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRL 561
DGFGEYDPRAFSL EEAAS G+ P VS K P+VVDA++L+IHTA+VYLLT+LKGL+HRL
Sbjct: 938 DGFGEYDPRAFSLFEEAASLGVAPFVSLKGNPIVVDAKELQIHTAEVYLLTVLKGLKHRL 997
Query: 562 AAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQGNGSYGKIR 621
AAG++LPN+ ILL E T+I+ GE+TI+++ R QA+AALLRRLGLPYQGN S GKIR
Sbjct: 998 AAGSRLPNIMILLSNETTEILFSKGERTINLSGRVGQAVAALLRRLGLPYQGNESSGKIR 1057
Query: 622 INGLALKRWFQPKLASPFSGKPGELSSLQ--LGKFITHQQRNIRTGNLSLE 670
INGLAL+RW QPKL+ SGKPGE + Q L K I+HQQR+IR GNLSL+
Sbjct: 1058 INGLALRRWLQPKLSDSLSGKPGEFGTFQSRLRKGISHQQRDIRIGNLSLD 1108
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357473771|ref|XP_003607170.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355508225|gb|AES89367.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 937 bits (2421), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/676 (66%), Positives = 544/676 (80%), Gaps = 45/676 (6%)
Query: 40 RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLM 99
R+ EC++LL+DME KGLLDM KVYHA+FFN+CK QKA+ EAF + +L+PNPTLSTFNMLM
Sbjct: 498 RLCECVELLKDMEMKGLLDMTKVYHAKFFNICKKQKAVNEAFDYVRLIPNPTLSTFNMLM 557
Query: 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE----------- 148
SVCASS+DSEGAFQV++L+++A L DCKLYTTLI+TC K GKVD MFE
Sbjct: 558 SVCASSQDSEGAFQVIQLLKDARLDPDCKLYTTLISTCGKCGKVDLMFEVFHKMVNSGVE 617
Query: 149 --------------------------------NVKPDRVVFNALITACGQSGAVDRAFDV 176
NVK DRVVFNALI AC QSGA+ RAFDV
Sbjct: 618 PNVHTYGALIDGCARAGQVAKAFGAYGIMRSKNVKADRVVFNALIAACAQSGAMARAFDV 677
Query: 177 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 236
+AEM AE+ P+ PDH+T G LMKACA AGQV+RAREVYKMI +YNIKG+ EVYTIAIN C
Sbjct: 678 IAEMEAEIQPIVPDHVTFGTLMKACAKAGQVERAREVYKMIQQYNIKGSSEVYTIAINSC 737
Query: 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
SQTGDWEFA SVYDDMT+KGV+PDE+F+SALID AGHA K+EAAF+ILQ+A+ +G+ +GI
Sbjct: 738 SQTGDWEFARSVYDDMTQKGVLPDEMFMSALIDVAGHAKKLEAAFDILQQARKEGVQIGI 797
Query: 297 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 356
++YSSLMGACS AKNWQ+ALELYE++KS+KL TVST+NAL+TALCDGDQ K +EVLS+
Sbjct: 798 MTYSSLMGACSKAKNWQRALELYEYLKSLKLVQTVSTVNALLTALCDGDQFQKALEVLSE 857
Query: 357 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 416
MK LGLCPN+IT+SIL+VA E+KDD+E MLLSQAK+DG P L+M +CIIGMC RR+E
Sbjct: 858 MKGLGLCPNSITFSILIVASEKKDDMEAAQMLLSQAKKDGAAPTLIMCRCIIGMCLRRFE 917
Query: 417 KARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNAD 476
KA + E VLSF+SGRPQ+ N+WTSLALMVYRE I AG PT +++S+VLGCL+ PY+
Sbjct: 918 KACLVGETVLSFDSGRPQVNNEWTSLALMVYRETIGAGEKPTSQILSQVLGCLKFPYDTY 977
Query: 477 IRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVV 536
+R RLVENLGV+A++ K SNLCSLIDGFGEYDPRAFS+LEEAAS+G+VP VS K P+V+
Sbjct: 978 VRNRLVENLGVTAESSKTSNLCSLIDGFGEYDPRAFSILEEAASYGVVPSVSLKMNPIVI 1037
Query: 537 DARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERT 596
DA++L+ TA+VYLLTILKGL+HRLAAGAKLPN+ ILLPVE+T+++S GEKTI +AER
Sbjct: 1038 DAKELDAFTAEVYLLTILKGLKHRLAAGAKLPNIIILLPVEETKLLSPEGEKTIILAERG 1097
Query: 597 TQAIAALLRRLGLPYQGNGSYGKIRINGLALKRWFQPKLASPFSGKPGELSS--LQLGKF 654
QA+AAL RRL +PYQG+ S GK+RIN L L +W+QPKLASPF G G+ SS L+LGK
Sbjct: 1098 GQAVAALFRRLHIPYQGSESNGKLRINSLGLIKWYQPKLASPFGGFQGDWSSTQLRLGKN 1157
Query: 655 ITHQQRNIRTGNLSLE 670
I++QQRNIRTGNLSL+
Sbjct: 1158 ISNQQRNIRTGNLSLD 1173
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356529805|ref|XP_003533478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 936 bits (2418), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/685 (65%), Positives = 547/685 (79%), Gaps = 54/685 (7%)
Query: 40 RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLM 99
R+ EC++LL+DME KGLLDM KVYHA+FFN+CK +KA+KEAF F +L+PNP LSTFNMLM
Sbjct: 408 RLHECVELLKDMETKGLLDMTKVYHAKFFNICKKRKAVKEAFDFIRLIPNPMLSTFNMLM 467
Query: 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE----------- 148
SVCASS+DSEGAFQVL+L+++A L+ DCKLYTTLI TCAKSGKVD MFE
Sbjct: 468 SVCASSQDSEGAFQVLQLLKDARLEPDCKLYTTLILTCAKSGKVDLMFEVFHKMVNSGVE 527
Query: 149 --------------------------------NVKPDRVVFNALITACGQSGAVDRAFDV 176
NVKPDRVVFNALI AC QSGA+DRAFDV
Sbjct: 528 PNVHTYGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIAACAQSGALDRAFDV 587
Query: 177 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 236
LAEM AE P+DPDH+TIGAL+KAC AGQV+RA+EVYKM+ KYNIKG PEVYTIAIN C
Sbjct: 588 LAEMTAETQPIDPDHVTIGALLKACTKAGQVERAKEVYKMVQKYNIKGCPEVYTIAINSC 647
Query: 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
SQTGDWEFA +VY+DMT+KG++PDE+FLSALID AGHA K++AAF++LQEA+ GI +GI
Sbjct: 648 SQTGDWEFAHTVYNDMTQKGILPDEIFLSALIDVAGHAKKLDAAFDVLQEARKGGILIGI 707
Query: 297 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 356
+SYSSLMGACSNA+NWQKALELYE++KS+KL TVST+NAL+TALCDGDQ K +EVL +
Sbjct: 708 MSYSSLMGACSNARNWQKALELYEYLKSLKLTITVSTVNALLTALCDGDQFQKALEVLFE 767
Query: 357 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 416
MK LGL PN+IT+SIL+VA E+KDD+E MLLS AK+DGV+PNL+M +CIIGMC RR+E
Sbjct: 768 MKGLGLRPNSITFSILIVASEKKDDMEAAQMLLSLAKKDGVVPNLIMCRCIIGMCQRRFE 827
Query: 417 KARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNAD 476
KA + E VLSF+SGRPQ++NKWTSLALMVYRE I AG PT E++S++LGCLQLPY+
Sbjct: 828 KACFVGEPVLSFDSGRPQVDNKWTSLALMVYRETIEAGEKPTSEILSQILGCLQLPYDTS 887
Query: 477 IRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVV 536
++ RLVENLGVS + + SNLCSL+DGFGEYDPRAFS+LEE+AS G+VP VS K PVV+
Sbjct: 888 VKNRLVENLGVSMETSRSSNLCSLMDGFGEYDPRAFSILEESASHGVVPSVSLKVSPVVI 947
Query: 537 DARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERT 596
DA++L TA+VYL+T+LKGL+HRLAAGA+LPN+ ILLPVEKT+++S +K I++ R
Sbjct: 948 DAKELNASTAEVYLITVLKGLKHRLAAGARLPNIIILLPVEKTEVVSPKWKKNINLGGRA 1007
Query: 597 TQAIAALLRRLGLPYQGNGSYGKIRINGLALKRWFQPKLASP---------FSGKPGELS 647
QA+ ALLRRL +P+QG+ S GK+RI GLALK+WFQPKLA P FSGKPG+ +
Sbjct: 1008 GQAVGALLRRLQIPHQGSESNGKLRIGGLALKKWFQPKLAYPFSVNMGSPTFSGKPGDWN 1067
Query: 648 S--LQLGKFITHQQRNIRTGNLSLE 670
S +LGK I++QQRNIRTGNLSL+
Sbjct: 1068 SSLSRLGKSISNQQRNIRTGNLSLD 1092
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356544435|ref|XP_003540656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 928 bits (2398), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/685 (64%), Positives = 545/685 (79%), Gaps = 54/685 (7%)
Query: 40 RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLM 99
R+ EC++LL+DME KGLLDM KVYHA+FFN+CK +KA+KEAF F +L+PNP LSTFNMLM
Sbjct: 387 RLHECVELLKDMETKGLLDMSKVYHAKFFNICKKRKAVKEAFDFIRLIPNPMLSTFNMLM 446
Query: 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE----------- 148
SVCASS+DSEGAFQVL+L+++A L+ DCKLYTTLI TCAKSGKVD MFE
Sbjct: 447 SVCASSQDSEGAFQVLQLLKDARLEPDCKLYTTLILTCAKSGKVDLMFEVFHKMVNSGVE 506
Query: 149 --------------------------------NVKPDRVVFNALITACGQSGAVDRAFDV 176
NVKPDRVVFNALI AC QSGAVDRAFDV
Sbjct: 507 PNVHTYGALIGGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIAACAQSGAVDRAFDV 566
Query: 177 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 236
LAEM AE P+DPDH+TIGAL+KAC AGQV+RA+EVYKM+ KYNIKG PEVYTIAIN C
Sbjct: 567 LAEMAAETQPIDPDHVTIGALLKACTKAGQVERAQEVYKMVQKYNIKGCPEVYTIAINSC 626
Query: 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
SQTGDWE+A +VY+DMT+KG++PDE+FLSALID AGHA K++AAF++LQEA GI +GI
Sbjct: 627 SQTGDWEYARTVYNDMTQKGILPDEIFLSALIDVAGHAKKLDAAFDVLQEAHKGGIQIGI 686
Query: 297 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 356
+SYSSLMGACSNA+NWQKALELYE++KS+KL TVST+NAL+TALCDGDQ K +EVL +
Sbjct: 687 MSYSSLMGACSNARNWQKALELYEYLKSLKLTITVSTVNALLTALCDGDQFQKALEVLFE 746
Query: 357 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 416
MK LGL PN+IT+SIL+VA E+KDD+E M+LS AK+DGV PNL+M +CIIGMC RRYE
Sbjct: 747 MKGLGLSPNSITFSILIVASEKKDDMEAAQMILSLAKKDGVAPNLIMCRCIIGMCQRRYE 806
Query: 417 KARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNAD 476
KA + E VLSF+SGRP ++NKWTSLALMVYRE I AG PT E++ ++LGCLQLPY+
Sbjct: 807 KACFVGEPVLSFDSGRPLVDNKWTSLALMVYRETIEAGGKPTSEILPQILGCLQLPYDTS 866
Query: 477 IRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVV 536
++ RLVENLGV A+ + SNLCSL+DGFGEYDPRAFS+LEE+AS G+VP VSFK P+V+
Sbjct: 867 VKNRLVENLGVRAETSRSSNLCSLMDGFGEYDPRAFSILEESASHGVVPSVSFKVSPIVI 926
Query: 537 DARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERT 596
DA++L TA+VY++T+LKGL++RLAAGA+LPN+ ILLPVE+T+++S G+K I++ R
Sbjct: 927 DAKELHASTAEVYIITVLKGLKYRLAAGARLPNIIILLPVEETEVVSPKGKKIINLGGRA 986
Query: 597 TQAIAALLRRLGLPYQGNGSYGKIRINGLALKRWFQPKLASP---------FSGKPGELS 647
QA+ ALLRRL +P+QG+ S GK+RI GLALK+WFQPKLASP FSGKPG+ +
Sbjct: 987 GQAVGALLRRLQIPHQGSESNGKLRIGGLALKKWFQPKLASPFSVNMGSPTFSGKPGDWN 1046
Query: 648 S--LQLGKFITHQQRNIRTGNLSLE 670
S +LGK I++QQRNIR GNLSL+
Sbjct: 1047 SSLSRLGKNISNQQRNIRIGNLSLD 1071
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|110741791|dbj|BAE98839.1| hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 924 bits (2387), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/711 (62%), Positives = 545/711 (76%), Gaps = 48/711 (6%)
Query: 6 KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
++M QFP N + N E +YNRL+R GRI +CI LLED++++ LLDMDK+YHA
Sbjct: 381 ESMPQFPARNFELHNSNGRSPETSDAYNRLLRDGRIKDCISLLEDLDQRDLLDMDKIYHA 440
Query: 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
FF CK Q+A+KEAFRF KL+ NPT+STFNMLMSVCASS+D EGA VLRLVQE+G+ A
Sbjct: 441 SFFKACKKQRAVKEAFRFTKLILNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTA 500
Query: 126 DCKLYTTLITTCAKSGKVDAMFE------------------------------------- 148
DCKLYTTLI++CAKSGKVDAMFE
Sbjct: 501 DCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAY 560
Query: 149 ------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
NVKPDRVVFNALI+ACGQSGAVDRAFDVLAEM AE HP+DPDHI+IGALMKAC
Sbjct: 561 GILRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACC 620
Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
NAGQV+RA+EVY+MIHKY I+GTPEVYTIA+N CS++GDW+FACS+Y DM +K V PDEV
Sbjct: 621 NAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEV 680
Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
F SALID AGHA ++ AF ILQ+AK+QGI +G ISYSSLMGAC NAK+W+KALELYE +
Sbjct: 681 FFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKI 740
Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
KSIKL+PT+STMNALITALC+G+QLPK ME L ++K+LGL PNTITYS+L++A ERKDD
Sbjct: 741 KSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNTITYSMLMLASERKDDF 800
Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 442
EV LLSQAK DGV PNL+M +CI +C RR+EKA E V+SF SGRPQIENKWTS+
Sbjct: 801 EVSFKLLSQAKGDGVSPNLIMCRCITSLCKRRFEKACAGGEPVVSFKSGRPQIENKWTSM 860
Query: 443 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 502
ALMVYRE I GT+PT EVVS+VLGCLQLP++A +R+RL+ LG++ + K+ N+ L+D
Sbjct: 861 ALMVYRETISGGTVPTTEVVSQVLGCLQLPHDAALRDRLISTLGINISSQKQHNIFPLVD 920
Query: 503 GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRLA 562
GFGEYDPRAFSLLEEA S G++P VSF +IP+ D +L + A+VYLLTI KGL+HRLA
Sbjct: 921 GFGEYDPRAFSLLEEATSLGVLPSVSFNKIPLFFDTTELPKNVAEVYLLTIFKGLKHRLA 980
Query: 563 AGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQGNGSYGKIRI 622
AGAK+P++N+++ +++ +I + GEKTID+ R Q I ALLRRL +PY S ++RI
Sbjct: 981 AGAKIPHINLIISIQEKEIRTPEGEKTIDLTGRVGQEIGALLRRLDIPYHRKDS--RLRI 1038
Query: 623 NGLALKRWFQPKLASPFS-GKPGELSSLQ--LGKFITHQQRNIRTGNLSLE 670
NG++LK WFQPKL SPFS GKPG+L S Q LG I+ QQR+IR GNLSLE
Sbjct: 1039 NGVSLKNWFQPKLDSPFSGGKPGDLRSSQVPLGNQISRQQRSIRLGNLSLE 1089
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|110740372|dbj|BAF02081.1| hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 924 bits (2387), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/711 (62%), Positives = 545/711 (76%), Gaps = 48/711 (6%)
Query: 6 KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
++M QFP N + N E +YNRL+R GRI +CI LLED++++ LLDMDK+YHA
Sbjct: 381 ESMPQFPARNFELHNSNGRSPETSDAYNRLLRDGRIKDCISLLEDLDQRDLLDMDKIYHA 440
Query: 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
FF CK Q+A+KEAFRF KL+ NPT+STFNMLMSVCASS+D EGA VLRLVQE+G+ A
Sbjct: 441 SFFKACKKQRAVKEAFRFTKLILNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTA 500
Query: 126 DCKLYTTLITTCAKSGKVDAMFE------------------------------------- 148
DCKLYTTLI++CAKSGKVDAMFE
Sbjct: 501 DCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAY 560
Query: 149 ------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
NVKPDRVVFNALI+ACGQSGAVDRAFDVLAEM AE HP+DPDHI+IGALMKAC
Sbjct: 561 GILRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACC 620
Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
NAGQV+RA+EVY+MIHKY I+GTPEVYTIA+N CS++GDW+FACS+Y DM +K V PDEV
Sbjct: 621 NAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEV 680
Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
F SALID AGHA ++ AF ILQ+AK+QGI +G ISYSSLMGAC NAK+W+KALELYE +
Sbjct: 681 FFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKI 740
Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
KSIKL+PT+STMNALITALC+G+QLPK ME L ++K+LGL PNTITYS+L++A ERKDD
Sbjct: 741 KSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNTITYSMLMLASERKDDF 800
Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 442
EV LLSQAK DGV PNL+M +CI +C RR+EKA E V+SF SGRPQIENKWTS+
Sbjct: 801 EVSFKLLSQAKGDGVSPNLIMCRCITSLCKRRFEKACAGGEPVVSFKSGRPQIENKWTSM 860
Query: 443 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 502
ALMVYRE I GT+PT EVVS+VLGCLQLP++A +R+RL+ LG++ + K+ N+ L+D
Sbjct: 861 ALMVYRETISGGTVPTTEVVSQVLGCLQLPHDAALRDRLISTLGINISSQKQHNIFPLVD 920
Query: 503 GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRLA 562
GFGEYDPRAFSLLEEA S G++P VSF +IP+ D +L + A+VYLLTI KGL+HRLA
Sbjct: 921 GFGEYDPRAFSLLEEATSLGVLPSVSFNKIPLFFDTTELPKNVAEVYLLTIFKGLKHRLA 980
Query: 563 AGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQGNGSYGKIRI 622
AGAK+P++N+++ +++ +I + GEKTID+ R Q I ALLRRL +PY S ++RI
Sbjct: 981 AGAKIPHINLIISIQEKEIRTPEGEKTIDLTGRVGQEIGALLRRLDIPYHRKDS--RLRI 1038
Query: 623 NGLALKRWFQPKLASPFS-GKPGELSSLQ--LGKFITHQQRNIRTGNLSLE 670
NG++LK WFQPKL SPFS GKPG+L S Q LG I+ QQR+IR GNLSLE
Sbjct: 1039 NGVSLKNWFQPKLDSPFSGGKPGDLRSSQVPLGNQISRQQRSIRLGNLSLE 1089
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 670 | ||||||
| TAIR|locus:2116915 | 1089 | MRL1 "MATURATION OF RBCL 1" [A | 0.895 | 0.550 | 0.609 | 8.7e-198 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.564 | 0.506 | 0.287 | 5.7e-30 | |
| TAIR|locus:2174008 | 974 | AT5G61990 "AT5G61990" [Arabido | 0.598 | 0.411 | 0.240 | 6.2e-28 | |
| TAIR|locus:2015228 | 614 | AT1G63080 [Arabidopsis thalian | 0.553 | 0.604 | 0.269 | 4e-27 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.577 | 0.614 | 0.256 | 1.2e-26 | |
| TAIR|locus:2163041 | 527 | AT5G41170 [Arabidopsis thalian | 0.614 | 0.781 | 0.260 | 2.1e-26 | |
| TAIR|locus:2061310 | 918 | GUN1 "AT2G31400" [Arabidopsis | 0.479 | 0.349 | 0.259 | 2.5e-26 | |
| TAIR|locus:2077061 | 619 | AT3G22470 "AT3G22470" [Arabido | 0.553 | 0.599 | 0.248 | 3.3e-26 | |
| TAIR|locus:2139732 | 566 | AT4G11690 [Arabidopsis thalian | 0.388 | 0.459 | 0.261 | 6.5e-26 | |
| TAIR|locus:2024296 | 598 | AT1G09900 "AT1G09900" [Arabido | 0.595 | 0.667 | 0.252 | 2.3e-25 |
| TAIR|locus:2116915 MRL1 "MATURATION OF RBCL 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1915 (679.2 bits), Expect = 8.7e-198, P = 8.7e-198
Identities = 376/617 (60%), Positives = 474/617 (76%)
Query: 69 NVCKSQKAIKEAFRFFKLVPNPTLST----FNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
+VC S + I+ A +LV ++ + L+S CA S + F+V + +G++
Sbjct: 475 SVCASSQDIEGARGVLRLVQESGMTADCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVE 534
Query: 125 ADCKLYTTLITTCAKSGKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDV 176
A+ + LI CA++G+V F +NVKPDRVVFNALI+ACGQSGAVDRAFDV
Sbjct: 535 ANLHTFGALIDGCARAGQVAKAFGAYGILRSKNVKPDRVVFNALISACGQSGAVDRAFDV 594
Query: 177 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 236
LAEM AE HP+DPDHI+IGALMKAC NAGQV+RA+EVY+MIHKY I+GTPEVYTIA+N C
Sbjct: 595 LAEMKAETHPIDPDHISIGALMKACCNAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSC 654
Query: 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
S++GDW+FACS+Y DM +K V PDEVF SALID AGHA ++ AF ILQ+AK+QGI +G
Sbjct: 655 SKSGDWDFACSIYKDMKEKDVTPDEVFFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGT 714
Query: 297 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 356
ISYSSLMGAC NAK+W+KALELYE +KSIKL+PT+STMNALITALC+G+QLPK ME L +
Sbjct: 715 ISYSSLMGACCNAKDWKKALELYEKIKSIKLRPTISTMNALITALCEGNQLPKAMEYLDE 774
Query: 357 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 416
+K+LGL PNTITYS+L++A ERKDD EV LLSQAK DGV PNL+M +CI +C RR+E
Sbjct: 775 IKTLGLKPNTITYSMLMLASERKDDFEVSFKLLSQAKGDGVSPNLIMCRCITSLCKRRFE 834
Query: 417 KARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNAD 476
KA E V+SF SGRPQIENKWTS+ALMVYRE I GT+PT EVVS+VLGCLQLP++A
Sbjct: 835 KACAGGEPVVSFKSGRPQIENKWTSMALMVYRETISGGTVPTTEVVSQVLGCLQLPHDAA 894
Query: 477 IRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVV 536
+R+RL+ LG++ + K+ N+ L+DGFGEYDPRAFSLLEEA S G++P VSF +IP+
Sbjct: 895 LRDRLISTLGINISSQKQHNIFPLVDGFGEYDPRAFSLLEEATSLGVLPSVSFNKIPLFF 954
Query: 537 DARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERT 596
D +L + A+VYLLTI KGL+HRLAAGAK+P++N+++ +++ +I + GEKTID+ R
Sbjct: 955 DTTELPKNVAEVYLLTIFKGLKHRLAAGAKIPHINLIISIQEKEIRTPEGEKTIDLTGRV 1014
Query: 597 TQAIAALLRRLGLPYQGNGSYGKIRINGLALKRWFQPKLASPFSG-KPGELSSLQ--LGK 653
Q I ALLRRL +PY S ++RING++LK WFQPKL SPFSG KPG+L S Q LG
Sbjct: 1015 GQEIGALLRRLDIPYHRKDS--RLRINGVSLKNWFQPKLDSPFSGGKPGDLRSSQVPLGN 1072
Query: 654 FITHQQRNIRTGNLSLE 670
I+ QQR+IR GNLSLE
Sbjct: 1073 QISRQQRSIRLGNLSLE 1089
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 361 (132.1 bits), Expect = 5.7e-30, P = 5.7e-30
Identities = 118/411 (28%), Positives = 198/411 (48%)
Query: 25 VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
VS + +YN LIR G I + L + ME KG L Y+ CK +K I +
Sbjct: 201 VSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRK-IDDG 259
Query: 81 FRFFKLVP----NPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
F+ + + P L ++N++++ +C + E +F VL + G D Y TLI
Sbjct: 260 FKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSF-VLTEMNRRGYSLDEVTYNTLIK 318
Query: 136 TCAKSGK--------VDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
K G + + + P + + +LI + ++G ++RA + L +M V +
Sbjct: 319 GYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMR--VRGL 376
Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEF 244
P+ T L+ + G ++ E Y+++ + N G +P V Y IN TG E
Sbjct: 377 CPNERTYTTLVDGFSQKGYMN---EAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMED 433
Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM- 303
A +V +DM +KG+ PD V S ++ + V+ A + +E +GI I+YSSL+
Sbjct: 434 AIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQ 493
Query: 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC-DGDQLPKTMEVLSDMKSLGL 362
G C + ++A +LYE M + L P T ALI A C +GD L K +++ ++M G+
Sbjct: 494 GFCEQRRT-KEACDLYEEMLRVGLPPDEFTYTALINAYCMEGD-LEKALQLHNEMVEKGV 551
Query: 363 CPNTITYSILLVACERKDDV-EVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
P+ +TYS+L+ ++ E +LL E+ V P+ V + +I CS
Sbjct: 552 LPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESV-PSDVTYHTLIENCS 601
|
|
| TAIR|locus:2174008 AT5G61990 "AT5G61990" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 345 (126.5 bits), Expect = 6.2e-28, P = 6.2e-28
Identities = 101/420 (24%), Positives = 193/420 (45%)
Query: 18 HANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS 73
H +H ++ + + Y+ I ++G + + L + M GL+ + Y + C+
Sbjct: 336 HEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCR- 394
Query: 74 QKAIKEAFRFFKLVP--NPTLS--TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKL 129
+K +++ + + N +S T+ ++ SS D +GA+ +++ + +G + + +
Sbjct: 395 EKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVI 454
Query: 130 YTTLITTCAKSGKV-DAMF-------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 181
YTTLI T ++ + DAM + + PD +N+LI ++ +D A L EM
Sbjct: 455 YTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEM- 513
Query: 182 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 241
E + + P+ T GA + A + A + K + + + + T IN + G
Sbjct: 514 VE-NGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGK 572
Query: 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 301
ACS Y M +G++ D + L++ KV+ A EI +E + +GI+ + SY
Sbjct: 573 VIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGV 632
Query: 302 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 361
L+ S N QKA +++ M L P V N L+ C ++ K E+L +M G
Sbjct: 633 LINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKG 692
Query: 362 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTL 421
L PN +TY ++ + D+ L + K G++P+ ++ ++ C R + R +
Sbjct: 693 LHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAI 752
|
|
| TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 333 (122.3 bits), Expect = 4.0e-27, P = 4.0e-27
Identities = 106/394 (26%), Positives = 187/394 (47%)
Query: 49 EDMERKGLLDMDKVYHARFFNVCK-SQKAIKEAF--RFFKLVPNPTLSTFNMLMS-VCAS 104
E ME G+ Y+ +C+ SQ + A + KL P++ T N L++ C
Sbjct: 89 EKMEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHG 148
Query: 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFENV-----KPDRVV 156
++ SE V ++V E G + D +TTL+ + K A+ E + +PD V
Sbjct: 149 NRISEAVALVDQMV-EMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVT 207
Query: 157 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 216
+ A+I + G D A ++L +M E ++ D + ++ + VD A ++
Sbjct: 208 YGAVINGLCKRGEPDLALNLLNKM--EKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTE 265
Query: 217 IHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
+ I+ P+V+T + I+C G W A + DM ++ + P+ V ++LID
Sbjct: 266 MDNKGIR--PDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKE 323
Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVST 333
GK+ A ++ E + I I++Y+SL+ G C + + +A +++ M S P V T
Sbjct: 324 GKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDR-LDEAQQIFTLMVSKDCLPDVVT 382
Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393
N LI C ++ ME+ DM GL NT+TY+ L+ + D + M+ Q
Sbjct: 383 YNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMV 442
Query: 394 EDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 425
DGV PN++ + ++ G+C + EKA + E++
Sbjct: 443 SDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 476
|
|
| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 329 (120.9 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 104/406 (25%), Positives = 183/406 (45%)
Query: 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK-SQKAIKEAF--RFFKLVPNPT 91
+ + + I L E M+ G+ Y C+ SQ + A + KL P
Sbjct: 91 IAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPN 150
Query: 92 LSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------V 143
+ T + L++ C S + SE V ++ G + + + TLI K +
Sbjct: 151 IVTLSSLLNGYCHSKRISEAVALVDQMFV-TGYQPNTVTFNTLIHGLFLHNKASEAMALI 209
Query: 144 DAMF-ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
D M + +PD V + ++ + G D AF++L +M E ++P + ++
Sbjct: 210 DRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKM--EQGKLEPGVLIYNTIIDGLC 267
Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
+D A ++K + I+ Y+ I+C G W A + DM ++ + PD
Sbjct: 268 KYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVF 327
Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEH 321
SALID GK+ A ++ E + I I++YSSL+ G C + + +A +++E
Sbjct: 328 TFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDR-LDEAKQMFEF 386
Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
M S P V T N LI C ++ + MEV +M GL NT+TY+IL+ + D
Sbjct: 387 MVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGD 446
Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 425
++ + + DGV PN++ + ++ G+C + EKA + E++
Sbjct: 447 CDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 492
|
|
| TAIR|locus:2163041 AT5G41170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 324 (119.1 bits), Expect = 2.1e-26, P = 2.1e-26
Identities = 114/438 (26%), Positives = 201/438 (45%)
Query: 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC---KSQKAIKEAF--RFFKLV 87
N + + + I+L + ++ G+ D +Y C SQ + +F + KL
Sbjct: 80 NVIAKMKKFDVVINLCDHLQIMGV-SHD-LYTCNLLMNCFCQSSQPYLASSFLGKMMKLG 137
Query: 88 PNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD-- 144
P + TF L++ C ++ E V ++V E G+K D +YTT+I + K+G V+
Sbjct: 138 FEPDIVTFTSLINGFCLGNRMEEAMSMVNQMV-EMGIKPDVVMYTTIIDSLCKNGHVNYA 196
Query: 145 -AMF---EN--VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
++F EN ++PD V++ +L+ SG A +L M + PD IT AL+
Sbjct: 197 LSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKR--KIKPDVITFNALI 254
Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
A G+ A E+Y + + +I YT IN G + A ++ M KG
Sbjct: 255 DAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCF 314
Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
PD V ++LI+ KV+ A +I E +G++ I+Y++L+ A E+
Sbjct: 315 PDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEV 374
Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL---GLCPNTITYSILLVA 375
+ HM S + P + T N L+ LC ++ K + + DM+ G+ PN TY++LL
Sbjct: 375 FSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHG 434
Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSG-RP 433
+E LM+ ++ + ++ + II GMC K +N + G +P
Sbjct: 435 LCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVK-NAVNLFCSLPSKGVKP 493
Query: 434 QIENKWTSLALMVYREAI 451
+ +T++ ++RE +
Sbjct: 494 NVVT-YTTMISGLFREGL 510
|
|
| TAIR|locus:2061310 GUN1 "AT2G31400" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 330 (121.2 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 86/332 (25%), Positives = 155/332 (46%)
Query: 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------- 142
T+ F+ L+S S E A V ++E GL+ + Y +I C K G
Sbjct: 267 TVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKF 326
Query: 143 VDAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
D M N V+PDR+ FN+L+ C + G + A ++ EM ++ D + L+ A
Sbjct: 327 FDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNR--RIEQDVFSYNTLLDAI 384
Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
GQ+D A E+ + I Y+ I+ ++ G ++ A +++ +M G+ D
Sbjct: 385 CKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDR 444
Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
V + L+ G+ E A +IL+E + GI +++Y++L+G + + +++
Sbjct: 445 VSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTE 504
Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
MK + P + T + LI G + ME+ + KS GL + + YS L+ A +
Sbjct: 505 MKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGL 564
Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
V + L+ + ++G+ PN+V + II R
Sbjct: 565 VGSAVSLIDEMTKEGISPNVVTYNSIIDAFGR 596
|
|
| TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 325 (119.5 bits), Expect = 3.3e-26, P = 3.3e-26
Identities = 97/390 (24%), Positives = 182/390 (46%)
Query: 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFKLVPNPT 91
N L +GR+SE + L++ M G D+V + N +CKS + A F+ +
Sbjct: 183 NGLCLKGRVSEALVLIDRMVEYGF-QPDEVTYGPVLNRLCKSGNSAL-ALDLFRKMEERN 240
Query: 92 LSTFNMLMSVCASSKDSEGAFQ-VLRLVQEA---GLKADCKLYTTLITTCAKSGKVD--- 144
+ + S+ S +G+F L L E G+KAD Y++LI GK D
Sbjct: 241 IKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGA 300
Query: 145 AMFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
M N+ PD V F+ALI + G + A ++ EM + PD IT +L+
Sbjct: 301 KMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITR--GIAPDTITYNSLID 358
Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
+ A +++ ++ + Y+I IN + + ++ +++ KG+IP
Sbjct: 359 GFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIP 418
Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALEL 318
+ + + L+ +GK+ AA E+ QE ++G+ +++Y L+ G C N + KALE+
Sbjct: 419 NTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGE-LNKALEI 477
Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
+E M+ ++ + N +I +C+ ++ + + G+ P+ +TY++++ +
Sbjct: 478 FEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCK 537
Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
K + ML + KEDG P+ + +I
Sbjct: 538 KGSLSEADMLFRKMKEDGCTPDDFTYNILI 567
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| TAIR|locus:2139732 AT4G11690 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 321 (118.1 bits), Expect = 6.5e-26, P = 6.5e-26
Identities = 69/264 (26%), Positives = 136/264 (51%)
Query: 157 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 216
F LI C ++G ++++FD+L E+ P+ + L+ C G++++A++++
Sbjct: 166 FGILIKGCCEAGEIEKSFDLLIELTE--FGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFE 223
Query: 217 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 276
+ K + YT+ IN + G + +Y+ M + GV P+ + +++ G+
Sbjct: 224 MGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGR 283
Query: 277 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 336
+ AF++ E + +G+S I++Y++L+G +A ++ + MKS + P + T N
Sbjct: 284 TKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNT 343
Query: 337 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396
LI C +L K + + D+KS GL P+ +TY+IL+ RK D ++ + +E G
Sbjct: 344 LIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERG 403
Query: 397 VIPNLVMFKCIIGMCSR--RYEKA 418
+ P+ V + +I +R EKA
Sbjct: 404 IKPSKVTYTILIDTFARSDNMEKA 427
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| TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 317 (116.6 bits), Expect = 2.3e-25, P = 2.3e-25
Identities = 106/419 (25%), Positives = 194/419 (46%)
Query: 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPNPTLSTF 95
R G+ + +LE +E G + Y+ CK+ + I A ++ +P + T+
Sbjct: 149 RLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGE-INNALSVLDRMSVSPDVVTY 207
Query: 96 N-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI-TTCAKSGKVDAM--FENVK 151
N +L S+C S K + A +VL + + D YT LI TC SG AM + ++
Sbjct: 208 NTILRSLCDSGKLKQ-AMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMR 266
Query: 152 -----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
PD V +N L+ + G +D A L +M + P+ IT ++++ + G+
Sbjct: 267 DRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSS--GCQPNVITHNIILRSMCSTGR 324
Query: 207 -VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
+D + + M+ K + + I IN + G A + + M + G P+ + +
Sbjct: 325 WMDAEKLLADMLRK-GFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYN 383
Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA-CSNAKNWQKALELYEHMKS 324
L+ K++ A E L+ ++G I++Y++++ A C + K + A+E+ + S
Sbjct: 384 PLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKV-EDAVEILNQLSS 442
Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
P + T N +I L + K +++L +M++ L P+TITYS L+ R+ V+
Sbjct: 443 KGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDE 502
Query: 385 GLMLLSQAKEDGVIPNLVMFKCI-IGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 442
+ + + G+ PN V F I +G+C R + R ++ V N G E +T L
Sbjct: 503 AIKFFHEFERMGIRPNAVTFNSIMLGLCKSR-QTDRAIDFLVFMINRGCKPNETSYTIL 560
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q0WLC6 | PP349_ARATH | No assigned EC number | 0.6286 | 0.9895 | 0.6088 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00036018001 | SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (757 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 670 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.0 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-15 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-10 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-10 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 7e-09 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-05 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 8e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-04 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 7e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-04 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.001 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 1123 bits (2905), Expect = 0.0
Identities = 470/692 (67%), Positives = 554/692 (80%), Gaps = 45/692 (6%)
Query: 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
E + +YNRL+R GRI +CIDLLEDME++GLLDMDK+YHA+FF CK Q+A+KEAFRF
Sbjct: 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRF 428
Query: 84 FKLVPNPTLSTFNMLMSV-----------------------------------CASSKDS 108
KL+ NPTLSTFNMLMSV CA S
Sbjct: 429 AKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKV 488
Query: 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF--------ENVKPDRVVFNAL 160
+ F+V + AG++A+ + LI CA++G+V F +NVKPDRVVFNAL
Sbjct: 489 DAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 548
Query: 161 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 220
I+ACGQSGAVDRAFDVLAEM AE HP+DPDHIT+GALMKACANAGQVDRA+EVY+MIH+Y
Sbjct: 549 ISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608
Query: 221 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 280
NIKGTPEVYTIA+N CSQ GDW+FA S+YDDM KKGV PDEVF SAL+D AGHAG ++ A
Sbjct: 609 NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA 668
Query: 281 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 340
FEILQ+A+ QGI +G +SYSSLMGACSNAKNW+KALELYE +KSIKL+PTVSTMNALITA
Sbjct: 669 FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITA 728
Query: 341 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
LC+G+QLPK +EVLS+MK LGLCPNTITYSILLVA ERKDD +VGL LLSQAKEDG+ PN
Sbjct: 729 LCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPN 788
Query: 401 LVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVE 460
LVM +CI G+C RR+EKA L E V+SF+SGRPQIENKWTS ALMVYRE I AGT+PT+E
Sbjct: 789 LVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTME 848
Query: 461 VVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAAS 520
V+S+VLGCLQLP++A +R RL+ENLG+SAD+ K+SNL +L+DGFGEYDPRAFSLLEEAAS
Sbjct: 849 VLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEYDPRAFSLLEEAAS 908
Query: 521 FGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQ 580
G+VP VSFK+ P+V+DA +L + A+VYLLTILKGL+HRLAAGAKLPNV ILLP EK +
Sbjct: 909 LGVVPSVSFKKSPIVIDAEELPVFAAEVYLLTILKGLKHRLAAGAKLPNVTILLPTEKKE 968
Query: 581 IMSVGGEKTIDIAERTTQAIAALLRRLGLPYQGNGSYGKIRINGLALKRWFQPKLASPFS 640
I + GEKTI++A R QA+AALLRRLGLPYQG+ S+GK+RINGL+L+RWFQPKL SPFS
Sbjct: 969 IYTPKGEKTINLAGRVGQAVAALLRRLGLPYQGSESHGKLRINGLSLRRWFQPKLKSPFS 1028
Query: 641 GKPGELSSLQ--LGKFITHQQRNIRTGNLSLE 670
GKP +LSS Q LGK I QQR IR GNLSLE
Sbjct: 1029 GKPEDLSSSQSRLGKGIADQQRAIRLGNLSLE 1060
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Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 80.3 bits (198), Expect = 1e-15
Identities = 82/376 (21%), Positives = 143/376 (38%), Gaps = 58/376 (15%)
Query: 81 FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI---TTC 137
F +L +P L T ++S C D ++ V + G D + +LI +
Sbjct: 277 FTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL 336
Query: 138 AKSGKVDAMFENVK-PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
G+ + +F ++ D V + A+I+ ++G D+A + A M E V PD ITI +
Sbjct: 337 GSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALM--EQDNVSPDEITIAS 394
Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
++ ACA G +D +++++ + + V I S+ + A V+ ++ +K
Sbjct: 395 VLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKD 454
Query: 257 VI------------------------------PDEVFLSALIDFAGHAGKVEAAFEILQE 286
VI P+ V L A + G + EI
Sbjct: 455 VISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAH 514
Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL--------KPTVSTMNALI 338
GI G NA L+LY + + V + N L+
Sbjct: 515 VLRTGIG--------FDGFLPNA-----LLDLYVRCGRMNYAWNQFNSHEKDVVSWNILL 561
Query: 339 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED-GV 397
T + +E+ + M G+ P+ +T+ LL AC R V GL +E +
Sbjct: 562 TGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSI 621
Query: 398 IPNLVMFKCIIGMCSR 413
PNL + C++ + R
Sbjct: 622 TPNLKHYACVVDLLGR 637
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 2e-10
Identities = 100/445 (22%), Positives = 189/445 (42%), Gaps = 60/445 (13%)
Query: 23 HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFR 82
HD + QL + L G++ + + LLE M+ + + Y A F +C+ ++A++E R
Sbjct: 52 HDSNSQLRA---LCSHGQLEQALKLLESMQELRVPVDEDAYVA-LFRLCEWKRAVEEGSR 107
Query: 83 FFKLVPNPTLSTF-----NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
+ + N ++S+ + A+ V + E L + + L+
Sbjct: 108 VCSRA-LSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFS----WNVLVGGY 162
Query: 138 AKSGKVDA--------MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP--- 186
AK+G D ++ V+PD F ++ CG G D A EVH
Sbjct: 163 AKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCG--GIPDLA------RGREVHAHVV 214
Query: 187 ---VDPDHITIGALMKACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDW 242
+ D + AL+ G V AR V+ +M + I + I+ + G+
Sbjct: 215 RFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCIS-----WNAMISGYFENGEC 269
Query: 243 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
++ M + V PD + ++++I G E+ G +V + +SL
Sbjct: 270 LEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSL 329
Query: 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP-KTMEVLSDMKSLG 361
+ + +W +A +++ M++ K VS A+I+ + + LP K +E + M+
Sbjct: 330 IQMYLSLGSWGEAEKVFSRMET---KDAVS-WTAMISG-YEKNGLPDKALETYALMEQDN 384
Query: 362 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTL 421
+ P+ IT + +L AC D++VG+ L A+ G+I +V+ +I M Y K + +
Sbjct: 385 VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEM----YSKCKCI 440
Query: 422 NEHVLSFNSGRPQIENK----WTSL 442
++ + F+ I K WTS+
Sbjct: 441 DKALEVFH----NIPEKDVISWTSI 461
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.9 bits (136), Expect = 2e-10
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
P V T N LI C ++ + +++ ++MK G+ PN TYSIL+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.1 bits (134), Expect = 5e-10
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 296 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 343
+++Y++L+ ++AL+L+ MK +KP V T + LI LC
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 7e-10
Identities = 68/324 (20%), Positives = 129/324 (39%), Gaps = 42/324 (12%)
Query: 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---M 146
P + TF ++ C D +V V G + D + LIT K G V + +
Sbjct: 185 PDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLV 244
Query: 147 FENV-KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
F+ + + D + +NA+I+ ++G ++ M VDPD +TI +++ AC G
Sbjct: 245 FDRMPRRDCISWNAMISGYFENGECLEGLELFFTMREL--SVDPDLMTITSVISACELLG 302
Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW----------------------- 242
RE++ + K V I G W
Sbjct: 303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMIS 362
Query: 243 --------EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 294
+ A Y M + V PDE+ +++++ G ++ ++ + A+ +G+
Sbjct: 363 GYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLIS 422
Query: 295 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 354
++ ++L+ S K KALE++ ++ + V + ++I L ++ + +
Sbjct: 423 YVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFF 478
Query: 355 SDMKSLGLCPNTITYSILLVACER 378
M L L PN++T L AC R
Sbjct: 479 RQML-LTLKPNSVTLIAALSACAR 501
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Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 7e-09
Identities = 60/277 (21%), Positives = 115/277 (41%), Gaps = 28/277 (10%)
Query: 77 IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
+ +A R F +P L+++ ++ + + AF + R + E G A+ + + ++
Sbjct: 174 LIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRA 233
Query: 137 CAKSGKVDA--------MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
A G A + V D V ALI + G ++ A V M
Sbjct: 234 SAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM-------- 285
Query: 189 PDHITIG--ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
P+ T+ +++ A G + A +Y + + ++I I S+ E A
Sbjct: 286 PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAK 345
Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA---FEILQEAKNQGISVGIISYSSLM 303
+ + + G D V +AL+D G++E A F+ + KN +IS+++L+
Sbjct: 346 QAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR-KN------LISWNALI 398
Query: 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 340
N KA+E++E M + + P T A+++A
Sbjct: 399 AGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA 435
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Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 2e-07
Identities = 84/382 (21%), Positives = 153/382 (40%), Gaps = 46/382 (12%)
Query: 71 CKSQKAIKEAFRFFKLVPNPTL--STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128
C + E F + TL ST++ L+ C + K V V+ +G + D
Sbjct: 100 CGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQY 159
Query: 129 LYTTLITTCAKSGK-VDA--MFENVKPDR--VVFNALITACGQSGAVDRAFDVLAEMNAE 183
+ ++ K G +DA +F+ + P+R + +I +G AF + EM +
Sbjct: 160 MMNRVLLMHVKCGMLIDARRLFDEM-PERNLASWGTIIGGLVDAGNYREAFALFREMWED 218
Query: 184 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 243
D + T +++A A G ++++ + K + G V I+ S+ GD E
Sbjct: 219 GS--DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIE 276
Query: 244 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303
A V+D M +K + + S L +A H G E A + E ++ G+S+ ++S ++
Sbjct: 277 DARCVFDGMPEKTTV---AWNSMLAGYALH-GYSEEALCLYYEMRDSGVSIDQFTFSIMI 332
Query: 304 GACS------NAKNWQKAL----------------ELYEHMKSIKLKPTVSTM------- 334
S +AK L +LY ++ V
Sbjct: 333 RIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLI 392
Query: 335 --NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL-MLLSQ 391
NALI + + K +E+ M + G+ PN +T+ +L AC E G + S
Sbjct: 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSM 452
Query: 392 AKEDGVIPNLVMFKCIIGMCSR 413
++ + P + + C+I + R
Sbjct: 453 SENHRIKPRAMHYACMIELLGR 474
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 1e-06
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
PD V +N LI + G V+ A + EM + + P+ T L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEM--KKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 2e-05
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
Y I+ + G E A ++++M K+G+ P+ S LID
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 4e-05
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
Y I+ + G E A ++ +M ++G+ PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 8e-05
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
PD V + LID GKVE A ++ E K +GI + +YS L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 8e-05
Identities = 66/325 (20%), Positives = 130/325 (40%), Gaps = 59/325 (18%)
Query: 55 GLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQV 114
L+DM ++ C I++A F +P T +N +++ A SE A +
Sbjct: 264 ALIDM--------YSKCGD---IEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCL 312
Query: 115 LRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAF 174
++++G+ D ++ +I ++ ++ +G + F
Sbjct: 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLE----------------HAKQAHAGLIRTGF 356
Query: 175 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 234
+ D + AL+ + G+++ AR V+ + + N+ + I
Sbjct: 357 PL-------------DIVANTALVDLYSKWGRMEDARNVFDRMPRKNLIS----WNALIA 399
Query: 235 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE-AKNQGIS 293
G A +++ M +GV P+ V A++ ++G E +EI Q ++N I
Sbjct: 400 GYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIK 459
Query: 294 VGIISYSSLMGACSNAKNWQKAL--ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 351
+ Y AC ++ L E Y ++ KPTV+ AL+TA ++ K +
Sbjct: 460 PRAMHY-----ACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTA----CRIHKNL 510
Query: 352 EV--LSDMKSLGLCPNTI-TYSILL 373
E+ L+ K G+ P + Y +LL
Sbjct: 511 ELGRLAAEKLYGMGPEKLNNYVVLL 535
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 51/233 (21%), Positives = 95/233 (40%), Gaps = 21/233 (9%)
Query: 146 MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV--HPVDPDHITIGALMKACAN 203
M +KP+ V A ++AC + GA+ E++A V + D AL+
Sbjct: 481 MLLTLKPNSVTLIAALSACARIGALMCG----KEIHAHVLRTGIGFDGFLPNALLDLYVR 536
Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
G+++ A + H+ ++ + I + G A +++ M + GV PDEV
Sbjct: 537 CGRMNYAWNQFN-SHEKDVVS----WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT 591
Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHM 322
+L+ +G V E + + I+ + Y+ ++ A +A M
Sbjct: 592 FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651
Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEV--LSDMKSLGLCPNTITYSILL 373
I P A+ AL + ++ + +E+ L+ L PN++ Y ILL
Sbjct: 652 -PITPDP------AVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILL 697
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 45/218 (20%), Positives = 89/218 (40%), Gaps = 21/218 (9%)
Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
E V P+ V F A+++AC SG ++ +++ M +E H + P + +++ G +
Sbjct: 420 EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSM-SENHRIKPRAMHYACMIELLGREGLL 478
Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV-FLSA 266
D E Y MI + K T ++ + C + E + + G P+++
Sbjct: 479 D---EAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG--PEKLNNYVV 533
Query: 267 LIDFAGHAGKVEAAFEILQEAKNQG---------ISVGIISYSSLMGACSNAKNWQKALE 317
L++ +G+ A ++++ K +G I V +S G + ++ + +
Sbjct: 534 LLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQK 593
Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
L E MK I V+ N L+ D +V
Sbjct: 594 LDELMKEISEYGYVAEENELLP-----DVDEDEEKVSG 626
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 4e-04
Identities = 12/50 (24%), Positives = 23/50 (46%)
Query: 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
P + T+N L+ E A ++ +++ G+K + Y+ LI K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 5e-04
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 238
PD +T L+ G+V+ A +++ + K IK Y+I I+ +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 7e-04
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 296 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
+ +Y++L+ A + A + AL + E MK+ LKP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 9e-04
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 364 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
P+ +TY+ L+ +K VE L L ++ K+ G+ PN+ + +I +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.001
Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 12/121 (9%)
Query: 124 KADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFD 175
+ D + L+T GK E V PD V F +L+ AC +SG V + +
Sbjct: 551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLE 610
Query: 176 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 235
M + + P+ ++ AG++ E Y I+K I P V+ +N
Sbjct: 611 YFHSMEEKYS-ITPNLKHYACVVDLLGRAGKLT---EAYNFINKMPITPDPAVWGALLNA 666
Query: 236 C 236
C
Sbjct: 667 C 667
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 297 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
++Y++L+ A ++ALEL++ MK ++P V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 0.001
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 149 NVKPDRVVFNALITACGQSGAVDRAFDVLAEM 180
+KPD V +N LI ++G VD A ++L EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.004
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 8/43 (18%)
Query: 130 YTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITAC 164
Y TLI K GKV+ + +KP+ ++ LI
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 670 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.94 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.94 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.86 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.85 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.81 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.8 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.77 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.76 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.76 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.74 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.71 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.68 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.68 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.67 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.66 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.61 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.6 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.6 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.51 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.51 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.47 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.47 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.45 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.42 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.41 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.39 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.38 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.37 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.35 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.35 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.35 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.35 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.34 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.32 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.28 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.25 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.25 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.24 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.23 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.23 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.22 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.22 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.21 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.11 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.1 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.1 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.08 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.07 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.05 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.04 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.03 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.01 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.0 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.0 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.96 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.95 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.95 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.94 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.92 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.91 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.89 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.88 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 98.86 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.85 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.84 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.82 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.75 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.72 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.71 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.66 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.65 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.64 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.62 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.61 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.59 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.56 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.56 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.56 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.55 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.52 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.51 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.47 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.46 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.43 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.41 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.39 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.37 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.31 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.31 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.27 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.26 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.2 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.2 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.19 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.17 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.15 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.14 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.14 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.12 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.12 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.11 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.09 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.08 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.08 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.07 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.06 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.05 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.05 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.05 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.02 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.0 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.96 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.96 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.96 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.95 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.94 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.94 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.92 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.91 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.91 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.91 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.87 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.87 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.86 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.83 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.81 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.74 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.73 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 97.71 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.68 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 97.67 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.65 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.63 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.6 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.6 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.57 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.56 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.55 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.52 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.52 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.51 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.46 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.41 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.4 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.4 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.34 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.32 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 97.3 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.2 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.2 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.15 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.13 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.12 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.1 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.05 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.03 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.02 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.0 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.99 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.96 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.96 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.93 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.88 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.86 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.85 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.83 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.82 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.81 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.81 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.75 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.68 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.65 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.6 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.59 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 96.56 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.55 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.48 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.42 | |
| smart00463 | 80 | SMR Small MutS-related domain. | 96.24 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.22 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.15 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.14 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.13 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.08 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.07 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.04 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.04 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.98 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 95.9 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 95.73 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.66 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.62 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.57 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.56 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.45 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 95.45 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.4 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 95.37 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.31 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.3 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.3 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.22 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.2 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 94.96 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 94.88 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 94.69 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.63 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 94.63 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 94.6 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 94.53 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.16 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.13 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.06 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.01 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.0 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 93.96 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 93.91 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.88 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.47 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.33 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 93.21 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 93.13 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.04 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 92.91 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 92.67 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 92.51 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 92.2 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 92.02 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 91.94 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 91.85 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 91.67 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 91.59 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 91.47 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 91.32 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 91.06 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 90.82 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.72 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 90.72 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 90.5 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 90.38 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 90.31 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 90.3 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.87 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.62 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 89.59 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 89.59 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 89.49 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 89.37 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 89.05 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 89.04 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 88.82 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 88.75 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 88.71 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 88.6 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 88.48 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 88.05 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 88.0 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 87.99 | |
| PF01713 | 83 | Smr: Smr domain; InterPro: IPR002625 This family i | 87.97 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 87.93 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 87.89 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 87.63 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 87.5 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 87.44 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 87.3 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 87.21 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 87.15 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 87.07 | |
| KOG2034 | 911 | consensus Vacuolar sorting protein PEP3/VPS18 [Int | 86.43 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 86.22 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 85.93 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 85.01 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 84.68 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 84.62 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 84.46 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 84.43 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 84.4 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 83.83 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 83.77 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 83.25 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 82.74 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 82.57 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 82.2 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 82.16 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 80.92 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 80.61 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-109 Score=934.42 Aligned_cols=649 Identities=76% Similarity=1.212 Sum_probs=581.3
Q ss_pred CCCchhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCCCCCHHHHHHHHHH
Q 005905 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSV 101 (670)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~~ 101 (670)
+.+...++..|+.+++.|++++|+++|++|.+.|+.+++..++..++..|.+.|.+++|+++|+.|+.||..+||.+|.+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a 446 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSV 446 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 35688999999999999999999999999999999888888888777777777777777777777766666666666666
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHh---------------------------------
Q 005905 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------------------------------- 148 (670)
Q Consensus 102 ~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~--------------------------------- 148 (670)
|++.|+++.|.++|++|.+.|+.||..+|++||.+|+++|+++.+.+
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 66666666666666666666666666666666666666655554322
Q ss_pred ----------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005905 149 ----------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 218 (670)
Q Consensus 149 ----------~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~ 218 (670)
++.||.++||+||.+|++.|++++|.++|++|...+.++.||.++|+++|.+|++.|++++|.++|++|.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4567777777777777777777777777777765444677888888888888888888888888888888
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHH
Q 005905 219 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 298 (670)
Q Consensus 219 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~ 298 (670)
+.+++|+..+||++|.+|++.|++++|.++|++|.+.|+.||..||+++|++|++.|++++|.++|++|.+.|+.||..+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 88888888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005905 299 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378 (670)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 378 (670)
|++||.+|+++|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|+++|++|...|+.||..||+.++.+|++
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhHHHHHHhHHHhhhhcCCCccchhhhHHHHHHHHHHHHHcCCCCc
Q 005905 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPT 458 (670)
Q Consensus 379 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r~~~~a~~l~~a~~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~P~ 458 (670)
.|++++|.++|++|.+.|+.||..+|++++++|.+.|++|+.+.++...|+.+.+...+.|+.+|+.+|++|++.|+.||
T Consensus 767 ~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd 846 (1060)
T PLN03218 767 KDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPT 846 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCC
Confidence 99999999999999999999999999999999888899999999999999988888889999999999999999999999
Q ss_pred HHHHHHHHhhccCCCchhHHHHHHHhcCCCccccccccchhhhhcccccchHHHHHHHHHHhCCCCCcccccCCCeeecc
Q 005905 459 VEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDA 538 (670)
Q Consensus 459 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~A~~~~~~a~~~g~~p~~~~~~~~~~~~~ 538 (670)
..||..+++|+...++...+..|.+.+++.+...++..|+++++++|.+.++|+.++++|..+|++|+.++..+.|++|.
T Consensus 847 ~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~~~~A~~l~~em~~~Gi~p~~~~~~~~~~~d~ 926 (1060)
T PLN03218 847 MEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEYDPRAFSLLEEAASLGVVPSVSFKKSPIVIDA 926 (1060)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccChHHHHHHHHHHHHcCCCCCcccccCceEEEc
Confidence 99999999999888889999999999999999999999999999999888899999999999999999998877899999
Q ss_pred ccCcchhhHHHHHHHHHHHHHhhhhCCCCCCceEeccCccceeecCCCcchhhhhHhhhHHHHHHHHHhCCCCCCCCccc
Q 005905 539 RKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQGNGSYG 618 (670)
Q Consensus 539 ~~~~~~~~~i~~l~~l~~l~~~~~~~~~~p~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~p~~~~~~~g 618 (670)
+++++++|++++++||++|++++++|.++|++.+++|+++++++|++|+++++.++||+++|++|||||++|||++++.|
T Consensus 927 ~~~~~~aa~~~l~~wl~~~~~~~~~g~~lp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~g 1006 (1060)
T PLN03218 927 EELPVFAAEVYLLTILKGLKHRLAAGAKLPNVTILLPTEKKEIYTPKGEKTINLAGRVGQAVAALLRRLGLPYQGSESHG 1006 (1060)
T ss_pred ccCcchhHHHHHHHHHHHHHHHHhccCcCCcceeeeccccceeeccCCchhHHHHHHHHHHHHHHHHHhCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEechHhHHhhhcCcCCCCCCCCCCCCch--hhhhhhHHHHHhhhhccCCcCC
Q 005905 619 KIRINGLALKRWFQPKLASPFSGKPGELSS--LQLGKFITHQQRNIRTGNLSLE 670 (670)
Q Consensus 619 ~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 670 (670)
||++|++++++|||+|.++||+++|+++++ ++|||+|+|||||||+||+|||
T Consensus 1007 ~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1060 (1060)
T PLN03218 1007 KLRINGLSLRRWFQPKLKSPFSGKPEDLSSSQSRLGKGIADQQRAIRLGNLSLE 1060 (1060)
T ss_pred eEEeccHHHHHHhcccCCCCCCCCccccccchhhhhhhHHHHHHHHhhcCCCCC
Confidence 999999999999999999999999999774 9999999999999999999996
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-67 Score=603.61 Aligned_cols=545 Identities=19% Similarity=0.287 Sum_probs=434.4
Q ss_pred hhHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCchHHH----------------------------------HHHHH
Q 005905 27 EQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVY----------------------------------HARFF 68 (670)
Q Consensus 27 ~~~~~~~~l~----~~g~~~~A~~l~~~m~~~g~~~~~~~~----------------------------------~~~l~ 68 (670)
+++++||.++ +.|++++|+++|++|...|+.|+..++ ...++
T Consensus 150 ~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li 229 (857)
T PLN03077 150 RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI 229 (857)
T ss_pred CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHH
Confidence 3455666655 899999999999999998887754433 23456
Q ss_pred HHHhhhhhHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH----
Q 005905 69 NVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---- 144 (670)
Q Consensus 69 ~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~---- 144 (670)
..|.+.|++++|.++|+.|+.||..+||++|.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++
T Consensus 230 ~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~ 309 (857)
T PLN03077 230 TMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGRE 309 (857)
T ss_pred HHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHH
Confidence 6677889999999999999999999999999999999999999999999999888887777766666665555543
Q ss_pred -------------------------------HHH---h-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCC
Q 005905 145 -------------------------------AMF---E-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 189 (670)
Q Consensus 145 -------------------------------~~~---~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p 189 (670)
++. + ...||.++||+||.+|++.|++++|+++|++|.+. ++.|
T Consensus 310 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~--g~~P 387 (857)
T PLN03077 310 MHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQD--NVSP 387 (857)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCC
Confidence 322 2 23577778888888888888888888888888765 6788
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------------
Q 005905 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK-------------- 255 (670)
Q Consensus 190 d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------------- 255 (670)
|..||++++.+|++.|+++.|.++++.|.+.|+.++..+||+||++|++.|++++|.++|++|.+.
T Consensus 388 d~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~ 467 (857)
T PLN03077 388 DEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRL 467 (857)
T ss_pred CceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 888888888888888888888888888888887777777777777777777777777766665432
Q ss_pred ----------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 005905 256 ----------------GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319 (670)
Q Consensus 256 ----------------g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 319 (670)
++.||..||+++|.+|++.|.++.+.+++..+.+.|+.+|..++|+||++|+++|++++|.++|
T Consensus 468 ~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f 547 (857)
T PLN03077 468 NNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF 547 (857)
T ss_pred CCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHH
Confidence 4567777777777777777777777777777778888888888888889999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCC
Q 005905 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK-EDGVI 398 (670)
Q Consensus 320 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~-~~g~~ 398 (670)
+.+ .||..+||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.++.+|++.|++++|.++|+.|. +.|+.
T Consensus 548 ~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~ 622 (857)
T PLN03077 548 NSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT 622 (857)
T ss_pred Hhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCC
Confidence 887 589999999999999999999999999999999999999999999999999999999999999999 68999
Q ss_pred CCHHHHHHHHHHHHhhHHHHHHhHHHhhhhcCCCccchhhhHHHHHHHHHHHHHcCCCCcHHHHHHHHhhccCCCchhHH
Q 005905 399 PNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIR 478 (670)
Q Consensus 399 p~~~~~~~li~~~~r~~~~a~~l~~a~~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~P~~~~~~~ll~~~~~~~~~~~~ 478 (670)
|+..||+|++++|+| +|.+.+ |.+++++| +++||..+|..+++.|+.+++.++.
T Consensus 623 P~~~~y~~lv~~l~r----~G~~~e-------------------A~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~ 676 (857)
T PLN03077 623 PNLKHYACVVDLLGR----AGKLTE-------------------AYNFINKM---PITPDPAVWGALLNACRIHRHVELG 676 (857)
T ss_pred CchHHHHHHHHHHHh----CCCHHH-------------------HHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHH
Confidence 999999999999887 333333 34455555 4899999999999999999999998
Q ss_pred HHHHHh-cCCCcc-ccccccchhhhhcccccchHHHHHHHHHHhCCCC--CcccccCC----CeeeccccCcchhhHHHH
Q 005905 479 ERLVEN-LGVSAD-ALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIV--PCVSFKEI----PVVVDARKLEIHTAKVYL 550 (670)
Q Consensus 479 ~~~~~~-~~~~~~-~~~~~~~~~l~~~~g~~~~~A~~~~~~a~~~g~~--p~~~~~~~----~~~~~~~~~~~~~~~i~~ 550 (670)
+.+.+. +.+.|+ +..|..+..++...|+|++ |.+++++|.+.|+. |+++|++- +.|+.+|.+||.+.+||.
T Consensus 677 e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~-a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~ 755 (857)
T PLN03077 677 ELAAQHIFELDPNSVGYYILLCNLYADAGKWDE-VARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINT 755 (857)
T ss_pred HHHHHHHHhhCCCCcchHHHHHHHHHHCCChHH-HHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHH
Confidence 887654 556664 4445544567888999986 77999999999996 88888742 567888999999999996
Q ss_pred HHHHHHHHHhhhhCCCCCCceEeccCccceeecCCCcchhhhhHhhhHHHHHHHHHhCCCC
Q 005905 551 LTILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPY 611 (670)
Q Consensus 551 l~~l~~l~~~~~~~~~~p~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~p~ 611 (670)
.|+.|..+|+..||+|+++.++++++. .+.+.....+++|+.+++-+-..=|.|.
T Consensus 756 --~l~~l~~~~~~~g~~~~~~~~~~~~~~----~k~~~~~~hse~la~a~~l~~~~~~~~i 810 (857)
T PLN03077 756 --VLEGFYEKMKASGLAGSESSSMDEIEV----SKDDIFCGHSERLAIAFGLINTVPGMPI 810 (857)
T ss_pred --HHHHHHHHHHhCCcCCCcchhccccHH----HHHHHHHhccHHHHHHHhhhcCCCCCeE
Confidence 999999999999999999888755432 1112223334555655544433434443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-64 Score=568.27 Aligned_cols=505 Identities=19% Similarity=0.281 Sum_probs=451.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC----CCCHHHHHHHHHHHHcCCC
Q 005905 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKD 107 (670)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~y~~li~~~~~~g~ 107 (670)
...+.+.|++++|+++|+.|...+..+++...+..++..|.+.++++.|.+++..|. .||..+||.++.+|++.|+
T Consensus 94 i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~ 173 (697)
T PLN03081 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGM 173 (697)
T ss_pred HHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCC
Confidence 344458999999999999999876334455555668889999999999999998773 6899999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHh--------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005905 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAE 179 (670)
Q Consensus 108 ~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 179 (670)
++.|.++|++|. .||..+|+++|.+|++.|+++++++ ++.||..+|+.++.+|++.|..+.+.+++..
T Consensus 174 ~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~ 249 (697)
T PLN03081 174 LIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCC 249 (697)
T ss_pred HHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHH
Confidence 999999999996 4899999999999999999988654 6789999999999999999999999999999
Q ss_pred HhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 005905 180 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259 (670)
Q Consensus 180 m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 259 (670)
+.+. |+.||..+|++++++|+++|++++|.++|++|.. +|..+||+||.+|++.|++++|+++|++|.+.|+.|
T Consensus 250 ~~~~--g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 250 VLKT--GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHh--CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 9886 6899999999999999999999999999999964 578999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005905 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 339 (670)
Q Consensus 260 ~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 339 (670)
|..||++++.+|++.|++++|.+++..|.+.|+.||..+||+||++|+++|++++|.++|++|. .||..+||+||.
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~ 399 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIA 399 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999997 689999999999
Q ss_pred HHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhhHHHH
Q 005905 340 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE-DGVIPNLVMFKCIIGMCSRRYEKA 418 (670)
Q Consensus 340 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~r~~~~a 418 (670)
+|+++|+.++|+++|++|.+.|+.||.+||++++.+|++.|++++|.++|+.|.+ .|+.|+..+|+++|++|++ +
T Consensus 400 ~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r----~ 475 (697)
T PLN03081 400 GYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR----E 475 (697)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh----c
Confidence 9999999999999999999999999999999999999999999999999999986 7999999999999999887 3
Q ss_pred HHhHHHhhhhcCCCccchhhhHHHHHHHHHHHHHcCCCCcHHHHHHHHhhccCCCchhHHHHHHHh-cCCCcc-cccccc
Q 005905 419 RTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVEN-LGVSAD-ALKRSN 496 (670)
Q Consensus 419 ~~l~~a~~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~P~~~~~~~ll~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~ 496 (670)
|.+.+ |.++|++| ++.|+..+|..++..|..+++.+.++.+.+. +++.|+ ...|..
T Consensus 476 G~~~e-------------------A~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~ 533 (697)
T PLN03081 476 GLLDE-------------------AYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVV 533 (697)
T ss_pred CCHHH-------------------HHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHH
Confidence 33333 33344433 6899999999999888888888887777654 566664 456666
Q ss_pred chhhhhcccccchHHHHHHHHHHhCCCC--CcccccCC----CeeeccccCcchhhHHHHHHHHHHHHHhhhhCCCCCCc
Q 005905 497 LCSLIDGFGEYDPRAFSLLEEAASFGIV--PCVSFKEI----PVVVDARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNV 570 (670)
Q Consensus 497 ~~~l~~~~g~~~~~A~~~~~~a~~~g~~--p~~~~~~~----~~~~~~~~~~~~~~~i~~l~~l~~l~~~~~~~~~~p~~ 570 (670)
+..++...|+|++ |.+++++|.+.|+. |+++|++- +.|+.+|.+||.+.+||. .|+.|..+|+..||+|++
T Consensus 534 L~~~y~~~G~~~~-A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~--~l~~l~~~~~~~gy~~~~ 610 (697)
T PLN03081 534 LLNLYNSSGRQAE-AAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQ--KLDELMKEISEYGYVAEE 610 (697)
T ss_pred HHHHHHhCCCHHH-HHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHH--HHHHHHHHHHHcCCCCCc
Confidence 6667788898875 88999999999985 88888642 467888999999999995 999999999999999999
Q ss_pred eEeccCccc
Q 005905 571 NILLPVEKT 579 (670)
Q Consensus 571 ~~~l~~~~~ 579 (670)
..++++.+.
T Consensus 611 ~~~~~~~~~ 619 (697)
T PLN03081 611 NELLPDVDE 619 (697)
T ss_pred chhhccccH
Confidence 998877654
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-58 Score=534.65 Aligned_cols=486 Identities=19% Similarity=0.300 Sum_probs=396.5
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHH----------------------------------HHHHHHH
Q 005905 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYH----------------------------------ARFFNVC 71 (670)
Q Consensus 26 ~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~----------------------------------~~l~~~~ 71 (670)
.........+++.|++++|+++|++|.+.|+.|....+. ..++..|
T Consensus 52 ~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~ 131 (857)
T PLN03077 52 HDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMF 131 (857)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHH
Confidence 334455566779999999999999999988755443321 2344556
Q ss_pred hhhhhHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHH--------------------
Q 005905 72 KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT-------------------- 131 (670)
Q Consensus 72 ~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~-------------------- 131 (670)
.+.|+++.|.++|+.|++||+.+||++|.+|++.|++++|+++|++|...|+.||.+||+
T Consensus 132 ~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~ 211 (857)
T PLN03077 132 VRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHA 211 (857)
T ss_pred HhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHH
Confidence 778899999999999999999999999999999999999999999999999988877774
Q ss_pred ---------------HHHHHHHhcCCHHHHH---hc-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHH
Q 005905 132 ---------------TLITTCAKSGKVDAMF---EN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192 (670)
Q Consensus 132 ---------------~li~~~~~~g~~~~~~---~~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~ 192 (670)
+||.+|+++|+++.+. +. ..||.++||+||.+|++.|++++|+++|.+|... |+.||.+
T Consensus 212 ~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~--g~~Pd~~ 289 (857)
T PLN03077 212 HVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMREL--SVDPDLM 289 (857)
T ss_pred HHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCChh
Confidence 5556667777776643 33 4689999999999999999999999999999885 6888888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-------------------------------HHHHhcCC
Q 005905 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI-------------------------------NCCSQTGD 241 (670)
Q Consensus 193 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li-------------------------------~~~~~~g~ 241 (670)
||+.++.+|++.|+++.|.+++..|.+.|+.||..+||+|| .+|++.|+
T Consensus 290 ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~ 369 (857)
T PLN03077 290 TITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGL 369 (857)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCC
Confidence 88888888888777777777777777777766666555555 45555555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005905 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321 (670)
Q Consensus 242 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 321 (670)
+++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+||+||++|+++|++++|.++|++
T Consensus 370 ~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~ 449 (857)
T PLN03077 370 PDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHN 449 (857)
T ss_pred HHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66666666677777888888888888888888888888888888888888888888889999999999999999999998
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 005905 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 401 (670)
Q Consensus 322 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~ 401 (670)
|. .+|.++||+||.+|++.|+.++|+++|++|.. ++.||..||+.++.+|++.|.++.+.+++..|.+.|+.++.
T Consensus 450 m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~ 524 (857)
T PLN03077 450 IP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDG 524 (857)
T ss_pred CC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccc
Confidence 87 57888999999999999999999999999986 58999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHhHHHhhhhcCCCccchhhhHH------------HHHHHHHHHHHcCCCCcHHHHHHHH-hh
Q 005905 402 VMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTS------------LALMVYREAIVAGTIPTVEVVSKVL-GC 468 (670)
Q Consensus 402 ~~~~~li~~~~r~~~~a~~l~~a~~~~~~~~~~~~~~~~~------------~A~~~~~~m~~~~~~P~~~~~~~ll-~~ 468 (670)
.++++||++|++ +|++.+|...|+.+ ..+...|+. +|+++|++|.+.|+.||..||..++ +|
T Consensus 525 ~~~naLi~~y~k----~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 599 (857)
T PLN03077 525 FLPNALLDLYVR----CGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCAC 599 (857)
T ss_pred eechHHHHHHHH----cCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Confidence 999999999665 56666666666666 556667774 6999999999999999999999998 55
Q ss_pred ccCC---CchhHHHHHHHhcCCCccccccccchhhhhcccccchHHHHHHHHHHhCCCCCcc
Q 005905 469 LQLP---YNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCV 527 (670)
Q Consensus 469 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~A~~~~~~a~~~g~~p~~ 527 (670)
++.+ +..++++.|.+..++.|+..+|..++.++...|+++ +|.+++++| .+.|+.
T Consensus 600 ~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~-eA~~~~~~m---~~~pd~ 657 (857)
T PLN03077 600 SRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLT-EAYNFINKM---PITPDP 657 (857)
T ss_pred hhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHH-HHHHHHHHC---CCCCCH
Confidence 5543 345567777778899999999986555555556544 698999887 456764
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-56 Score=503.93 Aligned_cols=439 Identities=22% Similarity=0.374 Sum_probs=387.2
Q ss_pred hhHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC----CCCHHHHHHH
Q 005905 27 EQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNML 98 (670)
Q Consensus 27 ~~~~~~~~l~----~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~y~~l 98 (670)
|+..+|+.++ +.|++++|.++|++|.+.|+.|+...+ ..++..|.+.|++++|.++|+.|. .||..+||.|
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~ty-nsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaL 513 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLY-TTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL 513 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 5566666655 799999999999999999987655554 458889999999999999999986 6999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHh----------cCCCCHHHHHHHHHHHHhcC
Q 005905 99 MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE----------NVKPDRVVFNALITACGQSG 168 (670)
Q Consensus 99 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~----------~~~~~~~~~~~li~~~~~~g 168 (670)
|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|+++++++ ++.||.++|++||.+|++.|
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999987654 36899999999999999999
Q ss_pred CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005905 169 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248 (670)
Q Consensus 169 ~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 248 (670)
++++|.++|++|.+. ++.|+..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|++|++.|++++|.++
T Consensus 594 ~ldeA~elf~~M~e~--gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l 671 (1060)
T PLN03218 594 QVDRAKEVYQMIHEY--NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI 671 (1060)
T ss_pred CHHHHHHHHHHHHHc--CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 999999999999986 789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 005905 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328 (670)
Q Consensus 249 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 328 (670)
|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|.+.|+.
T Consensus 672 ~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~ 751 (1060)
T PLN03218 672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC 751 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c-------------------CCHHHH
Q 005905 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER----K-------------------DDVEVG 385 (670)
Q Consensus 329 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~-------------------g~~~~a 385 (670)
||..||+++|.+|++.|++++|.++|.+|.+.|+.||..+|++++..|.+ . +..++|
T Consensus 752 Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~A 831 (1060)
T PLN03218 752 PNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWA 831 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHH
Confidence 99999999999999999999999999999999999999999999976542 1 224679
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhhHHHHHHhHHHhhhhcCCCccchhhhHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 005905 386 LMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKV 465 (670)
Q Consensus 386 ~~~~~~m~~~g~~p~~~~~~~li~~~~r~~~~a~~l~~a~~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~P~~~~~~~l 465 (670)
..+|++|++.|+.||..+|+.+|..+.. .+ ....+..++++|...+..|+..++..+
T Consensus 832 l~lf~eM~~~Gi~Pd~~T~~~vL~cl~~----~~-------------------~~~~~~~m~~~m~~~~~~~~~~~y~~L 888 (1060)
T PLN03218 832 LMVYRETISAGTLPTMEVLSQVLGCLQL----PH-------------------DATLRNRLIENLGISADSQKQSNLSTL 888 (1060)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhcc----cc-------------------cHHHHHHHHHHhccCCCCcchhhhHHH
Confidence 9999999999999999999999965422 00 112344566666666777777788777
Q ss_pred Hhhc-cC-CCchhHHHHHHHhcCCCcccc
Q 005905 466 LGCL-QL-PYNADIRERLVENLGVSADAL 492 (670)
Q Consensus 466 l~~~-~~-~~~~~~~~~~~~~~~~~~~~~ 492 (670)
+.++ .. ++...+.+.|. ..|+.|+..
T Consensus 889 i~g~~~~~~~A~~l~~em~-~~Gi~p~~~ 916 (1060)
T PLN03218 889 VDGFGEYDPRAFSLLEEAA-SLGVVPSVS 916 (1060)
T ss_pred HHhhccChHHHHHHHHHHH-HcCCCCCcc
Confidence 7433 22 12333333332 356777543
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-53 Score=475.70 Aligned_cols=402 Identities=18% Similarity=0.238 Sum_probs=364.6
Q ss_pred cccccCCCCCccccCCCchhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhC
Q 005905 8 MLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87 (670)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 87 (670)
++.++.+......+.++...+.....++.+.++++.|.+++..|.+.|+.|+. .++..++..+.+.|++++|.++|+.|
T Consensus 106 Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~-~~~n~Li~~y~k~g~~~~A~~lf~~m 184 (697)
T PLN03081 106 ALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQ-YMMNRVLLMHVKCGMLIDARRLFDEM 184 (697)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcch-HHHHHHHHHHhcCCCHHHHHHHHhcC
Confidence 34444444443344555555555555566889999999999999999987754 44555789999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHh--------cCCCCHHHHHH
Q 005905 88 PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNA 159 (670)
Q Consensus 88 ~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~--------~~~~~~~~~~~ 159 (670)
+.||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.+.+ ++.||..+||+
T Consensus 185 ~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~ 264 (697)
T PLN03081 185 PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCA 264 (697)
T ss_pred CCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHH
Confidence 9999999999999999999999999999999999999999999999999999998876433 67899999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 005905 160 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 239 (670)
Q Consensus 160 li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 239 (670)
||++|++.|++++|.++|++|. .+|.++|+++|.+|++.|++++|.++|++|.+.|+.||..+|++++.+|++.
T Consensus 265 Li~~y~k~g~~~~A~~vf~~m~------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~ 338 (697)
T PLN03081 265 LIDMYSKCGDIEDARCVFDGMP------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL 338 (697)
T ss_pred HHHHHHHCCCHHHHHHHHHhCC------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999995 4689999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 005905 240 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319 (670)
Q Consensus 240 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 319 (670)
|++++|.+++..|.+.|+.||..+|++||++|++.|++++|.++|++|. .+|..+||+||.+|++.|+.++|.++|
T Consensus 339 g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf 414 (697)
T PLN03081 339 ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMF 414 (697)
T ss_pred cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999986 468999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 005905 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS-LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 398 (670)
Q Consensus 320 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~ 398 (670)
++|.+.|+.||..||+++|.+|++.|..++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| ++.
T Consensus 415 ~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~ 491 (697)
T PLN03081 415 ERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFK 491 (697)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCC
Confidence 9999999999999999999999999999999999999986 699999999999999999999999999998754 789
Q ss_pred CCHHHHHHHHHHHHh--hHHHHHHhHH
Q 005905 399 PNLVMFKCIIGMCSR--RYEKARTLNE 423 (670)
Q Consensus 399 p~~~~~~~li~~~~r--~~~~a~~l~~ 423 (670)
|+..+|++|+.+|.. .++.+....+
T Consensus 492 p~~~~~~~Ll~a~~~~g~~~~a~~~~~ 518 (697)
T PLN03081 492 PTVNMWAALLTACRIHKNLELGRLAAE 518 (697)
T ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 999999999999876 4555544433
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.9e-22 Score=231.80 Aligned_cols=472 Identities=15% Similarity=0.074 Sum_probs=251.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCCHHH
Q 005905 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEG 110 (670)
Q Consensus 34 ~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~g~~~~ 110 (670)
.+.+.|++++|++.++++.... |.+......+...+...|++++|.++|+.+. +.+...|..+...+...|++++
T Consensus 338 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 415 (899)
T TIGR02917 338 IQLRLGRVDEAIATLSPALGLD--PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSE 415 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHH
Confidence 3345666666666666655544 3333344444555555556666665555432 2233444444455555555555
Q ss_pred HHHHHHHHHHcC---------------------------------CCCCHHHHHHHHHHHHhcCCHHHHHh-------cC
Q 005905 111 AFQVLRLVQEAG---------------------------------LKADCKLYTTLITTCAKSGKVDAMFE-------NV 150 (670)
Q Consensus 111 A~~~~~~m~~~g---------------------------------~~pd~~~~~~li~~~~~~g~~~~~~~-------~~ 150 (670)
|...|+.+.+.. .+++..++..+..+|...|+++++.+ ..
T Consensus 416 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 495 (899)
T TIGR02917 416 AIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE 495 (899)
T ss_pred HHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Confidence 555555444432 22344455555555555555544322 11
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 005905 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 230 (670)
Q Consensus 151 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 230 (670)
+.+...+..+...+...|++++|.+.|+++.... +.+..++..+...+.+.|+.++|..+++++.+.+ +.+...+.
T Consensus 496 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 571 (899)
T TIGR02917 496 PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID---PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPAL 571 (899)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHH
Confidence 2334445555555555555555555555555431 2234455555555556666666666666555543 34445555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC
Q 005905 231 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310 (670)
Q Consensus 231 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g 310 (670)
.++..|.+.|++++|..+++++.+.. +.+..+|..+..+|...|++++|...++.+.+.. +.+...+..+..+|.+.|
T Consensus 572 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 649 (899)
T TIGR02917 572 ALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMK 649 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcC
Confidence 66666666666666666666665543 2355566666666666666666666666666543 334555666666666666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005905 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 390 (670)
Q Consensus 311 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 390 (670)
++++|..+|+++.+.. +.+..+|..++..+...|++++|.++++.+.+.. +++...+..+...+...|++++|...|+
T Consensus 650 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 727 (899)
T TIGR02917 650 NYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYR 727 (899)
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7777766666666543 2346666666667777777777777777766653 3455566666666677777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh--hHHHHHHhHHHhhhhcCCCccc---------hhhhHHHHHHHHHHHHHcCCCCcH
Q 005905 391 QAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQI---------ENKWTSLALMVYREAIVAGTIPTV 459 (670)
Q Consensus 391 ~m~~~g~~p~~~~~~~li~~~~r--~~~~a~~l~~a~~~~~~~~~~~---------~~~~~~~A~~~~~~m~~~~~~P~~ 459 (670)
.+...+ |+..++..+..++.+ ++++|....+......+..+.. ..+-..+|+..|+++++. .|+.
T Consensus 728 ~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~ 803 (899)
T TIGR02917 728 KALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDN 803 (899)
T ss_pred HHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCC
Confidence 666643 444445455555443 4444444333222211111100 011123577777777764 3444
Q ss_pred HHHHHHHhh--ccCCCchhHHHHHHHhcCCCccc-cccccchhhhhcccccchHHHHHHHHHHhC
Q 005905 460 EVVSKVLGC--LQLPYNADIRERLVENLGVSADA-LKRSNLCSLIDGFGEYDPRAFSLLEEAASF 521 (670)
Q Consensus 460 ~~~~~ll~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~g~~~~~A~~~~~~a~~~ 521 (670)
......++. ...+. .+..+.+.+.+...|+. ..+..+..++...|+++ +|.+.++++++.
T Consensus 804 ~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~A~~~~~~a~~~ 866 (899)
T TIGR02917 804 AVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEAD-RALPLLRKAVNI 866 (899)
T ss_pred HHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH-HHHHHHHHHHhh
Confidence 332222222 22222 44444444444444432 22223334445556654 477788877765
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-21 Score=230.49 Aligned_cols=436 Identities=14% Similarity=0.063 Sum_probs=337.8
Q ss_pred HHHHHhhhhhHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 005905 67 FFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143 (670)
Q Consensus 67 l~~~~~~~~~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~ 143 (670)
++..+...|++++|+.+++.+. +++..+|+.+...+...|++++|...|+++.+.. +.+...+..+...+...|++
T Consensus 437 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~ 515 (899)
T TIGR02917 437 LILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNP 515 (899)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCH
Confidence 3344445566666666665542 3467789999999999999999999999998764 34566788889999999998
Q ss_pred HHHHh-------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005905 144 DAMFE-------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 216 (670)
Q Consensus 144 ~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~ 216 (670)
+++.+ ..+.+..++..+...|.+.|+.++|..+|+++.... +.+...+..++..+...|++++|..+++.
T Consensus 516 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 592 (899)
T TIGR02917 516 DDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN---PQEIEPALALAQYYLGKGQLKKALAILNE 592 (899)
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---ccchhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 87544 334578889999999999999999999999997752 34566778889999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccH
Q 005905 217 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296 (670)
Q Consensus 217 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~ 296 (670)
+.+.. +.+..+|..+..+|.+.|++++|...|+++.+... .+...+..+..++...|++++|..+++.+.+.. +.+.
T Consensus 593 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 669 (899)
T TIGR02917 593 AADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNT 669 (899)
T ss_pred HHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCH
Confidence 98754 66788999999999999999999999999987653 366788889999999999999999999998865 5568
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005905 297 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376 (670)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 376 (670)
.++..++..+...|++++|.++++.+.+.. +.+...+..+...+...|++++|++.|+++... .|+..++..+..++
T Consensus 670 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 746 (899)
T TIGR02917 670 EAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRAL 746 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHH
Confidence 889999999999999999999999998776 457788888999999999999999999999885 46667888889999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--hHHHHHHhHHHhhhhcCCCccchhhhH-----------HHH
Q 005905 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWT-----------SLA 443 (670)
Q Consensus 377 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r--~~~~a~~l~~a~~~~~~~~~~~~~~~~-----------~~A 443 (670)
.+.|++++|.+.++.+.+.. +.+...+..+...|.+ ++++|....+......+ .....+. .+|
T Consensus 747 ~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~~~~~A 822 (899)
T TIGR02917 747 LASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP---DNAVVLNNLAWLYLELKDPRA 822 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhcCcHHH
Confidence 99999999999999988754 4566777777777664 67777666554433322 2211111 358
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHhhc--cCCCchhHHHHHHHhcCCCc-cccccccchhhhhcccccchHHHHHHHHHH
Q 005905 444 LMVYREAIVAGTIPTVEVVSKVLGCL--QLPYNADIRERLVENLGVSA-DALKRSNLCSLIDGFGEYDPRAFSLLEEAA 519 (670)
Q Consensus 444 ~~~~~~m~~~~~~P~~~~~~~ll~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~g~~~~~A~~~~~~a~ 519 (670)
+.++++++. ..|+...+...++.. ..+.-.+..+.+.+.+...| ++..+.++...+...|+++ +|..++++++
T Consensus 823 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~ 898 (899)
T TIGR02917 823 LEYAEKALK--LAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKA-EARKELDKLL 898 (899)
T ss_pred HHHHHHHHh--hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHH-HHHHHHHHHh
Confidence 899999886 456665544444433 34444555555556555555 5555555566677778765 4888888775
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.6e-19 Score=186.62 Aligned_cols=300 Identities=15% Similarity=0.088 Sum_probs=226.3
Q ss_pred HhhhhhHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005905 71 CKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147 (670)
Q Consensus 71 ~~~~~~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~ 147 (670)
....|++++|+..|+.+. +.+..+|..+...+...|++++|..+++.+...+..++..
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~------------------- 105 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ------------------- 105 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH-------------------
Confidence 345677888888887764 3355678888888999999999999999888753221111
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--
Q 005905 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT-- 225 (670)
Q Consensus 148 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-- 225 (670)
+...+..+...|.+.|++++|..+|+++.+. -.++..++..++..+.+.|++++|.+.++.+.+.+..+.
T Consensus 106 -----~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 177 (389)
T PRK11788 106 -----RLLALQELGQDYLKAGLLDRAEELFLQLVDE---GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV 177 (389)
T ss_pred -----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC---CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH
Confidence 1124566777788888888888888888764 234567888888888888888888888888877653322
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHH
Q 005905 226 --PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303 (670)
Q Consensus 226 --~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li 303 (670)
...+..+...+.+.|++++|...|+++.+.... +...+..+...+.+.|++++|.++++++.+.+......+++.++
T Consensus 178 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~ 256 (389)
T PRK11788 178 EIAHFYCELAQQALARGDLDAARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLM 256 (389)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHH
Confidence 124566777888888999999988888876432 45577778888888899999999888888764333346678888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cC
Q 005905 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER---KD 380 (670)
Q Consensus 304 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~---~g 380 (670)
.+|.+.|++++|...++++.+. .|+...+..++..+.+.|++++|..+|+++.+. .|+..++..++..+.. .|
T Consensus 257 ~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g 332 (389)
T PRK11788 257 ECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEG 332 (389)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCc
Confidence 8888999999999998888776 356566688888888899999999999888774 6888888887777654 45
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH
Q 005905 381 DVEVGLMLLSQAKEDGVIPNLV 402 (670)
Q Consensus 381 ~~~~a~~~~~~m~~~g~~p~~~ 402 (670)
+.+++..++++|.+.++.|++.
T Consensus 333 ~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 333 RAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred cchhHHHHHHHHHHHHHhCCCC
Confidence 8888888888888877776665
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.1e-18 Score=181.43 Aligned_cols=241 Identities=18% Similarity=0.188 Sum_probs=116.0
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 005905 163 ACGQSGAVDRAFDVLAEMNAEVHPVDP--DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 240 (670)
Q Consensus 163 ~~~~~g~~~~A~~l~~~m~~~~~~~~p--d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 240 (670)
.|.+.|++++|..+++.+.... ...+ ....+..+...|.+.|++++|..+|+++.+.. +.+..+++.++..|.+.|
T Consensus 78 ~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g 155 (389)
T PRK11788 78 LFRRRGEVDRAIRIHQNLLSRP-DLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEK 155 (389)
T ss_pred HHHHcCcHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhc
Confidence 3344444555555555554421 0000 01234445555555555555555555555432 333445555555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHH
Q 005905 241 DWEFACSVYDDMTKKGVIPDE----VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316 (670)
Q Consensus 241 ~~~~A~~l~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 316 (670)
++++|.+.++.+.+.+..++. ..+..+...+...|++++|...++++.+.. +.+...+..+...|.+.|++++|.
T Consensus 156 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~ 234 (389)
T PRK11788 156 DWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAI 234 (389)
T ss_pred hHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHH
Confidence 555555555555544332211 123344444555555555555555555432 223344445555555555555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005905 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396 (670)
Q Consensus 317 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g 396 (670)
++|+++.+.+......+++.++.+|...|+.++|...++++.+. .|+...+..+...+.+.|++++|..+++++.+.
T Consensus 235 ~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~- 311 (389)
T PRK11788 235 EALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR- 311 (389)
T ss_pred HHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh-
Confidence 55555554322111334455555555555555555555555543 344444445555555555555555555555443
Q ss_pred CCCCHHHHHHHHHH
Q 005905 397 VIPNLVMFKCIIGM 410 (670)
Q Consensus 397 ~~p~~~~~~~li~~ 410 (670)
.|+...+..++..
T Consensus 312 -~P~~~~~~~l~~~ 324 (389)
T PRK11788 312 -HPSLRGFHRLLDY 324 (389)
T ss_pred -CcCHHHHHHHHHH
Confidence 3555555544443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.6e-16 Score=171.37 Aligned_cols=336 Identities=10% Similarity=0.015 Sum_probs=230.9
Q ss_pred HHHHHhhhhhHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 005905 67 FFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143 (670)
Q Consensus 67 l~~~~~~~~~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~ 143 (670)
++..+.+.|++++|+.+++... +.+...+..++.++...|++++|...|+++.+.. +.+...+..+...+...|++
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCH
Confidence 3444455566666666655431 2223334444445555666666666666666542 22344555556666666666
Q ss_pred HHHHh------cC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005905 144 DAMFE------NV-KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 216 (670)
Q Consensus 144 ~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~ 216 (670)
+++.+ .. +.+...+..+...+...|++++|...++.+... .|+.......+..+...|++++|...++.
T Consensus 127 ~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~----~P~~~~a~~~~~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 127 ATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE----VPPRGDMIATCLSFLNKSRLPEDHDLARA 202 (656)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 65443 12 234667778888889999999999999888654 33322222223347788999999999988
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH----HHHHHHHHHHCCC
Q 005905 217 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA----AFEILQEAKNQGI 292 (670)
Q Consensus 217 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~----A~~i~~~m~~~~~ 292 (670)
+.+....++...+..+..++.+.|++++|...|++..+.... +...+..+...+...|++++ |...++.+.+..
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~- 280 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN- 280 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-
Confidence 877653344455566677888999999999999998877543 66777788888999999885 788899888765
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHH-HHH
Q 005905 293 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT-YSI 371 (670)
Q Consensus 293 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ 371 (670)
+.+..++..+...+.+.|++++|...+++..+..+ .+...+..+..+|.+.|++++|+..|+++... .|+... +..
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~ 357 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRY 357 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHH
Confidence 45677888999999999999999999999887653 35667778888999999999999999998874 465544 333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005905 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412 (670)
Q Consensus 372 ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 412 (670)
+..++...|+.++|...|++..+..-.-....|.-.+..|.
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~ 398 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALD 398 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHH
Confidence 45678889999999999998877532222344444444433
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.3e-16 Score=156.92 Aligned_cols=417 Identities=13% Similarity=0.125 Sum_probs=307.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhh---CCCCCHHHHHHHHHHHHcCCCH
Q 005905 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL---VPNPTLSTFNMLMSVCASSKDS 108 (670)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~y~~li~~~~~~g~~ 108 (670)
-..+-+.|++.+|.+.....-+.+ |.+.....++...+.+..+.+.....-.. ..+.-..+|..+.+.+-..|++
T Consensus 55 ah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~ 132 (966)
T KOG4626|consen 55 AHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQL 132 (966)
T ss_pred HHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchH
Confidence 334447899999999888777666 44443333344444444444443322111 1233467899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHh------cCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHh
Q 005905 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE------NVKPDRVVFNA-LITACGQSGAVDRAFDVLAEMN 181 (670)
Q Consensus 109 ~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~------~~~~~~~~~~~-li~~~~~~g~~~~A~~l~~~m~ 181 (670)
++|+.+|+.+++.. +-....|..+..++...|+.+.+++ .+.|+.....+ +....-..|++++|...|.+..
T Consensus 133 ~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi 211 (966)
T KOG4626|consen 133 QDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAI 211 (966)
T ss_pred HHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHH
Confidence 99999999999863 2256789999999999999887655 35676665443 4445556899999999999988
Q ss_pred hCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 005905 182 AEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260 (670)
Q Consensus 182 ~~~~~~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 260 (670)
+. .|. .+.|+.|...+-..|+...|++.|++..+.+ +.-...|-.|-..|...+.+++|...|.+....... .
T Consensus 212 ~~----qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn-~ 285 (966)
T KOG4626|consen 212 ET----QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN-H 285 (966)
T ss_pred hh----CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc-c
Confidence 74 444 5678899999999999999999999998865 444678999999999999999999999888766432 5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005905 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 340 (670)
Q Consensus 261 ~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 340 (670)
.+.+..+...|-.+|.++.|...|++..+.. +--...||.|..++-..|++.+|.+.|.+..... .....+.+.|...
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni 363 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNI 363 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 6778888888999999999999999998865 3336789999999999999999999999988764 2356788999999
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---hhHH
Q 005905 341 LCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS---RRYE 416 (670)
Q Consensus 341 ~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~---r~~~ 416 (670)
|...|++++|..+|....+ +.|. ...++.|...|..+|++++|+..+++.+. |.|+. .++|. ..|.
T Consensus 364 ~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~f------Ada~~NmGnt~k 433 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTF------ADALSNMGNTYK 433 (966)
T ss_pred HHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchH------HHHHHhcchHHH
Confidence 9999999999999999876 4565 46688888999999999999999998876 56653 22322 2355
Q ss_pred HHHHhHHHhhhhcCCCccchhhhHHHHHHHHHHHHHcCCCCcHHHHHHHHhhcc--CCCchhHHHHHHHhcCCCcc
Q 005905 417 KARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQ--LPYNADIRERLVENLGVSAD 490 (670)
Q Consensus 417 ~a~~l~~a~~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~P~~~~~~~ll~~~~--~~~~~~~~~~~~~~~~~~~~ 490 (670)
+-+++..| +..|.+.+. +.|.-.-..+-|+..+ .+.-.+......+.+.+.||
T Consensus 434 e~g~v~~A-------------------~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 434 EMGDVSAA-------------------IQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HhhhHHHH-------------------HHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 55555444 344444443 4555443333343333 22334455555666666665
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.4e-14 Score=158.11 Aligned_cols=376 Identities=11% Similarity=-0.013 Sum_probs=261.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCCHH
Q 005905 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSE 109 (670)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~g~~~ 109 (670)
+.+.+.|++++|+..|++..+.. |. ..++..+...+...|++++|++.+.... +.+...|..+..++...|+++
T Consensus 135 ~~~~~~~~~~~Ai~~y~~al~~~--p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 135 NKAYRNKDFNKAIKLYSKAIECK--PD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYA 211 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC--Cc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Confidence 45558899999999999998765 54 4455567778888999999999988653 446778999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CCHHHHHhcCCCCH---------------------------------
Q 005905 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKS--GKVDAMFENVKPDR--------------------------------- 154 (670)
Q Consensus 110 ~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~--g~~~~~~~~~~~~~--------------------------------- 154 (670)
+|+.-|......+-..+......+...+.+. ......++..+++.
T Consensus 212 eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (615)
T TIGR00990 212 DALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETG 291 (615)
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccc
Confidence 9998887665443211211111111111100 00001111100000
Q ss_pred HHHHHHHHH---HHhcCCHHHHHHHHHHHhhCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 005905 155 VVFNALITA---CGQSGAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 230 (670)
Q Consensus 155 ~~~~~li~~---~~~~g~~~~A~~l~~~m~~~~~~~~p-d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 230 (670)
..+..+... ....+++++|++.|+.....+ ...| +...+..+...+...|++++|...|+...+.. +.+...|.
T Consensus 292 ~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~-~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~ 369 (615)
T TIGR00990 292 NGQLQLGLKSPESKADESYEEAARAFEKALDLG-KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYI 369 (615)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHH
Confidence 000111101 122367899999999988652 2234 34567777888889999999999999988765 44567888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC
Q 005905 231 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310 (670)
Q Consensus 231 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g 310 (670)
.+...+...|++++|...|++..+.... +..+|..+...+...|++++|...|+...+.. +.+...+..+..+|.+.|
T Consensus 370 ~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g 447 (615)
T TIGR00990 370 KRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEG 447 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCC
Confidence 8899999999999999999999887543 67788889999999999999999999998875 456777888889999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC-------HH-HHHHHHHHHHhcCCH
Q 005905 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-------TI-TYSILLVACERKDDV 382 (670)
Q Consensus 311 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-------~~-t~~~ll~a~~~~g~~ 382 (670)
++++|...|++..+.. +.+...|+.+...+...|++++|++.|++..+. .|+ .. .+...+..+...|++
T Consensus 448 ~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~~~~~ 524 (615)
T TIGR00990 448 SIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALALFQWKQDF 524 (615)
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHHHHHHhhhH
Confidence 9999999999987654 336788899999999999999999999998764 232 11 111122223446999
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh--hHHHHHH
Q 005905 383 EVGLMLLSQAKEDGVIPNL-VMFKCIIGMCSR--RYEKART 420 (670)
Q Consensus 383 ~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~r--~~~~a~~ 420 (670)
++|.+++++..+.. |+. ..+..+..++.+ ++++|..
T Consensus 525 ~eA~~~~~kAl~l~--p~~~~a~~~la~~~~~~g~~~eAi~ 563 (615)
T TIGR00990 525 IEAENLCEKALIID--PECDIAVATMAQLLLQQGDVDEALK 563 (615)
T ss_pred HHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHccCHHHHHH
Confidence 99999999887754 443 345555555443 3444433
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-15 Score=154.81 Aligned_cols=392 Identities=15% Similarity=0.139 Sum_probs=301.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCCHHHHHH
Q 005905 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQ 113 (670)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~g~~~~A~~ 113 (670)
+..+++...+--....+.. |.....+..+.......|++++|+++++.+. +..+..|-.+..++...|+.+.|.+
T Consensus 94 q~~r~d~s~a~~~~a~r~~--~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~ 171 (966)
T KOG4626|consen 94 QGSRLDKSSAGSLLAIRKN--PQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQ 171 (966)
T ss_pred cccchhhhhhhhhhhhhcc--chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHH
Confidence 4455665555544444444 6667777778889999999999999998764 3467889999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHH-HHHHHHHhcCCHHHHHh------cCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 005905 114 VLRLVQEAGLKADCKLYT-TLITTCAKSGKVDAMFE------NVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185 (670)
Q Consensus 114 ~~~~m~~~g~~pd~~~~~-~li~~~~~~g~~~~~~~------~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 185 (670)
.|.+.++. .|+.+... .+-......|+++++.. ..+| -.+.|+.|...+-..|++..|+..|++..+.
T Consensus 172 ~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl-- 247 (966)
T KOG4626|consen 172 CFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL-- 247 (966)
T ss_pred HHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--
Confidence 99998874 57665433 33444445677666443 2234 3578999999999999999999999999864
Q ss_pred CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 005905 186 PVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264 (670)
Q Consensus 186 ~~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 264 (670)
.|+ ...|..|...|...+.+++|...|....... +....++..|...|...|+.+.|+..|++.++.... =...|
T Consensus 248 --dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay 323 (966)
T KOG4626|consen 248 --DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAY 323 (966)
T ss_pred --CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHH
Confidence 555 4578889999999999999999998887654 455678888888999999999999999999887433 34689
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHh
Q 005905 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT-VSTMNALITALCD 343 (670)
Q Consensus 265 ~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~ 343 (670)
+.|..++-..|++.+|.+.|....... +......+.|...|...|.+++|..+|....+. .|. ...+|.|...|-+
T Consensus 324 ~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kq 400 (966)
T KOG4626|consen 324 NNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQ 400 (966)
T ss_pred hHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHh
Confidence 999999999999999999999998865 445678889999999999999999999988765 333 5678899999999
Q ss_pred CCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhhHHHHHHh
Q 005905 344 GDQLPKTMEVLSDMKSLGLCPNT-ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL-VMFKCIIGMCSRRYEKARTL 421 (670)
Q Consensus 344 ~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~r~~~~a~~l 421 (670)
+|++++|+..+++..+ +.|+. ..|+.+-..|...|+++.|.+.+.+.+..+ |.. ..++-|-.. +.++|.+
T Consensus 401 qgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n--Pt~AeAhsNLasi----~kDsGni 472 (966)
T KOG4626|consen 401 QGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN--PTFAEAHSNLASI----YKDSGNI 472 (966)
T ss_pred cccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC--cHHHHHHhhHHHH----hhccCCc
Confidence 9999999999999887 68874 678888888999999999999998888744 542 222233333 5555655
Q ss_pred HHHhhhhcCCCccchhhhHHHHHHHHHHHHHcCCCCcHH-HHHHHHhhcc
Q 005905 422 NEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVE-VVSKVLGCLQ 470 (670)
Q Consensus 422 ~~a~~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~P~~~-~~~~ll~~~~ 470 (670)
.+ |+..|++.++ ++||.. .+..++-|.+
T Consensus 473 ~~-------------------AI~sY~~aLk--lkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 473 PE-------------------AIQSYRTALK--LKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HH-------------------HHHHHHHHHc--cCCCCchhhhHHHHHHH
Confidence 54 4555666654 677753 3445554444
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-13 Score=162.94 Aligned_cols=485 Identities=14% Similarity=0.072 Sum_probs=239.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHH-HHHHHHHhhhhhHHHHHHHhhhCC---CCCHHHHHHHHHHHHc
Q 005905 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYH-ARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCAS 104 (670)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~y~~li~~~~~ 104 (670)
+..-..+.+.|++++|++.|+.+.+.+ |++..+. ..........++.++|++.++.+. +.+...+..+...+..
T Consensus 116 l~~A~ll~~~g~~~eA~~~~~~~l~~~--p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~ 193 (1157)
T PRK11447 116 LQQARLLATTGRTEEALASYDKLFNGA--PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFS 193 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHccCC--CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHc
Confidence 333444566777777777777777654 3332211 111222233466777777776653 2345566666677777
Q ss_pred CCCHHHHHHHHHHHHHcC----------------C--C--------------CCHHHH---------------------H
Q 005905 105 SKDSEGAFQVLRLVQEAG----------------L--K--------------ADCKLY---------------------T 131 (670)
Q Consensus 105 ~g~~~~A~~~~~~m~~~g----------------~--~--------------pd~~~~---------------------~ 131 (670)
.|++++|+..++++.... . . |+.... .
T Consensus 194 ~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~ 273 (1157)
T PRK11447 194 SGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRAR 273 (1157)
T ss_pred cCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHH
Confidence 777777777777654321 0 0 110000 0
Q ss_pred HHHHHHHhcCCHHHHHh-------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHH----------
Q 005905 132 TLITTCAKSGKVDAMFE-------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI---------- 194 (670)
Q Consensus 132 ~li~~~~~~g~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~---------- 194 (670)
.+..++...|+++++.. .-+.+...+..+...|.+.|++++|+..|++..+... -.++...+
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p-~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDP-HSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CccchhHHHHHHHhhhHH
Confidence 11233455566665433 1233667777777778888888888888877765421 11111111
Q ss_pred --HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-
Q 005905 195 --GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA- 271 (670)
Q Consensus 195 --~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~- 271 (670)
......+.+.|++++|...|+++.+.. +.+...+..+...|...|++++|++.|++..+.... +...+..+...|
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~ 430 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 112335567777888888887777764 455666777777777788888888888777765432 333343333333
Q ss_pred -----------------------------------------HhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC
Q 005905 272 -----------------------------------------GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310 (670)
Q Consensus 272 -----------------------------------------~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g 310 (670)
...|++++|.+.+++..+.. +-+..++..+...|.+.|
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 33444455555555444432 223334444444455555
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHHhcCC
Q 005905 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI---------TYSILLVACERKDD 381 (670)
Q Consensus 311 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---------t~~~ll~a~~~~g~ 381 (670)
++++|...|+++.+... .+...+..+...+...++.++|+..++.+......++.. .+......+...|+
T Consensus 510 ~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 55555555554443321 122223223333334444444444444432211111111 11122334555566
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--hHHHHHHhHHHhhhhcCCCccc---------hhhhHHHHHHHHHHH
Q 005905 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQI---------ENKWTSLALMVYREA 450 (670)
Q Consensus 382 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r--~~~~a~~l~~a~~~~~~~~~~~---------~~~~~~~A~~~~~~m 450 (670)
.++|..+++ . .+++...+..+-+.+.+ .+++|....+......+..+.. ..+-..+|+..|++.
T Consensus 589 ~~eA~~~l~---~--~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 589 EAEAEALLR---Q--QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HHHHHHHHH---h--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 666666554 1 12333334444444433 4555555544433332221110 111123577888876
Q ss_pred HHcCCCCcHHHHHHHHhhc--cCCCchhHHHHHHHhcCCCcc-cc------ccccchhhhhcccccchHHHHHHHHHH-h
Q 005905 451 IVAGTIPTVEVVSKVLGCL--QLPYNADIRERLVENLGVSAD-AL------KRSNLCSLIDGFGEYDPRAFSLLEEAA-S 520 (670)
Q Consensus 451 ~~~~~~P~~~~~~~ll~~~--~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~l~~~~g~~~~~A~~~~~~a~-~ 520 (670)
+. ..|+.......++.+ ..+...+..+.+.+.+...++ +. .+.....++...|++. +|...++.++ .
T Consensus 664 l~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~-~A~~~y~~Al~~ 740 (1157)
T PRK11447 664 PA--TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQ-QALETYKDAMVA 740 (1157)
T ss_pred hc--cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhh
Confidence 64 455544433333322 233333333333333333331 11 1111223556667654 5888888875 3
Q ss_pred CCCCCccc
Q 005905 521 FGIVPCVS 528 (670)
Q Consensus 521 ~g~~p~~~ 528 (670)
.|+.|..+
T Consensus 741 ~~~~~~~p 748 (1157)
T PRK11447 741 SGITPTRP 748 (1157)
T ss_pred cCCCCCCC
Confidence 45566544
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.8e-14 Score=165.94 Aligned_cols=352 Identities=12% Similarity=0.067 Sum_probs=200.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC--CCC---HHHHH------------
Q 005905 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPT---LSTFN------------ 96 (670)
Q Consensus 34 ~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~---~~~y~------------ 96 (670)
.+...|++++|+..|++..+.. |.+...+..+..++.+.|++++|+..|++.. .|+ ...|.
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 4457899999999999999877 7777777778888999999999999998653 222 12222
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHh------cC-CCCHHHHHHHHHHHHhcCC
Q 005905 97 MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE------NV-KPDRVVFNALITACGQSGA 169 (670)
Q Consensus 97 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~------~~-~~~~~~~~~li~~~~~~g~ 169 (670)
.....+.+.|++++|+..|+++++.. +.+...+..+..++...|+++++.+ .. +.+...+..+...|. .++
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~ 433 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQS 433 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcC
Confidence 12346778999999999999999874 3466778888999999999887654 12 334555555555553 345
Q ss_pred HHHHHHHHHHHhhCCCC-C-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 005905 170 VDRAFDVLAEMNAEVHP-V-----DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 243 (670)
Q Consensus 170 ~~~A~~l~~~m~~~~~~-~-----~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 243 (670)
.++|+.+++.+...... + ......+..+...+...|++++|.+.|++..+.. +.+..++..+...|.+.|+++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 56666655544321000 0 0001234445555566666666666666665544 334555555666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--------------------------------
Q 005905 244 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG-------------------------------- 291 (670)
Q Consensus 244 ~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~-------------------------------- 291 (670)
+|...|+++.+.... +...+..+...+...++.++|...++.+....
T Consensus 513 ~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 513 QADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 666666666544322 22222222233344455555555444432211
Q ss_pred -------CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC
Q 005905 292 -------ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364 (670)
Q Consensus 292 -------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 364 (670)
.+.+...+..+...|.+.|++++|...|++..+.. +.+...+..++..|...|++++|++.|+...+. .|
T Consensus 592 A~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p 668 (1157)
T PRK11447 592 AEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--AN 668 (1157)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CC
Confidence 12233344445555555555555555555555443 224445555555555555555555555544432 22
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 365 N-TITYSILLVACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 365 ~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 394 (670)
+ ..++..+..++...|++++|.++++.+..
T Consensus 669 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 669 DSLNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 2 23333344444455555555555555544
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.2e-13 Score=149.91 Aligned_cols=316 Identities=11% Similarity=0.032 Sum_probs=247.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHh------cC-CCCHHHHHHHHHHHHhc
Q 005905 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE------NV-KPDRVVFNALITACGQS 167 (670)
Q Consensus 95 y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~------~~-~~~~~~~~~li~~~~~~ 167 (670)
...++..+.+.|+++.|..+++..+..... +...+..++.++...|+++.+.+ .. +.+...|..+...+.+.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 345677888999999999999999887433 34455556667777999987655 23 34567888899999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005905 168 GAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246 (670)
Q Consensus 168 g~~~~A~~l~~~m~~~~~~~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 246 (670)
|++++|+..|++.... .|+ ...+..+...+...|++++|...++.+.... +.+...+..+. .+.+.|++++|.
T Consensus 124 g~~~~Ai~~l~~Al~l----~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~~-~l~~~g~~~eA~ 197 (656)
T PRK15174 124 KQYATVADLAEQAWLA----FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATCL-SFLNKSRLPEDH 197 (656)
T ss_pred CCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHHH-HHHHcCCHHHHH
Confidence 9999999999999874 444 5677788899999999999999999887765 33444554443 478899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHH----HHHHHHHH
Q 005905 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK----ALELYEHM 322 (670)
Q Consensus 247 ~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m 322 (670)
..++.+.+....++...+..+..++...|++++|...++.+.+.. +.+...+..+...|...|++++ |...|++.
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 999999887554555566666788899999999999999999875 5567888899999999999986 89999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 005905 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 401 (670)
Q Consensus 323 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~ 401 (670)
.+..+ .+...+..+...+...|++++|+..+++.... .|+ ...+..+..++...|++++|...|+.+.+.. |+.
T Consensus 277 l~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~ 351 (656)
T PRK15174 277 LQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVT 351 (656)
T ss_pred HhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccc
Confidence 87753 36788999999999999999999999999875 454 5566677888999999999999999988753 544
Q ss_pred HHHHH-HHHHHHh--hHHHHHHhHH
Q 005905 402 VMFKC-IIGMCSR--RYEKARTLNE 423 (670)
Q Consensus 402 ~~~~~-li~~~~r--~~~~a~~l~~ 423 (670)
..+.. +..++.. ++++|....+
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~ 376 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFE 376 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 33222 2223322 4555555444
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.6e-13 Score=149.90 Aligned_cols=348 Identities=11% Similarity=0.016 Sum_probs=247.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCCHH
Q 005905 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSE 109 (670)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~g~~~ 109 (670)
.++.+.|++++|++.++..++.+ |.....+.....++...|++++|+..|.... ..+......++.-+.. .
T Consensus 168 ~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~ 241 (615)
T TIGR00990 168 ACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----K 241 (615)
T ss_pred HHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----H
Confidence 34558899999999999999887 7776666668888999999999998775432 1111111111111111 0
Q ss_pred HHHHHHHHHHHcCC--CCCHH---------------------------HHHHHHHHH------HhcCCHHHHHh------
Q 005905 110 GAFQVLRLVQEAGL--KADCK---------------------------LYTTLITTC------AKSGKVDAMFE------ 148 (670)
Q Consensus 110 ~A~~~~~~m~~~g~--~pd~~---------------------------~~~~li~~~------~~~g~~~~~~~------ 148 (670)
.+........+... .|... .-..++..+ ...++++++.+
T Consensus 242 ~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al 321 (615)
T TIGR00990 242 FAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKAL 321 (615)
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 11111111111100 00000 000001100 11133443322
Q ss_pred -c--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 005905 149 -N--VKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIK 223 (670)
Q Consensus 149 -~--~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 223 (670)
. ..| +...|+.+...+...|++++|+..|++.... .|+ ...|..+...+...|++++|...|+.+.+.+ +
T Consensus 322 ~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l----~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p 396 (615)
T TIGR00990 322 DLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL----DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-S 396 (615)
T ss_pred hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 1 123 4567888889999999999999999999874 455 5578888889999999999999999998875 5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHH
Q 005905 224 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303 (670)
Q Consensus 224 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li 303 (670)
.+..+|..+...|...|++++|...|++.++.... +...+..+..++.+.|++++|+..++...+.. +.+..+++.+.
T Consensus 397 ~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg 474 (615)
T TIGR00990 397 EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYG 474 (615)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 67889999999999999999999999999987643 56778888889999999999999999998764 55678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 005905 304 GACSNAKNWQKALELYEHMKSIKLKPTV------STMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVAC 376 (670)
Q Consensus 304 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~ 376 (670)
..+...|++++|.+.|++..+.....+. ..++.....+...|++++|.+++++.... .|+ ...+..+...+
T Consensus 475 ~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~ 552 (615)
T TIGR00990 475 ELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLL 552 (615)
T ss_pred HHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH
Confidence 9999999999999999998876422111 12222333444579999999999998774 344 45688889999
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 005905 377 ERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 377 ~~~g~~~~a~~~~~~m~~~ 395 (670)
...|++++|..+|++..+.
T Consensus 553 ~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 553 LQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHccCHHHHHHHHHHHHHH
Confidence 9999999999999988764
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.7e-12 Score=145.40 Aligned_cols=389 Identities=12% Similarity=0.066 Sum_probs=272.1
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhC---CCCCHHHHHHHHHHHHc
Q 005905 29 LHSYNRLI-RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCAS 104 (670)
Q Consensus 29 ~~~~~~l~-~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~y~~li~~~~~ 104 (670)
+.=|..+. ..|+.++|++++.+..... |.....+..+..++...|++++|..+|+.. .+.+...+..+...+..
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 33344443 7999999999999998744 555656666888889999999999999874 34567778888899999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHh-------cCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005905 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-------NVKPDRVVFNALITACGQSGAVDRAFDVL 177 (670)
Q Consensus 105 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 177 (670)
.|++++|+..++++.+.. +.+.. +..+..++...|+.+++.. .-+.+...+..+...+...|..++|+..+
T Consensus 96 ~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l 173 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAI 173 (765)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 999999999999998873 34556 8888889999999887654 22345666777888888999999999998
Q ss_pred HHHhhCCCCCCCCHH------HHHHHHHHHH-----HcCCH---HHHHHHHHHHHHc-CCCCCH-HHH----HHHHHHHH
Q 005905 178 AEMNAEVHPVDPDHI------TIGALMKACA-----NAGQV---DRAREVYKMIHKY-NIKGTP-EVY----TIAINCCS 237 (670)
Q Consensus 178 ~~m~~~~~~~~pd~~------t~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-~~~~~~-~~~----~~li~~~~ 237 (670)
+.... .|+.. ....++.... ..+++ ++|++.++.+.+. ...|+. ..+ ...+.++.
T Consensus 174 ~~~~~-----~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll 248 (765)
T PRK10049 174 DDANL-----TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALL 248 (765)
T ss_pred HhCCC-----CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH
Confidence 87653 33320 1111222221 22334 7788888888764 112221 111 11134456
Q ss_pred hcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc---cHHHHHHHHHHHHhcCCHH
Q 005905 238 QTGDWEFACSVYDDMTKKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV---GIISYSSLMGACSNAKNWQ 313 (670)
Q Consensus 238 ~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~ 313 (670)
..|++++|...|+++.+.+.. |+. ....+..+|...|++++|...|+.+.+..... .......+..++...|+++
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 779999999999999887643 332 22235678899999999999999987654211 1345667777889999999
Q ss_pred HHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 005905 314 KALELYEHMKSIKL-----------KPT---VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379 (670)
Q Consensus 314 ~A~~~~~~m~~~~~-----------~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 379 (670)
+|..+++.+.+... .|+ ...+..+...+...|+.++|+++|+++... .+-+...+..+...+...
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~ 406 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQAR 406 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhc
Confidence 99999998876531 123 235567778888999999999999998875 244566777788888899
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh--hHHHHHHhHHHhhhhcC
Q 005905 380 DDVEVGLMLLSQAKEDGVIPNL-VMFKCIIGMCSR--RYEKARTLNEHVLSFNS 430 (670)
Q Consensus 380 g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~r--~~~~a~~l~~a~~~~~~ 430 (670)
|++++|++.+++..+.. |+. ..+......+.+ ++++|..+.+......+
T Consensus 407 g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 407 GWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred CCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 99999999999888743 553 333333323222 67777777665544333
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.2e-12 Score=122.68 Aligned_cols=308 Identities=16% Similarity=0.204 Sum_probs=190.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh-----------------------------hhhhHHHHH
Q 005905 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK-----------------------------SQKAIKEAF 81 (670)
Q Consensus 31 ~~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~-----------------------------~~~~~~~A~ 81 (670)
..-.++..|.+.++.-+|+.|...|+.- ..-+...++++.. +.|+ -|-
T Consensus 121 nL~kmIS~~EvKDs~ilY~~m~~e~~~v-S~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~--vAd 197 (625)
T KOG4422|consen 121 NLLKMISSREVKDSCILYERMRSENVDV-SEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA--VAD 197 (625)
T ss_pred HHHHHHhhcccchhHHHHHHHHhcCCCC-CHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc--HHH
Confidence 3445668999999999999999998743 3333222333221 1111 122
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH---HH-HhcCCCCHHHH
Q 005905 82 RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AM-FENVKPDRVVF 157 (670)
Q Consensus 82 ~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~---~~-~~~~~~~~~~~ 157 (670)
-+|+. .+.+..+|..||.++|+--..+.|.++|.+-.....+.+..+||.+|.+-+-...-+ ++ -..+.||..||
T Consensus 198 L~~E~-~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~Pnl~Tf 276 (625)
T KOG4422|consen 198 LLFET-LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQKMTPNLFTF 276 (625)
T ss_pred HHHhh-cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCCchHhH
Confidence 22333 345567889999999999999999999998888777888888888887654332211 22 22567777777
Q ss_pred HHHHHHHHhcCCHHH----HHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHH----cCCCC----
Q 005905 158 NALITACGQSGAVDR----AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR-AREVYKMIHK----YNIKG---- 224 (670)
Q Consensus 158 ~~li~~~~~~g~~~~----A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~-A~~~~~~m~~----~~~~~---- 224 (670)
|+++.+.++.|+++. |++++.+|++- |+.|...+|..+|..+++.++..+ |..+..++.. ..++|
T Consensus 277 NalL~c~akfg~F~~ar~aalqil~EmKei--GVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~ 354 (625)
T KOG4422|consen 277 NALLSCAAKFGKFEDARKAALQILGEMKEI--GVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPT 354 (625)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHh--CCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCc
Confidence 777777777776553 44566666664 677777777777777777666533 3333333322 11221
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHH
Q 005905 225 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKG----VIPD---EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 297 (670)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~---~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~ 297 (670)
+..-|...++.|.+..+.+.|.++..-+.... +.|+ .+-|..+....|.....+.-...|+.|+-.-.-|+..
T Consensus 355 d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~ 434 (625)
T KOG4422|consen 355 DNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQ 434 (625)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCch
Confidence 33445566677777777777766655443221 1222 1234556666666777777777777776666666677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 005905 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 344 (670)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 344 (670)
+...++++..-.|.++-..+++.+++..|...+...-..++..+++.
T Consensus 435 ~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~ 481 (625)
T KOG4422|consen 435 TMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARD 481 (625)
T ss_pred hHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcC
Confidence 77777777777777777777777777666444444444444444433
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-11 Score=140.91 Aligned_cols=463 Identities=10% Similarity=-0.025 Sum_probs=283.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC--CCC-HHHHHHHHHHHHcCCCHHHHHH
Q 005905 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPT-LSTFNMLMSVCASSKDSEGAFQ 113 (670)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~~~y~~li~~~~~~g~~~~A~~ 113 (670)
..|++++|+..|++..+.. |.+...+..+..++...|+.++|+..+++.. .|+ ...+..+ ..+ +++++|..
T Consensus 56 ~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~L-a~i---~~~~kA~~ 129 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSL-AAI---PVEVKSVT 129 (987)
T ss_pred hCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH-HHh---ccChhHHH
Confidence 4699999999999999988 8888888889999999999999999998764 343 4444443 333 89999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHH--------HHhcCCHHHHHh--cCCC--CHHHHH-HHHHHHHhcCCHHHHHHHHHHH
Q 005905 114 VLRLVQEAGLKADCKLYTTLITT--------CAKSGKVDAMFE--NVKP--DRVVFN-ALITACGQSGAVDRAFDVLAEM 180 (670)
Q Consensus 114 ~~~~m~~~g~~pd~~~~~~li~~--------~~~~g~~~~~~~--~~~~--~~~~~~-~li~~~~~~g~~~~A~~l~~~m 180 (670)
+|+++.... +-+..++..+... |.+.+...++.+ ...| +..+.. .+...|.+.|++++|++++.++
T Consensus 130 ~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L 208 (987)
T PRK09782 130 TVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEA 208 (987)
T ss_pred HHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 999999874 3345566666555 666666555544 1223 344444 4489999999999999999999
Q ss_pred hhCCCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---
Q 005905 181 NAEVHPVDPDHITIGALMKACAN-AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG--- 256 (670)
Q Consensus 181 ~~~~~~~~pd~~t~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--- 256 (670)
.+.+ ..+..-...+..+|.. .++ +.+..+++. .++.++.++..+.+.|.+.|+.++|..+++++....
T Consensus 209 ~k~~---pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 209 RQQN---TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HhcC---CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 8762 1222223334444444 244 444444332 112344455555555555555555555544432110
Q ss_pred --------------------------------------------------------------------------------
Q 005905 257 -------------------------------------------------------------------------------- 256 (670)
Q Consensus 257 -------------------------------------------------------------------------------- 256 (670)
T Consensus 281 ~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 360 (987)
T PRK09782 281 AQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAE 360 (987)
T ss_pred CccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhH
Confidence
Q ss_pred ------------------------------------------------CCCCHHHHHHHHHHHHhcCC---hHHHHHH--
Q 005905 257 ------------------------------------------------VIPDEVFLSALIDFAGHAGK---VEAAFEI-- 283 (670)
Q Consensus 257 ------------------------------------------------~~p~~~t~~~li~~~~~~g~---~~~A~~i-- 283 (670)
-.++......++..|.+.+. ...+..+
T Consensus 361 ~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 440 (987)
T PRK09782 361 ALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSK 440 (987)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcc
Confidence 01111122233444443333 1111111
Q ss_pred --------------------HHHHHHC-CC-Cc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005905 284 --------------------LQEAKNQ-GI-SV--GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 339 (670)
Q Consensus 284 --------------------~~~m~~~-~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 339 (670)
....... +. ++ +...|..+..++.. ++.++|...|.+.... .|+......+..
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~ 517 (987)
T PRK09782 441 PLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAY 517 (987)
T ss_pred ccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHH
Confidence 0111000 11 33 67788888888877 7888899988877655 466544434455
Q ss_pred HHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH--hhHH
Q 005905 340 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL-VMFKCIIGMCS--RRYE 416 (670)
Q Consensus 340 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~--r~~~ 416 (670)
.+...|++++|...|+++... .|+...+..+..++.+.|+.++|..+++...+.. |+. ..+..+...+. .+++
T Consensus 518 al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~ 593 (987)
T PRK09782 518 QAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPE 593 (987)
T ss_pred HHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHH
Confidence 556899999999999987653 5555666677778889999999999999888764 433 33333322321 2466
Q ss_pred HHHHhHHHhhhhcCCCccc---------hhhhHHHHHHHHHHHHHcCCCCcHHHHHHHHhhc--cCCCchhHHHHHHHhc
Q 005905 417 KARTLNEHVLSFNSGRPQI---------ENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL--QLPYNADIRERLVENL 485 (670)
Q Consensus 417 ~a~~l~~a~~~~~~~~~~~---------~~~~~~~A~~~~~~m~~~~~~P~~~~~~~ll~~~--~~~~~~~~~~~~~~~~ 485 (670)
+|....+......+. +.. ..+-.++|+..|++.+. ..|+...+...++.. ..+...+....+.+.+
T Consensus 594 eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 594 LALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666655443333331 100 11122468888888886 578877766666533 3444455555556666
Q ss_pred CCCcc-ccccccchhhhhcccccchHHHHHHHHHHhCCCCCcc
Q 005905 486 GVSAD-ALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCV 527 (670)
Q Consensus 486 ~~~~~-~~~~~~~~~l~~~~g~~~~~A~~~~~~a~~~g~~p~~ 527 (670)
.+.|+ +..+.++..++...|+.+ .|...++++++. .|+.
T Consensus 671 ~l~P~~~~a~~nLA~al~~lGd~~-eA~~~l~~Al~l--~P~~ 710 (987)
T PRK09782 671 KGLPDDPALIRQLAYVNQRLDDMA-ATQHYARLVIDD--IDNQ 710 (987)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHH-HHHHHHHHHHhc--CCCC
Confidence 66663 444455556777778765 488889988866 5644
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.7e-11 Score=132.79 Aligned_cols=349 Identities=13% Similarity=0.080 Sum_probs=225.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchH-HHHHHHHHHHhhhhhHHHHHHHhhhCCCCCHH-HHHHH--HHHHHcCCCHHHHH
Q 005905 37 RQGRISECIDLLEDMERKGLLDMDK-VYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS-TFNML--MSVCASSKDSEGAF 112 (670)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~g~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~y~~l--i~~~~~~g~~~~A~ 112 (670)
+.|+++.|++.|++..+.. |.+. .++ -++.++...|+.++|+..+++...|+.. .+..+ ...+...|++++|+
T Consensus 46 r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred hCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 8999999999999999887 6553 333 4666777789999999999988665332 33333 56788889999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHh------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 005905 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186 (670)
Q Consensus 113 ~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 186 (670)
++|+++++.. +-|...+..++..|...++.+++++ ...|+...+-.++..+...++..+|++.++++.+.
T Consensus 123 ely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~--- 198 (822)
T PRK14574 123 ALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL--- 198 (822)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh---
Confidence 9999999974 3356777788899999999998776 24566666644444454466676799999999985
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHH------------------------------------------------HH
Q 005905 187 VDPD-HITIGALMKACANAGQVDRAREVYK------------------------------------------------MI 217 (670)
Q Consensus 187 ~~pd-~~t~~~li~~~~~~g~~~~A~~~~~------------------------------------------------~m 217 (670)
.|+ ...+..+..+..+.|-...|.++.+ .+
T Consensus 199 -~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l 277 (822)
T PRK14574 199 -APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL 277 (822)
T ss_pred -CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 454 4445555566655555444444433 22
Q ss_pred HHc--CCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 005905 218 HKY--NIKGTPEVY----TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291 (670)
Q Consensus 218 ~~~--~~~~~~~~~----~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~ 291 (670)
... ..++....| -=.+-++...|++.++++.|+.|...+.+....+-..+.++|...+++++|..+++.+....
T Consensus 278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 221 001111111 11234555666777777777777766655444566667777777777777777777765432
Q ss_pred -----CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------------CCCH-HHHHHHHHHHHhCCChhHHHH
Q 005905 292 -----ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL-------------KPTV-STMNALITALCDGDQLPKTME 352 (670)
Q Consensus 292 -----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-------------~p~~-~~~~~li~~~~~~g~~~~A~~ 352 (670)
..++......|.-+|...+++++|..+++.+.+..+ .||- ..+..++..+...|+..+|++
T Consensus 358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~ 437 (822)
T PRK14574 358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK 437 (822)
T ss_pred ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 122333445666777777777777777777765211 1111 122334555666777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 353 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 353 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 394 (670)
.++++... -+-|......+...+...|.+.+|.+.++....
T Consensus 438 ~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~ 478 (822)
T PRK14574 438 KLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVES 478 (822)
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 77777654 234556666666667777777777777755444
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.2e-11 Score=119.37 Aligned_cols=303 Identities=16% Similarity=0.218 Sum_probs=238.0
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----------------------------C
Q 005905 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS-----------------------------G 141 (670)
Q Consensus 91 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~-----------------------------g 141 (670)
.+++=|.|++.. ..|.+..+.-+|+.|...|++.+..+--.|+...+-. |
T Consensus 115 ~V~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 115 QVETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred hhcchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence 345667777654 5688999999999999999888887766666543322 1
Q ss_pred CHHH-HHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005905 142 KVDA-MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 220 (670)
Q Consensus 142 ~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 220 (670)
.+.+ .|+..+.+..+|.+||.+.++--..++|.++|++-... ..+.+..+||.+|.+-.-. ...++..+|...
T Consensus 194 ~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~--k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisq 267 (625)
T KOG4422|consen 194 AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAA--KGKVYREAFNGLIGASSYS----VGKKLVAEMISQ 267 (625)
T ss_pred cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh--hheeeHHhhhhhhhHHHhh----ccHHHHHHHHHh
Confidence 2211 34456678899999999999999999999999998775 4577889999999765433 237889999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHH----HCC
Q 005905 221 NIKGTPEVYTIAINCCSQTGDWEF----ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA-AFEILQEAK----NQG 291 (670)
Q Consensus 221 ~~~~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~-A~~i~~~m~----~~~ 291 (670)
.+.||..|+|+++++.++.|+++. |++++.+|.+.|+.|...+|..+|..+++.++..+ +..++.++. .+.
T Consensus 268 km~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~ 347 (625)
T KOG4422|consen 268 KMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKT 347 (625)
T ss_pred hcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCc
Confidence 999999999999999999998765 56788999999999999999999999999888744 333333332 222
Q ss_pred C----CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 005905 292 I----SVGIISYSSLMGACSNAKNWQKALELYEHMKSIK----LKPT---VSTMNALITALCDGDQLPKTMEVLSDMKSL 360 (670)
Q Consensus 292 ~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 360 (670)
+ +.|...|.+.|..|.+..+.+.|.++..-+.... +.|+ ..-|..+....|+....+.-+..|+.|.-.
T Consensus 348 fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~ 427 (625)
T KOG4422|consen 348 FKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPS 427 (625)
T ss_pred ccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3 2356678888999999999999999877665321 1222 234566778888888999999999999988
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 005905 361 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400 (670)
Q Consensus 361 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~ 400 (670)
-+-|+..+...+++|..-.+.++-.-+++..++..|..-.
T Consensus 428 ~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r 467 (625)
T KOG4422|consen 428 AYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFR 467 (625)
T ss_pred eecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhh
Confidence 7889999999999999999999999999999998884433
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.3e-11 Score=135.95 Aligned_cols=386 Identities=11% Similarity=0.044 Sum_probs=270.4
Q ss_pred HHHHHhhhhhHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 005905 67 FFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143 (670)
Q Consensus 67 l~~~~~~~~~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~ 143 (670)
...+....|+.++|++++.... +.+...+..+..++...|++++|..+|++.++.. +.+...+..+..++...|+.
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQY 99 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence 5566777899999999998754 3456679999999999999999999999998863 34567778888999999999
Q ss_pred HHHHh-------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 005905 144 DAMFE-------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYK 215 (670)
Q Consensus 144 ~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd-~~t~~~li~~~~~~g~~~~A~~~~~ 215 (670)
+++.+ ..+.+.. |..+..++...|+.++|+..++++.+. .|+ ...+..+..++...+..+.|.+.++
T Consensus 100 ~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~----~P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 100 DEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPR----APQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred HHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 88654 2234556 888999999999999999999999875 454 4455667778888999999999887
Q ss_pred HHHHcCCCCCH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHHHHC-CCCCCHH-HHH----HHHHHHHhcC
Q 005905 216 MIHKYNIKGTP------EVYTIAINCCS-----QTGDW---EFACSVYDDMTKK-GVIPDEV-FLS----ALIDFAGHAG 275 (670)
Q Consensus 216 ~m~~~~~~~~~------~~~~~li~~~~-----~~g~~---~~A~~l~~~m~~~-g~~p~~~-t~~----~li~~~~~~g 275 (670)
.... .|+. .....++..+. ..+++ ++|++.++.+.+. ...|+.. .+. ..+.++...|
T Consensus 175 ~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g 251 (765)
T PRK10049 175 DANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD 251 (765)
T ss_pred hCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh
Confidence 6654 2211 11222233222 22334 7899999999864 2233321 111 1133456779
Q ss_pred ChHHHHHHHHHHHHCCCC-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhCCChhHHH
Q 005905 276 KVEAAFEILQEAKNQGIS-VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP---TVSTMNALITALCDGDQLPKTM 351 (670)
Q Consensus 276 ~~~~A~~i~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~ 351 (670)
++++|...|+.+.+.+.+ |+. ....+..+|...|++++|...|+++.+..... ....+..+..++...|++++|.
T Consensus 252 ~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~ 330 (765)
T PRK10049 252 RYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGAL 330 (765)
T ss_pred hHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHH
Confidence 999999999999987632 332 22235778999999999999999987653211 1355677778899999999999
Q ss_pred HHHHHHHhCC-----------CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--hH
Q 005905 352 EVLSDMKSLG-----------LCPNT---ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RY 415 (670)
Q Consensus 352 ~l~~~m~~~g-----------~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r--~~ 415 (670)
++++++.... -.|+. ..+..+...+...|+.++|..+++++.... +-+...+..+..++.. .+
T Consensus 331 ~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~ 409 (765)
T PRK10049 331 TVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWP 409 (765)
T ss_pred HHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCH
Confidence 9999998742 12342 345566778889999999999999988753 2334555555565543 67
Q ss_pred HHHHHhHHHhhhhcCCCccc--h-------hhhHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 005905 416 EKARTLNEHVLSFNSGRPQI--E-------NKWTSLALMVYREAIVAGTIPTVEVVSKV 465 (670)
Q Consensus 416 ~~a~~l~~a~~~~~~~~~~~--~-------~~~~~~A~~~~~~m~~~~~~P~~~~~~~l 465 (670)
++|....+....+.+..+.. . .+-..+|..+++++++ ..|+......+
T Consensus 410 ~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~ 466 (765)
T PRK10049 410 RAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRL 466 (765)
T ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence 77777766555544432111 1 1112468889999987 57777655444
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.6e-10 Score=129.64 Aligned_cols=348 Identities=16% Similarity=0.118 Sum_probs=250.3
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH--hhhhhHHHHHHHhhhCC---CCCHHHHHHHHHH
Q 005905 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC--KSQKAIKEAFRFFKLVP---NPTLSTFNMLMSV 101 (670)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~---~~~~~~y~~li~~ 101 (670)
+-+.+-..+++.++++-+.++.. +.|-+.. . ..+.. ...+...+|...++.+- +.+.....-+--.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-~--~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~ 385 (987)
T PRK09782 315 VVGATLPVLLKEGQYDAAQKLLA------TLPANEM-L--EERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQ 385 (987)
T ss_pred HHHHHHHHHHhccHHHHHHHHhc------CCCcchH-H--HHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34445666778888886665522 2233333 2 22222 22244455555444442 2244444455555
Q ss_pred HHcCCCHHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHHhcCCHH---HH----------------------------Hh
Q 005905 102 CASSKDSEGAFQVLRLVQEA-G-LKADCKLYTTLITTCAKSGKVD---AM----------------------------FE 148 (670)
Q Consensus 102 ~~~~g~~~~A~~~~~~m~~~-g-~~pd~~~~~~li~~~~~~g~~~---~~----------------------------~~ 148 (670)
..+.|+.++|.++|+..... + ..++.....-|+..|.+.+.++ .+ +.
T Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (987)
T PRK09782 386 LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIV 465 (987)
T ss_pred HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHH
Confidence 67788899999999887762 1 2234555667788887776521 11 00
Q ss_pred ----cCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 005905 149 ----NVKP--DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 222 (670)
Q Consensus 149 ----~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 222 (670)
..++ +...|..+..++.. ++.++|+..|.+.... .|+......+..++...|++++|...|+.+...
T Consensus 466 ~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~----~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~-- 538 (987)
T PRK09782 466 RLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR----QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH-- 538 (987)
T ss_pred HhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh----CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--
Confidence 1134 67788888888877 8999999988888764 577555444555667899999999999987654
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHH
Q 005905 223 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302 (670)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~l 302 (670)
+|+...+..+..++.+.|++++|...|++..+.... +...+..+.......|++++|...+++..+.. |+...+..+
T Consensus 539 ~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~L 615 (987)
T PRK09782 539 DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVAR 615 (987)
T ss_pred CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHH
Confidence 444556677788899999999999999999887532 33344444445556799999999999998865 568889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 005905 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDD 381 (670)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~ 381 (670)
..++.+.|++++|...|++..+.. +.+...++.+...+...|+.++|+..|++..+. .| +...+..+..++...|+
T Consensus 616 A~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd 692 (987)
T PRK09782 616 ATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDD 692 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCC
Confidence 999999999999999999998876 336778888999999999999999999999874 45 56677888889999999
Q ss_pred HHHHHHHHHHHHHCC
Q 005905 382 VEVGLMLLSQAKEDG 396 (670)
Q Consensus 382 ~~~a~~~~~~m~~~g 396 (670)
+++|...|++..+..
T Consensus 693 ~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 693 MAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999988753
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.3e-10 Score=123.72 Aligned_cols=360 Identities=11% Similarity=0.053 Sum_probs=255.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC--CCCHHHHHHHHHHHHcCCCHHHH
Q 005905 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMSVCASSKDSEGA 111 (670)
Q Consensus 34 ~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~y~~li~~~~~~g~~~~A 111 (670)
.+...|++++|+++|+++.+.. |.+..+...++..+...++.++|++.++.+. .|+...+-.++..+...++..+|
T Consensus 111 ly~~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~A 188 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDA 188 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHH
Confidence 4446688888888888888877 6665555556677777788888888887765 35545554444444445666568
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcC--CCCHH-----HH------HHHHHHH---H--hcC---CH
Q 005905 112 FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENV--KPDRV-----VF------NALITAC---G--QSG---AV 170 (670)
Q Consensus 112 ~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~--~~~~~-----~~------~~li~~~---~--~~g---~~ 170 (670)
+..++++.+.. +-+...+..++.+..+.|-...+.+.. .|+.. -+ ..+++.- . ... -.
T Consensus 189 L~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~ 267 (822)
T PRK14574 189 LQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIA 267 (822)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 88888888863 335666677777777777766554421 12111 11 1111110 0 111 24
Q ss_pred HHHHHHHHHHhhCCCCCCCCH-HHH----HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005905 171 DRAFDVLAEMNAEVHPVDPDH-ITI----GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245 (670)
Q Consensus 171 ~~A~~l~~~m~~~~~~~~pd~-~t~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 245 (670)
+.|+.-++.+.... +-.|.. ..| .-.+-++...|++.++++.|+.+...+.+....+-.++.++|...+.+++|
T Consensus 268 d~ala~~~~l~~~~-~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 268 DKALADYQNLLTRW-GKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHhhc-cCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 56777777766542 222332 222 234567889999999999999999888765667889999999999999999
Q ss_pred HHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-------------CccH-HHHHHHHHHH
Q 005905 246 CSVYDDMTKKG-----VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI-------------SVGI-ISYSSLMGAC 306 (670)
Q Consensus 246 ~~l~~~m~~~g-----~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~-------------~~~~-~~~~~li~~~ 306 (670)
..+|+++.... ..++......|.-+|..++++++|..+++.+.+... .||- ..+..++..+
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 99999997643 123444457888899999999999999999987321 1222 3445567788
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 005905 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVG 385 (670)
Q Consensus 307 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 385 (670)
...|++.+|++.++++.... +-|......+...+...|.+.+|.+.++..... .|+ ..+......++...+++++|
T Consensus 427 ~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A 503 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQM 503 (822)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHH
Confidence 99999999999999998776 458999999999999999999999999776654 554 56667778888899999999
Q ss_pred HHHHHHHHHCCCCCCHH
Q 005905 386 LMLLSQAKEDGVIPNLV 402 (670)
Q Consensus 386 ~~~~~~m~~~g~~p~~~ 402 (670)
..+.+.+.... |+..
T Consensus 504 ~~~~~~l~~~~--Pe~~ 518 (822)
T PRK14574 504 ELLTDDVISRS--PEDI 518 (822)
T ss_pred HHHHHHHHhhC--CCch
Confidence 99998887743 5544
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.6e-10 Score=118.94 Aligned_cols=200 Identities=12% Similarity=0.093 Sum_probs=127.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh----------
Q 005905 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG-VIPDEVFLSALIDFAGH---------- 273 (670)
Q Consensus 205 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~li~~~~~---------- 273 (670)
+...+|...++.....+ ..++.+++.+-..|.+...+..|.+-|....+.- ..+|.....+|-..|..
T Consensus 544 ~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~e 622 (1018)
T KOG2002|consen 544 NNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPE 622 (1018)
T ss_pred cCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChH
Confidence 44555566665555543 4455666666666666666666666555554332 22455555555554432
Q ss_pred --cCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHH
Q 005905 274 --AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 351 (670)
Q Consensus 274 --~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 351 (670)
.+..++|+++|.++.+.. +.|...-|-+.-.++.+|++.+|..||.++++... .+..+|-.+.++|..+|++..|+
T Consensus 623 k~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AI 700 (1018)
T KOG2002|consen 623 KEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAI 700 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHH
Confidence 234567777777777765 56677777777778888888888888888776542 24456777778888888888888
Q ss_pred HHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005905 352 EVLSDMKS-LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407 (670)
Q Consensus 352 ~l~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 407 (670)
++|+...+ ..-.-+......|..++...|.+.+|.+.+-........-....||..
T Consensus 701 qmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a 757 (1018)
T KOG2002|consen 701 QMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLA 757 (1018)
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHH
Confidence 88877554 333445666777777788888888888777666654433333444433
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.7e-11 Score=116.11 Aligned_cols=203 Identities=15% Similarity=0.218 Sum_probs=151.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 005905 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 283 (670)
Q Consensus 204 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i 283 (670)
.|++++|.+.|++....+-......||+=+ .+-..|++++|++.|-++...=. -+..++..+...|....+..+|.++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~il~-nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAILL-NNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 477888888888887655333333344333 35567888888888877643211 2556777777888888888888888
Q ss_pred HHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCC
Q 005905 284 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363 (670)
Q Consensus 284 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 363 (670)
+.+.... ++.|+.+...|.+.|-+.|+-..|.+.+-+--.. ++-|..+..-|..-|....-+++|+..|++..- ++
T Consensus 581 ~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iq 656 (840)
T KOG2003|consen 581 LMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQ 656 (840)
T ss_pred HHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cC
Confidence 8776544 5778889999999999999999998876553322 245777878888888888899999999998654 68
Q ss_pred CCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005905 364 PNTITYSILLVAC-ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413 (670)
Q Consensus 364 p~~~t~~~ll~a~-~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r 413 (670)
|+..-|..++..| .+.|++..|+.+++..... ++-|......|+..++.
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~d 706 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGD 706 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcc
Confidence 9999999888766 4679999999999876543 56777888888888765
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.3e-11 Score=123.55 Aligned_cols=278 Identities=12% Similarity=0.083 Sum_probs=205.0
Q ss_pred hHHHHHHHhhhCC--CCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHH----HH
Q 005905 76 AIKEAFRFFKLVP--NPT-LSTFNMLMSVCASSKDSEGAFQVLRLVQEAG--LKADCKLYTTLITTCAKSGKVD----AM 146 (670)
Q Consensus 76 ~~~~A~~~~~~~~--~~~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g--~~pd~~~~~~li~~~~~~g~~~----~~ 146 (670)
+..+|+..|...+ .+| ......+.++|...+++++|.++|+.+.+.. ..-+..+|++.+--+-+.=.+- +.
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 4678899998865 233 3455667799999999999999999998753 1236678888776443322211 12
Q ss_pred HhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 005905 147 FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 225 (670)
Q Consensus 147 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p-d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 225 (670)
.+.-+-...+|.++.++|.-.++.+.|++.|++..+ +.| ..++|+.+.+-+.....+|.|...|+..+..+ +.+
T Consensus 414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ----ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rh 488 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ----LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRH 488 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc----cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chh
Confidence 333455688999999999999999999999999876 466 67888888888888899999999998877654 223
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHH
Q 005905 226 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305 (670)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~ 305 (670)
-.+|.-|.-.|.+.++++.|+-.|++..+.+.. +.+....+...+-+.|+.++|+++++++...... |+..----+..
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~i 566 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASI 566 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHH
Confidence 344555777888999999999999888887755 6777777778888888888888888888776633 33333344555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 005905 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 361 (670)
Q Consensus 306 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 361 (670)
+...+++++|...++++++.- +.+...|-.+...|.+.|+.+.|+.-|..+.+..
T Consensus 567 l~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 667788888888888887763 2245566677778888888888888888777643
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.2e-09 Score=113.93 Aligned_cols=361 Identities=14% Similarity=0.123 Sum_probs=267.3
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhh---CCCCCHHHHHHHHHHHHc
Q 005905 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL---VPNPTLSTFNMLMSVCAS 104 (670)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~y~~li~~~~~ 104 (670)
.+..-|.+-..|++++|..++.++.+.. |.+..-+..+...+..+|+.+.+...+-. +.+.|...|-.+.....+
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence 3344455556799999999999999998 77777777789999999999999987643 345677899999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhc-------CCCCHH-----HHHHHHHHHHhcCCHHH
Q 005905 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN-------VKPDRV-----VFNALITACGQSGAVDR 172 (670)
Q Consensus 105 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~-------~~~~~~-----~~~~li~~~~~~g~~~~ 172 (670)
.|++++|.-.|.+.++.. +++...+---+..|-+.|+...+.++ .+|... .--.++..|...++-+.
T Consensus 220 ~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred cccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999874 44555555567788899998876552 222222 22234566777788899
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---------------------------
Q 005905 173 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT--------------------------- 225 (670)
Q Consensus 173 A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--------------------------- 225 (670)
|.+.++...... +-..+...++.++..+.+...++.|......+..+...+|
T Consensus 299 a~~~le~~~s~~-~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 299 AAKALEGALSKE-KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD 377 (895)
T ss_pred HHHHHHHHHhhc-cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence 999998887632 2344556788888889999999999888877766222222
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHH
Q 005905 226 PEVYTIAINCCSQTGDWEFACSVYDDMTKKG--VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303 (670)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li 303 (670)
..++ -++-++.+....+....+.....+.. +.-+...|.-+.+++...|.+.+|+.++..+......-+..+|--+.
T Consensus 378 l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 378 LRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred chhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 2221 12233444444455555555555555 44455688899999999999999999999999887666788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH--------hCCCCCCHHHHHHHHHH
Q 005905 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK--------SLGLCPNTITYSILLVA 375 (670)
Q Consensus 304 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~--------~~g~~p~~~t~~~ll~a 375 (670)
.+|...|.+++|.+.|+.+.... +-+...--+|-..+-+.|+.++|++.+..|. ..+..|+..........
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~ 535 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDI 535 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHH
Confidence 99999999999999999998764 2245555667778899999999999999964 23455666666666677
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 005905 376 CERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 376 ~~~~g~~~~a~~~~~~m~~ 394 (670)
+...|+.++-..+-..|+.
T Consensus 536 l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 536 LFQVGKREEFINTASTLVD 554 (895)
T ss_pred HHHhhhHHHHHHHHHHHHH
Confidence 8888998876666555543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.9e-09 Score=112.17 Aligned_cols=386 Identities=12% Similarity=0.079 Sum_probs=234.7
Q ss_pred CCchhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CchHHHHHHHHHHHhhhhhHHHHHHHhhhCC--CCC--HHHHHH
Q 005905 23 HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLL-DMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPT--LSTFNM 97 (670)
Q Consensus 23 ~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~--~~~y~~ 97 (670)
.++..-...-|.+.-.|++..+..+.+.+...... +.-..-+..+.+.+-..|+++.|..+|.... .+| +..+--
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG 347 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc
Confidence 33344444445556788888888888888765421 1112224456777778889999988876542 333 334455
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHh-------------------------
Q 005905 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG----KVDAMFE------------------------- 148 (670)
Q Consensus 98 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g----~~~~~~~------------------------- 148 (670)
+...+.+.|+++.+...|+..... .+.+..|...|-..|+..+ ..+.+++
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ 426 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh
Confidence 678888889999998888888876 3445566667766676654 1222222
Q ss_pred --------------------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCCCH------HHHHHHHHHH
Q 005905 149 --------------------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH-PVDPDH------ITIGALMKAC 201 (670)
Q Consensus 149 --------------------~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-~~~pd~------~t~~~li~~~ 201 (670)
+..+-....|.+...+...|++++|...|.+....-. ...+|. .+--.+....
T Consensus 427 ~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~ 506 (1018)
T KOG2002|consen 427 TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLL 506 (1018)
T ss_pred cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHH
Confidence 1123444455555555555566666655555443200 011111 1111223333
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 005905 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 281 (670)
Q Consensus 202 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 281 (670)
-..++.+.|.++|+.+.+.. +.-+..|--+.-.....+...+|...+.+....+- .+...++.+-..+.+...+..|.
T Consensus 507 E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~ 584 (1018)
T KOG2002|consen 507 EELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAK 584 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhhcccc
Confidence 34455556666665555532 22222333333222223455666666666654432 13334444444566666666666
Q ss_pred HHHHHHHHCC-CCccHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChh
Q 005905 282 EILQEAKNQG-ISVGIISYSSLMGACSN------------AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348 (670)
Q Consensus 282 ~i~~~m~~~~-~~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 348 (670)
+-|....+.- ..+|..+.-+|.+.|.. .+..++|.++|.++.... +.|...-|-+...++..|++.
T Consensus 585 k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~ 663 (1018)
T KOG2002|consen 585 KKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFS 663 (1018)
T ss_pred cHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCch
Confidence 6555554432 23566666666665532 346789999999998876 458888899999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh
Q 005905 349 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE-DGVIPNLVMFKCIIGMCSR 413 (670)
Q Consensus 349 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~r 413 (670)
+|..+|.+.++.. .-+..+|..+..+|...|++..|+++|+...+ ..-.-+..+..+|-.++-+
T Consensus 664 ~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~ 728 (1018)
T KOG2002|consen 664 EARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYE 728 (1018)
T ss_pred HHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 9999999999864 23556788889999999999999999977665 4545566667777666543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.6e-12 Score=129.22 Aligned_cols=255 Identities=16% Similarity=0.139 Sum_probs=68.0
Q ss_pred HHHHHhhhhhHHHHHHHhhhC-----CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 005905 67 FFNVCKSQKAIKEAFRFFKLV-----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141 (670)
Q Consensus 67 l~~~~~~~~~~~~A~~~~~~~-----~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g 141 (670)
+...+...|++++|+++++.. ++.|...|..+...+...++++.|+..++++...+.. +...+..++.
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~------ 86 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQ------ 86 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc------
Confidence 355566667777777777422 1224444555555666677777777777777765421 2222333322
Q ss_pred CHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 005905 142 KVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 221 (670)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~ 221 (670)
. ...+++++|.+++...-+. .++...+..++..+...++++++.++++.+....
T Consensus 87 ---------------------l-~~~~~~~~A~~~~~~~~~~----~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~ 140 (280)
T PF13429_consen 87 ---------------------L-LQDGDPEEALKLAEKAYER----DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELP 140 (280)
T ss_dssp ---------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T
T ss_pred ---------------------c-ccccccccccccccccccc----ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 2 3444455555555443322 2333444445555555555555555555544321
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHH
Q 005905 222 -IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 300 (670)
Q Consensus 222 -~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~ 300 (670)
.+.+...|..+...+.+.|+.++|++.|++..+..+. |......++..+...|+.+++.+++....+.. +.|...+.
T Consensus 141 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~ 218 (280)
T PF13429_consen 141 AAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWD 218 (280)
T ss_dssp ---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCH
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHH
Confidence 2334445555555555555555555555555554322 34445555555555555555555555544432 33334445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 005905 301 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357 (670)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 357 (670)
.+..+|...|+.++|...|++..+.. +.|......+..++...|+.++|.++.++.
T Consensus 219 ~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 219 ALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred HHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 55555555555555555555555432 224555555555555555555555555443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.8e-09 Score=113.79 Aligned_cols=283 Identities=9% Similarity=0.023 Sum_probs=188.6
Q ss_pred hhhHHHHHHHhhhCCCC--CHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcC
Q 005905 74 QKAIKEAFRFFKLVPNP--TLS-TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENV 150 (670)
Q Consensus 74 ~~~~~~A~~~~~~~~~~--~~~-~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~ 150 (670)
.|+++.|.+.+...+.. +.. .|-....+..+.|+++.|...|.++.+. .|+......+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l----------------- 157 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEI----------------- 157 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHH-----------------
Confidence 58888888888766432 223 3333345557889999999999998874 4554322211
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----
Q 005905 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP---- 226 (670)
Q Consensus 151 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---- 226 (670)
.....+...|+++.|...++++.+.. +-+...+..+...|.+.|++++|.+++..+.+....++.
T Consensus 158 --------~~a~l~l~~g~~~~Al~~l~~~~~~~---P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~ 226 (398)
T PRK10747 158 --------TRVRIQLARNENHAARHGVDKLLEVA---PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAM 226 (398)
T ss_pred --------HHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 11344566777778888888777642 223456666777788888888888888888776543222
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHH
Q 005905 227 ---EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303 (670)
Q Consensus 227 ---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li 303 (670)
.+|..++.......+.+...++++.+.+.- +.+......+...+...|+.++|.+++....+. .++... .++
T Consensus 227 l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l 301 (398)
T PRK10747 227 LEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLL 301 (398)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHH
Confidence 234444544445555666666666654432 336667777788888888888888888887774 334321 123
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 005905 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383 (670)
Q Consensus 304 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 383 (670)
.+....++.+++.+..+...+.. +-|...+.++...|.+.+++++|.+.|+...+. .|+..+|..+..++.+.|+.+
T Consensus 302 ~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~ 378 (398)
T PRK10747 302 IPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPE 378 (398)
T ss_pred HhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHH
Confidence 33345578888888888777654 235666777788888888888888888888763 688888888888888888888
Q ss_pred HHHHHHHHHHH
Q 005905 384 VGLMLLSQAKE 394 (670)
Q Consensus 384 ~a~~~~~~m~~ 394 (670)
+|.+++++...
T Consensus 379 ~A~~~~~~~l~ 389 (398)
T PRK10747 379 EAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHh
Confidence 88888876654
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.6e-09 Score=101.72 Aligned_cols=232 Identities=16% Similarity=0.169 Sum_probs=118.2
Q ss_pred chhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC-CCCH------HHHHH
Q 005905 25 VSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-NPTL------STFNM 97 (670)
Q Consensus 25 ~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~------~~y~~ 97 (670)
++.|+...|.|+ +.+.+.|+++|-+|.+.+ |.+...|..+..++.+.|.++.|+++.+.+. .||. ...-.
T Consensus 36 sr~Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~q 112 (389)
T COG2956 36 SRDYVKGLNFLL-SNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQ 112 (389)
T ss_pred cHHHHhHHHHHh-hcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 445666666665 456677777777777655 5555566666666666667777766665432 3332 12233
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005905 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVL 177 (670)
Q Consensus 98 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 177 (670)
|..-|...|-++.|..+|..+.+.|.. - ....-.|+..|-...++++|+++-
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~ef-a---------------------------~~AlqqLl~IYQ~treW~KAId~A 164 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEGEF-A---------------------------EGALQQLLNIYQATREWEKAIDVA 164 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcchhh-h---------------------------HHHHHHHHHHHHHhhHHHHHHHHH
Confidence 444555566666666666655543210 0 111223444455555555555555
Q ss_pred HHHhhCCCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005905 178 AEMNAEVHPVDPDH----ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253 (670)
Q Consensus 178 ~~m~~~~~~~~pd~----~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 253 (670)
+++.+.+ -.+.. ..|.-+...+....+++.|..++++..+.+ +.++.+--.+-+.+...|++..|.+.++...
T Consensus 165 ~~L~k~~--~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~ 241 (389)
T COG2956 165 ERLVKLG--GQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVL 241 (389)
T ss_pred HHHHHcC--CccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHH
Confidence 5544321 11110 112223333333455555555555555544 2233333344455555566666666665555
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 005905 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 290 (670)
Q Consensus 254 ~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~ 290 (670)
+.+..--..+...|..+|.+.|+.+++...+..+.+.
T Consensus 242 eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 242 EQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 5544333344555555555555555555555555544
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.1e-08 Score=99.99 Aligned_cols=233 Identities=16% Similarity=0.050 Sum_probs=160.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHcCCCCCHHHHHH
Q 005905 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD-RAREVYKMIHKYNIKGTPEVYTI 231 (670)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~-~A~~~~~~m~~~~~~~~~~~~~~ 231 (670)
+...-+....+.-...++++|..+|+++.+..+----|..+|+.++-.-.....+. .|..++ .+. +-.+.|...
T Consensus 261 ~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~-~id----KyR~ETCCi 335 (559)
T KOG1155|consen 261 SMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVS-NID----KYRPETCCI 335 (559)
T ss_pred cHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHH-Hhc----cCCccceee
Confidence 33333333344455667888888888887763211224566666653322211111 122221 111 223466777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC
Q 005905 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311 (670)
Q Consensus 232 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~ 311 (670)
+.+-|+-.++.++|...|+..++.+.. ....|+.+-.-|....+...|.+-++..++.+ +.|-..|-.|.++|.-.+.
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~M 413 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKM 413 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcc
Confidence 778888888888888888888877654 55677777888888888888888888888775 6677888888888888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005905 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391 (670)
Q Consensus 312 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 391 (670)
..-|+-.|++..+.. +-|...|.+|..+|.+.++.++|++.|.+....| ..+...+..|...+.+.++.++|.++|..
T Consensus 414 h~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek 491 (559)
T KOG1155|consen 414 HFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEK 491 (559)
T ss_pred hHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 888888888877665 3478888888888888888888888888887755 34667788888888888888888888876
Q ss_pred HHH
Q 005905 392 AKE 394 (670)
Q Consensus 392 m~~ 394 (670)
-++
T Consensus 492 ~v~ 494 (559)
T KOG1155|consen 492 YVE 494 (559)
T ss_pred HHH
Confidence 654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.6e-09 Score=110.75 Aligned_cols=267 Identities=13% Similarity=0.081 Sum_probs=201.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 005905 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 184 (670)
Q Consensus 105 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 184 (670)
.|+++.|.+.+....+.. ++...+ .++ ...+..+.|+++.|...|.++.+.
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~-~ll-------------------------aA~aA~~~g~~~~A~~~l~~A~~~- 147 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVN-YLL-------------------------AAEAAQQRGDEARANQHLERAAEL- 147 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHH-HHH-------------------------HHHHHHHCCCHHHHHHHHHHHHhc-
Confidence 699999998877655542 222222 222 123346788999999999999764
Q ss_pred CCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-
Q 005905 185 HPVDPDHITIG--ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE- 261 (670)
Q Consensus 185 ~~~~pd~~t~~--~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~- 261 (670)
.|+...+. .....+...|+++.|...++.+.+.. +.++.+...+...|.+.|++++|.+++..+.+.+..++.
T Consensus 148 ---~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~ 223 (398)
T PRK10747 148 ---ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEH 223 (398)
T ss_pred ---CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHH
Confidence 56654333 33567889999999999999998876 677889999999999999999999999999988765333
Q ss_pred ------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 005905 262 ------VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 335 (670)
Q Consensus 262 ------~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 335 (670)
.+|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|.+++++..+. .||....
T Consensus 224 ~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~- 299 (398)
T PRK10747 224 RAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV- 299 (398)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH-
Confidence 24445555555566667777777776443 2557888889999999999999999999988874 4455322
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005905 336 ALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413 (670)
Q Consensus 336 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r 413 (670)
++.+....++.+++++..+...+. .|+ ...+..+-..|.+.+++++|.+.|+.+.+. .|+...|..+..++.+
T Consensus 300 -~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~ 373 (398)
T PRK10747 300 -LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDR 373 (398)
T ss_pred -HHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHH
Confidence 344555669999999999998875 454 556778888999999999999999998875 5999888877777554
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.5e-09 Score=97.92 Aligned_cols=268 Identities=18% Similarity=0.205 Sum_probs=203.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 005905 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 184 (670)
Q Consensus 105 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 184 (670)
+.+.++|..+|-+|.+. |..||. +--+|.+.|-+.|..++|+.+.+.+...
T Consensus 48 s~Q~dKAvdlF~e~l~~----d~~t~e------------------------~~ltLGnLfRsRGEvDRAIRiHQ~L~~s- 98 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE----DPETFE------------------------AHLTLGNLFRSRGEVDRAIRIHQTLLES- 98 (389)
T ss_pred hcCcchHHHHHHHHHhc----CchhhH------------------------HHHHHHHHHHhcchHHHHHHHHHHHhcC-
Confidence 46788999999999873 333332 2335677788889999999999988764
Q ss_pred CCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 005905 185 HPVDPDH------ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258 (670)
Q Consensus 185 ~~~~pd~------~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 258 (670)
||. ...-.+..-|...|-+|.|+.+|..+.+.+ ..-......|+..|-+..+|++|+++-+++.+.+..
T Consensus 99 ----pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q 173 (389)
T COG2956 99 ----PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ 173 (389)
T ss_pred ----CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc
Confidence 442 223345667889999999999999998755 334567888999999999999999999999988766
Q ss_pred CCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 005905 259 PDEV----FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334 (670)
Q Consensus 259 p~~~----t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 334 (670)
+..+ .|.-+...+....+.+.|...+....+.+ +..+..--.+.+.+...|+++.|.+.++.+.+.+..--..+.
T Consensus 174 ~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl 252 (389)
T COG2956 174 TYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVL 252 (389)
T ss_pred cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHH
Confidence 5543 56777777777889999999999998876 344555557788999999999999999999987654445677
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005905 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 411 (670)
Q Consensus 335 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 411 (670)
..|..+|.+.|+.++.+..+.++.+. .+....-..+..--....-.+.|..++.+-... .|+...+..+|+.-
T Consensus 253 ~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~ 325 (389)
T COG2956 253 EMLYECYAQLGKPAEGLNFLRRAMET--NTGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYH 325 (389)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHc--cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhh
Confidence 88999999999999999999999885 333333333434333444456677666555443 59999999999863
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.4e-09 Score=111.52 Aligned_cols=290 Identities=10% Similarity=-0.003 Sum_probs=165.1
Q ss_pred hhhhHHHHHHHhhhCC--CCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhc
Q 005905 73 SQKAIKEAFRFFKLVP--NPT-LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149 (670)
Q Consensus 73 ~~~~~~~A~~~~~~~~--~~~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~ 149 (670)
..|+++.|.+.+.... .|+ ...|-....+....|+++.|...+.+..+.. |+....
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~------------------- 154 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNIL------------------- 154 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchH-------------------
Confidence 4577777777776553 233 2333344566777788888888888876542 332110
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 005905 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229 (670)
Q Consensus 150 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 229 (670)
..-.....+...|+++.|...++.+.+.. +-+...+..+...+...|+++.|.+.+..+.+.+..+ ...+
T Consensus 155 ------~~~~~a~l~l~~~~~~~Al~~l~~l~~~~---P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~-~~~~ 224 (409)
T TIGR00540 155 ------VEIARTRILLAQNELHAARHGVDKLLEMA---PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD-DEEF 224 (409)
T ss_pred ------HHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC-HHHH
Confidence 01112344555667777777777776641 2234456666677777777777777777777665332 2222
Q ss_pred H-HHHHHH---HhcCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHH-HH
Q 005905 230 T-IAINCC---SQTGDWEFACSVYDDMTKKGVI---PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY-SS 301 (670)
Q Consensus 230 ~-~li~~~---~~~g~~~~A~~l~~~m~~~g~~---p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~-~~ 301 (670)
. .-..++ ...+..+++.+.+..+.+.... .+...+..+...+...|+.++|.+++++..+.........+ ..
T Consensus 225 ~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l 304 (409)
T TIGR00540 225 ADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLC 304 (409)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHH
Confidence 1 111111 2222223333344444433221 25666667777777777777777777777765422211111 11
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 005905 302 LMGACSNAKNWQKALELYEHMKSIKLKPTV--STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379 (670)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 379 (670)
..-.....++.+.+.+.++...+.. +-|. ....++...|.+.|++++|.+.|+........|+...+..+...+.+.
T Consensus 305 ~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~ 383 (409)
T TIGR00540 305 LPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQA 383 (409)
T ss_pred HHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHc
Confidence 1112233466677777777666542 1233 455577777777888888888777433333467777777777777778
Q ss_pred CCHHHHHHHHHHHHH
Q 005905 380 DDVEVGLMLLSQAKE 394 (670)
Q Consensus 380 g~~~~a~~~~~~m~~ 394 (670)
|+.++|.+++++...
T Consensus 384 g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 384 GDKAEAAAMRQDSLG 398 (409)
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888777776543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.8e-09 Score=104.41 Aligned_cols=205 Identities=18% Similarity=0.190 Sum_probs=166.5
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHH---HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 005905 165 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL---MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 241 (670)
Q Consensus 165 ~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 241 (670)
..+|++++|.+.|.+.... |...-.+| .-.+-..|++++|++.|-++... +..+..+...+.+.|-...+
T Consensus 501 f~ngd~dka~~~ykeal~n------dasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led 573 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNN------DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLED 573 (840)
T ss_pred eecCcHHHHHHHHHHHHcC------chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhC
Confidence 3478999999999998764 33332233 33567889999999999877553 23456788889999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005905 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321 (670)
Q Consensus 242 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 321 (670)
...|++++.+.... ++-|...++-|.+.|-+.|+-.+|++.+-+--+- ++.+..+...|...|....-+++|...|++
T Consensus 574 ~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ek 651 (840)
T KOG2003|consen 574 PAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEK 651 (840)
T ss_pred HHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999776544 3447889999999999999999999988766544 577888999999999999999999999998
Q ss_pred HHhCCCCCCHHHHHHHHHHHH-hCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 005905 322 MKSIKLKPTVSTMNALITALC-DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381 (670)
Q Consensus 322 m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 381 (670)
..-. +|+..-|..||..|. +.|++.+|++++++..+. ++-|......|++.|...|.
T Consensus 652 aali--qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 652 AALI--QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHhc--CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 6543 899999999987665 689999999999998775 77788888888888887775
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-11 Score=124.10 Aligned_cols=262 Identities=16% Similarity=0.145 Sum_probs=114.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005905 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVL 177 (670)
Q Consensus 98 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 177 (670)
+...+.+.|++++|+++++......-+|+ |...|..+...+...++.+.|...|
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~--------------------------~~~~~~~~a~La~~~~~~~~A~~ay 67 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPD--------------------------DPEYWRLLADLAWSLGDYDEAIEAY 67 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccc--------------------------ccccccccccccccccccccccccc
Confidence 35566677777777777754433321222 2223444445556678899999999
Q ss_pred HHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-
Q 005905 178 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG- 256 (670)
Q Consensus 178 ~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g- 256 (670)
+++...+. -+...+..++.. ...+++++|.+++....+.. +++..+..++..+.+.++++++..+++.+....
T Consensus 68 ~~l~~~~~---~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 141 (280)
T PF13429_consen 68 EKLLASDK---ANPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPA 141 (280)
T ss_dssp --------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T-
T ss_pred cccccccc---cccccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC
Confidence 99987531 234456666666 78999999999998776543 456778889999999999999999999987543
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 005905 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 336 (670)
Q Consensus 257 ~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 336 (670)
...+...|..+...+.+.|+.++|...+++..+.. +-|..+.+.++..+...|+.+++.+++....+.. +.|...|..
T Consensus 142 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~ 219 (280)
T PF13429_consen 142 APDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDA 219 (280)
T ss_dssp --T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHH
Confidence 34577888899999999999999999999999875 4467889999999999999999999988877653 446667889
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 337 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 337 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 394 (670)
+..+|...|+.++|+..|++.... .+.|..+...+..++...|+.++|.++..+..+
T Consensus 220 la~~~~~lg~~~~Al~~~~~~~~~-~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 220 LAAAYLQLGRYEEALEYLEKALKL-NPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHT-----------------
T ss_pred HHHHhccccccccccccccccccc-ccccccccccccccccccccccccccccccccc
Confidence 999999999999999999998874 244777888899999999999999999877643
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.5e-12 Score=88.31 Aligned_cols=50 Identities=30% Similarity=0.639 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005905 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378 (670)
Q Consensus 329 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 378 (670)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777777777777777777777777777777777777777777777754
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.25 E-value=3e-08 Score=105.13 Aligned_cols=281 Identities=12% Similarity=0.026 Sum_probs=196.4
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 005905 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 183 (670)
Q Consensus 104 ~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 183 (670)
..|+++.|.+.+.+..+. .|+.. ..+-....++.+.|+++.|.+.|.+..+.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~--------------------------~~~llaA~aa~~~g~~~~A~~~l~~a~~~ 147 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPV--------------------------LNLIKAAEAAQQRGDEARANQHLEEAAEL 147 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCH--------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 467888888877665553 23321 12223345667889999999999998764
Q ss_pred CCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 005905 184 VHPVDPDHI--TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261 (670)
Q Consensus 184 ~~~~~pd~~--t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 261 (670)
.|+.. ...+....+...|+++.|...++.+.+.. +.++.++..+...|.+.|++++|.+++..+.+.++.+..
T Consensus 148 ----~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~ 222 (409)
T TIGR00540 148 ----AGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE 222 (409)
T ss_pred ----CCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH
Confidence 35542 33345778889999999999999999976 667889999999999999999999999999998765333
Q ss_pred HHHHHHHHHH---HhcCChHHHHHHHHHHHHCCC---CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--
Q 005905 262 VFLSALIDFA---GHAGKVEAAFEILQEAKNQGI---SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST-- 333 (670)
Q Consensus 262 ~t~~~li~~~---~~~g~~~~A~~i~~~m~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-- 333 (670)
.....-..++ ...+..+.+.+.+..+.+... +.+...+..+...+...|+.++|.+++++..+.. ||...
T Consensus 223 ~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~ 300 (409)
T TIGR00540 223 EFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAIS 300 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccch
Confidence 2212222222 222333334445555554431 2378889999999999999999999999998764 34332
Q ss_pred -HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005905 334 -MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI---TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409 (670)
Q Consensus 334 -~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 409 (670)
...........++.+.+++.++...+. .|+.. ...++-..|.+.|++++|.+.|+........|+...+..+..
T Consensus 301 ~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ 378 (409)
T TIGR00540 301 LPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAAD 378 (409)
T ss_pred hHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHH
Confidence 122223334457888899999887764 45544 455778889999999999999996555556799988887777
Q ss_pred HHHh--hHHHHHHh
Q 005905 410 MCSR--RYEKARTL 421 (670)
Q Consensus 410 ~~~r--~~~~a~~l 421 (670)
.+-+ ..++|.++
T Consensus 379 ll~~~g~~~~A~~~ 392 (409)
T TIGR00540 379 AFDQAGDKAEAAAM 392 (409)
T ss_pred HHHHcCCHHHHHHH
Confidence 7554 34444443
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.5e-08 Score=97.07 Aligned_cols=217 Identities=12% Similarity=0.062 Sum_probs=149.0
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHH----HHhcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005905 101 VCASSKDSEGAFQVLRLVQEAGL--KADCKLYTTLITTCAKSGKVDA----MFENVKPDRVVFNALITACGQSGAVDRAF 174 (670)
Q Consensus 101 ~~~~~g~~~~A~~~~~~m~~~g~--~pd~~~~~~li~~~~~~g~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 174 (670)
+.-...++++|+.+|+++.+... --|..+|+.++-.-..+.++.- ++..-+--..|...+.+-|+-.++.++|.
T Consensus 271 ~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv 350 (559)
T KOG1155|consen 271 ASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAV 350 (559)
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHH
Confidence 34456788888888888887742 1256677776644333322221 22222223445556666777777788888
Q ss_pred HHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005905 175 DVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253 (670)
Q Consensus 175 ~l~~~m~~~~~~~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 253 (670)
..|++..+- .|. ...|+.+.+-|....+...|.+-|+..++.+ +.|-..|-.|..+|.-.+.+.-|+-.|++..
T Consensus 351 ~YFkRALkL----Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~ 425 (559)
T KOG1155|consen 351 MYFKRALKL----NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKAL 425 (559)
T ss_pred HHHHHHHhc----CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHH
Confidence 888887764 333 4566677777888888888888888777765 5667778888888888888888888887777
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005905 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324 (670)
Q Consensus 254 ~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 324 (670)
+..+. |...|.+|.++|.+.++.++|.+.|......| ..+...+..|...|-+.++.++|...|++-.+
T Consensus 426 ~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 426 ELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred hcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 66433 77778888888888888888888888777766 44557777788888888888888777776543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.4e-08 Score=98.28 Aligned_cols=77 Identities=10% Similarity=0.078 Sum_probs=51.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC--CCC-HHHHHHHHHHHHcCCCHHH
Q 005905 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPT-LSTFNMLMSVCASSKDSEG 110 (670)
Q Consensus 34 ~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~~~y~~li~~~~~~g~~~~ 110 (670)
.+-++|.+++|++.|.+.++.. |..++++......+...|++++..+.-.... .|+ +..+.--.+++-..|++++
T Consensus 124 ~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~e 201 (606)
T KOG0547|consen 124 KFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDE 201 (606)
T ss_pred hhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHH
Confidence 3347899999999999999876 6656777767777888899888777654432 232 2233333445555555555
Q ss_pred HH
Q 005905 111 AF 112 (670)
Q Consensus 111 A~ 112 (670)
|+
T Consensus 202 al 203 (606)
T KOG0547|consen 202 AL 203 (606)
T ss_pred HH
Confidence 43
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.23 E-value=1e-08 Score=99.65 Aligned_cols=195 Identities=14% Similarity=0.066 Sum_probs=92.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005905 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274 (670)
Q Consensus 195 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 274 (670)
..+...+...|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.+++..+.... +...+..+...+...
T Consensus 35 ~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~ 112 (234)
T TIGR02521 35 VQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFLCQQ 112 (234)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHc
Confidence 333344444444444444444443322 223334444444444444444444444444433221 223333444444444
Q ss_pred CChHHHHHHHHHHHHCCC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHH
Q 005905 275 GKVEAAFEILQEAKNQGI-SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 353 (670)
Q Consensus 275 g~~~~A~~i~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 353 (670)
|++++|.+.+....+... ......+..+...|...|++++|...|++..+.. +.+...+..+...+...|++++|...
T Consensus 113 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 191 (234)
T TIGR02521 113 GKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAY 191 (234)
T ss_pred ccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 444444444444443211 1122334445555556666666666666555443 12344555556666666666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005905 354 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393 (670)
Q Consensus 354 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 393 (670)
+++.... .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 192 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 192 LERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6665554 23344444455555556666666666555443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.7e-09 Score=109.39 Aligned_cols=276 Identities=12% Similarity=0.051 Sum_probs=217.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC------CCCHHHHHHHHHHHHcCCCHHHHH
Q 005905 39 GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP------NPTLSTFNMLMSVCASSKDSEGAF 112 (670)
Q Consensus 39 g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~~~~y~~li~~~~~~g~~~~A~ 112 (670)
=+..+|+.+|+.+...- +....+...+.++|...+++++|.++|+.+. -.+...|.+.+--+-+. -++
T Consensus 333 y~~~~A~~~~~klp~h~--~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~L 406 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHH--YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VAL 406 (638)
T ss_pred HHHHHHHHHHHhhHHhc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHH
Confidence 36778999999955443 5666888889999999999999999998764 24677888887554321 222
Q ss_pred HHH-HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHh------cCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 005905 113 QVL-RLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE------NVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEV 184 (670)
Q Consensus 113 ~~~-~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~------~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 184 (670)
..+ +++.... +-.+.+|.++-++|.-.++.+.+.+ .+.| ...+|+.+..-+.....+|.|...|+....
T Consensus 407 s~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-- 483 (638)
T KOG1126|consen 407 SYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-- 483 (638)
T ss_pred HHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--
Confidence 222 3344432 4467899999999999999998665 3445 678999999999999999999999998864
Q ss_pred CCCCCCHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 005905 185 HPVDPDHITIG---ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261 (670)
Q Consensus 185 ~~~~pd~~t~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 261 (670)
.|...|+ -+...|.+.++++.|+-.|+...+.+ +.+.+....+...+-+.|+.++|+.+|++....+.+ |.
T Consensus 484 ----~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~ 557 (638)
T KOG1126|consen 484 ----VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NP 557 (638)
T ss_pred ----CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cc
Confidence 3434555 45678999999999999999999877 667778888888999999999999999999887765 55
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 005905 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330 (670)
Q Consensus 262 ~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 330 (670)
..---.+..+...+++++|+..++++++.- +-+..++..+...|-+.|+.+.|..-|.-+.+.++++.
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 444455666778899999999999998863 55677888999999999999999999998887655443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-07 Score=102.01 Aligned_cols=314 Identities=14% Similarity=0.102 Sum_probs=236.8
Q ss_pred hhhhHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH---
Q 005905 73 SQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM--- 146 (670)
Q Consensus 73 ~~~~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~--- 146 (670)
-.|++++|.+++.++. +.+...|-+|...|-..|+.+++...+-..-.. .+-|...|..+.......|.++.+
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 3599999999998764 457788999999999999999998766433332 344678899999999999988763
Q ss_pred ----HhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005905 147 ----FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH-----ITIGALMKACANAGQVDRAREVYKMI 217 (670)
Q Consensus 147 ----~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~-----~t~~~li~~~~~~g~~~~A~~~~~~m 217 (670)
...-+++...+---+..|-+.|+...|+..|.++.... +|.. .+.-.+++.+...++-+.|.+.++..
T Consensus 230 y~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~---p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 230 YSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD---PPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC---CchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33445565555566788999999999999999998752 2222 22234566777788889999988776
Q ss_pred HHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------------------------CCCCHHHHHHHHH
Q 005905 218 HKY-NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG---------------------------VIPDEVFLSALID 269 (670)
Q Consensus 218 ~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------------------------~~p~~~t~~~li~ 269 (670)
... +-..+...++.++..|.+...++.|......+.... +.++... ..+.-
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~i 385 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMI 385 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhh
Confidence 652 223455678999999999999999999988887622 1222222 12333
Q ss_pred HHHhcCChHHHHHHHHHHHHCC--CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCh
Q 005905 270 FAGHAGKVEAAFEILQEAKNQG--ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347 (670)
Q Consensus 270 ~~~~~g~~~~A~~i~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 347 (670)
+..+....+....+...+.+.. ..-++..|.-+..+|...|++.+|..+|..+......-+...|--+..+|...|.+
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 4455666666666667677666 34456789999999999999999999999999876666788999999999999999
Q ss_pred hHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005905 348 PKTMEVLSDMKSLGLCPNT-ITYSILLVACERKDDVEVGLMLLSQAK 393 (670)
Q Consensus 348 ~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~ 393 (670)
++|++.|+..... .|+. ..-..|-..+.+.|+.++|.+.+..+.
T Consensus 466 e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 466 EEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999874 5543 334455566789999999999998854
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.22 E-value=1e-08 Score=99.59 Aligned_cols=202 Identities=14% Similarity=0.082 Sum_probs=168.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 005905 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231 (670)
Q Consensus 152 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 231 (670)
.....+..+...|...|++++|...|++..... +.+...+..+...+...|++++|.+.+++..+.. +.+...+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~ 104 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD---PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNN 104 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 345677888899999999999999999998752 3346677888889999999999999999998875 556778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC
Q 005905 232 AINCCSQTGDWEFACSVYDDMTKKGVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310 (670)
Q Consensus 232 li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g 310 (670)
+...|...|++++|...|++.......+ ....+..+..++...|++++|...+.+..+.. +.+...+..+...+...|
T Consensus 105 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 105 YGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcC
Confidence 9999999999999999999998753222 34567778888999999999999999998865 445678888999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 311 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
++++|...+++..+.. +.+...+..+...+...|+.++|..+++.+..
T Consensus 184 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 184 QYKDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999988763 45677777888889999999999999888765
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.5e-11 Score=85.36 Aligned_cols=50 Identities=28% Similarity=0.468 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005905 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139 (670)
Q Consensus 90 ~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~ 139 (670)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||++||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999875
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.5e-05 Score=83.19 Aligned_cols=352 Identities=12% Similarity=0.073 Sum_probs=174.2
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhh---hCCCCCHHHHHHHHHHH
Q 005905 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK---LVPNPTLSTFNMLMSVC 102 (670)
Q Consensus 26 ~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~---~~~~~~~~~y~~li~~~ 102 (670)
+..+..|.+-+..-..++|+.++.+..+-= |.+..+. -++.+...++.|..++. +..+.+...|-+....=
T Consensus 377 P~sv~LWKaAVelE~~~darilL~rAvecc--p~s~dLw----lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LE 450 (913)
T KOG0495|consen 377 PRSVRLWKAAVELEEPEDARILLERAVECC--PQSMDLW----LALARLETYENAKKVLNKAREIIPTDREIWITAAKLE 450 (913)
T ss_pred CchHHHHHHHHhccChHHHHHHHHHHHHhc--cchHHHH----HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHH
Confidence 345677888888888888888888887653 4443322 23444556667766654 34456777777776666
Q ss_pred HcCCCHHHHHHHHHH----HHHcCCCCCHHHHHHHHHHHHhcCCHHHH---Hh-----cC--CCCHHHHHHHHHHHHhcC
Q 005905 103 ASSKDSEGAFQVLRL----VQEAGLKADCKLYTTLITTCAKSGKVDAM---FE-----NV--KPDRVVFNALITACGQSG 168 (670)
Q Consensus 103 ~~~g~~~~A~~~~~~----m~~~g~~pd~~~~~~li~~~~~~g~~~~~---~~-----~~--~~~~~~~~~li~~~~~~g 168 (670)
-.+|+.+....+.++ +...|+..+...|-.=...|-..|.+-.. .. ++ .--..+|+.--..|.+.+
T Consensus 451 E~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~ 530 (913)
T KOG0495|consen 451 EANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRP 530 (913)
T ss_pred HhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcc
Confidence 777888877777654 34456666665555444455444443210 00 11 112345555555555555
Q ss_pred CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005905 169 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248 (670)
Q Consensus 169 ~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 248 (670)
.++-|..+|....+. ...+...|......=-..|..+.-..+|++....- +-....|-....-+-..||...|..+
T Consensus 531 ~~~carAVya~alqv---fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~i 606 (913)
T KOG0495|consen 531 AIECARAVYAHALQV---FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVI 606 (913)
T ss_pred hHHHHHHHHHHHHhh---ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHH
Confidence 555555555555442 12223334333333334445555555555444431 22333444444444444555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 005905 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328 (670)
Q Consensus 249 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 328 (670)
+.+..+.... +...|-.-+..-.....++.|..+|.+.... .|+..+|.--+..---.++.++|.+++++..+. -
T Consensus 607 l~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--f 681 (913)
T KOG0495|consen 607 LDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--F 681 (913)
T ss_pred HHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--C
Confidence 5555444332 3444444444444555555555555544432 333444444444444444555555555444432 2
Q ss_pred CC-HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 329 PT-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS-ILLVACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 329 p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~m~~ 394 (670)
|+ ...|-.+-+.+-+.++.+.|.+.|..-.+ ..|+.+-.. .+...=.+.|.+-.|..+|+..+-
T Consensus 682 p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarl 747 (913)
T KOG0495|consen 682 PDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARL 747 (913)
T ss_pred CchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 22 23344444444445555555544443322 233333222 222223344445555555544443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.6e-08 Score=106.07 Aligned_cols=214 Identities=11% Similarity=0.070 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHhhCCCCCCCCH-HHHHHHHHHHH---------HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 005905 170 VDRAFDVLAEMNAEVHPVDPDH-ITIGALMKACA---------NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 239 (670)
Q Consensus 170 ~~~A~~l~~~m~~~~~~~~pd~-~t~~~li~~~~---------~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 239 (670)
.++|+.+|++..+. .|+. ..|..+..++. ..+++++|...+++..+.+ +.+..++..+...+...
T Consensus 277 ~~~A~~~~~~Al~l----dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 277 LQQALKLLTQCVNM----SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHhc----CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Confidence 45666666666553 4432 23333333322 1233566666666666654 44556666666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 005905 240 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319 (670)
Q Consensus 240 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 319 (670)
|++++|...|++..+.+.. +...+..+..++...|++++|...++...+.... +...+..++..+...|++++|...+
T Consensus 352 g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHH
Confidence 6677777766666665432 3445555666666666777777666666665422 2222223333455566666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHH
Q 005905 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL-VACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 320 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~m~~ 394 (670)
++..+...+-+...+..+..+|...|+.++|...+.++... .|+..+....+ ..+...| +.+...++.+.+
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 66554321223444555566666666777776666665442 34443333333 2334444 355555555443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.6e-07 Score=89.37 Aligned_cols=229 Identities=11% Similarity=0.032 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-------
Q 005905 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP------- 226 (670)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~------- 226 (670)
...+-+........|+++.|..-.++..+.. +.+.........+|.+.|++.....+...+.+.+.-.+.
T Consensus 153 l~v~ltrarlll~~~d~~aA~~~v~~ll~~~---pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~ 229 (400)
T COG3071 153 LAVELTRARLLLNRRDYPAARENVDQLLEMT---PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQ 229 (400)
T ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHhC---cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHH
Confidence 3344444445555555555555555554431 222334444555555555555555555555555443332
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHH
Q 005905 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306 (670)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~ 306 (670)
.+|+.+++-....+..+.-...+++.... .+-+...-.+++.-+.+.|+.++|.++..+..+++..++.. ..-.+
T Consensus 230 ~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~ 304 (400)
T COG3071 230 QAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPR 304 (400)
T ss_pred HHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhh
Confidence 23444444444444444433344443221 12233344445555555555555555555555555444411 11123
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005905 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386 (670)
Q Consensus 307 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 386 (670)
.+-++.+.-.+..++-.+.. +-++-.+.+|-..|.+++.+.+|.+.|+...+ ..|+..+|..+..++.+.|+..+|.
T Consensus 305 l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 305 LRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred cCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHH
Confidence 34444444444444332211 11224455555555555555555555554443 3455555555555555555555555
Q ss_pred HHHHHHH
Q 005905 387 MLLSQAK 393 (670)
Q Consensus 387 ~~~~~m~ 393 (670)
+..++..
T Consensus 382 ~~r~e~L 388 (400)
T COG3071 382 QVRREAL 388 (400)
T ss_pred HHHHHHH
Confidence 5555444
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.4e-06 Score=85.87 Aligned_cols=372 Identities=13% Similarity=0.070 Sum_probs=233.8
Q ss_pred hcCCHHHHHHHHHHHH----HcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC------CCCHHHHHHHHHHHHcCC
Q 005905 37 RQGRISECIDLLEDME----RKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP------NPTLSTFNMLMSVCASSK 106 (670)
Q Consensus 37 ~~g~~~~A~~l~~~m~----~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~~~~y~~li~~~~~~g 106 (670)
++|+.+...+++++-. ..|+.-....... =...|-..|.+-.+..+..... ..--.+|+.-...|.+.+
T Consensus 452 ~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~-eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~ 530 (913)
T KOG0495|consen 452 ANGNVDMVEKIIDRGLSELQANGVEINRDQWLK-EAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRP 530 (913)
T ss_pred hcCCHHHHHHHHHHHHHHHhhcceeecHHHHHH-HHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcc
Confidence 7888888888877643 3454322222221 2334555555555544443321 122457777788888888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH-------HHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005905 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA-------MFENVKPDRVVFNALITACGQSGAVDRAFDVLAE 179 (670)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~-------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 179 (670)
.++-|..+|...++- ++.+...|......=-..|..+. +...++...+.|-....-+-..|++..|..++.+
T Consensus 531 ~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~ 609 (913)
T KOG0495|consen 531 AIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQ 609 (913)
T ss_pred hHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 888888888877765 34455666665555445555543 2234556667777777777778888888888887
Q ss_pred HhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 005905 180 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259 (670)
Q Consensus 180 m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 259 (670)
..+. ...+...|..-+..-.....++.|..+|.+... ..|+..+|.--+..---.+..++|++++++.++.-..
T Consensus 610 af~~---~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~- 683 (913)
T KOG0495|consen 610 AFEA---NPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPD- 683 (913)
T ss_pred HHHh---CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc-
Confidence 7664 123455677777777778888888888877665 3456667766666666677788888888777765221
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005905 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 339 (670)
Q Consensus 260 ~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 339 (670)
-...|..+-+.+-+.++++.|.+.|..-.+. ++..+..|-.|...--+.|++-.|+.+++..+-.+ +.|...|-..|.
T Consensus 684 f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir 761 (913)
T KOG0495|consen 684 FHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIR 761 (913)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHH
Confidence 2346666777777888888888777665544 35556677777777777888888888888776555 347778888888
Q ss_pred HHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-H-hhHHH
Q 005905 340 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC-S-RRYEK 417 (670)
Q Consensus 340 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~-~-r~~~~ 417 (670)
.-.+.|..+.|..+..+..+. ++-+...|.--|....+.++-......+ ++.. -|..+.-.+-.++ + +.+++
T Consensus 762 ~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DAL---kkce--~dphVllaia~lfw~e~k~~k 835 (913)
T KOG0495|consen 762 MELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDAL---KKCE--HDPHVLLAIAKLFWSEKKIEK 835 (913)
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHH---Hhcc--CCchhHHHHHHHHHHHHHHHH
Confidence 888888888888777776654 3444556665555555555533333333 2322 2223332232222 2 25666
Q ss_pred HHHhHHH
Q 005905 418 ARTLNEH 424 (670)
Q Consensus 418 a~~l~~a 424 (670)
|...++-
T Consensus 836 ar~Wf~R 842 (913)
T KOG0495|consen 836 AREWFER 842 (913)
T ss_pred HHHHHHH
Confidence 6665543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1e-07 Score=104.98 Aligned_cols=218 Identities=11% Similarity=0.028 Sum_probs=162.1
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005905 167 SGAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245 (670)
Q Consensus 167 ~g~~~~A~~l~~~m~~~~~~~~p-d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 245 (670)
.+++++|...+++..+. .| +...+..+...+...|++++|...|++..+.+ +.+...+..+..+|...|++++|
T Consensus 317 ~~~~~~A~~~~~~Al~l----dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eA 391 (553)
T PRK12370 317 QNAMIKAKEHAIKATEL----DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEA 391 (553)
T ss_pred chHHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 35589999999999875 44 46677778888899999999999999999886 66778899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 005905 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325 (670)
Q Consensus 246 ~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 325 (670)
...+++..+.... +...+..++..+...|++++|...++++.+...+-+...+..+..+|...|++++|...+.++...
T Consensus 392 i~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 392 LQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred HHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 9999999988654 222333344456678999999999999887653335566778888999999999999999987654
Q ss_pred CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005905 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS-LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396 (670)
Q Consensus 326 ~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g 396 (670)
. ..+...++.+...|...| ++|...++.+.+ ....|+...+..++ +.-.|+-+.+..+ +++.+.+
T Consensus 471 ~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 471 E-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLV--LVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred c-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHH--HHHHhhhHHHHHH-HHhhccc
Confidence 2 224455666667777777 588888888765 22334433343333 4446666666665 7776654
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-06 Score=88.54 Aligned_cols=314 Identities=14% Similarity=0.089 Sum_probs=204.7
Q ss_pred HhhhhhHHHHHHHhhhCC--CCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHH
Q 005905 71 CKSQKAIKEAFRFFKLVP--NPT-LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC-KLYTTLITTCAKSGKVDAM 146 (670)
Q Consensus 71 ~~~~~~~~~A~~~~~~~~--~~~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~~~~~li~~~~~~g~~~~~ 146 (670)
|.+.|.+++|+.++.... .|| .+-|.....+|...|+|+++.+--.+.++ +.|+- -.+.--.+++-..|+++++
T Consensus 125 ~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~E~lg~~~ea 202 (606)
T KOG0547|consen 125 FFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAHEQLGKFDEA 202 (606)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHHhhccHHHH
Confidence 455677888888877643 455 66677777777888888877776666665 34543 2344455566666777665
Q ss_pred HhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------H-HhhCCCCCCCCHHHHHHHHHHHH---------------
Q 005905 147 FENVKPDRVVFNALITACGQSGAVDRAFDVLA--------E-MNAEVHPVDPDHITIGALMKACA--------------- 202 (670)
Q Consensus 147 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~--------~-m~~~~~~~~pd~~t~~~li~~~~--------------- 202 (670)
+. .+|-.++..++....-...+.+++. + +.....++-|+.....+....+-
T Consensus 203 l~-----D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksD 277 (606)
T KOG0547|consen 203 LF-----DVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSD 277 (606)
T ss_pred HH-----hhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccch
Confidence 43 1222233333333222222222221 1 22123345566544444443321
Q ss_pred ----------HcC---CHHHHHHHHHHHHHc-CCCC--C---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005905 203 ----------NAG---QVDRAREVYKMIHKY-NIKG--T---------PEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257 (670)
Q Consensus 203 ----------~~g---~~~~A~~~~~~m~~~-~~~~--~---------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 257 (670)
-.+ .++.|...+.+-... -..+ + ..+...-...+.-.|+...|..-|+..++...
T Consensus 278 a~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~ 357 (606)
T KOG0547|consen 278 AALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDP 357 (606)
T ss_pred hhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCc
Confidence 011 233333333221110 0011 1 11122222334567899999999999998876
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 005905 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 337 (670)
Q Consensus 258 ~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 337 (670)
.++. .|--+..+|....+.++..+.|....+.+ +-+..+|..-..++.-.+++++|..-|++..+..+ -++..|-.+
T Consensus 358 ~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~p-e~~~~~iQl 434 (606)
T KOG0547|consen 358 AFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDP-ENAYAYIQL 434 (606)
T ss_pred ccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcCh-hhhHHHHHH
Confidence 6444 26667778999999999999999998876 56678888888888899999999999999987763 367778778
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 338 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 338 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 395 (670)
..+..+.+++++++..|++.++. ++--...|+.....+...++++.|.+.|+..++.
T Consensus 435 ~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 435 CCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 78888999999999999999875 5556788888899999999999999999988874
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1e-07 Score=102.09 Aligned_cols=263 Identities=14% Similarity=0.131 Sum_probs=165.6
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhc
Q 005905 88 PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQS 167 (670)
Q Consensus 88 ~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~ 167 (670)
..|+.+||..+|.-||..|+.+.|- +|.-|....++.+...|+.++......++.+.+. .|-..+|..|..+|...
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---ep~aDtyt~Ll~ayr~h 96 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---EPLADTYTNLLKAYRIH 96 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---CCchhHHHHHHHHHHhc
Confidence 3577788888888888888888877 8888887777777788888887777777665443 57777888888888888
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005905 168 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK-YNIKGTPEVYTIAINCCSQTGDWEFAC 246 (670)
Q Consensus 168 g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~A~ 246 (670)
||+.- |+...+ -...+...+...|.-..-..++..+.- .+.-||.. ..+.-..-.|.++.++
T Consensus 97 GDli~----fe~veq----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 97 GDLIL----FEVVEQ----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLL 159 (1088)
T ss_pred cchHH----HHHHHH----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHH
Confidence 88654 222211 111222333344433333333332211 11122221 2233334456666666
Q ss_pred HHHHHHHHCC-CCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005905 247 SVYDDMTKKG-VIPDEVFLSALIDFAGHAG-KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324 (670)
Q Consensus 247 ~l~~~m~~~g-~~p~~~t~~~li~~~~~~g-~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 324 (670)
+++..|.... ..|-.+ +++-+.... .+++-..+.+...+ .|+..+|.++++.-...|+++.|..++.+|++
T Consensus 160 kll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 6665553221 111111 233332222 23333333332222 57888888888888888888888888888888
Q ss_pred CCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 005905 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381 (670)
Q Consensus 325 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 381 (670)
.|++.+..-|..|+.+ .+...-+..++.-|.+.|+.|+..|+.-.+..|...|.
T Consensus 233 ~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 8888888777777766 77777888888888888888998888888877777555
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.9e-05 Score=79.52 Aligned_cols=345 Identities=14% Similarity=0.096 Sum_probs=190.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC--CCCH-HHHHHHHHHHHcCCCHHHHHH
Q 005905 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTL-STFNMLMSVCASSKDSEGAFQ 113 (670)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~-~~y~~li~~~~~~g~~~~A~~ 113 (670)
..+++..|..+|+..+..+. .+..+-...+..-.+.+.++.|..+|++.. -|-+ ..|-..+..=-..|++..|.+
T Consensus 85 sq~e~~RARSv~ERALdvd~--r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDY--RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhccc--ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHH
Confidence 35677789999999887662 333333334555567788888888887643 1222 234444444455688889999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHh------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 005905 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187 (670)
Q Consensus 114 ~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 187 (670)
+|++-.. ..|+...|.+.|+.=.+...++.+.. .+.|++.+|---..-=.+.|.+..|..+|+.....
T Consensus 163 iferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~---- 236 (677)
T KOG1915|consen 163 IFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF---- 236 (677)
T ss_pred HHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH----
Confidence 9988776 47899999988888888777776443 45788888888777778888888888888887764
Q ss_pred CCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHH--------HHHHH
Q 005905 188 DPDHITIGALMKACA----NAGQVDRAREVYKMIHKYNIKGT--PEVYTIAINCCSQTGDWEFACSV--------YDDMT 253 (670)
Q Consensus 188 ~pd~~t~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l--------~~~m~ 253 (670)
--|...-..+..+++ ++..++.|.-+|+-....- +.+ ...|......=-+-|+.....+. |+.+.
T Consensus 237 ~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v 315 (677)
T KOG1915|consen 237 LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEV 315 (677)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHH
Confidence 122222233333333 4566777777777666542 222 23343333333334443322222 22333
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccH-------HHHHHH---HHHHHhcCCHHHHHHHHHHHH
Q 005905 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI-------ISYSSL---MGACSNAKNWQKALELYEHMK 323 (670)
Q Consensus 254 ~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~-------~~~~~l---i~~~~~~g~~~~A~~~~~~m~ 323 (670)
+.+. -|-.+|--.+..-...|+.+...++|+.....- +|-. .+|--+ +-.-....+++.+.++|+...
T Consensus 316 ~~np-~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l 393 (677)
T KOG1915|consen 316 SKNP-YNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL 393 (677)
T ss_pred HhCC-CCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3322 244455555555555566666666666555432 2211 111111 111123455555555555544
Q ss_pred hCCCCCCHHHHHHHHHHH----HhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 324 SIKLKPTVSTMNALITAL----CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 324 ~~~~~p~~~~~~~li~~~----~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 395 (670)
+. ++....||.-+--.| .++.++..|.+++.... |..|-.-+|...|..=.+.+.+|...++++..++.
T Consensus 394 ~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 394 DL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred hh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 32 122223333222222 24445555555554433 34555555555555555555555555555555543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.1e-06 Score=83.64 Aligned_cols=241 Identities=15% Similarity=0.104 Sum_probs=153.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 005905 161 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 240 (670)
Q Consensus 161 i~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 240 (670)
..+--+.|+.+.|-.++.+..+. .-.++...+.+........|+++.|..-.+.+.+.+ +.++.+......+|.+.|
T Consensus 125 A~AA~qrgd~~~an~yL~eaae~--~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g 201 (400)
T COG3071 125 AEAAQQRGDEDRANRYLAEAAEL--AGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLG 201 (400)
T ss_pred HHHHHhcccHHHHHHHHHHHhcc--CCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhc
Confidence 34555667777777777776553 113344445555566677777777777777777665 555677777777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHH
Q 005905 241 DWEFACSVYDDMTKKGVIPDE-------VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313 (670)
Q Consensus 241 ~~~~A~~l~~~m~~~g~~p~~-------~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 313 (670)
++.....+..+|.+.|+--|. .+|..+++-+...+..+.-...++...++ .+.++..-.+++.-+.++|+.+
T Consensus 202 ~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~ 280 (400)
T COG3071 202 AWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHD 280 (400)
T ss_pred cHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChH
Confidence 777777777777777765443 36677777666666666655566655443 2444555666777777777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005905 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS-LGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392 (670)
Q Consensus 314 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 392 (670)
+|.++.++..+.+..|+. ...-.+.+-++...-++..++-.. .+..| ..+.+|-.-|.+.+.+.+|..+|+..
T Consensus 281 ~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaA 354 (400)
T COG3071 281 EAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAA 354 (400)
T ss_pred HHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 777777777666554441 122234455666555555555433 33333 55666666777777777777777765
Q ss_pred HHCCCCCCHHHHHHHHHHHHh
Q 005905 393 KEDGVIPNLVMFKCIIGMCSR 413 (670)
Q Consensus 393 ~~~g~~p~~~~~~~li~~~~r 413 (670)
.+. .|+..+|+-+-+++.+
T Consensus 355 l~~--~~s~~~~~~la~~~~~ 373 (400)
T COG3071 355 LKL--RPSASDYAELADALDQ 373 (400)
T ss_pred Hhc--CCChhhHHHHHHHHHH
Confidence 554 4777777777776544
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.4e-05 Score=83.25 Aligned_cols=281 Identities=16% Similarity=0.180 Sum_probs=165.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 005905 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQV 114 (670)
Q Consensus 35 l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~ 114 (670)
++++|++-.-...|+..+..=......-+-...+++....+-.+.+++++++...-++..-+--|..+++.+++++|.+.
T Consensus 112 l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~ 191 (835)
T KOG2047|consen 112 LIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQR 191 (835)
T ss_pred HHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHH
Confidence 34788888888888888765432333334445666777778888899998876655555667778889999999999999
Q ss_pred HHHHHHcC------CCCCHHHHHHHHHHHHhcC------CHHHHHhc-CC--CC--HHHHHHHHHHHHhcCCHHHHHHHH
Q 005905 115 LRLVQEAG------LKADCKLYTTLITTCAKSG------KVDAMFEN-VK--PD--RVVFNALITACGQSGAVDRAFDVL 177 (670)
Q Consensus 115 ~~~m~~~g------~~pd~~~~~~li~~~~~~g------~~~~~~~~-~~--~~--~~~~~~li~~~~~~g~~~~A~~l~ 177 (670)
+...+... .+.+.-.|.-+.+..++.. ++|+.+.+ +. +| ...|++|.+-|.+.|.+++|..+|
T Consensus 192 la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvy 271 (835)
T KOG2047|consen 192 LATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVY 271 (835)
T ss_pred HHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 88776432 2445556776666666554 35555553 32 44 457999999999999999999999
Q ss_pred HHHhhCCCCCCCCHHHHHHHHHHHHHc----------------C------CHHHHHHHHHHHHHcC-----------CCC
Q 005905 178 AEMNAEVHPVDPDHITIGALMKACANA----------------G------QVDRAREVYKMIHKYN-----------IKG 224 (670)
Q Consensus 178 ~~m~~~~~~~~pd~~t~~~li~~~~~~----------------g------~~~~A~~~~~~m~~~~-----------~~~ 224 (670)
++.... .....-|..+.++|+.- | +++-...-|+.+.... -+.
T Consensus 272 eeai~~----v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~ 347 (835)
T KOG2047|consen 272 EEAIQT----VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPH 347 (835)
T ss_pred HHHHHh----heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCc
Confidence 998764 23333444555554421 1 1222233333332221 012
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcc---
Q 005905 225 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP------DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG--- 295 (670)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p------~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~--- 295 (670)
++..|..-+.. ..|+..+-...|.+..+. +.| -...|..+...|-..|+++.|..+|++..+...+.-
T Consensus 348 nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dL 424 (835)
T KOG2047|consen 348 NVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDL 424 (835)
T ss_pred cHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHH
Confidence 22333322222 234455555555555432 111 123455566666666666666666666555443221
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005905 296 IISYSSLMGACSNAKNWQKALELYEHM 322 (670)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~m 322 (670)
..+|..-..+=.+..+++.|+++.+..
T Consensus 425 a~vw~~waemElrh~~~~~Al~lm~~A 451 (835)
T KOG2047|consen 425 AEVWCAWAEMELRHENFEAALKLMRRA 451 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence 345555555555666666666655544
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.1e-07 Score=99.81 Aligned_cols=270 Identities=16% Similarity=0.163 Sum_probs=135.6
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC----CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 005905 46 DLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA 121 (670)
Q Consensus 46 ~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~ 121 (670)
..+-.+...|+.|...++.. ++.-|+..|+++.|- +|..|. +-+...|+.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqs-LiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQS-LIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHH-HHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------
Confidence 34566777888766544444 555555667777776 666654 234556888888888887776665
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHH
Q 005905 122 GLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201 (670)
Q Consensus 122 g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~ 201 (670)
.|-..||+.|..+|...|++.. |+.++.| .-.++..+...|.-..-..++..+.-. .+.-||..+ .+.-.
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~-fe~veqd---Le~i~~sfs~~Gvgs~e~~fl~k~~c~-p~~lpda~n---~illl 149 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLIL-FEVVEQD---LESINQSFSDHGVGSPERWFLMKIHCC-PHSLPDAEN---AILLL 149 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHH-HHHHHHH---HHHHHhhhhhhccCcHHHHHHhhcccC-cccchhHHH---HHHHH
Confidence 5778888888888888888765 3322221 122333444444444444444333222 233344332 22223
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 005905 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG-DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 280 (670)
Q Consensus 202 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 280 (670)
.-.|-++.+++++..+..........+ .++-+.... .+++-..+.....+ .|+..+|..++.+..-+|+.+.|
T Consensus 150 v~eglwaqllkll~~~Pvsa~~~p~~v---fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~A 223 (1088)
T KOG4318|consen 150 VLEGLWAQLLKLLAKVPVSAWNAPFQV---FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGA 223 (1088)
T ss_pred HHHHHHHHHHHHHhhCCcccccchHHH---HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhH
Confidence 334444444444444332211110011 122221111 11111111111111 24555555555555555555555
Q ss_pred HHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 005905 281 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 345 (670)
Q Consensus 281 ~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 345 (670)
..++.+|.+.|++.+..-|-.|+-+ .++..-++.+...|.+.|+.|+..|+.-.+..+..+|
T Consensus 224 k~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 224 KNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred HHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 5555555555555554433344332 4555555555555555555555555555444444433
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.8e-08 Score=92.10 Aligned_cols=230 Identities=15% Similarity=0.005 Sum_probs=181.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005905 158 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 237 (670)
Q Consensus 158 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 237 (670)
+.|.++|.+.|.+.+|.+.|+..... .|-..||..+-+.|.+..+.+.|+.+|.+-.+. ++.++....-+...+-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q----~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ----FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc----CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHH
Confidence 57888999999999999999888765 556678888889999999999999999888764 3555555566778888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 005905 238 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317 (670)
Q Consensus 238 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 317 (670)
..++.++|.++|+...+.... +.....++...|.-.++.+.|+.+|+.+.+.|. .+...|+.+.-+|.-.++++-+..
T Consensus 302 am~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHH
Confidence 889999999999998876543 666777777788888899999999999999884 457788888888888899999998
Q ss_pred HHHHHHhCCCCCC--HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 318 LYEHMKSIKLKPT--VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 318 ~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 395 (670)
-|++....--.|+ ...|-.+-......|++.-|.+.|+-..... .-+...++.|.-.-.+.|++++|..+++.....
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 8888775433343 3457777777778899999999998877642 334577887777777889999999998876653
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.7e-06 Score=86.49 Aligned_cols=278 Identities=10% Similarity=0.052 Sum_probs=210.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHH-------HHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHH
Q 005905 123 LKADCKLYTTLITTCAKSGKVDA-------MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195 (670)
Q Consensus 123 ~~pd~~~~~~li~~~~~~g~~~~-------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~ 195 (670)
+.-+......-.+-|-..+++.+ +++..+++...+..=|.++...|+..+-+.+=.++++. .+....+|-
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~---yP~~a~sW~ 316 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL---YPSKALSWF 316 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh---CCCCCcchh
Confidence 33444555555555556666654 44455677777777788888999888888888888775 244468899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHh
Q 005905 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK--GVIPDEVFLSALIDFAGH 273 (670)
Q Consensus 196 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~li~~~~~ 273 (670)
++.--|...|+..+|++.|.+....+ +.-...|-.....|+-.|..++|+..+...-+. |.. -+..| +---|.+
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LY--lgmey~~ 392 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLY--LGMEYMR 392 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHH--HHHHHHH
Confidence 99988888999999999998887655 223467888899999999999999888766442 221 11223 2334778
Q ss_pred cCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCC--CCHHHHHHHHHHHHhCCCh
Q 005905 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS----IKLK--PTVSTMNALITALCDGDQL 347 (670)
Q Consensus 274 ~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~--p~~~~~~~li~~~~~~g~~ 347 (670)
.+.++.|.+.|.+..... +.|+.+.+-+.-..-..+.+.+|...|+.... .+.+ .-..+++.|..+|.+.+++
T Consensus 393 t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred hccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 899999999999988764 77888888888888888999999999987652 1111 1345688899999999999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005905 348 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 411 (670)
Q Consensus 348 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 411 (670)
++|+..|++.... .+-|..|+.++.-.+...|+++.|...|.+... +.|+..+...++..+
T Consensus 472 ~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 472 EEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 9999999998875 355788888888889999999999999986654 679988888887764
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.8e-07 Score=89.32 Aligned_cols=231 Identities=14% Similarity=0.088 Sum_probs=191.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHh------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHH-HHH
Q 005905 126 DCKLYTTLITTCAKSGKVDAMFE------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG-ALM 198 (670)
Q Consensus 126 d~~~~~~li~~~~~~g~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~-~li 198 (670)
|-.--+-+-++|.+.|.+.++.. .-.|-+.||-.|-++|.+..+++.|+.+|.+-... .|-.+||. -+.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~----fP~~VT~l~g~A 297 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS----FPFDVTYLLGQA 297 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc----CCchhhhhhhhH
Confidence 33344678889999998876544 23578889999999999999999999999998864 56666664 356
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 005905 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 278 (670)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 278 (670)
+.+-..++.++|.++|+...+.. +.++.....+...|.-.++++-|+..|+.+++.|+. +...|+.+--+|.-.+++|
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchh
Confidence 67888999999999999998875 667777777888888999999999999999999987 7888998988999999999
Q ss_pred HHHHHHHHHHHCCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHH
Q 005905 279 AAFEILQEAKNQGISVG--IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 356 (670)
Q Consensus 279 ~A~~i~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 356 (670)
-++.-|......--.|+ ..+|-.|.......|++..|.+.|+-....+ ..+..++|.|...-.+.|++++|..+++.
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 99999998876644444 3567778888889999999999999888765 34778999999999999999999999998
Q ss_pred HHhCCCCCC
Q 005905 357 MKSLGLCPN 365 (670)
Q Consensus 357 m~~~g~~p~ 365 (670)
... +.|+
T Consensus 455 A~s--~~P~ 461 (478)
T KOG1129|consen 455 AKS--VMPD 461 (478)
T ss_pred hhh--hCcc
Confidence 776 3555
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.6e-07 Score=91.34 Aligned_cols=268 Identities=15% Similarity=0.068 Sum_probs=211.6
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHh-------cCCCCHHHHHHHHHHHHhcCCH
Q 005905 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-------NVKPDRVVFNALITACGQSGAV 170 (670)
Q Consensus 98 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~ 170 (670)
-..-|...+++.+...+++...+.. ++....+..=|.++...|+..+.|. ..+...++|-++.--|.-.|+.
T Consensus 250 ~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~ 328 (611)
T KOG1173|consen 250 KADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKY 328 (611)
T ss_pred HHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCc
Confidence 3445667889999999999988864 5666677777778889998777654 4566789999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005905 171 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY--NIKGTPEVYTIAINCCSQTGDWEFACSV 248 (670)
Q Consensus 171 ~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~l 248 (670)
.+|.+.|.+...-+... ...|....+.|+-.|.-|+|...|...-+. |. --+..|. .--|.+.+..+.|.+.
T Consensus 329 seARry~SKat~lD~~f---gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~-hlP~LYl--gmey~~t~n~kLAe~F 402 (611)
T KOG1173|consen 329 SEARRYFSKATTLDPTF---GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC-HLPSLYL--GMEYMRTNNLKLAEKF 402 (611)
T ss_pred HHHHHHHHHHhhcCccc---cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC-cchHHHH--HHHHHHhccHHHHHHH
Confidence 99999999886543222 347888999999999999999999776553 21 1123343 3357889999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----C--CCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005905 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ----G--ISVGIISYSSLMGACSNAKNWQKALELYEHM 322 (670)
Q Consensus 249 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~----~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 322 (670)
|.+.....+ -|...++-+--..-..+.+.+|..+|+..... + ...-..+++.|.++|.+++.+++|...|++.
T Consensus 403 f~~A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a 481 (611)
T KOG1173|consen 403 FKQALAIAP-SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA 481 (611)
T ss_pred HHHHHhcCC-CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 999876643 36777777777777789999999999887622 1 1123567899999999999999999999998
Q ss_pred HhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005905 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376 (670)
Q Consensus 323 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 376 (670)
.... +.|..++.++.-.|...|+++.|++.|.+... +.||..+-..++.-+
T Consensus 482 L~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 482 LLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 8765 55999999999999999999999999999775 789998888877643
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.8e-07 Score=95.48 Aligned_cols=239 Identities=16% Similarity=0.118 Sum_probs=172.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC---CCC-CCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHc-----CCC
Q 005905 154 RVVFNALITACGQSGAVDRAFDVLAEMNAE---VHP-VDPDHITI-GALMKACANAGQVDRAREVYKMIHKY-----NIK 223 (670)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---~~~-~~pd~~t~-~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~ 223 (670)
..+...+...|...|+++.|..++.+..+. ..| ..|...+. +.+...|...+++++|..+|+++... | .
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G-~ 277 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFG-E 277 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC-C
Confidence 345555889999999999999999887653 112 13443333 33666788999999999999988653 2 2
Q ss_pred CC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCC-CH-HHHHHHHHHHHhcCChHHHHHHHHHHHHC---
Q 005905 224 GT---PEVYTIAINCCSQTGDWEFACSVYDDMTKK-----GVIP-DE-VFLSALIDFAGHAGKVEAAFEILQEAKNQ--- 290 (670)
Q Consensus 224 ~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~p-~~-~t~~~li~~~~~~g~~~~A~~i~~~m~~~--- 290 (670)
.+ ..+++.|..+|.+.|++++|...++...+. |..+ .. .-++.+...|+..+++++|..+++...+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 22 345677777899999999988888776431 2221 21 24667777889999999999988876542
Q ss_pred CCC----ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC---CCCHHHHHHHHHHHHhCCChhHHHHHHHHHH-
Q 005905 291 GIS----VGIISYSSLMGACSNAKNWQKALELYEHMKSI----KL---KPTVSTMNALITALCDGDQLPKTMEVLSDMK- 358 (670)
Q Consensus 291 ~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~---~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~- 358 (670)
-+. .-..+++.|...|-+.|++++|+++|++.... +. .-.-..++.|...|.+.+++.+|.++|.+-.
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 111 22468999999999999999999999987642 11 1124567788889999999999999998743
Q ss_pred ---hCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005905 359 ---SLGL-CPN-TITYSILLVACERKDDVEVGLMLLSQAK 393 (670)
Q Consensus 359 ---~~g~-~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 393 (670)
..|. .|+ ..+|..|...|...|+++.|.++.+...
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3332 223 4678889999999999999999987765
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.1e-06 Score=88.88 Aligned_cols=294 Identities=12% Similarity=0.085 Sum_probs=196.0
Q ss_pred HHHHhhhhhHHHHHHHhhhCC--CCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCCH
Q 005905 68 FNVCKSQKAIKEAFRFFKLVP--NPTLS-TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT-LITTCAKSGKV 143 (670)
Q Consensus 68 ~~~~~~~~~~~~A~~~~~~~~--~~~~~-~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~-li~~~~~~g~~ 143 (670)
..++...|++++|++.+.... -.|.. ........+.+.|+.++|..+|..+++.+ |+...|-. |..+..-...
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~- 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ- 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc-
Confidence 445677899999999987653 24544 45566788999999999999999999985 56555543 3333321110
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHcCC
Q 005905 144 DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD-RAREVYKMIHKYNI 222 (670)
Q Consensus 144 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~-~A~~~~~~m~~~~~ 222 (670)
....+.+...++|+++... -|......-+.-.+..-..+. .+...+..+...|+
T Consensus 88 ---------------------~~~~~~~~~~~~y~~l~~~----yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kgv 142 (517)
T PF12569_consen 88 ---------------------LSDEDVEKLLELYDELAEK----YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGV 142 (517)
T ss_pred ---------------------cccccHHHHHHHHHHHHHh----CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 0112456667777777654 233222222211122212232 34444566777786
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C----------CCCCH--HHHHHHHHHHHhcCChHHHHHHHHH
Q 005905 223 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK----G----------VIPDE--VFLSALIDFAGHAGKVEAAFEILQE 286 (670)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g----------~~p~~--~t~~~li~~~~~~g~~~~A~~i~~~ 286 (670)
| .+++.|-..|.......-...++...... + -.|.. .++.-+.+.|...|++++|+++++.
T Consensus 143 P---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~ 219 (517)
T PF12569_consen 143 P---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDK 219 (517)
T ss_pred c---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4 57777777777666555555666655432 1 12333 3456667788889999999999999
Q ss_pred HHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH
Q 005905 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366 (670)
Q Consensus 287 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 366 (670)
.+++. +..+..|..-...|-..|++.+|.+.++..++.+. -|-..-+-.+..+.++|+.++|.+++....+.+..|-.
T Consensus 220 aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~ 297 (517)
T PF12569_consen 220 AIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLS 297 (517)
T ss_pred HHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCccc
Confidence 98875 44477888888999999999999999999988764 36666777788888999999999999888776644422
Q ss_pred H------HH--HHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 367 I------TY--SILLVACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 367 ~------t~--~~ll~a~~~~g~~~~a~~~~~~m~~ 394 (670)
. .| .-...+|.+.|++..|++-|....+
T Consensus 298 ~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 298 NLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1 22 2344578899999999888776654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=3e-06 Score=85.59 Aligned_cols=221 Identities=11% Similarity=-0.020 Sum_probs=158.3
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 005905 167 SGAVDRAFDVLAEMNAEVHPVDPD--HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 244 (670)
Q Consensus 167 ~g~~~~A~~l~~~m~~~~~~~~pd--~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 244 (670)
.+..+.++.-+.++.... ...|+ ...|..+...+...|+.++|...|++..+.. +.+..+|+.+...|...|++++
T Consensus 39 ~~~~e~~i~~~~~~l~~~-~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 39 TLQQEVILARLNQILASR-DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred chHHHHHHHHHHHHHccc-cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 346778888888887642 23333 3457777788899999999999999998876 5678899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005905 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324 (670)
Q Consensus 245 A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 324 (670)
|...|++..+.... +..++..+..++...|++++|.+.++...+.. |+..........+...++.++|...|.+...
T Consensus 117 A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 117 AYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 99999999887544 56677888888899999999999999998765 3222122222234556789999999976553
Q ss_pred CCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCC-----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005905 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-----LCP-NTITYSILLVACERKDDVEVGLMLLSQAKEDGV 397 (670)
Q Consensus 325 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~ 397 (670)
.. .|+...| ...+...|+..++ +.+..+.+.. +.| ....|..+...+.+.|++++|...|++..+.+.
T Consensus 194 ~~-~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 194 KL-DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred hC-CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 22 3333222 2233345666555 4555555321 111 235788888899999999999999999988663
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.88 E-value=0.00019 Score=75.11 Aligned_cols=378 Identities=16% Similarity=0.145 Sum_probs=238.6
Q ss_pred CCCchhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----CchHHHHHHHHHHHhhhhhHH---HHHHHhhhCC--CCC
Q 005905 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLL-----DMDKVYHARFFNVCKSQKAIK---EAFRFFKLVP--NPT 91 (670)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~-----~~~~~~~~~l~~~~~~~~~~~---~A~~~~~~~~--~~~ 91 (670)
+.++.........|++.+++++|-+.+......+.. +.+..+...+..+..+.-+.- ..-.+++.+. -+|
T Consensus 166 k~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftD 245 (835)
T KOG2047|consen 166 KVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTD 245 (835)
T ss_pred hcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcH
Confidence 444555555566677889999999999888654321 333333333444433322211 1122344433 133
Q ss_pred --HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH------H----------H--------
Q 005905 92 --LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------D----------A-------- 145 (670)
Q Consensus 92 --~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~------~----------~-------- 145 (670)
-..|++|..-|.+.|.+++|..+|++.++.- ....-|+.+.++|+.-..- + .
T Consensus 246 q~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~ 323 (835)
T KOG2047|consen 246 QLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHM 323 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHH
Confidence 4579999999999999999999999988752 3444455666665532110 0 0
Q ss_pred -HHh----------------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC------HHHHHHHHHHHH
Q 005905 146 -MFE----------------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD------HITIGALMKACA 202 (670)
Q Consensus 146 -~~~----------------~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd------~~t~~~li~~~~ 202 (670)
.|+ .-..++..|..-+.. ..|+..+-...|.+..+. +.|- ...|..+.+.|-
T Consensus 324 a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~---vdP~ka~Gs~~~Lw~~faklYe 398 (835)
T KOG2047|consen 324 ARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT---VDPKKAVGSPGTLWVEFAKLYE 398 (835)
T ss_pred HHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc---cCcccCCCChhhHHHHHHHHHH
Confidence 011 112344555544443 356778888888888764 4443 245777888899
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----------CC-------CHH
Q 005905 203 NAGQVDRAREVYKMIHKYNIKGT---PEVYTIAINCCSQTGDWEFACSVYDDMTKKGV----------IP-------DEV 262 (670)
Q Consensus 203 ~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----------~p-------~~~ 262 (670)
..|+++.|..+|++..+...+.- ..+|..-...=.+..+++.|+++.+.....-- .| +..
T Consensus 399 ~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlk 478 (835)
T KOG2047|consen 399 NNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLK 478 (835)
T ss_pred hcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHH
Confidence 99999999999999988665432 34666666666777888889888876643211 11 223
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHH
Q 005905 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV-STMNALITAL 341 (670)
Q Consensus 263 t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~ 341 (670)
.|+..++.--..|-++....+|+.+.+..+.....+.|- ..-+-...-++++.++|++=...=..|++ ..||..+.-+
T Consensus 479 iWs~y~DleEs~gtfestk~vYdriidLriaTPqii~Ny-AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkf 557 (835)
T KOG2047|consen 479 IWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINY-AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKF 557 (835)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHH
Confidence 566666666677889999999999988775443333332 22234566789999999876554334554 4677776665
Q ss_pred Hh---CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHH
Q 005905 342 CD---GDQLPKTMEVLSDMKSLGLCPNTITYSILLVA--CERKDDVEVGLMLLSQAKEDGVIPN--LVMFKCIIG 409 (670)
Q Consensus 342 ~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a--~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~ 409 (670)
.+ ..+.+.|..+|++..+ |++|...-+.-|+.| =.+.|....|+.++++... ++.+. ..+|+..|.
T Consensus 558 i~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~ 630 (835)
T KOG2047|consen 558 IKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIK 630 (835)
T ss_pred HHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHH
Confidence 53 3468999999999998 777776555555544 2356888899999988654 23332 244555553
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.86 E-value=0.00017 Score=72.88 Aligned_cols=370 Identities=17% Similarity=0.199 Sum_probs=260.7
Q ss_pred hhhhhHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH---
Q 005905 72 KSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--- 145 (670)
Q Consensus 72 ~~~~~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~--- 145 (670)
..++++..|..+|++.. ..+...|-.-+..=.++..+..|..++++.+..=...|. .|---+.+=-..|++..
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHHHhcccHHHHH
Confidence 45678888999998764 466777888888888999999999999999875322233 23333444445566654
Q ss_pred HHh---cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-C
Q 005905 146 MFE---NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY-N 221 (670)
Q Consensus 146 ~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~-~ 221 (670)
+|+ ..+|+...|++.|+-=.+-..++.|..+|++.+- +.|++.+|.-...-=.++|++..|..+|....+. |
T Consensus 163 iferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~----~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 163 IFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL----VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe----ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 455 5789999999999999999999999999999985 5799999998888888999999999999877653 2
Q ss_pred C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHH--------HHHHHHCC
Q 005905 222 I-KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD-EVFLSALIDFAGHAGKVEAAFEI--------LQEAKNQG 291 (670)
Q Consensus 222 ~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~i--------~~~m~~~~ 291 (670)
- ..+...+++....=.++..++.|.-+|+-.++.=.+-. ...|..+...=-+-|+.....+. ++.+++.+
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n 318 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN 318 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence 1 11233455555555667788899999988776532211 34455555444444554433322 34445554
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHH--------HHHhCCChhHHHHHHHHHHhCC
Q 005905 292 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV--STMNALIT--------ALCDGDQLPKTMEVLSDMKSLG 361 (670)
Q Consensus 292 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~--------~~~~~g~~~~A~~l~~~m~~~g 361 (670)
+.|-.+|--.+..-...|+.+...++|+..... ++|-. ..|.-.|. .=....+.+.+.++|+...+.
T Consensus 319 -p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l- 395 (677)
T KOG1915|consen 319 -PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL- 395 (677)
T ss_pred -CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-
Confidence 567778888888888899999999999998754 23321 12322222 122568899999999999883
Q ss_pred CCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hhHHHHHHhHHHhhhhcCCCccc
Q 005905 362 LCPNTITYSILLVAC----ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS--RRYEKARTLNEHVLSFNSGRPQI 435 (670)
Q Consensus 362 ~~p~~~t~~~ll~a~----~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~--r~~~~a~~l~~a~~~~~~~~~~~ 435 (670)
++-..+||.-+--.| .++.++..|.+++...+ |.-|...+|...|.+=. +.++.|..+.+....|.+..
T Consensus 396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~--- 470 (677)
T KOG1915|consen 396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPEN--- 470 (677)
T ss_pred cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHh---
Confidence 555678877554333 47789999999998654 66799999998887644 37888998888777766543
Q ss_pred hhhhH------------HHHHHHHHHHHHcC
Q 005905 436 ENKWT------------SLALMVYREAIVAG 454 (670)
Q Consensus 436 ~~~~~------------~~A~~~~~~m~~~~ 454 (670)
-..|. +.|-.+|.-.+..+
T Consensus 471 c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 471 CYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 23343 34667777776544
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.6e-05 Score=78.37 Aligned_cols=382 Identities=14% Similarity=0.117 Sum_probs=214.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchH-HHHHHHHHHHhhhhhHHHHHHHh-------------------------
Q 005905 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDK-VYHARFFNVCKSQKAIKEAFRFF------------------------- 84 (670)
Q Consensus 31 ~~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~------------------------- 84 (670)
..|...++|++++|++...+++..+ |.+. .++..+. ...+.+.+++|+.+.
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvV-alIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVV-ALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHh-hhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHccc
Confidence 3455557888888888888888776 3332 2332222 223344555554332
Q ss_pred --------hhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHhcCC-CCH
Q 005905 85 --------KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA-DCKLYTTLITTCAKSGKVDAMFENVK-PDR 154 (670)
Q Consensus 85 --------~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~~~~~~~-~~~ 154 (670)
....+.|..+...=...|.+.+++++|+.+|+.+.+++..- |...-..++.+-.... .+ ..+.++ ...
T Consensus 95 ~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~-~~-~~q~v~~v~e 172 (652)
T KOG2376|consen 95 LDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQ-VQ-LLQSVPEVPE 172 (652)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhh-HH-HHHhccCCCc
Confidence 21222233333344567788899999999999988776421 1222223332222211 11 222211 112
Q ss_pred HHHHH---HHHHHHhcCCHHHHHHHHHHHhh--------CCCCCCCCHHHH-----HHHHHHHHHcCCHHHHHHHHHHHH
Q 005905 155 VVFNA---LITACGQSGAVDRAFDVLAEMNA--------EVHPVDPDHITI-----GALMKACANAGQVDRAREVYKMIH 218 (670)
Q Consensus 155 ~~~~~---li~~~~~~g~~~~A~~l~~~m~~--------~~~~~~pd~~t~-----~~li~~~~~~g~~~~A~~~~~~m~ 218 (670)
.+|.. ....+...|++.+|+++++...+ ...+ .-+...= .-+.-.+-..|+-++|..+|....
T Consensus 173 ~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~-eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 173 DSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTN-EEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccc-hhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 23333 34456788999999999988821 1101 1111111 122334557899999999999998
Q ss_pred HcCCCCCHH----HHHHHHHHHHhcCCHH-HHHHHHHH----------------------------------------HH
Q 005905 219 KYNIKGTPE----VYTIAINCCSQTGDWE-FACSVYDD----------------------------------------MT 253 (670)
Q Consensus 219 ~~~~~~~~~----~~~~li~~~~~~g~~~-~A~~l~~~----------------------------------------m~ 253 (670)
+.+. +|.. .-|.|+.+-....-++ .++..++. ..
T Consensus 252 ~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~ 330 (652)
T KOG2376|consen 252 KRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELS 330 (652)
T ss_pred HhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 8763 3331 1122221110000000 00000000 00
Q ss_pred -HC-CCCCCHHHHHHHHHHHHhc--CChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHH--------H
Q 005905 254 -KK-GVIPDEVFLSALIDFAGHA--GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE--------H 321 (670)
Q Consensus 254 -~~-g~~p~~~t~~~li~~~~~~--g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--------~ 321 (670)
.. +..| ...+..++..+.+. .....+.+++...-+....-...+.-.++......|+++.|.+++. .
T Consensus 331 a~lp~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss 409 (652)
T KOG2376|consen 331 ASLPGMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSS 409 (652)
T ss_pred HhCCccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhh
Confidence 00 1122 23444555544332 2355666666666554433335566677888899999999999999 6
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh--CCCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHHHHHC
Q 005905 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS--LGLCPNTITYSILLV----ACERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 322 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~ll~----a~~~~g~~~~a~~~~~~m~~~ 395 (670)
+.+.+..|-. ..++...|.+.++.+-|..++.+... ..-.+......+++. --.+.|.-++|...++++.+.
T Consensus 410 ~~~~~~~P~~--V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~ 487 (652)
T KOG2376|consen 410 ILEAKHLPGT--VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF 487 (652)
T ss_pred hhhhccChhH--HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh
Confidence 6665555554 45577778888888888888877654 111233333333333 335679999999999999986
Q ss_pred CCCCCHHHHHHHHHHHHh-hHHHHHHhHH
Q 005905 396 GVIPNLVMFKCIIGMCSR-RYEKARTLNE 423 (670)
Q Consensus 396 g~~p~~~~~~~li~~~~r-~~~~a~~l~~ 423 (670)
. .+|..+..++|.+|++ ..++|..+..
T Consensus 488 n-~~d~~~l~~lV~a~~~~d~eka~~l~k 515 (652)
T KOG2376|consen 488 N-PNDTDLLVQLVTAYARLDPEKAESLSK 515 (652)
T ss_pred C-CchHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 4 5889999999999998 6666666654
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.1e-06 Score=92.72 Aligned_cols=200 Identities=16% Similarity=0.069 Sum_probs=148.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCC---CC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CC-CCCH-
Q 005905 159 ALITACGQSGAVDRAFDVLAEMNAEV---HP-VDPD-HITIGALMKACANAGQVDRAREVYKMIHKY-----NI-KGTP- 226 (670)
Q Consensus 159 ~li~~~~~~g~~~~A~~l~~~m~~~~---~~-~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~~~~- 226 (670)
.+...|...+++++|..+|+++...- .| ..|. ..+++.|..+|.+.|++++|...++...+. +. .+.+
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 46678888999999999998886530 01 1222 456777888899999999998888766432 11 1111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-------C
Q 005905 227 EVYTIAINCCSQTGDWEFACSVYDDMTKK---GVIPD----EVFLSALIDFAGHAGKVEAAFEILQEAKNQG-------I 292 (670)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~----~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~-------~ 292 (670)
..++.+...|+..+++++|..++....+. -+.++ ..+++.|...|.+.|++++|.++|+.+.... .
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 23667788899999999999999876542 12222 3588999999999999999999999886431 1
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCC--CCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 005905 293 SVGIISYSSLMGACSNAKNWQKALELYEHMK----SIKL--KPTVSTMNALITALCDGDQLPKTMEVLSDMK 358 (670)
Q Consensus 293 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~--~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 358 (670)
.-....++.|...|.+.+.+++|.++|.+.. ..|+ +-...+|..|...|...|++++|+++.+...
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2224567888999999999999999998754 3332 2235678999999999999999999988865
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.1e-06 Score=88.86 Aligned_cols=288 Identities=13% Similarity=0.055 Sum_probs=166.3
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC--CCCHHHHHHH-HHHHHcC-----C
Q 005905 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNML-MSVCASS-----K 106 (670)
Q Consensus 35 l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~y~~l-i~~~~~~-----g 106 (670)
+...|++++|++.+++-...- .+...+......++.+.|+.++|...++.+. .|+...|-.. ..+..-. .
T Consensus 14 l~e~g~~~~AL~~L~~~~~~I--~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQI--LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhhC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccc
Confidence 348999999999998865443 5667777778889999999999999998774 4655555444 4444222 2
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 005905 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186 (670)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 186 (670)
+.+.-..+|+++...- |.......+.-.+.. ...|.. .+..++..+... |
T Consensus 92 ~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~--------------g~~F~~------------~~~~yl~~~l~K--g 141 (517)
T PF12569_consen 92 DVEKLLELYDELAEKY--PRSDAPRRLPLDFLE--------------GDEFKE------------RLDEYLRPQLRK--G 141 (517)
T ss_pred cHHHHHHHHHHHHHhC--ccccchhHhhcccCC--------------HHHHHH------------HHHHHHHHHHhc--C
Confidence 4566677777776542 332222211111111 111111 122223333332 2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------------CCCCCHHHH--HHHHHHHHhcCCHHHHHHHHH
Q 005905 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKY--------------NIKGTPEVY--TIAINCCSQTGDWEFACSVYD 250 (670)
Q Consensus 187 ~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~--------------~~~~~~~~~--~~li~~~~~~g~~~~A~~l~~ 250 (670)
+++ +|+.+-..|......+-..+++...... .-+|+...| .-+...|...|++++|+++++
T Consensus 142 vPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id 218 (517)
T PF12569_consen 142 VPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYID 218 (517)
T ss_pred Cch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 222 4444444444444444444444333221 112333333 445666677777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-
Q 005905 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP- 329 (670)
Q Consensus 251 ~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p- 329 (670)
+.++.... ....|..-...+-+.|++.+|.+.++.....+ .-|..+-+-.+..+.++|++++|.+++......+..|
T Consensus 219 ~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~ 296 (517)
T PF12569_consen 219 KAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPL 296 (517)
T ss_pred HHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcc
Confidence 77766432 34566666777777777777777777777665 4456666666677777777777777777665443222
Q ss_pred -CHH----HH--HHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 330 -TVS----TM--NALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 330 -~~~----~~--~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
|.. .| .....+|.+.|++..|++-|....+
T Consensus 297 ~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 297 SNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 111 12 3345677778888777776666544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.2e-05 Score=73.85 Aligned_cols=196 Identities=11% Similarity=0.048 Sum_probs=120.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005905 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274 (670)
Q Consensus 195 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 274 (670)
.-+.-+|...|++..|..-+++.++.+ +.+..+|..+...|.+.|+.+.|.+-|++..+.... +..+.|..-..+|..
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~q 116 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhC
Confidence 344455666666666666666666655 445566666666666667666666666666655433 445556666666666
Q ss_pred CChHHHHHHHHHHHHCCCC-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHH
Q 005905 275 GKVEAAFEILQEAKNQGIS-VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 353 (670)
Q Consensus 275 g~~~~A~~i~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 353 (670)
|++++|...|+.......- .-..+|..+.-+..+.|+.+.|...|++..+.... ...+.-.|.......|++-.|...
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHH
Confidence 6777777666666654321 12345555665666667777777777766655422 344555566666667777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 354 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 354 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 394 (670)
++.....|. ++..+....|..-...|+.+.+-++=..+.+
T Consensus 196 ~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 196 LERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 766666543 6666666666666666766666655544444
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.72 E-value=0.00023 Score=74.74 Aligned_cols=356 Identities=14% Similarity=0.108 Sum_probs=226.7
Q ss_pred HHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC---CCCHHHHHHHHHHH
Q 005905 29 LHSYNRLI---RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVC 102 (670)
Q Consensus 29 ~~~~~~l~---~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~y~~li~~~ 102 (670)
...|...+ ..+++...+++.+.++... |......++..-.....|+-++|....+... ..+.+.|.++.-.+
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHH
Confidence 34455555 4689999999999998854 5554444444444455688899988877654 35678899999999
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHh-------cCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005905 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-------NVKPDRVVFNALITACGQSGAVDRAFD 175 (670)
Q Consensus 103 ~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~ 175 (670)
....++++|+..|+..+..+ +.|...+.-|.-.-+..++++..++ ........|.....++.-.|+...|..
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998864 3355556555555555666654333 334567889999999999999999999
Q ss_pred HHHHHhhCCCCCCCCHHHHHHHH------HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005905 176 VLAEMNAEVHPVDPDHITIGALM------KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 249 (670)
Q Consensus 176 l~~~m~~~~~~~~pd~~t~~~li------~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 249 (670)
+.++..+.. .-.|+...|.-.. ......|.++.|.+.+..-... +......-.+-.+.+.+.+++++|..++
T Consensus 165 il~ef~~t~-~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 165 ILEEFEKTQ-NTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHhh-ccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 999988752 1246655554332 2345678888887776554432 1112223345567788889999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHH-hcCChHHHH-HHHH----------------------------------HHHHCCCC
Q 005905 250 DDMTKKGVIPDEVFLSALIDFAG-HAGKVEAAF-EILQ----------------------------------EAKNQGIS 293 (670)
Q Consensus 250 ~~m~~~g~~p~~~t~~~li~~~~-~~g~~~~A~-~i~~----------------------------------~m~~~~~~ 293 (670)
..++... ||..-|...+..+. +-.+.-++. .+|. .+.+.|++
T Consensus 243 ~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p 320 (700)
T KOG1156|consen 243 RRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP 320 (700)
T ss_pred HHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC
Confidence 9988874 56665554444333 222222222 3333 33333432
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHH----HHHHHhCC----------CCCCHHHHH--HHHHHHHhCCChhHHHHHHHHH
Q 005905 294 VGIISYSSLMGACSNAKNWQKALEL----YEHMKSIK----------LKPTVSTMN--ALITALCDGDQLPKTMEVLSDM 357 (670)
Q Consensus 294 ~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~~----------~~p~~~~~~--~li~~~~~~g~~~~A~~l~~~m 357 (670)
+ ++..+...|-.-...+-..++ ...+...| -+|....|. .++..|-+.|+++.|+..++..
T Consensus 321 ~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~A 397 (700)
T KOG1156|consen 321 S---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLA 397 (700)
T ss_pred c---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 2 333333333322221111111 11111111 145555554 5678888999999999999988
Q ss_pred HhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005905 358 KSLGLCPNTI-TYSILLVACERKDDVEVGLMLLSQAKEDG 396 (670)
Q Consensus 358 ~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~g 396 (670)
... .|+.+ -|..=.+.+.+.|++++|..++++..+..
T Consensus 398 IdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 398 IDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred hcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 764 67754 34444577899999999999999888764
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.6e-05 Score=80.32 Aligned_cols=206 Identities=12% Similarity=-0.017 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005905 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 234 (670)
Q Consensus 155 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 234 (670)
..|..+...|...|+.++|...|++..+.. +.+...|+.+...+...|++++|...|+...+.+ +.+..+|..+..
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~---P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~ 140 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR---PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGI 140 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 456777778889999999999999988752 3346788889999999999999999999998865 456778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHH
Q 005905 235 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314 (670)
Q Consensus 235 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 314 (670)
++...|++++|.+.|+...+.... ..........+...++.++|...+....... .++...+ .+.. ...|+...
T Consensus 141 ~l~~~g~~~eA~~~~~~al~~~P~--~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~~~--~~lg~~~~ 214 (296)
T PRK11189 141 ALYYGGRYELAQDDLLAFYQDDPN--DPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NIVE--FYLGKISE 214 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-HHHH--HHccCCCH
Confidence 899999999999999998876543 2211222223445678999999997755432 3332222 2333 33455444
Q ss_pred HHHHHHHHHhCC---C---CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 005905 315 ALELYEHMKSIK---L---KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372 (670)
Q Consensus 315 A~~~~~~m~~~~---~---~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 372 (670)
+ +.+..+.+.- + +.....|..+...+.+.|++++|+..|++..+.. +||.+-+...
T Consensus 215 ~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~~~ 276 (296)
T PRK11189 215 E-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHRYA 276 (296)
T ss_pred H-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHHHH
Confidence 3 3444443210 0 1134578889999999999999999999988753 3465555443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.5e-05 Score=71.84 Aligned_cols=208 Identities=16% Similarity=0.042 Sum_probs=172.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005905 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 234 (670)
Q Consensus 156 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 234 (670)
+...|.-+|.+.|+...|..-+++..+. .|+ ..+|..+...|-+.|+.+.|.+-|+...+.. +.+..+.|.--.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~----DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH----DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhH
Confidence 4556778899999999999999999885 454 5678888899999999999999999998876 566788899999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHH
Q 005905 235 CCSQTGDWEFACSVYDDMTKKGV-IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313 (670)
Q Consensus 235 ~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 313 (670)
.+|..|.+++|...|++....-. .--..||..+.-+..+.|+.+.|..+|++..+.. +-...+.-.+.....+.|++-
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYA 190 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccch
Confidence 99999999999999999876522 2234578888888889999999999999999886 334556678888999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 005905 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372 (670)
Q Consensus 314 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 372 (670)
.|...++.....+. ++..+.-..|..-...|+.+.+-+.=.++.+. .|...-|..+
T Consensus 191 ~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q~f 246 (250)
T COG3063 191 PARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQTF 246 (250)
T ss_pred HHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHhH
Confidence 99999999887764 78888888888888999999888877777763 5766655443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.0011 Score=69.94 Aligned_cols=348 Identities=11% Similarity=0.093 Sum_probs=214.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhC---CCCCHHHHHHHHHHHHcCCCHHHHHH
Q 005905 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEGAFQ 113 (670)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~y~~li~~~~~~g~~~~A~~ 113 (670)
...++++|++.|......+ |+|..+..-+.-+-.+.++++.....-... .+.....|..+..+.--.|++..|..
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888887776 677666655555555556665554443222 23445678788888888899999999
Q ss_pred HHHHHHHcC-CCCCHHHHHHHHH------HHHhcCCHHHHHhc---CCC---CHHHH-HHHHHHHHhcCCHHHHHHHHHH
Q 005905 114 VLRLVQEAG-LKADCKLYTTLIT------TCAKSGKVDAMFEN---VKP---DRVVF-NALITACGQSGAVDRAFDVLAE 179 (670)
Q Consensus 114 ~~~~m~~~g-~~pd~~~~~~li~------~~~~~g~~~~~~~~---~~~---~~~~~-~~li~~~~~~g~~~~A~~l~~~ 179 (670)
+.+...+.- -.|+...|..... ...+.|..+.+.+. .++ |...+ ..-...+.+.+++++|..+|..
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~ 244 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRR 244 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHH
Confidence 998888764 2466666544332 33456777766663 222 22222 2445678889999999999999
Q ss_pred HhhCCCCCCCCHHHHHHHHHHHH-HcCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005905 180 MNAEVHPVDPDHITIGALMKACA-NAGQVDRAR-EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257 (670)
Q Consensus 180 m~~~~~~~~pd~~t~~~li~~~~-~~g~~~~A~-~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 257 (670)
+... .||.+-|...+..+. +--+.-++. .+|....+. .+.....-..=++......-.+..-.++..+.+.|+
T Consensus 245 Ll~r----nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~ 319 (700)
T KOG1156|consen 245 LLER----NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGV 319 (700)
T ss_pred HHhh----CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCC
Confidence 9875 688777766655444 333333333 556555432 111111111111222222233445566777788887
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH----HCC----------CCccHHH--HHHHHHHHHhcCCHHHHHHHHHH
Q 005905 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAK----NQG----------ISVGIIS--YSSLMGACSNAKNWQKALELYEH 321 (670)
Q Consensus 258 ~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~----~~~----------~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~ 321 (670)
++ ++..+.+.|-.-...+-..++.-.+. ..| -+|.... +-.++..|-+.|+++.|....+.
T Consensus 320 p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~ 396 (700)
T KOG1156|consen 320 PS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDL 396 (700)
T ss_pred Cc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 64 44555555533222221122221111 111 1444444 44678889999999999999998
Q ss_pred HHhCCCCCCHH-HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005905 322 MKSIKLKPTVS-TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 397 (670)
Q Consensus 322 m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~ 397 (670)
...+ .|+.+ .|..=...+...|.+++|...+++.++.. .||...=.--..-..++...++|.++.....+.|.
T Consensus 397 AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 397 AIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred Hhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 8765 55543 44445577889999999999999998753 45554444445556688999999999998888764
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.1e-06 Score=82.23 Aligned_cols=248 Identities=18% Similarity=0.168 Sum_probs=148.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCc-hHHHHHHHHHHHhhhhhHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCCHHHH
Q 005905 33 NRLIRQGRISECIDLLEDMERKGLLDM-DKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGA 111 (670)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~g~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A 111 (670)
...--.|++..++.-.+ ..... +. ......++.+.+...|..+.++.-......|.......+...+....+-+.+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~--~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFS--PENKLERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTST--CHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCC--chhHHHHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHH
Confidence 33345788888887666 22222 22 2334445666777778777766666555567666665555555443455555
Q ss_pred HHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHhcCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 005905 112 FQVLRLVQEAGLKADC-KLYTTLITTCAKSGKVDAMFENVK--PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188 (670)
Q Consensus 112 ~~~~~~m~~~g~~pd~-~~~~~li~~~~~~g~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~ 188 (670)
+.-+++.......++. ........++...|+++++++.+. .+.......+..|.+.++++.|.+.++.|.+. .
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~----~ 161 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKGGSLELLALAVQILLKMNRPDLAEKELKNMQQI----D 161 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTTTCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC----S
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHccCcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc----C
Confidence 5554444333333222 333333345566788888877543 35666777778888888888888888888753 3
Q ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 005905 189 PDHITIGALMKACAN----AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264 (670)
Q Consensus 189 pd~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 264 (670)
.|. +...+..++.. ...+.+|..+|+++.+. ..+++.+.|.+..++...|++++|.+++.+....+.. |..++
T Consensus 162 eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~L 238 (290)
T PF04733_consen 162 EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTL 238 (290)
T ss_dssp CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHH
T ss_pred CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHH
Confidence 443 33344444432 23578888888887654 4667778888888888888888888888887665543 56677
Q ss_pred HHHHHHHHhcCCh-HHHHHHHHHHHHC
Q 005905 265 SALIDFAGHAGKV-EAAFEILQEAKNQ 290 (670)
Q Consensus 265 ~~li~~~~~~g~~-~~A~~i~~~m~~~ 290 (670)
..++.++...|+. +.+.+.+.++...
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 7777777777776 5666777776654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.00016 Score=75.46 Aligned_cols=266 Identities=17% Similarity=0.061 Sum_probs=116.0
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005905 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAE 179 (670)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 179 (670)
..+...|++++|..++++..+.. +.|...+.. ...+...|.. .+..+.+.+.+..
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~-----------------------~~~~~~~~~~l~~ 105 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDF-----------------------SGMRDHVARVLPL 105 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhccc-----------------------ccCchhHHHHHhc
Confidence 45566788899998888887752 223333332 1122222211 2222333333322
Q ss_pred HhhCCCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-
Q 005905 180 MNAEVHPVDPDH-ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV- 257 (670)
Q Consensus 180 m~~~~~~~~pd~-~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~- 257 (670)
.. +..|+. .....+...+...|++++|.+.+++..+.. +.+...+..+..+|...|++++|...+++......
T Consensus 106 ~~----~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~ 180 (355)
T cd05804 106 WA----PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC 180 (355)
T ss_pred cC----cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence 11 112222 222233344555555555555555555543 33344555555555555555555555555544321
Q ss_pred CCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CccHHHH-H--HHHHHHHhcCCHHHHHHH---HHHHHhCCC-
Q 005905 258 IPDE--VFLSALIDFAGHAGKVEAAFEILQEAKNQGI-SVGIISY-S--SLMGACSNAKNWQKALEL---YEHMKSIKL- 327 (670)
Q Consensus 258 ~p~~--~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~-~~~~~~~-~--~li~~~~~~g~~~~A~~~---~~~m~~~~~- 327 (670)
.|+. ..|..+...+...|+.++|..++++...... .+..... + .++.-+...|....+.+. .........
T Consensus 181 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~ 260 (355)
T cd05804 181 SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPD 260 (355)
T ss_pred CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCc
Confidence 1121 1233444555555556655555555532221 1111111 1 222223333322222211 111111000
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCC------CCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHC
Q 005905 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC------PNTITYSILLV--ACERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 328 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~------p~~~t~~~ll~--a~~~~g~~~~a~~~~~~m~~~ 395 (670)
............++...|+.++|..+++.+...... ....+-..++. ++...|+.++|.+.+......
T Consensus 261 ~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 261 HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 001111123455556666777777777666542111 00111222222 345677777777777666553
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.00023 Score=74.22 Aligned_cols=226 Identities=12% Similarity=0.068 Sum_probs=145.6
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005905 163 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN----AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 238 (670)
Q Consensus 163 ~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 238 (670)
.+...|++++|.+++++.... .+.|...+.. ...+.. .+..+.+.+.+.. .....+........+...+..
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~---~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDD---YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHH
Confidence 456788999999999998875 1233344442 222322 4555555555544 112223334455566778899
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CccH--HHHHHHHHHHHhcCCHHHH
Q 005905 239 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI-SVGI--ISYSSLMGACSNAKNWQKA 315 (670)
Q Consensus 239 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~-~~~~--~~~~~li~~~~~~g~~~~A 315 (670)
.|++++|...+++..+.... +...+..+..++...|++++|...+....+... .++. ..|..+...+...|++++|
T Consensus 127 ~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 205 (355)
T cd05804 127 AGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA 205 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999987643 567788888899999999999999999877542 2333 3456788899999999999
Q ss_pred HHHHHHHHhCCC-CCCHHHH-H--HHHHHHHhCCChhHHHHH--HHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHH
Q 005905 316 LELYEHMKSIKL-KPTVSTM-N--ALITALCDGDQLPKTMEV--LSDMKSLGLC--PNTITYSILLVACERKDDVEVGLM 387 (670)
Q Consensus 316 ~~~~~~m~~~~~-~p~~~~~-~--~li~~~~~~g~~~~A~~l--~~~m~~~g~~--p~~~t~~~ll~a~~~~g~~~~a~~ 387 (670)
..+|++...... .+..... + .++.-+...|....+.+. +......... ...........++...|+.++|..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~ 285 (355)
T cd05804 206 LAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDK 285 (355)
T ss_pred HHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHH
Confidence 999999864432 1122211 2 333444445544433333 2221111111 112222355667889999999999
Q ss_pred HHHHHHH
Q 005905 388 LLSQAKE 394 (670)
Q Consensus 388 ~~~~m~~ 394 (670)
.++.+..
T Consensus 286 ~L~~l~~ 292 (355)
T cd05804 286 LLAALKG 292 (355)
T ss_pred HHHHHHH
Confidence 9998876
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.00022 Score=78.15 Aligned_cols=341 Identities=14% Similarity=0.151 Sum_probs=235.7
Q ss_pred CCCchhhHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCCCCCHHHHHHHHH
Q 005905 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMER-KGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMS 100 (670)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~-~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~ 100 (670)
+.|+.+-.++-.+++..+-..+-+++++++.- ...+..+.-+..+++-...+. +.....++..++..-|. -.+..
T Consensus 981 ~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa---~~ia~ 1056 (1666)
T KOG0985|consen 981 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDA---PDIAE 1056 (1666)
T ss_pred cCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCc---hhHHH
Confidence 55677777788888889999999999999863 334444555555444333332 22334444444432111 12334
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHh--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005905 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--NVKPDRVVFNALITACGQSGAVDRAFDVLA 178 (670)
Q Consensus 101 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 178 (670)
.+..++-+++|..+|++. ..+....+.||.-- +.+|.+.+ .-.-....|+.+..+-.+.|.+.+|++-|-
T Consensus 1057 iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie~i---~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyi 1128 (1666)
T KOG0985|consen 1057 IAIENQLYEEAFAIFKKF-----DMNVSAIQVLIENI---GSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYI 1128 (1666)
T ss_pred HHhhhhHHHHHHHHHHHh-----cccHHHHHHHHHHh---hhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHH
Confidence 566677889999999764 34555666666533 44554443 122345679999999999999999998875
Q ss_pred HHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 005905 179 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258 (670)
Q Consensus 179 ~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 258 (670)
+. -|...|..++..+.+.|.+++-.+.+....+..-.| .+=+.||-+|++.++..+..+++. -
T Consensus 1129 ka--------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~--~id~eLi~AyAkt~rl~elE~fi~-------g 1191 (1666)
T KOG0985|consen 1129 KA--------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP--YIDSELIFAYAKTNRLTELEEFIA-------G 1191 (1666)
T ss_pred hc--------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc--cchHHHHHHHHHhchHHHHHHHhc-------C
Confidence 43 245689999999999999999999988877765554 345688999999999887666542 4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005905 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 338 (670)
Q Consensus 259 p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 338 (670)
||......+-+-|...+.++.|.-+|.. +.-|..|...+...|++..|...-++. .+..||-.+-
T Consensus 1192 pN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~Vc 1256 (1666)
T KOG0985|consen 1192 PNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVC 1256 (1666)
T ss_pred CCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHH
Confidence 6888888888999999999999887764 445677888888889999888765543 3778999998
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh
Q 005905 339 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI-PNLVMFKCIIGMCSR 413 (670)
Q Consensus 339 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~r 413 (670)
.+|...+.+.-| +|....+-....-..-++.-|...|-+++...+++... |++ -..-+|+-|.-+|++
T Consensus 1257 faCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L--GLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1257 FACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL--GLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred HHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh--chhHHHHHHHHHHHHHHHh
Confidence 898877765433 34444444555667778888999999998888876433 222 234456666666666
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.6e-06 Score=83.84 Aligned_cols=129 Identities=16% Similarity=0.154 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005905 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY---SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 338 (670)
Q Consensus 262 ~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 338 (670)
......+..|.+.++++.|.+.++.|.+.+ .|.... .+.+..+.-...+.+|..+|+++.+. +.+++.+.|.+.
T Consensus 132 E~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A 208 (290)
T PF04733_consen 132 ELLALAVQILLKMNRPDLAEKELKNMQQID--EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLA 208 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHH
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHH
Confidence 344444444555555555555555544332 221111 11122222223455555555555432 234555555555
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 005905 339 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV-EVGLMLLSQAKE 394 (670)
Q Consensus 339 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~-~~a~~~~~~m~~ 394 (670)
.++...|++++|.+++.+..... +-|..|...++.++...|+. +.+.+++.++..
T Consensus 209 ~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 209 VCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 55555555555555555544321 22334444455555555555 444555555554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.0012 Score=65.70 Aligned_cols=250 Identities=11% Similarity=0.093 Sum_probs=128.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 005905 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG-ALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228 (670)
Q Consensus 150 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~-~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 228 (670)
++-|+....++.+.+...|+.++|...|++.+. +.|+..+-. ...-.+.+.|+++....+...+.... +-+...
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~----~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~ 302 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC----ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASH 302 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh----CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhh
Confidence 344566666666666666666666666666653 344332211 11112335556666555555554332 122233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh
Q 005905 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308 (670)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~ 308 (670)
|-.-........+++.|+.+-++-++.+.. +...|-.--..+...++.++|.-.|+...... +.+...|.-|++.|..
T Consensus 303 wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA 380 (564)
T KOG1174|consen 303 WFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLA 380 (564)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHh
Confidence 333334444556666666666665554322 22233222334555666777766666665543 3456677777777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHH-hCCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHH
Q 005905 309 AKNWQKALELYEHMKSIKLKPTVSTMNALI-TALC-DGDQLPKTMEVLSDMKSLGLCPNTI-TYSILLVACERKDDVEVG 385 (670)
Q Consensus 309 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li-~~~~-~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a 385 (670)
.|.+.+|..+-+.....- ..+..+.+.+. ..+. ....-++|..+++.-.. +.|+-. .-+.+...|...|..+++
T Consensus 381 ~~~~kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~ 457 (564)
T KOG1174|consen 381 QKRFKEANALANWTIRLF-QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDI 457 (564)
T ss_pred hchHHHHHHHHHHHHHHh-hcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchH
Confidence 777776665544332210 12333333321 1111 12223556666665444 355533 233444456777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005905 386 LMLLSQAKEDGVIPNLVMFKCIIGMC 411 (670)
Q Consensus 386 ~~~~~~m~~~g~~p~~~~~~~li~~~ 411 (670)
+.+++.... ..||....+.|-+.+
T Consensus 458 i~LLe~~L~--~~~D~~LH~~Lgd~~ 481 (564)
T KOG1174|consen 458 IKLLEKHLI--IFPDVNLHNHLGDIM 481 (564)
T ss_pred HHHHHHHHh--hccccHHHHHHHHHH
Confidence 777765554 346666666665554
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.4e-08 Score=61.12 Aligned_cols=32 Identities=28% Similarity=0.597 Sum_probs=15.3
Q ss_pred CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 005905 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357 (670)
Q Consensus 326 ~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 357 (670)
|+.||..|||+||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.0011 Score=64.71 Aligned_cols=196 Identities=11% Similarity=0.026 Sum_probs=122.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCCH
Q 005905 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDS 108 (670)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~g~~ 108 (670)
..-++.+.++..|+.+++--...+-. ....+...+...+...|++++|+..+..+. .++...+-.|...+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~E-EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDRE-EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchh-hhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence 44556788999999998877655421 222344445555567899999999987653 45666666666666667888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHh---cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 005905 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE---NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185 (670)
Q Consensus 109 ~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 185 (670)
.+|.++-... +.+.-.-..|+....+.++-++... .+.....---+|.+..-..-.+.+|+++|.+....
T Consensus 108 ~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d-- 180 (557)
T KOG3785|consen 108 IEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD-- 180 (557)
T ss_pred HHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 8888775442 2233444456666667776555332 22222233334444444445689999999999865
Q ss_pred CCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005905 186 PVDPDHITIGALMK-ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 238 (670)
Q Consensus 186 ~~~pd~~t~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 238 (670)
.|+-...+.-+. +|.+..-++-+.++++--.+. ++.++..-|.......+
T Consensus 181 --n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fR 231 (557)
T KOG3785|consen 181 --NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFR 231 (557)
T ss_pred --ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhh
Confidence 566666665443 567788888888888766653 34455555554444433
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00012 Score=72.64 Aligned_cols=281 Identities=11% Similarity=0.030 Sum_probs=181.1
Q ss_pred CCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHH---hc---CCCCHHH-HHHHHHHHHhcCCHHHHHHHH
Q 005905 106 KDSEGAFQVLRLVQEAG-LKADCKLYTTLITTCAKSGKVDAMF---EN---VKPDRVV-FNALITACGQSGAVDRAFDVL 177 (670)
Q Consensus 106 g~~~~A~~~~~~m~~~g-~~pd~~~~~~li~~~~~~g~~~~~~---~~---~~~~~~~-~~~li~~~~~~g~~~~A~~l~ 177 (670)
++...|.+.+-.+.... ++.|+.....+.+++...|+.+++. +. +.|+.++ ...-.-.+.+.|+.+..-.+.
T Consensus 210 ~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~ 289 (564)
T KOG1174|consen 210 FKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALM 289 (564)
T ss_pred cccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHH
Confidence 34444444443333322 5556677778888888888876643 32 2333221 111122345667777777776
Q ss_pred HHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005905 178 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257 (670)
Q Consensus 178 ~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 257 (670)
..+... .+-....|-.-+.......++..|+.+-++..+.+ +.+...|-.--..+.+.|++++|.-.|+..+....
T Consensus 290 ~~Lf~~---~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap 365 (564)
T KOG1174|consen 290 DYLFAK---VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP 365 (564)
T ss_pred HHHHhh---hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcch
Confidence 666543 11222233333344445677888888888777765 44455555555677788888888888888766532
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHH-HHHHh-cCCHHHHHHHHHHHHhCCCCCC-HHHH
Q 005905 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSN-AKNWQKALELYEHMKSIKLKPT-VSTM 334 (670)
Q Consensus 258 ~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li-~~~~~-~g~~~~A~~~~~~m~~~~~~p~-~~~~ 334 (670)
-+...|.-|+..|...|+..+|..+-....+. ++.+..+.+.+. ..|.- ..--++|.+++++-... .|+ ....
T Consensus 366 -~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV 441 (564)
T KOG1174|consen 366 -YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAV 441 (564)
T ss_pred -hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHH
Confidence 26678888888888888888888776665543 234455554442 23322 23357888888876654 454 4456
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005905 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396 (670)
Q Consensus 335 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g 396 (670)
+.+...+...|..++++.++++-.. ..||....+.|-+.+...+.+++|...|......+
T Consensus 442 ~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 442 NLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 6777778888999999999988776 47898989999888888999999999998777643
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00028 Score=72.69 Aligned_cols=368 Identities=13% Similarity=0.058 Sum_probs=202.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC--CCC-HHHHHHHHHHHHcCCC
Q 005905 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPT-LSTFNMLMSVCASSKD 107 (670)
Q Consensus 31 ~~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~~~y~~li~~~~~~g~ 107 (670)
--|+.+..|+++.|+.+|-+..... |.+.++++.=...+.+.+++++|+.=-.+-. .|+ ...|+-...++.-.|+
T Consensus 8 kgnaa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 8 KGNAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHHhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhccc
Confidence 3467778999999999999998877 7787777777778888899998887654432 344 4579999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHh------cCCC--------CHHHHHHHHHHH---------
Q 005905 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE------NVKP--------DRVVFNALITAC--------- 164 (670)
Q Consensus 108 ~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~------~~~~--------~~~~~~~li~~~--------- 164 (670)
+++|+..|.+-++.. +.|...++-|..++.........|. ++.. ....|..++..+
T Consensus 86 ~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 999999999887753 3455667777777622211111111 0000 000011111000
Q ss_pred -HhcCCHHHHHHHH---------------------------------HHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 005905 165 -GQSGAVDRAFDVL---------------------------------AEMNAEVHPVDPDHITIGALMKACANAGQVDRA 210 (670)
Q Consensus 165 -~~~g~~~~A~~l~---------------------------------~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A 210 (670)
....++..|...+ .++..+. ...--..-...+.++..+..+++.|
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~-~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEER-RVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHH-HHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 0000000000000 0000000 0000112233344444444444444
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHHhcCChHHHHHH
Q 005905 211 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL-------SALIDFAGHAGKVEAAFEI 283 (670)
Q Consensus 211 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-------~~li~~~~~~g~~~~A~~i 283 (670)
.+-|....... .+..-++..-.+|...|.+.++...-+...+.|-. ...-| ..+-.+|.+.++++.|...
T Consensus 244 ~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~ 320 (539)
T KOG0548|consen 244 IQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKY 320 (539)
T ss_pred HHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence 44444444332 22222333334444444444433333333332211 01111 1111233333444444444
Q ss_pred HHHHHHCCCCcc------------------------H-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005905 284 LQEAKNQGISVG------------------------I-ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 338 (670)
Q Consensus 284 ~~~m~~~~~~~~------------------------~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 338 (670)
|.+.....-.|+ . .-...=...+.+.|++..|...|.++.... +-|...|..-.
T Consensus 321 ~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRA 399 (539)
T KOG0548|consen 321 YQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRA 399 (539)
T ss_pred HHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHH
Confidence 443332221221 1 111122455678999999999999998877 45889999999
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005905 339 TALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413 (670)
Q Consensus 339 ~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r 413 (670)
.+|.+.|.+..|+.=-+...+. .|+ ...|..=..++....+++.|.+.|.+..+.. |+..- +++.+.|
T Consensus 400 ac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e---~~~~~~r 468 (539)
T KOG0548|consen 400 ACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAE---AIDGYRR 468 (539)
T ss_pred HHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHH---HHHHHHH
Confidence 9999999999999987777764 444 4445555556677889999999999888765 54433 4444444
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.1e-07 Score=59.30 Aligned_cols=32 Identities=25% Similarity=0.574 Sum_probs=22.3
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005905 291 GISVGIISYSSLMGACSNAKNWQKALELYEHM 322 (670)
Q Consensus 291 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 322 (670)
|+.||..+||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777665
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00026 Score=68.65 Aligned_cols=327 Identities=16% Similarity=0.118 Sum_probs=196.2
Q ss_pred CCchhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC--CCCHHHH-HHHH
Q 005905 23 HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTF-NMLM 99 (670)
Q Consensus 23 ~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~y-~~li 99 (670)
.++...+..-+.++..|++.+|+.-|....+.+ |.+......-...+...|...-|+.-+.+.. .||-..- -.-.
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg 113 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence 345555666677777888888888888887766 5443322223334444455555554444432 3442211 1112
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHH--HHHHHHHhcCCHHHHHHHH
Q 005905 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFN--ALITACGQSGAVDRAFDVL 177 (670)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~l~ 177 (670)
..+.+.|.+++|..=|+..++.. |+..+ ...++.+ +.+....|+ ..+..+.-.|+...|+...
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~--~s~~~---~~eaqsk----------l~~~~e~~~l~~ql~s~~~~GD~~~ai~~i 178 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHE--PSNGL---VLEAQSK----------LALIQEHWVLVQQLKSASGSGDCQNAIEMI 178 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC--CCcch---hHHHHHH----------HHhHHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 45667888888888888877763 32211 1111211 222222333 4456677788999999999
Q ss_pred HHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005905 178 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257 (670)
Q Consensus 178 ~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 257 (670)
..+.+. .+-|...|..-..+|...|.+..|+.-++...+.. ..+...+.-+-..+...|+.+.++...++.++.+
T Consensus 179 ~~llEi---~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld- 253 (504)
T KOG0624|consen 179 THLLEI---QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD- 253 (504)
T ss_pred HHHHhc---CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC-
Confidence 888864 23355566667788888999999988887777665 3455666667777888899999988888887763
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---H
Q 005905 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST---M 334 (670)
Q Consensus 258 ~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---~ 334 (670)
||....-. .| ..+.+..+.+..|.+ ....++|.++..-.+...+..+.-..+. +
T Consensus 254 -pdHK~Cf~---~Y---KklkKv~K~les~e~----------------~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~ 310 (504)
T KOG0624|consen 254 -PDHKLCFP---FY---KKLKKVVKSLESAEQ----------------AIEEKHWTECLEAGEKVLKNEPEETMIRYNGF 310 (504)
T ss_pred -cchhhHHH---HH---HHHHHHHHHHHHHHH----------------HHhhhhHHHHHHHHHHHHhcCCcccceeeeee
Confidence 45432111 11 122222222222222 2345566666666666665533322333 3
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005905 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKEDG 396 (670)
Q Consensus 335 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g 396 (670)
..+-.+|...|++.+|++.-.+... +.|| ..++.--..||.-...++.|+.-|+...+.+
T Consensus 311 r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 311 RVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred heeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 3455566677888888888777776 4555 6677777777777777888887777766643
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.0015 Score=77.56 Aligned_cols=324 Identities=10% Similarity=-0.008 Sum_probs=174.0
Q ss_pred hhhhhHHHHHHHhhhCCC----CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC------CCCH--HHHHHHHHHHHh
Q 005905 72 KSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL------KADC--KLYTTLITTCAK 139 (670)
Q Consensus 72 ~~~~~~~~A~~~~~~~~~----~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~------~pd~--~~~~~li~~~~~ 139 (670)
...|.+..+.++++.++. .+..........+...|++++|..++....+.-- .+.. .....+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 334566666666666531 1222223344455667888888888877654310 0111 112222334456
Q ss_pred cCCHHHHHh-------cCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-C--CHHHHHHHHHHHHHc
Q 005905 140 SGKVDAMFE-------NVK-PD----RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD-P--DHITIGALMKACANA 204 (670)
Q Consensus 140 ~g~~~~~~~-------~~~-~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~-p--d~~t~~~li~~~~~~ 204 (670)
.|+++.+.. ... .+ ....+.+...+...|++++|...+.+......... + ...++..+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 677665332 111 11 12345555667778888888888777654211111 1 122344455567778
Q ss_pred CCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCC--CHHHHHHHHHHHHh
Q 005905 205 GQVDRAREVYKMIHKY----NIK--G-TPEVYTIAINCCSQTGDWEFACSVYDDMTKKG--VIP--DEVFLSALIDFAGH 273 (670)
Q Consensus 205 g~~~~A~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p--~~~t~~~li~~~~~ 273 (670)
|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+..
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 8888888877665442 211 1 12234445556666788888888777764421 111 12334445556667
Q ss_pred cCChHHHHHHHHHHHHCC--CCccH---HH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhC
Q 005905 274 AGKVEAAFEILQEAKNQG--ISVGI---IS-YSSLMGACSNAKNWQKALELYEHMKSIKLKPT---VSTMNALITALCDG 344 (670)
Q Consensus 274 ~g~~~~A~~i~~~m~~~~--~~~~~---~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~ 344 (670)
.|+.+.|...+....... ..... .. ....+..+...|+.+.|...+........... ...+..+..++...
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 788888887777764321 11100 00 01122344557788888877766543211111 11134455667777
Q ss_pred CChhHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 345 DQLPKTMEVLSDMKS----LGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 345 g~~~~A~~l~~~m~~----~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 395 (670)
|++++|..++++... .|..++ ..+...+..++...|+.++|...+.+..+.
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888888888877654 233322 234445555677888888888888777764
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00023 Score=69.25 Aligned_cols=368 Identities=12% Similarity=0.057 Sum_probs=208.1
Q ss_pred hhHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCCC---------------
Q 005905 27 EQLHSYNRLI--RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--------------- 89 (670)
Q Consensus 27 ~~~~~~~~l~--~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------------- 89 (670)
..+..|-+.| +.|++++|+..+.-+.+.+-.|..-.++ +.-...-.|.+.+|..+-...+.
T Consensus 57 ~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vn--LAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahkl 134 (557)
T KOG3785|consen 57 DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVN--LACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKL 134 (557)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchh--HHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Confidence 4566676666 7899999999999987765322222222 22122234666666655443321
Q ss_pred CCHH---H-----------HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCHHHHHh------
Q 005905 90 PTLS---T-----------FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL-ITTCAKSGKVDAMFE------ 148 (670)
Q Consensus 90 ~~~~---~-----------y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l-i~~~~~~g~~~~~~~------ 148 (670)
.|.. + --+|.+.....-.+++|+.+|.+.+... |+-...|.- .-+|.+..-++-..+
T Consensus 135 ndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL 212 (557)
T KOG3785|consen 135 NDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYL 212 (557)
T ss_pred CcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 0110 1 1122223333345677888887777642 444444433 334455544443222
Q ss_pred -cCCCCHHHHHHHHHHHHh----------------cC-------------------CHHHHHHHHHHHhhCCCCCCCCHH
Q 005905 149 -NVKPDRVVFNALITACGQ----------------SG-------------------AVDRAFDVLAEMNAEVHPVDPDHI 192 (670)
Q Consensus 149 -~~~~~~~~~~~li~~~~~----------------~g-------------------~~~~A~~l~~~m~~~~~~~~pd~~ 192 (670)
.++.+...-|.......+ ++ .-+.|++++-.+.+ +-|.
T Consensus 213 ~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~----~IPE-- 286 (557)
T KOG3785|consen 213 RQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMK----HIPE-- 286 (557)
T ss_pred HhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHh----hChH--
Confidence 223333333333222221 11 12344444443332 2333
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHH
Q 005905 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN-----CCSQTGDWEFACSVYDDMTKKGVIPDEVF-LSA 266 (670)
Q Consensus 193 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~-----~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ 266 (670)
.-..++--|.+.+++.+|..+.+++.- ..|-......++. -........-|...|.-.-+.+..-|... -.+
T Consensus 287 ARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQs 364 (557)
T KOG3785|consen 287 ARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQS 364 (557)
T ss_pred hhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHH
Confidence 223455568899999999888777642 1222222222221 11122235567777766655554444322 223
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhCC
Q 005905 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA-LITALCDGD 345 (670)
Q Consensus 267 li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-li~~~~~~g 345 (670)
+.+++.-..++++.+.++..+..--..-|...+ .+..+++..|++.+|+++|-.+....++ |..+|-+ |..+|.+++
T Consensus 365 mAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nk 442 (557)
T KOG3785|consen 365 MASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNK 442 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcC
Confidence 444455556788888888877766545555555 4778999999999999999887654443 5666655 467889999
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005905 346 QLPKTMEVLSDMKSLGLCPNTITYSILL-VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413 (670)
Q Consensus 346 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r 413 (670)
+++-|.+++-.+.. +.+..+...+| +-|.+.+.+--|-+.|+++.... |+++-|..--.+|..
T Consensus 443 kP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD--P~pEnWeGKRGACaG 506 (557)
T KOG3785|consen 443 KPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEILD--PTPENWEGKRGACAG 506 (557)
T ss_pred CchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC--CCccccCCccchHHH
Confidence 99999888766643 33445544444 46899999999999998887754 666655544444444
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.39 E-value=7.6e-05 Score=72.83 Aligned_cols=187 Identities=9% Similarity=-0.032 Sum_probs=116.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 005905 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH----ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 226 (670)
Q Consensus 151 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~----~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 226 (670)
......+..+...|.+.|++++|...|+++... .|+. ..+..+..++...|++++|...|+.+.+.......
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 105 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESR----YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD 105 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence 456667778888889999999999999988764 3432 35667778888899999999999988875422111
Q ss_pred --HHHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccH
Q 005905 227 --EVYTIAINCCSQT--------GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296 (670)
Q Consensus 227 --~~~~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~ 296 (670)
.++..+..++.+. |++++|.+.|+.+.+.... +...+..+..... ... .. .
T Consensus 106 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~--------~ 166 (235)
T TIGR03302 106 ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RL--------A 166 (235)
T ss_pred hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HH--------H
Confidence 2444555555544 6677788888877766432 2222221111100 000 00 0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 005905 297 ISYSSLMGACSNAKNWQKALELYEHMKSIKL--KPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360 (670)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 360 (670)
.....+...|.+.|++++|...|+...+... +.....+..+..++...|++++|..+++.+...
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 0112445567777777777777777765421 113456777777777777777777777776653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00049 Score=69.63 Aligned_cols=215 Identities=10% Similarity=-0.012 Sum_probs=155.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHH-HHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005905 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI-TIGALMKACANAG-QVDRAREVYKMIHKYNIKGTPEVYTIA 232 (670)
Q Consensus 155 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~-t~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~l 232 (670)
.+++.+-..+...++.++|+.++.++... .|+.. .|+.-..++...| ++++++..++.+.+.+ +.+..+|+..
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~l----nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R 112 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRL----NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHR 112 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHH----CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHH
Confidence 35566667777788999999999999874 56544 4555555666667 6799999999998876 5566778866
Q ss_pred HHHHHhcCCH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc-
Q 005905 233 INCCSQTGDW--EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA- 309 (670)
Q Consensus 233 i~~~~~~g~~--~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~- 309 (670)
--.+.+.|+. ++++.+++++.+...+ |...|+...-++.+.|+++++++.+.++++.+ .-+..+|+.....+.+.
T Consensus 113 ~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~ 190 (320)
T PLN02789 113 RWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSP 190 (320)
T ss_pred HHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhcc
Confidence 6566666653 6788899999888765 78888888888888899999999999999887 44566777666555554
Q ss_pred --CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005905 310 --KNW----QKALELYEHMKSIKLKPTVSTMNALITALCDG----DQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378 (670)
Q Consensus 310 --g~~----~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 378 (670)
|.. +++.....++.... +-|...|+.+...+... +...+|.+.+.+....+ ..+......|++.|+.
T Consensus 191 ~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 191 LLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred ccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 222 45666666666654 34778888888888773 34466888888866532 3355666677777764
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00041 Score=78.73 Aligned_cols=223 Identities=12% Similarity=0.053 Sum_probs=147.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 005905 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-----HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227 (670)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd-----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 227 (670)
+...|-..|.-..+.++.++|.+++++.... +.+- .-.|.++++.-..-|.-+...++|+++.+.. ....
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t---IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~ 1531 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT---INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYT 1531 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh---CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHH
Confidence 4566777777777788888888888877653 3221 2346666666666677777777887776643 1235
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-ccHHHHHHHHHHH
Q 005905 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS-VGIISYSSLMGAC 306 (670)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~-~~~~~~~~li~~~ 306 (670)
+|..|...|.+.+.+++|.++|+.|.+.-- -....|...++.+.+..+-+.|..++.+..+.-.+ -.+....-.+..-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 677788888888888888888888876422 25567777777777777777788877777654211 1234445555666
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCH
Q 005905 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT--ITYSILLVACERKDDV 382 (670)
Q Consensus 307 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~ 382 (670)
.++|+.+.++.+|+...... +.-...|+..|..-.++|+.+.+..+|++....++.|-. ..|...|..=...|+-
T Consensus 1611 Fk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence 67788888888888776554 235667888888888888888888888888777666643 3344444443344443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=5e-05 Score=78.72 Aligned_cols=223 Identities=13% Similarity=0.070 Sum_probs=167.9
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 005905 162 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 241 (670)
Q Consensus 162 ~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 241 (670)
.-+.+.|++.+|.-.|+..+++. +-+...|.-|.......++-..|+..+.+..+.+ +.|..+.-+|.-.|...|.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd---P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD---PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC---hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhh
Confidence 34678999999999999998862 3346678888888899999999999999999887 6678888889999999999
Q ss_pred HHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCChHHHHHHHHHHH-HCCCCccHHHHHHHHHHHHhcCCH
Q 005905 242 WEFACSVYDDMTKKGVI--------PDEVFLSALIDFAGHAGKVEAAFEILQEAK-NQGISVGIISYSSLMGACSNAKNW 312 (670)
Q Consensus 242 ~~~A~~l~~~m~~~g~~--------p~~~t~~~li~~~~~~g~~~~A~~i~~~m~-~~~~~~~~~~~~~li~~~~~~g~~ 312 (670)
-..|+..++.-+...++ ++..+-.. ........+.+..++|-++. ..+..+|..++..|.-.|--.|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 99999999887654321 00000000 01111122334445555544 445458888889999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHH
Q 005905 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI-TYSILLVACERKDDVEVGLMLLSQ 391 (670)
Q Consensus 313 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~ 391 (670)
++|.+.|+......+ -|...||-|-..++...+.++|+..|++..+ ++|+-+ ....|.-+|...|.+++|.+.|=.
T Consensus 447 draiDcf~~AL~v~P-nd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 447 DRAVDCFEAALQVKP-NDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHHhcCC-chHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 999999999887753 3788999999999999999999999999988 578743 333455678999999999988855
Q ss_pred HH
Q 005905 392 AK 393 (670)
Q Consensus 392 m~ 393 (670)
.+
T Consensus 524 AL 525 (579)
T KOG1125|consen 524 AL 525 (579)
T ss_pred HH
Confidence 44
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0014 Score=62.62 Aligned_cols=283 Identities=15% Similarity=0.129 Sum_probs=182.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC--CCCHHHHHHH-HHHHHcC
Q 005905 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNML-MSVCASS 105 (670)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~y~~l-i~~~~~~ 105 (670)
..+.-.|++..++++|++++..-.++. |.+..-...+.-.+....++..|-..++.+. .|...-|..- ...+.+.
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 344557899999999999999988877 6666666666666667788999999888775 3554444332 3556677
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CCHHH---HHhcC--CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005905 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS--GKVDA---MFENV--KPDRVVFNALITACGQSGAVDRAFDVLA 178 (670)
Q Consensus 106 g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~--g~~~~---~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~ 178 (670)
+.+..|+++...|.+. |+...-..-+.+..+- +++.. ..+.. +-+..+.+.......+.|+++.|++-|+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 8888999988877653 2222211112222221 22211 22222 2344455555555668899999999999
Q ss_pred HHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----------------------------HHHH
Q 005905 179 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP----------------------------EVYT 230 (670)
Q Consensus 179 ~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----------------------------~~~~ 230 (670)
...+- .|..|- ..|+..+ +..+.|+++.|++...++.++|++..+ ..+|
T Consensus 169 aAlqv-sGyqpl-lAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfN 245 (459)
T KOG4340|consen 169 AALQV-SGYQPL-LAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFN 245 (459)
T ss_pred HHHhh-cCCCch-hHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhh
Confidence 98876 366663 5666555 445678999999999999887753211 1233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc
Q 005905 231 IAINCCSQTGDWEFACSVYDDMTKK-GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309 (670)
Q Consensus 231 ~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~ 309 (670)
.-...+.+.|+++.|.+-+-.|.-+ .-..|.+|...+.-. -..+++....+-+..+...+ +....||..++-.||+.
T Consensus 246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKN 323 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKN 323 (459)
T ss_pred hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhh
Confidence 3334456778888888888777432 233466666554321 12345666666666666665 34567888888888888
Q ss_pred CCHHHHHHHHHH
Q 005905 310 KNWQKALELYEH 321 (670)
Q Consensus 310 g~~~~A~~~~~~ 321 (670)
.-++.|-.++.+
T Consensus 324 eyf~lAADvLAE 335 (459)
T KOG4340|consen 324 EYFDLAADVLAE 335 (459)
T ss_pred HHHhHHHHHHhh
Confidence 888888888765
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0043 Score=73.54 Aligned_cols=291 Identities=9% Similarity=-0.026 Sum_probs=169.3
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHh-------cCC-------CCH--HHHHHHHHHHH
Q 005905 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-------NVK-------PDR--VVFNALITACG 165 (670)
Q Consensus 102 ~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~-------~~~-------~~~--~~~~~li~~~~ 165 (670)
....|++..+...++.+.......+..........+...|+++++.. ... +.. .....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 44456666666665544211111122222333444556677765432 111 111 11222334566
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHH
Q 005905 166 QSGAVDRAFDVLAEMNAEVHPVDPDH----ITIGALMKACANAGQVDRAREVYKMIHKYNI---KGT--PEVYTIAINCC 236 (670)
Q Consensus 166 ~~g~~~~A~~l~~~m~~~~~~~~pd~----~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~--~~~~~~li~~~ 236 (670)
..|++++|...+++..... . ..+. ...+.+...+...|++++|...+.+.....- .+. ..++..+...+
T Consensus 464 ~~g~~~~A~~~~~~al~~~-~-~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 464 NDGDPEEAERLAELALAEL-P-LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred hCCCHHHHHHHHHHHHhcC-C-CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 7899999999998876531 1 1121 2344555667789999999999887764311 111 23445566778
Q ss_pred HhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCccHHHHHHHHHH
Q 005905 237 SQTGDWEFACSVYDDMTKK----GVI--P-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GISVGIISYSSLMGA 305 (670)
Q Consensus 237 ~~~g~~~~A~~l~~~m~~~----g~~--p-~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~----~~~~~~~~~~~li~~ 305 (670)
...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+.... +.......+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 8899999999988876542 211 1 2233445555677789999999888877543 111123445556677
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCC-CCHHHH-----HHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH---HHHHHHHHHH
Q 005905 306 CSNAKNWQKALELYEHMKSIKLK-PTVSTM-----NALITALCDGDQLPKTMEVLSDMKSLGLCPNT---ITYSILLVAC 376 (670)
Q Consensus 306 ~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~-----~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~ll~a~ 376 (670)
+...|+++.|.+.++........ .....+ ...+..+...|+.+.|.+.+............ ..+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 88899999999988877532101 111111 11224455688899999888775542211111 1134555677
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 005905 377 ERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 377 ~~~g~~~~a~~~~~~m~~ 394 (670)
...|+.++|...+.....
T Consensus 702 ~~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 702 ILLGQFDEAEIILEELNE 719 (903)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 888999999999988765
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0054 Score=64.19 Aligned_cols=145 Identities=15% Similarity=0.083 Sum_probs=100.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH--------HHHHCCCCccHHHHHHHHHHHHhcCCH
Q 005905 241 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ--------EAKNQGISVGIISYSSLMGACSNAKNW 312 (670)
Q Consensus 241 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~--------~m~~~~~~~~~~~~~~li~~~~~~g~~ 312 (670)
.+..+.+++...-+....-...+.-.+++.....|+++.|.+++. .+.+.+..|. +..++...|.+.++-
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCC
Confidence 456677777666655433234566677788889999999999999 5555555554 445678888888888
Q ss_pred HHHHHHHHHHHhC--CCCCCHHHHHHHH----HHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005905 313 QKALELYEHMKSI--KLKPTVSTMNALI----TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386 (670)
Q Consensus 313 ~~A~~~~~~m~~~--~~~p~~~~~~~li----~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 386 (670)
+.|..++.+.... .-.+.....++++ .--.++|+.++|..+++++.+. .++|..+...++.+|++. +++.|.
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAE 511 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHH
Confidence 8888888765431 0012223333333 3344789999999999999985 378889999999998865 456666
Q ss_pred HHH
Q 005905 387 MLL 389 (670)
Q Consensus 387 ~~~ 389 (670)
.+-
T Consensus 512 ~l~ 514 (652)
T KOG2376|consen 512 SLS 514 (652)
T ss_pred HHh
Confidence 544
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.016 Score=62.59 Aligned_cols=333 Identities=14% Similarity=0.026 Sum_probs=200.1
Q ss_pred CchHHHHHHHHHHHhhhhhHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 005905 58 DMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA-DCKLYTTL 133 (670)
Q Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~l 133 (670)
.++..++..+.-+....|++..+.+.|+... -.....|+.+-..+...|.-..|..+++.-....-.| |...+-..
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 3566666666666677899999999998753 2445678888888888898888998887755432223 34444444
Q ss_pred HHHHHhc-CCHHHHHh----------c--CCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHhhCCCCCCC
Q 005905 134 ITTCAKS-GKVDAMFE----------N--VKPDRVVFNALITACGQS-----------GAVDRAFDVLAEMNAEVHPVDP 189 (670)
Q Consensus 134 i~~~~~~-g~~~~~~~----------~--~~~~~~~~~~li~~~~~~-----------g~~~~A~~l~~~m~~~~~~~~p 189 (670)
-..|.+. +.+++..+ + -......|-.+.-+|... ....++++.+++..+.+ +-.|
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp 478 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDP 478 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCc
Confidence 4444433 33433222 0 012333444444444432 12457777888877653 4456
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CC-----------
Q 005905 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK-GV----------- 257 (670)
Q Consensus 190 d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~----------- 257 (670)
+...|.++ -|+-.++++.|.+..++..+.+-..+...|..+.-.+.-.+++.+|+.+.+..... |.
T Consensus 479 ~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 479 LVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI 556 (799)
T ss_pred hHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence 55555443 45667788888888888888765677788888888888888888888887765433 11
Q ss_pred -------CCCHHHHHHHHHHHHh---------c--------------CChHHHHHHHHHH--------HHCC--------
Q 005905 258 -------IPDEVFLSALIDFAGH---------A--------------GKVEAAFEILQEA--------KNQG-------- 291 (670)
Q Consensus 258 -------~p~~~t~~~li~~~~~---------~--------------g~~~~A~~i~~~m--------~~~~-------- 291 (670)
..-..|...++..+-. . ++..++.+..+++ ...+
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s 636 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSS 636 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcc
Confidence 0001122233322220 0 0111111111111 0011
Q ss_pred -C--Ccc------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 005905 292 -I--SVG------IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362 (670)
Q Consensus 292 -~--~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 362 (670)
. .|+ ...|......+.+.++.++|...+.+..... .-....|......+...|..++|.+.|..... +
T Consensus 637 ~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--l 713 (799)
T KOG4162|consen 637 TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--L 713 (799)
T ss_pred cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--c
Confidence 0 112 3456667777888888888887777766543 23455666666677788888888888887765 4
Q ss_pred CCCH-HHHHHHHHHHHhcCCHHHHHH--HHHHHHHCC
Q 005905 363 CPNT-ITYSILLVACERKDDVEVGLM--LLSQAKEDG 396 (670)
Q Consensus 363 ~p~~-~t~~~ll~a~~~~g~~~~a~~--~~~~m~~~g 396 (670)
.|+. ...+++...+.+.|+...+.. ++..+.+.+
T Consensus 714 dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d 750 (799)
T KOG4162|consen 714 DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD 750 (799)
T ss_pred CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC
Confidence 5654 456677777788887777766 777777755
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00013 Score=77.57 Aligned_cols=234 Identities=11% Similarity=0.078 Sum_probs=180.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005905 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 235 (670)
Q Consensus 156 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 235 (670)
.--.+...+...|-..+|+.+|++.. .|..+|.+|+..|+..+|..+.....+ -+|++..|..+.++
T Consensus 400 ~q~~laell~slGitksAl~I~Erle-----------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE-----------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH-----------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 33456677888999999999998874 466788899999999999999887776 37888999999998
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHH
Q 005905 236 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315 (670)
Q Consensus 236 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 315 (670)
.....-+++|.++++....+ .-..+.....+.++++++.+.++.-.+.+ +....+|-.+..+..++++++.|
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHH
Confidence 88888889999998875433 11122222234788999999999877765 55677888888889999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 316 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 395 (670)
.+.|..-.... +-+...||.+-.+|.+.|+-.+|...+.+..+.. .-+...|-..+-...+.|.+++|++.+.++.+.
T Consensus 539 v~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 539 VKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 99999887664 3367889999999999999999999999998865 344445555555667899999999999888763
Q ss_pred C-CCCCHHHHHHHHHHHH
Q 005905 396 G-VIPNLVMFKCIIGMCS 412 (670)
Q Consensus 396 g-~~p~~~~~~~li~~~~ 412 (670)
. ...|..+..-++....
T Consensus 617 ~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 617 RKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred hhhcccchhhHHHHHHHH
Confidence 1 1236666666665543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0019 Score=65.44 Aligned_cols=207 Identities=11% Similarity=0.079 Sum_probs=150.5
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--h
Q 005905 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG-DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK--V 277 (670)
Q Consensus 201 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~--~ 277 (670)
+...++.++|+.++.++.+.+ +.+..+|+.--.++...| ++++++..++++.+...+ +..+|..---.+.+.|. .
T Consensus 47 l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhh
Confidence 344578889999999998876 556678887777777777 689999999999988765 55556655444555665 3
Q ss_pred HHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC---CCh----hHH
Q 005905 278 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG---DQL----PKT 350 (670)
Q Consensus 278 ~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~----~~A 350 (670)
+.++.+++.+.+.. +-+..+|+....++.+.|+++++.+.++++.+.++. |...|+.....+.+. |.. +++
T Consensus 125 ~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 125 NKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHH
Confidence 67888998998876 567889999999999999999999999999988744 777888777666554 223 467
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005905 351 MEVLSDMKSLGLCPNTITYSILLVACERK----DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413 (670)
Q Consensus 351 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~----g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r 413 (670)
++...++... .+-|...|+.+...+... +...+|..++.+..+.+ ..+......|++.|+.
T Consensus 203 l~y~~~aI~~-~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 203 LKYTIDAILA-NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHh-CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 7777676664 133556676666666652 34566888888776643 2345567778888765
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00045 Score=64.98 Aligned_cols=115 Identities=10% Similarity=0.075 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHH-HHhcCC--HHHHHHH
Q 005905 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA-CSNAKN--WQKALEL 318 (670)
Q Consensus 242 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~-~~~~g~--~~~A~~~ 318 (670)
.+++...++...+.... |...|..+...|...|++++|...|+...+.. +.+..++..+..+ |...|+ .++|.++
T Consensus 55 ~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~ 132 (198)
T PRK10370 55 PEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREM 132 (198)
T ss_pred HHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 33343334433333322 34444444444444444444444444444433 2233333333333 233333 2444444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 319 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
+++..+.+.. +...+..+...+.+.|++++|+..|+++.+
T Consensus 133 l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 133 IDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444443321 334444444444444444444444444443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00051 Score=73.80 Aligned_cols=239 Identities=15% Similarity=0.209 Sum_probs=142.1
Q ss_pred CHHHHHHHHH--HHHhcCCHHHHHhcC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--------CCCCHHH
Q 005905 126 DCKLYTTLIT--TCAKSGKVDAMFENV--KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP--------VDPDHIT 193 (670)
Q Consensus 126 d~~~~~~li~--~~~~~g~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~--------~~pd~~t 193 (670)
|..|-..+++ .|...|+.|.+|..+ -.+..+|..|.+.|.+..+.+-|.-.+-.|... .| -.|+ .+
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~a-RgaRAlR~a~q~~~-e~ 802 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNA-RGARALRRAQQNGE-ED 802 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhhhHHHHHHHHHhhhhccccHHHHhhhhhhhh-hhHHHHHHHHhCCc-ch
Confidence 4444444443 244456666666543 245555666666666665555555554444321 00 0121 11
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005905 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273 (670)
Q Consensus 194 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~ 273 (670)
=.-+.-.....|.+++|..+|.+.++.+ .|=..|...|.|++|.++-+.=-...+ ..||.....-+..
T Consensus 803 eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 803 EAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEA 870 (1416)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHh
Confidence 1111222346677888888887776643 344556667888888877654322222 2345444444555
Q ss_pred cCChHHHHHHHHHH----------HHCC---------CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 005905 274 AGKVEAAFEILQEA----------KNQG---------ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334 (670)
Q Consensus 274 ~g~~~~A~~i~~~m----------~~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 334 (670)
.++.+.|++.|+.. .... -..|...|..-.......|+++.|+.+|...+ -|
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~---------D~ 941 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK---------DY 941 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh---------hh
Confidence 56666666655432 1111 12345666667777778899999999988776 26
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005905 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393 (670)
Q Consensus 335 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 393 (670)
-+++...|-.|+.++|-++-++ .-|......+.+.|...|++.+|..+|-+..
T Consensus 942 fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 942 FSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 6778888888999998887765 2355556677888888999999998887654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00066 Score=63.86 Aligned_cols=156 Identities=13% Similarity=0.121 Sum_probs=111.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 005905 161 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 240 (670)
Q Consensus 161 i~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 240 (670)
+..|...|+++.+..-.+.+.. |. . .+...++.+++...++...+.+ +.+...|..+...|...|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~------~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD------PL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC------cc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCC
Confidence 3567777777776444433321 11 0 1122566677777777777766 677888888888899999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCC--hHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 005905 241 DWEFACSVYDDMTKKGVIPDEVFLSALIDF-AGHAGK--VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317 (670)
Q Consensus 241 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~~-~~~~g~--~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 317 (670)
++++|...|++..+.... +...+..+..+ +...|+ .++|.+++++..+.+ +.+..++..+...+.+.|++++|..
T Consensus 88 ~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 88 DYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHH
Confidence 999999999888887654 66777777765 356666 488999999988876 5567788888888889999999999
Q ss_pred HHHHHHhCCCCCCHHHH
Q 005905 318 LYEHMKSIKLKPTVSTM 334 (670)
Q Consensus 318 ~~~~m~~~~~~p~~~~~ 334 (670)
.|+++.+.. +|+..-+
T Consensus 166 ~~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 166 LWQKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHHHHhhC-CCCccHH
Confidence 999887765 3444333
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00056 Score=77.72 Aligned_cols=210 Identities=13% Similarity=0.051 Sum_probs=169.2
Q ss_pred CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 005905 188 DPD-HITIGALMKACANAGQVDRAREVYKMIHKY-NIKG---TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262 (670)
Q Consensus 188 ~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 262 (670)
.|| ...|...|......++.+.|++++++.... ++.- -..+|.++++.-..-|.-+...++|++..+..- .-.
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd--~~~ 1531 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD--AYT 1531 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc--hHH
Confidence 344 567888888899999999999999888663 2211 235788888888888888999999999987631 245
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHH
Q 005905 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK-PTVSTMNALITAL 341 (670)
Q Consensus 263 t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~ 341 (670)
.|..|...|.+.+..++|-++++.|.++- .-...+|...++.+.+..+-+.|..++.+..+.=++ -.+....-.+..-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 78899999999999999999999998763 356789999999999999999999999987765222 1233444556666
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 005905 342 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 401 (670)
Q Consensus 342 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~ 401 (670)
.++|+.+++..+|+..... .+--...|+.+++.-.++|+.+.+..+|++.+..++.|..
T Consensus 1611 Fk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred hhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 7899999999999999875 3445678999999999999999999999999998877653
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0005 Score=71.53 Aligned_cols=219 Identities=16% Similarity=0.127 Sum_probs=130.7
Q ss_pred cCCCchhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhC---CCCCHHHHHH
Q 005905 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNM 97 (670)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~y~~ 97 (670)
+.-.+.|+..-. .|+++|++.+|.-+|+.....+ |.+...-..+.......++=..|+..+++. .+.|....-.
T Consensus 282 ~~~~pdPf~eG~-~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLma 358 (579)
T KOG1125|consen 282 YIDHPDPFKEGC-NLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMA 358 (579)
T ss_pred ccCCCChHHHHH-HHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHH
Confidence 333445555544 4567888999999999998887 666655555555555555555566665543 4556777778
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCC-------------------CCHHHHHHHHHHHHhcCCHHHHHh-cCCCCHHHH
Q 005905 98 LMSVCASSKDSEGAFQVLRLVQEAGLK-------------------ADCKLYTTLITTCAKSGKVDAMFE-NVKPDRVVF 157 (670)
Q Consensus 98 li~~~~~~g~~~~A~~~~~~m~~~g~~-------------------pd~~~~~~li~~~~~~g~~~~~~~-~~~~~~~~~ 157 (670)
|.-.|...|.-..|+..++.-+....+ ++...+.-+-..|. +.+.+ ...+|..+.
T Consensus 359 LAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fL-----eaa~~~~~~~DpdvQ 433 (579)
T KOG1125|consen 359 LAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFL-----EAARQLPTKIDPDVQ 433 (579)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHH-----HHHHhCCCCCChhHH
Confidence 888888888888888888777654211 11111211111111 11111 123556666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005905 158 NALITACGQSGAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 236 (670)
Q Consensus 158 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p-d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 236 (670)
+.|.-.|--.|++++|++.|+..... +| |...||-|...++...+.++|+.-|.+.++.. +.-+.++.-|.-.|
T Consensus 434 ~~LGVLy~ls~efdraiDcf~~AL~v----~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq-P~yVR~RyNlgIS~ 508 (579)
T KOG1125|consen 434 SGLGVLYNLSGEFDRAVDCFEAALQV----KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ-PGYVRVRYNLGISC 508 (579)
T ss_pred hhhHHHHhcchHHHHHHHHHHHHHhc----CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC-CCeeeeehhhhhhh
Confidence 66666666677777777777766653 34 34566666666777677777777777666543 11223333344456
Q ss_pred HhcCCHHHHHHHHHHH
Q 005905 237 SQTGDWEFACSVYDDM 252 (670)
Q Consensus 237 ~~~g~~~~A~~l~~~m 252 (670)
...|.+++|.+.|-..
T Consensus 509 mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 509 MNLGAYKEAVKHLLEA 524 (579)
T ss_pred hhhhhHHHHHHHHHHH
Confidence 6667777766666443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0013 Score=70.62 Aligned_cols=81 Identities=14% Similarity=0.166 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhC----CCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 005905 39 GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----PNPTLSTFNMLMSVCASSKDSEGAFQV 114 (670)
Q Consensus 39 g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~y~~li~~~~~~g~~~~A~~~ 114 (670)
....++++.+++..+.+...+...++ +.-.++..++++.|.+..++. ..-+...|..+.-.+...+++.+|+.+
T Consensus 458 ~~h~kslqale~av~~d~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~v 535 (799)
T KOG4162|consen 458 ALHKKSLQALEEAVQFDPTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDV 535 (799)
T ss_pred HHHHHHHHHHHHHHhcCCCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHH
Confidence 35567899999999888433333333 334456678888888776543 456788999999999999999999999
Q ss_pred HHHHHHc
Q 005905 115 LRLVQEA 121 (670)
Q Consensus 115 ~~~m~~~ 121 (670)
.+.....
T Consensus 536 vd~al~E 542 (799)
T KOG4162|consen 536 VDAALEE 542 (799)
T ss_pred HHHHHHH
Confidence 8876653
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00058 Score=66.59 Aligned_cols=187 Identities=9% Similarity=-0.042 Sum_probs=121.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HH
Q 005905 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP---EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE--VF 263 (670)
Q Consensus 189 pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t 263 (670)
.....+..+...+...|+++.|...|+++.... +.+. .++..+..+|.+.|++++|...|+++.+....... .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345567777788888999999999998887754 3222 46677788888899999999999988876442222 13
Q ss_pred HHHHHHHHHhc--------CChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 005905 264 LSALIDFAGHA--------GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 335 (670)
Q Consensus 264 ~~~li~~~~~~--------g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 335 (670)
+..+..++... |+.++|.+.++.+.+.. +-+...+..+..... .. .... ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~------~~~~--------~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LR------NRLA--------GKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HH------HHHH--------HHHH
Confidence 33444444443 56777777777776653 212222221111100 00 0000 0112
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 336 ALITALCDGDQLPKTMEVLSDMKSLGL-CP-NTITYSILLVACERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 336 ~li~~~~~~g~~~~A~~l~~~m~~~g~-~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 395 (670)
.+...|.+.|++.+|+..|++....-- .| ....+..+..++.+.|+.++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455678899999999999999887411 12 3567888899999999999999999887654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.002 Score=69.44 Aligned_cols=248 Identities=16% Similarity=0.199 Sum_probs=147.3
Q ss_pred CHHHHHHHH--HHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHh----------------c-CC
Q 005905 91 TLSTFNMLM--SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE----------------N-VK 151 (670)
Q Consensus 91 ~~~~y~~li--~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~----------------~-~~ 151 (670)
|..|-..++ +.|...|+.+.|.+-.+.++ +..+|..|.++|.+..++|-+.- . -.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 444444444 23455566665555444332 23456666666666555442110 0 11
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 005905 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231 (670)
Q Consensus 152 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 231 (670)
++ ..-.-+.......|.+++|..+|.+-++ |..|=+.|-..|.+++|.++-+.--+..+ ..||..
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-----------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~ 863 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR-----------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYN 863 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHH
Confidence 21 1111222233466778888888877654 22334456667788888776543222222 245555
Q ss_pred HHHHHHhcCCHHHHHHHHHHH----------HHCC---------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 005905 232 AINCCSQTGDWEFACSVYDDM----------TKKG---------VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292 (670)
Q Consensus 232 li~~~~~~g~~~~A~~l~~~m----------~~~g---------~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~ 292 (670)
-...+-..+|.+.|++.|++. +... -..|...|.--.......|+.+.|+.+|....+
T Consensus 864 yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--- 940 (1416)
T KOG3617|consen 864 YAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--- 940 (1416)
T ss_pred HHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---
Confidence 555555566666666666532 1111 112445555555666677899999988887654
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 005905 293 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372 (670)
Q Consensus 293 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 372 (670)
|-+++...|-.|+.++|-++-++- .|....-.|...|-..|++.+|..+|.+.+ +|...
T Consensus 941 ------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnA 999 (1416)
T KOG3617|consen 941 ------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNA 999 (1416)
T ss_pred ------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHH
Confidence 457888888999999999887753 366677788999999999999999998764 45566
Q ss_pred HHHHHhcCCHH
Q 005905 373 LVACERKDDVE 383 (670)
Q Consensus 373 l~a~~~~g~~~ 383 (670)
|+.|...+.-+
T Consensus 1000 IRlcKEnd~~d 1010 (1416)
T KOG3617|consen 1000 IRLCKENDMKD 1010 (1416)
T ss_pred HHHHHhcCHHH
Confidence 66665444433
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00051 Score=73.31 Aligned_cols=220 Identities=12% Similarity=-0.014 Sum_probs=132.8
Q ss_pred CchHHHHHHHHHHHhhhhhHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005905 58 DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137 (670)
Q Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~ 137 (670)
|+.-.....+..++.+.|-...|+.+|++. ..|.-+|-.|...|+..+|..+..+-++ -+||...|..+.+..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence 444445556666777777888888887763 4566777777777877777777766666 357777777766655
Q ss_pred HhcCCHHHHHhc-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005905 138 AKSGKVDAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 216 (670)
Q Consensus 138 ~~~g~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~ 216 (670)
....-++++.+- -..+...-..+.....++++++++.+.|+.-.+.. + -...+|-....+..++++++.|.+.|..
T Consensus 468 ~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n-p--lq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEIN-P--LQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred cChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcC-c--cchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 444444444431 11111111111122223566777777776655542 1 2234666666666677777777777766
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005905 217 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289 (670)
Q Consensus 217 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~ 289 (670)
..... +.+...||.+-.+|.+.++-.+|...+.+..+.+.. +...|...+....+.|.+++|++.+.++..
T Consensus 545 cvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 545 CVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 66543 445566777777777777777777777777666633 444555555556667777777776666643
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0027 Score=59.98 Aligned_cols=119 Identities=15% Similarity=0.081 Sum_probs=55.5
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 005905 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346 (670)
Q Consensus 271 ~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 346 (670)
..+..+.+-|.+.++.|.+-. +..|.+.|..++.+ .+.+.+|.-+|++|.+. ..|+..+.|-+..++...|+
T Consensus 147 ~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 344445555555555554432 22333333333322 23455555555555432 24555555555555555566
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH
Q 005905 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV-GLMLLSQAKE 394 (670)
Q Consensus 347 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~-a~~~~~~m~~ 394 (670)
+++|..++++..... .-+..|...++.+-.+.|...+ ..+.+.+++.
T Consensus 223 ~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 223 YEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 666666555555431 2234444444444444444322 2334444443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0033 Score=66.95 Aligned_cols=109 Identities=19% Similarity=0.325 Sum_probs=69.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCH
Q 005905 233 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312 (670)
Q Consensus 233 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 312 (670)
|.+-.....|.+|+.+++.+..... -..-|..+.+-|+..|+++.|.++|-+. ..++-.|.||.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 3444556677778887777776643 2335667777888888888888877643 2345677788888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHH
Q 005905 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 354 (670)
Q Consensus 313 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~ 354 (670)
+.|.++-++.. |.......|-+-..-+-.+|++.+|.+++
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 88877766543 22334444544444455566666655554
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.5e-06 Score=53.05 Aligned_cols=33 Identities=30% Similarity=0.665 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC
Q 005905 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365 (670)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 365 (670)
+||+||.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 677777777777777777777777777777776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0014 Score=73.95 Aligned_cols=130 Identities=14% Similarity=0.082 Sum_probs=67.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHH-HHHHHHHHHHcCCHHHHHHH-----------------
Q 005905 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT-IGALMKACANAGQVDRAREV----------------- 213 (670)
Q Consensus 152 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t-~~~li~~~~~~g~~~~A~~~----------------- 213 (670)
.+...|..|+..|...+++++|.++.+...+. .|+... |-.+...+...++++++..+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~----~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~ 104 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE----HKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEH 104 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHH
Confidence 35667778888888888888888888766553 444332 22222244455554444333
Q ss_pred -HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005905 214 -YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289 (670)
Q Consensus 214 -~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~ 289 (670)
+..|... ..+..++-.+..+|-+.|+.++|..+++++++.... |....+.+...|+.. ++++|.+++.....
T Consensus 105 ~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 105 ICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred HHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 1111111 111233444555555555555555555555555422 455555555555555 55555555554433
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0014 Score=69.63 Aligned_cols=137 Identities=18% Similarity=0.239 Sum_probs=93.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 005905 161 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 240 (670)
Q Consensus 161 i~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 240 (670)
|.+......+.+|+.+++.++.. ..-..-|..+...|+..|+++.|.++|-+. ..++-.|.+|.+.|
T Consensus 739 ieaai~akew~kai~ildniqdq----k~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQ----KTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAG 805 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhh----ccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccc
Confidence 44556677889999999888764 223345777888899999999999998653 23566788999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005905 241 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320 (670)
Q Consensus 241 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 320 (670)
+|+.|.++-.+. .|.......|.+-..-.-..|++.+|.++|-.+ | .|+ ..|.||-+.|..+...++.+
T Consensus 806 kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti---~-~p~-----~aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 806 KWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITI---G-EPD-----KAIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred cHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEc---c-Cch-----HHHHHHHhhCcchHHHHHHH
Confidence 999998887654 344444555655555566777777777766433 1 232 34566777777776666655
Q ss_pred H
Q 005905 321 H 321 (670)
Q Consensus 321 ~ 321 (670)
+
T Consensus 875 k 875 (1636)
T KOG3616|consen 875 K 875 (1636)
T ss_pred H
Confidence 4
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.007 Score=62.15 Aligned_cols=157 Identities=13% Similarity=0.088 Sum_probs=94.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHH
Q 005905 235 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314 (670)
Q Consensus 235 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 314 (670)
.+...|++++|+..++.+...-.. |...+....+.+...++..+|.+.++.+.... +......-.+..+|.+.|+..+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHH
Confidence 344566677777777776655322 44555555666677777777777777766653 1224455566667777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 315 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 394 (670)
|..+++...... +-|...|..|..+|...|+..+|..-.-+ ++...|+++.|...+....+
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHH
Confidence 777776665443 33666777777777777776666554433 34456777777777766665
Q ss_pred C--CCCCCHHHHHHHHHHHH
Q 005905 395 D--GVIPNLVMFKCIIGMCS 412 (670)
Q Consensus 395 ~--g~~p~~~~~~~li~~~~ 412 (670)
. ...|+-.-+...|+...
T Consensus 454 ~~~~~~~~~aR~dari~~~~ 473 (484)
T COG4783 454 QVKLGFPDWARADARIDQLR 473 (484)
T ss_pred hccCCcHHHHHHHHHHHHHH
Confidence 3 22355555555555443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.018 Score=59.74 Aligned_cols=362 Identities=15% Similarity=0.136 Sum_probs=210.2
Q ss_pred HHhhhhhHHHHHHHhhhC---CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHH
Q 005905 70 VCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC-KLYTTLITTCAKSGKVDA 145 (670)
Q Consensus 70 ~~~~~~~~~~A~~~~~~~---~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~~~~~li~~~~~~g~~~~ 145 (670)
+....|+++.|+..|... .++|.+.|..=..+|++.|++++|++=-.+-.+ +.|+- .-|+-+-.++.-.|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHH
Confidence 345678888888888643 356778888888888888988888775555444 45663 457777777777888887
Q ss_pred HHh----cC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHH--HhhCCCCCCCCH--------HHHHHHHHHHH------
Q 005905 146 MFE----NV---KPDRVVFNALITACGQSGAVDRAFDVLAE--MNAEVHPVDPDH--------ITIGALMKACA------ 202 (670)
Q Consensus 146 ~~~----~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~--m~~~~~~~~pd~--------~t~~~li~~~~------ 202 (670)
++. |+ +.|...++-+..++.... ++.+.|.. |.. ++..+. ..|..++..+-
T Consensus 89 A~~ay~~GL~~d~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~---~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 89 AILAYSEGLEKDPSNKQLKTGLAQAYLEDY---AADQLFTKPYFHE---KLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred HHHHHHHHhhcCCchHHHHHhHHHhhhHHH---HhhhhccCcHHHH---HhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 665 22 335666777777762110 00111100 000 000000 11222222211
Q ss_pred ----HcCCHHHHHHHHHHH-----HHcC-------CCC------------C----------HHHHHHHHHHHHhcCCHHH
Q 005905 203 ----NAGQVDRAREVYKMI-----HKYN-------IKG------------T----------PEVYTIAINCCSQTGDWEF 244 (670)
Q Consensus 203 ----~~g~~~~A~~~~~~m-----~~~~-------~~~------------~----------~~~~~~li~~~~~~g~~~~ 244 (670)
.-.++..|.-.+... ...+ ..| + ..-...+.++..+..++..
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 100111111111100 0000 011 0 0124557777788889999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHH-------HHHHHHHHhcCCHHHHHH
Q 005905 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY-------SSLMGACSNAKNWQKALE 317 (670)
Q Consensus 245 A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~-------~~li~~~~~~g~~~~A~~ 317 (670)
|.+-+....+.. -+..-++..-.+|...|.+.+....-....+.|-. ...-| ..+..+|.+.++++.|..
T Consensus 243 a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~ 319 (539)
T KOG0548|consen 243 AIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIK 319 (539)
T ss_pred HHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHH
Confidence 999999988776 35566677777888888887777766666665521 12222 223446777788999999
Q ss_pred HHHHHHhCCCCCCHHHH-------------------------HHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 005905 318 LYEHMKSIKLKPTVSTM-------------------------NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372 (670)
Q Consensus 318 ~~~~m~~~~~~p~~~~~-------------------------~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 372 (670)
.|.+.....-.|+..+= -.=...+.+.|++..|+..|.+++... +-|...|...
T Consensus 320 ~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNR 398 (539)
T KOG0548|consen 320 YYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNR 398 (539)
T ss_pred HHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHH
Confidence 99886654333332221 111345678999999999999999864 4567889898
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHH--HHHHHHHHhhHHHHHHhHHHhhhhcCCCccchhhhHHHHHHHHHH
Q 005905 373 LVACERKDDVEVGLMLLSQAKEDGVIPNL-VMF--KCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYRE 449 (670)
Q Consensus 373 l~a~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~--~~li~~~~r~~~~a~~l~~a~~~~~~~~~~~~~~~~~~A~~~~~~ 449 (670)
.-+|.+.|.+..|+.-.+..++.. |+- ..| ...+--..++|++|.+....-...++. ..+++.-|++
T Consensus 399 Aac~~kL~~~~~aL~Da~~~ieL~--p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~--------~~e~~~~~~r 468 (539)
T KOG0548|consen 399 AACYLKLGEYPEALKDAKKCIELD--PNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS--------NAEAIDGYRR 468 (539)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch--------hHHHHHHHHH
Confidence 889999999999999877776652 432 111 111111123566666554433333321 2356666666
Q ss_pred HHHc
Q 005905 450 AIVA 453 (670)
Q Consensus 450 m~~~ 453 (670)
.+..
T Consensus 469 c~~a 472 (539)
T KOG0548|consen 469 CVEA 472 (539)
T ss_pred HHHH
Confidence 6664
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.035 Score=57.76 Aligned_cols=167 Identities=13% Similarity=0.098 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005905 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV-GIISYSSLMGACSNAKNWQKALELYE 320 (670)
Q Consensus 242 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~ 320 (670)
.+....+++++...-..--..+|...+....+..-+..|..+|.++.+.+..+ ++.+++++|..|| .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 45556666666544322233567777887778888888888888888877666 7778888887776 467788888888
Q ss_pred H-HHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-C
Q 005905 321 H-MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT--ITYSILLVACERKDDVEVGLMLLSQAKED-G 396 (670)
Q Consensus 321 ~-m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-g 396 (670)
. ++..| -+..--+..+.-+...++-..|..+|++....++.|+. ..|..+|.-=+.-|++..+.++-+++... .
T Consensus 426 LGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 426 LGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 5 33332 23333456677777788888888888888877666653 67888888778888888888877665542 2
Q ss_pred --CCCCHHHHHHHHHHH
Q 005905 397 --VIPNLVMFKCIIGMC 411 (670)
Q Consensus 397 --~~p~~~~~~~li~~~ 411 (670)
..|...+-..+++.|
T Consensus 504 ~~qe~~~~~~~~~v~RY 520 (656)
T KOG1914|consen 504 ADQEYEGNETALFVDRY 520 (656)
T ss_pred hhhcCCCChHHHHHHHH
Confidence 333333344445544
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.013 Score=60.35 Aligned_cols=191 Identities=17% Similarity=0.090 Sum_probs=140.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 005905 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 230 (670)
Q Consensus 151 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 230 (670)
.|+...+...+.+......-..+..++..-.+. .-...-|..-+ .+...|+++.|+..++.+.+. .+.|+..+.
T Consensus 271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~----~~~aa~YG~A~-~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~ 344 (484)
T COG4783 271 SPDFQLARARIRAKYEALPNQQAADLLAKRSKR----GGLAAQYGRAL-QTYLAGQYDEALKLLQPLIAA-QPDNPYYLE 344 (484)
T ss_pred CccHHHHHHHHHHHhccccccchHHHHHHHhCc----cchHHHHHHHH-HHHHhcccchHHHHHHHHHHh-CCCCHHHHH
Confidence 356666666666555544444443443333221 11122343333 345789999999999998874 467788888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc
Q 005905 231 IAINCCSQTGDWEFACSVYDDMTKKGVIPD-EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309 (670)
Q Consensus 231 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~ 309 (670)
...+.+.+.++..+|.+.++++.... |+ ....-.+..++.+.|++.+|..+++...... +-|+..|..|..+|...
T Consensus 345 ~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~ 421 (484)
T COG4783 345 LAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAEL 421 (484)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHh
Confidence 88999999999999999999999874 44 5566678889999999999999999988775 77899999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHH
Q 005905 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369 (670)
Q Consensus 310 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 369 (670)
|+..+|..-..+ +|...|+++.|+..+....+. ++++..++
T Consensus 422 g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~-~~~~~~~~ 462 (484)
T COG4783 422 GNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQQ-VKLGFPDW 462 (484)
T ss_pred CchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHh-ccCCcHHH
Confidence 999988765544 456689999999999888775 34444444
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00049 Score=61.12 Aligned_cols=90 Identities=11% Similarity=-0.024 Sum_probs=40.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCh
Q 005905 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347 (670)
Q Consensus 268 i~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 347 (670)
..++...|++++|...|+.+.... +.+...+..+..++...|++++|...|+...... +.+...+..+..++...|+.
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCH
Confidence 333444444444444444444433 2334444444444444444444444444444433 12444444444444444444
Q ss_pred hHHHHHHHHHHh
Q 005905 348 PKTMEVLSDMKS 359 (670)
Q Consensus 348 ~~A~~l~~~m~~ 359 (670)
++|+..|+....
T Consensus 109 ~eAi~~~~~Al~ 120 (144)
T PRK15359 109 GLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0012 Score=62.36 Aligned_cols=125 Identities=19% Similarity=0.120 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005905 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 234 (670)
Q Consensus 155 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 234 (670)
...+..+....+.|++.+|+..|.+.... -++|...|+.+.-+|.+.|+++.|..-|.+..+.. +.++..+|-|.-
T Consensus 101 ~ll~~~gk~~~~~g~~~~A~~~~rkA~~l---~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgm 176 (257)
T COG5010 101 ELLAAQGKNQIRNGNFGEAVSVLRKAARL---APTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGM 176 (257)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHhcc---CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHH
Confidence 33333444444444444444444444332 13334444444444444444444444444444332 222333333333
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 005905 235 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 284 (670)
Q Consensus 235 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~ 284 (670)
.|.-.|+.+.|..++......+.. |...-..+.-+....|+++.|..+.
T Consensus 177 s~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 177 SLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 444444444444444444333322 3333333333444444444444433
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0023 Score=60.43 Aligned_cols=126 Identities=11% Similarity=-0.015 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHH
Q 005905 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306 (670)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~ 306 (670)
...+..+....+.|++..|...|++..... ++|..+|+.+--+|.+.|+.+.|..-|.+..+.. .-+...+|.|.-.|
T Consensus 101 ~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~ 178 (257)
T COG5010 101 ELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSL 178 (257)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHH
Confidence 333444444444555555555554444332 2344444444444455555555544444444432 22233344444444
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHH
Q 005905 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355 (670)
Q Consensus 307 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 355 (670)
.-.|+.+.|..++......+ ..|...-..+.-.....|++++|..+-.
T Consensus 179 ~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 179 LLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 44455555555544444332 1233334444444444455544444433
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0038 Score=70.56 Aligned_cols=233 Identities=9% Similarity=0.080 Sum_probs=115.6
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 005905 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKL-YTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSG 168 (670)
Q Consensus 90 ~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~-~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g 168 (670)
.+...|..|+..+...+++++|.++.+...+. .|+... |-.+...+...++.+.+ ... .++.......
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~--------~lv-~~l~~~~~~~ 97 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDS--------NLL-NLIDSFSQNL 97 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhh--------hhh-hhhhhccccc
Confidence 34555666666666666666666666655443 233322 22222234444443221 001 3344444444
Q ss_pred CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005905 169 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248 (670)
Q Consensus 169 ~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 248 (670)
++.-...++..|..- .-+...+..+..+|-+.|+.++|..+|+++.+.+ +.|+.+.|-+...|+.. ++++|.++
T Consensus 98 ~~~~ve~~~~~i~~~----~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m 171 (906)
T PRK14720 98 KWAIVEHICDKILLY----GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITY 171 (906)
T ss_pred chhHHHHHHHHHHhh----hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHH
Confidence 443333333333321 2233345555555556666666666666665555 44555555555555555 55666555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHH-----HhcCChHHHHHHHHHHHHC-CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005905 249 YDDMTKKGVIPDEVFLSALIDFA-----GHAGKVEAAFEILQEAKNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHM 322 (670)
Q Consensus 249 ~~~m~~~g~~p~~~t~~~li~~~-----~~~g~~~~A~~i~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 322 (670)
+.+....-+ +..-|+.+.... ....+.+.-..+.+.+... +..--+.++--+-..|-..++++++..+++.+
T Consensus 172 ~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~i 249 (906)
T PRK14720 172 LKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKI 249 (906)
T ss_pred HHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 555443311 001111111100 0112222333333333332 22333455556667788888899999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHH
Q 005905 323 KSIKLKPTVSTMNALITALC 342 (670)
Q Consensus 323 ~~~~~~p~~~~~~~li~~~~ 342 (670)
.+... .|.....-++.+|.
T Consensus 250 L~~~~-~n~~a~~~l~~~y~ 268 (906)
T PRK14720 250 LEHDN-KNNKAREELIRFYK 268 (906)
T ss_pred HhcCC-cchhhHHHHHHHHH
Confidence 88763 47777777887776
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00072 Score=60.06 Aligned_cols=86 Identities=12% Similarity=-0.053 Sum_probs=32.7
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 005905 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 280 (670)
Q Consensus 201 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 280 (670)
+...|++++|...|+...... +.+..+|..+..++.+.|++++|...|+........ +...+..+..++...|+.++|
T Consensus 34 ~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~~g~~~eA 111 (144)
T PRK15359 34 SWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKMMGEPGLA 111 (144)
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcCCHHHH
Confidence 333444444444444333332 223333333444444444444444444443333221 333333333333333444444
Q ss_pred HHHHHHHH
Q 005905 281 FEILQEAK 288 (670)
Q Consensus 281 ~~i~~~m~ 288 (670)
...|+...
T Consensus 112 i~~~~~Al 119 (144)
T PRK15359 112 REAFQTAI 119 (144)
T ss_pred HHHHHHHH
Confidence 44443333
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0079 Score=56.91 Aligned_cols=87 Identities=16% Similarity=0.210 Sum_probs=43.2
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005905 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ----TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 276 (670)
Q Consensus 201 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~ 276 (670)
+.+..+++.|.+.++.|.+.+ +..+.+.|..++.+ .+.+.+|.-+|++|.++ ..|+..+.+-...++...|+
T Consensus 147 ~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 344455555555555555432 12333333333322 33455555555555442 23455555555555555555
Q ss_pred hHHHHHHHHHHHHCC
Q 005905 277 VEAAFEILQEAKNQG 291 (670)
Q Consensus 277 ~~~A~~i~~~m~~~~ 291 (670)
+++|..++++...+.
T Consensus 223 ~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 223 YEEAESLLEEALDKD 237 (299)
T ss_pred HHHHHHHHHHHHhcc
Confidence 555555555555544
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.002 Score=72.03 Aligned_cols=182 Identities=9% Similarity=0.090 Sum_probs=127.1
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 005905 149 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH-ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227 (670)
Q Consensus 149 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~-~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 227 (670)
....+...+-.|.....+.|.+++|..+++...+ +.||. .....+...+.+.+++++|...++...... +.+..
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~----~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~ 155 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ----RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAR 155 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh----hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHH
Confidence 3456677888888888888888888888888876 36664 445567778888888888888888888766 56677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHH
Q 005905 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307 (670)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~ 307 (670)
..+.+..++.+.|++++|..+|++....+.. +..++..+..++-..|+.++|...|+...+.. .+....|+.++
T Consensus 156 ~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~---- 229 (694)
T PRK15179 156 EILLEAKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL---- 229 (694)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH----
Confidence 7788888888888888888888888875432 46778888888888888888888888887653 34445555443
Q ss_pred hcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHh
Q 005905 308 NAKNWQKALELYEHMKSI----KLKPTVSTMNALITALCD 343 (670)
Q Consensus 308 ~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~li~~~~~ 343 (670)
+++..-...++++.-. |....+.+...+|.-|.+
T Consensus 230 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (694)
T PRK15179 230 --VDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGR 267 (694)
T ss_pred --HHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhh
Confidence 2333444445544322 222234445555555544
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.5e-05 Score=51.02 Aligned_cols=32 Identities=28% Similarity=0.485 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC
Q 005905 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364 (670)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 364 (670)
+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44555555555555555555555555544444
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.87 E-value=2.4e-05 Score=50.33 Aligned_cols=34 Identities=24% Similarity=0.428 Sum_probs=32.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCH
Q 005905 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC 127 (670)
Q Consensus 94 ~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 127 (670)
+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 7999999999999999999999999999999983
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00063 Score=59.75 Aligned_cols=24 Identities=21% Similarity=0.529 Sum_probs=9.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 005905 299 YSSLMGACSNAKNWQKALELYEHM 322 (670)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~m 322 (670)
+..+...|.+.|++++|..+|+..
T Consensus 54 ~~~la~~~~~~~~~~~A~~~~~~~ 77 (135)
T TIGR02552 54 WLGLAACCQMLKEYEEAIDAYALA 77 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.3e-05 Score=50.14 Aligned_cols=33 Identities=33% Similarity=0.664 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC
Q 005905 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125 (670)
Q Consensus 93 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 125 (670)
.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999987
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.011 Score=66.03 Aligned_cols=131 Identities=7% Similarity=-0.031 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005905 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 340 (670)
Q Consensus 261 ~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 340 (670)
...+..|.....+.|.+++|..+++...+.. +-+......+...+.+.+++++|...+++.....+ -+....+.+..+
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~~~~~a~~ 163 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSAREILLEAKS 163 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHHHHHHHHH
Confidence 4444444444444455555555544444432 22233333444444445555555555444444331 133334444444
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 341 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 341 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 394 (670)
+.+.|++++|..+|++.... .+-+..++..+-.++...|+.++|...|+...+
T Consensus 164 l~~~g~~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 164 WDEIGQSEQADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHhcchHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455555555555554442 111234444444444444555555555544443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00097 Score=58.53 Aligned_cols=92 Identities=18% Similarity=0.210 Sum_probs=41.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005905 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275 (670)
Q Consensus 196 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g 275 (670)
.+...+...|++++|.+.|+.+...+ +.+...|..+...|.+.|++++|..+|++..+.+.. +..++..+...+...|
T Consensus 22 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~g 99 (135)
T TIGR02552 22 ALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAECLLALG 99 (135)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHcC
Confidence 33344444555555555554444433 334444444444554555555555555444443321 3333333444444444
Q ss_pred ChHHHHHHHHHHHH
Q 005905 276 KVEAAFEILQEAKN 289 (670)
Q Consensus 276 ~~~~A~~i~~~m~~ 289 (670)
+.+.|...++...+
T Consensus 100 ~~~~A~~~~~~al~ 113 (135)
T TIGR02552 100 EPESALKALDLAIE 113 (135)
T ss_pred CHHHHHHHHHHHHH
Confidence 44444444444443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00036 Score=72.28 Aligned_cols=119 Identities=13% Similarity=0.166 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 005905 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQG--ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 337 (670)
Q Consensus 260 ~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 337 (670)
+...+..+++.+....+++.+..++....... ...-..|..++|+.|.+.|..+.+..++..=...|+-||..|+|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 44444445555555555555555554444331 1111223345555555555555555555555555555555555555
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005905 338 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378 (670)
Q Consensus 338 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 378 (670)
|+.+.+.|++..|.++..+|...+...+..|+...+.+|.+
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 55555555555555555555554444555555544444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.029 Score=52.78 Aligned_cols=155 Identities=15% Similarity=0.146 Sum_probs=84.1
Q ss_pred CCHHHHHHHHHHHhhC-CCC-CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 005905 168 GAVDRAFDVLAEMNAE-VHP-VDPDHI-TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 244 (670)
Q Consensus 168 g~~~~A~~l~~~m~~~-~~~-~~pd~~-t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 244 (670)
.+.++.++++.++... ..+ ..++.. .|..++-+....|+.+.|...++.+..+- +.+..+--.-.-.+-..|.+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 4567777777766543 112 334433 34445556667777777777777766543 3333322222222344567777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005905 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324 (670)
Q Consensus 245 A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 324 (670)
|.++++.+++.+.. |.+++-.=+...-..|+--+|++-+....+. +..|...|.-+...|...|++++|.-.++++.-
T Consensus 105 A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 77777777766532 5555554444444455544555444444433 345555666666666666666666655555554
Q ss_pred C
Q 005905 325 I 325 (670)
Q Consensus 325 ~ 325 (670)
.
T Consensus 183 ~ 183 (289)
T KOG3060|consen 183 I 183 (289)
T ss_pred c
Confidence 3
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.023 Score=54.51 Aligned_cols=299 Identities=10% Similarity=0.072 Sum_probs=165.9
Q ss_pred hhhhhHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCHHHHH
Q 005905 72 KSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL-ITTCAKSGKVDAMF 147 (670)
Q Consensus 72 ~~~~~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l-i~~~~~~g~~~~~~ 147 (670)
.+..++++|++++..-. +.+......|..+|....++..|-..|+.+... .|...-|..- ...+-+.+.+..++
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHH
Confidence 44567888888865432 346677888888889999999999999988775 4554443211 11222333333322
Q ss_pred h---cCCCCHHHHHHHH--H--HHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005905 148 E---NVKPDRVVFNALI--T--ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 220 (670)
Q Consensus 148 ~---~~~~~~~~~~~li--~--~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 220 (670)
. .+..+....+..+ . ..-..+++..+..+.++...+ -+..+.+.......+.|+++.|.+-|+...+.
T Consensus 99 rV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e-----n~Ad~~in~gCllykegqyEaAvqkFqaAlqv 173 (459)
T KOG4340|consen 99 RVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE-----NEADGQINLGCLLYKEGQYEAAVQKFQAALQV 173 (459)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCC-----CccchhccchheeeccccHHHHHHHHHHHHhh
Confidence 2 1222222222221 1 122356666666666665432 23334444444455778888888888777665
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccH
Q 005905 221 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV----FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296 (670)
Q Consensus 221 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~ 296 (670)
+--.....||..+. +.+.|++..|++...+++++|++-... .-.-.+++-. .|+ -..++.. + -+
T Consensus 174 sGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrs-vgN---t~~lh~S----a---l~ 241 (459)
T KOG4340|consen 174 SGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRS-VGN---TLVLHQS----A---LV 241 (459)
T ss_pred cCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhc-ccc---hHHHHHH----H---HH
Confidence 43334466766554 345677788888888887777642111 0000111000 000 0000100 0 02
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005905 297 ISYSSLMGACSNAKNWQKALELYEHMKSI-KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375 (670)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 375 (670)
..+|.-...+.+.|+++.|.+-+-+|.-. ....|++|...+.-.= ..+++.+..+-+.-+.... +--..||..++-.
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLll 319 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLL 319 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 23344444567889999999888888622 2244666665543222 2344555555555555442 2346789989999
Q ss_pred HHhcCCHHHHHHHHHH
Q 005905 376 CERKDDVEVGLMLLSQ 391 (670)
Q Consensus 376 ~~~~g~~~~a~~~~~~ 391 (670)
||+..-++.|-.++.+
T Consensus 320 yCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLAE 335 (459)
T ss_pred HhhhHHHhHHHHHHhh
Confidence 9999999999888853
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.15 Score=56.46 Aligned_cols=218 Identities=11% Similarity=0.052 Sum_probs=146.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCCHHHH
Q 005905 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGA 111 (670)
Q Consensus 35 l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~g~~~~A 111 (670)
.+..++...|++..+++.++. |.......+-.-...+.|..++|..+++... ..|..|...+-.+|...+..++|
T Consensus 19 ~ld~~qfkkal~~~~kllkk~--Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKH--PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 346788999999999998886 4443333322233466788889988877542 34788888888999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH-------HhcCCCCHHHHHHHHHHHHhcCC----------HHHHH
Q 005905 112 FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM-------FENVKPDRVVFNALITACGQSGA----------VDRAF 174 (670)
Q Consensus 112 ~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~-------~~~~~~~~~~~~~li~~~~~~g~----------~~~A~ 174 (670)
..+|++.... -|+......+..+|.+.+.+.+. ....+.+...|=++++.+.+.-. ..-|.
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 9999998875 57788888888899998887652 22345556665566666655422 34466
Q ss_pred HHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005905 175 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253 (670)
Q Consensus 175 ~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~-~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 253 (670)
+.++.+.+.+ |-.-+..-...-+..+...|.+++|.+++ ....+.-.+.+...-+--++.+...++|.+..++-.++.
T Consensus 175 ~m~~~~l~~~-gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 175 KMVQKLLEKK-GKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHhccC-CccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 6777777653 31122222223344455778888888888 344444334455555666777777788877777777777
Q ss_pred HCCC
Q 005905 254 KKGV 257 (670)
Q Consensus 254 ~~g~ 257 (670)
..|.
T Consensus 254 ~k~~ 257 (932)
T KOG2053|consen 254 EKGN 257 (932)
T ss_pred HhCC
Confidence 7654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.094 Score=58.49 Aligned_cols=218 Identities=13% Similarity=0.160 Sum_probs=126.0
Q ss_pred HHHHHHHhhhhhHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 005905 65 ARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144 (670)
Q Consensus 65 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~ 144 (670)
..+.++-.+.+.+.+|++-|-+. .|+..|.-++..+.+.|.+++-...+....+..-+|.. =+.||-+|++.+++.
T Consensus 1108 sqlakAQL~~~~v~dAieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~ 1183 (1666)
T KOG0985|consen 1108 SQLAKAQLQGGLVKDAIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLT 1183 (1666)
T ss_pred HHHHHHHHhcCchHHHHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHH
Confidence 34555555566677777666444 34456778888888888888877777655555444443 346777888888877
Q ss_pred HHHhc-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 005905 145 AMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 223 (670)
Q Consensus 145 ~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 223 (670)
+..+- ..||......+.+-|...|.++.|.-+|... .-|..+...+...|++..|..--++.
T Consensus 1184 elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v-----------SN~a~La~TLV~LgeyQ~AVD~aRKA------ 1246 (1666)
T KOG0985|consen 1184 ELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNV-----------SNFAKLASTLVYLGEYQGAVDAARKA------ 1246 (1666)
T ss_pred HHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHh-----------hhHHHHHHHHHHHHHHHHHHHHhhhc------
Confidence 76653 4577777777777777777777777666543 23555666666667666665433222
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHH
Q 005905 224 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303 (670)
Q Consensus 224 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li 303 (670)
.+..+|..+-.+|...+.+.-| +|.-.++.....-+..++..|...|-+++...+++...... ......|+-|.
T Consensus 1247 ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELa 1320 (1666)
T KOG0985|consen 1247 NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELA 1320 (1666)
T ss_pred cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHH
Confidence 2345666666565554443322 23333333334445556666666666666655555432211 11233444444
Q ss_pred HHHHhc
Q 005905 304 GACSNA 309 (670)
Q Consensus 304 ~~~~~~ 309 (670)
-.|++-
T Consensus 1321 iLYsky 1326 (1666)
T KOG0985|consen 1321 ILYSKY 1326 (1666)
T ss_pred HHHHhc
Confidence 444443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0024 Score=65.99 Aligned_cols=123 Identities=13% Similarity=0.118 Sum_probs=64.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc
Q 005905 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309 (670)
Q Consensus 230 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~ 309 (670)
.+|+..+...++++.|..+|+++.+.. |+. ...++..+...++-.+|.+++.+..+.. +-+....+.-...|.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 344555555566666666666666553 332 2334555555555555666655555432 33444444444555555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 005905 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358 (670)
Q Consensus 310 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 358 (670)
++++.|..+.+++.+.. +-+..+|..|..+|.+.|++++|+..++.+.
T Consensus 248 ~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 55666666555555442 1133355555555555555555555555443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.63 E-value=5.1e-05 Score=47.25 Aligned_cols=29 Identities=34% Similarity=0.671 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 005905 333 TMNALITALCDGDQLPKTMEVLSDMKSLG 361 (670)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g 361 (670)
+||+||++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00083 Score=69.66 Aligned_cols=123 Identities=11% Similarity=0.149 Sum_probs=103.2
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHH
Q 005905 291 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK--LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368 (670)
Q Consensus 291 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 368 (670)
+.+.+......+++.+....+++.+..++.+.+... ...-..|..++|..|...|..++++++++.=...|+-||..|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 446667778888998888899999999999888642 222244567999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005905 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413 (670)
Q Consensus 369 ~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r 413 (670)
|+.|++.+.+.|++..|.++...|...+...+..++.--+..|.+
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 999999999999999999999999887777777777666666544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.12 Score=57.75 Aligned_cols=348 Identities=12% Similarity=0.039 Sum_probs=192.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 005905 39 GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVL 115 (670)
Q Consensus 39 g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~g~~~~A~~~~ 115 (670)
.+...|+..|-+..+.+ +.-...+..+...++...+...|...|+... ..|..++......|++..+++.|..+.
T Consensus 472 K~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHH
Confidence 44777788777777776 4445555567777777677788888887653 456778888889999999999998883
Q ss_pred HHHHHcCCCCC-HHHHH--HHHHHHHhcCCHHHHH-------hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 005905 116 RLVQEAGLKAD-CKLYT--TLITTCAKSGKVDAMF-------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185 (670)
Q Consensus 116 ~~m~~~g~~pd-~~~~~--~li~~~~~~g~~~~~~-------~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 185 (670)
-..-+. .|- .-.++ .+--.|.+.++...+. ..-+.|...|..+..+|..+|++..|+++|.+...
T Consensus 550 l~~~qk--a~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--- 624 (1238)
T KOG1127|consen 550 LRAAQK--APAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--- 624 (1238)
T ss_pred HHHhhh--chHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh---
Confidence 222221 111 11111 1222334444443322 23356888999999999999999999999998865
Q ss_pred CCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-----
Q 005905 186 PVDPDHITIGALM--KACANAGQVDRAREVYKMIHKYN------IKGTPEVYTIAINCCSQTGDWEFACSVYDDM----- 252 (670)
Q Consensus 186 ~~~pd~~t~~~li--~~~~~~g~~~~A~~~~~~m~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m----- 252 (670)
+.|+. +|...- ..-+..|.+.+|...+..+.... ...-..++-.+...+.-.|-..+|..+|++-
T Consensus 625 -LrP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~ 702 (1238)
T KOG1127|consen 625 -LRPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFI 702 (1238)
T ss_pred -cCcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 46653 333322 24567789999988887765421 1111223322222233333333333333322
Q ss_pred --HHCCCCCCHHHHHHHHHHH-----------------------HhcCCh---H---HHHHHHHHHHHCCCCccHHHHHH
Q 005905 253 --TKKGVIPDEVFLSALIDFA-----------------------GHAGKV---E---AAFEILQEAKNQGISVGIISYSS 301 (670)
Q Consensus 253 --~~~g~~p~~~t~~~li~~~-----------------------~~~g~~---~---~A~~i~~~m~~~~~~~~~~~~~~ 301 (670)
.......+...|-.+-++| -..+.. + -|.+.+-.-. .+..+..+|..
T Consensus 703 ~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl--sl~~~~~~WyN 780 (1238)
T KOG1127|consen 703 VSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL--SLAIHMYPWYN 780 (1238)
T ss_pred HHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH--HHhhccchHHH
Confidence 2221111222222221111 111111 1 0111110000 01112233333
Q ss_pred HHHHHHh----cC----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005905 302 LMGACSN----AK----NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373 (670)
Q Consensus 302 li~~~~~----~g----~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 373 (670)
|+.-|.+ +| +...|...+.+..+.. ..+..+||.|-.. ...|.+.-|.-.|-+-... .+-+..+|..+-
T Consensus 781 LGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~Nlg 857 (1238)
T KOG1127|consen 781 LGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLG 857 (1238)
T ss_pred HhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccc
Confidence 3333322 22 2345666676665543 3477788877655 5556777776666655443 345677888777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 005905 374 VACERKDDVEVGLMLLSQAKEDGVIPNLV 402 (670)
Q Consensus 374 ~a~~~~g~~~~a~~~~~~m~~~g~~p~~~ 402 (670)
..|....+++.|...|.+... +.|+..
T Consensus 858 vL~l~n~d~E~A~~af~~~qS--LdP~nl 884 (1238)
T KOG1127|consen 858 VLVLENQDFEHAEPAFSSVQS--LDPLNL 884 (1238)
T ss_pred eeEEecccHHHhhHHHHhhhh--cCchhh
Confidence 778889999999999987765 335443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.003 Score=65.29 Aligned_cols=126 Identities=17% Similarity=0.153 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005905 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272 (670)
Q Consensus 193 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 272 (670)
...+++..+...++++.|.++|+++.+.. | .+...++..+...++-.+|.+++++.++.... +...+..-...|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--p--ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--P--EVAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--C--cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 34456677777888999999999988765 3 34556788888888888999999888866433 6667777777888
Q ss_pred hcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005905 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324 (670)
Q Consensus 273 ~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 324 (670)
+.++.+.|+.+.+++.+.. +.+..+|..|..+|.+.|+++.|...++.+.-
T Consensus 246 ~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred hcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 9999999999999998864 45566899999999999999999988887763
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0067 Score=53.99 Aligned_cols=115 Identities=15% Similarity=0.183 Sum_probs=51.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChH
Q 005905 204 AGQVDRAREVYKMIHKYNIKGTP---EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE--VFLSALIDFAGHAGKVE 278 (670)
Q Consensus 204 ~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~li~~~~~~g~~~ 278 (670)
.++...+...++.+.+.. +.+. ...-.+...+...|++++|...|+........|+. .....+...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 455555555555554432 2221 12222334455555555555555555554422211 12223344455555555
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005905 279 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321 (670)
Q Consensus 279 ~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 321 (670)
+|+..++..... ......+....+.|.+.|++++|...|+.
T Consensus 103 ~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555555442221 12233444455555555555555555543
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0041 Score=55.37 Aligned_cols=130 Identities=15% Similarity=0.131 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHH
Q 005905 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT--PEVYTIA 232 (670)
Q Consensus 155 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~l 232 (670)
..|..++..+ ..++...+...++.+.....+-.......-.+...+...|++++|...|+.+......++ ......+
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 4566677776 488899999999999886211111123333455778899999999999999988663232 2345567
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005905 233 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287 (670)
Q Consensus 233 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m 287 (670)
...+...|++++|+..++...... .....+....++|...|+.++|...|+..
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 888999999999999997754333 34456677888999999999999998764
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.039 Score=61.42 Aligned_cols=180 Identities=13% Similarity=0.147 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005905 170 VDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248 (670)
Q Consensus 170 ~~~A~~l~~~m~~~~~~~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 248 (670)
...|+..|-+..+. .|+ ...|..|...|+..-+...|.+.|+..-+.+ ..+...+....+.|+...+++.|..+
T Consensus 474 ~~~al~ali~alrl----d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 474 SALALHALIRALRL----DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred HHHHHHHHHHHHhc----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHH
Confidence 55666666555543 222 3466677777777667777777777776655 45566677777777777777777776
Q ss_pred HHHHHHCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 005905 249 YDDMTKKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327 (670)
Q Consensus 249 ~~~m~~~g~~-p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 327 (670)
.-..-+.... .-..-|...--.|...++..+|..-|+...+.. +-|...|..++.+|..+|.+..|.++|.+....
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L-- 625 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL-- 625 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--
Confidence 3222111100 000111122233555666667776666666654 456667777777777777777777777766543
Q ss_pred CCCHHHHHH--HHHHHHhCCChhHHHHHHHHHH
Q 005905 328 KPTVSTMNA--LITALCDGDQLPKTMEVLSDMK 358 (670)
Q Consensus 328 ~p~~~~~~~--li~~~~~~g~~~~A~~l~~~m~ 358 (670)
+|+. +|.. .....+..|.+.+|+..+....
T Consensus 626 rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 626 RPLS-KYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 2322 1221 1223445667777776666554
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.098 Score=57.83 Aligned_cols=222 Identities=14% Similarity=0.088 Sum_probs=110.0
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 005905 166 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC--ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 243 (670)
Q Consensus 166 ~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~--~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 243 (670)
..+++..|+.....+.+. .|+. .|..++.++ .+.|+.++|..+++.....+. .|..+...+-.+|...++.+
T Consensus 21 d~~qfkkal~~~~kllkk----~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK----HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred hhHHHHHHHHHHHHHHHH----CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhh
Confidence 445666666666666654 3442 333444443 356677777766665554442 25566666667777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC----------CHH
Q 005905 244 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK----------NWQ 313 (670)
Q Consensus 244 ~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g----------~~~ 313 (670)
+|..+|+..... .|+......+..+|.+.+.+.+-.++--++-+. .+-+...+=++++.+...- -..
T Consensus 95 ~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 95 EAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 777777766554 345555566666666666654433332222221 1222232223333332221 123
Q ss_pred HHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhCCChhHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005905 314 KALELYEHMKSIK-LKPTVSTMNALITALCDGDQLPKTMEVLS-DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391 (670)
Q Consensus 314 ~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~l~~-~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 391 (670)
-|.+.++.+.+.+ .--+..-.-.-...+-..|++++|++++. ...+.-..-+...-+.-+..+...+++.+..++-.+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 3555555555432 11111111112233345666777777663 233221222333333444555566666666666666
Q ss_pred HHHCC
Q 005905 392 AKEDG 396 (670)
Q Consensus 392 m~~~g 396 (670)
+...|
T Consensus 252 Ll~k~ 256 (932)
T KOG2053|consen 252 LLEKG 256 (932)
T ss_pred HHHhC
Confidence 66554
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0001 Score=45.85 Aligned_cols=29 Identities=31% Similarity=0.588 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005905 228 VYTIAINCCSQTGDWEFACSVYDDMTKKG 256 (670)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g 256 (670)
+||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0017 Score=53.00 Aligned_cols=67 Identities=25% Similarity=0.426 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhCC--------ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005905 310 KNWQKALELYEHMKSIKL-KPTVSTMNALITALCDGD--------QLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376 (670)
Q Consensus 310 g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g--------~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 376 (670)
+++...-.+|+.++..|+ -|++.+|+.++.+.++.. +.-+.+.+++.|...+++|+..||+.++.++
T Consensus 39 ~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~L 114 (120)
T PF08579_consen 39 EDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSL 114 (120)
T ss_pred cchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 444444444444444444 444444444444433321 1223344445555545555555555555443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0033 Score=51.31 Aligned_cols=81 Identities=14% Similarity=0.230 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHH
Q 005905 333 TMNALITALCDGDQLPKTMEVLSDMKSLGL-CPNTITYSILLVACERKD--------DVEVGLMLLSQAKEDGVIPNLVM 403 (670)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~m~~~g~~p~~~~ 403 (670)
|-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. ++-+.+.+++.|+..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334567777778999999999999999999 999999999999876543 24467889999999999999999
Q ss_pred HHHHHHHHHh
Q 005905 404 FKCIIGMCSR 413 (670)
Q Consensus 404 ~~~li~~~~r 413 (670)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999987643
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0033 Score=50.30 Aligned_cols=95 Identities=16% Similarity=0.101 Sum_probs=62.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005905 157 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 236 (670)
Q Consensus 157 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 236 (670)
|..+...+...|++++|...|++..+.. +.+...+..+...+...+++++|.+.|+...+.. +.+..++..+...+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD---PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHH
Confidence 4455666677777777777777776531 2233555666666777777777777777766654 33445666667777
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 005905 237 SQTGDWEFACSVYDDMTKK 255 (670)
Q Consensus 237 ~~~g~~~~A~~l~~~m~~~ 255 (670)
...|+++.|...+....+.
T Consensus 79 ~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 79 YKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHhHHHHHHHHHHHHcc
Confidence 7777777777777666543
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.004 Score=57.41 Aligned_cols=89 Identities=19% Similarity=0.328 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----------------CHHHHH
Q 005905 188 DPDHITIGALMKACAN-----AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG----------------DWEFAC 246 (670)
Q Consensus 188 ~pd~~t~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----------------~~~~A~ 246 (670)
..|..+|..++..|.+ .|.++-....++.|.+.|+.-|..+|+.|++.+=+.. +-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4567777777777764 4677777778888888888888888888888876521 234455
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005905 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGK 276 (670)
Q Consensus 247 ~l~~~m~~~g~~p~~~t~~~li~~~~~~g~ 276 (670)
+++++|...|+.||..|+..+++.+++.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 555555555555555555555555544433
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.002 Score=59.29 Aligned_cols=100 Identities=13% Similarity=0.278 Sum_probs=48.8
Q ss_pred cHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHH
Q 005905 295 GIISYSSLMGACSN-----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369 (670)
Q Consensus 295 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 369 (670)
+-.+|..+++.|.+ .|.++=....+..|.+.|+..|..+|+.|+..+=+. .+ .|... |
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg-~f---------------vp~n~-f 108 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKG-KF---------------VPRNF-F 108 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCC-Cc---------------ccccH-H
Confidence 34455555555543 245555555566666666666666666666654431 11 11111 0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005905 370 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413 (670)
Q Consensus 370 ~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r 413 (670)
.++..-| -.+.+-|++++++|...|+-||.+++..+++.+|+
T Consensus 109 Q~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~ 150 (228)
T PF06239_consen 109 QAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGR 150 (228)
T ss_pred HHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcc
Confidence 0111011 12233455666666666666666666666666655
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0094 Score=50.66 Aligned_cols=101 Identities=14% Similarity=0.044 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHH
Q 005905 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK--GTPEVYTIAI 233 (670)
Q Consensus 156 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li 233 (670)
++..+...+.+.|++++|.+.|..+.....+-......+..+..++.+.|+++.|...|+.+...... ....++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 34555666667777777777777776541110111234445666677777777777777766654211 1234566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC
Q 005905 234 NCCSQTGDWEFACSVYDDMTKKG 256 (670)
Q Consensus 234 ~~~~~~g~~~~A~~l~~~m~~~g 256 (670)
.++.+.|+.++|...++++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 66677777777777777776654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.21 Score=49.22 Aligned_cols=220 Identities=10% Similarity=0.095 Sum_probs=115.2
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 005905 162 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 241 (670)
Q Consensus 162 ~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 241 (670)
..+.+.|.+++|..-|+.+... .|+..+ ...++.+.--.++-. .....+..+...||
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~----~~s~~~---~~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD 170 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQH----EPSNGL---VLEAQSKLALIQEHW----------------VLVQQLKSASGSGD 170 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhc----CCCcch---hHHHHHHHHhHHHHH----------------HHHHHHHHHhcCCc
Confidence 4567889999999999988875 343211 112222111111111 11122233344566
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005905 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321 (670)
Q Consensus 242 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 321 (670)
...|+.....+++..+ .|...+..-..+|...|.+..|..=++...+.. .-+..+.--+-..+...|+.+.++...++
T Consensus 171 ~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRE 248 (504)
T KOG0624|consen 171 CQNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRE 248 (504)
T ss_pred hhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 6666666666655432 344555555556666666666655555544433 22233333444555556666666555555
Q ss_pred HHhCCCCCCHHH----HHHH---------HHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHH---HHHHHHHhcCCHHHH
Q 005905 322 MKSIKLKPTVST----MNAL---------ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS---ILLVACERKDDVEVG 385 (670)
Q Consensus 322 m~~~~~~p~~~~----~~~l---------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~---~ll~a~~~~g~~~~a 385 (670)
-.+. .||-.. |-.| +......+++.++++..+...+....-..++|+ .+-.++...|++.+|
T Consensus 249 CLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eA 326 (504)
T KOG0624|consen 249 CLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEA 326 (504)
T ss_pred HHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHH
Confidence 5443 233211 1110 122345677888888888877643221233333 344456678999999
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHH
Q 005905 386 LMLLSQAKEDGVIPN-LVMFKCIIGM 410 (670)
Q Consensus 386 ~~~~~~m~~~g~~p~-~~~~~~li~~ 410 (670)
++...+..+ +.|| ..++.--..+
T Consensus 327 iqqC~evL~--~d~~dv~~l~dRAeA 350 (504)
T KOG0624|consen 327 IQQCKEVLD--IDPDDVQVLCDRAEA 350 (504)
T ss_pred HHHHHHHHh--cCchHHHHHHHHHHH
Confidence 999988876 4465 4444333333
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.29 Score=52.58 Aligned_cols=103 Identities=15% Similarity=0.164 Sum_probs=57.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH---HHhcCCCCHHHHHHHHHHHHhcCCH
Q 005905 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---MFENVKPDRVVFNALITACGQSGAV 170 (670)
Q Consensus 94 ~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~---~~~~~~~~~~~~~~li~~~~~~g~~ 170 (670)
.|+.+...++....+++|.+.|..--. . ...+.++.+...+++ ....++-|....-.|..++...|.-
T Consensus 798 A~r~ig~~fa~~~~We~A~~yY~~~~~------~---e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC 868 (1189)
T KOG2041|consen 798 AFRNIGETFAEMMEWEEAAKYYSYCGD------T---ENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMC 868 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc------h---HhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchH
Confidence 455555555555555555555543211 1 112333333333322 2234555666677778888888888
Q ss_pred HHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005905 171 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 216 (670)
Q Consensus 171 ~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~ 216 (670)
++|.+.|-+-. .|. ..+..|....++.+|.++-+.
T Consensus 869 ~qAV~a~Lr~s------~pk-----aAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 869 DQAVEAYLRRS------LPK-----AAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHhcc------CcH-----HHHHHHHHHHHHHHHHHHHHh
Confidence 88888775532 232 345677777778777776543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0073 Score=48.19 Aligned_cols=90 Identities=22% Similarity=0.158 Sum_probs=39.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC
Q 005905 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311 (670)
Q Consensus 232 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~ 311 (670)
+...+...|++++|...+++..+.... +...+..+...+...+++++|.+.+....+.. +.+..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 333444444444444444444433211 22333334444444444444444444444432 2222344444445555555
Q ss_pred HHHHHHHHHHHH
Q 005905 312 WQKALELYEHMK 323 (670)
Q Consensus 312 ~~~A~~~~~~m~ 323 (670)
++.|...+....
T Consensus 84 ~~~a~~~~~~~~ 95 (100)
T cd00189 84 YEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.17 Score=47.86 Aligned_cols=161 Identities=16% Similarity=0.148 Sum_probs=112.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005905 158 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL-MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 236 (670)
Q Consensus 158 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 236 (670)
.-++-+....|+.+-|..+++++..+ + |...-...+ .--+-..|++++|.++|+.+.+.+ +.|..+|---+...
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~---f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAil 130 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDR---F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHh---C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHH
Confidence 34445556677888888888888775 2 432222111 112445788999999999988876 66777777666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC---CHH
Q 005905 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK---NWQ 313 (670)
Q Consensus 237 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~ 313 (670)
-..|+--+|++-+.+..+.= ..|...|.-+-..|...|++++|.-.++++.-.. +.+...+..+.+.+-..| +++
T Consensus 131 ka~GK~l~aIk~ln~YL~~F-~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~ 208 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKF-MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLE 208 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHH
Confidence 67777778888887777653 4488899999999999999999999999888764 445555555555554443 466
Q ss_pred HHHHHHHHHHhC
Q 005905 314 KALELYEHMKSI 325 (670)
Q Consensus 314 ~A~~~~~~m~~~ 325 (670)
.|.+.|.+..+.
T Consensus 209 ~arkyy~~alkl 220 (289)
T KOG3060|consen 209 LARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHHh
Confidence 777778777754
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.02 Score=48.58 Aligned_cols=97 Identities=18% Similarity=0.034 Sum_probs=46.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHH
Q 005905 194 IGALMKACANAGQVDRAREVYKMIHKYNIK--GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI--PDEVFLSALID 269 (670)
Q Consensus 194 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~t~~~li~ 269 (670)
+......+.+.|++++|.+.|..+.+.... .....+..+..++.+.|+++.|...|+.+...... .....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334444555555555555555555443210 11234444555555555555555555555443211 01233444444
Q ss_pred HHHhcCChHHHHHHHHHHHHC
Q 005905 270 FAGHAGKVEAAFEILQEAKNQ 290 (670)
Q Consensus 270 ~~~~~g~~~~A~~i~~~m~~~ 290 (670)
++.+.|+.++|...+.++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 455555555555555555544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0097 Score=59.42 Aligned_cols=128 Identities=13% Similarity=0.041 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHH
Q 005905 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF-AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306 (670)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~-~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~ 306 (670)
+|..++...-+.+..+.|..+|.+..+.+. .+..+|...... |...++.+.|.++|+...+. +..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 455555555555556666666666553321 122223222222 22244455566666665554 344555566666666
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 307 SNAKNWQKALELYEHMKSIKLKPTV----STMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 307 ~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
.+.++.+.|+.+|++.... -+.. ..|...+.-=.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666665543 2222 3666666666666666666666666665
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.011 Score=58.89 Aligned_cols=144 Identities=12% Similarity=0.083 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005905 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN-AKNWQKALELYEHMKSIKLKPTVSTMNALITA 340 (670)
Q Consensus 262 ~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 340 (670)
.+|..++..+-+.+..+.|..+|.+..+.+ ..+..+|.....+-.. .++.+.|.++|+...+. +..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467788888888888999999999988654 3333444444444233 46667799999987754 34577888888888
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005905 341 LCDGDQLPKTMEVLSDMKSLGLCPNT---ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 410 (670)
Q Consensus 341 ~~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 410 (670)
+...++.+.|..+|++.... +.++. ..|...+.-=.+.|+++.+.++.+++.+. -|+......+++-
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~r 149 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDR 149 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCC
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHH
Confidence 88999999999999988865 33332 47888888888889999999998888874 3444444445543
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.016 Score=60.15 Aligned_cols=85 Identities=11% Similarity=0.102 Sum_probs=35.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005905 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387 (670)
Q Consensus 308 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 387 (670)
..|++++|...|++..+... .+...|..+..+|...|++++|+..+++..... +.+...|..+..+|.+.|++++|..
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 34444444444444443321 133344444444444444444444444444321 1123334344444444444444444
Q ss_pred HHHHHHH
Q 005905 388 LLSQAKE 394 (670)
Q Consensus 388 ~~~~m~~ 394 (670)
.|++.++
T Consensus 92 ~~~~al~ 98 (356)
T PLN03088 92 ALEKGAS 98 (356)
T ss_pred HHHHHHH
Confidence 4444443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.006 Score=58.85 Aligned_cols=101 Identities=14% Similarity=0.132 Sum_probs=85.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCCC---CCHHHHHHHHHHHHcCCCH
Q 005905 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDS 108 (670)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~y~~li~~~~~~g~~ 108 (670)
-|.+++.+++++|++.|.+.++.. |.+.+++..-..++.+.|.++.|++-.+.... .-..+|..|..+|...|++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 356668999999999999999987 89999999889999999999999988876543 3356899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005905 109 EGAFQVLRLVQEAGLKADCKLYTTLITT 136 (670)
Q Consensus 109 ~~A~~~~~~m~~~g~~pd~~~~~~li~~ 136 (670)
++|++.|.+.++ +.|+..+|-.=+..
T Consensus 166 ~~A~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 166 EEAIEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHHhhhc--cCCCcHHHHHHHHH
Confidence 999999999887 57887777654443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.046 Score=48.21 Aligned_cols=98 Identities=10% Similarity=0.016 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 005905 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231 (670)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 231 (670)
+....-.+...+...|++++|..+|+-...- .|. ..-|-.|.-+|-..|++++|+..|......+ +.++..+-.
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~----Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ 108 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIY----DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWA 108 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHH
Confidence 3444555666677788888888888887763 444 3445566666777888888888888887776 566777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 232 AINCCSQTGDWEFACSVYDDMTKK 255 (670)
Q Consensus 232 li~~~~~~g~~~~A~~l~~~m~~~ 255 (670)
+-.++...|+.+.|.+-|+..+..
T Consensus 109 ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 788888888888888888776543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.71 Score=49.79 Aligned_cols=307 Identities=11% Similarity=0.053 Sum_probs=164.5
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHhhhCCC-CCH------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCH
Q 005905 61 KVYHARFFNVCKSQKAIKEAFRFFKLVPN-PTL------------STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC 127 (670)
Q Consensus 61 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~------------~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 127 (670)
+.+-.++.......-.++.|...|-+... +.+ ..-.+=|.+| -|.+++|.++|-+|-++.+
T Consensus 692 prLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL---- 765 (1189)
T KOG2041|consen 692 PRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL---- 765 (1189)
T ss_pred hHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh----
Confidence 34445566666666677777777755421 111 1112223333 4899999999988877643
Q ss_pred HHHHHHHHHHHhcCCHHHHHhcC-----C----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHH
Q 005905 128 KLYTTLITTCAKSGKVDAMFENV-----K----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198 (670)
Q Consensus 128 ~~~~~li~~~~~~g~~~~~~~~~-----~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li 198 (670)
.|..+.+.|++-.+.+-+ . --...|+.+...++....+++|.+.|..-... ...+
T Consensus 766 -----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-----------e~~~ 829 (1189)
T KOG2041|consen 766 -----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-----------ENQI 829 (1189)
T ss_pred -----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----------HhHH
Confidence 355666667666555411 1 12456788888888888888888887764321 1245
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 005905 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 278 (670)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 278 (670)
.++.+..++++-+.+-..+ +.+....-.+.+++...|.-++|.+.|-+- +. | ...+..|...+++.
T Consensus 830 ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----kaAv~tCv~LnQW~ 895 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----KAAVHTCVELNQWG 895 (1189)
T ss_pred HHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----HHHHHHHHHHHHHH
Confidence 5566666665554444333 333445556667777777777776655332 11 1 13345566666666
Q ss_pred HHHHHHHHHHHCCCCccHHH--------------HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC----HHHHHH
Q 005905 279 AAFEILQEAKNQGISVGIIS--------------YSSLMGACSNAKNWQKALELYEHMKSI----KLKPT----VSTMNA 336 (670)
Q Consensus 279 ~A~~i~~~m~~~~~~~~~~~--------------~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~----~~~~~~ 336 (670)
+|.++-+...- |.+.+ ..--|..+.+.|..-+|-+++.+|.+. +.++- .....+
T Consensus 896 ~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~A 971 (1189)
T KOG2041|consen 896 EAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGA 971 (1189)
T ss_pred HHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHH
Confidence 66555432210 11110 012345666777777777777776542 21111 111111
Q ss_pred H-HHHH----------HhCCChhHHHHHHHHHHhC---CC----CCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 005905 337 L-ITAL----------CDGDQLPKTMEVLSDMKSL---GL----CPNTITY--SILLVACERKDDVEVGLMLLSQAKED- 395 (670)
Q Consensus 337 l-i~~~----------~~~g~~~~A~~l~~~m~~~---g~----~p~~~t~--~~ll~a~~~~g~~~~a~~~~~~m~~~- 395 (670)
+ +.-+ -.+|..++|..+++.-... .+ ---...| -.+.+--...|.++.|++.--.+.++
T Consensus 972 lLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYE 1051 (1189)
T KOG2041|consen 972 LLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYE 1051 (1189)
T ss_pred HHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHh
Confidence 1 1111 1357777777766553321 01 1112233 34444456678888888876666554
Q ss_pred CCCCCHHHHHHH
Q 005905 396 GVIPNLVMFKCI 407 (670)
Q Consensus 396 g~~p~~~~~~~l 407 (670)
.+-|...+|+-+
T Consensus 1052 d~lpP~eiySll 1063 (1189)
T KOG2041|consen 1052 DFLPPAEIYSLL 1063 (1189)
T ss_pred hcCCHHHHHHHH
Confidence 566666777644
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.18 Score=49.04 Aligned_cols=177 Identities=10% Similarity=-0.010 Sum_probs=98.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005905 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVY---TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273 (670)
Q Consensus 197 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~ 273 (670)
....+...|++++|.+.|+.+...- +.+.... -.+..+|.+.+++++|...|++..+....-...-+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 3344456677777777777776643 2222322 23456667777777777777777766443333344333333321
Q ss_pred c--C---------------C---hHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 005905 274 A--G---------------K---VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333 (670)
Q Consensus 274 ~--g---------------~---~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 333 (670)
. + + ...|+.. +..++.-|-...-..+|...+..++.. =...
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~---------------~~~li~~yP~S~ya~~A~~rl~~l~~~----la~~ 177 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRD---------------FSKLVRGYPNSQYTTDATKRLVFLKDR----LAKY 177 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHH---------------HHHHHHHCcCChhHHHHHHHHHHHHHH----HHHH
Confidence 0 0 1 1122233 334444444444455665555544421 0111
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005905 334 MNALITALCDGDQLPKTMEVLSDMKSL--GLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393 (670)
Q Consensus 334 ~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 393 (670)
--.+..-|.+.|.+..|+.-|+.+.+. +.+........+..+|.+.|..++|..+...+.
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 113455577888888888888888763 333445566677788888888888887766543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0014 Score=52.00 Aligned_cols=80 Identities=16% Similarity=0.262 Sum_probs=46.2
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHH
Q 005905 309 AKNWQKALELYEHMKSIKLK-PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITYSILLVACERKDDVEVGL 386 (670)
Q Consensus 309 ~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~ 386 (670)
.|+++.|..+|+++.+.... ++...+-.+..+|.+.|++++|+.++++ .+ ..|+. .....+..+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 46677777777777655321 1344444567777777777777777766 22 12222 33334455667777777777
Q ss_pred HHHHH
Q 005905 387 MLLSQ 391 (670)
Q Consensus 387 ~~~~~ 391 (670)
++|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77654
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.04 Score=50.60 Aligned_cols=61 Identities=13% Similarity=0.030 Sum_probs=25.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGT--PEVYTIAINCCSQTGDWEFACSVYDDMTK 254 (670)
Q Consensus 194 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 254 (670)
+..+...+...|++++|...|++..+....+. ...+..+...|.+.|++++|...+.+..+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33334444444555555555544443221111 23344444444444444444444444443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.26 Score=48.00 Aligned_cols=183 Identities=12% Similarity=-0.000 Sum_probs=114.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCH-HHH---HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 005905 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH-ITI---GALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228 (670)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~-~t~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 228 (670)
+...+-.....+.+.|++++|.+.|+++... .|+. ... -.+..++.+.++++.|...|++..+........-
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~----yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~ 106 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNR----YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID 106 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH
Confidence 3433444556667899999999999999875 3432 222 3456788999999999999999988643322233
Q ss_pred HHHHHHHHHh--cC---------------CH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005905 229 YTIAINCCSQ--TG---------------DW---EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288 (670)
Q Consensus 229 ~~~li~~~~~--~g---------------~~---~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~ 288 (670)
|...+.+.+. .+ |. .+|+..|++++ .-|=...-..+|...+..+.
T Consensus 107 ~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li---------------~~yP~S~ya~~A~~rl~~l~ 171 (243)
T PRK10866 107 YVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV---------------RGYPNSQYTTDATKRLVFLK 171 (243)
T ss_pred HHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH---------------HHCcCChhHHHHHHHHHHHH
Confidence 3333333321 11 11 23334444444 44444444555555544443
Q ss_pred HCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 005905 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI--KLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358 (670)
Q Consensus 289 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 358 (670)
..= ..---.+..-|.+.|.+..|..-|+.+.+. +.+......-.|+.+|...|..++|......+.
T Consensus 172 ~~l----a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 172 DRL----AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHH----HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 321 111125667788999999999999988864 222344556678899999999999988776654
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.02 Score=59.32 Aligned_cols=90 Identities=9% Similarity=0.021 Sum_probs=52.5
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 005905 162 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 241 (670)
Q Consensus 162 ~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 241 (670)
..+...|++++|+++|++..+.. +-+...|..+..+|.+.|++++|+..++.+.+.. +.+...|..+..+|...|+
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~---P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD---PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 33445566666666666666531 2234455555556666666666666666666554 3445556666666666666
Q ss_pred HHHHHHHHHHHHHC
Q 005905 242 WEFACSVYDDMTKK 255 (670)
Q Consensus 242 ~~~A~~l~~~m~~~ 255 (670)
+++|...|++.++.
T Consensus 86 ~~eA~~~~~~al~l 99 (356)
T PLN03088 86 YQTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666666554
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.17 Score=50.61 Aligned_cols=212 Identities=18% Similarity=0.212 Sum_probs=105.0
Q ss_pred hhHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHhc
Q 005905 75 KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD-----CKLYTTLITTCAKSGKVDAMFEN 149 (670)
Q Consensus 75 ~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-----~~~~~~li~~~~~~g~~~~~~~~ 149 (670)
.++++|..+ |+.....|...+++++|...|.+....-...+ ...|.....+|.+. +++++
T Consensus 29 ~~~e~Aa~~-----------y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~A--- 93 (282)
T PF14938_consen 29 PDYEEAADL-----------YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEA--- 93 (282)
T ss_dssp HHHHHHHHH-----------HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHH---
T ss_pred CCHHHHHHH-----------HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHH---
Confidence 466666665 45667777788888888888876543211111 11222222233222 33332
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHc----CCCC
Q 005905 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA-GQVDRAREVYKMIHKY----NIKG 224 (670)
Q Consensus 150 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~-g~~~~A~~~~~~m~~~----~~~~ 224 (670)
+..|...+..|...|++..|-+++..+ ...|... |+++.|.+.|++..+. + .+
T Consensus 94 ----i~~~~~A~~~y~~~G~~~~aA~~~~~l-----------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~ 151 (282)
T PF14938_consen 94 ----IECYEKAIEIYREAGRFSQAAKCLKEL-----------------AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SP 151 (282)
T ss_dssp ----HHHHHHHHHHHHHCT-HHHHHHHHHHH-----------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT--H
T ss_pred ----HHHHHHHHHHHHhcCcHHHHHHHHHHH-----------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-Ch
Confidence 224445555555555555555444443 2334444 6677777777665432 2 11
Q ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCC--CC-
Q 005905 225 --TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI-----PDEV-FLSALIDFAGHAGKVEAAFEILQEAKNQG--IS- 293 (670)
Q Consensus 225 --~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----p~~~-t~~~li~~~~~~g~~~~A~~i~~~m~~~~--~~- 293 (670)
-..++..+...+.+.|++++|.++|++....-.. .+.. .|-..+-++...|++..|...++...... +.
T Consensus 152 ~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~ 231 (282)
T PF14938_consen 152 HSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS 231 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 0234555666777777777777777776553221 1111 22222334555667777777776665432 21
Q ss_pred -ccHHHHHHHHHHHHhc--CCHHHHHHHHHHHH
Q 005905 294 -VGIISYSSLMGACSNA--KNWQKALELYEHMK 323 (670)
Q Consensus 294 -~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~ 323 (670)
....+...||.+|-.. ..++.|..-|+.+.
T Consensus 232 s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 232 SREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp SHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred cHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 1234455556665432 33556666565554
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.052 Score=54.36 Aligned_cols=147 Identities=17% Similarity=0.174 Sum_probs=75.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHC----CCC-ccHHHHHHH
Q 005905 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA-GKVEAAFEILQEAKNQ----GIS-VGIISYSSL 302 (670)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~-g~~~~A~~i~~~m~~~----~~~-~~~~~~~~l 302 (670)
|...+..|...|++..|-.++.+ +...|... |++++|.+.|++..+. +.. .-..++..+
T Consensus 97 ~~~A~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~ 161 (282)
T PF14938_consen 97 YEKAIEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKA 161 (282)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHH
Confidence 34444556666666665554444 33345555 6777777777766432 211 113455666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC-----CHH-HHHHHHHHHHhCCChhHHHHHHHHHHhC--CCCCC--HHHHHHH
Q 005905 303 MGACSNAKNWQKALELYEHMKSIKLKP-----TVS-TMNALITALCDGDQLPKTMEVLSDMKSL--GLCPN--TITYSIL 372 (670)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~m~~~~~~p-----~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~--~~t~~~l 372 (670)
...+.+.|++++|.++|+++....... ++. .|-..+-++...|+...|.+.|++.... ++..+ ......|
T Consensus 162 A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l 241 (282)
T PF14938_consen 162 ADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDL 241 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHH
Confidence 777788888888888888776532211 121 1222333455567777777777776642 23222 2344455
Q ss_pred HHHHHh--cCCHHHHHHHHH
Q 005905 373 LVACER--KDDVEVGLMLLS 390 (670)
Q Consensus 373 l~a~~~--~g~~~~a~~~~~ 390 (670)
+.+|-. ...++.++.-|+
T Consensus 242 ~~A~~~~D~e~f~~av~~~d 261 (282)
T PF14938_consen 242 LEAYEEGDVEAFTEAVAEYD 261 (282)
T ss_dssp HHHHHTT-CCCHHHHCHHHT
T ss_pred HHHHHhCCHHHHHHHHHHHc
Confidence 666532 233444444443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.066 Score=58.12 Aligned_cols=63 Identities=14% Similarity=0.057 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 394 (670)
+...|.++...+...|++++|...|++.... .|+...|..+...|...|+.++|...+++...
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455555555555566666666666666653 35666666666666666666666666666555
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0029 Score=50.22 Aligned_cols=12 Identities=8% Similarity=0.254 Sum_probs=4.0
Q ss_pred HHhcCCHHHHHH
Q 005905 306 CSNAKNWQKALE 317 (670)
Q Consensus 306 ~~~~g~~~~A~~ 317 (670)
|.+.|++++|.+
T Consensus 68 ~~~l~~y~eAi~ 79 (84)
T PF12895_consen 68 LLKLGKYEEAIK 79 (84)
T ss_dssp HHHTT-HHHHHH
T ss_pred HHHhCCHHHHHH
Confidence 333333333333
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.037 Score=50.61 Aligned_cols=80 Identities=14% Similarity=0.119 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHH
Q 005905 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP--DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304 (670)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~ 304 (670)
..|..+...+...|++++|+..|++.......+ ...++..+..++...|+.++|...++...+.. +.....++.+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 344555555555566666666666555442221 12345555555566666666666665555432 222333444444
Q ss_pred HHH
Q 005905 305 ACS 307 (670)
Q Consensus 305 ~~~ 307 (670)
.|.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 444
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.052 Score=49.81 Aligned_cols=95 Identities=15% Similarity=0.102 Sum_probs=71.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 005905 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231 (670)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 231 (670)
....+..+...|...|++++|+..|++....... .++ ...+..+...+.+.|++++|...+.+..+.. +.+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEED-PNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 3456777888899999999999999998764211 121 3577888889999999999999999988864 445677777
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 005905 232 AINCCSQTGDWEFACSVY 249 (670)
Q Consensus 232 li~~~~~~g~~~~A~~l~ 249 (670)
+..+|...|+...+..-+
T Consensus 112 lg~~~~~~g~~~~a~~~~ 129 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQ 129 (172)
T ss_pred HHHHHHHcCChHhHhhCH
Confidence 888888888765554433
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.035 Score=50.79 Aligned_cols=94 Identities=15% Similarity=0.081 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005905 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 232 (670)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p-d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 232 (670)
...|..+...+...|++++|+..|++....... .+ ...++..+...+...|++++|...++...... +....+++.+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~-~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID-PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 345566666777778888888888777653100 11 12466667777777788888888777776653 3334555555
Q ss_pred HHHHH-------hcCCHHHHHHHH
Q 005905 233 INCCS-------QTGDWEFACSVY 249 (670)
Q Consensus 233 i~~~~-------~~g~~~~A~~l~ 249 (670)
...|. ..|+++.|+..+
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~ 136 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWF 136 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHH
Confidence 55555 455555444333
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0069 Score=45.70 Aligned_cols=63 Identities=21% Similarity=0.298 Sum_probs=46.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC--CCCHHHHHHHH
Q 005905 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLM 99 (670)
Q Consensus 35 l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~y~~li 99 (670)
+++.|++++|+++|+++.... |.+..+...+...+.+.|++++|.++++.+. .|+...|..++
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 457888999999999988877 7777766678888888888888888888774 45544444443
|
... |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.92 Score=45.96 Aligned_cols=110 Identities=13% Similarity=0.113 Sum_probs=76.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh
Q 005905 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308 (670)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~ 308 (670)
.+.-|.-+...|+...|.++-.+. . .||...|-..+.+++..+++++-.++-.. . -++.-|-.++.+|.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHH
Confidence 344455666778877777776554 2 36888888888888888888877665432 1 124677788888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 005905 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358 (670)
Q Consensus 309 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 358 (670)
.|+..+|..+...+. +..-+..|.++|++.+|.+.--+..
T Consensus 250 ~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 250 YGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred CCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 888888887776622 2456677888888888877654443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.065 Score=47.32 Aligned_cols=89 Identities=8% Similarity=-0.093 Sum_probs=44.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCH
Q 005905 233 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312 (670)
Q Consensus 233 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 312 (670)
..-+...|++++|..+|+-+...... +..-|-.|--+|-..|++++|...|....... +-|+..+-.+..++...|+.
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCH
Confidence 33344555555555555555544332 33444444445555555555555555555444 23444444455555555555
Q ss_pred HHHHHHHHHHH
Q 005905 313 QKALELYEHMK 323 (670)
Q Consensus 313 ~~A~~~~~~m~ 323 (670)
+.|++-|+...
T Consensus 120 ~~A~~aF~~Ai 130 (157)
T PRK15363 120 CYAIKALKAVV 130 (157)
T ss_pred HHHHHHHHHHH
Confidence 55555555444
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.11 Score=44.16 Aligned_cols=89 Identities=20% Similarity=0.100 Sum_probs=38.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--ccHHHHHHHHHHHHhc
Q 005905 234 NCCSQTGDWEFACSVYDDMTKKGVIPD--EVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS--VGIISYSSLMGACSNA 309 (670)
Q Consensus 234 ~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~--~~~~~~~~li~~~~~~ 309 (670)
.++-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|..+++........ .+......+..++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 344445555555555555555544322 122333444445555555555555554443111 0111112222344455
Q ss_pred CCHHHHHHHHHHH
Q 005905 310 KNWQKALELYEHM 322 (670)
Q Consensus 310 g~~~~A~~~~~~m 322 (670)
|+.++|...+-..
T Consensus 89 gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 89 GRPKEALEWLLEA 101 (120)
T ss_pred CCHHHHHHHHHHH
Confidence 5555555554443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.56 E-value=1.3 Score=46.60 Aligned_cols=377 Identities=14% Similarity=0.148 Sum_probs=203.5
Q ss_pred hhhHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC--CCCHHHHHHHHH
Q 005905 26 SEQLHSYNRLI---RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMS 100 (670)
Q Consensus 26 ~~~~~~~~~l~---~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~y~~li~ 100 (670)
+-++.+|..|+ +..-++++.+.++++...- |....+-...+..-...++++....+|.+.. .-++..|..-|.
T Consensus 17 P~di~sw~~lire~qt~~~~~~R~~YEq~~~~F--P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQPIDKVRETYEQLVNVF--PSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred CccHHHHHHHHHHHccCCHHHHHHHHHHHhccC--CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 44678899998 4568999999999997654 6555544445555566788999889987643 456777877776
Q ss_pred HHHc-CCCHHH----HHHHHHHHH-HcCCCCCH-HHHHHHHHHHH---hcCCHH------HHHh----c-CC--------
Q 005905 101 VCAS-SKDSEG----AFQVLRLVQ-EAGLKADC-KLYTTLITTCA---KSGKVD------AMFE----N-VK-------- 151 (670)
Q Consensus 101 ~~~~-~g~~~~----A~~~~~~m~-~~g~~pd~-~~~~~li~~~~---~~g~~~------~~~~----~-~~-------- 151 (670)
--.+ .++... ..+.|+-.+ +.|+.+-. ..|+.-+...- ..|.++ .+.+ . ..
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 4433 333333 233444333 34443322 22444333221 223332 2221 0 11
Q ss_pred -CCHHHHHHHHHHHH-------hcCCHHHHHHHHHHHhhCCCCCCCCHHH---------------HHHHHHHHHHcCCHH
Q 005905 152 -PDRVVFNALITACG-------QSGAVDRAFDVLAEMNAEVHPVDPDHIT---------------IGALMKACANAGQVD 208 (670)
Q Consensus 152 -~~~~~~~~li~~~~-------~~g~~~~A~~l~~~m~~~~~~~~pd~~t---------------~~~li~~~~~~g~~~ 208 (670)
.|-..|..=|+... +...+-.|.+++++...--.|+..+..+ |..+|.- -+.+-+.
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w-EksNpL~ 253 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW-EKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH-HhcCCcc
Confidence 12222222222111 1223455666665553321122221111 2222211 1111000
Q ss_pred ---------HHHHHHHHHH-HcCCCCCHHHHHH-------HHHHHHhcCC-------HHHHHHHHHHHHHCCCCCCHHHH
Q 005905 209 ---------RAREVYKMIH-KYNIKGTPEVYTI-------AINCCSQTGD-------WEFACSVYDDMTKKGVIPDEVFL 264 (670)
Q Consensus 209 ---------~A~~~~~~m~-~~~~~~~~~~~~~-------li~~~~~~g~-------~~~A~~l~~~m~~~g~~p~~~t~ 264 (670)
...-+|++.. -.+..| .+|.- .-+.+...|+ -+++..+++.....-...+..+|
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~p--eiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYHP--EIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111 112222 22211 1122333343 34455555554443222233344
Q ss_pred HHHHHHHHhc---CChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHH
Q 005905 265 SALIDFAGHA---GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-TVSTMNALITA 340 (670)
Q Consensus 265 ~~li~~~~~~---g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~ 340 (670)
..+.+.--.. ...+....++..+...-..--..+|..+|..-.+..-++.|+.+|.+.++.+..+ ++..+++++.-
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 4333221111 1255566666666554322234678888888889999999999999999887776 78888999987
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHH
Q 005905 341 LCDGDQLPKTMEVLSDMKSLGLCPNTITY-SILLVACERKDDVEVGLMLLSQAKEDGVIPN--LVMFKCIIGM 410 (670)
Q Consensus 341 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~ 410 (670)
|| .++..-|.++|+--.+. -+|.-.| ...++-+.+.++-..+..+|++....++.|| ..+|..+|+-
T Consensus 412 ~c-skD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~y 481 (656)
T KOG1914|consen 412 YC-SKDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEY 481 (656)
T ss_pred Hh-cCChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHH
Confidence 77 46788999999875542 3444333 4667778899999999999999998866655 4677777763
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.14 Score=55.74 Aligned_cols=145 Identities=10% Similarity=-0.074 Sum_probs=102.2
Q ss_pred CCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHH
Q 005905 221 NIKGTPEVYTIAINCCSQTG-----DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG--------KVEAAFEILQEA 287 (670)
Q Consensus 221 ~~~~~~~~~~~li~~~~~~g-----~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g--------~~~~A~~i~~~m 287 (670)
..+.+...|...+.+..... +...|..+|++..+.... +...|..+..++.... ++..+.+.....
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 44667888999888865432 367899999999887543 4455555544443321 123334444433
Q ss_pred HHC-CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH
Q 005905 288 KNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366 (670)
Q Consensus 288 ~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 366 (670)
... ....+..+|.++.-.+...|++++|...|++..+.. |+...|..+...|...|+.++|.+.+++... +.|..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~ 486 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGE 486 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCC
Confidence 332 234456778878777777899999999999998874 6888999999999999999999999999876 46666
Q ss_pred HHHH
Q 005905 367 ITYS 370 (670)
Q Consensus 367 ~t~~ 370 (670)
.||.
T Consensus 487 pt~~ 490 (517)
T PRK10153 487 NTLY 490 (517)
T ss_pred chHH
Confidence 6654
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.63 Score=44.31 Aligned_cols=141 Identities=13% Similarity=0.133 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHH----
Q 005905 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL---- 302 (670)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~l---- 302 (670)
.+.+.++.++...|.+.-...++.+.++...+.+....+.|.+.--+.|+.+.|...|+...+..-..+..+.+.+
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 4556666666666777777777777777665666666677777777777777777777766544323333333322
Q ss_pred -HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHH
Q 005905 303 -MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370 (670)
Q Consensus 303 -i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 370 (670)
...|.-.+++-.|...|.++...+ ..|+..-|.-.-+..-.|+..+|++.++.|.+. .|...+-+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 223444566666666666666554 224444444333444456666666666666653 34443333
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.015 Score=43.85 Aligned_cols=52 Identities=21% Similarity=0.377 Sum_probs=25.9
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255 (670)
Q Consensus 203 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 255 (670)
..|++++|.++|+.+.... +.+..++..+..+|.+.|++++|..+++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455555555555554443 334445555555555555555555555555444
|
... |
| >smart00463 SMR Small MutS-related domain | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.015 Score=45.62 Aligned_cols=77 Identities=17% Similarity=0.230 Sum_probs=56.6
Q ss_pred eeeccccCcchhhHHHHHHHHHHHHHhhhhCCCCCCceEeccCccceeecCCCcchhhhhHhhhHHHHHHHHHhCCCCCC
Q 005905 534 VVVDARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQG 613 (670)
Q Consensus 534 ~~~~~~~~~~~~~~i~~l~~l~~l~~~~~~~~~~p~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~p~~~ 613 (670)
+.+|+++++...|...+..+|...... +.-+.+ .|+||+|.|+..-...++.+|..+|...+.+|..
T Consensus 2 ~~lDLHG~~~~eA~~~l~~~l~~~~~~----~~~~~~---------~II~G~G~~s~~g~~~i~~~l~~~l~~~~~~~~~ 68 (80)
T smart00463 2 WSLDLHGLTVEEALTALDKFLNNARLK----GLEQKL---------VIITGKGKHSLGGKSGVKPALKEHLRVESFRFAE 68 (80)
T ss_pred CeEEcCCCCHHHHHHHHHHHHHHHHHc----CCCceE---------EEEEcccCCCccchhhHHHHHHhchhhcccccCC
Confidence 468999999999988877777766643 211222 6889999987633345999999999999999986
Q ss_pred CCccceEEec
Q 005905 614 NGSYGKIRIN 623 (670)
Q Consensus 614 ~~~~g~~~~~ 623 (670)
+...|.+.+.
T Consensus 69 ~~~~G~~~v~ 78 (80)
T smart00463 69 EGNSGVLVVK 78 (80)
T ss_pred CCCCeEEEEE
Confidence 5333888763
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.057 Score=52.29 Aligned_cols=97 Identities=18% Similarity=0.162 Sum_probs=55.7
Q ss_pred hcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHH
Q 005905 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 352 (670)
Q Consensus 273 ~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 352 (670)
+.+++++|...|.+.++.. +-|.+-|..=..+|++.|.++.|++--+.....+ +.-..+|..|-.+|...|++++|++
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHHHH
Confidence 4556666666666666553 4445555555666666666666666555555443 1134556666666666666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHH
Q 005905 353 VLSDMKSLGLCPNTITYSILL 373 (670)
Q Consensus 353 l~~~m~~~g~~p~~~t~~~ll 373 (670)
.|++..+ +.|+-.+|-.=|
T Consensus 171 aykKaLe--ldP~Ne~~K~nL 189 (304)
T KOG0553|consen 171 AYKKALE--LDPDNESYKSNL 189 (304)
T ss_pred HHHhhhc--cCCCcHHHHHHH
Confidence 6666554 456655554433
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.15 E-value=1.8 Score=43.90 Aligned_cols=84 Identities=14% Similarity=0.143 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005905 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377 (670)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 377 (670)
+.+..|.-+...|+...|.++-.+.+ -|+..-|...|.+|+..+++++-.++... +-.++-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 45555777788999999999988776 68999999999999999999987776432 223488999999999
Q ss_pred hcCCHHHHHHHHHH
Q 005905 378 RKDDVEVGLMLLSQ 391 (670)
Q Consensus 378 ~~g~~~~a~~~~~~ 391 (670)
+.|...+|..+..+
T Consensus 249 ~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 249 KYGNKKEASKYIPK 262 (319)
T ss_pred HCCCHHHHHHHHHh
Confidence 99999999999876
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.023 Score=42.38 Aligned_cols=55 Identities=9% Similarity=0.086 Sum_probs=28.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 304 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
..+.+.|++++|...|+.+.+.. +-+...|..+..++...|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455555555555555555443 12445555555555555555555555555544
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.34 Score=46.04 Aligned_cols=142 Identities=13% Similarity=0.090 Sum_probs=102.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-----
Q 005905 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI----- 268 (670)
Q Consensus 194 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li----- 268 (670)
.+.++..+...|.+.-...++.++.+.+.+.++.....|.+.-.+.||.+.|...|+...+..-+.|..+.+.++
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 345666666778899999999999998877788889999999999999999999999887654444444444433
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005905 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 338 (670)
Q Consensus 269 ~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 338 (670)
..|.-++++..|...+.+....+ +.|+...|.=.-+..-.|+..+|.+..+.|++. .|...+-++++
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred hheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 34556677888888888887765 344444443333344468999999999999976 35554444443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.68 Score=43.74 Aligned_cols=82 Identities=9% Similarity=0.039 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH----HHHHHHH
Q 005905 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT----ITYSILL 373 (670)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll 373 (670)
.+..++.-|=......+|......+.+. =...--.+..-|.+.|.+..|..-++.+.+. -|+. .....++
T Consensus 112 ~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~ 185 (203)
T PF13525_consen 112 EFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLA 185 (203)
T ss_dssp HHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHH
T ss_pred HHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHH
Confidence 3444444555555555555555544421 0011112345566677777777777666653 2332 2345555
Q ss_pred HHHHhcCCHHHH
Q 005905 374 VACERKDDVEVG 385 (670)
Q Consensus 374 ~a~~~~g~~~~a 385 (670)
.++.+.|..+.+
T Consensus 186 ~~y~~l~~~~~a 197 (203)
T PF13525_consen 186 EAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHTT-HHHH
T ss_pred HHHHHhCChHHH
Confidence 666666665533
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.16 Score=45.03 Aligned_cols=59 Identities=15% Similarity=0.155 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005905 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287 (670)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m 287 (670)
+...++..+...|++++|..+...+....+- |...|..+|.+|...|+...|.++|+.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3444455555555666666655555554432 5555555566666666665555555554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.034 Score=41.97 Aligned_cols=59 Identities=17% Similarity=0.169 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHH
Q 005905 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG-DWEFACSVYDDM 252 (670)
Q Consensus 193 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m 252 (670)
+|..+...+...|++++|+..|++..+.+ +.+..+|..+..+|.+.| ++++|++.|++.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 33344444444444444444444444433 223334444444444444 344444444443
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.031 Score=41.61 Aligned_cols=54 Identities=20% Similarity=0.284 Sum_probs=23.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254 (670)
Q Consensus 200 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 254 (670)
.+...|++++|.+.|+.+.+.. +.+...+..+..++.+.|++++|...|+++.+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444444444444444433 23344444444444444444444444444443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.98 E-value=1.5 Score=41.44 Aligned_cols=183 Identities=12% Similarity=0.009 Sum_probs=101.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005905 158 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 237 (670)
Q Consensus 158 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 237 (670)
-.....+.+.|++++|.+.|+.+.....+-+--....-.++.++.+.|+++.|...++...+.-......-+...+.+.+
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~ 88 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLS 88 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHH
Confidence 34455677889999999999999875211111123455677889999999999999998877532211122222222222
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHH
Q 005905 238 QTGDWEFACSVYDDMTKKGVIP---DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314 (670)
Q Consensus 238 ~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 314 (670)
......... ....+... -...+..++.-|=......+|...+..+...= ...--.+..-|.+.|.+..
T Consensus 89 ~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~l----a~~e~~ia~~Y~~~~~y~a 159 (203)
T PF13525_consen 89 YYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRL----AEHELYIARFYYKRGKYKA 159 (203)
T ss_dssp HHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHH----HHHHHHHHHHHHCTT-HHH
T ss_pred HHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcccHHH
Confidence 111111110 00000000 01244555566666666677766666554321 1112246677999999999
Q ss_pred HHHHHHHHHhCCCCCCH----HHHHHHHHHHHhCCChhHHH
Q 005905 315 ALELYEHMKSIKLKPTV----STMNALITALCDGDQLPKTM 351 (670)
Q Consensus 315 A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~ 351 (670)
|..-|+.+.+. -|+. ...-.|+.+|.+.|..+.|.
T Consensus 160 A~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 160 AIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 99999998865 3443 34566788888888877443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.46 Score=40.32 Aligned_cols=87 Identities=15% Similarity=0.134 Sum_probs=44.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC---HHH-HHHHHHHH
Q 005905 303 MGACSNAKNWQKALELYEHMKSIKLKPT--VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN---TIT-YSILLVAC 376 (670)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t-~~~ll~a~ 376 (670)
..++-..|+.++|..+|++....|.... ...+-.+...|...|++++|+.+|++.... .|+ ... ...+..++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHH
Confidence 3445556666666666666665554332 223334455566666666666666665543 132 111 11122345
Q ss_pred HhcCCHHHHHHHHHH
Q 005905 377 ERKDDVEVGLMLLSQ 391 (670)
Q Consensus 377 ~~~g~~~~a~~~~~~ 391 (670)
...|+.++|+..+-.
T Consensus 86 ~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 86 YNLGRPKEALEWLLE 100 (120)
T ss_pred HHCCCHHHHHHHHHH
Confidence 556666666666543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.73 E-value=2.8 Score=42.78 Aligned_cols=270 Identities=12% Similarity=0.046 Sum_probs=135.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhC---CCCCHHHHHHHHHHHHcCCCHH
Q 005905 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSE 109 (670)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~y~~li~~~~~~g~~~ 109 (670)
|...+..++.+|+..+....... |.+..++..-+..+...+++++|.--.+.- .+.....+.-.-+++...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHH
Confidence 34446667888888888877766 555555443334444455565554433221 1111222222333333344444
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhc--CCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHhhCCCC
Q 005905 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN--VKPDRVVFNALI-TACGQSGAVDRAFDVLAEMNAEVHP 186 (670)
Q Consensus 110 ~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~--~~~~~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~~~~ 186 (670)
+|.+.++ |...| ...++ ...++..... -+|...+|-.+- .++.-.|++++|.+.-....+.
T Consensus 135 ~A~~~~~---------~~~~~-~~ana---l~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl--- 198 (486)
T KOG0550|consen 135 EAEEKLK---------SKQAY-KAANA---LPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKL--- 198 (486)
T ss_pred HHHHHhh---------hhhhh-HHhhh---hhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhc---
Confidence 4444433 11111 00000 0001111111 113334444332 4455667777777766665543
Q ss_pred CCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHcCCCCCHH-------------HHHHHHHHHHhcCCHHHHHHHHHH
Q 005905 187 VDPDHITIGALMK--ACANAGQVDRAREVYKMIHKYNIKGTPE-------------VYTIAINCCSQTGDWEFACSVYDD 251 (670)
Q Consensus 187 ~~pd~~t~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~~~~~-------------~~~~li~~~~~~g~~~~A~~l~~~ 251 (670)
.++ ..+..+++ ++.-.++.+.|...|++.++.+ |+.. .+..=-+-..+.|.+..|.+.|.+
T Consensus 199 -d~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yte 274 (486)
T KOG0550|consen 199 -DAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTE 274 (486)
T ss_pred -ccc-hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHH
Confidence 121 12222333 2334566777777777766544 2211 111222334567888888888887
Q ss_pred HHHC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 005905 252 MTKK---GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325 (670)
Q Consensus 252 m~~~---g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 325 (670)
.+.. ++.|+...|.....+..+.|++++|+.--.+..+.+ ..-...|..-..++.-.++|++|.+-|++..+.
T Consensus 275 al~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 275 ALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred hhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7654 345556666666667777888888887777666543 111222323334455566777777777766543
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.21 Score=42.84 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005905 153 DRVVFNALITACGQSGAVDRAFDVLAE 179 (670)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~l~~~ 179 (670)
|..++.++|-++++.|+++....+.+.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~ 27 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKS 27 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 345566666677777776666665544
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.58 Score=45.75 Aligned_cols=100 Identities=17% Similarity=0.085 Sum_probs=53.5
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC---CChhHHHHHHHHHHhCCCCCCHHH-
Q 005905 293 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG---DQLPKTMEVLSDMKSLGLCPNTIT- 368 (670)
Q Consensus 293 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~t- 368 (670)
+-|...|-.|...|...|+++.|..-|....+.. .+|...+..+..++... ..-.++..+|+++... .|+.++
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHH
Confidence 4455666666666666666666666666655443 23444444444443322 2344566666666653 343333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 369 YSILLVACERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 369 ~~~ll~a~~~~g~~~~a~~~~~~m~~~ 395 (670)
...|..++...|++.+|...|+.|.+.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 333334456666666666666666654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.57 E-value=1.1 Score=47.88 Aligned_cols=189 Identities=15% Similarity=0.166 Sum_probs=99.9
Q ss_pred HHHHHHHHHcCCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH
Q 005905 95 FNMLMSVCASSKDSE--GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDR 172 (670)
Q Consensus 95 y~~li~~~~~~g~~~--~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 172 (670)
++..-.+|.+-++.. +-+.-+++|+++|-.|+..... ..|+-.|++.++ ...+-++|.-.+
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA---~~~Ay~gKF~EA--------------AklFk~~G~enR 663 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLA---DVFAYQGKFHEA--------------AKLFKRSGHENR 663 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHH---HHHHhhhhHHHH--------------HHHHHHcCchhh
Confidence 455555666555433 3444567888888778876543 344455555544 344566777777
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005905 173 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK--YNIKGTPEVYTIAINCCSQTGDWEFACSVYD 250 (670)
Q Consensus 173 A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 250 (670)
|+++|.+|+-- -...-+...|..++-..+.++-.+ ++++... +....+...|+.++|..+.-
T Consensus 664 AlEmyTDlRMF------------D~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk----aAAEmLiSaGe~~KAi~i~~ 727 (1081)
T KOG1538|consen 664 ALEMYTDLRMF------------DYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK----AAAEMLISAGEHVKAIEICG 727 (1081)
T ss_pred HHHHHHHHHHH------------HHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH----HHHHHhhcccchhhhhhhhh
Confidence 77777766421 122334445554443333322111 1111111 12233334455555554431
Q ss_pred ------HHHHCCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005905 251 ------DMTKKGV---IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321 (670)
Q Consensus 251 ------~m~~~g~---~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 321 (670)
-+.+.+- ..+..++..+...+.+...+..|-++|..|-.. .+++++....++|.+|..+-+.
T Consensus 728 d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~ 798 (1081)
T KOG1538|consen 728 DHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEK 798 (1081)
T ss_pred cccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhh
Confidence 1111111 113345555555555666777788888776443 2677788888888888888777
Q ss_pred HHhC
Q 005905 322 MKSI 325 (670)
Q Consensus 322 m~~~ 325 (670)
..+.
T Consensus 799 hPe~ 802 (1081)
T KOG1538|consen 799 HPEF 802 (1081)
T ss_pred Cccc
Confidence 6543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.25 Score=48.60 Aligned_cols=99 Identities=20% Similarity=0.128 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHH
Q 005905 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH----ITIGALMKACANAGQVDRAREVYKMIHKYN--IKGTPE 227 (670)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~----~t~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~ 227 (670)
...|+..+..+.+.|++++|+..|+.+... .|+. ..+..+..+|...|++++|...|+.+.+.- -+....
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~----yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~d 218 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKK----YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD 218 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhH
Confidence 345666666666778899999999988875 3442 355667788888899999999988887642 112244
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005905 228 VYTIAINCCSQTGDWEFACSVYDDMTKKG 256 (670)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g 256 (670)
.+-.+...|...|+.++|..+|+++.+..
T Consensus 219 Al~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 219 AMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 55556667778888888888888887764
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.079 Score=47.07 Aligned_cols=70 Identities=20% Similarity=0.304 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh-----CCCCCCHHH
Q 005905 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS-----LGLCPNTIT 368 (670)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t 368 (670)
+...++..+...|++++|..+...+.... +-|...|..+|.+|...|+..+|++.|+++.. .|+.|+..|
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 33445555555666666666666555543 23555566666666666666666666655432 355555444
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.072 Score=40.12 Aligned_cols=58 Identities=12% Similarity=0.169 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC-ChhHHHHHHHH
Q 005905 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD-QLPKTMEVLSD 356 (670)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~l~~~ 356 (670)
+|..+...+...|++++|...|.+..+.. +.+...|..+..+|...| ++++|++.|++
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 33344444444444444444444443332 113333444444444444 34444444443
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.87 Score=44.54 Aligned_cols=101 Identities=15% Similarity=0.087 Sum_probs=52.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHHCCCCccHHHH
Q 005905 223 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA---GKVEAAFEILQEAKNQGISVGIISY 299 (670)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~---g~~~~A~~i~~~m~~~~~~~~~~~~ 299 (670)
+.|...|-.|-..|...|+++.|..-|.+..+...+ +...+..+..++..+ ..-.++..+++++.+.. +.|+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 455566666666666666666666666665544221 333333333333222 12345555555555544 3344444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 005905 300 SSLMGACSNAKNWQKALELYEHMKSI 325 (670)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~m~~~ 325 (670)
..|...+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 44555555555555555555555544
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.37 E-value=2 Score=38.81 Aligned_cols=127 Identities=13% Similarity=0.011 Sum_probs=83.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHH
Q 005905 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG---VIPDEVFL 264 (670)
Q Consensus 188 ~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~t~ 264 (670)
.|+...-..+..+....|+..+|...|.+...--+..|....-.+.++....+++..|...++.+.+.. -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 566666666777777888888888888777764455666777777777777788888888877776643 2333 33
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 005905 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318 (670)
Q Consensus 265 ~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 318 (670)
-.+...+...|+..+|..-|+..... -|+...-.....++++.|+.++|..-
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHH
Confidence 44566677777777777777777664 34443333344556677766555443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.13 Score=49.17 Aligned_cols=105 Identities=16% Similarity=0.201 Sum_probs=58.8
Q ss_pred CCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 005905 188 DPDHITIGALMKACAN-----AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262 (670)
Q Consensus 188 ~pd~~t~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 262 (670)
+.|..+|.+.+..+.. .+.++-....++.|.+.|+..|..+|+.||+.+-+-.- .|..+
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~nv 127 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQNV 127 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHHH
Confidence 4566666666666543 35566666677888888888888888888887654321 11111
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC
Q 005905 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311 (670)
Q Consensus 263 t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~ 311 (670)
.-..++ -|- .+-+-+.+++++|...|+.||..+-..|+.++.+.+.
T Consensus 128 fQ~~F~-HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 128 FQKVFL-HYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHh-hCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 111111 111 1112345556666666666666666666666655554
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.30 E-value=3.9 Score=42.02 Aligned_cols=76 Identities=13% Similarity=0.088 Sum_probs=47.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005905 196 ALMKACANAGQVDRAREVYKMIHKYN---IKGTPEVYTIAINCCSQ---TGDWEFACSVYDDMTKKGVIPDEVFLSALID 269 (670)
Q Consensus 196 ~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~ 269 (670)
.++-+|....+++...++++.+...- +.....+-....-++.+ .|+.++|++++..+......++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44456777777887777777776541 12222333334445555 6788888888877665555667777776665
Q ss_pred HH
Q 005905 270 FA 271 (670)
Q Consensus 270 ~~ 271 (670)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 54
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.27 Score=42.14 Aligned_cols=97 Identities=8% Similarity=-0.002 Sum_probs=64.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005905 295 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374 (670)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 374 (670)
|..++.++|.++++.|+++....+.+..=.. ..+.. ...+. --....+.|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI--~~~~~---------~~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGI--DVNGK---------KKEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCC--CCCCc---------cccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 3456677777777777777777666554321 11100 00000 1112456789999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHH
Q 005905 375 ACERKDDVEVGLMLLSQAKE-DGVIPNLVMFKCIIGMC 411 (670)
Q Consensus 375 a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~ 411 (670)
+|+..|++..|+++.+...+ .+++.+..++..|+.-+
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999987765 68888888888887643
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.38 Score=47.29 Aligned_cols=98 Identities=9% Similarity=0.033 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC----HHHH
Q 005905 296 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT--VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN----TITY 369 (670)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~ 369 (670)
...|...+..+.+.|++++|...|+.+.+.-+... ...+-.+...|...|++++|...|+.+... .|+ ...+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl 220 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHH
Confidence 34455555555566777777777777765422111 235556677777777777777777777653 222 3333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 370 SILLVACERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 370 ~~ll~a~~~~g~~~~a~~~~~~m~~~ 395 (670)
..+...+...|+.++|..+|+.+++.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34445566777888888877777664
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.20 E-value=2.2 Score=45.44 Aligned_cols=131 Identities=14% Similarity=0.127 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcC--CCCHHHHHHHHHHHHhcCC
Q 005905 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENV--KPDRVVFNALITACGQSGA 169 (670)
Q Consensus 92 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~--~~~~~~~~~li~~~~~~g~ 169 (670)
..-.+.+++-+-+.|.++.|+++-.+-. .-.....++|+++.|++.. ..+...|..|.....+.|+
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~ 362 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKELDDPEKWKQLGDEALRQGN 362 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTB
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCC
Confidence 3446777888888888888887653322 2245667888888888743 4578899999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005905 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 249 (670)
Q Consensus 170 ~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 249 (670)
++-|.+.|.+.. -|..++-.|.-.|+.+.-.++-+.....| -+|....++...|+.++..+++
T Consensus 363 ~~lAe~c~~k~~-----------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 363 IELAEECYQKAK-----------DFSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp HHHHHHHHHHCT------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHHHHHHhhc-----------CccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHH
Confidence 999999998864 25567777888899988888888877776 2666667777788888888777
Q ss_pred HH
Q 005905 250 DD 251 (670)
Q Consensus 250 ~~ 251 (670)
.+
T Consensus 426 ~~ 427 (443)
T PF04053_consen 426 IE 427 (443)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.96 E-value=4.5 Score=41.34 Aligned_cols=177 Identities=15% Similarity=0.101 Sum_probs=104.3
Q ss_pred CCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 005905 189 PDHITIGALM-KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN--CCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265 (670)
Q Consensus 189 pd~~t~~~li-~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 265 (670)
|...++..+- .++.-.|++++|..+--.+.+.+ .. ..+...++ ++.-.++.+.|...|.+-+..+ |+...-
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~--n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~s- 239 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-AT--NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKS- 239 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cc--hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhH-
Confidence 4344444332 24556778888877776666654 21 23333333 2334567777777777766553 332221
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHH
Q 005905 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK---LKPTVSTMNALITALC 342 (670)
Q Consensus 266 ~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~ 342 (670)
+..-...+.+..+...| ....+.|++..|.+.|.+..... ..|+...|........
T Consensus 240 ---------k~~~~~~k~le~~k~~g------------N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~ 298 (486)
T KOG0550|consen 240 ---------KSASMMPKKLEVKKERG------------NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNI 298 (486)
T ss_pred ---------HhHhhhHHHHHHHHhhh------------hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhc
Confidence 11112223333444444 23458899999999998877543 3456666777777788
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHCC
Q 005905 343 DGDQLPKTMEVLSDMKSLGLCPNTITYSIL---LVACERKDDVEVGLMLLSQAKEDG 396 (670)
Q Consensus 343 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l---l~a~~~~g~~~~a~~~~~~m~~~g 396 (670)
+.|+..+|+.--++... .|..-.-.+ ..++.-.+++++|++-|+...+..
T Consensus 299 rLgrl~eaisdc~~Al~----iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 299 RLGRLREAISDCNEALK----IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred ccCCchhhhhhhhhhhh----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 89999999887776654 333222222 234556688888988888777643
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.16 Score=38.76 Aligned_cols=54 Identities=13% Similarity=0.118 Sum_probs=26.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 305 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
.|.+.+++++|.++++.+...++ .+...|......|.+.|++++|.+.|++..+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34445555555555555544432 2444444444555555555555555555444
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.23 Score=37.79 Aligned_cols=52 Identities=19% Similarity=0.256 Sum_probs=21.1
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254 (670)
Q Consensus 202 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 254 (670)
.+.++++.|.++++.+...+ +.++..|.....+|.+.|++++|...|+...+
T Consensus 6 ~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 6 LQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33444444444444444332 22333333344444444444444444444433
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.23 Score=47.59 Aligned_cols=33 Identities=27% Similarity=0.299 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 005905 349 KTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381 (670)
Q Consensus 349 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 381 (670)
=++.++++|...|+.||..+-..|++++++.+-
T Consensus 141 C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 141 CAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 356677777777777777777777777766654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.63 E-value=1.3 Score=47.51 Aligned_cols=90 Identities=8% Similarity=0.066 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHH--------
Q 005905 296 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI-------- 367 (670)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------- 367 (670)
..+.-.+...+.+...+..|-++|.+|-. ..++++.+...+++++|..+-+...+ +.||..
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLA 815 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhh
Confidence 44555555556677778889999988763 23577888899999999999887665 344432
Q ss_pred ---HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005905 368 ---TYSILLVACERKDDVEVGLMLLSQAKEDG 396 (670)
Q Consensus 368 ---t~~~ll~a~~~~g~~~~a~~~~~~m~~~g 396 (670)
-|.-.-.||.++|+-.+|.++++++....
T Consensus 816 E~DrFeEAqkAfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred hhhhHHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 24445578889999999999998876543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.87 Score=46.11 Aligned_cols=130 Identities=19% Similarity=0.043 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHH----HCC-CCccHH
Q 005905 228 VYTIAINCCSQTGDWEFACSVYDDMT----KKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAK----NQG-ISVGII 297 (670)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~l~~~m~----~~g~~-p~~~t~~~li~~~~~~g~~~~A~~i~~~m~----~~~-~~~~~~ 297 (670)
.|..|-+.|.-.|+++.|+...+.-+ +-|-+ .....++.+-.++.-.|.++.|.+.|+... +.| -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 34444455555566666665443322 11111 112345555555566666666666555432 122 112233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 005905 298 SYSSLMGACSNAKNWQKALELYEHMKSI-----KLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357 (670)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 357 (670)
..-+|...|.-..++++|+..+.+-... +..-...++-+|..+|...|..++|+.+.+.-
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4445555555555666666555432210 00113344555556666666666665555443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.53 E-value=1.2 Score=45.26 Aligned_cols=281 Identities=16% Similarity=0.072 Sum_probs=162.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHhhhhhHHHHHHHhhh-------CCC--CCHHHHHHHHHH
Q 005905 33 NRLIRQGRISECIDLLEDMERKGLLDM--DKVYHARFFNVCKSQKAIKEAFRFFKL-------VPN--PTLSTFNMLMSV 101 (670)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~g~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~-------~~~--~~~~~y~~li~~ 101 (670)
..|++.|+.+.-+.+|+...+.|.... -..++..+..++.-.+++++|+++... +-. -...+...|.+.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 567899999999999999999985321 233455566777778899999987532 110 112233344445
Q ss_pred HHcCCCHHHHHHHHHHHH----HcCC-CCCHHHHHHHHHHHHhcCCHHH---HHh-cCCCCHHHHHHHHHHHHhcCCHHH
Q 005905 102 CASSKDSEGAFQVLRLVQ----EAGL-KADCKLYTTLITTCAKSGKVDA---MFE-NVKPDRVVFNALITACGQSGAVDR 172 (670)
Q Consensus 102 ~~~~g~~~~A~~~~~~m~----~~g~-~pd~~~~~~li~~~~~~g~~~~---~~~-~~~~~~~~~~~li~~~~~~g~~~~ 172 (670)
+--.|.+++|+-...+-+ +.|- ......+-.|-+.|...|+--. ..+ +-.++.++ . .++.
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~-~----------al~~ 173 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVT-S----------ALEN 173 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHH-H----------HHHH
Confidence 555666777654432211 1120 1122334445555655443211 111 11111111 1 1334
Q ss_pred HHHHHHHHhhCC--CC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCC-CCHHHHHHHHHHHHhcCCHHH
Q 005905 173 AFDVLAEMNAEV--HP-VDPDHITIGALMKACANAGQVDRAREVYKMIHK----YNIK-GTPEVYTIAINCCSQTGDWEF 244 (670)
Q Consensus 173 A~~l~~~m~~~~--~~-~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~-~~~~~~~~li~~~~~~g~~~~ 244 (670)
|.++|.+=.+.. .| --.....|..+.+.|.-.|+++.|+..++.-.. .|-. .....+..+.+++.-.|+++.
T Consensus 174 Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~ 253 (639)
T KOG1130|consen 174 AVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFEL 253 (639)
T ss_pred HHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHh
Confidence 444443321110 00 011223566677777778999999988764332 2211 123467778889999999999
Q ss_pred HHHHHHHHHH----CCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCCccHHHHHHHHHHHHhcCCHHH
Q 005905 245 ACSVYDDMTK----KGV-IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ-----GISVGIISYSSLMGACSNAKNWQK 314 (670)
Q Consensus 245 A~~l~~~m~~----~g~-~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~-----~~~~~~~~~~~li~~~~~~g~~~~ 314 (670)
|.+.|+.-.. .|- ........+|-..|.-...+++|+.+|..-... ...-....|-+|..+|...|..++
T Consensus 254 A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~k 333 (639)
T KOG1130|consen 254 AIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRK 333 (639)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHH
Confidence 9999876542 221 123345566777888888889998887653321 112235667789999999999999
Q ss_pred HHHHHHHHHh
Q 005905 315 ALELYEHMKS 324 (670)
Q Consensus 315 A~~~~~~m~~ 324 (670)
|..+.+.-.+
T Consensus 334 Al~fae~hl~ 343 (639)
T KOG1130|consen 334 ALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHH
Confidence 9987776543
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.16 E-value=4.5 Score=40.52 Aligned_cols=130 Identities=18% Similarity=0.293 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC----ChHHHHHHHHHHHHCCC---CccHHHHHHHHHHHHhcCC-
Q 005905 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGH--AG----KVEAAFEILQEAKNQGI---SVGIISYSSLMGACSNAKN- 311 (670)
Q Consensus 242 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~--~g----~~~~A~~i~~~m~~~~~---~~~~~~~~~li~~~~~~g~- 311 (670)
+++.+.+++.|.+.|..-+..+|-+....... .. ....|..+|+.|++... .++-..+..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34566777888888888777666553333322 22 24567888888887642 3344555555544 3333
Q ss_pred ---HHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhCC-C--hhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005905 312 ---WQKALELYEHMKSIKLKPTVS-TMNALITALCDGD-Q--LPKTMEVLSDMKSLGLCPNTITYSILL 373 (670)
Q Consensus 312 ---~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g-~--~~~A~~l~~~m~~~g~~p~~~t~~~ll 373 (670)
.+.++.+|+.+.+.|+.++-. -+.+-|-++.... . ..++.++++.+.+.|+++....|..+-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 456677777777766654432 2222233333221 1 446778888888888887777766443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.14 Score=39.70 Aligned_cols=62 Identities=23% Similarity=0.297 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC---CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005905 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPV---DPD-HITIGALMKACANAGQVDRAREVYKMI 217 (670)
Q Consensus 156 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~---~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m 217 (670)
+|+.+...|...|++++|+..|++........ .|+ ..++..+...|...|++++|++.+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45556666666666666666666554320001 111 234444555555555555555555544
|
... |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.06 E-value=2.5 Score=37.06 Aligned_cols=84 Identities=12% Similarity=0.098 Sum_probs=42.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005905 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275 (670)
Q Consensus 196 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g 275 (670)
.++..+...+.......+++.+...+ ..+...+|.++..|++.. ..+.++.+.. ..+......++..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 45555555566666666666665554 345556666666666543 2333333331 012223334555555555
Q ss_pred ChHHHHHHHHHH
Q 005905 276 KVEAAFEILQEA 287 (670)
Q Consensus 276 ~~~~A~~i~~~m 287 (670)
.++++..++..+
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 555555555443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.76 Score=47.83 Aligned_cols=65 Identities=11% Similarity=-0.028 Sum_probs=53.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005905 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH----ITIGALMKACANAGQVDRAREVYKMIHKY 220 (670)
Q Consensus 152 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~----~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 220 (670)
.+...|+.+..+|.+.|++++|+..|++..+. .|+. .+|..+..+|...|++++|+..+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46778888999999999999999999988764 5664 35888888888999999999988888775
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.00 E-value=3.3 Score=36.24 Aligned_cols=85 Identities=15% Similarity=0.205 Sum_probs=45.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc
Q 005905 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309 (670)
Q Consensus 230 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~ 309 (670)
..++..+.+.+.+.....+++.+...+. .+...++.++..|++... ....+.+.. . ++..-...++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHHHHHHHHc
Confidence 3455566666666777777776666653 455666667766665432 223333331 1 1122223455556666
Q ss_pred CCHHHHHHHHHHH
Q 005905 310 KNWQKALELYEHM 322 (670)
Q Consensus 310 g~~~~A~~~~~~m 322 (670)
+.++++..++.++
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 6666666666554
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.18 Score=39.04 Aligned_cols=61 Identities=20% Similarity=0.289 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CC-HHHHHHHHHHHHhCCChhHHHHHHHHH
Q 005905 297 ISYSSLMGACSNAKNWQKALELYEHMKSI----KLK-PT-VSTMNALITALCDGDQLPKTMEVLSDM 357 (670)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-p~-~~~~~~li~~~~~~g~~~~A~~l~~~m 357 (670)
.+|+.+...|...|++++|...|++..+. |.. |+ ..+++.+...|...|++++|++.+++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555555555555555555555554321 100 11 334444444555555555555555443
|
... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=93.91 E-value=1.2 Score=46.39 Aligned_cols=63 Identities=11% Similarity=0.023 Sum_probs=39.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 295 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV----STMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
+...++.+..+|.+.|++++|...|++..+.. |+. .+|..+..+|...|+.++|++.|++..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566666666666666666666666655543 332 3466666666666666666666666665
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.88 E-value=7.8 Score=38.83 Aligned_cols=136 Identities=16% Similarity=0.267 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 005905 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAK--SGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185 (670)
Q Consensus 108 ~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~--~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 185 (670)
+++.+.+++.|.+.|+.-+.++|-+..-.... ..+.+. ...+|..+|+.|++..+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~-----------------------~~~ra~~iy~~mKk~H~ 134 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDE-----------------------IIQRAKEIYKEMKKKHP 134 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHH-----------------------HHHHHHHHHHHHHHhCc
Confidence 34556788999999998888777653333222 112221 26789999999998732
Q ss_pred CC-CCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHHCC
Q 005905 186 PV-DPDHITIGALMKACANAGQ----VDRAREVYKMIHKYNIKGTP--EVYTIAINCCSQTGD--WEFACSVYDDMTKKG 256 (670)
Q Consensus 186 ~~-~pd~~t~~~li~~~~~~g~----~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g 256 (670)
.+ .++...+..++.. ...+ .+.++.+|+.+.+.|+..+- .....++........ ...+.++++.+.+.|
T Consensus 135 fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~ 212 (297)
T PF13170_consen 135 FLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNG 212 (297)
T ss_pred cccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcC
Confidence 22 3455666666544 2333 46678888888887766432 233333333322222 347888889999999
Q ss_pred CCCCHHHHHHHH
Q 005905 257 VIPDEVFLSALI 268 (670)
Q Consensus 257 ~~p~~~t~~~li 268 (670)
+++....|..+.
T Consensus 213 ~kik~~~yp~lG 224 (297)
T PF13170_consen 213 VKIKYMHYPTLG 224 (297)
T ss_pred CccccccccHHH
Confidence 888777776554
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.47 E-value=5.4 Score=43.08 Aligned_cols=16 Identities=25% Similarity=0.327 Sum_probs=12.6
Q ss_pred HhcCCHHHHHHHHHHH
Q 005905 36 IRQGRISECIDLLEDM 51 (670)
Q Consensus 36 ~~~g~~~~A~~l~~~m 51 (670)
.=++++++|.++|+.-
T Consensus 7 flnn~~~eAe~~l~~~ 22 (468)
T PF10300_consen 7 FLNNRFKEAEELLSPR 22 (468)
T ss_pred HHCCCHHHHHHHHHhc
Confidence 3478999999999854
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.33 E-value=5.3 Score=39.67 Aligned_cols=151 Identities=11% Similarity=0.009 Sum_probs=99.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHH----HHHHHHHhcCCHH
Q 005905 238 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS----SLMGACSNAKNWQ 313 (670)
Q Consensus 238 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~----~li~~~~~~g~~~ 313 (670)
..|...+|-..++++++.-+ -|...+...-++|.-.|+.+.-...++.+... ..+|...|. .+.-++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~P-tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYP-TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhCc-hhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 46777777778888877643 37777777777888888888888777777654 233433333 3333445788899
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005905 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL---GLCPNTITYSILLVACERKDDVEVGLMLLS 390 (670)
Q Consensus 314 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 390 (670)
+|++.-++..+.+ +.|..+-.+....+-..|+.+++.++..+-... +-..-...|....-.+...+.++.|+.+|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9988888877665 447777777888888888898888877654321 101111223333334556688899999985
Q ss_pred H
Q 005905 391 Q 391 (670)
Q Consensus 391 ~ 391 (670)
.
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 4
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.79 Score=40.81 Aligned_cols=21 Identities=19% Similarity=0.450 Sum_probs=8.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 005905 230 TIAINCCSQTGDWEFACSVYD 250 (670)
Q Consensus 230 ~~li~~~~~~g~~~~A~~l~~ 250 (670)
..|..+|-..+++++|...|.
T Consensus 75 ~GLaa~~Q~~k~y~~Ai~~Y~ 95 (165)
T PRK15331 75 MGLAAVCQLKKQFQKACDLYA 95 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444433
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.13 E-value=2.5 Score=43.10 Aligned_cols=139 Identities=12% Similarity=-0.008 Sum_probs=89.2
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005905 99 MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLA 178 (670)
Q Consensus 99 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 178 (670)
.+.+.+.|++..|...|++.+.. +. |.+.-+.++.-.....-..+++.+..+|.+.+++..|++.-.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~-l~------------~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~ 281 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF-LE------------YRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCN 281 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH-hh------------ccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHH
Confidence 34677888888888888876642 10 000000111111112234566777888888888889988888
Q ss_pred HHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH
Q 005905 179 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF-ACSVYDDMTK 254 (670)
Q Consensus 179 ~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~ 254 (670)
..+..+ ++|.-..---..+|...|+++.|+..|+.+.+.. +.|..+-+.++.+-.+.....+ ..++|..|..
T Consensus 282 kvLe~~---~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 282 KVLELD---PNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHhcC---CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 887652 4555666666778888889999999998888865 5555666666666555554443 3677777764
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.04 E-value=7.7 Score=36.22 Aligned_cols=221 Identities=17% Similarity=0.088 Sum_probs=129.9
Q ss_pred CCHHHHHHHHHHHhhCCCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHH
Q 005905 168 GAVDRAFDVLAEMNAEVHPVDP---DHITIGALMKACANAGQVDRAREVYKMIHKY-NIKGTPEVYTIAINCCSQTGDWE 243 (670)
Q Consensus 168 g~~~~A~~l~~~m~~~~~~~~p---d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~ 243 (670)
+....+...+...... .+ ....+......+...+.+..+...+...... ........+......+...+++.
T Consensus 37 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (291)
T COG0457 37 GELAEALELLEEALEL----LPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYE 112 (291)
T ss_pred hhHHHHHHHHHHHHhc----CccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHH
Confidence 3445555555555442 22 2355556666666777777777766665542 22334455666666666667777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHHHHCCC--CccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005905 244 FACSVYDDMTKKGVIPDEVFLSALID-FAGHAGKVEAAFEILQEAKNQGI--SVGIISYSSLMGACSNAKNWQKALELYE 320 (670)
Q Consensus 244 ~A~~l~~~m~~~g~~p~~~t~~~li~-~~~~~g~~~~A~~i~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~ 320 (670)
.+...+.........+. ........ .+...|+++.|...+........ ......+......+...++.+.|...+.
T Consensus 113 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 191 (291)
T COG0457 113 EALELLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLE 191 (291)
T ss_pred HHHHHHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHH
Confidence 77777777665443331 11222222 56677777777777777754221 1233444444445667778888888887
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 321 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 395 (670)
.............+..+-..+...++.+.|...+...... .|+ ...+..+...+...+..+++...+....+.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 192 KALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7765431113566777777777777888888888877763 343 334444444444666777787777766654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=92.91 E-value=5.5 Score=35.59 Aligned_cols=93 Identities=13% Similarity=0.044 Sum_probs=70.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005905 159 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 238 (670)
Q Consensus 159 ~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 238 (670)
.....+-+.|++++|..+|.-+..-+ .. |..-|..|..+|-..+++++|...|......+ ..|+..+-....+|..
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~--n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~ 117 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYD-FY--NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHH
Confidence 34445668999999999999887642 11 23344556666677899999999998776655 3455556667889999
Q ss_pred cCCHHHHHHHHHHHHHC
Q 005905 239 TGDWEFACSVYDDMTKK 255 (670)
Q Consensus 239 ~g~~~~A~~l~~~m~~~ 255 (670)
.|+.+.|...|....+.
T Consensus 118 l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 118 MRKAAKARQCFELVNER 134 (165)
T ss_pred hCCHHHHHHHHHHHHhC
Confidence 99999999999988873
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=92.67 E-value=7.7 Score=35.25 Aligned_cols=99 Identities=13% Similarity=0.058 Sum_probs=51.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHH
Q 005905 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK---LKPTVSTMN 335 (670)
Q Consensus 259 p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~ 335 (670)
|+...-..|..+....|+..+|...|.+...--+.-|....-.+.++....++...|...++++-+.. -.|| +.-
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chH
Confidence 44444444555555556666666655555544444455555555555555556666655555554432 1122 223
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHh
Q 005905 336 ALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 336 ~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
.+...|...|++.+|..-|+....
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHH
Confidence 344555555666556665555554
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.51 E-value=14 Score=37.74 Aligned_cols=144 Identities=17% Similarity=0.127 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHhhCCCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005905 170 VDRAFDVLAEMNAEVHPVDPDHITI-GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248 (670)
Q Consensus 170 ~~~A~~l~~~m~~~~~~~~pd~~t~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 248 (670)
...|...-.+..+ +.||.+-- ..-..++.+.|++.++-.+++.+-+....| ..+. +..+.+.|+- ++.-
T Consensus 245 p~~Ar~~A~~a~K----L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP--~ia~--lY~~ar~gdt--a~dR 314 (531)
T COG3898 245 PASARDDALEANK----LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP--DIAL--LYVRARSGDT--ALDR 314 (531)
T ss_pred hHHHHHHHHHHhh----cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh--HHHH--HHHHhcCCCc--HHHH
Confidence 4445554444443 35553322 223457788888888888888887764333 3332 2334455653 2222
Q ss_pred HHHHHH-CCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhC
Q 005905 249 YDDMTK-KGVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS-NAKNWQKALELYEHMKSI 325 (670)
Q Consensus 249 ~~~m~~-~g~~p-~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~ 325 (670)
++...+ ...+| +....-.+..+....|++..|..--+...+ ..|....|-.|.+.-. ..|+-.++...+.+..+.
T Consensus 315 lkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 315 LKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 222211 01122 445666677777888888887766665554 3566777777766554 448999999888887764
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.20 E-value=6 Score=40.90 Aligned_cols=151 Identities=15% Similarity=0.162 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHH
Q 005905 226 PEVYTIAINCCSQTGDWEFACSVYDDMTKKG-VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304 (670)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~ 304 (670)
..+|...|+...+..-++.|..+|-+..+.+ +.++...++++|..++ .|+...|..+|+.-...- +-+..--+-.+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f-~d~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF-PDSTLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 4789999999999999999999999999998 6788889999998665 678889999998755542 222333346677
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 005905 305 ACSNAKNWQKALELYEHMKSIKLKPT--VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381 (670)
Q Consensus 305 ~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 381 (670)
-+...++-+.|..+|+...+. +..+ ...|..||.--..-|+...+..+=++|.+ +.|-.-+.....+-|.-..+
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ik~d 550 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYAIKAD 550 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHhhhcc
Confidence 788999999999999954421 1122 56899999999999999999999999987 46776666666666654433
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=92.02 E-value=7.1 Score=33.33 Aligned_cols=84 Identities=14% Similarity=0.153 Sum_probs=56.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005905 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387 (670)
Q Consensus 308 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 387 (670)
.||++......+-.+- .+....+.-+..+...|+-+.-.+++.++.+. -.|+......+..||.+.|+..++-+
T Consensus 68 ~C~NlKrVi~C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~e 141 (161)
T PF09205_consen 68 KCGNLKRVIECYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANE 141 (161)
T ss_dssp G-S-THHHHHHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred hhcchHHHHHHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHH
Confidence 4555555555554332 35556677788888999999999999988763 37888888899999999999999999
Q ss_pred HHHHHHHCCC
Q 005905 388 LLSQAKEDGV 397 (670)
Q Consensus 388 ~~~~m~~~g~ 397 (670)
++.++-+.|+
T Consensus 142 ll~~ACekG~ 151 (161)
T PF09205_consen 142 LLKEACEKGL 151 (161)
T ss_dssp HHHHHHHTT-
T ss_pred HHHHHHHhch
Confidence 9999988885
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=91.94 E-value=18 Score=37.76 Aligned_cols=71 Identities=14% Similarity=0.127 Sum_probs=48.4
Q ss_pred HHhhhhhHHHHHHHhhhC----C---C-----------CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC----CCH
Q 005905 70 VCKSQKAIKEAFRFFKLV----P---N-----------PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK----ADC 127 (670)
Q Consensus 70 ~~~~~~~~~~A~~~~~~~----~---~-----------~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~----pd~ 127 (670)
.+.+.+.++.|++.+..- . . +|-..=+..+..+...|++.++..++++|...=++ -|.
T Consensus 88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~ 167 (549)
T PF07079_consen 88 VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNS 167 (549)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccH
Confidence 345677788887775421 1 1 12222355667888899999999999888875443 688
Q ss_pred HHHHHHHHHHHhc
Q 005905 128 KLYTTLITTCAKS 140 (670)
Q Consensus 128 ~~~~~li~~~~~~ 140 (670)
.+|+.++-+++++
T Consensus 168 d~yd~~vlmlsrS 180 (549)
T PF07079_consen 168 DMYDRAVLMLSRS 180 (549)
T ss_pred HHHHHHHHHHhHH
Confidence 8998877776654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=91.85 E-value=7.6 Score=39.05 Aligned_cols=167 Identities=12% Similarity=0.042 Sum_probs=100.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----CCHH
Q 005905 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD---HITIGALMKACANAGQVDRAREVYKMIHKYNIK-----GTPE 227 (670)
Q Consensus 156 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd---~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----~~~~ 227 (670)
.|-.+-+++-+.-++.+++.+-..-... .|..|. .....++..++...+.++++++.|+...+.... ....
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~l-pgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGL-PGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcC-CCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 3445555555555666666655444332 222331 123345667888888899999998876553211 1235
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHHH-----HHHHHHHhcCChHHHHHHHHHHHH----CCCCc
Q 005905 228 VYTIAINCCSQTGDWEFACSVYDDMTK----KGVIPDEVFLS-----ALIDFAGHAGKVEAAFEILQEAKN----QGISV 294 (670)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~~t~~-----~li~~~~~~g~~~~A~~i~~~m~~----~~~~~ 294 (670)
+|..|-+.|.+..|+++|.-+..+..+ .++.--..-|. .|.-++...|.+..|.+.-++..+ .|-.+
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 788899999999999988776655432 23331122232 233456677888777777776543 34222
Q ss_pred -cHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005905 295 -GIISYSSLMGACSNAKNWQKALELYEHMK 323 (670)
Q Consensus 295 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 323 (670)
.......+.+.|...|+.+.|+.-|++..
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 22344566778888899888888777643
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=91.67 E-value=18 Score=37.31 Aligned_cols=164 Identities=15% Similarity=0.069 Sum_probs=102.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCccHHHHHHHHH
Q 005905 231 IAINCCSQTGDWEFACSVYDDMTKKG---VIPDEVFLSALIDFAGH---AGKVEAAFEILQEAKNQGISVGIISYSSLMG 304 (670)
Q Consensus 231 ~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~t~~~li~~~~~---~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~ 304 (670)
.++-+|....+++...++.+.|...- +.-....--...-++.+ .|+.++|++++..+....-.++..+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44446999999999999999997652 11111111223334556 7999999999999766666788888888887
Q ss_pred HHHh---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC-hh---HHHHHH---HH-HHhCC---CCC
Q 005905 305 ACSN---------AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ-LP---KTMEVL---SD-MKSLG---LCP 364 (670)
Q Consensus 305 ~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~---~A~~l~---~~-m~~~g---~~p 364 (670)
.|-. ....++|...|.+-=+. .||..+=-.+...+...|. .+ +..++- .. ..+.| -..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 7632 22367788777765443 3443322122222223332 22 222222 11 12233 234
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005905 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDG 396 (670)
Q Consensus 365 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g 396 (670)
|-.-+.+++.++.-.|+.+.|.+..+.|.+..
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 55667788889999999999999999998763
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.59 E-value=4.3 Score=43.25 Aligned_cols=156 Identities=19% Similarity=0.126 Sum_probs=89.4
Q ss_pred HHHHcCCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 005905 200 ACANAGQVDRAREVYKMI-HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 278 (670)
Q Consensus 200 ~~~~~g~~~~A~~~~~~m-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 278 (670)
...-.++++.+.++...- .-..+ +..-.+.++..+-+.|.++.|+.+-.+-. .-.+...+.|+++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLD 335 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HH
T ss_pred HHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHH
Confidence 344567777765555311 11112 14457777888888888888887654321 1223455678888
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 005905 279 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358 (670)
Q Consensus 279 ~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 358 (670)
.|.++.++ ..+...|..|.+...++|+++-|++.|.+.. -|..|.-.|...|+.+.-.++.+...
T Consensus 336 ~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 336 IALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHH
Confidence 87766543 2356688888888888888888888887654 25566666777777776666666655
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005905 359 SLGLCPNTITYSILLVACERKDDVEVGLMLLS 390 (670)
Q Consensus 359 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 390 (670)
..|- ++....++.-.|++++..+++.
T Consensus 401 ~~~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 401 ERGD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 5541 4444455556677777776664
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.47 E-value=3.6 Score=42.01 Aligned_cols=90 Identities=11% Similarity=0.055 Sum_probs=39.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc-----CCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 005905 199 KACANAGQVDRAREVYKMIHKY-----NIKG---------TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264 (670)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~m~~~-----~~~~---------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 264 (670)
+.|.+.|++..|..-|+..... +.++ -..+++-+.-+|.+.+++..|+....+.+..+.. |...+
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHH
Confidence 3455666676666666654431 0000 0122333444444444444444444444443322 33333
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Q 005905 265 SALIDFAGHAGKVEAAFEILQEAKN 289 (670)
Q Consensus 265 ~~li~~~~~~g~~~~A~~i~~~m~~ 289 (670)
-.--.+|...|+++.|+..|+.+.+
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3333444444444444444444444
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.32 E-value=12 Score=34.76 Aligned_cols=203 Identities=17% Similarity=0.133 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005905 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 233 (670)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 233 (670)
...+......+...+.+..+...+...... .........+......+...+++..+.+.+.........+ ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 136 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALEL-ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLA 136 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHH
Confidence 344455555666666666666666665431 0113334455556666666777777777777766644322 12222222
Q ss_pred H-HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC
Q 005905 234 N-CCSQTGDWEFACSVYDDMTKKGV--IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310 (670)
Q Consensus 234 ~-~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g 310 (670)
. .+...|+++.|...|.+...... ......+......+...++.+.+...+....+.........+..+...+...+
T Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 137 LGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 2 67777888888888887755221 12333444444446667788888888888776642214667777888888888
Q ss_pred CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 005905 311 NWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSL 360 (670)
Q Consensus 311 ~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 360 (670)
+++.|...+....... |+ ...+..+...+...+..+++...+.+....
T Consensus 217 ~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 217 KYEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888888877653 33 344444555555677788888888887764
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.06 E-value=7.6 Score=33.03 Aligned_cols=89 Identities=12% Similarity=-0.007 Sum_probs=37.1
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHH---HHHHHHHHHHhcCCHH
Q 005905 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII---SYSSLMGACSNAKNWQ 313 (670)
Q Consensus 237 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~---~~~~li~~~~~~g~~~ 313 (670)
+..|+++.|++.|.+.+..-.+ ....||.-.+++.-+|+.++|++=+.+..+..-.-+.. .|..-...|...|+-+
T Consensus 54 aE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred HhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence 3344444444444444333211 33344444444444444444444444443321111111 1222223345556666
Q ss_pred HHHHHHHHHHhCC
Q 005905 314 KALELYEHMKSIK 326 (670)
Q Consensus 314 ~A~~~~~~m~~~~ 326 (670)
.|..-|+...+.|
T Consensus 133 ~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 133 AARADFEAAAQLG 145 (175)
T ss_pred HHHHhHHHHHHhC
Confidence 6666665555444
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=90.82 E-value=4.6 Score=34.43 Aligned_cols=139 Identities=16% Similarity=0.134 Sum_probs=63.4
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 005905 165 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 244 (670)
Q Consensus 165 ~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 244 (670)
.-.|.+++..++..+.... .+..-+|-+|--....-+-+-..++++.+-+ -.|. ..+|++..
T Consensus 13 ildG~V~qGveii~k~v~S-----sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDi----------s~C~NlKr 74 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS-----SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDI----------SKCGNLKR 74 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH-----S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-G----------GG-S-THH
T ss_pred HHhchHHHHHHHHHHHcCc-----CCccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------hhhcchHH
Confidence 3467778888888877653 2333444444333333333333334333322 1111 12222222
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005905 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324 (670)
Q Consensus 245 A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 324 (670)
....+-.+- -+...+...++.....|+-++-.+++..+.+.+ .+++...-.+..+|.+.|+..++.+++.+.-+
T Consensus 75 Vi~C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 75 VIECYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 222222111 022334445556666666666666766666533 55566666667777777777777777766665
Q ss_pred CCC
Q 005905 325 IKL 327 (670)
Q Consensus 325 ~~~ 327 (670)
.|+
T Consensus 149 kG~ 151 (161)
T PF09205_consen 149 KGL 151 (161)
T ss_dssp TT-
T ss_pred hch
Confidence 553
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.72 E-value=2.8 Score=41.18 Aligned_cols=75 Identities=15% Similarity=0.171 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh-----CCCCCCHHHHH
Q 005905 296 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS-----LGLCPNTITYS 370 (670)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~ 370 (670)
..++..++..+..+|+.+.+...++++.... +-+...|..+|.+|.+.|+...|+..|+++.+ .|+.|-..+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 4556677777788888888888888777665 34777788888888888888888888777764 34444444443
Q ss_pred H
Q 005905 371 I 371 (670)
Q Consensus 371 ~ 371 (670)
.
T Consensus 232 ~ 232 (280)
T COG3629 232 L 232 (280)
T ss_pred H
Confidence 3
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.72 E-value=16 Score=34.92 Aligned_cols=75 Identities=13% Similarity=0.160 Sum_probs=34.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCch-HHHHHHHHHHHhhhhhHHHHHHHhhhCCCCC--HHHHHHHHHHHHcCCCHH
Q 005905 33 NRLIRQGRISECIDLLEDMERKGLLDMD-KVYHARFFNVCKSQKAIKEAFRFFKLVPNPT--LSTFNMLMSVCASSKDSE 109 (670)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~g~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~y~~li~~~~~~g~~~ 109 (670)
+++-...+++.|...+.+..+.. ..+ ...|+ .+.++.|.-+.+.+..-+ +..|+-....|..+|.++
T Consensus 39 vafRnAk~feKakdcLlkA~~~y--EnnrslfhA--------AKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspd 108 (308)
T KOG1585|consen 39 VAFRNAKKFEKAKDCLLKASKGY--ENNRSLFHA--------AKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPD 108 (308)
T ss_pred HHHHhhccHHHHHHHHHHHHHHH--HhcccHHHH--------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcc
Confidence 34445666666666665554221 111 11221 123444444444443221 223555566666666666
Q ss_pred HHHHHHHH
Q 005905 110 GAFQVLRL 117 (670)
Q Consensus 110 ~A~~~~~~ 117 (670)
-|-..+++
T Consensus 109 tAAmaleK 116 (308)
T KOG1585|consen 109 TAAMALEK 116 (308)
T ss_pred hHHHHHHH
Confidence 65555543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=90.50 E-value=29 Score=37.54 Aligned_cols=128 Identities=16% Similarity=0.155 Sum_probs=83.5
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHcC--C-CCCHH
Q 005905 156 VFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIGAL-MKACANAGQVDRAREVYKMIHKYN--I-KGTPE 227 (670)
Q Consensus 156 ~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~l-i~~~~~~g~~~~A~~~~~~m~~~~--~-~~~~~ 227 (670)
.|..++..++. ....+.|.++++.+.+. -|+...|... .+.+...|++++|.+.|+...... . +....
T Consensus 231 ~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~----yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l 306 (468)
T PF10300_consen 231 WYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR----YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHL 306 (468)
T ss_pred HHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHH
Confidence 45555544443 45688999999999875 5776666443 356778899999999998765321 1 11223
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCh-------HHHHHHHHHHH
Q 005905 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA-GHAGKV-------EAAFEILQEAK 288 (670)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~-~~~g~~-------~~A~~i~~~m~ 288 (670)
.+--+.-.+.-..+|++|.+.|..+.+..- .+..+|.-+..+| ...++. ++|.+++.++.
T Consensus 307 ~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 307 CYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 444566677888999999999999987532 2344454444333 345666 77777777653
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.38 E-value=8.5 Score=32.74 Aligned_cols=91 Identities=15% Similarity=0.087 Sum_probs=60.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh-CCCCCC--HHHHHHHHHHHHhcCC
Q 005905 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS-LGLCPN--TITYSILLVACERKDD 381 (670)
Q Consensus 305 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~--~~t~~~ll~a~~~~g~ 381 (670)
+.+..|+.+.|.+.|.+....- +.+...||.-..++.-.|+.++|++=+++..+ .|-+-. ...|..--..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4567788888888888776543 33667788888888888888888887777766 332211 1223322334667788
Q ss_pred HHHHHHHHHHHHHCC
Q 005905 382 VEVGLMLLSQAKEDG 396 (670)
Q Consensus 382 ~~~a~~~~~~m~~~g 396 (670)
.+.|..=|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 888888887776665
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.31 E-value=4.4 Score=39.28 Aligned_cols=98 Identities=15% Similarity=0.178 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHH
Q 005905 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHP--VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI--KGTPEVYTI 231 (670)
Q Consensus 156 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~--~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~ 231 (670)
.|+.-+..| +.|++..|...|...++...+ ..|| .+--|..++...|++++|..+|..+.+.-. +--+..+--
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~n--A~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPN--AYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccch--hHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 577666654 677799999999988876221 2333 344488888899999999999988876421 122466777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC
Q 005905 232 AINCCSQTGDWEFACSVYDDMTKKG 256 (670)
Q Consensus 232 li~~~~~~g~~~~A~~l~~~m~~~g 256 (670)
|..+..+.|+.++|..+|+++.+.=
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 7778888889999999998888763
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.30 E-value=14 Score=36.92 Aligned_cols=103 Identities=9% Similarity=-0.025 Sum_probs=61.0
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHH----HHHHHHHcCCHHHHHHHHHHHHHc
Q 005905 145 AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA----LMKACANAGQVDRAREVYKMIHKY 220 (670)
Q Consensus 145 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~----li~~~~~~g~~~~A~~~~~~m~~~ 220 (670)
+.++..+.|..+++-.=++|..+|+.+.-...++++... ..||...|+- ..-++..+|-+++|++.-++..+.
T Consensus 128 klL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~---wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqi 204 (491)
T KOG2610|consen 128 KLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK---WNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQI 204 (491)
T ss_pred HHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc---cCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccC
Confidence 344455666666666667777777777767777766543 2344322222 222334567777777776666665
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005905 221 NIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251 (670)
Q Consensus 221 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 251 (670)
+ +.|.-.-.++...+-..|+..++.++..+
T Consensus 205 N-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 205 N-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred C-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 5 44555555666666666777777665544
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.87 E-value=15 Score=33.21 Aligned_cols=98 Identities=16% Similarity=0.250 Sum_probs=49.2
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHC
Q 005905 213 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG--KVEAAFEILQEAKNQ 290 (670)
Q Consensus 213 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g--~~~~A~~i~~~m~~~ 290 (670)
..+.+.+.+++++...|..+|+.+.+.|++.. +.++...++-+|.......+-.+.... -..-|.+++.++.
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~-- 89 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG-- 89 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh--
Confidence 33444555666666677777777777666433 444555566666665555443332211 1222233333222
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005905 291 GISVGIISYSSLMGACSNAKNWQKALELYEHM 322 (670)
Q Consensus 291 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 322 (670)
..+..+++.+...|++-+|.++.+..
T Consensus 90 ------~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 90 ------TAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred ------hhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 12334455555666666666555543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.62 E-value=4 Score=40.13 Aligned_cols=70 Identities=17% Similarity=0.206 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 005905 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-----KGVIPDEVFLS 265 (670)
Q Consensus 195 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~ 265 (670)
..++..+...|+++.+...++++.... +-+...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+..
T Consensus 157 ~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 157 TKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 334444555555555555555555544 44455555555555555555555555555433 34444444443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.59 E-value=38 Score=37.65 Aligned_cols=89 Identities=17% Similarity=0.139 Sum_probs=72.3
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005905 294 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373 (670)
Q Consensus 294 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 373 (670)
..-.+.+--+.-+...|+..+|.++-.+.+ -||-..|-.=+.+++..+++++-+++-+.++. ++-|.-..
T Consensus 682 f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFV 751 (829)
T KOG2280|consen 682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFV 751 (829)
T ss_pred cccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHH
Confidence 334455566667778899999999988887 78999999999999999999987777665542 46677788
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 005905 374 VACERKDDVEVGLMLLSQA 392 (670)
Q Consensus 374 ~a~~~~g~~~~a~~~~~~m 392 (670)
.+|.+.|+.++|.+++.+.
T Consensus 752 e~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 752 EACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred HHHHhcccHHHHhhhhhcc
Confidence 9999999999999999754
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.59 E-value=41 Score=37.96 Aligned_cols=173 Identities=12% Similarity=0.093 Sum_probs=105.3
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-chHHHHHHHHHHHhhhhhHHHHHHHhhh-CCCCCHHHHHHHHHHHHcC
Q 005905 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLD-MDKVYHARFFNVCKSQKAIKEAFRFFKL-VPNPTLSTFNMLMSVCASS 105 (670)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~y~~li~~~~~~ 105 (670)
...-.+.|++..-+..|+.+-+.- +..+ ....++......+.+.|++++|...+-+ +..-++ ..+|.-|...
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~---s~Vi~kfLda 410 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP---SEVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh---HHHHHHhcCH
Confidence 333455556666777777665443 2212 2355677777888889999999988754 322221 2456666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHh---cCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHH
Q 005905 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE---NVKPDRV--VFNALITACGQSGAVDRAFDVLAEM 180 (670)
Q Consensus 106 g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~---~~~~~~~--~~~~li~~~~~~g~~~~A~~l~~~m 180 (670)
.....-..+++.+.+.|+. +...-+.|+++|.+.++.+...+ ....... -....+..+-+.+-.++|.-+-...
T Consensus 411 q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~ 489 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKF 489 (933)
T ss_pred HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHh
Confidence 6777777788889999874 66667889999999999887654 2221111 1234555566666666665554433
Q ss_pred hhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005905 181 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 217 (670)
Q Consensus 181 ~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m 217 (670)
.. .......+ +-..+++++|.+.+..+
T Consensus 490 ~~-------he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 490 KK-------HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred cc-------CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 21 11222222 34567788888877655
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.49 E-value=23 Score=34.90 Aligned_cols=143 Identities=13% Similarity=0.060 Sum_probs=75.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 005905 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 279 (670)
Q Consensus 200 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 279 (670)
.....|++.+|...|+...... +.+...--.+..+|...|+.+.|..++..+...--.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4456677777777777776654 333455666777777777777777777776543222222222223333434433333
Q ss_pred HHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhCCC
Q 005905 280 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI--KLKPTVSTMNALITALCDGDQ 346 (670)
Q Consensus 280 A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~ 346 (670)
...+....-.. +-|...-..+...|...|+.+.|.+.+-.+.+. +.. |...-..|+..+.--|.
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCC
Confidence 33333333221 225555556666677777777776655554432 221 33334444444444443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=89.37 E-value=25 Score=37.11 Aligned_cols=162 Identities=8% Similarity=0.063 Sum_probs=78.4
Q ss_pred HHH--HHHHHHHHhcC-----CHHHHHHHHHHHhhCCCCCCCCHH-HHHHHHHHHHH---------cCCHHHHHHHHHHH
Q 005905 155 VVF--NALITACGQSG-----AVDRAFDVLAEMNAEVHPVDPDHI-TIGALMKACAN---------AGQVDRAREVYKMI 217 (670)
Q Consensus 155 ~~~--~~li~~~~~~g-----~~~~A~~l~~~m~~~~~~~~pd~~-t~~~li~~~~~---------~g~~~~A~~~~~~m 217 (670)
..| ...+.+..... ..+.|+.+|.+.... ..+.|+-. .|..+..++.. .....+|.+.-+..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~-~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rA 330 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNK-SDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYV 330 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhc-ccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 455 55555544422 256777788887732 13455532 22222222111 12344455555555
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCccH
Q 005905 218 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG-ISVGI 296 (670)
Q Consensus 218 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~-~~~~~ 296 (670)
.+.+ +.|+.+...+..+....++++.|..+|++....+.. ...+|...--.+...|+.++|.+.+++..+.. ...-.
T Consensus 331 veld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 331 SDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred HhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 5555 455666666655556666666666666666555322 22333333333444566666666666644432 11112
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q 005905 297 ISYSSLMGACSNAKNWQKALELYE 320 (670)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~ 320 (670)
.+....+++|+..+ .+.|.++|-
T Consensus 409 ~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 409 VVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHHcCCc-hhhhHHHHh
Confidence 22333334554433 455555544
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.05 E-value=16 Score=34.77 Aligned_cols=55 Identities=15% Similarity=0.002 Sum_probs=25.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCC---CCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 005905 264 LSALIDFAGHAGKVEAAFEILQEAKNQG---ISVGIISYSSLMGACSNAKNWQKALELY 319 (670)
Q Consensus 264 ~~~li~~~~~~g~~~~A~~i~~~m~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~ 319 (670)
|...|-.+....++..|...++.--+.+ -+-+..+...|+.+| ..|+.+++.++.
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 3334444445555555555555532221 122344455555555 345555554443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.04 E-value=32 Score=35.91 Aligned_cols=146 Identities=10% Similarity=0.120 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHH
Q 005905 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQG-ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM-NALI 338 (670)
Q Consensus 261 ~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li 338 (670)
...|++.+.+..+..-++.|..+|-+..+.+ +.+++.+++++|..++ .|+...|.++|+.=... -||...| +-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4678889999999999999999999999998 7788999999998776 57888999999853332 3555544 4566
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005905 339 TALCDGDQLPKTMEVLSDMKSLGLCPN--TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412 (670)
Q Consensus 339 ~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 412 (670)
.-+...++-+.|..+|+.-... +.-+ ...|..+|.-=+.-|++..+..+=+.|... -|-..+...+...|+
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 6777889999999999965542 2233 467889999889999999998888888773 355444444444443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.82 E-value=1.7 Score=29.13 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=8.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 005905 199 KACANAGQVDRAREVYKMIHK 219 (670)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~m~~ 219 (670)
.+|...|++++|+++|+.+.+
T Consensus 9 ~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 9 RAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 333333333333333333333
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.75 E-value=4.5 Score=39.75 Aligned_cols=101 Identities=15% Similarity=0.219 Sum_probs=60.4
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCC--CHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC
Q 005905 291 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK---LKP--TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365 (670)
Q Consensus 291 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 365 (670)
|.+....+...++..-....+++.+...+-+++... ..| +..+|-.++ -.-+.++++.++..=...|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhccccc
Confidence 334444455555555555666777776666665321 011 122222222 22356677777777777778888
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 366 TITYSILLVACERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 366 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 395 (670)
.+|++.+++.+.+.+++.+|.++.-.|...
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 888888888888888877777777665543
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=88.71 E-value=57 Score=38.44 Aligned_cols=152 Identities=14% Similarity=0.179 Sum_probs=93.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHhcCChHHH
Q 005905 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI----DFAGHAGKVEAA 280 (670)
Q Consensus 205 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li----~~~~~~g~~~~A 280 (670)
++++.|+.-+.++. ...|.-.++.--+.|.+.+|+.++. |+...+..+. +-+.....+++|
T Consensus 894 ~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~~aL~ly~--------~~~e~~k~i~~~ya~hL~~~~~~~~A 958 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG-------ETYFPECKNYIKKHGLYDEALALYK--------PDSEKQKVIYEAYADHLREELMSDEA 958 (1265)
T ss_pred HHHHHHHHHHHHcC-------ccccHHHHHHHHhcccchhhhheec--------cCHHHHHHHHHHHHHHHHHhccccHH
Confidence 45556655544442 2345555666667777777777663 4555444444 444455667777
Q ss_pred HHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhCCChhHHHHHHHHHH
Q 005905 281 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST--MNALITALCDGDQLPKTMEVLSDMK 358 (670)
Q Consensus 281 ~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~l~~~m~ 358 (670)
--.|+..-+. --.+.+|..+|+|.+|..+-.++.. ..|... -..|+.-+...++.-+|-+++.+..
T Consensus 959 al~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 959 ALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 6666543221 2456778888888888888887753 223222 2568888888999999998888766
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005905 359 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391 (670)
Q Consensus 359 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 391 (670)
.. |. -.+.-++++..+++|.++-..
T Consensus 1027 sd---~~-----~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1027 SD---PE-----EAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred cC---HH-----HHHHHHhhHhHHHHHHHHHHh
Confidence 42 22 223345566677777776643
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=88.60 E-value=36 Score=35.97 Aligned_cols=78 Identities=10% Similarity=-0.003 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 005905 279 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358 (670)
Q Consensus 279 ~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 358 (670)
+|.+.-+...+.+ +.|......+..+..-.++++.|...|++....++. ...+|......+.-.|+.++|.+.+++..
T Consensus 322 ~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 322 KALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3444444444443 344444444444444445555555555555444211 22233333333344555555555555533
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.48 E-value=15 Score=41.17 Aligned_cols=151 Identities=17% Similarity=0.221 Sum_probs=71.1
Q ss_pred CCHHHHHHHHHHHH----hcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 005905 152 PDRVVFNALITACG----QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227 (670)
Q Consensus 152 ~~~~~~~~li~~~~----~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 227 (670)
.|......+...|+ +.|++++|...|-+-... ++|. .+|.-|..+.++.+-...++.+.+.|+ .+..
T Consensus 362 ~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~---le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~d 432 (933)
T KOG2114|consen 362 LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF---LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGL-ANSD 432 (933)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc---CChH-----HHHHHhcCHHHHHHHHHHHHHHHHccc-ccch
Confidence 34444444444443 346666666655554431 3332 244444455555555555555555553 2334
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHH
Q 005905 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307 (670)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~ 307 (670)
.-+.|+.+|.+.++.++-.++.+.-. .|.- ..-+...+..|.+.+-+++|..+-..... .......+ +-
T Consensus 433 httlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---le 501 (933)
T KOG2114|consen 433 HTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---LE 501 (933)
T ss_pred hHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---HH
Confidence 45556666666666665555444332 2211 11133444555555555555544333221 12222222 33
Q ss_pred hcCCHHHHHHHHHHH
Q 005905 308 NAKNWQKALELYEHM 322 (670)
Q Consensus 308 ~~g~~~~A~~~~~~m 322 (670)
..+++++|.+.+..+
T Consensus 502 ~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 502 DLHNYEEALRYISSL 516 (933)
T ss_pred HhcCHHHHHHHHhcC
Confidence 456666666666655
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.05 E-value=40 Score=37.32 Aligned_cols=183 Identities=15% Similarity=0.066 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHH--HH-HHhcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcC-
Q 005905 207 VDRAREVYKMIHKYNIKGTPEVYTIAI--NC-CSQTGDWEFACSVYDDMTK-------KGVIPDEVFLSALIDFAGHAG- 275 (670)
Q Consensus 207 ~~~A~~~~~~m~~~~~~~~~~~~~~li--~~-~~~~g~~~~A~~l~~~m~~-------~g~~p~~~t~~~li~~~~~~g- 275 (670)
...|.++++...+.|. ......-..+ .+ +....|.+.|+.+|+.+.+ .|. .....-+-.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~---~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGL---PPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcC---CccccHHHHHHhcCCC
Confidence 5678888888877763 1112222222 22 4466789999999988876 442 224445555565532
Q ss_pred ----ChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hCCChh
Q 005905 276 ----KVEAAFEILQEAKNQGISVGIISYSSLMGACSN-AKNWQKALELYEHMKSIKLKPTVSTMNALITALC--DGDQLP 348 (670)
Q Consensus 276 ----~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~--~~g~~~ 348 (670)
+.+.|+.++....+.| .|+....-..+..... -.+...|.++|...-..|.. ...-+-+++.... ...+..
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred CccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHH
Confidence 5677888888888887 4544444333333333 24678899999888877632 3322222222111 234567
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005905 349 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 397 (670)
Q Consensus 349 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~ 397 (670)
.|..++.+..+.| .|-..--...+..+.. +..+.+.-.+..+...|.
T Consensus 382 ~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 7778887777776 3332222333444444 666666666666666553
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.00 E-value=2 Score=28.87 Aligned_cols=27 Identities=15% Similarity=0.113 Sum_probs=14.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 005905 299 YSSLMGACSNAKNWQKALELYEHMKSI 325 (670)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 325 (670)
+..+...|...|++++|.++|+++.+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344455555555555555555555544
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.99 E-value=34 Score=35.03 Aligned_cols=287 Identities=15% Similarity=0.057 Sum_probs=166.3
Q ss_pred hhhhHHHHHHHhhhC---CCCCHHHHHHHHHH--HHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005905 73 SQKAIKEAFRFFKLV---PNPTLSTFNMLMSV--CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147 (670)
Q Consensus 73 ~~~~~~~A~~~~~~~---~~~~~~~y~~li~~--~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~ 147 (670)
..|+-..|.++-.+. ...|....-.|+.+ -.-.|+++.|.+-|+-|... ..|--.=+.+
T Consensus 96 gAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-----PEtRllGLRg----------- 159 (531)
T COG3898 96 GAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-----PETRLLGLRG----------- 159 (531)
T ss_pred ccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-----hHHHHHhHHH-----------
Confidence 346677777765543 23444444445533 34479999999999999863 2222111111
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCC
Q 005905 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYN-IKGT 225 (670)
Q Consensus 148 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~ 225 (670)
|.-.--+.|+.+.|..+-++.-.. .|. ...+...+...|..|+++.|+++.+.-.... +.++
T Consensus 160 ------------LyleAqr~GareaAr~yAe~Aa~~----Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~ 223 (531)
T COG3898 160 ------------LYLEAQRLGAREAARHYAERAAEK----APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKD 223 (531)
T ss_pred ------------HHHHHHhcccHHHHHHHHHHHHhh----ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchh
Confidence 111123455666666666555433 232 3456677777777777777777776554432 2222
Q ss_pred HH--HHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHH
Q 005905 226 PE--VYTIAINCCSQ---TGDWEFACSVYDDMTKKGVIPDEVFL-SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 299 (670)
Q Consensus 226 ~~--~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~-~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~ 299 (670)
.. .-..|+.+-.. ..+...|...-.+..+. .||.+-- ..-..++.+.|++.++-.+++.+-+....|+..
T Consensus 224 ~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia-- 299 (531)
T COG3898 224 VAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA-- 299 (531)
T ss_pred hHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH--
Confidence 21 12223322211 23556666655555443 4443322 223456788899999999999998876555432
Q ss_pred HHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-H
Q 005905 300 SSLMGACSNAKNWQKAL-ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC-E 377 (670)
Q Consensus 300 ~~li~~~~~~g~~~~A~-~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~-~ 377 (670)
.+..+.+.|+.-... +-.+.+.+.. +.+..+--.+..+-...|++..|..--+.... ..|....|..+.+.- .
T Consensus 300 --~lY~~ar~gdta~dRlkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeA 374 (531)
T COG3898 300 --LLYVRARSGDTALDRLKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEA 374 (531)
T ss_pred --HHHHHhcCCCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhh
Confidence 333455666632221 1111122221 33566677777888888998888776666555 478888888777764 4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC
Q 005905 378 RKDDVEVGLMLLSQAKEDGVIPN 400 (670)
Q Consensus 378 ~~g~~~~a~~~~~~m~~~g~~p~ 400 (670)
..|+-.++.+.+.+..+..-.|+
T Consensus 375 etGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 375 ETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred ccCchHHHHHHHHHHhcCCCCCc
Confidence 55999999999988887655554
|
|
| >PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein | Back alignment and domain information |
|---|
Probab=87.97 E-value=2.4 Score=33.24 Aligned_cols=61 Identities=23% Similarity=0.303 Sum_probs=37.6
Q ss_pred eccccCcchhhHHHHHHHHHHHHHhhhhCCCCCCceEeccCccceeecCCCcchhhhhHhhhHHHHHHHHHhCCCCCC
Q 005905 536 VDARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQG 613 (670)
Q Consensus 536 ~~~~~~~~~~~~i~~l~~l~~l~~~~~~~~~~p~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~p~~~ 613 (670)
+|+++++...|..++..+|.....+-. ..+ .|+||.|.|+. .+.|+++|...|++ +.++..
T Consensus 1 iDLHG~~~~eA~~~l~~~l~~~~~~~~--------~~~------~II~G~G~hS~--~g~Lk~~V~~~L~~-~~~~~~ 61 (83)
T PF01713_consen 1 IDLHGLTVEEALRALEEFLDEARQRGI--------REL------RIITGKGNHSK--GGVLKRAVRRWLEE-GYQYEE 61 (83)
T ss_dssp EE-TTS-HHHHHHHHHHHHHHHHHTTH--------SEE------EEE--STCTCC--TSHHHHHHHHHHHH-THCCTT
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHcCC--------CEE------EEEeccCCCCC--CCcHHHHHHHHHHh-hhccch
Confidence 588899988887776556655543222 222 58899997763 22399999999988 655543
|
It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.93 E-value=15 Score=32.12 Aligned_cols=75 Identities=12% Similarity=0.069 Sum_probs=48.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005905 199 KACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273 (670)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~ 273 (670)
....+.|++++|.+.|+.+..+-. +-...+---++.+|.+.+++++|...+++.++....-..+-|...+.+++.
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 344567888888888877776421 112345556778888888888888888888776554334455555555443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=87.89 E-value=37 Score=36.05 Aligned_cols=60 Identities=12% Similarity=0.169 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 300 SSLMGACSNAKNWQKALELYEHMKSIKLK-PTVSTMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
..|..++-+.|+.++|.+.|++|.+.... -+......||.++...+.+.++..++.+-.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 44555556677777777777777543211 1333455677777777777777777777644
|
The molecular function of this protein is uncertain. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=87.63 E-value=32 Score=34.25 Aligned_cols=133 Identities=14% Similarity=0.140 Sum_probs=68.1
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 005905 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 182 (670)
Q Consensus 103 ~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 182 (670)
.+.|+.+.|...+.+....-...++.....|...| ||.-...+.+..+++.|...+++..+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~-------------------yn~G~~l~~~~~~~~~a~~wL~~a~~ 64 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVC-------------------YNIGKSLLSKKDKYEEAVKWLQRAYD 64 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHH-------------------HHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 46788888888888776643223333333443333 33333444333355555554444322
Q ss_pred C------CCCCCCCH-----HHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005905 183 E------VHPVDPDH-----ITIGALMKACANAGQVD---RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248 (670)
Q Consensus 183 ~------~~~~~pd~-----~t~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 248 (670)
- .....|+. .++..++.+|...+..+ +|.++.+.+... .+..+.++-.-+..+.+.++.+.+.++
T Consensus 65 ~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~ 143 (278)
T PF08631_consen 65 ILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEI 143 (278)
T ss_pred HHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHH
Confidence 1 01123332 23445555666555533 344454445332 222345555556666667777777777
Q ss_pred HHHHHHC
Q 005905 249 YDDMTKK 255 (670)
Q Consensus 249 ~~~m~~~ 255 (670)
+.+|...
T Consensus 144 L~~mi~~ 150 (278)
T PF08631_consen 144 LMRMIRS 150 (278)
T ss_pred HHHHHHh
Confidence 7777665
|
It is also involved in sporulation []. |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=87.50 E-value=31 Score=33.99 Aligned_cols=142 Identities=15% Similarity=0.178 Sum_probs=93.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh-c-CChHHHHHHHHHHHHC-CCCccHHHHHHHHH
Q 005905 229 YTIAINCCSQTGDWEFACSVYDDMTK-KGVIPDEVFLSALIDFAGH-A-GKVEAAFEILQEAKNQ-GISVGIISYSSLMG 304 (670)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~li~~~~~-~-g~~~~A~~i~~~m~~~-~~~~~~~~~~~li~ 304 (670)
|..|+. ++....+|+.+|+...- ..+--|..+...+++.... . ..+..-.++.+.+... +-.++..+...++.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 555543 34456678888874322 2344577777777777655 2 2344444555555543 34677788889999
Q ss_pred HHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhCCChhHHHHHHHH-----HHhCCCCCCHHHHHHHH
Q 005905 305 ACSNAKNWQKALELYEHMKSI-KLKPTVSTMNALITALCDGDQLPKTMEVLSD-----MKSLGLCPNTITYSILL 373 (670)
Q Consensus 305 ~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~-----m~~~g~~p~~~t~~~ll 373 (670)
.+++.+++.+-.++++..... +...|...|..+|......|+..-...+.++ +++.|+..+...-..+-
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~ 285 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLS 285 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHH
Confidence 999999999999999876654 5667888999999999999997766665554 23344555544444433
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=87.44 E-value=32 Score=34.18 Aligned_cols=164 Identities=11% Similarity=0.039 Sum_probs=89.3
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCCCHHH-----HHHHHHHHHHcC-CHHHHHHHHHHHHHc--------CCCCCH----
Q 005905 165 GQSGAVDRAFDVLAEMNAEVHPVDPDHIT-----IGALMKACANAG-QVDRAREVYKMIHKY--------NIKGTP---- 226 (670)
Q Consensus 165 ~~~g~~~~A~~l~~~m~~~~~~~~pd~~t-----~~~li~~~~~~g-~~~~A~~~~~~m~~~--------~~~~~~---- 226 (670)
.+.|+.+.|..++.+.........|+... +-.+.......+ +++.|...+++..+. ...++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46789999999998887642133454322 112222333455 787777777655332 112222
Q ss_pred -HHHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHH
Q 005905 227 -EVYTIAINCCSQTGDWE---FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302 (670)
Q Consensus 227 -~~~~~li~~~~~~g~~~---~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~l 302 (670)
.+...++.+|...+..+ +|..+++.+...... ...++..-+..+.+.++.+.+.+++..|...- ......+..+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~ 161 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHH
Confidence 35566777777776654 455566666544332 23444455666666788888888888887763 2122333333
Q ss_pred HHHH---HhcCCHHHHHHHHHHHHhCCCCCCH
Q 005905 303 MGAC---SNAKNWQKALELYEHMKSIKLKPTV 331 (670)
Q Consensus 303 i~~~---~~~g~~~~A~~~~~~m~~~~~~p~~ 331 (670)
+..+ .... ...|...+..+....+.|..
T Consensus 162 l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 162 LHHIKQLAEKS-PELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHhhC-cHHHHHHHHHHHHHHhCCCh
Confidence 3333 3332 34455555555443334433
|
It is also involved in sporulation []. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.30 E-value=32 Score=33.94 Aligned_cols=145 Identities=14% Similarity=0.033 Sum_probs=92.1
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 005905 163 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 242 (670)
Q Consensus 163 ~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 242 (670)
.....|++.+|..+|....... .-+...-..+..+|...|+.+.|..++..+....-........+-|..+.+....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~---~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA---PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC---cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 4567888999999998887752 2234455667888899999999999998876543222222323345555555555
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CccHHHHHHHHHHHHhcCCHH
Q 005905 243 EFACSVYDDMTKKGVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI-SVGIISYSSLMGACSNAKNWQ 313 (670)
Q Consensus 243 ~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~ 313 (670)
.+...+-.+.-.. | |...-..+...+...|+.+.|++.+-.+.+.+. .-|...-..|+..+.-.|.-+
T Consensus 220 ~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 220 PEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPAD 289 (304)
T ss_pred CCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCC
Confidence 5554444444332 3 555556677788888999998887777665531 233445556666665555333
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=87.21 E-value=8.1 Score=35.46 Aligned_cols=62 Identities=16% Similarity=0.113 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005905 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE--VFLSALIDFAGHAGKVEAAFEILQEAK 288 (670)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~li~~~~~~g~~~~A~~i~~~m~ 288 (670)
..+..+.+.|++.|+.+.|++.|.++.+....+.. ..+-.+|..+.-.+++..+.....+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34666777777777777777777777665444332 234556666666677766666655543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.15 E-value=30 Score=33.42 Aligned_cols=59 Identities=14% Similarity=0.033 Sum_probs=37.7
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005905 162 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 220 (670)
Q Consensus 162 ~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 220 (670)
..-.+.|++++|.+.|+.+..+.+.-+-...+...++-++-+.++++.|....++..+.
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 33457788888888888887652221222344555566677777888887777766554
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.07 E-value=9.2 Score=37.11 Aligned_cols=97 Identities=11% Similarity=0.072 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhCCChhHHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 005905 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLK--PTVSTMNALITALCDGDQLPKTMEVLSDMKSL-GLCPN-TITYSILL 373 (670)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~-~~t~~~ll 373 (670)
.|+.-+..| +.|++..|...|....+..+. -....+--|..++...|++++|..+|..+.+. +-.|- ...+.-|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 566666544 566688888888877764311 11223344777888888888888888887763 11222 35566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 005905 374 VACERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 374 ~a~~~~g~~~~a~~~~~~m~~~ 395 (670)
.+..+.|+.++|..+|++..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 6777888888888888877764
|
|
| >KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.43 E-value=66 Score=36.68 Aligned_cols=310 Identities=10% Similarity=0.055 Sum_probs=151.1
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCch-HHHHHHHHHHHhhhhhHHHHHHHhhhCCCCCHHHHHHHHHHHHc
Q 005905 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMD-KVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCAS 104 (670)
Q Consensus 26 ~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~ 104 (670)
+.--..|+.++..|+++.|+++-..- |.. .++...-+.++...+.+..|-+++..+ ..+|..+.--|..
T Consensus 359 dE~R~vWk~yLd~g~y~kAL~~ar~~------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t----~~~FEEVaLKFl~ 428 (911)
T KOG2034|consen 359 DEARDVWKTYLDKGEFDKALEIARTR------PDALETVLLKQADFLFQDKEYLRAAEIYAET----LSSFEEVALKFLE 428 (911)
T ss_pred cchHHHHHHHHhcchHHHHHHhccCC------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh----hhhHHHHHHHHHh
Confidence 34456899999999999999885433 221 233333455677778888888888776 3445555544555
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005905 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDR---VVFNALITACGQSGAVDRAFDVLAEMN 181 (670)
Q Consensus 105 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~ 181 (670)
..+.+ ++..|-.=+-..++|...+-..++..+.-.-.+++.-+.-.+|. ..|+.- .++..+-|....
T Consensus 429 ~~~~~-~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~---------~~~~~re~~~~~ 498 (911)
T KOG2034|consen 429 INQER-ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLE---------YDEVQREFSKFL 498 (911)
T ss_pred cCCHH-HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHH---------HHHHHHHHHHHH
Confidence 55555 55544322222355555544443333221111111100001111 111111 111111222211
Q ss_pred hCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 005905 182 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261 (670)
Q Consensus 182 ~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 261 (670)
. ..-+.....++...+...|+.+....+-.-|. .|..++..+.+.+.+++|++++..-. .|..
T Consensus 499 ~----~~~~~~nretv~~l~~~~~~~e~ll~fA~l~~---------d~~~vv~~~~q~e~yeeaLevL~~~~----~~el 561 (911)
T KOG2034|consen 499 V----LHKDELNRETVYQLLASHGRQEELLQFANLIK---------DYEFVVSYWIQQENYEEALEVLLNQR----NPEL 561 (911)
T ss_pred H----hhHHhhhHHHHHHHHHHccCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhcc----chhh
Confidence 1 11222334445556667777777666554443 36678888899999999988876531 1111
Q ss_pred H-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 005905 262 V-FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK---NWQKALELYEHMKSIKLKPTVSTMNAL 337 (670)
Q Consensus 262 ~-t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~l 337 (670)
. -|...+ ....+.+-...+.. .+-..+......++..+.+.+ ....+....+--...-..-+...+|.+
T Consensus 562 ~yk~ap~L----i~~~p~~tV~~wm~---~~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~l 634 (911)
T KOG2034|consen 562 FYKYAPEL----ITHSPKETVSAWMA---QKDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSL 634 (911)
T ss_pred HHHhhhHH----HhcCcHHHHHHHHH---ccccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHH
Confidence 1 111111 11222222222222 222223444455566665553 233444444433332224588889999
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 005905 338 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381 (670)
Q Consensus 338 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 381 (670)
+..|+++.+-+.-..+-..+...+. ..+-....++.|.+.+.
T Consensus 635 l~lya~~~~~~ll~~le~~~~~~~~--~~YDl~~alRlc~~~~~ 676 (911)
T KOG2034|consen 635 LHLYAKHERDDLLLYLEIIKFMKSR--VHYDLDYALRLCLKFKK 676 (911)
T ss_pred HHHhhcCCccchHHHHHHHhhcccc--ceecHHHHHHHHHHhCc
Confidence 9998877665444333333222211 22222344555655554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.22 E-value=33 Score=33.09 Aligned_cols=175 Identities=7% Similarity=-0.032 Sum_probs=95.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--
Q 005905 200 ACANAGQVDRAREVYKMIHKYNIKG---TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA-- 274 (670)
Q Consensus 200 ~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~-- 274 (670)
.-.+.|++++|.+.|+.+..+- +. ...+--.++-++.+.+++++|+..+++....-..-...-|..-|.+.+..
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~ 121 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQ 121 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcc
Confidence 3447788888888888887642 22 23455556777788888888888888877654433334454445444421
Q ss_pred -----CChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhCCCh
Q 005905 275 -----GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM--NALITALCDGDQL 347 (670)
Q Consensus 275 -----g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~--~~li~~~~~~g~~ 347 (670)
.+...+...+..+ ..+|.-|=...-...|......+. |.... ..+..-|.+.|.+
T Consensus 122 i~~~~rDq~~~~~A~~~f------------~~~i~ryPnS~Ya~dA~~~i~~~~------d~LA~~Em~IaryY~kr~~~ 183 (254)
T COG4105 122 IDDVTRDQSAARAAFAAF------------KELVQRYPNSRYAPDAKARIVKLN------DALAGHEMAIARYYLKRGAY 183 (254)
T ss_pred CCccccCHHHHHHHHHHH------------HHHHHHCCCCcchhhHHHHHHHHH------HHHHHHHHHHHHHHHHhcCh
Confidence 1222222222221 112222222222233333222222 11111 1234557788888
Q ss_pred hHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 348 PKTMEVLSDMKSLGLCPN---TITYSILLVACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 348 ~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 394 (670)
..|..-+++|.+. .+-. ...+-.+..+|.+.|..++|.+.-+-+..
T Consensus 184 ~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 184 VAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 8888888888875 2222 23445556677788888877776554433
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=85.93 E-value=14 Score=32.95 Aligned_cols=53 Identities=11% Similarity=0.014 Sum_probs=36.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC
Q 005905 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88 (670)
Q Consensus 34 ~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 88 (670)
.-++.++.+++..+++.+.-.. |....+...-..++...|++.+|+++|+.+.
T Consensus 19 ~al~~~~~~D~e~lL~ALrvLR--P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVLR--PEFPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred HHHccCChHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3346778888888888876654 5555555555666777788888888887764
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.01 E-value=55 Score=36.29 Aligned_cols=185 Identities=16% Similarity=0.120 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHhhCCCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHhcC-
Q 005905 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKA-CANAGQVDRAREVYKMIHK-------YNIKGTPEVYTIAINCCSQTG- 240 (670)
Q Consensus 170 ~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~-~~~~g~~~~A~~~~~~m~~-------~~~~~~~~~~~~li~~~~~~g- 240 (670)
...|.++|+.....+ .+.+-...-.....+ +....+.+.|...|+.+.+ .+ .+.....+-.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g-~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG-HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhc-chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 467888888877653 111111111122223 5567789999999988876 44 2345666777777643
Q ss_pred ----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHH--hcCCHH
Q 005905 241 ----DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH-AGKVEAAFEILQEAKNQGISVGIISYSSLMGACS--NAKNWQ 313 (670)
Q Consensus 241 ----~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~-~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~--~~g~~~ 313 (670)
+.+.|+.+|.+.-+.|.+ +...+-..+..... ..+...|.++|...-+.|.. +..-+.+++-... -..+.+
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred CccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHH
Confidence 677899999998888864 55554444433333 35678999999999998842 2222222222111 234688
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 005905 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362 (670)
Q Consensus 314 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 362 (670)
.|...|.+.-+.| .|-...--..+..+.. +..+.+.-.+..+.+.|.
T Consensus 382 ~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 9999999988776 2222222222333444 777777777777776553
|
|
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=84.68 E-value=0.79 Score=38.66 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=33.8
Q ss_pred cccccCCCeeeccccCcchhhHHHHHHHHHHHHHhhhhCCCCCCceEeccCccc
Q 005905 526 CVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKT 579 (670)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~l~~~~~~~~~~p~~~~~l~~~~~ 579 (670)
+++|+..+.++.+|..||.. .+..++...+|+|++..++++.+.
T Consensus 2 ~~~w~~~h~F~sgd~shp~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 45 (116)
T PF14432_consen 2 GCSWIEVHSFVSGDRSHPQS----------ELINKMKEEGYVPDTKEVGHDVDE 45 (116)
T ss_pred CCCccceEEEEeCCCcCccH----------HHHHHHHHcCCcchhhhhCCCchh
Confidence 46777778899999999987 333456678999999888776554
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=84.62 E-value=11 Score=34.47 Aligned_cols=63 Identities=8% Similarity=0.096 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005905 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD--HITIGALMKACANAGQVDRAREVYKMIHK 219 (670)
Q Consensus 155 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd--~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 219 (670)
..+..+..-|.+.|+.+.|++.|.++... ...+. ...+-.+|....-.+++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~--~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDY--CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhh--cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34556666677777777777777776653 12222 22344555666666666666666555433
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=84.46 E-value=61 Score=34.54 Aligned_cols=162 Identities=13% Similarity=0.117 Sum_probs=86.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 005905 161 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 240 (670)
Q Consensus 161 i~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 240 (670)
|.-.-+..+...-+++=.+..+ +.||..+.-.+ -+--.+..+.+|+++|++..+.+- ..+..- ......|
T Consensus 175 Mq~AWRERnp~aRIkaA~eALe----i~pdCAdAYIL-LAEEeA~Ti~Eae~l~rqAvkAgE----~~lg~s-~~~~~~g 244 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALE----INPDCADAYIL-LAEEEASTIVEAEELLRQAVKAGE----ASLGKS-QFLQHHG 244 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHH----hhhhhhHHHhh-cccccccCHHHHHHHHHHHHHHHH----Hhhchh-hhhhccc
Confidence 3333455555555555555554 45664433222 222345668889999888776541 111100 0000111
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-ccHHHHHHHHHHHHhcCCHHHHHHHH
Q 005905 241 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS-VGIISYSSLMGACSNAKNWQKALELY 319 (670)
Q Consensus 241 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~ 319 (670)
. .++.+..+...|-..+=..+..++-+.|+.++|.+.+++|.+.... ....+.-.|+.++...+.+.++..++
T Consensus 245 ~------~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 245 H------FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred c------hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 1 1122222222222333344555666778888888888888764322 23446667888888888888888888
Q ss_pred HHHHhCCC-CCCHHHHHHHH
Q 005905 320 EHMKSIKL-KPTVSTMNALI 338 (670)
Q Consensus 320 ~~m~~~~~-~p~~~~~~~li 338 (670)
.+-.+... +.-..+|+..+
T Consensus 319 ~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 319 AKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHhccccCCchHHHHHHHHH
Confidence 87654322 22344566544
|
The molecular function of this protein is uncertain. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=84.43 E-value=2 Score=27.36 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=12.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 005905 157 FNALITACGQSGAVDRAFDVLAE 179 (670)
Q Consensus 157 ~~~li~~~~~~g~~~~A~~l~~~ 179 (670)
|+.|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555556666666666666655
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.40 E-value=13 Score=36.61 Aligned_cols=105 Identities=11% Similarity=0.093 Sum_probs=70.2
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 005905 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG---ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331 (670)
Q Consensus 255 ~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 331 (670)
.|......+...++.......+++.+...+-.++... ..++...+ +.++.|.+ -+.+++..++..=...|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlllk-y~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHHc-cChHHHHHHHhCcchhccccch
Confidence 3444455666666666666677888877777665432 12222222 23333333 3566888888877788888999
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 005905 332 STMNALITALCDGDQLPKTMEVLSDMKSLG 361 (670)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 361 (670)
.+++.+|+.+.+.+++.+|.++...|....
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999998888888876543
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=83.83 E-value=31 Score=30.75 Aligned_cols=18 Identities=22% Similarity=0.538 Sum_probs=8.4
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 005905 237 SQTGDWEFACSVYDDMTK 254 (670)
Q Consensus 237 ~~~g~~~~A~~l~~~m~~ 254 (670)
.+.|+|.+|..+|+++..
T Consensus 55 i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 55 IVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHhCCHHHHHHHHHHHhc
Confidence 344445555555544433
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=83.77 E-value=2.4 Score=26.99 Aligned_cols=26 Identities=19% Similarity=0.161 Sum_probs=21.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHH
Q 005905 94 TFNMLMSVCASSKDSEGAFQVLRLVQ 119 (670)
Q Consensus 94 ~y~~li~~~~~~g~~~~A~~~~~~m~ 119 (670)
+|+.|...|.+.|++++|+.+|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47888999999999999999999855
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.25 E-value=85 Score=35.30 Aligned_cols=77 Identities=9% Similarity=0.053 Sum_probs=43.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHhhhhhHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCCH
Q 005905 31 SYNRLIRQGRISECIDLLEDMERKGLLDM--DKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDS 108 (670)
Q Consensus 31 ~~~~l~~~g~~~~A~~l~~~m~~~g~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~ 108 (670)
.++-+++.+.+++|++.-+..... .|. ..-....++.-+...|++++|-...-.|...+..-|.--+..++..++.
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQL 439 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhcccccc
Confidence 456688889999998887665432 221 1222223333344556677776665555555555555555555555544
Q ss_pred H
Q 005905 109 E 109 (670)
Q Consensus 109 ~ 109 (670)
.
T Consensus 440 ~ 440 (846)
T KOG2066|consen 440 T 440 (846)
T ss_pred c
Confidence 3
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=82.74 E-value=36 Score=30.70 Aligned_cols=133 Identities=10% Similarity=0.102 Sum_probs=75.5
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 005905 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325 (670)
Q Consensus 246 ~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 325 (670)
.+.++.+.+.++.|+...+..+++.+.+.|.+.... ++...++-+|.......+-.+. +.+..+.++=-+|...
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 355666777888888889999999998888865443 4444555555443333332222 2223333333333311
Q ss_pred CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005905 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392 (670)
Q Consensus 326 ~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 392 (670)
=...+..++..+...|++-+|+++.+..... +......++.|..+.++...-..+|+-.
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1114566777888889998888888775321 1122234556666666654444444333
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=82.57 E-value=13 Score=32.66 Aligned_cols=90 Identities=11% Similarity=0.049 Sum_probs=54.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCCCCC-HHHHHHHHHHHHcCCCHHHHHHHH
Q 005905 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT-LSTFNMLMSVCASSKDSEGAFQVL 115 (670)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~y~~li~~~~~~g~~~~A~~~~ 115 (670)
..++.+++..+++.|.-.. |....+...-..++...|++.+|.++|+.+.... ...|...+.++|-.-.-+-..+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLr--P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~Wr~~ 99 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLR--PNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEWHVH 99 (153)
T ss_pred hcCCHHHHHHHHHHHHHhC--CCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHHHHH
Confidence 5788888888888886554 6666665555667778888888988888876432 334544444444322222223322
Q ss_pred -HHHHHcCCCCCHH
Q 005905 116 -RLVQEAGLKADCK 128 (670)
Q Consensus 116 -~~m~~~g~~pd~~ 128 (670)
+.++..|-.|+..
T Consensus 100 A~~~le~~~~~~a~ 113 (153)
T TIGR02561 100 ADEVLARDADADAV 113 (153)
T ss_pred HHHHHHhCCCHhHH
Confidence 4455555445444
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=82.20 E-value=46 Score=37.04 Aligned_cols=146 Identities=10% Similarity=0.109 Sum_probs=28.3
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005905 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326 (670)
Q Consensus 247 ~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 326 (670)
...++++.+-...+.....-++..|.+.|-.+.|.++.+.+-..-. ...-|..-+..+.++|+......+-..+.
T Consensus 391 ~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll--- 465 (566)
T PF07575_consen 391 ERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL--- 465 (566)
T ss_dssp HHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH---
Confidence 3344444333334555566666777777777777766665543311 12234444455555555544444433333
Q ss_pred CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 005905 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC---ERKDDVEVGLMLLSQAKEDGVIPNLVM 403 (670)
Q Consensus 327 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~---~~~g~~~~a~~~~~~m~~~g~~p~~~~ 403 (670)
..|+..|... ..++.+.+...-+-.+..+|...+.-+ .+.|+..+|.+.+-.+.+.++.|....
T Consensus 466 ------------~~~~~~~~~~-~~~ll~~i~~~~~~~~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~ 532 (566)
T PF07575_consen 466 ------------EEYCNNGEPL-DDDLLDNIGSPMLLSQRLSFLAKYREFYELYDEGDFREAASLLVSLLKSPIAPKSFW 532 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------HHHhcCCCcc-cHHHHHHhcchhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCCCcHHHH
Confidence 2333333211 122222211111111222222222211 244777778777777777777777665
Q ss_pred HHHHHHH
Q 005905 404 FKCIIGM 410 (670)
Q Consensus 404 ~~~li~~ 410 (670)
..-|.++
T Consensus 533 ~~LL~d~ 539 (566)
T PF07575_consen 533 PLLLCDA 539 (566)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 5555554
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=82.16 E-value=34 Score=29.91 Aligned_cols=78 Identities=14% Similarity=0.077 Sum_probs=54.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005905 161 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 238 (670)
Q Consensus 161 i~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 238 (670)
.....+.|++++|.+.|+.+...-..-.-....-..++.+|.+.++++.|...++..++........-|-..+.+++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 344567899999999999998762111122345667889999999999999999999887633222445544555443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=80.92 E-value=1.3e+02 Score=35.75 Aligned_cols=138 Identities=22% Similarity=0.270 Sum_probs=92.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 005905 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI----GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231 (670)
Q Consensus 156 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 231 (670)
.|.-.++---+.|.+.+|+.++ .|+...+ .+....+.....+++|--.|+..-+. .-
T Consensus 910 ~~~e~~n~I~kh~Ly~~aL~ly----------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ek 970 (1265)
T KOG1920|consen 910 YFPECKNYIKKHGLYDEALALY----------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EK 970 (1265)
T ss_pred ccHHHHHHHHhcccchhhhhee----------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HH
Confidence 4445555556677788887765 3444444 44445555678888888888665332 23
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc
Q 005905 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEV--FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309 (670)
Q Consensus 232 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~ 309 (670)
.+.+|..+|+|.+|+.+..+|.... |.. +-..|+.-+...++.-+|-++..+.... | .-.+..|++.
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~~~---de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka 1039 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSEGK---DELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKA 1039 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcCCH---HHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhH
Confidence 5778889999999999998875431 222 2256777888889988888888776543 1 2344567788
Q ss_pred CCHHHHHHHHHHHH
Q 005905 310 KNWQKALELYEHMK 323 (670)
Q Consensus 310 g~~~~A~~~~~~m~ 323 (670)
..|++|.++-..-.
T Consensus 1040 ~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1040 KEWEEALRVASKAK 1053 (1265)
T ss_pred hHHHHHHHHHHhcc
Confidence 88999988876544
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.61 E-value=1e+02 Score=34.50 Aligned_cols=303 Identities=14% Similarity=0.108 Sum_probs=163.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--HHHh----cC---CCCHHHHHHHHHHHHhc
Q 005905 97 MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD--AMFE----NV---KPDRVVFNALITACGQS 167 (670)
Q Consensus 97 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~--~~~~----~~---~~~~~~~~~li~~~~~~ 167 (670)
.+|.-+...+.+..|+++-..+...-..- ..+|.....-+.+..+.. .+.+ .+ ....++|..+.+-....
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQE 520 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhc
Confidence 45666777788888888876664322222 566777777776664321 1222 11 24567788888888889
Q ss_pred CCHHHHHHHHHHHhhCCCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005905 168 GAVDRAFDVLAEMNAEVHPVD--PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245 (670)
Q Consensus 168 g~~~~A~~l~~~m~~~~~~~~--pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 245 (670)
|+.+-|..+++.=...+..+. .+..-+...+.-+...|+.+....++-.+.+.- +...+... ..+...|
T Consensus 521 GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~~~------l~~~p~a 591 (829)
T KOG2280|consen 521 GRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLFMT------LRNQPLA 591 (829)
T ss_pred CcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHHHH------HHhchhh
Confidence 999999888764322211100 011123344555666677777766666555431 11122211 2234556
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH-H----HCCCCccHHHHHHHHHHHHhcCCHH-------
Q 005905 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA-K----NQGISVGIISYSSLMGACSNAKNWQ------- 313 (670)
Q Consensus 246 ~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m-~----~~~~~~~~~~~~~li~~~~~~g~~~------- 313 (670)
..+|.+..+.. |.. .+-+.|-...+...+-.++-+- . ..+..|+ .......|++.....
T Consensus 592 ~~lY~~~~r~~---~~~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~e 662 (829)
T KOG2280|consen 592 LSLYRQFMRHQ---DRA---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALE 662 (829)
T ss_pred hHHHHHHHHhh---chh---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHH
Confidence 67776655431 111 1222333333333222222211 0 1122232 233444455444321
Q ss_pred ---HHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005905 314 ---KALELYEHMK-SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389 (670)
Q Consensus 314 ---~A~~~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 389 (670)
+-.++++.+. +.+..-.--|.+--+.-+...|+-.+|.++-.+.+ -||...|..=+.+++..+++++-.++-
T Consensus 663 d~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfA 738 (829)
T KOG2280|consen 663 DQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFA 738 (829)
T ss_pred HHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHH
Confidence 1122222222 12323344456666777888999999999888776 589999999999999999999988877
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhhHHHHHHhHHHhhhhcCCC
Q 005905 390 SQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGR 432 (670)
Q Consensus 390 ~~m~~~g~~p~~~~~~~li~~~~r~~~~a~~l~~a~~~~~~~~ 432 (670)
+.++. +.-|.-++..|.+ ++...||...+....
T Consensus 739 kskks------PIGy~PFVe~c~~----~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 739 KSKKS------PIGYLPFVEACLK----QGNKDEAKKYIPRVG 771 (829)
T ss_pred hccCC------CCCchhHHHHHHh----cccHHHHhhhhhccC
Confidence 65543 2334456666654 344444444444433
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 81.0 bits (198), Expect = 6e-16
Identities = 33/240 (13%), Positives = 78/240 (32%), Gaps = 4/240 (1%)
Query: 226 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 285
E + + + ++ + + L A ++ A +L
Sbjct: 92 EEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLV 151
Query: 286 EAKNQ---GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342
Q + + Y+++M + +++ + + +K L P + + A + +
Sbjct: 152 VHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMG 211
Query: 343 DGDQLPKTME-VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 401
DQ T+E L M GL + ++LL +R ++ + +P
Sbjct: 212 RQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPP 271
Query: 402 VMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEV 461
V ++ + + H+ + LA V ++ T+P+ EV
Sbjct: 272 VNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEV 331
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 76.4 bits (186), Expect = 2e-14
Identities = 25/184 (13%), Positives = 61/184 (33%), Gaps = 4/184 (2%)
Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG---TPEVYTIAINCCSQTGDWE 243
+ + A K C Q+ A + + H K T ++Y + ++ G ++
Sbjct: 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFK 182
Query: 244 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK-VEAAFEILQEAKNQGISVGIISYSSL 302
V + G+ PD + +A + G + L++ +G+ + + + L
Sbjct: 183 ELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVL 242
Query: 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
+ A + ++ P + L+ + D ++ +K+L
Sbjct: 243 LSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQC 302
Query: 363 CPNT 366
Sbjct: 303 LFEK 306
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 69.8 bits (169), Expect = 2e-12
Identities = 21/194 (10%), Positives = 52/194 (26%), Gaps = 14/194 (7%)
Query: 88 PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
+P L+ + +A L + C + ++
Sbjct: 88 ESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAH 147
Query: 148 E-----------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
++NA++ + GA VL + + PD ++ A
Sbjct: 148 HLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG--LTPDLLSYAA 205
Query: 197 LMKACANAGQVDRA-REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
++ Q + + + +K + ++ + + V +
Sbjct: 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLP 265
Query: 256 GVIPDEVFLSALID 269
+P V S L+
Sbjct: 266 PQLPPPVNTSKLLR 279
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 60.2 bits (144), Expect = 2e-09
Identities = 28/201 (13%), Positives = 65/201 (32%), Gaps = 3/201 (1%)
Query: 279 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 338
A + + S + L+ + +L + A
Sbjct: 75 MAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFF 134
Query: 339 TALCDGDQLPKTMEVL---SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395
DQLP +L + Y+ +++ R+ + + +L K+
Sbjct: 135 KCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA 194
Query: 396 GVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGT 455
G+ P+L+ + + R+ + A T+ + + +++ +T++ L A V
Sbjct: 195 GLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKA 254
Query: 456 IPTVEVVSKVLGCLQLPYNAD 476
+ V+ + L P N
Sbjct: 255 VHKVKPTFSLPPQLPPPVNTS 275
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 46.3 bits (108), Expect = 3e-05
Identities = 20/110 (18%), Positives = 33/110 (30%), Gaps = 8/110 (7%)
Query: 48 LEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN-------PTLSTFNMLMS 100
+ L + A FF C + A + TL +N +M
Sbjct: 115 SGQHSQAQLSGQQQRLLA-FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVML 173
Query: 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENV 150
A + VL +V++AGL D Y + + + E
Sbjct: 174 GWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC 223
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.5 bits (169), Expect = 2e-12
Identities = 87/631 (13%), Positives = 173/631 (27%), Gaps = 217/631 (34%)
Query: 18 HANYAH---DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ 74
H ++ H + E + Y D+L E + + D +V
Sbjct: 1 HHHHHHMDFETGEHQYQYK------------DILSVFEDAFVDNFD------CKDVQDMP 42
Query: 75 KAI--KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
K+I KE + + T + ++ + ++ V + V+E L+ + Y
Sbjct: 43 KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE-----MVQKFVEEV-LRIN---YKF 93
Query: 133 LITTCAKSGKVDAMFENVKP--DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 190
L++ E +P ++ DR ++ +
Sbjct: 94 LMSPIKT--------EQRQPSMMTRMYIE---------QRDRLYN-------DNQVFAKY 129
Query: 191 HITIGALMKACANAGQVDRARE---VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
+++ A R + + + G +G A
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLIDGV------LG--------------SGKTWVALD 169
Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
V + + ++F ++ + E E+LQ L
Sbjct: 170 VCLSYKVQCKMDFKIF---WLNL-KNCNSPETVLEMLQ---------------KL---LY 207
Query: 308 NA-KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
NW +H +IKL S L L + VL ++++
Sbjct: 208 QIDPNWT---SRSDHSSNIKL-RIHSIQAELRRLLKS-KPYENCLLVLLNVQN----AKA 258
Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVL 426
++C+ ++L ++ FK + S +L+ H +
Sbjct: 259 WNA--FNLSCK--------ILLTTR------------FKQVTDFLSAATTTHISLDHHSM 296
Query: 427 SFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGC--LQLPYNADIRERLVEN 484
+ E ++ K L C LP RE
Sbjct: 297 TLTP-----------------DE--------VKSLLLKYLDCRPQDLP-----RE----- 321
Query: 485 LGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVS--FKEIPVVVDARKLE 542
L + PR S++ A S +K V+ KL
Sbjct: 322 ------VLTTN-------------PRRLSII--AESIRDGLATWDNWKH----VNCDKLT 356
Query: 543 IHTAKVYLLTILK--GLRHRLAAGAKLP-NVNILLPVEKTQIMSVGGEKTI--DIAERTT 597
+ L +L+ R + P + +I P T ++S+ I D+ +
Sbjct: 357 -TIIESS-LNVLEPAEYRKMFDRLSVFPPSAHI--P---TILLSL-----IWFDVIKSDV 404
Query: 598 QAIAALLRRLGLPYQGNGSYGKIRINGLALK 628
+ L + L + I I + L+
Sbjct: 405 MVVVNKLHKYSL-VEKQPKESTISIPSIYLE 434
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 6e-08
Identities = 72/491 (14%), Positives = 126/491 (25%), Gaps = 198/491 (40%)
Query: 23 HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFR 82
H + +L RL++ C LL + V +A+ AF
Sbjct: 228 HSIQAEL---RRLLKSKPYENC-----------LLVLLNVQNAK----------AWNAFN 263
Query: 83 FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
CK L+TT
Sbjct: 264 L------------------------------------------SCK---ILLTT------ 272
Query: 143 VDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA-----------------EVH 185
+ V + L A ++D L EV
Sbjct: 273 ---------RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323
Query: 186 PVDPDHIT-IGALMKACANAGQVDRAR-EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 243
+P ++ I ++ A + +K N + ++N E
Sbjct: 324 TTNPRRLSIIAESIR-------DGLATWDNWK---HVNCDKLTTIIESSLNVLEPA---E 370
Query: 244 F-----ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 298
+ SV+ IP + LS + ++ +
Sbjct: 371 YRKMFDRLSVFPPSAH---IPTIL-LSLIWF----DVIKSDVMVVVNKLHK--------- 413
Query: 299 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358
SL + K + ++LK + AL ++ D +PK
Sbjct: 414 -YSL------VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK--------- 457
Query: 359 SLGLCPNTIT--------YSIL---LVACERKDDVEVGLMLLS-----QAK--------- 393
+ + YS + L E + + + M+ + K
Sbjct: 458 --TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWN 515
Query: 394 EDGVIPNLVM----FKCIIGMCSRRYEKARTLNEHVLSF--NSGRPQIENKWTSL---AL 444
G I N + +K I +YE R +N +L F I +K+T L AL
Sbjct: 516 ASGSILNTLQQLKFYKPYICDNDPKYE--RLVNA-ILDFLPKIEENLICSKYTDLLRIAL 572
Query: 445 M-----VYREA 450
M ++ EA
Sbjct: 573 MAEDEAIFEEA 583
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 42.2 bits (98), Expect = 5e-04
Identities = 17/132 (12%), Positives = 46/132 (34%), Gaps = 8/132 (6%)
Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
+ ++ +Y + VY + + + ++ + V++
Sbjct: 335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYV 394
Query: 265 -SALIDFAGHAGKVEAAFEILQEAKNQGISVG--IISYSSLMGACSNAKNWQKALELYEH 321
+AL+++ + AF+I + + + +++Y + S+ L+E
Sbjct: 395 TAALMEYY-CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYL---SHLNEDNNTRVLFER 450
Query: 322 -MKSIKLKPTVS 332
+ S L P S
Sbjct: 451 VLTSGSLPPEKS 462
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 670 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.86 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.86 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.86 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.82 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.8 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.79 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.79 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.77 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.74 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.73 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.73 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.72 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.68 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.68 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.68 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.66 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.66 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.65 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.65 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.65 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.65 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.62 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.62 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.61 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.59 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.59 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.55 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.54 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.53 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.51 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.5 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.5 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.49 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.48 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.48 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.47 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.47 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.47 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.46 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.45 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.43 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.43 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.42 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.41 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.4 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.39 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.38 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.37 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.36 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.32 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.31 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.28 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.27 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.27 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.27 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.23 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.22 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.21 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.2 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.19 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.19 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.17 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.16 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.16 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.16 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.16 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.14 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.08 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.08 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.08 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.07 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.06 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.01 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.01 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.01 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.99 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.97 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.95 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.9 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.88 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.87 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.86 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.84 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.8 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.79 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.75 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.72 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.72 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.7 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.68 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.65 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.63 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.6 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.6 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.59 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.59 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.58 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.57 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.57 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.56 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.54 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.53 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.53 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.51 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.5 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.48 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.47 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.47 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.41 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.4 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.39 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.36 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.34 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.33 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.33 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.32 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.32 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.31 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.26 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.25 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.25 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.23 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.23 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.23 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.23 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.21 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.21 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.21 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.19 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.18 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.16 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.15 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.14 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.14 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.13 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.1 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.08 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.08 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.08 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.05 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.04 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.04 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.03 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.03 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.02 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.0 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.99 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.98 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.96 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.92 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.92 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.91 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.89 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.87 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.87 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.86 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.86 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.86 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.85 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.85 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.85 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.83 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.82 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.81 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.81 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.79 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.72 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.69 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.66 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.65 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.63 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.62 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.53 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.51 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.51 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.51 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.48 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.43 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.43 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.4 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.4 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.4 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.38 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.37 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.31 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.21 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.17 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.12 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.11 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.08 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.01 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.97 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 96.94 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 96.89 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.86 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.83 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.8 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.71 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.61 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.54 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.3 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.25 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.23 | |
| 3fau_A | 82 | NEDD4-binding protein 2; SMR, small-MUTS related d | 95.94 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 95.58 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.38 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.33 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.33 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 95.28 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.14 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.09 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 94.98 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 94.4 | |
| 2d9i_A | 96 | NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 | 94.13 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.12 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 93.78 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 93.74 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 93.65 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 92.81 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 92.45 | |
| 2vkc_A | 135 | NEDD4-binding protein 2; human BCL3 binding protei | 92.29 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 92.26 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 92.18 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 91.76 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 91.67 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 91.57 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 91.06 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 89.64 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 89.32 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 88.71 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 87.54 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 87.5 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 85.23 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 84.78 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 84.18 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 83.62 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-31 Score=293.47 Aligned_cols=427 Identities=11% Similarity=0.011 Sum_probs=323.7
Q ss_pred hhHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhC--CCCCHHHHHHHHH
Q 005905 27 EQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV--PNPTLSTFNMLMS 100 (670)
Q Consensus 27 ~~~~~~~~l~----~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~y~~li~ 100 (670)
+....|+.++ +.|++++|+.+|++|.... |... ....++..+...|++++|+.+|+.+ .+++..+++.++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 158 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT--GNPN-DAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAF 158 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CCHH-HHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC--CCch-HHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHH
Confidence 4555666555 6899999999999998655 5443 3445788888899999999999988 4678889999999
Q ss_pred HHHcCCCHHHHHHHHHHHHHc---------------CCCCCHHHHHHHHHHHHhcCCHHHHHh------cCCC-CHHH--
Q 005905 101 VCASSKDSEGAFQVLRLVQEA---------------GLKADCKLYTTLITTCAKSGKVDAMFE------NVKP-DRVV-- 156 (670)
Q Consensus 101 ~~~~~g~~~~A~~~~~~m~~~---------------g~~pd~~~~~~li~~~~~~g~~~~~~~------~~~~-~~~~-- 156 (670)
+|.+.|++++|+.+|+++... |.+++..+|+.++.+|.+.|+++++.+ ...| +...
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 238 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFD 238 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHH
Confidence 999999999999999853211 223457889999999999999887554 1123 2333
Q ss_pred ------------------------------------HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHH
Q 005905 157 ------------------------------------FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200 (670)
Q Consensus 157 ------------------------------------~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~ 200 (670)
|+.++..|.+.|++++|.++|+++... .++..++..++.+
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~l~~~ 314 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL----EKSSDLLLCKADT 314 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG----GGCHHHHHHHHHH
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC----CchHHHHHHHHHH
Confidence 333355677788899999999888753 5788899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 005905 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 280 (670)
Q Consensus 201 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 280 (670)
|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|..+|+++.+.. +.+..++..++.+|.+.|++++|
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEA 392 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHH
Confidence 999999999999999988766 4567788999999999999999999999988654 34788888899999999999999
Q ss_pred HHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 005905 281 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360 (670)
Q Consensus 281 ~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 360 (670)
.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|++|.+.
T Consensus 393 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 393 RRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999888754 4567889999999999999999999999888765 347888999999999999999999999998875
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhhHHHHHHhHHHhhhhcCCCcc
Q 005905 361 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKED----GVIPN--LVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQ 434 (670)
Q Consensus 361 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~----g~~p~--~~~~~~li~~~~r~~~~a~~l~~a~~~~~~~~~~ 434 (670)
. +.+..+|..+...|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+ .++
T Consensus 471 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~----~g~-------------- 531 (597)
T 2xpi_A 471 F-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK----LKM-------------- 531 (597)
T ss_dssp C-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH----TTC--------------
T ss_pred C-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH----hcC--------------
Confidence 2 446888999999999999999999999888775 66787 7788888888765 111
Q ss_pred chhhhHHHHHHHHHHHHHcCCCC-cHHHHHHHHhhcc-CCCchhHHHHHHHhcCCCcc
Q 005905 435 IENKWTSLALMVYREAIVAGTIP-TVEVVSKVLGCLQ-LPYNADIRERLVENLGVSAD 490 (670)
Q Consensus 435 ~~~~~~~~A~~~~~~m~~~~~~P-~~~~~~~ll~~~~-~~~~~~~~~~~~~~~~~~~~ 490 (670)
..+|+..|+++++.+ | +..++..+..++. .+...+..+.+.+.+.+.|+
T Consensus 532 -----~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 532 -----YDAAIDALNQGLLLS--TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp -----HHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred -----HHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 224555666666543 4 3444444443333 33334444444445545553
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-29 Score=282.86 Aligned_cols=372 Identities=7% Similarity=-0.060 Sum_probs=318.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCCCC-------------------
Q 005905 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP------------------- 90 (670)
Q Consensus 30 ~~~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------------- 90 (670)
.....+.+.|++++|+.+|+++... |.+......++..+.+.|++++|+++|+.+.+.
T Consensus 122 ~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (597)
T 2xpi_A 122 WLAQVYCCTGDYARAKCLLTKEDLY---NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKL 198 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccch
Confidence 3344555899999999999998654 445556667888999999999999999954333
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHH-------------------------------------
Q 005905 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL------------------------------------- 133 (670)
Q Consensus 91 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l------------------------------------- 133 (670)
+..+|+.++.+|.+.|++++|+.+|++|.+.+. .+...+..+
T Consensus 199 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 277 (597)
T 2xpi_A 199 EASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYML 277 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHH
Confidence 488999999999999999999999999998752 233343333
Q ss_pred -HHHHHhcCCHHHHHh---c-C--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005905 134 -ITTCAKSGKVDAMFE---N-V--KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206 (670)
Q Consensus 134 -i~~~~~~g~~~~~~~---~-~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~ 206 (670)
+.+|.+.|+++++.+ . . .++..+|+.++.+|.+.|++++|+++|+++...+ +.+..++..++.+|.+.|+
T Consensus 278 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~ 354 (597)
T 2xpi_A 278 KLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID---PYNLDVYPLHLASLHESGE 354 (597)
T ss_dssp TSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCCTTHHHHHHHHHHHTC
T ss_pred HHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC---cccHHHHHHHHHHHHHhCC
Confidence 445556677766543 2 2 4899999999999999999999999999998752 3467789999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 005905 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286 (670)
Q Consensus 207 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~ 286 (670)
+++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.... +..+|..++.+|.+.|++++|.++|++
T Consensus 355 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 432 (597)
T 2xpi_A 355 KNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTT 432 (597)
T ss_dssp HHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999998765 678899999999999999999999999999886543 788999999999999999999999999
Q ss_pred HHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhC----CC
Q 005905 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL----GL 362 (670)
Q Consensus 287 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~ 362 (670)
+.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|+++|+++.+. +.
T Consensus 433 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 510 (597)
T 2xpi_A 433 AARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS 510 (597)
T ss_dssp HHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcccc
Confidence 99876 5678999999999999999999999999998765 348999999999999999999999999999875 77
Q ss_pred CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005905 363 CPN--TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413 (670)
Q Consensus 363 ~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r 413 (670)
.|+ ..+|..+..+|.+.|++++|.++|+++.+.+ +.+..+|..+..+|.+
T Consensus 511 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~ 562 (597)
T 2xpi_A 511 NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLH 562 (597)
T ss_dssp CSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 888 7899999999999999999999999998865 3478888888888654
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-30 Score=279.61 Aligned_cols=204 Identities=15% Similarity=0.240 Sum_probs=141.5
Q ss_pred HHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------hHH
Q 005905 210 AREVYKMIHKYNIKGTP-EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK---------VEA 279 (670)
Q Consensus 210 A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~---------~~~ 279 (670)
+..+.+++.+.+....+ .+++.+|++|++.|++++|+++|++|.+.|+.||..||++||.+|++.+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 34444555555554443 34666777777777777777777777777777777777777777765543 567
Q ss_pred HHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 280 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 280 A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..|||+||.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005905 360 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413 (670)
Q Consensus 360 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r 413 (670)
.|+.||..||++||.+|++.|++++|.++|++|.+.|+.|+..||+.++..+..
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 777777777777777777777777777777777777777777777777776653
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-30 Score=276.60 Aligned_cols=208 Identities=17% Similarity=0.260 Sum_probs=180.0
Q ss_pred HHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---------
Q 005905 171 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD--------- 241 (670)
Q Consensus 171 ~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--------- 241 (670)
..+..+.+++.+.+....| ...++.+|++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+.
T Consensus 7 s~~e~L~~~~~~k~~~~sp-e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~ 85 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSP-EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPG 85 (501)
T ss_dssp -----------------CH-HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHH
T ss_pred chHHHHHHHHHHhcccCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcch
Confidence 3445556666655322223 346788899999999999999999999999999999999999999987664
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005905 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321 (670)
Q Consensus 242 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 321 (670)
+++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 005905 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379 (670)
Q Consensus 322 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 379 (670)
|.+.|+.||..||++||.+|++.|+.++|.++|++|++.|..|+..||+.++..|+..
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999988754
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-23 Score=219.72 Aligned_cols=352 Identities=12% Similarity=0.061 Sum_probs=307.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhC---CCCCHHHHHHHHHHHHcCCCHH
Q 005905 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSE 109 (670)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~y~~li~~~~~~g~~~ 109 (670)
..+.+.|++++|++.|+++.+.. |.+......+...+...|++++|..+++.. .+.+..+|..+..++.+.|+++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 34568999999999999999887 777777777888889999999999998764 3567889999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHh------cCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 005905 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE------NVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNA 182 (670)
Q Consensus 110 ~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~------~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 182 (670)
+|+..|+++.+.. +.+..+|..+..++.+.|+++++.+ ...| +...+..+...|...|++++|.++|+++..
T Consensus 85 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 85 EAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999999999863 3456689999999999999887654 2234 566788888999999999999999999987
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 005905 183 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262 (670)
Q Consensus 183 ~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 262 (670)
.. +.+..+|..+...+...|++++|...|+++.+.+ +.+...|..+...+...|++++|...|++..+.... +..
T Consensus 164 ~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~ 238 (388)
T 1w3b_A 164 TQ---PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAV 238 (388)
T ss_dssp HC---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHH
T ss_pred hC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHH
Confidence 52 3347889999999999999999999999999876 567889999999999999999999999999887543 678
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005905 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342 (670)
Q Consensus 263 t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 342 (670)
++..+..+|...|++++|.+.++.+.+.. +.+..+|..+..+|.+.|++++|...|+++.+.. +.+..+|+.+...+.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHH
Confidence 89999999999999999999999999875 4567889999999999999999999999998765 458899999999999
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 343 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 343 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 395 (670)
+.|++++|++.|+++.+. .+.+..++..+..++.+.|++++|...|+++.+.
T Consensus 317 ~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999875 2446788999999999999999999999999874
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=6.3e-21 Score=200.44 Aligned_cols=340 Identities=14% Similarity=0.058 Sum_probs=289.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC---CCCHHHHHHHHHHHHcC
Q 005905 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASS 105 (670)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~ 105 (670)
...-..+.+.|++++|...++...+.. |.+...+..+...+...|++++|+..|+.+. +.+..+|..+..++.+.
T Consensus 37 ~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 114 (388)
T 1w3b_A 37 LLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAA 114 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHc
Confidence 333344458999999999999999876 7777777778999999999999999998763 45677899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHh-------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005905 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-------NVKPDRVVFNALITACGQSGAVDRAFDVLA 178 (670)
Q Consensus 106 g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 178 (670)
|++++|...|+++.+.. +.+...+..+...|...|+++++.+ ..+.+..+|+.+...|.+.|++++|+..|+
T Consensus 115 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 193 (388)
T 1w3b_A 115 GDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFE 193 (388)
T ss_dssp SCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999874 3345667888889999999987654 234468899999999999999999999999
Q ss_pred HHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 005905 179 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258 (670)
Q Consensus 179 ~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 258 (670)
++.... +.+...|..+...+...|++++|...|++..+.. +.+..++..+..+|.+.|++++|...|+++.+.+..
T Consensus 194 ~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 269 (388)
T 1w3b_A 194 KAVTLD---PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH 269 (388)
T ss_dssp HHHHHC---TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHhcC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 998752 3346778889999999999999999999998875 567889999999999999999999999999987643
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005905 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 338 (670)
Q Consensus 259 p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 338 (670)
+..++..+..++.+.|++++|.+.++++.+.. +.+..+++.+...|.+.|++++|...|+++.+.. +.+..+|..+.
T Consensus 270 -~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 346 (388)
T 1w3b_A 270 -FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLA 346 (388)
T ss_dssp -CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 67789999999999999999999999999875 6778999999999999999999999999998764 34688999999
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC
Q 005905 339 TALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKD 380 (670)
Q Consensus 339 ~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g 380 (670)
..|.+.|++++|++.|+++.+. .|+ ...|..+...+...|
T Consensus 347 ~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 347 SVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 9999999999999999999874 554 555655555554443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-18 Score=186.80 Aligned_cols=316 Identities=12% Similarity=0.023 Sum_probs=248.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCC
Q 005905 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSK 106 (670)
Q Consensus 30 ~~~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~g 106 (670)
..-..+.+.|++++|+.+|+++.+.. |.+...+..+...+...|++++|+..|+.+. +.+..+|..+..++.+.|
T Consensus 31 ~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 108 (450)
T 2y4t_A 31 ELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQG 108 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 33344558899999999999988775 6666666667788888889999998888653 456778888888999999
Q ss_pred CHHHHHHHHHHHHHcCCCCC-H---HHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 005905 107 DSEGAFQVLRLVQEAGLKAD-C---KLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 182 (670)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~pd-~---~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 182 (670)
++++|...|+++.+.. |+ . ..+..+...+... .+..+...|.+.|++++|+.+|+++..
T Consensus 109 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~---------------~~~~~a~~~~~~~~~~~A~~~~~~~~~ 171 (450)
T 2y4t_A 109 KLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQ---------------RLRSQALNAFGSGDYTAAIAFLDKILE 171 (450)
T ss_dssp CHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999888753 44 3 5566665554322 344556678899999999999999987
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 005905 183 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262 (670)
Q Consensus 183 ~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 262 (670)
. .+.+...+..+..+|.+.|++++|.+.|+.+.+.. +.+..+|..+..+|...|++++|...|+++.+.... +..
T Consensus 172 ~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~ 246 (450)
T 2y4t_A 172 V---CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKR 246 (450)
T ss_dssp H---CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHH
T ss_pred h---CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHH
Confidence 5 24467888999999999999999999999998865 567899999999999999999999999999876433 444
Q ss_pred HHHHH------------HHHHHhcCChHHHHHHHHHHHHCCCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005905 263 FLSAL------------IDFAGHAGKVEAAFEILQEAKNQGISVG----IISYSSLMGACSNAKNWQKALELYEHMKSIK 326 (670)
Q Consensus 263 t~~~l------------i~~~~~~g~~~~A~~i~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 326 (670)
.+..+ ...|.+.|++++|...++.+.+.... + ..++..+..+|.+.|++++|...++++.+..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 325 (450)
T 2y4t_A 247 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME 325 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 44444 77888899999999999998875422 2 4478888899999999999999999887654
Q ss_pred CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH-HHHHHHH
Q 005905 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITYSILL 373 (670)
Q Consensus 327 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll 373 (670)
+.+...|..+..+|...|++++|...|+++.+ +.|+. ..+..+.
T Consensus 326 -p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 326 -PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLE 370 (450)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 34788899999999999999999999999887 35653 4444443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3.6e-18 Score=182.93 Aligned_cols=298 Identities=12% Similarity=0.061 Sum_probs=229.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHh-------cCCCCHHHHHHHHHHH
Q 005905 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-------NVKPDRVVFNALITAC 164 (670)
Q Consensus 92 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~-------~~~~~~~~~~~li~~~ 164 (670)
...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..+|...|+++++.+ .-+.+..+|..+...|
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 3444555555555555555555555555432 2344455555555555555544332 1233567788888999
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCCCH----HHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 005905 165 GQSGAVDRAFDVLAEMNAEVHPVDPDH----ITIGAL------------MKACANAGQVDRAREVYKMIHKYNIKGTPEV 228 (670)
Q Consensus 165 ~~~g~~~~A~~l~~~m~~~~~~~~pd~----~t~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 228 (670)
.+.|++++|...|+++... .|+. ..+..+ ...+...|++++|...|+.+.+.. +.+..+
T Consensus 105 ~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 179 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKS----NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAEL 179 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTS----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHcCCHHHHHHHHHHHHhc----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 9999999999999999874 4553 445444 444889999999999999998875 668899
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHH------
Q 005905 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL------ 302 (670)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~l------ 302 (670)
+..+..+|.+.|++++|..+|+++.+... .+..++..+..+|...|++++|...++.+.+.. +.+...+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHH
Confidence 99999999999999999999999987654 378899999999999999999999999998764 3345555554
Q ss_pred ------HHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 005905 303 ------MGACSNAKNWQKALELYEHMKSIKLKPT-----VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371 (670)
Q Consensus 303 ------i~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 371 (670)
...|.+.|++++|...|+++.+.. |+ ...|..+...+.+.|++++|+..++++.+.. +.+...|..
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~ 334 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 889999999999999999998753 44 4578899999999999999999999988742 346889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 005905 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLV 402 (670)
Q Consensus 372 ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~ 402 (670)
+..+|...|++++|...|+++.+. .|+..
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~--~p~~~ 363 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEH--NENDQ 363 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT--SSSCH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHh--CcchH
Confidence 999999999999999999999884 46543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.4e-19 Score=192.02 Aligned_cols=374 Identities=11% Similarity=-0.020 Sum_probs=289.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhC---CCCCHHHHHHHHHHHHcC
Q 005905 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASS 105 (670)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~y~~li~~~~~~ 105 (670)
...-+.+.+.|++++|+..|+++...+ | +...+..+...+...|++++|+..|+.+ .+.+..+|..+..++...
T Consensus 10 ~~~g~~~~~~g~~~~A~~~~~~al~~~--p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 10 KDKGNQFFRNKKYDDAIKYYNWALELK--E-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHC--C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC--c-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 334456668999999999999999987 5 4556666888889999999999999865 345678999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcC-----------------------------------
Q 005905 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENV----------------------------------- 150 (670)
Q Consensus 106 g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~----------------------------------- 150 (670)
|++++|...|+++...+ +++......++..+.+......+.+.+
T Consensus 87 g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred hhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 99999999999999875 334444444444443322111111100
Q ss_pred -----------------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHhh-----C--CCCC----CCCHHHHHHHHH
Q 005905 151 -----------------KPDRVVFNALITACGQ---SGAVDRAFDVLAEMNA-----E--VHPV----DPDHITIGALMK 199 (670)
Q Consensus 151 -----------------~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~-----~--~~~~----~pd~~t~~~li~ 199 (670)
+.+...+..+...+.. .|++++|+.+|+++.. . .... +.+..++..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 1124445555555554 8999999999999886 2 1000 123456778888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 005905 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 279 (670)
Q Consensus 200 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 279 (670)
.+...|++++|...|+.+.+.... ..++..+..+|...|++++|...|+++.+.... +...+..+...|...|++++
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHH
Confidence 999999999999999999887633 889999999999999999999999999887543 66788899999999999999
Q ss_pred HHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 280 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 280 A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
|...++.+.+.. +.+..++..+...|...|++++|...|+++.+.. +.+...|..+...|...|++++|+..|+++..
T Consensus 323 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 323 AGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp HHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999876 4467788999999999999999999999988764 33678899999999999999999999999876
Q ss_pred CC-CCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005905 360 LG-LCPN----TITYSILLVACER---KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412 (670)
Q Consensus 360 ~g-~~p~----~~t~~~ll~a~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 412 (670)
.. -.|+ ...+..+..++.. .|++++|...|+.+.+.. +.+...+..+..++.
T Consensus 401 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 460 (514)
T 2gw1_A 401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKL 460 (514)
T ss_dssp HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 31 1122 3478888889999 999999999999998754 234555555555544
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.7e-17 Score=180.29 Aligned_cols=383 Identities=10% Similarity=0.011 Sum_probs=275.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCCH
Q 005905 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDS 108 (670)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~g~~ 108 (670)
-+.+.+.|++++|++.|+++.+.. |.+...+..+...+...|++++|++.|+... +.+..+|..+..++...|++
T Consensus 32 g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 109 (537)
T 3fp2_A 32 GNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNF 109 (537)
T ss_dssp HHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCH
Confidence 345558999999999999999987 7777888888889999999999999998763 55788899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHH--HH---------------------------------HHHHHHHhcCCHHHHHhcC---
Q 005905 109 EGAFQVLRLVQEAGLKADCKL--YT---------------------------------TLITTCAKSGKVDAMFENV--- 150 (670)
Q Consensus 109 ~~A~~~~~~m~~~g~~pd~~~--~~---------------------------------~li~~~~~~g~~~~~~~~~--- 150 (670)
++|+..|+.+ .. .|+... .. ..+..+....+.+......
T Consensus 110 ~~A~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (537)
T 3fp2_A 110 TDAMFDLSVL-SL--NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTS 186 (537)
T ss_dssp HHHHHHHHHH-C-------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCC
T ss_pred HHHHHHHHHH-hc--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhc
Confidence 9999999633 22 222111 11 1111122222222222211
Q ss_pred ---CCCHH-HHHHHHHHHHh--------cCCHHHHHHHHHHHhhCCCCCCCC--------HHHHHHHHHHHHHcCCHHHH
Q 005905 151 ---KPDRV-VFNALITACGQ--------SGAVDRAFDVLAEMNAEVHPVDPD--------HITIGALMKACANAGQVDRA 210 (670)
Q Consensus 151 ---~~~~~-~~~~li~~~~~--------~g~~~~A~~l~~~m~~~~~~~~pd--------~~t~~~li~~~~~~g~~~~A 210 (670)
.+... ....+...+.. .|++++|+.+|+++... .|+ ..++..+...+...|++++|
T Consensus 187 ~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~----~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 187 SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA----NTVDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp CSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH----CCCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 11111 22233333222 24788999999998864 444 23566777788889999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 005905 211 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 290 (670)
Q Consensus 211 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~ 290 (670)
...|+.+.+.. |+..+|..+...|...|++++|...|+++.+.... +..++..+...+...|++++|...++.+.+.
T Consensus 263 ~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 339 (537)
T 3fp2_A 263 QVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSL 339 (537)
T ss_dssp HHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 99999988864 44788888999999999999999999998877643 6778888999999999999999999998886
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhC-----CCCCC
Q 005905 291 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL-----GLCPN 365 (670)
Q Consensus 291 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~p~ 365 (670)
. +.+..++..+...|...|++++|...|+++.+.. +.+...|..+...|...|++++|++.|+++.+. .....
T Consensus 340 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 417 (537)
T 3fp2_A 340 N-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG 417 (537)
T ss_dssp C-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSST
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHH
Confidence 5 4456788889999999999999999999888765 346778888999999999999999999987652 12223
Q ss_pred HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--hHHHHHHhHHHhhhhc
Q 005905 366 TITYSILLVACERK----------DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFN 429 (670)
Q Consensus 366 ~~t~~~ll~a~~~~----------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r--~~~~a~~l~~a~~~~~ 429 (670)
...+.....++... |++++|..+|+++.+.. +.+...+..+..++.+ ++++|....+......
T Consensus 418 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 418 IGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp THHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 33455555667777 99999999999888753 2345666667666665 6777776665544444
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.80 E-value=9.2e-17 Score=174.88 Aligned_cols=369 Identities=9% Similarity=-0.010 Sum_probs=273.3
Q ss_pred CchhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC---CCCHHHHHHHHH
Q 005905 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMS 100 (670)
Q Consensus 24 ~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~y~~li~ 100 (670)
+.......-..+.+.|++++|++.|+++.+.+ |.+...+..+...+...|++++|+..|+.+. +++......++.
T Consensus 38 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 115 (514)
T 2gw1_A 38 DPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLE 115 (514)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHH
T ss_pred cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHH
Confidence 33444444556668999999999999999987 7777777778899999999999999998652 223222222322
Q ss_pred HHHcCCCHHHHHHHHHHHHH-----------------------------------cCC---------CCCHHHHHHHHHH
Q 005905 101 VCASSKDSEGAFQVLRLVQE-----------------------------------AGL---------KADCKLYTTLITT 136 (670)
Q Consensus 101 ~~~~~g~~~~A~~~~~~m~~-----------------------------------~g~---------~pd~~~~~~li~~ 136 (670)
.+........+.+.+..+.. ... +.+...+..+...
T Consensus 116 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (514)
T 2gw1_A 116 RNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLS 195 (514)
T ss_dssp HHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHH
Confidence 22221111111111110000 000 0112333333333
Q ss_pred HHh---cCCHHHHHh------c-----C----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHH
Q 005905 137 CAK---SGKVDAMFE------N-----V----------KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192 (670)
Q Consensus 137 ~~~---~g~~~~~~~------~-----~----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~ 192 (670)
+.. .|+++++.+ . . +.+..+|..+...|...|++++|..+|+++... .|+..
T Consensus 196 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----~~~~~ 271 (514)
T 2gw1_A 196 NLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL----FPRVN 271 (514)
T ss_dssp HHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH----CCCHH
T ss_pred HHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh----CccHH
Confidence 332 555554332 1 2 224567888899999999999999999999875 45577
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005905 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272 (670)
Q Consensus 193 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 272 (670)
.+..+...+...|++++|...|+.+.+.. +.+..+|..+...|...|++++|...|++..+.... +...+..+...|.
T Consensus 272 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 349 (514)
T 2gw1_A 272 SYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAY 349 (514)
T ss_dssp HHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHH
Confidence 88889999999999999999999998865 556789999999999999999999999999987654 6678888999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHh---C
Q 005905 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK-PT----VSTMNALITALCD---G 344 (670)
Q Consensus 273 ~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~---~ 344 (670)
..|++++|...++.+.+.. +.+..++..+...|.+.|++++|...|+++.+.... ++ ...|..+...|.. .
T Consensus 350 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 428 (514)
T 2gw1_A 350 RENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTV 428 (514)
T ss_dssp TTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCT
T ss_pred HcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhc
Confidence 9999999999999998764 445678899999999999999999999988754211 12 4488999999999 9
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 005905 345 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404 (670)
Q Consensus 345 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 404 (670)
|++++|...|+++.... +.+..++..+..++.+.|++++|...|+++.+.. |+....
T Consensus 429 ~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~ 485 (514)
T 2gw1_A 429 ENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA--RTMEEK 485 (514)
T ss_dssp THHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSHHHH
T ss_pred CCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc--cccHHH
Confidence 99999999999998752 3467788889999999999999999999998854 554433
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-15 Score=155.89 Aligned_cols=307 Identities=11% Similarity=0.026 Sum_probs=207.4
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC---CCCHHHHHHHHHHHH
Q 005905 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCA 103 (670)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~y~~li~~~~ 103 (670)
.....-+.+.+.|++++|+..|+++.+.. |.+...+..+...+...|++++|+..|+... +.+...|..+...+.
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 33444556678999999999999999877 6777777778888889999999999998753 446788999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005905 104 SSKDSEGAFQVLRLVQEAGLKA----DCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAE 179 (670)
Q Consensus 104 ~~g~~~~A~~~~~~m~~~g~~p----d~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 179 (670)
..|++++|...|+++.+. .| +...+..+...+. ...+..+...+...|++++|+.+|++
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~ 145 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE---------------MQRLRSQALDAFDGADYTAAITFLDK 145 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH---------------HHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999999999875 35 2333333322211 12344566788899999999999999
Q ss_pred HhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 005905 180 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259 (670)
Q Consensus 180 m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 259 (670)
+... .+.+...+..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|...|++..+....
T Consensus 146 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~- 220 (359)
T 3ieg_A 146 ILEV---CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD- 220 (359)
T ss_dssp HHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHh---CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-
Confidence 8875 23456778888889999999999999999988865 667888999999999999999999999998876433
Q ss_pred CHHHHHHH------------HHHHHhcCChHHHHHHHHHHHHCCCCccH----HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005905 260 DEVFLSAL------------IDFAGHAGKVEAAFEILQEAKNQGISVGI----ISYSSLMGACSNAKNWQKALELYEHMK 323 (670)
Q Consensus 260 ~~~t~~~l------------i~~~~~~g~~~~A~~i~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~ 323 (670)
+...+..+ ...+.+.|++++|...++.+.+.... +. ..+..+..+|.+.|++++|...|++..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 299 (359)
T 3ieg_A 221 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVL 299 (359)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 33322211 33344455555555555554443211 11 122334444445555555555555444
Q ss_pred hCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 324 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
+.. +.+..+|..+...|...|++++|.+.|++..+
T Consensus 300 ~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 300 QME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 432 12344444444455555555555555554444
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=3e-15 Score=154.39 Aligned_cols=303 Identities=11% Similarity=0.037 Sum_probs=225.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHh-------cCCCCHHHHHHHHHHHHh
Q 005905 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-------NVKPDRVVFNALITACGQ 166 (670)
Q Consensus 94 ~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~-------~~~~~~~~~~~li~~~~~ 166 (670)
.+..+...+...|++++|+..|+++++.. +.+..++..+..++...|+++++.+ ..+.+...|..+...|..
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 44444555555555555555555555442 2234455555555555555544332 122356678888888999
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCC---C-HHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 005905 167 SGAVDRAFDVLAEMNAEVHPVDP---D-HITIGAL------------MKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 230 (670)
Q Consensus 167 ~g~~~~A~~l~~~m~~~~~~~~p---d-~~t~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 230 (670)
.|++++|...|++.... .| + ...+..+ ...+...|++++|.+.|+.+.+.. +.+..++.
T Consensus 84 ~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 158 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKS----NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE 158 (359)
T ss_dssp HTCHHHHHHHHHHHHTS----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cCChHHHHHHHHHHHhc----CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 99999999999999864 45 3 3334333 477889999999999999998876 66788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHH----------
Q 005905 231 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS---------- 300 (670)
Q Consensus 231 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~---------- 300 (670)
.+...|...|++++|...++++.+... .+..++..+...+...|++++|...++...+.. +.+...+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHH
Confidence 999999999999999999999998754 378899999999999999999999999998765 33333332
Q ss_pred --HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005905 301 --SLMGACSNAKNWQKALELYEHMKSIKLKPTV----STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374 (670)
Q Consensus 301 --~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 374 (670)
.+...+.+.|++++|...|+++.+.... +. ..+..+...|...|++++|+..|++..+. .+.+..++..+..
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~ 314 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-EPDNVNALKDRAE 314 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccHHHHHHHHH
Confidence 3366789999999999999998876422 33 23556778999999999999999999885 2347788889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 005905 375 ACERKDDVEVGLMLLSQAKEDGVIPNL-VMFKCII 408 (670)
Q Consensus 375 a~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li 408 (670)
++...|++++|...|+++.+.. |+. .....+.
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~l~ 347 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQEHN--ENDQQIREGLE 347 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC--CCChHHHHHHH
Confidence 9999999999999999998754 553 3333333
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-15 Score=165.53 Aligned_cols=325 Identities=12% Similarity=0.035 Sum_probs=249.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 005905 64 HARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140 (670)
Q Consensus 64 ~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~ 140 (670)
+......+...|++++|+..|+.+. +.+..+|..+..++.+.|++++|+..|+++++.. +.+..++..+..++...
T Consensus 28 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 106 (537)
T 3fp2_A 28 LKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESL 106 (537)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHc
Confidence 3446667788899999999998763 4678899999999999999999999999999875 45788899999999999
Q ss_pred CCHHHHHh---cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC---------------------------------
Q 005905 141 GKVDAMFE---NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV--------------------------------- 184 (670)
Q Consensus 141 g~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~--------------------------------- 184 (670)
|+++++.+ .+..+....+..+..+...+...+|...++++....
T Consensus 107 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (537)
T 3fp2_A 107 GNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTS 186 (537)
T ss_dssp TCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCC
T ss_pred CCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhc
Confidence 99998755 222222233344555666666778888888875420
Q ss_pred CCCCCCHH-HHHHHHHHH--------HHcCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHhcCCHHHHHHH
Q 005905 185 HPVDPDHI-TIGALMKAC--------ANAGQVDRAREVYKMIHKYNIKGTPE-------VYTIAINCCSQTGDWEFACSV 248 (670)
Q Consensus 185 ~~~~pd~~-t~~~li~~~--------~~~g~~~~A~~~~~~m~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~l 248 (670)
....+... ....+...+ ...|++++|..+|+.+.+.. +.+.. ++..+...+...|++++|...
T Consensus 187 ~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~ 265 (537)
T 3fp2_A 187 SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVL 265 (537)
T ss_dssp CSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 00111111 222333222 22368999999999998865 33433 567777888999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 005905 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328 (670)
Q Consensus 249 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 328 (670)
|++..+.. |+...+..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++|...|+++.+.. +
T Consensus 266 ~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~ 341 (537)
T 3fp2_A 266 LQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-P 341 (537)
T ss_dssp HHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-C
Confidence 99999874 557888899999999999999999999998875 5568889999999999999999999999998765 3
Q ss_pred CCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 329 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 395 (670)
.+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|...|+++.+.
T Consensus 342 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 342 ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 367889999999999999999999999998852 445678888899999999999999999998763
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.1e-18 Score=186.86 Aligned_cols=118 Identities=17% Similarity=0.196 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 005905 296 IISYSSLMGACSNAKNWQKALELYEHMKS---IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372 (670)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 372 (670)
..+||+||++||++|++++|.++|++|.+ .|+.||++|||+||.+||+.|++++|.++|++|.+.|+.||.+||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45566666666666666666666655542 245566666666666666666666666666666666666666666666
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005905 373 LVACERKDD-VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413 (670)
Q Consensus 373 l~a~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r 413 (670)
|.++++.|+ .++|.++|++|.+.|+.||..+|+|++..+.|
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 666666555 34555666666666666666666666555443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.4e-15 Score=152.14 Aligned_cols=207 Identities=14% Similarity=0.029 Sum_probs=93.7
Q ss_pred HHHHhcC-CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 005905 162 TACGQSG-AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 240 (670)
Q Consensus 162 ~~~~~~g-~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 240 (670)
..|...| ++++|...|++..... +.+...|..+...+...|++++|.+.|+.+.+.. +.+..++..+...|...|
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE---KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC---TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHh
Confidence 3333444 4444444444444321 1123334444444444444444444444444432 222333444444444444
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--------CCccHHHHHHHHHHHHhcCCH
Q 005905 241 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG--------ISVGIISYSSLMGACSNAKNW 312 (670)
Q Consensus 241 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~--------~~~~~~~~~~li~~~~~~g~~ 312 (670)
++++|...|++..+.... +...+..+...+...|++++|...++++.+.. .+....++..+...|.+.|++
T Consensus 174 ~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 444444444444443321 33444444444444455555544444443321 022234555555555555555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 005905 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVAC 376 (670)
Q Consensus 313 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~ 376 (670)
++|...|++..+.. +.+...|..+...|...|++++|.+.|++..+. .| +...+..+..++
T Consensus 253 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 253 AEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHH
Confidence 55555555554433 224455555555555555555555555555442 23 334444444444
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.7e-18 Score=187.74 Aligned_cols=118 Identities=14% Similarity=0.139 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH---HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHH
Q 005905 226 PEVYTIAINCCSQTGDWEFACSVYDDMT---KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302 (670)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~l~~~m~---~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~l 302 (670)
..+||+||++||+.|++++|.++|++|. +.|+.||.+|||+||++||+.|++++|.++|++|.+.|+.||++|||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3567777777777777777777776664 3467777777777777777777777777777777777777777777777
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005905 303 MGACSNAKN-WQKALELYEHMKSIKLKPTVSTMNALITALCD 343 (670)
Q Consensus 303 i~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 343 (670)
|.++|+.|+ .++|.++|++|.+.|+.||.++|++++.++.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 777777776 46677777777777777777777777765544
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.4e-15 Score=150.10 Aligned_cols=286 Identities=10% Similarity=-0.019 Sum_probs=227.7
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 005905 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGA 169 (670)
Q Consensus 90 ~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~ 169 (670)
.+...+..+...+...|++++|+.+|+++.+.. |+ +...+..++..+...|+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~--------------------------~~~~~~~~~~~~~~~~~ 71 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PF--------------------------HASCLPVHIGTLVELNK 71 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------------------------CTTTHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CC--------------------------ChhhHHHHHHHHHHhhh
Confidence 344456677788888899999999999888753 21 22234445566778888
Q ss_pred HHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005905 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG-QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248 (670)
Q Consensus 170 ~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 248 (670)
+++|..+|+++.... +.+...+..+...+...| ++++|.+.|+.+.+.. +.+..+|..+...|...|++++|...
T Consensus 72 ~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 147 (330)
T 3hym_B 72 ANELFYLSHKLVDLY---PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAA 147 (330)
T ss_dssp HHHHHHHHHHHHHHC---TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC---cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHH
Confidence 999999999988752 335677888889999999 9999999999998865 55678899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--
Q 005905 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK-- 326 (670)
Q Consensus 249 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-- 326 (670)
|++..+.... +...+..+...|...|++++|...++.+.+.. +.+..++..+...|...|++++|...|++..+..
T Consensus 148 ~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 225 (330)
T 3hym_B 148 YFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKA 225 (330)
T ss_dssp HHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhh
Confidence 9999887544 45667778889999999999999999998875 5567889999999999999999999999887531
Q ss_pred ------CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 005905 327 ------LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400 (670)
Q Consensus 327 ------~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~ 400 (670)
...+..+|..+...|...|++++|+..|++..+.. +.+...+..+..++.+.|++++|...|+++.+.. +.+
T Consensus 226 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~ 303 (330)
T 3hym_B 226 IGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDD 303 (330)
T ss_dssp TSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCC
T ss_pred ccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCc
Confidence 13346789999999999999999999999988752 3456788888899999999999999999877643 224
Q ss_pred HHHHHHHHHHH
Q 005905 401 LVMFKCIIGMC 411 (670)
Q Consensus 401 ~~~~~~li~~~ 411 (670)
...+..+...+
T Consensus 304 ~~~~~~l~~~~ 314 (330)
T 3hym_B 304 TFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 55555555555
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.6e-15 Score=154.76 Aligned_cols=307 Identities=10% Similarity=0.014 Sum_probs=168.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHH-HhhhCC---C--C--CHHHHHHHHHHHHcCCCHHH
Q 005905 39 GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFR-FFKLVP---N--P--TLSTFNMLMSVCASSKDSEG 110 (670)
Q Consensus 39 g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~---~--~--~~~~y~~li~~~~~~g~~~~ 110 (670)
..++.+...++.+.+.+ |. .+...+++++|+. .|+... + | +...+..+...+...|++++
T Consensus 15 ~~~~~~~~~~~~~~~~~--~~----------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 82 (368)
T 1fch_A 15 DFWDKLQAELEEMAKRD--AE----------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPN 82 (368)
T ss_dssp -------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHHHHHcCC--ch----------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHH
Confidence 44555556666665554 21 1122467888887 776432 1 1 34567788889999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC
Q 005905 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 190 (670)
Q Consensus 111 A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd 190 (670)
|+..|+++++.. +.+..++. .+...|.+.|++++|+..|+++.... +.+
T Consensus 83 A~~~~~~al~~~-p~~~~~~~---------------------------~l~~~~~~~g~~~~A~~~~~~al~~~---~~~ 131 (368)
T 1fch_A 83 AVLLFEAAVQQD-PKHMEAWQ---------------------------YLGTTQAENEQELLAISALRRCLELK---PDN 131 (368)
T ss_dssp HHHHHHHHHHSC-TTCHHHHH---------------------------HHHHHHHHTTCHHHHHHHHHHHHHHC---TTC
T ss_pred HHHHHHHHHHhC-CCCHHHHH---------------------------HHHHHHHHCcCHHHHHHHHHHHHhcC---CCC
Confidence 999999998863 22334444 44445555555555666665555431 224
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH---------------HHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI---------------AINCCSQTGDWEFACSVYDDMTKK 255 (670)
Q Consensus 191 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~---------------li~~~~~~g~~~~A~~l~~~m~~~ 255 (670)
..++..+...+...|++++|.+.|+.+.+.. +.+...+.. .+..+...|++++|...|+++.+.
T Consensus 132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 210 (368)
T 1fch_A 132 QTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL 210 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 4555555556666666666666666555543 111111111 122333667777777777776665
Q ss_pred CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 005905 256 GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334 (670)
Q Consensus 256 g~~p-~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 334 (670)
.... +..++..+...|...|++++|...++++.+.. +.+..++..+...|.+.|++++|...|+++.+.. +.+..+|
T Consensus 211 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~ 288 (368)
T 1fch_A 211 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSR 288 (368)
T ss_dssp STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHH
Confidence 3321 45666667777777777777777777766653 3445667777777777777777777777766543 2356667
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCC---C-------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005905 335 NALITALCDGDQLPKTMEVLSDMKSLGL---C-------PNTITYSILLVACERKDDVEVGLMLLSQ 391 (670)
Q Consensus 335 ~~li~~~~~~g~~~~A~~l~~~m~~~g~---~-------p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 391 (670)
..+...|.+.|++++|...|++..+... . ....+|..+..++...|+.++|..++.+
T Consensus 289 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 289 YNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 7777777777777777777777655210 0 0146677777777777777777776653
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.9e-15 Score=155.56 Aligned_cols=268 Identities=13% Similarity=0.016 Sum_probs=198.2
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCH
Q 005905 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAV 170 (670)
Q Consensus 91 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 170 (670)
+...|..+...+.+.|++++|+..|+++++.. |+ +..+|..+...|.+.|++
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~--------------------------~~~~~~~lg~~~~~~g~~ 115 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PG--------------------------DAEAWQFLGITQAENENE 115 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TT--------------------------CHHHHHHHHHHHHHTTCH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cC--------------------------CHHHHHHHHHHHHHCCCH
Confidence 45568888899999999999999999988753 22 344567777778888888
Q ss_pred HHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---------CCHHHHHHHHHHHHhcCC
Q 005905 171 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK---------GTPEVYTIAINCCSQTGD 241 (670)
Q Consensus 171 ~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---------~~~~~~~~li~~~~~~g~ 241 (670)
++|+..|+++.... +.+..++..+...|...|++++|...|+++.+.... ....++..+...|.+.|+
T Consensus 116 ~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 192 (365)
T 4eqf_A 116 QAAIVALQRCLELQ---PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSV 192 (365)
T ss_dssp HHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHH
T ss_pred HHHHHHHHHHHhcC---CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhh
Confidence 99999999887742 334778888888999999999999999888765310 012234455778888899
Q ss_pred HHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005905 242 WEFACSVYDDMTKKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320 (670)
Q Consensus 242 ~~~A~~l~~~m~~~g~~-p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 320 (670)
+++|..+|+++.+.... ++..++..+...|...|++++|.+.++++.+.. +.+..+++.+..+|.+.|++++|...|+
T Consensus 193 ~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 271 (365)
T 4eqf_A 193 LEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYT 271 (365)
T ss_dssp HHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999988876533 257788888888888899999999998888765 5567888888889999999999999998
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCC---CCC--------CHHHHHHHHHHHHhcCCHHHHHHHH
Q 005905 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG---LCP--------NTITYSILLVACERKDDVEVGLMLL 389 (670)
Q Consensus 321 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p--------~~~t~~~ll~a~~~~g~~~~a~~~~ 389 (670)
++.+.. +.+..+|..+..+|...|++++|...|+++.+.. ..| +...|..+..++...|+.+.+..+.
T Consensus 272 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 350 (365)
T 4eqf_A 272 RALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAAN 350 (365)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 887764 3357888888888889999999999988877621 011 2567778888888888888877766
Q ss_pred HH
Q 005905 390 SQ 391 (670)
Q Consensus 390 ~~ 391 (670)
.+
T Consensus 351 ~~ 352 (365)
T 4eqf_A 351 LG 352 (365)
T ss_dssp TT
T ss_pred Hh
Confidence 43
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.8e-15 Score=155.61 Aligned_cols=261 Identities=10% Similarity=-0.024 Sum_probs=212.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005905 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 233 (670)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 233 (670)
...|..+...|.+.|++++|+..|+++.... +.+..++..+..++...|++++|...|+++.+.. +.+..++..+.
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~ 139 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD---PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALA 139 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 4567778889999999999999999999852 4467788899999999999999999999999876 66889999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH---------------HHHHHHhcCChHHHHHHHHHHHHCCCCc-cHH
Q 005905 234 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA---------------LIDFAGHAGKVEAAFEILQEAKNQGISV-GII 297 (670)
Q Consensus 234 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~---------------li~~~~~~g~~~~A~~i~~~m~~~~~~~-~~~ 297 (670)
..|...|++++|...|+++.+..... ...+.. .+..+...|++++|...++.+.+..... +..
T Consensus 140 ~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 218 (368)
T 1fch_A 140 VSFTNESLQRQACEILRDWLRYTPAY-AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPD 218 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTT-GGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHH
Confidence 99999999999999999998875432 222211 2344448999999999999998875221 688
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005905 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377 (670)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 377 (670)
++..+...|.+.|++++|...|+++.+.. +.+..+|..+...|...|++++|+..|+++.+.. +.+...+..+..+|.
T Consensus 219 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 296 (368)
T 1fch_A 219 VQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCI 296 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 99999999999999999999999988764 3468899999999999999999999999998742 346788899999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCC---C-------CHHHHHHHHHHHHh--hHHHHHHh
Q 005905 378 RKDDVEVGLMLLSQAKEDGVI---P-------NLVMFKCIIGMCSR--RYEKARTL 421 (670)
Q Consensus 378 ~~g~~~~a~~~~~~m~~~g~~---p-------~~~~~~~li~~~~r--~~~~a~~l 421 (670)
+.|++++|...|+++.+..-. | ....|..+..++.+ ++++|..+
T Consensus 297 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 297 NLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 999999999999998864211 1 15677777777654 44444443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.7e-12 Score=136.45 Aligned_cols=332 Identities=11% Similarity=0.008 Sum_probs=265.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhh----hhhHHHHHHHhhhCC-CCCHHHHHHHHHHHHc----CCCH
Q 005905 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS----QKAIKEAFRFFKLVP-NPTLSTFNMLMSVCAS----SKDS 108 (670)
Q Consensus 38 ~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~-~~~~~~y~~li~~~~~----~g~~ 108 (670)
.+++++|++.|++..+.|. ......+...+.. .++.++|+++|++.. ..+...+..|...|.. .+++
T Consensus 56 ~~~~~~A~~~~~~a~~~~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~ 131 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGY----TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDK 131 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CcCHHHHHHHHHHHHHCCC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCH
Confidence 6899999999999988762 2233336666666 788999999998754 4467788888888888 7899
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHhc-----CCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 005905 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAK----SGKVDAMFEN-----VKPDRVVFNALITACGQ----SGAVDRAFD 175 (670)
Q Consensus 109 ~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~----~g~~~~~~~~-----~~~~~~~~~~li~~~~~----~g~~~~A~~ 175 (670)
++|+..|++..+.| +...+..|..+|.. .++.+++++- -..+...+..|...|.+ .++.++|++
T Consensus 132 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 208 (490)
T 2xm6_A 132 AESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQ 208 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHH
Confidence 99999999988875 56777888888877 6777776541 12477888888888888 899999999
Q ss_pred HHHHHhhCCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 005905 176 VLAEMNAEVHPVDPDHITIGALMKACAN----AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ----TGDWEFACS 247 (670)
Q Consensus 176 l~~~m~~~~~~~~pd~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~ 247 (670)
.|++.... .+...+..+...|.. .+++++|...|+...+.+ +...+..+...|.. .+++++|..
T Consensus 209 ~~~~a~~~-----~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~ 280 (490)
T 2xm6_A 209 WYRKSATS-----GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALE 280 (490)
T ss_dssp HHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHH
T ss_pred HHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHH
Confidence 99998774 255677777777776 789999999999888765 45677777777877 889999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC---CHHHHHHHH
Q 005905 248 VYDDMTKKGVIPDEVFLSALIDFAGHA-----GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK---NWQKALELY 319 (670)
Q Consensus 248 l~~~m~~~g~~p~~~t~~~li~~~~~~-----g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~ 319 (670)
.|++..+.| +...+..+...|... ++.++|...++...+.+ +...+..+..+|...| ++++|.+.|
T Consensus 281 ~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~ 354 (490)
T 2xm6_A 281 WYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWF 354 (490)
T ss_dssp HHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred HHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHH
Confidence 999988775 455677777778777 89999999999998876 4567777888888766 789999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh----CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q 005905 320 EHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER----KDDVEVGLMLLSQ 391 (670)
Q Consensus 320 ~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~ 391 (670)
++..+. .+...+..|...|.. .+++++|++.|++..+.| +...+..+-..|.+ .++.++|..+|++
T Consensus 355 ~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 428 (490)
T 2xm6_A 355 RKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDT 428 (490)
T ss_dssp HHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 998875 367888888888888 789999999999988865 46677777777777 7999999999999
Q ss_pred HHHCC
Q 005905 392 AKEDG 396 (670)
Q Consensus 392 m~~~g 396 (670)
..+.+
T Consensus 429 A~~~~ 433 (490)
T 2xm6_A 429 ASTND 433 (490)
T ss_dssp HHHHH
T ss_pred HHHCC
Confidence 88876
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.66 E-value=2e-15 Score=155.27 Aligned_cols=287 Identities=14% Similarity=0.183 Sum_probs=136.6
Q ss_pred HHHHHH-hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCCHH
Q 005905 31 SYNRLI-RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSE 109 (670)
Q Consensus 31 ~~~~l~-~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~ 109 (670)
..+.|+ +.|++++|.+.++++.... +-..++.++.+.|++++|++.|.+. +|..+|..++.++...|+++
T Consensus 8 a~~~ll~~~~~ld~A~~fae~~~~~~-------vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~E 78 (449)
T 1b89_A 8 AVQVLIEHIGNLDRAYEFAERCNEPA-------VWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWE 78 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHccCHHHHHHHHHhCCChH-------HHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHH
Confidence 345555 6889999999999994322 3345888899999999999999764 56679999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 005905 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENV-KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188 (670)
Q Consensus 110 ~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~ 188 (670)
+|+..++...+. .+++.+.+.|+.+|.++|+++++.+-+ .|+..+|+.+...|...|++++|..+|..+
T Consensus 79 eAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 79 ELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp --------------------------------CHHHHTTTTTCC----------------CTTTHHHHHHHT--------
T ss_pred HHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence 999977766663 466888999999999999999976643 578889999999999999999999999976
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005905 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268 (670)
Q Consensus 189 pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li 268 (670)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ..+..-...++
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv 214 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELI 214 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHH
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHH
Confidence 26889999999999999999999988 26799999999999999999996655542 23444466799
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHH
Q 005905 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA--KNWQKALELYEHMKSIKLKP------TVSTMNALITA 340 (670)
Q Consensus 269 ~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~p------~~~~~~~li~~ 340 (670)
..|.+.|.+++|..+++...... +-....|+-|.-.|++- +++.+..+.|.. ..+++| +...|..++..
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~l 291 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFL 291 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988765 55677888887778765 456666666653 122222 45579999999
Q ss_pred HHhCCChhHHHHH
Q 005905 341 LCDGDQLPKTMEV 353 (670)
Q Consensus 341 ~~~~g~~~~A~~l 353 (670)
|...++++.|...
T Consensus 292 y~~~~e~d~A~~t 304 (449)
T 1b89_A 292 YDKYEEYDNAIIT 304 (449)
T ss_dssp HHHTTCHHHHHHH
T ss_pred HHhhchHHHHHHH
Confidence 9999999998874
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.65 E-value=9.9e-15 Score=151.53 Aligned_cols=237 Identities=11% Similarity=0.011 Sum_probs=196.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005905 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 232 (670)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 232 (670)
+...|..+...+.+.|++++|+.+|+++.... +.+..++..+...+...|++++|...|+++.+.. +.+..+|..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 139 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD---PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMAL 139 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 45568889999999999999999999998752 4467889999999999999999999999999876 5678999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCC---------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-ccHHHHHHH
Q 005905 233 INCCSQTGDWEFACSVYDDMTKKGVI---------PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS-VGIISYSSL 302 (670)
Q Consensus 233 i~~~~~~g~~~~A~~l~~~m~~~g~~---------p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~-~~~~~~~~l 302 (670)
..+|...|++++|...|+++.+.... .....+..+...+...|++++|..+++++.+.... .+..++..+
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 99999999999999999999875321 01223445678899999999999999999887522 268899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 005905 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382 (670)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 382 (670)
...|...|++++|...|++..+.. +.+..+|+.+..+|...|++++|+..|++..+.. +.+..++..+..+|.+.|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 999999999999999999998765 3478899999999999999999999999998852 33578899999999999999
Q ss_pred HHHHHHHHHHHHC
Q 005905 383 EVGLMLLSQAKED 395 (670)
Q Consensus 383 ~~a~~~~~~m~~~ 395 (670)
++|...|+++.+.
T Consensus 298 ~~A~~~~~~al~~ 310 (365)
T 4eqf_A 298 REAVSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998864
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2.7e-14 Score=145.18 Aligned_cols=265 Identities=11% Similarity=0.022 Sum_probs=190.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH
Q 005905 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDR 172 (670)
Q Consensus 93 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 172 (670)
..|..+...+...|++++|..+|+++.+.. |+ +..+|..+...|.+.|++++
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~--------------------------~~~~~~~l~~~~~~~~~~~~ 73 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA--PE--------------------------REEAWRSLGLTQAENEKDGL 73 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------------------------CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CC--------------------------CHHHHHHHHHHHHHcCCHHH
Confidence 345667778888899999999998887753 22 33445556666777777788
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH--------------HH-HHH
Q 005905 173 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA--------------IN-CCS 237 (670)
Q Consensus 173 A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l--------------i~-~~~ 237 (670)
|...|+++.... +.+..++..+...+...|++++|.+.|+.+.+.. +.+...+..+ .. .+.
T Consensus 74 A~~~~~~a~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (327)
T 3cv0_A 74 AIIALNHARMLD---PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFA 149 (327)
T ss_dssp HHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTT
T ss_pred HHHHHHHHHhcC---cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHH
Confidence 888888777641 3356677777777888888888888888777654 2222233322 22 366
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 005905 238 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317 (670)
Q Consensus 238 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 317 (670)
..|++++|...++++.+.... +...+..+...|...|++++|...++.+.+.. +.+..++..+...|...|++++|..
T Consensus 150 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 227 (327)
T 3cv0_A 150 APNEYRECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALD 227 (327)
T ss_dssp SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 778888888888888776543 67778888888888888888888888887764 4557778888888888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHhcCCHHHHH
Q 005905 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-----------NTITYSILLVACERKDDVEVGL 386 (670)
Q Consensus 318 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----------~~~t~~~ll~a~~~~g~~~~a~ 386 (670)
.|+++.+.. +.+..+|..+...|...|++++|.+.|++..+..... +..++..+..++.+.|+.++|.
T Consensus 228 ~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 306 (327)
T 3cv0_A 228 AYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVE 306 (327)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHH
Confidence 888877654 3367788888888888888888888888877632111 3667777888888888888888
Q ss_pred HHHHHH
Q 005905 387 MLLSQA 392 (670)
Q Consensus 387 ~~~~~m 392 (670)
.++++.
T Consensus 307 ~~~~~~ 312 (327)
T 3cv0_A 307 LTYAQN 312 (327)
T ss_dssp HHTTCC
T ss_pred HHHHHH
Confidence 877543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.6e-14 Score=140.83 Aligned_cols=248 Identities=13% Similarity=0.113 Sum_probs=160.0
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHhcC----CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005905 104 SSKDSEGAFQVLRLVQEAGLKADC--KLYTTLITTCAKSGKVDAMFENV----KPDRVVFNALITACGQSGAVDRAFDVL 177 (670)
Q Consensus 104 ~~g~~~~A~~~~~~m~~~g~~pd~--~~~~~li~~~~~~g~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~ 177 (670)
..|++..|+..++.... ..|+. .....+..+|...|+++.+...+ .|+..++..+...|...++.++|++.+
T Consensus 11 ~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l 88 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAEL 88 (291)
T ss_dssp HTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 34555555554443322 12222 12233444455555554444322 234556666777777888888888888
Q ss_pred HHHhhCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005905 178 AEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256 (670)
Q Consensus 178 ~~m~~~~~~~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 256 (670)
+++... +..|+ ...+..+...+...|++++|.+.++. +.+..++..+...|.+.|++++|.+.|+++.+..
T Consensus 89 ~~ll~~--~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 89 DREMSR--SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHS--CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhc--ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 887764 23354 44455566778888888888888866 4567788888888888888888888888887764
Q ss_pred CCCCHHHH---HHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 005905 257 VIPDEVFL---SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333 (670)
Q Consensus 257 ~~p~~~t~---~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 333 (670)
|+.... ...+..+...|++++|..+|+++.+.. +.+..+++.+..+|.+.|++++|...|++..+.. +-+..+
T Consensus 161 --p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~ 236 (291)
T 3mkr_A 161 --EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPET 236 (291)
T ss_dssp --TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred --cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 333211 122333444577888888888887763 5677778888888888888888888888777654 336777
Q ss_pred HHHHHHHHHhCCChhH-HHHHHHHHHhCCCCCCHH
Q 005905 334 MNALITALCDGDQLPK-TMEVLSDMKSLGLCPNTI 367 (670)
Q Consensus 334 ~~~li~~~~~~g~~~~-A~~l~~~m~~~g~~p~~~ 367 (670)
+..++..+...|+.++ +.++++++.+. .|+..
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~ 269 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHP 269 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCCh
Confidence 7777777777887765 46777777763 45543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-13 Score=137.66 Aligned_cols=252 Identities=15% Similarity=0.158 Sum_probs=186.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchH-HHHHHHHHHHhhhhhHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCCHH
Q 005905 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDK-VYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSE 109 (670)
Q Consensus 31 ~~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~ 109 (670)
........|++..|+..++...... |.+. .....+.+.+...|+++.|+..++...+|+..++..+...+...++.+
T Consensus 5 ~~~~~~~~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 5 DVKNAFYIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHH
Confidence 3445567899999999998765443 4442 355567788899999999999998776778888999999999999999
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHhcC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 005905 110 GAFQVLRLVQEAGLKA-DCKLYTTLITTCAKSGKVDAMFENV--KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186 (670)
Q Consensus 110 ~A~~~~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 186 (670)
+|++.++++...+..| +...+..+..++...|+++++.+.+ ..+...+..++..|.+.|++++|.+.|+++.+.
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--- 159 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--- 159 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTTCCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---
Confidence 9999999999877555 4555666667888888888765521 456777778888888888888888888888764
Q ss_pred CCCCHHHHHHHH----HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 005905 187 VDPDHITIGALM----KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262 (670)
Q Consensus 187 ~~pd~~t~~~li----~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 262 (670)
.|+.. ...+. ..+...|++++|..+|+++.+.. +.+..+|+.+..++.+.|++++|...|++..+.... +..
T Consensus 160 -~p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-~~~ 235 (291)
T 3mkr_A 160 -DEDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-HPE 235 (291)
T ss_dssp -CTTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHH
T ss_pred -CcCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHH
Confidence 45532 22222 23333477888888888877764 667777888888888888888888888887776543 666
Q ss_pred HHHHHHHHHHhcCChHH-HHHHHHHHHHCC
Q 005905 263 FLSALIDFAGHAGKVEA-AFEILQEAKNQG 291 (670)
Q Consensus 263 t~~~li~~~~~~g~~~~-A~~i~~~m~~~~ 291 (670)
++..++..+...|+.++ +.++++++.+..
T Consensus 236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 236 TLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 77777777777777765 567777776654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.4e-13 Score=139.88 Aligned_cols=236 Identities=10% Similarity=-0.042 Sum_probs=197.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005905 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 232 (670)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 232 (670)
+...|..+...+...|++++|..+|+++.... +.+...+..+...+...|++++|.+.|+.+.+.. +.+..++..+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 95 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA---PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAAL 95 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHH
Confidence 33456677888999999999999999998752 3467788889999999999999999999998875 6678899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH--------------HH-HHHhcCChHHHHHHHHHHHHCCCCccHH
Q 005905 233 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL--------------ID-FAGHAGKVEAAFEILQEAKNQGISVGII 297 (670)
Q Consensus 233 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l--------------i~-~~~~~g~~~~A~~i~~~m~~~~~~~~~~ 297 (670)
...|...|++++|...|+++.+.... +...+..+ .. .+...|++++|..+++.+.+.. +.+..
T Consensus 96 a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 173 (327)
T 3cv0_A 96 AVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQ 173 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHH
Confidence 99999999999999999999876433 22222222 22 3677889999999999998875 45788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005905 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377 (670)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 377 (670)
++..+...|.+.|++++|...|+++.+.. +.+..+|..+...|...|++++|+..|+++.+.. +.+..++..+..++.
T Consensus 174 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 251 (327)
T 3cv0_A 174 LHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYS 251 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 99999999999999999999999988765 3468899999999999999999999999988752 346788889999999
Q ss_pred hcCCHHHHHHHHHHHHHCC
Q 005905 378 RKDDVEVGLMLLSQAKEDG 396 (670)
Q Consensus 378 ~~g~~~~a~~~~~~m~~~g 396 (670)
..|++++|.+.|+++.+..
T Consensus 252 ~~g~~~~A~~~~~~a~~~~ 270 (327)
T 3cv0_A 252 NMSQYDLAAKQLVRAIYMQ 270 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC
Confidence 9999999999999988743
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.62 E-value=6.5e-11 Score=128.05 Aligned_cols=376 Identities=11% Similarity=-0.003 Sum_probs=283.2
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhh----hhhHHHHHHHhhhCC-CCCHHHHHHHHHHHHc----CCCHHHHHHH
Q 005905 44 CIDLLEDMERKGLLDMDKVYHARFFNVCKS----QKAIKEAFRFFKLVP-NPTLSTFNMLMSVCAS----SKDSEGAFQV 114 (670)
Q Consensus 44 A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~-~~~~~~y~~li~~~~~----~g~~~~A~~~ 114 (670)
+++.++...+.| +......+...+.. .+++++|+.+|+... ..+...+..|...|.. .+++++|...
T Consensus 26 ~~~~~~~~a~~g----~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 26 NLEQLKQKAESG----EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp CHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 455666665555 22233334555555 688999999998653 4577888889999988 8999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHhc-----CCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHh
Q 005905 115 LRLVQEAGLKADCKLYTTLITTCAK----SGKVDAMFEN-----VKPDRVVFNALITACGQ----SGAVDRAFDVLAEMN 181 (670)
Q Consensus 115 ~~~m~~~g~~pd~~~~~~li~~~~~----~g~~~~~~~~-----~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~ 181 (670)
|++..+.| +...+..|..+|.. .++.+++++- -.-+...+..|...|.. .+++++|++.|++..
T Consensus 102 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~ 178 (490)
T 2xm6_A 102 YKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAA 178 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 99998875 66777788888888 6788776541 12467788888888887 789999999999988
Q ss_pred hCCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 005905 182 AEVHPVDPDHITIGALMKACAN----AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ----TGDWEFACSVYDDMT 253 (670)
Q Consensus 182 ~~~~~~~pd~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~ 253 (670)
+. .+...+..+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|..+|++..
T Consensus 179 ~~-----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~ 250 (490)
T 2xm6_A 179 EQ-----GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSA 250 (490)
T ss_dssp HT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HC-----CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 74 256788888888888 899999999999988865 46788888888886 789999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHh
Q 005905 254 KKGVIPDEVFLSALIDFAGH----AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA-----KNWQKALELYEHMKS 324 (670)
Q Consensus 254 ~~g~~p~~~t~~~li~~~~~----~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~ 324 (670)
+.| +...+..+...|.. .++.++|...|+...+.| +...+..|..+|... +++++|...|++..+
T Consensus 251 ~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~ 324 (490)
T 2xm6_A 251 EQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE 324 (490)
T ss_dssp TTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh
Confidence 875 45566677777777 899999999999998775 456777888888887 899999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhCC---ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCC
Q 005905 325 IKLKPTVSTMNALITALCDGD---QLPKTMEVLSDMKSLGLCPNTITYSILLVACER----KDDVEVGLMLLSQAKEDGV 397 (670)
Q Consensus 325 ~~~~p~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~g~ 397 (670)
.+ +...+..|...|...| +.++|++.|++..+.| +...+..+-..|.. .++.++|..+|++..+.|
T Consensus 325 ~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~- 397 (490)
T 2xm6_A 325 QG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG- 397 (490)
T ss_dssp TT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred cC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-
Confidence 64 5677888888888877 7899999999998864 56777777788887 899999999999998876
Q ss_pred CCCHHHHHHHHHHHHhhHHHHHHhHHHhhhhcCCCccchhhhHHHHHHHHHHHHHcCCC-CcHHHHHHHHhh
Q 005905 398 IPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTI-PTVEVVSKVLGC 468 (670)
Q Consensus 398 ~p~~~~~~~li~~~~r~~~~a~~l~~a~~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~-P~~~~~~~ll~~ 468 (670)
+...+..|-.+|.+ +. ....-..+|...|++..+.+.. |+.......++.
T Consensus 398 --~~~a~~~Lg~~y~~-----------------g~--g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~ 448 (490)
T 2xm6_A 398 --LSAAQVQLGEIYYY-----------------GL--GVERDYVQAWAWFDTASTNDMNLFGTENRNITEKK 448 (490)
T ss_dssp --CHHHHHHHHHHHHH-----------------TS--SSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTT
T ss_pred --CHHHHHHHHHHHHc-----------------CC--CCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHh
Confidence 34444444444321 00 0012234677777777776544 434433333433
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.1e-15 Score=153.91 Aligned_cols=276 Identities=11% Similarity=0.156 Sum_probs=127.0
Q ss_pred hhhhhHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhc--
Q 005905 72 KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN-- 149 (670)
Q Consensus 72 ~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~-- 149 (670)
.+.|++++|.+++++++.|+ +|..|+.++.+.|++++|++.|.+ .+|..+|..++..+...|+++++..-
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 45678999999999997664 899999999999999999999965 25777999999999999998876551
Q ss_pred ----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 005905 150 ----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 225 (670)
Q Consensus 150 ----~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 225 (670)
..++..+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|...|..+
T Consensus 86 ~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 86 MARKKARESYVETELIFALAKTNRLAELEEFIN---------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp -----------------------CHHHHTTTTT---------CC----------------CTTTHHHHHHHT--------
T ss_pred HHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc---------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence 23456788999999999999999887773 366679999999999999999999999876
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHH
Q 005905 226 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305 (670)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~ 305 (670)
..|..+++++.+.|++++|.+.+.++ .+..+|..++.+|...|+++.|...... +...+.-...++..
T Consensus 149 -~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~ 216 (449)
T 1b89_A 149 -SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINY 216 (449)
T ss_dssp -TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHH
Confidence 36889999999999999999999988 2778999999999999999999554443 22333445578899
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC--CChhHHHHHHHHHHhCCCCC------CHHHHHHHHHHHH
Q 005905 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG--DQLPKTMEVLSDMKSLGLCP------NTITYSILLVACE 377 (670)
Q Consensus 306 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~l~~~m~~~g~~p------~~~t~~~ll~a~~ 377 (670)
|.+.|.+++|..+++...... +.....|+-|--+|++- ++..+.+++|.. +-.++| +...|.-+...|.
T Consensus 217 Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~ 293 (449)
T 1b89_A 217 YQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYD 293 (449)
T ss_dssp HHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887665 55778888888888865 344455554432 112222 3445666666777
Q ss_pred hcCCHHHHHH
Q 005905 378 RKDDVEVGLM 387 (670)
Q Consensus 378 ~~g~~~~a~~ 387 (670)
+.++++.|..
T Consensus 294 ~~~e~d~A~~ 303 (449)
T 1b89_A 294 KYEEYDNAII 303 (449)
T ss_dssp HTTCHHHHHH
T ss_pred hhchHHHHHH
Confidence 7777777765
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-11 Score=134.85 Aligned_cols=380 Identities=9% Similarity=0.074 Sum_probs=266.4
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC--CCCHHHHHHHHHHH-HcCCCHHHHH
Q 005905 36 IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMSVC-ASSKDSEGAF 112 (670)
Q Consensus 36 ~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~y~~li~~~-~~~g~~~~A~ 112 (670)
.+.|++++|..+|+++.+.. |.+..+....+..+.+.|++++|..+|++.. .|+...|...+... ...|+++.|.
T Consensus 23 ~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~ 100 (530)
T 2ooe_A 23 AQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYK 100 (530)
T ss_dssp HHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHH
T ss_pred HHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHH
Confidence 46899999999999999876 7777777778888889999999999999864 47888888777533 4567777766
Q ss_pred H----HHHHHHHc-CCCC-CHHHHHHHHHHHHh---------cCCHHHHHh---c-C-CCC---HHHHHHHHHHH-----
Q 005905 113 Q----VLRLVQEA-GLKA-DCKLYTTLITTCAK---------SGKVDAMFE---N-V-KPD---RVVFNALITAC----- 164 (670)
Q Consensus 113 ~----~~~~m~~~-g~~p-d~~~~~~li~~~~~---------~g~~~~~~~---~-~-~~~---~~~~~~li~~~----- 164 (670)
+ +|+..+.. |..| +...|...+....+ .|+++.+.. . + .|+ ...|.......
T Consensus 101 ~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~ 180 (530)
T 2ooe_A 101 EKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI 180 (530)
T ss_dssp HHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch
Confidence 5 77776653 5444 45677777776554 455554332 1 1 232 23444322211
Q ss_pred --------HhcCCHHHHHHHHHHH------hhCCC-CCCCC--------HHHHHHHHHHHHHc----CCH----HHHHHH
Q 005905 165 --------GQSGAVDRAFDVLAEM------NAEVH-PVDPD--------HITIGALMKACANA----GQV----DRAREV 213 (670)
Q Consensus 165 --------~~~g~~~~A~~l~~~m------~~~~~-~~~pd--------~~t~~~li~~~~~~----g~~----~~A~~~ 213 (670)
.+.+++..|..++..+ ..... .+.|+ ...|...+...... ++. +.+..+
T Consensus 181 ~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~ 260 (530)
T 2ooe_A 181 HLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFA 260 (530)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHH
Confidence 1345677787777652 22110 13444 25676666544332 233 488899
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 005905 214 YKMIHKYNIKGTPEVYTIAINCCSQ-------TGDWE-------FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 279 (670)
Q Consensus 214 ~~~m~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 279 (670)
|++..... +.+...|......+.+ .|+++ +|..+|++..+.-.+-+...|..++..+.+.|++++
T Consensus 261 y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~ 339 (530)
T 2ooe_A 261 YEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEK 339 (530)
T ss_dssp HHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHH
Confidence 99988864 6678899998888876 79987 899999999863223367889999999999999999
Q ss_pred HHHHHHHHHHCCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhCCChhHHHHHHHHH
Q 005905 280 AFEILQEAKNQGISVG-IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT-ALCDGDQLPKTMEVLSDM 357 (670)
Q Consensus 280 A~~i~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~-~~~~~g~~~~A~~l~~~m 357 (670)
|..+|+.+.+.. +.+ ..+|..++..+.+.|++++|.++|++..+... .+...|..... .+...|+.++|..+|++.
T Consensus 340 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~a 417 (530)
T 2ooe_A 340 VHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELG 417 (530)
T ss_dssp HHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 999999999864 223 35899999999999999999999999987532 23333332222 234689999999999998
Q ss_pred HhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHh--hHHHHHHhH
Q 005905 358 KSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKEDG-VIPN--LVMFKCIIGMCSR--RYEKARTLN 422 (670)
Q Consensus 358 ~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g-~~p~--~~~~~~li~~~~r--~~~~a~~l~ 422 (670)
.+. .| +...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+....+ ..+.+..+.
T Consensus 418 l~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~ 486 (530)
T 2ooe_A 418 LKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 486 (530)
T ss_dssp HHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 874 34 57888888999999999999999999998863 3333 4456555554433 345554443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-11 Score=139.44 Aligned_cols=342 Identities=15% Similarity=0.144 Sum_probs=254.2
Q ss_pred CCCchhhHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCchHHHHHHHHHHHhhhhhHHHHHHHhhhCCCCCHHHHHHHHH
Q 005905 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGL-LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMS 100 (670)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~ 100 (670)
+.++..--.+...++..|.+.+|+++++++.-.+- +..+..+..+++....+. +.....++......-+ ..-+..
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~ 1057 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIAN 1057 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHH
Confidence 44555666667778899999999999999984431 124445554444444333 4444455544443222 445778
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcC--CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005905 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENV--KPDRVVFNALITACGQSGAVDRAFDVLA 178 (670)
Q Consensus 101 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~ 178 (670)
.|...|.+++|..+|++.. -.....+.++. ..++++++.+-. --+..+|..+..++...|++++|++.|.
T Consensus 1058 Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 8899999999999999852 12222333433 667788766522 2457889999999999999999999996
Q ss_pred HHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 005905 179 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258 (670)
Q Consensus 179 ~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 258 (670)
+. -|...|..++.+|.+.|++++|.+.|....+.. +++...+.++.+|++.+++++...+. + .
T Consensus 1130 KA--------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~ 1192 (1630)
T 1xi4_A 1130 KA--------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---G 1192 (1630)
T ss_pred hc--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---C
Confidence 53 356788889999999999999999999887754 33344556999999999988644332 2 3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005905 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 338 (670)
Q Consensus 259 p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 338 (670)
++...|..+...|...|++++|..+|... ..|..+...|.+.|++++|.+.+++.. +..+|..+-
T Consensus 1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~ 1257 (1630)
T 1xi4_A 1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVC 1257 (1630)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHH
Confidence 46667778999999999999999999984 489999999999999999999999763 778999999
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005905 339 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413 (670)
Q Consensus 339 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r 413 (670)
.+|...|++..|...... +..+...+..++..|.+.|.+++|+.+++...... +-....|+-+-.++++
T Consensus 1258 ~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1258 FACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHh
Confidence 999999999999887654 34456677788999999999999999997766543 2334455555556554
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.55 E-value=7.9e-11 Score=128.75 Aligned_cols=393 Identities=11% Similarity=0.086 Sum_probs=270.6
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC
Q 005905 48 LEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124 (670)
Q Consensus 48 ~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 124 (670)
|++..+.. |.+......++.. .+.|++++|..+|+++. +.+...|...+..+.+.|++++|..+|++++.. .
T Consensus 2 le~al~~~--P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~ 76 (530)
T 2ooe_A 2 AEKKLEEN--PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--V 76 (530)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--C
T ss_pred hhhHhhhC--CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--C
Confidence 55566665 6666655556664 56789999999998763 456778999999999999999999999999986 3
Q ss_pred CCHHHHHHHHHHH-HhcCCHHH-------HHh------cCC-CCHHHHHHHHHHHHh---------cCCHHHHHHHHHHH
Q 005905 125 ADCKLYTTLITTC-AKSGKVDA-------MFE------NVK-PDRVVFNALITACGQ---------SGAVDRAFDVLAEM 180 (670)
Q Consensus 125 pd~~~~~~li~~~-~~~g~~~~-------~~~------~~~-~~~~~~~~li~~~~~---------~g~~~~A~~l~~~m 180 (670)
|+...|...+... ...|+.+. +++ +.. ++...|...+..... .|++++|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 6877777766533 33454332 333 223 467788888876654 78999999999999
Q ss_pred hhCCCCCCCCHHHHHHHHHHH-------------HHcCCHHHHHHHHHHHH------HcC---CCCC--------HHHHH
Q 005905 181 NAEVHPVDPDHITIGALMKAC-------------ANAGQVDRAREVYKMIH------KYN---IKGT--------PEVYT 230 (670)
Q Consensus 181 ~~~~~~~~pd~~t~~~li~~~-------------~~~g~~~~A~~~~~~m~------~~~---~~~~--------~~~~~ 230 (670)
... +..+....|....... .+.++++.|..++.++. +.. ++|+ ...|.
T Consensus 157 l~~--P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~ 234 (530)
T 2ooe_A 157 CVN--PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWK 234 (530)
T ss_dssp TTS--CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHH
T ss_pred Hhc--hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHH
Confidence 863 1121123333222211 12456778888877632 211 2443 35677
Q ss_pred HHHHHHHhc----CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCChH-------HHHHHHHHHH
Q 005905 231 IAINCCSQT----GDW----EFACSVYDDMTKKGVIPDEVFLSALIDFAGH-------AGKVE-------AAFEILQEAK 288 (670)
Q Consensus 231 ~li~~~~~~----g~~----~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~-------~g~~~-------~A~~i~~~m~ 288 (670)
..+...... ++. ..+..+|++.+.... -+...|..+...+.+ .|+++ +|..+++...
T Consensus 235 ~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al 313 (530)
T 2ooe_A 235 KYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAI 313 (530)
T ss_dssp HHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHH
Confidence 766554432 233 478889999887643 367888888888775 79987 8999999998
Q ss_pred HCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC-H
Q 005905 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-T 366 (670)
Q Consensus 289 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~ 366 (670)
+.-.+.+...|..++..+.+.|++++|..+|+++.+... .+ ...|..++..+.+.|++++|.++|++..+. .|+ .
T Consensus 314 ~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~ 390 (530)
T 2ooe_A 314 STLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED-IDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRH 390 (530)
T ss_dssp TTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCT
T ss_pred HHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccc-cCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCch
Confidence 733355688999999999999999999999999998632 23 358999999999999999999999999875 333 3
Q ss_pred HHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--hHHHHHHhHHHhhhhcCCCcc-chhhhH--
Q 005905 367 ITYSILLVA-CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQ-IENKWT-- 440 (670)
Q Consensus 367 ~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r--~~~~a~~l~~a~~~~~~~~~~-~~~~~~-- 440 (670)
..|...... +...|+.++|..+|+...+.. +-+...+..+++.+.+ .+++|..+.+......+..+. ...-|.
T Consensus 391 ~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~ 469 (530)
T 2ooe_A 391 HVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARF 469 (530)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 333332222 346899999999999988753 2356777788877665 677777776644333222222 122342
Q ss_pred ----------HHHHHHHHHHHH
Q 005905 441 ----------SLALMVYREAIV 452 (670)
Q Consensus 441 ----------~~A~~~~~~m~~ 452 (670)
+.+..+++++++
T Consensus 470 ~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 470 LAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 246677777765
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.2e-12 Score=126.10 Aligned_cols=226 Identities=11% Similarity=0.024 Sum_probs=193.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CC----HH
Q 005905 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK--GT----PE 227 (670)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~----~~ 227 (670)
...|..+...|...|++++|+.+|++.... . .+...+..+..++...|++++|.+.|+.+.+.... ++ ..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~--~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWEL--H--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--S--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh--h--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 456888899999999999999999999885 2 67788999999999999999999999988775321 12 57
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHH
Q 005905 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307 (670)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~ 307 (670)
+|..+...|...|++++|...|++..+.. |+. ..+...|++++|...++.+.+.. +.+...+..+...|.
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 150 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYF 150 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHH
Confidence 89999999999999999999999998864 443 34667788999999999998875 456778889999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005905 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387 (670)
Q Consensus 308 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 387 (670)
..|++++|...|++..+.. +.+..+|..+...|...|++++|+..|++..+.. +.+...|..+..++.+.|++++|..
T Consensus 151 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 151 TKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999998765 3478899999999999999999999999998752 3457888889999999999999999
Q ss_pred HHHHHHHC
Q 005905 388 LLSQAKED 395 (670)
Q Consensus 388 ~~~~m~~~ 395 (670)
.|++..+.
T Consensus 229 ~~~~a~~~ 236 (258)
T 3uq3_A 229 TLDAARTK 236 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99988763
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.53 E-value=1e-12 Score=125.53 Aligned_cols=199 Identities=15% Similarity=-0.015 Sum_probs=122.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 005905 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 230 (670)
Q Consensus 151 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 230 (670)
+++...|..+...+.+.|++++|+..|++..+.. +.+...+..+...+.+.|++++|...|++..+.+ +.+...+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~ 77 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN---PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYM 77 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS---SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHH
Confidence 4556677777777888888888888888877641 2345667777777778888888888888777765 55667777
Q ss_pred HHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHH
Q 005905 231 IAINCCSQT-----------GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 299 (670)
Q Consensus 231 ~li~~~~~~-----------g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~ 299 (670)
.+..+|.+. |++++|...|++..+.... +...+..+..++...|++++|...|++..+.. .+...+
T Consensus 78 ~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~ 154 (217)
T 2pl2_A 78 VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIR 154 (217)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHH
T ss_pred HHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHH
Confidence 777777777 6666666666666665432 45556666666666666666666666666655 455666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 005905 300 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357 (670)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 357 (670)
..+..+|...|++++|...|++..+.. +.+...+..+...+...|++++|+..|++.
T Consensus 155 ~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 155 SALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666666666666666665543 224555666666666666666666665543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.51 E-value=6.7e-12 Score=122.46 Aligned_cols=200 Identities=12% Similarity=-0.017 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005905 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 233 (670)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 233 (670)
...|..+...|...|++++|+.+|+++.... +.+...+..+...+...|++++|.+.|+++.+.. +.+..++..+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 112 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID---PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYG 112 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHH
Confidence 3456666677777777777777777766531 2345566666667777777777777777766654 34566666667
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCH
Q 005905 234 NCCSQTGDWEFACSVYDDMTKKGVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312 (670)
Q Consensus 234 ~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 312 (670)
..|...|++++|.++|+++.+.+..| +...+..+..++...|++++|...++++.+.. +.+..++..+...|...|++
T Consensus 113 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 113 GFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCH
Confidence 77777777777777777766522233 33455555666666666666666666665543 33455566666666666666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 313 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
++|...|+++.+.. +.+...+..+...|...|+.++|.+.++++.+
T Consensus 192 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 192 VPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 66666666655443 23455555566666666666666666666655
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=1e-11 Score=133.44 Aligned_cols=298 Identities=11% Similarity=-0.003 Sum_probs=168.1
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHhhhC------------CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC------
Q 005905 61 KVYHARFFNVCKSQKAIKEAFRFFKLV------------PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG------ 122 (670)
Q Consensus 61 ~~~~~~l~~~~~~~~~~~~A~~~~~~~------------~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g------ 122 (670)
..++..+..++...|++++|++.|++. ......+|+.+..+|...|++++|...|++..+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 344455666666667777777666532 12235567777777777777777777776655420
Q ss_pred CC-CCHHHHHHHHHHHHhcC--CHHHHHh------cCCC-CHHHHHHHHHH---HHhcCCHHHHHHHHHHHhhCCCCCCC
Q 005905 123 LK-ADCKLYTTLITTCAKSG--KVDAMFE------NVKP-DRVVFNALITA---CGQSGAVDRAFDVLAEMNAEVHPVDP 189 (670)
Q Consensus 123 ~~-pd~~~~~~li~~~~~~g--~~~~~~~------~~~~-~~~~~~~li~~---~~~~g~~~~A~~l~~~m~~~~~~~~p 189 (670)
.. ....++..+..++.+.| +++++.+ .+.| +...+..+..+ +...++.++|++.|++..+.. +.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~---p~ 207 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN---PD 207 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC---SS
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC---Cc
Confidence 01 12344554444444443 3444332 1223 34444444333 334566677777777766531 22
Q ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 005905 190 DHITIGALMKACAN----AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265 (670)
Q Consensus 190 d~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 265 (670)
+...+..+...+.. .|++++|.+.+++..... +.+..++..+...|.+.|++++|...|++..+.... +..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHH
Confidence 34444444444443 356677777777776654 556677777777777777777777777777766433 445555
Q ss_pred HHHHHHHhc-------------------CChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005905 266 ALIDFAGHA-------------------GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326 (670)
Q Consensus 266 ~li~~~~~~-------------------g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 326 (670)
.+..+|... +..+.|...+....+.. +.+..++..+...|...|++++|...|++..+..
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKE 364 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 554444221 22456666666666554 3344566677778888888888888888777654
Q ss_pred CCCCHH--HHHHHHH-HHHhCCChhHHHHHHHHHHhCCCCCCH
Q 005905 327 LKPTVS--TMNALIT-ALCDGDQLPKTMEVLSDMKSLGLCPNT 366 (670)
Q Consensus 327 ~~p~~~--~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p~~ 366 (670)
..+... .+..+.. .+...|+.++|+..|++..+ +.|+.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~ 405 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKS 405 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCC
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCccc
Confidence 322211 1222221 23466778888888877766 34554
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-11 Score=118.37 Aligned_cols=201 Identities=8% Similarity=-0.057 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005905 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 233 (670)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 233 (670)
...|..+...|...|++++|++.|+++.... +.+...+..+...+...|++++|.+.|+.+.+.. +.+..++..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD---PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 4455566666666666666666666665531 2234555566666666666666666666665543 34555666666
Q ss_pred HHHHhc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC
Q 005905 234 NCCSQT-GDWEFACSVYDDMTKKGVIPD-EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311 (670)
Q Consensus 234 ~~~~~~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~ 311 (670)
..|... |++++|...|+++.+.+..|+ ...+..+..++...|++++|...+..+.+.. +.+...+..+...|.+.|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence 666666 666666666666655222222 3445555555666666666666666555543 2334555555555666666
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 312 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
+++|...|+++.+.....+...+..+...+...|+.++|..+++.+.+
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 666666665555433213444555555555555555555555555543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.49 E-value=3e-12 Score=122.31 Aligned_cols=201 Identities=12% Similarity=-0.052 Sum_probs=162.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005905 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267 (670)
Q Consensus 188 ~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 267 (670)
+++...+..+...+.+.|++++|...|+...+.. +.+...+..+..++.+.|++++|...|++..+.... +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 3566788888999999999999999999999876 678899999999999999999999999999987654 67788889
Q ss_pred HHHHHhc-----------CChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 005905 268 IDFAGHA-----------GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 336 (670)
Q Consensus 268 i~~~~~~-----------g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 336 (670)
..++... |++++|...++...+.. +-+...+..+..+|...|++++|...|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 9999999 99999999999998875 4567888999999999999999999999998877 68899999
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 337 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 337 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 394 (670)
+..+|...|++++|+..|++..+.. +.+...+..+..++...|++++|...|++...
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 9999999999999999999998742 33577788888899999999999999876543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-11 Score=119.48 Aligned_cols=208 Identities=12% Similarity=0.031 Sum_probs=179.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005905 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270 (670)
Q Consensus 191 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 270 (670)
...+..+...+...|++++|.+.|+++.+.. +.+..++..+...|...|++++|.+.|+++.+.... +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 4567788889999999999999999998875 567889999999999999999999999999887543 77888999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhH
Q 005905 271 AGHAGKVEAAFEILQEAKNQGISV-GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349 (670)
Q Consensus 271 ~~~~g~~~~A~~i~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 349 (670)
|...|++++|.++++.+.+.+..| +...+..+...|...|++++|...|++..+.. +.+...+..+...|...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998733333 56788899999999999999999999988765 3468899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 005905 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404 (670)
Q Consensus 350 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 404 (670)
|...|+++.+. .+.+...+..+...+...|+.++|.++++.+.+.. |+...+
T Consensus 194 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~ 245 (252)
T 2ho1_A 194 ARQYYDLFAQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY--PGSLEY 245 (252)
T ss_dssp HHHHHHHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSHHH
T ss_pred HHHHHHHHHHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCCHHH
Confidence 99999999875 24567778888889999999999999999998754 544433
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=7.4e-11 Score=126.71 Aligned_cols=302 Identities=10% Similarity=-0.026 Sum_probs=211.7
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHhcCCHHHHHh----------c---
Q 005905 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEA--------GLKADCKLYTTLITTCAKSGKVDAMFE----------N--- 149 (670)
Q Consensus 91 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~pd~~~~~~li~~~~~~g~~~~~~~----------~--- 149 (670)
....||.|...+...|++++|++.|++.++. .-+....+|+.+..+|...|+++++.. .
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3567999999999999999999999887642 122345788999999999999887643 1
Q ss_pred -CC-CCHHHHHHHHHHHHhc--CCHHHHHHHHHHHhhCCCCCCCCH-HHHHHHHHH---HHHcCCHHHHHHHHHHHHHcC
Q 005905 150 -VK-PDRVVFNALITACGQS--GAVDRAFDVLAEMNAEVHPVDPDH-ITIGALMKA---CANAGQVDRAREVYKMIHKYN 221 (670)
Q Consensus 150 -~~-~~~~~~~~li~~~~~~--g~~~~A~~l~~~m~~~~~~~~pd~-~t~~~li~~---~~~~g~~~~A~~~~~~m~~~~ 221 (670)
.. ....+++.+..++... +++++|++.|++.... .|+. ..+..+..+ +...++.++|++.|++..+.+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~----~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK----KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 11 2345666666666554 4689999999998874 4543 333333333 445677888999998888765
Q ss_pred CCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHH
Q 005905 222 IKGTPEVYTIAINCCSQ----TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 297 (670)
Q Consensus 222 ~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~ 297 (670)
+.+..++..+...+.. .|++++|...+++....... +...+..+...|...|++++|...+.+..+.. +.+..
T Consensus 206 -p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 282 (472)
T 4g1t_A 206 -PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAY 282 (472)
T ss_dssp -SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHH
T ss_pred -CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHH
Confidence 5566777666555544 46778899999988876543 67788889999999999999999999988765 44566
Q ss_pred HHHHHHHHHHhc-------------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 005905 298 SYSSLMGACSNA-------------------KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358 (670)
Q Consensus 298 ~~~~li~~~~~~-------------------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 358 (670)
++..+...|... +.++.|...|++..+.. +.+..++..+...|...|++++|++.|++..
T Consensus 283 ~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL 361 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEF 361 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHH
Confidence 777776665432 23567777787776654 3356678888899999999999999999988
Q ss_pred hCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 005905 359 SLGLCPNTI--TYSILLV-ACERKDDVEVGLMLLSQAKEDGVIPNLV 402 (670)
Q Consensus 359 ~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~m~~~g~~p~~~ 402 (670)
+....|... .+..+.. ...+.|+.++|+..|.+..+. .|+..
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~ 406 (472)
T 4g1t_A 362 SKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSR 406 (472)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCH
T ss_pred hcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccH
Confidence 753222211 1222222 234678999999999888874 35543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.2e-11 Score=118.88 Aligned_cols=227 Identities=11% Similarity=0.016 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHH
Q 005905 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVD 171 (670)
Q Consensus 92 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 171 (670)
...|..+...+...|++++|+..|+++.+.. .+..++..+. ..|...|+++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~---------------------------~~~~~~~~~~ 55 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRA---------------------------AAEYEKGEYE 55 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHH---------------------------HHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHH---------------------------HHHHHcccHH
Confidence 3456777788888888888888888887765 4444444444 4444445555
Q ss_pred HHHHHHHHHhhCCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005905 172 RAFDVLAEMNAEVHPVDPD----HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247 (670)
Q Consensus 172 ~A~~l~~~m~~~~~~~~pd----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 247 (670)
+|+..|++.........++ ...+..+...+...|++++|...|+++.+.. |+. ..+.+.|++++|..
T Consensus 56 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~ 126 (258)
T 3uq3_A 56 TAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELK 126 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHH
Confidence 5555555544321111122 3455555566666666666666666655533 221 23445556666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 005905 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327 (670)
Q Consensus 248 l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 327 (670)
.++++...... +...+..+...+...|++++|...++.+.+.. +.+..++..+...|.+.|++++|...|++..+..
T Consensus 127 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~- 203 (258)
T 3uq3_A 127 KAEAEAYVNPE-KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD- 203 (258)
T ss_dssp HHHHHHHCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHcCcc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-
Confidence 66666554322 34455566666666666666666666666554 3345666667777777777777777777666543
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 328 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
+.+...|..+...|...|++++|.+.|++..+
T Consensus 204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 204 PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 23466666777777777777777777776655
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-10 Score=114.71 Aligned_cols=224 Identities=11% Similarity=-0.016 Sum_probs=196.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHH
Q 005905 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN----AGQVDRAREVYKMIHKYNIKGTPEV 228 (670)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~ 228 (670)
+..++..+...|...|++++|+..|++..+. -+...+..+...|.. .+++++|.+.|++..+.+ +..+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL-----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 5667888889999999999999999999873 245678888889999 999999999999998876 6788
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCccHHHHH
Q 005905 229 YTIAINCCSQ----TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH----AGKVEAAFEILQEAKNQGISVGIISYS 300 (670)
Q Consensus 229 ~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~i~~~m~~~~~~~~~~~~~ 300 (670)
+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...++...+.+ +...+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 9999999999 999999999999999875 67888889999998 999999999999999876 567788
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 005905 301 SLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKSLGLCPNTITYSIL 372 (670)
Q Consensus 301 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 372 (670)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|++.|++..+.+ | ...+..+
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~-~~a~~~l 224 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--N-GGGCFNL 224 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--C-HHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--C-HHHHHHH
Confidence 88888988 999999999999988764 67888889999999 999999999999998864 2 6677777
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCC
Q 005905 373 LVACER----KDDVEVGLMLLSQAKEDG 396 (670)
Q Consensus 373 l~a~~~----~g~~~~a~~~~~~m~~~g 396 (670)
...|.+ .++.++|.++|++..+.|
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 788888 899999999999998876
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.9e-11 Score=115.29 Aligned_cols=211 Identities=7% Similarity=-0.088 Sum_probs=178.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005905 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269 (670)
Q Consensus 190 d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~ 269 (670)
+...+..+...+...|++++|.+.|+.+.+.. +.+..++..+...|...|++++|...|+++.+.... +..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 45677888899999999999999999998875 567889999999999999999999999999887543 7788899999
Q ss_pred HHHhc-CChHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCh
Q 005905 270 FAGHA-GKVEAAFEILQEAKNQGISV-GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347 (670)
Q Consensus 270 ~~~~~-g~~~~A~~i~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 347 (670)
.+... |++++|...++.+.+.+..| +..++..+...|...|++++|...|+++.+.. +.+...+..+...|...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 99999 99999999999998843233 46788899999999999999999999988764 33688899999999999999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 005905 348 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 405 (670)
Q Consensus 348 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 405 (670)
++|...|++..+.....+...+..+...+...|+.+.+..+++.+.+.. |+...+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~ 219 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF--PYSEELQ 219 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHH
Confidence 9999999998875311567777777788899999999999999887643 5544433
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.46 E-value=2.8e-10 Score=130.30 Aligned_cols=290 Identities=13% Similarity=0.155 Sum_probs=126.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCC--------------------CCchHHHHHHHHHHHhhhhhHHHHHHHhhhCCCCCH
Q 005905 33 NRLIRQGRISECIDLLEDMERKGL--------------------LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92 (670)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~g~--------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 92 (670)
..++..|++++|..+|++.....- ......++..+.+++...|++++|++.|.+. .|.
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~ 1134 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDP 1134 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CCh
Confidence 445577888888888877521100 0111222223334444444444444444332 233
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhc-CCCCHHHHHHHHHHHHhcCCHH
Q 005905 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN-VKPDRVVFNALITACGQSGAVD 171 (670)
Q Consensus 93 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~ 171 (670)
..|.-++.+|.+.|++++|.+.|....+.. ++....+.++.+|++.+++++..+- -.++...|..+...|...|+++
T Consensus 1135 say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~Ye 1212 (1630)
T 1xi4_A 1135 SSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYD 1212 (1630)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHH
Confidence 334444444444444444444444333321 2222222344444444444432111 1233334444444444444444
Q ss_pred HHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005905 172 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251 (670)
Q Consensus 172 ~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 251 (670)
+|..+|... ..|..+...+.+.|+++.|.+.+++. .+..+|..+-.+|...|++..|......
T Consensus 1213 eA~~~Y~kA-----------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~ 1275 (1630)
T 1xi4_A 1213 AAKLLYNNV-----------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH 1275 (1630)
T ss_pred HHHHHHHhh-----------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 444444432 13444444444444444444444433 1224444444444444444444443322
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCC
Q 005905 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA--KNWQKALELYEHMKSIKLKP 329 (670)
Q Consensus 252 m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~p 329 (670)
+..+...+..++..|.+.|.+++|+.+++...... +-....|+-|...|++. +++.++.+.|..-.. ++|
T Consensus 1276 -----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k 1347 (1630)
T 1xi4_A 1276 -----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPK 1347 (1630)
T ss_pred -----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cch
Confidence 11233344455555555555555555555444333 22333444444444432 234444444443211 111
Q ss_pred ------CHHHHHHHHHHHHhCCChhHHH
Q 005905 330 ------TVSTMNALITALCDGDQLPKTM 351 (670)
Q Consensus 330 ------~~~~~~~li~~~~~~g~~~~A~ 351 (670)
+...|..++..|.+.|+++.|.
T Consensus 1348 ~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1348 VLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 3444556666666666666555
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=7e-12 Score=121.37 Aligned_cols=201 Identities=12% Similarity=0.096 Sum_probs=134.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005905 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 232 (670)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 232 (670)
....|..+...+...|++++|..+|+++... .+.+...+..+...+...|++++|.+.|+.+.+.. +.+..++..+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 97 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE---NKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGA 97 (243)
T ss_dssp --------------------CCTTHHHHHTT---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHH
Confidence 4556777777788888888888888888764 23356677777788888888888888888877765 4567778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCH
Q 005905 233 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312 (670)
Q Consensus 233 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 312 (670)
...|...|++++|...|+++.+.... +...+..+...+...|++++|...++++.+.. +.+..++..+...|.+.|++
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCH
Confidence 88888888888888888887776532 56677777777788888888888888777654 44566777777777788888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 005905 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360 (670)
Q Consensus 313 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 360 (670)
++|...|+++.+.. +.+..+|..+...|...|++++|.+.|+++.+.
T Consensus 176 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 176 DEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 88888887776554 235667777777777778888888777777663
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.43 E-value=3.3e-11 Score=125.00 Aligned_cols=246 Identities=11% Similarity=-0.001 Sum_probs=203.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCC-CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHH
Q 005905 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQ-VDRAREVYKMIHKYNIKGTPEVYT 230 (670)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p-d~~t~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~ 230 (670)
+...|+.+...+.+.|++++|+..|++.... .| +...|..+..++...|+ +++|+..|+++.+.+ +.+..+|+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l----~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~ 170 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIEL----NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWH 170 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHh----CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHH
Confidence 3567888889999999999999999999875 45 46778889999999997 999999999999987 66889999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh-c
Q 005905 231 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN-A 309 (670)
Q Consensus 231 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~-~ 309 (670)
.+..+|.+.|++++|+..|+++++.... +...|..+..++...|++++|+..++.+++.. +-+...|+.+..+|.+ .
T Consensus 171 ~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~ 248 (382)
T 2h6f_A 171 HRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTT 248 (382)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999998765 88899999999999999999999999999886 5578899999999999 6
Q ss_pred CCHHHH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHhCC--ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--
Q 005905 310 KNWQKA-----LELYEHMKSIKLKPTVSTMNALITALCDGD--QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD-- 380 (670)
Q Consensus 310 g~~~~A-----~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g-- 380 (670)
|..++| ...|++..+.. +-+...|+.+...+...| ++++|++.+.++ +. -+.+...+..+..+|.+.|
T Consensus 249 ~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~ 325 (382)
T 2h6f_A 249 GYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLEN 325 (382)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcc
Confidence 665777 58888887765 337889999999999988 689999999988 32 3445677888888888764
Q ss_pred -------CHHHHHHHHHHH-HHCCCCCCHHH-HHHHHHH
Q 005905 381 -------DVEVGLMLLSQA-KEDGVIPNLVM-FKCIIGM 410 (670)
Q Consensus 381 -------~~~~a~~~~~~m-~~~g~~p~~~~-~~~li~~ 410 (670)
.+++|.++|+++ .+. .|...- |..+...
T Consensus 326 ~~~~~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~ 362 (382)
T 2h6f_A 326 QCDNKEDILNKALELCEILAKEK--DTIRKEYWRYIGRS 362 (382)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHH
Confidence 358999999988 553 354443 3334343
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=6.9e-12 Score=123.94 Aligned_cols=196 Identities=12% Similarity=-0.025 Sum_probs=105.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005905 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 235 (670)
Q Consensus 156 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 235 (670)
+|..+...|...|++++|+..|++..... +.+...+..+...+...|++++|.+.|+++.+.. +.+..++..+..+
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~ 120 (275)
T 1xnf_A 45 LLYERGVLYDSLGLRALARNDFSQALAIR---PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIA 120 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHH
Confidence 44455555666666666666666665531 2235556666666666666666666666666543 3345566666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHH
Q 005905 236 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315 (670)
Q Consensus 236 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 315 (670)
|.+.|++++|...|+++.+.. |+.......+..+...|++++|...+....... +++...+ .++..+...++.++|
T Consensus 121 ~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a 196 (275)
T 1xnf_A 121 LYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTL 196 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHH
Confidence 666666666666666665543 222233333334445566666666665554432 2222222 244555555555666
Q ss_pred HHHHHHHHhCCCC---CCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 316 LELYEHMKSIKLK---PTVSTMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 316 ~~~~~~m~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
...+....+.... .+..+|..+...|...|++++|...|++...
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 197 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666555432110 0134555555555566666666666665554
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.5e-11 Score=119.04 Aligned_cols=203 Identities=14% Similarity=0.075 Sum_probs=161.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005905 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268 (670)
Q Consensus 189 pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li 268 (670)
.....|..+...+...|++++|...|+++.+.. +.+..++..+...|.+.|++++|...|+++.+.... +...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHH
Confidence 344567778888999999999999999998865 567889999999999999999999999999887543 778889999
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChh
Q 005905 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348 (670)
Q Consensus 269 ~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 348 (670)
..+...|++++|.+.++.+.+.. +.+..++..+...|.+.|++++|...|+++.+.. +.+...+..+...|...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998875 5567889999999999999999999999988764 347889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005905 349 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396 (670)
Q Consensus 349 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g 396 (670)
+|+..|++..+.. +.+..++..+..++...|++++|..+++++.+..
T Consensus 177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999999988752 4467888899999999999999999999998854
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.6e-11 Score=117.90 Aligned_cols=239 Identities=9% Similarity=-0.035 Sum_probs=191.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHH
Q 005905 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG--TPEVYTIAI 233 (670)
Q Consensus 156 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li 233 (670)
.+......+...|++++|+..|++..+.. +.+...+..+...+...|++++|...|+.+.+....+ ...+|..+.
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK---YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT---CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 45566778899999999999999998752 2234478888889999999999999999998843222 244588999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHH
Q 005905 234 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313 (670)
Q Consensus 234 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 313 (670)
..|...|++++|...|++..+.... +..++..+...|...|++++|...+++..+.. +.+..++..+...+...++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887544 66789999999999999999999999988774 556777777773444456999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC---hhHHHHHHHHHHhCC-CCCC------HHHHHHHHHHHHhcCCHH
Q 005905 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQ---LPKTMEVLSDMKSLG-LCPN------TITYSILLVACERKDDVE 383 (670)
Q Consensus 314 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g-~~p~------~~t~~~ll~a~~~~g~~~ 383 (670)
+|.+.|+++.+.. +.+...+..+...+...|+ +++|...|++..+.. -.|+ ...|..+...|...|+++
T Consensus 160 ~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999998765 3357888888888888888 888999999887631 1233 256777888899999999
Q ss_pred HHHHHHHHHHHCCCCCCHH
Q 005905 384 VGLMLLSQAKEDGVIPNLV 402 (670)
Q Consensus 384 ~a~~~~~~m~~~g~~p~~~ 402 (670)
+|..+|+++.+.. |+..
T Consensus 239 ~A~~~~~~al~~~--p~~~ 255 (272)
T 3u4t_A 239 KADAAWKNILALD--PTNK 255 (272)
T ss_dssp HHHHHHHHHHHHC--TTCH
T ss_pred HHHHHHHHHHhcC--ccHH
Confidence 9999999998854 5533
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=3.4e-11 Score=118.87 Aligned_cols=223 Identities=12% Similarity=-0.023 Sum_probs=181.1
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 005905 165 GQSGAVDRAFDVLAEMNAEVHPVDP--DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 242 (670)
Q Consensus 165 ~~~g~~~~A~~l~~~m~~~~~~~~p--d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 242 (670)
...|++++|+..|+++.... ...+ +..++..+...+...|++++|...|+++.+.. +.+..+|..+...|...|++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASR-ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred CccchHHHHHHHHHHHHhcc-cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence 34578999999999998752 1112 35678888999999999999999999999876 56789999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005905 243 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322 (670)
Q Consensus 243 ~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 322 (670)
++|...|++..+.... +...+..+..+|...|++++|...++.+.+.. |+.......+..+...|++++|...|++.
T Consensus 94 ~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999987543 67889999999999999999999999998864 33334444555667779999999999877
Q ss_pred HhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005905 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-----TITYSILLVACERKDDVEVGLMLLSQAKEDG 396 (670)
Q Consensus 323 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g 396 (670)
.... +++...+. ++..+...++.++|+..+.+.... .|+ ..++..+..++.+.|++++|...|+++.+..
T Consensus 171 ~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 171 FEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATD--NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCS--HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcc--cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 6653 33444454 677778888889999999988753 232 4778888899999999999999999998754
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-09 Score=107.87 Aligned_cols=225 Identities=12% Similarity=0.008 Sum_probs=186.7
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHh---
Q 005905 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQ--- 166 (670)
Q Consensus 90 ~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~--- 166 (670)
.+..++..+...+...|++++|+..|++..+.+ +. .++..+...|..
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~---------------------------~a~~~lg~~~~~g~~ 53 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---EN---------------------------SGCFNLGVLYYQGQG 53 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CH---------------------------HHHHHHHHHHHHTSS
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CH---------------------------HHHHHHHHHHHcCCC
Confidence 356677888888889999999999999887732 22 234445556666
Q ss_pred -cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---
Q 005905 167 -SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN----AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ--- 238 (670)
Q Consensus 167 -~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~--- 238 (670)
.+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +..++..+...|..
T Consensus 54 ~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~ 125 (273)
T 1ouv_A 54 VEKNLKKAASFYAKACDLN-----YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKV 125 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSS
T ss_pred cCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCC
Confidence 888999999999988752 66788888889998 999999999999998875 67888999999998
Q ss_pred -cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh----c
Q 005905 239 -TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH----AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN----A 309 (670)
Q Consensus 239 -~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~----~ 309 (670)
.+++++|...|++..+.+ +...+..+...|.. .+++++|...++...+.+ +...+..+..+|.. .
T Consensus 126 ~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 126 VTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSC
T ss_pred cccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 999999999999998876 56677778888887 899999999999998875 46778888999999 9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCChhHHHHHHHHHHhCC
Q 005905 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKSLG 361 (670)
Q Consensus 310 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g 361 (670)
+++++|...|++..+.+ +...+..+...|.. .+++++|++.|++..+.|
T Consensus 200 ~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 200 KNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 99999999999988764 37788888889998 899999999999988754
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.38 E-value=7.2e-11 Score=116.47 Aligned_cols=237 Identities=11% Similarity=0.020 Sum_probs=169.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005905 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAF 174 (670)
Q Consensus 95 y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 174 (670)
+......+...|++++|+..|++.++.. |+ +...|..+...|...|++++|+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~--------------------------~~~~~~~l~~~~~~~~~~~~A~ 57 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK--YN--------------------------SPYIYNRRAVCYYELAKYDLAQ 57 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT--CC--------------------------CSTTHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC--CC--------------------------cHHHHHHHHHHHHHHhhHHHHH
Confidence 4455667778888888888888887753 22 2224555666777788888888
Q ss_pred HHHHHHhhCCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005905 175 DVLAEMNAEVHPVDPD--HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252 (670)
Q Consensus 175 ~l~~~m~~~~~~~~pd--~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 252 (670)
..|++..... -.|+ ...|..+...+...|++++|.+.|+...+.. +.+..+|..+...|...|++++|...|++.
T Consensus 58 ~~~~~a~~~~--~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 134 (272)
T 3u4t_A 58 KDIETYFSKV--NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQ 134 (272)
T ss_dssp HHHHHHHTTS--CTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGG
T ss_pred HHHHHHHhcc--CchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 8888887632 1222 3347778888888888888888888888765 456678888888888888888888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCC-CC
Q 005905 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN---WQKALELYEHMKSIK-LK 328 (670)
Q Consensus 253 ~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~-~~ 328 (670)
.+... .+...+..+...+...+++++|.+.++.+.+.. +.+...+..+..++...|+ +++|...|++..+.. ..
T Consensus 135 l~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 212 (272)
T 3u4t_A 135 IRPTT-TDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPG 212 (272)
T ss_dssp CCSSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGG
T ss_pred hhcCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcc
Confidence 77633 255666666624444558888888888888764 4446777777788887777 777887777765431 11
Q ss_pred CC------HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH
Q 005905 329 PT------VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366 (670)
Q Consensus 329 p~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 366 (670)
|+ ..+|..+...|...|++++|.+.|++..+. .|+.
T Consensus 213 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~ 254 (272)
T 3u4t_A 213 GAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL--DPTN 254 (272)
T ss_dssp GGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CccH
Confidence 22 256777888888889999999999888874 4543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-10 Score=122.91 Aligned_cols=341 Identities=11% Similarity=0.010 Sum_probs=230.7
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhH---HHHHHHhhhCCCCCHHHHHHHHHHHHc
Q 005905 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI---KEAFRFFKLVPNPTLSTFNMLMSVCAS 104 (670)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~y~~li~~~~~ 104 (670)
+...-..+.+.|++++|+++|++..+.|- +..... +...+...|.. ++|+.+|++....+...+..+...+..
T Consensus 6 ~~~la~~~~~~g~~~~A~~~~~~aa~~g~-~~A~~~---Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 6 DQRLANEALKRGDTVTAQQNYQQLAELGY-SEAQVG---LADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAA 81 (452)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTC-CTGGGT---CC----------------------------CHHHHHHHHHT
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHHCCC-HHHHHH---HHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 34455666789999999999999988873 222211 33334445666 899999988765577777777775666
Q ss_pred CC-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH---HHhc-----CCCCHHHHHHHHHHHHhcCC--
Q 005905 105 SK-----DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---MFEN-----VKPDRVVFNALITACGQSGA-- 169 (670)
Q Consensus 105 ~g-----~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~---~~~~-----~~~~~~~~~~li~~~~~~g~-- 169 (670)
.+ ++++|+..|++..+.|.. + .+..|..+|...+..+. +++. -.-+...+..|...|...+.
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcc
Confidence 55 789999999999997743 3 66677777776654332 1110 11245566677778887774
Q ss_pred --HHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----C
Q 005905 170 --VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG---QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT----G 240 (670)
Q Consensus 170 --~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~----g 240 (670)
.+++..++...... .|+ .+..+...|...| +.++|.+.|+...+.| +++...+..+...|... +
T Consensus 159 ~~~~~a~~~~~~a~~~----~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 159 QHLDDVERICKAALNT----TDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp GGHHHHHHHHHHHTTT----CTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSC
T ss_pred cCHHHHHHHHHHHHcC----CHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCC
Confidence 45555555555432 444 7778888899999 9999999999999988 66667667777777655 7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC-----CH
Q 005905 241 DWEFACSVYDDMTKKGVIPDEVFLSALIDF-A--GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK-----NW 312 (670)
Q Consensus 241 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~~-~--~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g-----~~ 312 (670)
++++|...|++.. .| +...+..+-.. + ...++.++|.+.|++..+.| +...+..|..+|. .| ++
T Consensus 232 d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 232 DEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp CHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCH
T ss_pred CHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCH
Confidence 9999999999988 44 44555666655 4 56899999999999999887 5777788888887 55 99
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCCHHH
Q 005905 313 QKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE----RKDDVEV 384 (670)
Q Consensus 313 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~----~~g~~~~ 384 (670)
++|...|++.. .-+...+..|...|.. ..+.++|...|++..+.|. |+.. ..|-..|. ...+.++
T Consensus 304 ~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-~~A~--~~Lg~~y~~G~g~~~d~~~ 376 (452)
T 3e4b_A 304 KAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-NSAD--FAIAQLFSQGKGTKPDPLN 376 (452)
T ss_dssp HHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-TTHH--HHHHHHHHSCTTBCCCHHH
T ss_pred HHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-HHHH--HHHHHHHHhCCCCCCCHHH
Confidence 99999999877 3477888888888876 3489999999999998774 4433 33333443 2468999
Q ss_pred HHHHHHHHHHCCC
Q 005905 385 GLMLLSQAKEDGV 397 (670)
Q Consensus 385 a~~~~~~m~~~g~ 397 (670)
|..+|+...+.|.
T Consensus 377 A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 377 AYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCC
Confidence 9999999988874
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.36 E-value=2.3e-10 Score=118.62 Aligned_cols=246 Identities=11% Similarity=0.054 Sum_probs=193.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCC-H
Q 005905 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGA-V 170 (670)
Q Consensus 92 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~-~ 170 (670)
...|+.+..++...|++++|+..|+++++.. |+ +..+|+.+...|...|+ +
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~--------------------------~~~a~~~~g~~l~~~g~d~ 148 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN--AA--------------------------NYTVWHFRRVLLKSLQKDL 148 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TT--------------------------CHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--cc--------------------------CHHHHHHHHHHHHHcccCH
Confidence 5678888899999999999999999998853 33 34456666677777886 9
Q ss_pred HHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005905 171 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 250 (670)
Q Consensus 171 ~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 250 (670)
++|+..|++..... +-+...|..+..++...|++++|+..|+++.+.+ +.+..+|..+..++.+.|++++|+..|+
T Consensus 149 ~eAl~~~~~al~l~---P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~ 224 (382)
T 2h6f_A 149 HEEMNYITAIIEEQ---PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVD 224 (382)
T ss_dssp HHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHH
T ss_pred HHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 99999999988752 3356788888889999999999999999998876 6678899999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh-cCChHHH-----HHHHHHHHHCCCCccHHHHHHHHHHHHhcC--CHHHHHHHHHHH
Q 005905 251 DMTKKGVIPDEVFLSALIDFAGH-AGKVEAA-----FEILQEAKNQGISVGIISYSSLMGACSNAK--NWQKALELYEHM 322 (670)
Q Consensus 251 ~m~~~g~~p~~~t~~~li~~~~~-~g~~~~A-----~~i~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m 322 (670)
++++.... +...|+.+..++.. .|..++| +..++...+.. +-+...|+.+...|.+.| ++++|.+.+.++
T Consensus 225 ~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 225 QLLKEDVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 99988765 77888888888888 5665777 47888887765 456788888888898888 688999999888
Q ss_pred HhCCCCCCHHHHHHHHHHHHhCC---------ChhHHHHHHHHH-HhCCCCCCHHH-HHHHHHH
Q 005905 323 KSIKLKPTVSTMNALITALCDGD---------QLPKTMEVLSDM-KSLGLCPNTIT-YSILLVA 375 (670)
Q Consensus 323 ~~~~~~p~~~~~~~li~~~~~~g---------~~~~A~~l~~~m-~~~g~~p~~~t-~~~ll~a 375 (670)
+.. ..+...+..+...|.+.| ..++|+++|+++ .+ +.|...- |..+...
T Consensus 303 -~~~-p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~ 362 (382)
T 2h6f_A 303 -QPS-HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE--KDTIRKEYWRYIGRS 362 (382)
T ss_dssp -TTT-CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHH
T ss_pred -ccC-CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHH
Confidence 433 456788888988888864 258899999998 55 4565443 4333333
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.32 E-value=3.3e-10 Score=104.59 Aligned_cols=165 Identities=16% Similarity=0.050 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005905 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270 (670)
Q Consensus 191 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 270 (670)
...|..+...|...|++++|++.|++..+.+ +.+..+|..+..+|.+.|++++|...+......... +...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence 3445555555555555555555555555544 344555555555555555555555555555444332 34444444455
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHH
Q 005905 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 350 (670)
Q Consensus 271 ~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 350 (670)
+...++++.|...+....+.. +.+..++..+...|.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 555555555555555554443 3344555555555555556666655555555443 22455555555555555556566
Q ss_pred HHHHHHHHh
Q 005905 351 MEVLSDMKS 359 (670)
Q Consensus 351 ~~l~~~m~~ 359 (670)
++.|++..+
T Consensus 161 ~~~~~~al~ 169 (184)
T 3vtx_A 161 VKYFKKALE 169 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555554
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.31 E-value=2e-09 Score=108.67 Aligned_cols=219 Identities=14% Similarity=0.092 Sum_probs=176.1
Q ss_pred HHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHH-------HcCCH-------HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005905 171 DRAFDVLAEMNAEVHPVDPDHITIGALMKACA-------NAGQV-------DRAREVYKMIHKYNIKGTPEVYTIAINCC 236 (670)
Q Consensus 171 ~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~-------~~g~~-------~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 236 (670)
++|..+|++.... .+-+...|..++..+. +.|++ ++|..+|++..+.-.+.+...|..++..+
T Consensus 33 ~~a~~~~~~al~~---~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLV---LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 7888999999874 2335567777776665 35886 89999999998832255678999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHH-hcCCHHH
Q 005905 237 SQTGDWEFACSVYDDMTKKGVIPDEV-FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS-NAKNWQK 314 (670)
Q Consensus 237 ~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~-~~g~~~~ 314 (670)
.+.|++++|..+|++.++.... +.. .|..+...+.+.|++++|..+|+...+.. +.+...|........ ..|++++
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred HhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999986432 233 78899999999999999999999999875 344555655444433 3699999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005905 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-LCP--NTITYSILLVACERKDDVEVGLMLLSQ 391 (670)
Q Consensus 315 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~ 391 (670)
|..+|++..+.. +.+...|..++..+.+.|++++|..+|++..... +.| +...|..++....+.|+.+.|..++++
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999987654 3378899999999999999999999999999863 455 466788888888899999999999999
Q ss_pred HHHC
Q 005905 392 AKED 395 (670)
Q Consensus 392 m~~~ 395 (670)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8874
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.28 E-value=7.6e-10 Score=102.15 Aligned_cols=168 Identities=14% Similarity=0.052 Sum_probs=148.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 005905 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231 (670)
Q Consensus 152 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 231 (670)
.+..+|..+...|.+.|++++|++.|++..+.. +-+...+..+...|.+.|++++|...+....... +.+..++..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~ 78 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD---PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYI 78 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHH
Confidence 367789999999999999999999999998752 2356788889999999999999999999998876 567788888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC
Q 005905 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311 (670)
Q Consensus 232 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~ 311 (670)
+...+...++++.|...+.+..+.... +...+..+..+|.+.|++++|.+.|++..+.. +.+..++..+..+|.+.|+
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGL 156 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCC
Confidence 999999999999999999999887644 77888999999999999999999999998876 5678899999999999999
Q ss_pred HHHHHHHHHHHHhC
Q 005905 312 WQKALELYEHMKSI 325 (670)
Q Consensus 312 ~~~A~~~~~~m~~~ 325 (670)
+++|.+.|++..+.
T Consensus 157 ~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 157 RDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998875
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.27 E-value=2.7e-09 Score=107.63 Aligned_cols=225 Identities=9% Similarity=0.042 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCH-------HHHHHHHHHHh
Q 005905 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAV-------DRAFDVLAEMN 181 (670)
Q Consensus 109 ~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~-------~~A~~l~~~m~ 181 (670)
++|..+|++.+... +.+...|..+...+...++ .+.+.|++ ++|..+|++..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~--------------------~l~~~g~~~~~~~~~~~A~~~~~rAl 91 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSK--------------------LLAEKGDMNNAKLFSDEAANIYERAI 91 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHH--------------------HHHHTSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhch--------------------hhhhccchhhcccchHHHHHHHHHHH
Confidence 57777888877752 3355555555544432211 12345664 89999999998
Q ss_pred hCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 005905 182 AEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE-VYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259 (670)
Q Consensus 182 ~~~~~~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 259 (670)
.. +.|+ ...|..++..+.+.|++++|..+|+++.+.. +.+.. +|..+...+.+.|++++|..+|++..+....
T Consensus 92 ~~---~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~- 166 (308)
T 2ond_A 92 ST---LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART- 166 (308)
T ss_dssp TT---TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-
T ss_pred HH---hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-
Confidence 62 3454 5578889999999999999999999998854 23344 8999999999999999999999999887543
Q ss_pred CHHHHHHHHHHHH-hcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--CHHHHH
Q 005905 260 DEVFLSALIDFAG-HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK-LKP--TVSTMN 335 (670)
Q Consensus 260 ~~~t~~~li~~~~-~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p--~~~~~~ 335 (670)
+...|........ ..|+.++|..+|+...+.. +.+...|..++..+.+.|++++|..+|++..... ..| ....|.
T Consensus 167 ~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~ 245 (308)
T 2ond_A 167 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWA 245 (308)
T ss_dssp CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 4445544433322 3699999999999998764 4468889999999999999999999999998853 343 577899
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhC
Q 005905 336 ALITALCDGDQLPKTMEVLSDMKSL 360 (670)
Q Consensus 336 ~li~~~~~~g~~~~A~~l~~~m~~~ 360 (670)
.++..+.+.|+.++|..+++++.+.
T Consensus 246 ~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 246 RFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998873
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-10 Score=122.14 Aligned_cols=202 Identities=13% Similarity=0.022 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCC--------------------HHHHHH
Q 005905 193 TIGALMKACANAGQVDRAREVYKMIHKYNIK-GT----PEVYTIAINCCSQTGD--------------------WEFACS 247 (670)
Q Consensus 193 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~--------------------~~~A~~ 247 (670)
++..+...+...|++++|...+++..+.... ++ ..++..+...|...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 4444445555555555555555444332100 01 2244555555555555 555555
Q ss_pred HHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCC-ccHHHHHHHHHHHHhcCCHHHHHH
Q 005905 248 VYDDMTKK----GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GIS-VGIISYSSLMGACSNAKNWQKALE 317 (670)
Q Consensus 248 l~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~ 317 (670)
.+.+..+. +..| ...++..+...|...|++++|...+++..+. +.. ....++..+...|...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 55544321 1111 1234555555666666666666666655432 100 112356666677777777777777
Q ss_pred HHHHHHhCCC-CCC----HHHHHHHHHHHHhCCChhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 005905 318 LYEHMKSIKL-KPT----VSTMNALITALCDGDQLPKTMEVLSDMKSL----GLCPN-TITYSILLVACERKDDVEVGLM 387 (670)
Q Consensus 318 ~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~ 387 (670)
.|++..+... .++ ..++..+...|...|++++|...|++..+. +-.+. ..++..+...+...|++++|..
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 7766543210 011 446666777777777777777777766541 11111 3456666667777788888887
Q ss_pred HHHHHHH
Q 005905 388 LLSQAKE 394 (670)
Q Consensus 388 ~~~~m~~ 394 (670)
++++..+
T Consensus 329 ~~~~al~ 335 (406)
T 3sf4_A 329 FAEKHLE 335 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.27 E-value=3.6e-10 Score=118.92 Aligned_cols=278 Identities=14% Similarity=0.036 Sum_probs=193.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 005905 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRA 173 (670)
Q Consensus 94 ~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 173 (670)
.+..+...+...|++++|+..|+++++.+. .+.... ..+|..+...|...|++++|
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~-----------------------~~~~~~lg~~~~~~g~~~~A 105 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTL-----------------------SAIYSQLGNAYFYLGDYNKA 105 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHH-----------------------HHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHH-----------------------HHHHHHHHHHHHHCCCHHHH
Confidence 345566788889999999999999888632 122111 12345556666777777777
Q ss_pred HHHHHHHhhCCC--C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHhcCC----
Q 005905 174 FDVLAEMNAEVH--P-VDPDHITIGALMKACANAGQVDRAREVYKMIHKY----N-IKGTPEVYTIAINCCSQTGD---- 241 (670)
Q Consensus 174 ~~l~~~m~~~~~--~-~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----~-~~~~~~~~~~li~~~~~~g~---- 241 (670)
+..|++...... + .......+..+...|...|++++|...|++..+. + .+....++..+...|...|+
T Consensus 106 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 185 (411)
T 4a1s_A 106 MQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQ 185 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCccccc
Confidence 777776654200 0 0122456677778888889999998888876553 1 11224567788888888888
Q ss_pred -------------HHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----CccHHH
Q 005905 242 -------------WEFACSVYDDMTKK----GVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI-----SVGIIS 298 (670)
Q Consensus 242 -------------~~~A~~l~~~m~~~----g~~-p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~-----~~~~~~ 298 (670)
+++|...+++..+. +.. ....++..+...|...|++++|...+++..+... .....+
T Consensus 186 ~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 265 (411)
T 4a1s_A 186 RNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRA 265 (411)
T ss_dssp HSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 88888888776542 111 1234677788888999999999999888765321 111347
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHhCCChhHHHHHHHHHHhC----CCCC-CHHH
Q 005905 299 YSSLMGACSNAKNWQKALELYEHMKSIKLK-----PTVSTMNALITALCDGDQLPKTMEVLSDMKSL----GLCP-NTIT 368 (670)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t 368 (670)
+..+...|...|++++|...|++..+.... ....++..+...|...|++++|...|++.... +..+ ...+
T Consensus 266 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 345 (411)
T 4a1s_A 266 NSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARA 345 (411)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHH
Confidence 888899999999999999999887643110 12567888899999999999999999987652 1111 1346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 369 YSILLVACERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 369 ~~~ll~a~~~~g~~~~a~~~~~~m~~~ 395 (670)
+..+..+|...|++++|..+|++..+.
T Consensus 346 ~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 346 CWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 777888899999999999999888764
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.6e-10 Score=121.42 Aligned_cols=213 Identities=14% Similarity=0.013 Sum_probs=172.4
Q ss_pred HHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005905 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV-DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248 (670)
Q Consensus 170 ~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 248 (670)
+++++..+++.... ...+...+..+..++...|++ ++|.+.|++..+.. +.+..+|..+..+|.+.|++++|...
T Consensus 84 ~~~al~~l~~~~~~---~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 84 MEKTLQQMEEVLGS---AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHTT---CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhcc---CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 67777888877654 234677788888888899999 99999999888876 56688899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc---------CChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc--------CC
Q 005905 249 YDDMTKKGVIPDEVFLSALIDFAGHA---------GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA--------KN 311 (670)
Q Consensus 249 ~~~m~~~g~~p~~~t~~~li~~~~~~---------g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~--------g~ 311 (670)
|++..+.. |+...+..+..+|... |++++|.+.+++..+.. +.+...|..+..+|... |+
T Consensus 160 ~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 160 FSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccch
Confidence 99988774 5678888888888888 89999999999988875 55678888888888888 88
Q ss_pred HHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005905 312 WQKALELYEHMKSIKLK--PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389 (670)
Q Consensus 312 ~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 389 (670)
+++|...|++..+.... .+...|..+..+|...|++++|++.|++..+.. +-+...+..+..++...|++++|...+
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999988876421 378889999999999999999999999987742 234556777777888888888887755
Q ss_pred H
Q 005905 390 S 390 (670)
Q Consensus 390 ~ 390 (670)
.
T Consensus 316 ~ 316 (474)
T 4abn_A 316 G 316 (474)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.1e-10 Score=115.03 Aligned_cols=133 Identities=12% Similarity=-0.020 Sum_probs=76.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HH
Q 005905 263 FLSALIDFAGHAGKVEAAFEILQEAKNQ----GI-SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL-KPT----VS 332 (670)
Q Consensus 263 t~~~li~~~~~~g~~~~A~~i~~~m~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~ 332 (670)
++..+...+...|++++|...+++..+. +. .....++..+...|...|++++|...|++..+... .++ ..
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 4445555555556666666555554432 10 11133566666667777777777777666543210 011 44
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 333 TMNALITALCDGDQLPKTMEVLSDMKSL----GLCP-NTITYSILLVACERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 395 (670)
++..+...|...|++++|...+++.... +-.+ ...++..+...+.+.|++++|..++++..+.
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 5666677777777777777777766541 1111 1335566667777778888888777777653
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.2e-09 Score=113.93 Aligned_cols=309 Identities=9% Similarity=0.012 Sum_probs=198.1
Q ss_pred chhhHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCch-HH-HHHHH-HHHHhhhhhHHHHH-----------HHhhhCC
Q 005905 25 VSEQLHSYNRLIRQGRISECIDLLEDMERKG--LLDMD-KV-YHARF-FNVCKSQKAIKEAF-----------RFFKLVP 88 (670)
Q Consensus 25 ~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g--~~~~~-~~-~~~~l-~~~~~~~~~~~~A~-----------~~~~~~~ 88 (670)
+...+..|-..++.+++++|..+++++.+.- +..+. .. ++.++ .+.....+.++.+. +.++.+.
T Consensus 12 v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~ 91 (383)
T 3ulq_A 12 IGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEID 91 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHH
Confidence 4455666888889999999999999987542 11122 11 12211 11111223333333 4444332
Q ss_pred --CCCHH------HHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHH
Q 005905 89 --NPTLS------TFNMLMSVCASSKDSEGAFQVLRLVQEAGL-KADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNA 159 (670)
Q Consensus 89 --~~~~~------~y~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~ 159 (670)
+.+.. .|......+...|++++|+..|++..+.-. .+|... ...+|..
T Consensus 92 ~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----------------------~a~~~~~ 148 (383)
T 3ulq_A 92 KKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIE-----------------------KAEFFFK 148 (383)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHH-----------------------HHHHHHH
T ss_pred hcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHH-----------------------HHHHHHH
Confidence 11111 122355677889999999999998876311 122110 1234556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHH
Q 005905 160 LITACGQSGAVDRAFDVLAEMNAEVHPV----DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK-GT----PEVYT 230 (670)
Q Consensus 160 li~~~~~~g~~~~A~~l~~~m~~~~~~~----~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~ 230 (670)
+...|...|++++|+..|.+........ .....++..+...|...|++++|.+.|++..+.... ++ ..++.
T Consensus 149 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 228 (383)
T 3ulq_A 149 MSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLY 228 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 6666777777777777777665421011 112357788888888999999999988877653111 11 24677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCccHHHHHH
Q 005905 231 IAINCCSQTGDWEFACSVYDDMTKK----GV-IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GISVGIISYSS 301 (670)
Q Consensus 231 ~li~~~~~~g~~~~A~~l~~~m~~~----g~-~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~----~~~~~~~~~~~ 301 (670)
.+..+|...|++++|...|++..+. +. +....++..+..+|...|++++|...+++..+. +-+.....+..
T Consensus 229 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 308 (383)
T 3ulq_A 229 NIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEF 308 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888899999999999999888762 22 334567888888889999999999888887653 21222334667
Q ss_pred HHHHHHhcCC---HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 302 LMGACSNAKN---WQKALELYEHMKSIKLKP-TVSTMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 302 li~~~~~~g~---~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
+...|...|+ +++|..++++.. ..| ....+..+...|...|++++|.+.|++..+
T Consensus 309 l~~~~~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 309 LKSLYLSGPDEEAIQGFFDFLESKM---LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCc---CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888888 777877777652 122 344677788889999999999999988765
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.9e-10 Score=119.63 Aligned_cols=237 Identities=14% Similarity=0.013 Sum_probs=182.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC-H----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc----C-CCC
Q 005905 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-H----ITIGALMKACANAGQVDRAREVYKMIHKY----N-IKG 224 (670)
Q Consensus 155 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd-~----~t~~~li~~~~~~g~~~~A~~~~~~m~~~----~-~~~ 224 (670)
..+..+...+...|++++|+..|++.... .|+ . ..+..+...|...|++++|...|++..+. + .+.
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQA----GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHh----cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 34556677889999999999999999875 333 2 46778888999999999999999887653 1 122
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhcCC-----------------hHHHHH
Q 005905 225 TPEVYTIAINCCSQTGDWEFACSVYDDMTKK----G-VIPDEVFLSALIDFAGHAGK-----------------VEAAFE 282 (670)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g-~~p~~~t~~~li~~~~~~g~-----------------~~~A~~ 282 (670)
...++..+...|...|++++|...|++..+. + ......++..+...|...|+ +++|.+
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 3467888999999999999999999987654 1 11134577888889999999 999999
Q ss_pred HHHHHHHC----CC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhCCChhHHHH
Q 005905 283 ILQEAKNQ----GI-SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL-KPT----VSTMNALITALCDGDQLPKTME 352 (670)
Q Consensus 283 i~~~m~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~ 352 (670)
.+.+..+. +. .....++..+...|...|++++|...|++..+... .++ ..++..+...|...|++++|+.
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE 284 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 98886542 21 22345788899999999999999999998764311 112 2378889999999999999999
Q ss_pred HHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 353 VLSDMKSL----GLC-PNTITYSILLVACERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 353 l~~~m~~~----g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 395 (670)
.|++.... +.. ....++..+...+...|++++|..++++..+.
T Consensus 285 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 285 HYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI 332 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99987752 111 11466778888899999999999999988763
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.9e-09 Score=111.00 Aligned_cols=231 Identities=9% Similarity=-0.060 Sum_probs=173.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CC----CCHHHH
Q 005905 160 LITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITIGALMKACANAGQVDRAREVYKMIHKYN--IK----GTPEVY 229 (670)
Q Consensus 160 li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~----~~~~~~ 229 (670)
....+...|++++|+..|++....... .+| ..++..+...|...|+++.|...+.+..+.. .. ....++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIF-VKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGG-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 556778899999999999998763111 233 3567888889999999999999998876531 11 123578
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CccHHHH
Q 005905 230 TIAINCCSQTGDWEFACSVYDDMTKKGVI-PD----EVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GI-SVGIISY 299 (670)
Q Consensus 230 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~li~~~~~~g~~~~A~~i~~~m~~~----~~-~~~~~~~ 299 (670)
+.+...|...|++++|...|++..+.... ++ ..++..+..+|...|++++|...+++..+. +. +....++
T Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 88899999999999999999988653111 12 247788889999999999999999988772 33 4456788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhCCC---hhHHHHHHHHHHhCCCCCC-HHHHHH
Q 005905 300 SSLMGACSNAKNWQKALELYEHMKSI----KLKPTVSTMNALITALCDGDQ---LPKTMEVLSDMKSLGLCPN-TITYSI 371 (670)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~-~~t~~~ 371 (670)
..+...|.+.|++++|...|++..+. +.+.....++.+...|...|+ +++|+.++++. +..|+ ...+..
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 344 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHH
Confidence 99999999999999999999987643 111123335667778888888 77788777765 23343 345667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 005905 372 LLVACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 372 ll~a~~~~g~~~~a~~~~~~m~~ 394 (670)
+...|...|++++|..+|++..+
T Consensus 345 la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 77889999999999999988765
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=5e-10 Score=112.49 Aligned_cols=241 Identities=12% Similarity=0.040 Sum_probs=171.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------C
Q 005905 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEV-----HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY------N 221 (670)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~-----~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~------~ 221 (670)
+..+|..+...|...|++++|+.+|+++.... .........+..+...|...|++++|...|+++.+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 46778899999999999999999999998620 001223556778888999999999999999988764 2
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---
Q 005905 222 -IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK------GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ--- 290 (670)
Q Consensus 222 -~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~--- 290 (670)
.+....++..+...|...|++++|...|++..+. +..| ....+..+...+...|++++|.++++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1223567888999999999999999999998764 2222 3456788888999999999999999998764
Q ss_pred ---C-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------CCC-------CHHHHHHHHHHHHhCCChhHHHH
Q 005905 291 ---G-ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK-------LKP-------TVSTMNALITALCDGDQLPKTME 352 (670)
Q Consensus 291 ---~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------~~p-------~~~~~~~li~~~~~~g~~~~A~~ 352 (670)
+ .+....++..+...|...|++++|...|+++.+.. ..+ ....+..+...+...+.+.+|..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 2 22335678889999999999999999999887521 111 11223333444556677777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 353 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 353 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 394 (670)
.+...... .+.+..++..+..+|.+.|++++|..+|++..+
T Consensus 266 ~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77776653 123456788888899999999999999988765
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=1e-09 Score=114.89 Aligned_cols=241 Identities=13% Similarity=-0.023 Sum_probs=185.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----C
Q 005905 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-----HITIGALMKACANAGQVDRAREVYKMIHKY----N 221 (670)
Q Consensus 151 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd-----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----~ 221 (670)
+.....+......+...|++++|+..|++.... .|+ ...+..+...+...|++++|...|++.... +
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 81 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQV----GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG 81 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc
Confidence 455667778888999999999999999999875 333 356778888999999999999999887543 2
Q ss_pred CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCC-------------------
Q 005905 222 IK-GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI-PD----EVFLSALIDFAGHAGK------------------- 276 (670)
Q Consensus 222 ~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~li~~~~~~g~------------------- 276 (670)
.. ....++..+...|...|++++|...+++..+.... ++ ..++..+...|...|+
T Consensus 82 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~ 161 (406)
T 3sf4_A 82 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRD 161 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHH
Confidence 11 12457888899999999999999999987653110 12 3477888889999999
Q ss_pred -hHHHHHHHHHHHHC----CCC-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhCC
Q 005905 277 -VEAAFEILQEAKNQ----GIS-VGIISYSSLMGACSNAKNWQKALELYEHMKSIKL-KPT----VSTMNALITALCDGD 345 (670)
Q Consensus 277 -~~~A~~i~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g 345 (670)
+++|...+....+. +.. ....++..+...|...|++++|...|++..+... .++ ..+|..+...|...|
T Consensus 162 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 241 (406)
T 3sf4_A 162 ALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG 241 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC
Confidence 99999998876542 211 2245788899999999999999999998764210 122 347888999999999
Q ss_pred ChhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 346 QLPKTMEVLSDMKSL----GLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 346 ~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 395 (670)
++++|+..|++.... +..+. ..++..+...+...|++++|...+++..+.
T Consensus 242 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 242 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 999999999987652 11111 457778888899999999999999988753
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=9.7e-10 Score=110.37 Aligned_cols=233 Identities=12% Similarity=0.074 Sum_probs=163.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHh------c---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-----C
Q 005905 126 DCKLYTTLITTCAKSGKVDAMFE------N---------VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV-----H 185 (670)
Q Consensus 126 d~~~~~~li~~~~~~g~~~~~~~------~---------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~-----~ 185 (670)
+..++..+...|...|+++++.. . ......++..+...|...|++++|...|++..... .
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 35678889999999999987554 0 12235678889999999999999999999987631 0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 005905 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKY------NI-KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK--- 255 (670)
Q Consensus 186 ~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--- 255 (670)
.......++..+...|...|++++|...|+++.+. +. +....++..+...|...|++++|..+|+++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 11223567788889999999999999999988764 21 223467888999999999999999999998764
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-------CCc-------cHHHHHHHHHHHHhcCCHHHHHH
Q 005905 256 ---GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQG-------ISV-------GIISYSSLMGACSNAKNWQKALE 317 (670)
Q Consensus 256 ---g~~p-~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~-------~~~-------~~~~~~~li~~~~~~g~~~~A~~ 317 (670)
+..| ...++..+..+|...|++++|...++++.+.. ..+ ....+..+...+...+.+.+|..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 2222 34578888999999999999999999987631 111 12223333444445555666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 318 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
.+....... ..+..+|..+...|.+.|++++|.+.|++..+
T Consensus 266 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666665432 33567788999999999999999999998765
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.16 E-value=8.2e-10 Score=111.89 Aligned_cols=237 Identities=13% Similarity=-0.007 Sum_probs=179.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-C
Q 005905 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-----HITIGALMKACANAGQVDRAREVYKMIHKY----NIK-G 224 (670)
Q Consensus 155 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd-----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~ 224 (670)
..+......+...|++++|+.+|+++... .|+ ...+..+...+...|++++|.+.+++..+. +.. .
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQV----GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 81 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhh----CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHH
Confidence 34555677888999999999999999875 333 356778888999999999999999887543 111 1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC--------------------hHH
Q 005905 225 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV-IPD----EVFLSALIDFAGHAGK--------------------VEA 279 (670)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~li~~~~~~g~--------------------~~~ 279 (670)
...++..+...|...|++++|...+++..+... .++ ..++..+...+...|+ +++
T Consensus 82 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (338)
T 3ro2_A 82 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQA 161 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHH
Confidence 245788899999999999999999998765311 112 3477788888999999 999
Q ss_pred HHHHHHHHHHC----CC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhCCChhH
Q 005905 280 AFEILQEAKNQ----GI-SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL-KPT----VSTMNALITALCDGDQLPK 349 (670)
Q Consensus 280 A~~i~~~m~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~ 349 (670)
|...+.+..+. +. .....++..+...|...|++++|...|++..+... .++ ..++..+...|...|++++
T Consensus 162 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 241 (338)
T 3ro2_A 162 AVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 241 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHH
Confidence 99998876542 21 12245788889999999999999999998764210 112 3478888999999999999
Q ss_pred HHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 350 TMEVLSDMKSL----GLCP-NTITYSILLVACERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 350 A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 395 (670)
|...+++.... +..+ ...++..+...+...|++++|..+++++.+.
T Consensus 242 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 242 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 99999987652 1111 1456777888899999999999999988753
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.16 E-value=5.4e-09 Score=95.77 Aligned_cols=163 Identities=13% Similarity=0.056 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005905 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 234 (670)
Q Consensus 155 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 234 (670)
..|..+...+...|++++|+..|+++... .+.+...+..+...+...|++++|...++.+.+.. +.+..++..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 84 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDA---DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCT---TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34555666677777777777777766543 12345556666666667777777777776666553 445566666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHH
Q 005905 235 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314 (670)
Q Consensus 235 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 314 (670)
.|...|++++|...|+++.+... .+...+..+..++...|++++|...++.+.+.. +.+..++..+...|...|++++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence 66666666666666666655432 244555555555556666666666665555543 3334555555555555555555
Q ss_pred HHHHHHHHH
Q 005905 315 ALELYEHMK 323 (670)
Q Consensus 315 A~~~~~~m~ 323 (670)
|...|++..
T Consensus 163 A~~~~~~~~ 171 (186)
T 3as5_A 163 ALPHFKKAN 171 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.5e-09 Score=116.61 Aligned_cols=194 Identities=10% Similarity=-0.092 Sum_probs=123.5
Q ss_pred HHHHHHHHHhcCCH-HHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005905 157 FNALITACGQSGAV-DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 235 (670)
Q Consensus 157 ~~~li~~~~~~g~~-~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 235 (670)
|..+...|...|++ ++|++.|++..+.. +.+...|..+...|...|++++|.+.|+...+.. |+..++..+..+
T Consensus 105 ~~~lg~~~~~~g~~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg~~ 179 (474)
T 4abn_A 105 LMLKGKALNVTPDYSPEAEVLLSKAVKLE---PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLSMV 179 (474)
T ss_dssp HHHHHHHHTSSSSCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHHHH
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHHHH
Confidence 33444445555555 56666665555431 1224455555566666666666666666655543 334555556666
Q ss_pred HHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CChHHHHHHHHHHHHCCCC---cc
Q 005905 236 CSQT---------GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA--------GKVEAAFEILQEAKNQGIS---VG 295 (670)
Q Consensus 236 ~~~~---------g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~--------g~~~~A~~i~~~m~~~~~~---~~ 295 (670)
|... |++++|...|++..+.... +...|..+..+|... |++++|...|++..+.. + .+
T Consensus 180 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 257 (474)
T 4abn_A 180 LRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKASSN 257 (474)
T ss_dssp HTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGGGC
T ss_pred HHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCcccC
Confidence 6666 6666666666666655432 455666666666666 67777777777777653 2 46
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 005905 296 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358 (670)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 358 (670)
...|..+..+|...|++++|.+.|++..+.. +.+...+..+...+...|++++|++.+.++.
T Consensus 258 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~~ 319 (474)
T 4abn_A 258 PDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGKTK 319 (474)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7778888888888888888888888877654 2356677778888888888888887776653
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.14 E-value=4.1e-09 Score=96.62 Aligned_cols=162 Identities=10% Similarity=0.015 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005905 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272 (670)
Q Consensus 193 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 272 (670)
.+..+...+...|++++|...|+.+.+.. +.+..++..+...|...|++++|...++++.+... .+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 34445555666666666666666555433 33455566666666666666666666666555432 24445555555555
Q ss_pred hcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHH
Q 005905 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 352 (670)
Q Consensus 273 ~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 352 (670)
..|++++|.+.++.+.+.. +.+...+..+..+|...|++++|...|++..+.. +.+...+..+...|...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555555443 3344455555555555555555555555554432 2234455555555555555555555
Q ss_pred HHHHHH
Q 005905 353 VLSDMK 358 (670)
Q Consensus 353 l~~~m~ 358 (670)
.+++..
T Consensus 166 ~~~~~~ 171 (186)
T 3as5_A 166 HFKKAN 171 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.08 E-value=8.5e-09 Score=109.96 Aligned_cols=299 Identities=13% Similarity=0.022 Sum_probs=197.5
Q ss_pred hcCCH---HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhh-----hhHHHHHHHhhhCC-CCCHHHHHHHHHHHHcCCC
Q 005905 37 RQGRI---SECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ-----KAIKEAFRFFKLVP-NPTLSTFNMLMSVCASSKD 107 (670)
Q Consensus 37 ~~g~~---~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~-~~~~~~y~~li~~~~~~g~ 107 (670)
..|+. ++|++.|++..+. .|... ..+..++... ++.++|+.+|++.. ..+...+..|...|...+.
T Consensus 47 ~~g~~~d~~~A~~~~~~A~~~--~~~A~---~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~ 121 (452)
T 3e4b_A 47 GTRDPAQIKQAEATYRAAADT--SPRAQ---ARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPH 121 (452)
T ss_dssp --------------------------CH---HHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGG
T ss_pred ccCCCCCHHHHHHHHHHHHhC--CHHHH---HHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCC
Confidence 45666 8999999998865 23222 2233322222 58899999998653 2233367777777776654
Q ss_pred HH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHh--------cCCCCHHHHHHHHHHHHhcC---CHHHH
Q 005905 108 SE---GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSG---AVDRA 173 (670)
Q Consensus 108 ~~---~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~--------~~~~~~~~~~~li~~~~~~g---~~~~A 173 (670)
.+ .+.+.+......|. ......|...|...+.++...+ ....+...+..|...|...| +.++|
T Consensus 122 ~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A 198 (452)
T 3e4b_A 122 SFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAEL 198 (452)
T ss_dssp GCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHH
Confidence 43 35555555555553 4456667777777775543222 12334448889999999999 99999
Q ss_pred HHHHHHHhhCCCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCCHHHHH
Q 005905 174 FDVLAEMNAEVHPVDPDHITIGALMKACANA----GQVDRAREVYKMIHKYNIKGTPEVYTIAINC-C--SQTGDWEFAC 246 (670)
Q Consensus 174 ~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~ 246 (670)
++.|++....+ .++...+..+...|... +++++|.+.|+... .| ++..+..+... | ...+++++|.
T Consensus 199 ~~~~~~aa~~g---~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~ 271 (452)
T 3e4b_A 199 LKQMEAGVSRG---TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMM 271 (452)
T ss_dssp HHHHHHHHHTT---CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 99999998863 55666556677777554 79999999999887 33 45677777776 4 5689999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh----cCCHHHHHH
Q 005905 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAG-----KVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALE 317 (670)
Q Consensus 247 ~l~~~m~~~g~~p~~~t~~~li~~~~~~g-----~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~ 317 (670)
..|++..+.| +...+..|-..|. .| ++++|...|+... .| +...+..|..+|.. ..++++|..
T Consensus 272 ~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~ 343 (452)
T 3e4b_A 272 KYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALD 343 (452)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHH
Confidence 9999999887 5667777777776 55 9999999999887 43 56777888888877 449999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----CCChhHHHHHHHHHHhCC
Q 005905 318 LYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKSLG 361 (670)
Q Consensus 318 ~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g 361 (670)
.|++..+.| +......|...|.. ..+.++|...|+...+.|
T Consensus 344 ~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 344 HLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 999998866 34455666666664 457888888888877766
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.08 E-value=6.8e-08 Score=99.98 Aligned_cols=275 Identities=11% Similarity=-0.022 Sum_probs=184.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005905 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFD 175 (670)
Q Consensus 96 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 175 (670)
......+...|++++|...+++.+......+.... ..+++.+...|...|++++|..
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----------------------~~~~~~l~~~~~~~g~~~~A~~ 74 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSR-----------------------IVATSVLGEVLHCKGELTRSLA 74 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHH-----------------------HHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHH-----------------------HHHHHHHHHHHHhcCcHHHHHH
Confidence 34445666789999999999888775322222111 1234555666777888888888
Q ss_pred HHHHHhhCCCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCCHHH
Q 005905 176 VLAEMNAEVHPVDPDH----ITIGALMKACANAGQVDRAREVYKMIHKY----NIK--G-TPEVYTIAINCCSQTGDWEF 244 (670)
Q Consensus 176 l~~~m~~~~~~~~pd~----~t~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~ 244 (670)
.+++....... .++. .++..+...+...|++++|...+++..+. +.. | ...++..+...|...|++++
T Consensus 75 ~~~~al~~~~~-~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 153 (373)
T 1hz4_A 75 LMQQTEQMARQ-HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDE 153 (373)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHH
Confidence 88876542100 1122 23556677788899999999999877553 221 2 23456677888899999999
Q ss_pred HHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc--cHHHHH----HHHHHHHhcCCHHH
Q 005905 245 ACSVYDDMTKKGVI----PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV--GIISYS----SLMGACSNAKNWQK 314 (670)
Q Consensus 245 A~~l~~~m~~~g~~----p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~--~~~~~~----~li~~~~~~g~~~~ 314 (670)
|...+++....... ....++..+...+...|++++|...+++.......+ ...... ..+..+...|++++
T Consensus 154 A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 233 (373)
T 1hz4_A 154 AEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAA 233 (373)
T ss_dssp HHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHH
Confidence 99999887654321 123567778888889999999999999876531111 111111 23445778999999
Q ss_pred HHHHHHHHHhCCCCC---CHHHHHHHHHHHHhCCChhHHHHHHHHHHh----CCCCCCHH-HHHHHHHHHHhcCCHHHHH
Q 005905 315 ALELYEHMKSIKLKP---TVSTMNALITALCDGDQLPKTMEVLSDMKS----LGLCPNTI-TYSILLVACERKDDVEVGL 386 (670)
Q Consensus 315 A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~~-t~~~ll~a~~~~g~~~~a~ 386 (670)
|...+++.......+ ....+..+...+...|++++|...+++... .|..++.. .+..+..++...|+.++|.
T Consensus 234 A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 313 (373)
T 1hz4_A 234 AANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQ 313 (373)
T ss_dssp HHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHH
Confidence 999998876543221 133567778889999999999999988754 23222332 5556667788999999999
Q ss_pred HHHHHHHH
Q 005905 387 MLLSQAKE 394 (670)
Q Consensus 387 ~~~~~m~~ 394 (670)
..+++...
T Consensus 314 ~~l~~al~ 321 (373)
T 1hz4_A 314 RVLLDALK 321 (373)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987765
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=7.6e-09 Score=115.92 Aligned_cols=165 Identities=13% Similarity=0.055 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005905 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270 (670)
Q Consensus 191 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 270 (670)
...|+.+...|.+.|++++|++.|++..+.. +.+..+|+.+..+|.+.|++++|+..|++.++.... +...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4456666666777777777777777666654 445666777777777777777777777776665433 45666677777
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHH
Q 005905 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 350 (670)
Q Consensus 271 ~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 350 (670)
|...|++++|.+.|++..+.. +-+...|+.+..+|.+.|++++|.+.|++..+... -+...|..+..+|...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhHHHhcccHHHH
Confidence 777777777777777766654 34566777777777777777777777777766542 2566777777777777777777
Q ss_pred HHHHHHHHh
Q 005905 351 MEVLSDMKS 359 (670)
Q Consensus 351 ~~l~~~m~~ 359 (670)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.5e-08 Score=102.51 Aligned_cols=307 Identities=10% Similarity=0.030 Sum_probs=168.9
Q ss_pred chhhHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCchHHH-HHHHHHH--HhhhhhHH------------HHHHHhhhC
Q 005905 25 VSEQLHSYNRLIRQGRISECIDLLEDMERKG--LLDMDKVY-HARFFNV--CKSQKAIK------------EAFRFFKLV 87 (670)
Q Consensus 25 ~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g--~~~~~~~~-~~~l~~~--~~~~~~~~------------~A~~~~~~~ 87 (670)
+...+.-|-..+..+++++|.++++++...- +..+.... +..++.. ..-.+.+. ++++-.+..
T Consensus 12 v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~ 91 (378)
T 3q15_A 12 VGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETP 91 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhcc
Confidence 4445555777789999999999999986532 11122211 1111111 11111111 222222222
Q ss_pred CCC-C-HH---HHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHH
Q 005905 88 PNP-T-LS---TFNMLMSVCASSKDSEGAFQVLRLVQEAGL-KADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALI 161 (670)
Q Consensus 88 ~~~-~-~~---~y~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li 161 (670)
..+ + .. .|......+...|++++|+..|++..+.-. .+|... ...++..+.
T Consensus 92 ~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----------------------~a~~~~~lg 148 (378)
T 3q15_A 92 QKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIE-----------------------KAEFHFKVA 148 (378)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHH-----------------------HHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHH-----------------------HHHHHHHHH
Confidence 211 1 11 223344566788999999999988875421 122110 123456677
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCC---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHH
Q 005905 162 TACGQSGAVDRAFDVLAEMNAEVHPV---DP-DHITIGALMKACANAGQVDRAREVYKMIHKY----NIK-GTPEVYTIA 232 (670)
Q Consensus 162 ~~~~~~g~~~~A~~l~~~m~~~~~~~---~p-d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~~~l 232 (670)
..|...|++++|+..+.+........ .+ ...++..+...|...|++++|.+.|.+..+. +.+ ....+++.+
T Consensus 149 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 228 (378)
T 3q15_A 149 EAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNI 228 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77788888888888877765421000 11 1346667777888888888888888776552 111 112456667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC----CCccHHHHHHHH
Q 005905 233 INCCSQTGDWEFACSVYDDMTK-----KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG----ISVGIISYSSLM 303 (670)
Q Consensus 233 i~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~----~~~~~~~~~~li 303 (670)
..+|...|++++|...|++..+ .... ...++..+..+|.+.|++++|...+++..+.. -+.....++.+.
T Consensus 229 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~ 307 (378)
T 3q15_A 229 ANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQ 307 (378)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777888887777777665 3222 24556666666666777777776666665431 112233445555
Q ss_pred HHHHhcCC---HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 005905 304 GACSNAKN---WQKALELYEHMKSIKLKP-TVSTMNALITALCDGDQLPKTMEVLSDMK 358 (670)
Q Consensus 304 ~~~~~~g~---~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 358 (670)
..|...++ +.+|...+++.. ..| ....+..+...|...|++++|...|++..
T Consensus 308 ~ly~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 308 AVYKETVDERKIHDLLSYFEKKN---LHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHSSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHhCC---ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555565 555555555421 111 12234445555666666666666665543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.06 E-value=6.1e-08 Score=100.72 Aligned_cols=231 Identities=11% Similarity=-0.075 Sum_probs=171.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CC----CCHHH
Q 005905 159 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITIGALMKACANAGQVDRAREVYKMIHKYN--IK----GTPEV 228 (670)
Q Consensus 159 ~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~----~~~~~ 228 (670)
.....+...|++++|+..|++....... .+| ..++..+...|...|+++.|...+.+..+.. .. ....+
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPF-VSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGG-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhh-CCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 3455677899999999999998764111 233 3467778889999999999999998876531 11 12457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCccHHH
Q 005905 229 YTIAINCCSQTGDWEFACSVYDDMTKK----GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKN-----QGISVGIIS 298 (670)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~A~~i~~~m~~-----~~~~~~~~~ 298 (670)
++.+..+|...|++++|.+.|++..+. +..+ ...++..+..+|...|++++|...+.+..+ .. +....+
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~ 263 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKV 263 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHH
Confidence 888999999999999999999887653 1111 234677888899999999999999999877 43 334778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhCCC---hhHHHHHHHHHHhCCCCCC-HHHHH
Q 005905 299 YSSLMGACSNAKNWQKALELYEHMKSIK----LKPTVSTMNALITALCDGDQ---LPKTMEVLSDMKSLGLCPN-TITYS 370 (670)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~-~~t~~ 370 (670)
+..+...|.+.|++++|...|++..+.. .+.....++.+...|...++ +.+|+..+++. +..|+ ...+.
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~ 340 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACAR 340 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHH
Confidence 8899999999999999999999887532 12224456666667777788 77788777762 23333 34555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 371 ILLVACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 371 ~ll~a~~~~g~~~~a~~~~~~m~~ 394 (670)
.+...|...|++++|...|++..+
T Consensus 341 ~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 341 SAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 677789999999999999987764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.2e-08 Score=114.26 Aligned_cols=165 Identities=15% Similarity=0.114 Sum_probs=148.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 005905 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231 (670)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 231 (670)
+..+|+.|...|.+.|++++|++.|++..+. .|+ ...|..+..+|.+.|++++|++.|++..+.+ +.+..+|+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l----~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV----FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 4678999999999999999999999999874 454 6789999999999999999999999999876 567899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC
Q 005905 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311 (670)
Q Consensus 232 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~ 311 (670)
+..+|.+.|++++|++.|++.++.... +...|..+..+|...|++++|.+.|++..+.. +-+...+..+..+|...|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhccc
Confidence 999999999999999999999887654 67899999999999999999999999999875 4567889999999999999
Q ss_pred HHHHHHHHHHHHh
Q 005905 312 WQKALELYEHMKS 324 (670)
Q Consensus 312 ~~~A~~~~~~m~~ 324 (670)
+++|.+.|++..+
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888764
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.01 E-value=1.4e-06 Score=96.47 Aligned_cols=364 Identities=8% Similarity=0.004 Sum_probs=194.7
Q ss_pred hHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhh---HHHHHHHhhhCC--C---CCHHHH
Q 005905 28 QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA---IKEAFRFFKLVP--N---PTLSTF 95 (670)
Q Consensus 28 ~~~~~~~l~----~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~--~---~~~~~y 95 (670)
+...|..|+ +.+.++.+..+|+++...- |....+-...+..-.+.+. ++.+..+|++.. . |++..|
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF--PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 344555555 5789999999999999875 6666555556666677788 999999998753 2 888888
Q ss_pred HHHHHHHHcCCCH--------HHHHHHHHHHHH-cCC-CCC-HHHHHHHHHHHHhc---------CCHHH---HHh---c
Q 005905 96 NMLMSVCASSKDS--------EGAFQVLRLVQE-AGL-KAD-CKLYTTLITTCAKS---------GKVDA---MFE---N 149 (670)
Q Consensus 96 ~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~pd-~~~~~~li~~~~~~---------g~~~~---~~~---~ 149 (670)
..-+....+.++. +...++|+..+. .|. .++ ...|...+...... ++++. +++ .
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 8888766554443 334578877665 355 454 45676666544321 12222 222 1
Q ss_pred CCC-C-HHHHH---HHHHHHH----------hcCCHHHHHHHHHHHhhCCCCCC---------------C-----C---H
Q 005905 150 VKP-D-RVVFN---ALITACG----------QSGAVDRAFDVLAEMNAEVHPVD---------------P-----D---H 191 (670)
Q Consensus 150 ~~~-~-~~~~~---~li~~~~----------~~g~~~~A~~l~~~m~~~~~~~~---------------p-----d---~ 191 (670)
++. + ..+|. ..-..+. ...+++.|...+.++.....++. | + .
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 111 1 12222 1111110 01123334444443221100110 1 1 1
Q ss_pred HHHHHHHHHHHHcC-------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHH
Q 005905 192 ITIGALMKACANAG-------QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC-SVYDDMTKKGVIPDEVF 263 (670)
Q Consensus 192 ~t~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~l~~~m~~~g~~p~~~t 263 (670)
..|...+.---..+ ..+.+..+|+++.... +.+...|-..+..+.+.|+.++|. .+|++..... +.+...
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~L 380 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHH
Confidence 23444443322221 1234455666666543 445666666666666666666665 7776666532 234455
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCC---------Cc------------cHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005905 264 LSALIDFAGHAGKVEAAFEILQEAKNQGI---------SV------------GIISYSSLMGACSNAKNWQKALELYEHM 322 (670)
Q Consensus 264 ~~~li~~~~~~g~~~~A~~i~~~m~~~~~---------~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m 322 (670)
|...+....+.|+++.|.++|+.+.+... .| ...+|...+....+.|+.+.|+.+|...
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55666666666777777777766654310 02 1235666666666667777777777766
Q ss_pred HhCCCCCCHHHHHHHHHHHHhC-CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005905 323 KSIKLKPTVSTMNALITALCDG-DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396 (670)
Q Consensus 323 ~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g 396 (670)
.+.........|-..+..-.+. ++.+.|..+|+...+. ++-+...+...+......|+.+.|..+|++.....
T Consensus 461 ~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 461 RRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp HHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred HHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 6541111222232222222233 3467777777766654 22344444455555566677777777777666543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.01 E-value=3.9e-08 Score=94.01 Aligned_cols=100 Identities=12% Similarity=0.022 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005905 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 232 (670)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 232 (670)
|...|......|...|++++|+..|++..... -.++...+..+..++...|++++|.+.|+...+.+ +.+..+|..+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT--NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 34445555555555555555555555554431 01344444444555555555555555555555433 2334445555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 005905 233 INCCSQTGDWEFACSVYDDMTKK 255 (670)
Q Consensus 233 i~~~~~~g~~~~A~~l~~~m~~~ 255 (670)
..+|...|++++|...|++..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~ 105 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKA 105 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHH
Confidence 55555555555555555555443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.99 E-value=6.8e-08 Score=92.33 Aligned_cols=195 Identities=16% Similarity=0.075 Sum_probs=135.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005905 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268 (670)
Q Consensus 189 pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li 268 (670)
.|...+......+...|++++|...|+...+...+++..++..+..+|...|++++|+..|++..+.... +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3456777778888888888888888888887763367777777888888888888888888888876543 556777788
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCccH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHH
Q 005905 269 DFAGHAGKVEAAFEILQEAKNQGISVGI-------ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT---VSTMNALI 338 (670)
Q Consensus 269 ~~~~~~g~~~~A~~i~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li 338 (670)
.+|...|++++|...+++..+.. +.+. .+|..+...+...|++++|...|++..+. .|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 88888888888888888887754 2334 45777777778888888888888887765 343 45666666
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 339 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 339 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 395 (670)
..|... +..+++++...+ ..+...|.... ....+.+++|...|++..+.
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 666543 334455555432 23344444333 23345677788888777764
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.97 E-value=4.8e-09 Score=103.42 Aligned_cols=229 Identities=11% Similarity=-0.017 Sum_probs=154.6
Q ss_pred hcCCHHHHHHHHHHHhhC-----CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CC-CCCHHHHHHHH
Q 005905 166 QSGAVDRAFDVLAEMNAE-----VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY------NI-KGTPEVYTIAI 233 (670)
Q Consensus 166 ~~g~~~~A~~l~~~m~~~-----~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~------~~-~~~~~~~~~li 233 (670)
..|++++|+.+|++.... +...+....++..+...|...|++++|...|+++.+. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 445555555555554431 0011223567788889999999999999999988764 21 22356788899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------C-CCccHHHH
Q 005905 234 NCCSQTGDWEFACSVYDDMTKK------G-VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ------G-ISVGIISY 299 (670)
Q Consensus 234 ~~~~~~g~~~~A~~l~~~m~~~------g-~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~------~-~~~~~~~~ 299 (670)
..|...|++++|...|.+..+. . .+....++..+...|...|++++|...++++.+. + .+....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999998764 1 1223567888889999999999999999998765 1 12345688
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC-------CC-CCCHHHHHHHHHHHHhCCChhHHHHHHHHHH---hCC-CCC-CH
Q 005905 300 SSLMGACSNAKNWQKALELYEHMKSI-------KL-KPTVSTMNALITALCDGDQLPKTMEVLSDMK---SLG-LCP-NT 366 (670)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~m~~~-------~~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~---~~g-~~p-~~ 366 (670)
..+...|...|++++|...|++..+. .. ......|..+...+...+....+..+..... ..+ ..| +.
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN 252 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 89999999999999999999988753 11 1223344444444444444333333221111 111 112 34
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 367 ITYSILLVACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 367 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 394 (670)
.++..+..+|...|++++|..+|++..+
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5677788889999999999999988765
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.95 E-value=8.7e-09 Score=101.56 Aligned_cols=206 Identities=12% Similarity=0.037 Sum_probs=145.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------C
Q 005905 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEV-----HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY------N 221 (670)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~-----~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~------~ 221 (670)
...+|..+...|...|++++|+..|++..... ........++..+...|...|++++|.+.|.++.+. .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 46678899999999999999999999987631 011223557888899999999999999999988764 1
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---
Q 005905 222 -IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK------GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ--- 290 (670)
Q Consensus 222 -~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~--- 290 (670)
.+....++..+...|...|++++|...|++..+. +..| ...++..+..+|...|++++|...++++.+.
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1233567888999999999999999999998765 1122 3467888999999999999999999998763
Q ss_pred ----CCC-ccHHHHHHHHHHHHhcCC------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 291 ----GIS-VGIISYSSLMGACSNAKN------WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 291 ----~~~-~~~~~~~~li~~~~~~g~------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
... .....+..+...+...+. +..+...++.... .......++..+...|...|++++|..+|++..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111 122333333333333332 3333333332221 1122356788899999999999999999998765
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.90 E-value=2.8e-07 Score=95.34 Aligned_cols=235 Identities=9% Similarity=-0.017 Sum_probs=168.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCH----HH
Q 005905 158 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI----TIGALMKACANAGQVDRAREVYKMIHKYNI-KGTP----EV 228 (670)
Q Consensus 158 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~----t~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~----~~ 228 (670)
......+...|++++|...+++..... + ..+.. .+..+...+...|++++|...+++...... ..+. .+
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~-~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEEL-P-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC-C-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcC-C-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 344456778999999999999987752 1 11222 456667788899999999999988765311 1122 33
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC----ccHH
Q 005905 229 YTIAINCCSQTGDWEFACSVYDDMTKK----GVI--P-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS----VGII 297 (670)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~--p-~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~----~~~~ 297 (670)
++.+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+.+..+.... ....
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 567788899999999999999988653 222 2 2345666788899999999999999998764321 1346
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHH-----HHHHHHHhCCChhHHHHHHHHHHhCCCCC---CHHH
Q 005905 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPT-VSTMN-----ALITALCDGDQLPKTMEVLSDMKSLGLCP---NTIT 368 (670)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~-----~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t 368 (670)
++..+...+...|++++|...+++.......++ ...|. ..+..+...|++++|...+++.......+ ....
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 788888999999999999999998764311111 11222 23344779999999999999877633211 1335
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 369 YSILLVACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 369 ~~~ll~a~~~~g~~~~a~~~~~~m~~ 394 (670)
+..+...+...|++++|...++....
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNE 281 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66777889999999999999988765
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.88 E-value=6.3e-07 Score=88.33 Aligned_cols=183 Identities=16% Similarity=0.117 Sum_probs=116.0
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005905 173 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI-KGTPEVYTIAINCCSQTGDWEFACSVYDD 251 (670)
Q Consensus 173 A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 251 (670)
|+..|++....+ .++..++..+..++...|++++|++++.+....+. ..+...+..++..|.+.|+.+.|.+.+++
T Consensus 85 a~~~l~~l~~~~---~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 NIEELENLLKDK---QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp CCHHHHHTTTTS---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcC---CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 677777776542 45555666777778888888888888877766542 23566777788888888888888888888
Q ss_pred HHHCCCCC-----CHHHHHHHHHHHH--hcC--ChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005905 252 MTKKGVIP-----DEVFLSALIDFAG--HAG--KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322 (670)
Q Consensus 252 m~~~g~~p-----~~~t~~~li~~~~--~~g--~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 322 (670)
|.+. .| +..+...+..++. ..| +..+|..+|+++.+.. |+......++.++.+.|++++|.+.++.+
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8765 34 2455555555532 223 7778888888876543 33233333444677778888888887765
Q ss_pred HhCC---------CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH
Q 005905 323 KSIK---------LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366 (670)
Q Consensus 323 ~~~~---------~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 366 (670)
.+.. -+.|..+.-.+|......|+ +|.+++.++.+. .|+.
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~h 286 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEH 286 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCC
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCC
Confidence 5320 02255555445555555565 677777777763 4543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.87 E-value=1.5e-07 Score=80.67 Aligned_cols=20 Identities=15% Similarity=0.155 Sum_probs=7.4
Q ss_pred HHHHHHhCCChhHHHHHHHH
Q 005905 337 LITALCDGDQLPKTMEVLSD 356 (670)
Q Consensus 337 li~~~~~~g~~~~A~~l~~~ 356 (670)
+...|...|++++|...|++
T Consensus 109 la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 109 LGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp HHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHccHHHHHHHHHH
Confidence 33333333333333333333
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.86 E-value=1.4e-07 Score=80.86 Aligned_cols=128 Identities=19% Similarity=0.174 Sum_probs=67.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005905 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273 (670)
Q Consensus 194 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~ 273 (670)
|..+...+...|++++|..+|+.+.+.. +.+..++..+...+...|++++|..+|+++.+.+.. +...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHH
Confidence 4444555555555555555555555443 334455555555555555555555555555544322 34445555555555
Q ss_pred cCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005905 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324 (670)
Q Consensus 274 ~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 324 (670)
.|++++|.+.++.+.+.. +.+..++..+...|.+.|++++|...|+++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 555555555555555443 23344455555555555555555555555443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.84 E-value=4.1e-05 Score=84.71 Aligned_cols=363 Identities=13% Similarity=0.078 Sum_probs=239.7
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCC---HHHHHHH
Q 005905 41 ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKD---SEGAFQV 114 (670)
Q Consensus 41 ~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~g~---~~~A~~~ 114 (670)
..+-+..|++.+..+ |.+......++..+.+.+.++.+..+|+.+. +.....|..-+..-.+.++ ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 445666778887777 7777777778888888889999999988763 4567788888888888888 9999999
Q ss_pred HHHHHHcC-CCCCHHHHHHHHHHHHhcCCH-----------HHHHh------cC-CC-CHHHHHHHHHHHH---------
Q 005905 115 LRLVQEAG-LKADCKLYTTLITTCAKSGKV-----------DAMFE------NV-KP-DRVVFNALITACG--------- 165 (670)
Q Consensus 115 ~~~m~~~g-~~pd~~~~~~li~~~~~~g~~-----------~~~~~------~~-~~-~~~~~~~li~~~~--------- 165 (670)
|++.+... ..|++..|..-+....+.++. ..+|+ +. .+ +...|...+.-..
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 99998863 148888888777665554432 13444 34 44 4578888876543
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCCCHHHHHH---HHHHH----------HHcCCHHHHHHHHHHHHHc--CC----C---
Q 005905 166 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGA---LMKAC----------ANAGQVDRAREVYKMIHKY--NI----K--- 223 (670)
Q Consensus 166 ~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~---li~~~----------~~~g~~~~A~~~~~~m~~~--~~----~--- 223 (670)
..++++.+..+|++.... +...-..+|.. +-..+ -...+++.|...+.++... ++ +
T Consensus 206 eq~~~~~~R~iy~raL~i--P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~ 283 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQ--PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITL 283 (679)
T ss_dssp HHHHHHHHHHHHHHHTTS--CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSS
T ss_pred HHhHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccc
Confidence 345678899999999852 22111223322 21111 0112345566666554321 11 1
Q ss_pred --------C-----C---HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 005905 224 --------G-----T---PEVYTIAINCCSQTG-------DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 280 (670)
Q Consensus 224 --------~-----~---~~~~~~li~~~~~~g-------~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 280 (670)
| + ...|...+..--..+ ..+.+..+|++.+..-.. +...|...+..+...|+.++|
T Consensus 284 ~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~-~~~lW~~ya~~~~~~~~~~~a 362 (679)
T 4e6h_A 284 NQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCF-APEIWFNMANYQGEKNTDSTV 362 (679)
T ss_dssp TTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHSCCTTH
T ss_pred ccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCcHHHH
Confidence 1 0 245666665544333 134456778888776433 778888888888888999999
Q ss_pred H-HHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------CCCC------------HHHHHHHH
Q 005905 281 F-EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK---------LKPT------------VSTMNALI 338 (670)
Q Consensus 281 ~-~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---------~~p~------------~~~~~~li 338 (670)
. ++|+..... ++.+...|-..+....+.|+++.|.++|+.+.+.. ..|+ ...|...+
T Consensus 363 ~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~ 441 (679)
T 4e6h_A 363 ITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYM 441 (679)
T ss_dssp HHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHH
Confidence 6 999999875 35677788888999999999999999999887531 0132 34688888
Q ss_pred HHHHhCCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005905 339 TALCDGDQLPKTMEVLSDMKSL-GLCPNTITYSILLVACER-KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 411 (670)
Q Consensus 339 ~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 411 (670)
....+.|..+.|..+|.+..+. +. +....|......-.+ .++.+.|.++|+...+. ..-+...+...++..
T Consensus 442 ~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe 514 (679)
T 4e6h_A 442 NTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFL 514 (679)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHH
Confidence 8888889999999999999875 21 122333322222223 35589999999988875 223444444555543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=1.2e-07 Score=94.58 Aligned_cols=129 Identities=9% Similarity=0.003 Sum_probs=71.5
Q ss_pred HHHHHHHHHHhc-CChHHHHHHHHHHHHCCC----Cc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-----
Q 005905 263 FLSALIDFAGHA-GKVEAAFEILQEAKNQGI----SV-GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV----- 331 (670)
Q Consensus 263 t~~~li~~~~~~-g~~~~A~~i~~~m~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----- 331 (670)
++..+..+|... |++++|...|++..+... .. ...+++.+...|.+.|++++|...|++..+.......
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 455555556664 666666666665544210 00 0345666677777777777777777776654322211
Q ss_pred -HHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH------HHHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 005905 332 -STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT------ITYSILLVACE--RKDDVEVGLMLLSQAK 393 (670)
Q Consensus 332 -~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~------~t~~~ll~a~~--~~g~~~~a~~~~~~m~ 393 (670)
..|..+..+|...|++++|+..|++..+ +.|+. ..+..++.+|. ..+++++|+..|+.+.
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 1456666667777777777777777654 23321 12334455553 3456777777765443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=1.1e-07 Score=95.05 Aligned_cols=160 Identities=11% Similarity=0.023 Sum_probs=103.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCc-cHHHHHHHHH
Q 005905 235 CCSQTGDWEFACSVYDDMTKK----GVIPD-EVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GISV-GIISYSSLMG 304 (670)
Q Consensus 235 ~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~li~~~~~~g~~~~A~~i~~~m~~~----~~~~-~~~~~~~li~ 304 (670)
.|...|++++|...|.+..+. |-.++ ..+|..+..+|...|++++|...+++..+. |-.. -..+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345556666666666555432 21111 345666666666666666666666655432 2111 1356778888
Q ss_pred HHHhc-CCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH------HHHHHH
Q 005905 305 ACSNA-KNWQKALELYEHMKSIKLK-PT----VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT------ITYSIL 372 (670)
Q Consensus 305 ~~~~~-g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~------~t~~~l 372 (670)
+|... |++++|...|++..+.... .+ ..+|+.+...|.+.|++++|+..|++..+....... ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88886 9999999999887653111 01 356888888999999999999999998874322211 156667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 005905 373 LVACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 373 l~a~~~~g~~~~a~~~~~~m~~ 394 (670)
..++...|++++|...|++..+
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 7778888999999999987765
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.75 E-value=3.7e-07 Score=85.98 Aligned_cols=74 Identities=11% Similarity=0.053 Sum_probs=33.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005905 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342 (670)
Q Consensus 267 li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 342 (670)
+..+|.+.|++++|...++...+.. +-+...+..+..+|...|++++|...|++..+.. +.+..+|..+...|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 3344444444444444444444433 2334444445555555555555555555544433 123444444444443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.72 E-value=7.1e-07 Score=84.00 Aligned_cols=185 Identities=12% Similarity=0.032 Sum_probs=86.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005905 157 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH-ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 235 (670)
Q Consensus 157 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~-~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 235 (670)
+-.....+...|++++|+..|++.... .|+. ..|.. ..... ........++.+..+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~-----~~~~~--------------~~~~~~~~~~~lg~~ 63 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIAL----NIDRTEMYYW-----TNVDK--------------NSEISSKLATELALA 63 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH----CHHHHHHHHH-----HHSCT--------------TSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCChHHHHH-----hhhcc--------------hhhhhHHHHHHHHHH
Confidence 334445667778888888888887763 4442 22322 00000 000001112224555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC--HH
Q 005905 236 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN--WQ 313 (670)
Q Consensus 236 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~ 313 (670)
|.+.|++++|...|++.++.... +...+..+..++...|++++|...|+++.+.. +.+..++..+...|...|. .+
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~ 141 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKK 141 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHH
Confidence 55555555555555555554332 44455555555555555555555555555543 3344455555555444332 23
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHH
Q 005905 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370 (670)
Q Consensus 314 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 370 (670)
.+...|..... ..|....+..+..++...|++++|+..|++..+ +.|+.....
T Consensus 142 ~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~ 194 (208)
T 3urz_A 142 KLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQK 194 (208)
T ss_dssp HHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHH
T ss_pred HHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHH
Confidence 33444444331 111122223333444445566666666666554 345544433
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.72 E-value=3.4e-07 Score=89.47 Aligned_cols=186 Identities=11% Similarity=0.021 Sum_probs=121.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCC
Q 005905 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITIGALMKACANAGQVDRAREVYKMIHKYNI--KGT 225 (670)
Q Consensus 152 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~ 225 (670)
.+...+-.+...+.+.|++++|+..|+++... .|+ ...+..+..+|.+.|++++|...|+...+... +..
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY----GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG----CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 35666777778888899999999999998875 333 45677788888899999999999998887642 122
Q ss_pred HHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHH
Q 005905 226 PEVYTIAINCCSQ--------TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 297 (670)
Q Consensus 226 ~~~~~~li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~ 297 (670)
..++..+..++.. .|++++|...|++..+.... +......+. .+..+... -..
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~--------------~~~~~~~~----~~~ 149 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQ--------------KIRELRAK----LAR 149 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHH--------------HHHHHHHH----HHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHH--------------HHHHHHHH----HHH
Confidence 4567777888888 88999999999988876432 111221110 00000000 011
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhC----------CChhHHHHHHHHHHhC
Q 005905 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKP--TVSTMNALITALCDG----------DQLPKTMEVLSDMKSL 360 (670)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~----------g~~~~A~~l~~~m~~~ 360 (670)
.+..+...|.+.|++++|...|+++.+..+.. ....+..+..+|... |++++|+..|++..+.
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 24456667777777777777777776542211 234566666666654 6777777777777663
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.1e-06 Score=85.74 Aligned_cols=188 Identities=11% Similarity=0.021 Sum_probs=118.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC-HHHH
Q 005905 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT---PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI-PD-EVFL 264 (670)
Q Consensus 190 d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~-~~t~ 264 (670)
+...+......+.+.|++++|...|+.+.+.. +.+ ..++..+..+|.+.|++++|...|++..+.... |. ...+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 34555566667777777777777777777654 333 566677777777777777777777777765321 11 3345
Q ss_pred HHHHHHHHh--------cCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 005905 265 SALIDFAGH--------AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 336 (670)
Q Consensus 265 ~~li~~~~~--------~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 336 (670)
..+..++.. .|++++|...|+.+.+... .+.....++ ..+..+.. .....+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~a~--------------~~~~~~~~----~~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP-NHELVDDAT--------------QKIRELRA----KLARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT-TCTTHHHHH--------------HHHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc-CchhHHHHH--------------HHHHHHHH----HHHHHHHH
Confidence 555556666 6677777777776665431 111111111 11111110 00112456
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCH
Q 005905 337 LITALCDGDQLPKTMEVLSDMKSLGLCPN----TITYSILLVACERK----------DDVEVGLMLLSQAKEDGVIPNL 401 (670)
Q Consensus 337 li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~----------g~~~~a~~~~~~m~~~g~~p~~ 401 (670)
+...|...|++++|+..|++..+. .|+ ...+..+..++... |++++|...|+.+.+.. |+.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~ 228 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF--PDS 228 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC--TTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC--CCC
Confidence 788899999999999999999874 343 34666777777765 89999999999988753 544
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.8e-07 Score=105.04 Aligned_cols=174 Identities=13% Similarity=0.016 Sum_probs=123.7
Q ss_pred HhcCCHHHHHHHHHHHh--------hCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005905 165 GQSGAVDRAFDVLAEMN--------AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 236 (670)
Q Consensus 165 ~~~g~~~~A~~l~~~m~--------~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 236 (670)
...|++++|++.|++.. .. -+.+...+..+..++...|++++|.+.|+++.+.+ +.+...|..+..+|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~---~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD---FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C---CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc---cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHH
Confidence 67888888988888887 32 12344567777788888888888888888887765 55677888888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHH
Q 005905 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316 (670)
Q Consensus 237 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 316 (670)
.+.|++++|...|++..+.... +...+..+..+|.+.|++++ .+.|++..+.+ +.+...|..+..+|.+.|++++|.
T Consensus 478 ~~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888888888776543 55667777777778888877 77777777665 445667777777788888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 005905 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQ 346 (670)
Q Consensus 317 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 346 (670)
+.|++..+... -+...|..+..++...++
T Consensus 555 ~~~~~al~l~P-~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPPTSR-HFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCTTST-THHHHHHHHHHHTC----
T ss_pred HHHHhhcccCc-ccHHHHHHHHHHHHccCC
Confidence 77777665431 134556666666655444
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.65 E-value=3.6e-07 Score=83.43 Aligned_cols=161 Identities=12% Similarity=0.091 Sum_probs=96.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HH
Q 005905 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF-AG 272 (670)
Q Consensus 194 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~-~~ 272 (670)
+......+...|++++|...|+...+.. +.+...+..+..+|.+.|++++|...|++...... +...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHH
Confidence 3344556666777777777776665543 44566677777777777777777777776655432 33322221111 11
Q ss_pred hcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCChhHHH
Q 005905 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-TVSTMNALITALCDGDQLPKTM 351 (670)
Q Consensus 273 ~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~ 351 (670)
..+....|...++...+.. +.+...+..+...|...|++++|...|+++.+..+.+ +...+..+...|...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 1122223566666666543 3346666777777777777777777777776654322 2456667777777777777777
Q ss_pred HHHHHHH
Q 005905 352 EVLSDMK 358 (670)
Q Consensus 352 ~l~~~m~ 358 (670)
..|++..
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776544
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.6e-05 Score=79.04 Aligned_cols=225 Identities=10% Similarity=-0.045 Sum_probs=176.1
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCCCH-HHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--
Q 005905 162 TACGQSGAVDRAFDVLAEMNAEVHPVDPDH-ITIGALMKACANAG--QVDRAREVYKMIHKYNIKGTPEVYTIAINCC-- 236 (670)
Q Consensus 162 ~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~-~t~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~-- 236 (670)
.........++|+++++.+... .|+. ..|+.--..+...| +++++++.++.+...+ +-+..+|+.--..+
T Consensus 41 a~~~~~e~s~~aL~~t~~~L~~----nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~ 115 (306)
T 3dra_A 41 ALMKAEEYSERALHITELGINE----LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQ 115 (306)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHH----CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHH
Confidence 3334444557999999999874 5664 45676677777788 9999999999999876 55667777654444
Q ss_pred --Hhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH--HHHHHHHHHHHCCCCccHHHHHHHHHHHHhc
Q 005905 237 --SQT---GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE--AAFEILQEAKNQGISVGIISYSSLMGACSNA 309 (670)
Q Consensus 237 --~~~---g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~--~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~ 309 (670)
... +++++++.+++++.+...+ |...|..-.-++.+.|.++ ++++.++.+.+.. +-|...|+.-...+.+.
T Consensus 116 ~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l 193 (306)
T 3dra_A 116 IMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSK 193 (306)
T ss_dssp HHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSS
T ss_pred HHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 555 7899999999999988765 7788877777778888887 9999999999876 56777888777777777
Q ss_pred CC------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhH-HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC
Q 005905 310 KN------WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK-TMEVLSDMKSLG--LCPNTITYSILLVACERKD 380 (670)
Q Consensus 310 g~------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~g--~~p~~~t~~~ll~a~~~~g 380 (670)
+. ++++.+.++++....+ -|...|+.+-..+.+.|+..+ +.++..++...+ -..+...+..+..++.+.|
T Consensus 194 ~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~ 272 (306)
T 3dra_A 194 KHLATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQK 272 (306)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTT
T ss_pred cccchhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccC
Confidence 76 8999999998887764 489999999999999888555 445666655432 2357788888999999999
Q ss_pred CHHHHHHHHHHHHH
Q 005905 381 DVEVGLMLLSQAKE 394 (670)
Q Consensus 381 ~~~~a~~~~~~m~~ 394 (670)
+.++|.++++.+.+
T Consensus 273 ~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 273 KYNESRTVYDLLKS 286 (306)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999999876
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.60 E-value=3.9e-07 Score=102.30 Aligned_cols=173 Identities=12% Similarity=0.023 Sum_probs=133.8
Q ss_pred HHcCCHHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005905 202 ANAGQVDRAREVYKMIH--------KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273 (670)
Q Consensus 202 ~~~g~~~~A~~~~~~m~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~ 273 (670)
...|++++|.+.|++.. +.. +.+...+..+..+|.+.|++++|...|++..+.... +...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 67888999999998887 433 456678888888899999999999999988876543 66788888888888
Q ss_pred cCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHH
Q 005905 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 353 (670)
Q Consensus 274 ~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 353 (670)
.|++++|.+.|++..+.. +.+...+..+..+|.+.|++++ .+.|++..+.. +.+...|..+..+|.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999888765 4456778888888999999988 88888887765 33677888888889999999999999
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 005905 354 LSDMKSLGLCPN-TITYSILLVACERKDD 381 (670)
Q Consensus 354 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~ 381 (670)
|++..+ +.|+ ...+..+..++...+.
T Consensus 557 ~~~al~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCT--TSTTHHHHHHHHHHHTC----
T ss_pred HHhhcc--cCcccHHHHHHHHHHHHccCC
Confidence 888776 3565 3455556666655444
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.60 E-value=3.2e-06 Score=80.52 Aligned_cols=188 Identities=11% Similarity=-0.008 Sum_probs=123.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHH
Q 005905 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP--EVY 229 (670)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~ 229 (670)
+...+..+...+.+.|++++|+..|+++.... +-.|. ...+..+..++.+.|++++|...|+.+.+....... .++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHH
Confidence 34456667778889999999999999998752 11121 346777888999999999999999998876522111 244
Q ss_pred HHHHHHHHh------------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 005905 230 TIAINCCSQ------------------TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291 (670)
Q Consensus 230 ~~li~~~~~------------------~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~ 291 (670)
..+..++.+ .|++++|...|+++++.... +.......... ..+...+
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~---- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHH----
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHH----
Confidence 444444443 46777777777777765322 11111111100 0000000
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 005905 292 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT--VSTMNALITALCDGDQLPKTMEVLSDMKSL 360 (670)
Q Consensus 292 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 360 (670)
......+...|.+.|++++|...|+++.+..+... ...+..+..+|.+.|+.++|.+.++.+...
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 01123566788899999999999999887532211 256888899999999999999999988875
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.59 E-value=4.8e-06 Score=78.50 Aligned_cols=175 Identities=14% Similarity=0.077 Sum_probs=87.6
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----ChHHHHHHHH
Q 005905 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG----KVEAAFEILQ 285 (670)
Q Consensus 210 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g----~~~~A~~i~~ 285 (670)
|.+.|++..+.| ++..+..+-..|...+++++|...|++..+.| +...+..|-..|.. + +.++|.+.|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 344444444432 34445555555555555555555555555443 33344444444444 3 5555555555
Q ss_pred HHHHCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh----CCChhHHHHHHHH
Q 005905 286 EAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLK-PTVSTMNALITALCD----GDQLPKTMEVLSD 356 (670)
Q Consensus 286 ~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~----~g~~~~A~~l~~~ 356 (670)
...+.| +...+..|..+|.. .+++++|.+.|++..+.+.. .+...+..|-..|.. .++.++|+..|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 555443 34444555555554 55666666666655544311 014555555555555 5556666666666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 005905 357 MKSLGLCPNTITYSILLVACERK-D-----DVEVGLMLLSQAKEDG 396 (670)
Q Consensus 357 m~~~g~~p~~~t~~~ll~a~~~~-g-----~~~~a~~~~~~m~~~g 396 (670)
..+. ..+...+..|-..|... | +.++|..+|+...+.|
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 5553 12223344444444322 2 5666666666666555
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=3.1e-07 Score=81.44 Aligned_cols=143 Identities=8% Similarity=-0.024 Sum_probs=93.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 005905 161 ITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 239 (670)
Q Consensus 161 i~~~~~~g~~~~A~~l~~~m~~~~~~~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 239 (670)
...+...|++++|+..|...... .|+ ...+..+...|.+.|++++|.+.|++..+.+ +.+..+|..+..+|.+.
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~----~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPS----PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCS----HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHcChHHHHHHHHHHhccc----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 34455567778888877776543 333 3345566777778888888888887777765 55677777777778888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH-HHHHHHCCCCccHHHHHHHHHHHHhcC
Q 005905 240 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI-LQEAKNQGISVGIISYSSLMGACSNAK 310 (670)
Q Consensus 240 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i-~~~m~~~~~~~~~~~~~~li~~~~~~g 310 (670)
|++++|...|++..+.... +...+..+...|.+.|+.++|.+. ++...+.. +-+..+|......+...|
T Consensus 79 ~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred CchHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 8888888888777776543 566677777777777776655443 46665543 334556665555555554
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.58 E-value=2.7e-06 Score=83.77 Aligned_cols=180 Identities=12% Similarity=0.006 Sum_probs=126.6
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005905 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAK 288 (670)
Q Consensus 210 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~li~~~~~~g~~~~A~~i~~~m~ 288 (670)
|...|++....+ +++..++..+..++...|++++|++++.+.+..+.. -+...+..++..+.+.|+.+.|.++++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566777766654 455666678888888899999999999888766542 255677788888999999999999999987
Q ss_pred HCCCCc-----cHHHHHHHHHH--HHh--cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 289 NQGISV-----GIISYSSLMGA--CSN--AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 289 ~~~~~~-----~~~~~~~li~~--~~~--~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
+. .| +..+...|..+ ... .+++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 75 34 24444555555 222 33889999999998754 35534444455588888999999999987654
Q ss_pred C-----CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005905 360 L-----GL---CP-NTITYSILLVACERKDDVEVGLMLLSQAKEDG 396 (670)
Q Consensus 360 ~-----g~---~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g 396 (670)
. .. .| |..++..++......|+ +|.++++++.+..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 2 11 14 45556566666666776 7888888888753
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.4e-06 Score=95.66 Aligned_cols=154 Identities=12% Similarity=-0.038 Sum_probs=103.4
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005905 167 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246 (670)
Q Consensus 167 ~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 246 (670)
.|++++|++.|++..+.. +.+...+..+...+...|++++|.+.|++..+.. +.+..+|..+..+|...|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR---PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 467788888888876541 2346677777888888888888888888887765 556778888888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc---CCHHHHHHHHHHHH
Q 005905 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA---KNWQKALELYEHMK 323 (670)
Q Consensus 247 ~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~ 323 (670)
+.|++..+.... +...+..+..+|...|++++|.+.+++..+.. +.+...+..+...|... |++++|.+.|++..
T Consensus 78 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 78 VLLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 888888776533 56777777788888888888888888877764 44567777777888887 88888888888777
Q ss_pred hCC
Q 005905 324 SIK 326 (670)
Q Consensus 324 ~~~ 326 (670)
+.+
T Consensus 156 ~~~ 158 (568)
T 2vsy_A 156 AQG 158 (568)
T ss_dssp HHT
T ss_pred hcC
Confidence 654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.4e-06 Score=95.78 Aligned_cols=151 Identities=10% Similarity=-0.093 Sum_probs=69.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 005905 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 284 (670)
Q Consensus 205 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~ 284 (670)
|++++|.+.|++..+.. +.+...|..+...|.+.|++++|.+.|++..+.... +...+..+..+|...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 44555555555554433 334455555555555555555555555555544322 3445555555555555555555555
Q ss_pred HHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC---CChhHHHHHHHHHHh
Q 005905 285 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG---DQLPKTMEVLSDMKS 359 (670)
Q Consensus 285 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~ 359 (670)
++..+.. +.+...+..+..+|.+.|++++|.+.|++..+.. +.+...+..+...|... |+.++|.+.|++..+
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 5555443 2334455555555555555555555555554433 12344555555555555 555555555555544
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.56 E-value=5.7e-06 Score=77.96 Aligned_cols=178 Identities=14% Similarity=0.049 Sum_probs=140.4
Q ss_pred HHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHH
Q 005905 171 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG----DWEFAC 246 (670)
Q Consensus 171 ~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----~~~~A~ 246 (670)
.+|++.|++..+. -+...+..+...|...+++++|.+.|++..+.+ ++..+..|-..|.. + ++++|.
T Consensus 3 ~eA~~~~~~aa~~-----g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~ 73 (212)
T 3rjv_A 3 TEPGSQYQQQAEA-----GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQAR 73 (212)
T ss_dssp -CTTHHHHHHHHT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHH
T ss_pred chHHHHHHHHHHC-----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHH
Confidence 3567788887764 356778888888888999999999999988865 46778888888877 6 899999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCC-ccHHHHHHHHHHHHh----cCCHHHHHH
Q 005905 247 SVYDDMTKKGVIPDEVFLSALIDFAGH----AGKVEAAFEILQEAKNQGIS-VGIISYSSLMGACSN----AKNWQKALE 317 (670)
Q Consensus 247 ~l~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~i~~~m~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~ 317 (670)
..|++..+.| +...+..|-..|.. .+++++|.+.|+...+.+.. .+...+..|..+|.. .+++++|..
T Consensus 74 ~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 74 QLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 9999998776 55677777777776 78999999999998887632 126778888888888 889999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhC-C-----ChhHHHHHHHHHHhCCC
Q 005905 318 LYEHMKSIKLKPTVSTMNALITALCDG-D-----QLPKTMEVLSDMKSLGL 362 (670)
Q Consensus 318 ~~~~m~~~~~~p~~~~~~~li~~~~~~-g-----~~~~A~~l~~~m~~~g~ 362 (670)
.|++..+. ..+...+..|...|... | +.++|+..|++..+.|.
T Consensus 151 ~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 151 YFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 99998876 23555777787777754 3 88999999998887663
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.54 E-value=7.7e-06 Score=77.82 Aligned_cols=185 Identities=8% Similarity=-0.021 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHH
Q 005905 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKG--TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE--VFLSAL 267 (670)
Q Consensus 192 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~l 267 (670)
..+..+...+.+.|++++|...|+.+.+..... ....+..+..+|.+.|++++|...|+++.+....... ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 455566777889999999999999988754221 1357788889999999999999999999876543221 133333
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---------------
Q 005905 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS--------------- 332 (670)
Q Consensus 268 i~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--------------- 332 (670)
..++...+.. . ...|..+...+...|++++|...|+++.+..+. +..
T Consensus 85 g~~~~~~~~~-----~------------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~~~~~~ 146 (225)
T 2yhc_A 85 GLTNMALDDS-----A------------LQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVFLKDRL 146 (225)
T ss_dssp HHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhh-----h------------hhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHHHHHHH
Confidence 3333331100 0 001111222223344445555555544433211 111
Q ss_pred --HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005905 333 --TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT----ITYSILLVACERKDDVEVGLMLLSQAKEDG 396 (670)
Q Consensus 333 --~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g 396 (670)
....+...|.+.|++++|+..|+++.+. .|+. ..+..+..++.+.|+.++|.+.++.+...+
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 1134567889999999999999999874 4542 467788889999999999999999888764
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=2.4e-07 Score=82.15 Aligned_cols=112 Identities=13% Similarity=-0.005 Sum_probs=51.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 005905 238 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317 (670)
Q Consensus 238 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 317 (670)
..|++++|+..+......... +...+-.+...|.+.|++++|.+.|++..+.. +-+..+|..+..+|.+.|++++|..
T Consensus 9 ~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHH
Confidence 334444444444444332110 11223334444445555555555555544443 3334455555555555555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHH
Q 005905 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 352 (670)
Q Consensus 318 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 352 (670)
.|++..+..+ -+...|..+...|.+.|+.++|.+
T Consensus 87 ~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~ 120 (150)
T 4ga2_A 87 CYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAK 120 (150)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHH
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHH
Confidence 5555544331 234455555555555555544443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=1.9e-06 Score=85.66 Aligned_cols=165 Identities=10% Similarity=-0.052 Sum_probs=117.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-H
Q 005905 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL-I 268 (670)
Q Consensus 190 d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-i 268 (670)
+...+..+...+...|++++|...|++..+.. +.+...+..+...|.+.|++++|...+++..... |+....... .
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 34455666677778888888888888887765 5567788888888888888888888888876653 343322222 2
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhCCCh
Q 005905 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK-PTVSTMNALITALCDGDQL 347 (670)
Q Consensus 269 ~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~ 347 (670)
..+...++.+.|...+++..+.. +.+...+..+...|...|++++|...|.++.+.... .+...+..+...|...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 23556666777777777777765 556777778888888888888888888887765322 1256777788888888888
Q ss_pred hHHHHHHHHHH
Q 005905 348 PKTMEVLSDMK 358 (670)
Q Consensus 348 ~~A~~l~~~m~ 358 (670)
++|...|++-.
T Consensus 272 ~~a~~~~r~al 282 (287)
T 3qou_A 272 DALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 88887776643
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.9e-06 Score=86.46 Aligned_cols=191 Identities=12% Similarity=0.050 Sum_probs=91.2
Q ss_pred cCCHHHHHHHHHHHhhCCC----CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CC--CHHHHHHHH
Q 005905 167 SGAVDRAFDVLAEMNAEVH----PVDPDH----ITIGALMKACANAGQVDRAREVYKMIHKYNI---KG--TPEVYTIAI 233 (670)
Q Consensus 167 ~g~~~~A~~l~~~m~~~~~----~~~pd~----~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~--~~~~~~~li 233 (670)
.|++++|.+++++..+... ++.++. ..|......|...|++++|...|.+..+... .+ -..+|+.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4667777777776654210 011221 1334444455566666666666655443210 00 023455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC----CC-ccHHHHHHHH
Q 005905 234 NCCSQTGDWEFACSVYDDMTKK----GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQG----IS-VGIISYSSLM 303 (670)
Q Consensus 234 ~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~----~~-~~~~~~~~li 303 (670)
.+|.+.|++++|+..|++..+. |-.. -..++..+..+|.. |++++|...|++..+.. .. ....+++.+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 162 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS 162 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 6666666666666666554332 1000 12344455555555 66666665555544321 00 0123455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 005905 304 GACSNAKNWQKALELYEHMKSI----KLKPT-VSTMNALITALCDGDQLPKTMEVLSDMK 358 (670)
Q Consensus 304 ~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~ 358 (670)
..|.+.|++++|...|++..+. +..+. ...+..+..++...|++++|+..|++..
T Consensus 163 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 163 RLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 5556666666666655554431 11111 1234444445555556666666555554
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.50 E-value=1.4e-05 Score=79.57 Aligned_cols=197 Identities=6% Similarity=-0.042 Sum_probs=103.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHhcC-CCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHH----HH
Q 005905 123 LKADCKLYTTLITTCAKSGKVDAMFENV-KPDRVV---FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI----TI 194 (670)
Q Consensus 123 ~~pd~~~~~~li~~~~~~g~~~~~~~~~-~~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~----t~ 194 (670)
..|+..+...+...+.. .++..+... ..+... +...+..+...|++++|..++++..... ...|+.. .+
T Consensus 42 ~~~~~~~l~~i~~~l~~--~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~-~~~~~~~~~~~~~ 118 (293)
T 3u3w_A 42 VYPSMDILQGIAAKLQI--PIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQ 118 (293)
T ss_dssp CCCCHHHHHHHHHHHTC--CTHHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCc--CHHHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc-cCChHHHHHHHHH
Confidence 45665555555444321 223333332 222322 2334667778888888888888877641 2223321 22
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCC-HHH
Q 005905 195 GALMKACANAGQVDRAREVYKMIHKYNIK-GT----PEVYTIAINCCSQTGDWEFACSVYDDMTKK-----GVIPD-EVF 263 (670)
Q Consensus 195 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~p~-~~t 263 (670)
..+...+...|++++|...|++..+.... ++ ..+++.+..+|...|++++|...|++..+. +..+. ..+
T Consensus 119 ~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 198 (293)
T 3u3w_A 119 YYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKV 198 (293)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHH
Confidence 23445555666777777777777663222 12 235677777777777777777777776531 11111 124
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC----CCCc-cHHHHHHHHHHHHhcC-CHHHHHHHHHHH
Q 005905 264 LSALIDFAGHAGKVEAAFEILQEAKNQ----GISV-GIISYSSLMGACSNAK-NWQKALELYEHM 322 (670)
Q Consensus 264 ~~~li~~~~~~g~~~~A~~i~~~m~~~----~~~~-~~~~~~~li~~~~~~g-~~~~A~~~~~~m 322 (670)
+..+..+|.+.|++++|...+++..+. +..+ -..+|..+..+|.+.| .+++|.+.|++.
T Consensus 199 ~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 199 RYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 455555566666666666655554431 1111 1345555555555555 245555555543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.7e-06 Score=78.87 Aligned_cols=161 Identities=12% Similarity=0.037 Sum_probs=115.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-
Q 005905 157 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC- 235 (670)
Q Consensus 157 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~- 235 (670)
+..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|...|+.+.... + +...+..+...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-p-~~~~~~~~~~~~ 83 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL---QSRGDVKLAKADCLLETKQFELAQELLATIPLEY-Q-DNSYKSLIAKLE 83 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH---HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-C-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-C-ChHHHHHHHHHH
Confidence 4455667788888999999888877641 2345677778888888999999998888876654 2 54443332212
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCCHHH
Q 005905 236 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV-GIISYSSLMGACSNAKNWQK 314 (670)
Q Consensus 236 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~ 314 (670)
+.+.+....|...|++..+.... +...+..+..++...|++++|...|+.+.+....+ +...+..+...|...|+.++
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 12223334577888888776543 57788888888889999999999999888775432 35677888888889999988
Q ss_pred HHHHHHHHH
Q 005905 315 ALELYEHMK 323 (670)
Q Consensus 315 A~~~~~~m~ 323 (670)
|...|++..
T Consensus 163 A~~~y~~al 171 (176)
T 2r5s_A 163 IASKYRRQL 171 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.47 E-value=7.6e-05 Score=74.09 Aligned_cols=228 Identities=9% Similarity=0.010 Sum_probs=164.2
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHh
Q 005905 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSG--AVDRAFDVLAEMN 181 (670)
Q Consensus 104 ~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~l~~~m~ 181 (670)
+....++|+.+++.++... |+. ..+||.--..+...| ++++++++++.+.
T Consensus 45 ~~e~s~~aL~~t~~~L~~n--P~~--------------------------~taWn~R~~~L~~l~~~~~~eeL~~~~~~L 96 (306)
T 3dra_A 45 AEEYSERALHITELGINEL--ASH--------------------------YTIWIYRFNILKNLPNRNLYDELDWCEEIA 96 (306)
T ss_dssp TTCCSHHHHHHHHHHHHHC--TTC--------------------------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHC--cHH--------------------------HHHHHHHHHHHHHcccccHHHHHHHHHHHH
Confidence 3344467888888877753 432 234454444555555 8899999999888
Q ss_pred hCCCCCCCC-HHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHH
Q 005905 182 AEVHPVDPD-HITIGALMKAC----ANA---GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE--FACSVYDD 251 (670)
Q Consensus 182 ~~~~~~~pd-~~t~~~li~~~----~~~---g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~l~~~ 251 (670)
.. .|. ...|+.-...+ ... +++++++++++.+.+.. +-+..+|+.-.-++.+.|.++ ++++.+++
T Consensus 97 ~~----nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~ 171 (306)
T 3dra_A 97 LD----NEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDK 171 (306)
T ss_dssp HH----CTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HH----CcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHH
Confidence 75 333 34454433333 444 78899999999998876 668888888888888888888 99999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCC------hHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHH-HHHHHHHHHh
Q 005905 252 MTKKGVIPDEVFLSALIDFAGHAGK------VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK-ALELYEHMKS 324 (670)
Q Consensus 252 m~~~g~~p~~~t~~~li~~~~~~g~------~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~ 324 (670)
+++..+. |...|+.-.....+.+. ++++++.+..+.... +-|...|+-+-..+.+.|+... +..+..++.+
T Consensus 172 ~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~ 249 (306)
T 3dra_A 172 VIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVD 249 (306)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEE
T ss_pred HHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHh
Confidence 9988766 77777766666666665 888999998888876 6778889888888888887444 4456665544
Q ss_pred CC--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHH
Q 005905 325 IK--LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367 (670)
Q Consensus 325 ~~--~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 367 (670)
.+ -..+...+..+...|.+.|+.++|+++++.+.+. +.|-..
T Consensus 250 ~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~-~Dpir~ 293 (306)
T 3dra_A 250 LEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK-YNPIRS 293 (306)
T ss_dssp GGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGH
T ss_pred ccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-cChHHH
Confidence 32 1347788889999999999999999999998763 345433
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=2.8e-06 Score=84.30 Aligned_cols=165 Identities=8% Similarity=-0.092 Sum_probs=132.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHH-HH
Q 005905 223 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY-SS 301 (670)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~-~~ 301 (670)
+.+...+..+...+.+.|++++|...|++..+.... +...+..+..++...|++++|...++.+.... |+.... ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 455667778888899999999999999999887654 67788889999999999999999999887654 343332 23
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHh
Q 005905 302 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN---TITYSILLVACER 378 (670)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~ 378 (670)
....+...++.++|...|++..+.. +.+...+..+...|...|++++|+..|.++.+. .|+ ...+..+...+..
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--~p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRX--DLTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTGGGGHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--ccccccchHHHHHHHHHHH
Confidence 3334667788888999998887765 347888999999999999999999999999874 344 5678888899999
Q ss_pred cCCHHHHHHHHHHHH
Q 005905 379 KDDVEVGLMLLSQAK 393 (670)
Q Consensus 379 ~g~~~~a~~~~~~m~ 393 (670)
.|+.++|...+++..
T Consensus 268 ~g~~~~a~~~~r~al 282 (287)
T 3qou_A 268 LGTGDALASXYRRQL 282 (287)
T ss_dssp HCTTCHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHH
Confidence 999999988887654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.41 E-value=4.4e-06 Score=83.83 Aligned_cols=189 Identities=13% Similarity=0.093 Sum_probs=136.0
Q ss_pred cCCHHHHHHHHHHHHHc------CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-CHHHHHHHH
Q 005905 204 AGQVDRAREVYKMIHKY------NIKGTP----EVYTIAINCCSQTGDWEFACSVYDDMTKKG----VIP-DEVFLSALI 268 (670)
Q Consensus 204 ~g~~~~A~~~~~~m~~~------~~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p-~~~t~~~li 268 (670)
.|++++|.+++++..+. +..++. ..|+.....|...|++++|...|.+..+.. -.+ -..+|..+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677888888766542 112332 357777788999999999999998876532 111 134788888
Q ss_pred HHHHhcCChHHHHHHHHHHHHC----CCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---C--CHHHHHHHH
Q 005905 269 DFAGHAGKVEAAFEILQEAKNQ----GISV-GIISYSSLMGACSNAKNWQKALELYEHMKSIKLK---P--TVSTMNALI 338 (670)
Q Consensus 269 ~~~~~~g~~~~A~~i~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---p--~~~~~~~li 338 (670)
.+|...|++++|...|++..+. |-.. ...+++.+...|.. |++++|...|++..+.... + ...+++.+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 162 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS 162 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 8999999999999999887543 2111 24678888889988 9999999999987643111 1 146788889
Q ss_pred HHHHhCCChhHHHHHHHHHHh----CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005905 339 TALCDGDQLPKTMEVLSDMKS----LGLCPNT-ITYSILLVACERKDDVEVGLMLLSQAK 393 (670)
Q Consensus 339 ~~~~~~g~~~~A~~l~~~m~~----~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~ 393 (670)
..|.+.|++++|+..|++... .+..++. .++..+..++...|++++|...|++..
T Consensus 163 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 163 RLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 999999999999999999875 2222222 255666667778899999999999887
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.40 E-value=2.1e-05 Score=73.63 Aligned_cols=129 Identities=12% Similarity=-0.024 Sum_probs=91.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005905 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 235 (670)
Q Consensus 156 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 235 (670)
.+..+...+...|++++|+..|++.. .|+...+..+...+...|++++|...|+...+.. +.+..+|..+..+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 45556677778888888888887653 4566777788888888888888888888877765 5567778888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC---------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 005905 236 CSQTGDWEFACSVYDDMTKKGVIP---------------DEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291 (670)
Q Consensus 236 ~~~~g~~~~A~~l~~~m~~~g~~p---------------~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~ 291 (670)
|...|++++|...|++..+..... ....+..+..+|...|++++|...++...+..
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 888888888888888877653221 11455556666666666666666666666543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.39 E-value=1.8e-05 Score=74.23 Aligned_cols=129 Identities=12% Similarity=0.003 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005905 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272 (670)
Q Consensus 193 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 272 (670)
.+..+...+...|++++|...|++.. .++..+|..+...|.+.|++++|...|++..+... .+...+..+..+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHH
Confidence 34556667778888888888887663 55777888888888888888888888888877653 36677778888888
Q ss_pred hcCChHHHHHHHHHHHHCCCC--------------c-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005905 273 HAGKVEAAFEILQEAKNQGIS--------------V-GIISYSSLMGACSNAKNWQKALELYEHMKSIK 326 (670)
Q Consensus 273 ~~g~~~~A~~i~~~m~~~~~~--------------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 326 (670)
..|++++|.+.++...+.... | ...++..+..+|.+.|++++|...|+...+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 888888888888888775311 1 23667777788888888888888888877654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.36 E-value=4.1e-06 Score=74.09 Aligned_cols=124 Identities=10% Similarity=-0.034 Sum_probs=93.7
Q ss_pred HHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHH
Q 005905 129 LYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208 (670)
Q Consensus 129 ~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~ 208 (670)
+...+.+.+...+.+..+.+.-+.+...|..+...+.+.|++++|+..|++..... +.+...|..+..+|...|+++
T Consensus 11 ~~~~l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~---P~~~~~~~~lg~~~~~~g~~~ 87 (151)
T 3gyz_A 11 ISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD---FYNVDYIMGLAAIYQIKEQFQ 87 (151)
T ss_dssp HHHHHHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHccHH
Confidence 34555555555555665555444456677788888888888999999888888742 234667778888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005905 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256 (670)
Q Consensus 209 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 256 (670)
+|...|++..+.. +.++..|..+..+|.+.|++++|...|++..+..
T Consensus 88 ~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 88 QAADLYAVAFALG-KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8888888888876 5567788888888888888888888888887764
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=0.00028 Score=70.86 Aligned_cols=231 Identities=9% Similarity=-0.035 Sum_probs=170.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005905 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAG-QVDRAREVYKMIHKYNIKGTPEVYTIAI 233 (670)
Q Consensus 156 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd-~~t~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li 233 (670)
.++.+-......+..++|+++++.+... .|+ ...|+.--..+...| .+++++++++.+...+ +-+..+|+.--
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~----nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~ 130 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRM----NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRL 130 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHh----CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 3444444555566678999999999875 555 445676666777788 5999999999999876 66788998877
Q ss_pred HHHHhc-C-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH--------HHHHHHHHHHHCCCCccHHHHHHHH
Q 005905 234 NCCSQT-G-DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE--------AAFEILQEAKNQGISVGIISYSSLM 303 (670)
Q Consensus 234 ~~~~~~-g-~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~--------~A~~i~~~m~~~~~~~~~~~~~~li 303 (670)
.++.+. + ++++++++++++.+...+ |...|+.-.-+..+.+.++ ++++.+..+.+.. +-|...|+-..
T Consensus 131 wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~ 208 (349)
T 3q7a_A 131 LLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRW 208 (349)
T ss_dssp HHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 777776 7 899999999999988765 7777766555555555555 8999999998876 56788888888
Q ss_pred HHHHhcCC-------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCh--------------------hHHHHHHHH
Q 005905 304 GACSNAKN-------WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL--------------------PKTMEVLSD 356 (670)
Q Consensus 304 ~~~~~~g~-------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--------------------~~A~~l~~~ 356 (670)
..+.+.+. ++++.+.+.+.....+ -|...|+.+-..+.+.|+. .+..+...+
T Consensus 209 ~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (349)
T 3q7a_A 209 YLRVSRPGAETSSRSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFP 287 (349)
T ss_dssp HHHTTSTTCCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CC
T ss_pred HHHHhccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHH
Confidence 88888876 7889999988887663 4888998888777777765 223333333
Q ss_pred HHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 357 MKSLG-----LCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 357 m~~~g-----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 394 (670)
+...+ -.++...+..+...|...|+.++|.++++.+.+
T Consensus 288 ~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 288 MPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 33221 136777888888899999999999999988764
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.33 E-value=2.2e-05 Score=65.88 Aligned_cols=98 Identities=18% Similarity=0.152 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005905 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 233 (670)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 233 (670)
...|..+...|...|++++|.++|+++.... +.+..++..+...+...|++++|...|+.+.+.. +.+..++..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 84 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLG 84 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHH
Confidence 3445555566666666666666666665431 2234455555556666666666666666655543 34455555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 005905 234 NCCSQTGDWEFACSVYDDMTKK 255 (670)
Q Consensus 234 ~~~~~~g~~~~A~~l~~~m~~~ 255 (670)
..|.+.|++++|...|+++.+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 85 NAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHh
Confidence 6666666666666666665554
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.33 E-value=2.3e-05 Score=69.80 Aligned_cols=92 Identities=12% Similarity=-0.027 Sum_probs=39.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005905 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275 (670)
Q Consensus 196 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g 275 (670)
.+...+...|++++|...|+...+.. +.+..++..+..+|...|++++|...|++..+... .+...+..+..++...|
T Consensus 18 ~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~ 95 (166)
T 1a17_A 18 TQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALG 95 (166)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhc
Confidence 33344444444444444444444432 22344444444444444444444444444444321 13334444444444444
Q ss_pred ChHHHHHHHHHHHH
Q 005905 276 KVEAAFEILQEAKN 289 (670)
Q Consensus 276 ~~~~A~~i~~~m~~ 289 (670)
++++|...++++.+
T Consensus 96 ~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 96 KFRAALRDYETVVK 109 (166)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 44444444444443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.32 E-value=2.6e-05 Score=77.44 Aligned_cols=125 Identities=6% Similarity=-0.011 Sum_probs=61.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC-CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHH
Q 005905 198 MKACANAGQVDRAREVYKMIHKYNIK-GTP----EVYTIAINCCSQTGDWEFACSVYDDMTKKGVI-PD----EVFLSAL 267 (670)
Q Consensus 198 i~~~~~~g~~~~A~~~~~~m~~~~~~-~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~l 267 (670)
+..+...|++++|..++++..+.... ++. ..+..+...|...|++++|+..|++..+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 45566667777777776666553211 111 12223444555555666666666666553211 11 1245555
Q ss_pred HHHHHhcCChHHHHHHHHHHHH----C-CCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005905 268 IDFAGHAGKVEAAFEILQEAKN----Q-GISV-GIISYSSLMGACSNAKNWQKALELYEHM 322 (670)
Q Consensus 268 i~~~~~~g~~~~A~~i~~~m~~----~-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 322 (670)
..+|...|++++|...++++.+ . +..+ ...++..+...|.+.|++++|...+++.
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a 222 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5555555555555555555542 1 1111 1224445555555555555555555543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.32 E-value=2.7e-05 Score=65.23 Aligned_cols=97 Identities=20% Similarity=0.149 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005905 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271 (670)
Q Consensus 192 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~ 271 (670)
..+..+...+...|++++|.+.|+++.+.. +.+..++..+...|.+.|++++|..+|+++.+... .+..++..+...|
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHH
Confidence 445555555666666666666666555543 33455555555556666666666666655554432 2344455555555
Q ss_pred HhcCChHHHHHHHHHHHHC
Q 005905 272 GHAGKVEAAFEILQEAKNQ 290 (670)
Q Consensus 272 ~~~g~~~~A~~i~~~m~~~ 290 (670)
...|++++|...++++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 5555555555555555443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.31 E-value=2.5e-05 Score=69.65 Aligned_cols=130 Identities=11% Similarity=-0.045 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005905 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 233 (670)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 233 (670)
...|..+...+...|++++|...|++..... +.+...+..+...+...|++++|...|++..+.. +.+..+|..+.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a 88 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN---PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 3467788889999999999999999988752 3457788889999999999999999999998875 56788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHH
Q 005905 234 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS--ALIDFAGHAGKVEAAFEILQEAK 288 (670)
Q Consensus 234 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~--~li~~~~~~g~~~~A~~i~~~m~ 288 (670)
.+|...|++++|...|++..+.... +...+. .....+...|++++|.+.+....
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 9999999999999999999887543 444443 33333666777888877776553
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.26 E-value=7e-05 Score=74.30 Aligned_cols=167 Identities=10% Similarity=0.010 Sum_probs=106.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---Ccc--HH
Q 005905 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE-----VFLSALIDFAGHAGKVEAAFEILQEAKNQGI---SVG--II 297 (670)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~---~~~--~~ 297 (670)
.+...+..+...|++++|.+.+.+..+.....+. ..+..+...+...|++++|...+.+..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3344555666777777777777666654322111 1233344556667778888887777764321 111 44
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh---C-CCCC--CHHHHHHHHHHHHhCCChhHHHHHHHHHHhC----CCCCC-H
Q 005905 298 SYSSLMGACSNAKNWQKALELYEHMKS---I-KLKP--TVSTMNALITALCDGDQLPKTMEVLSDMKSL----GLCPN-T 366 (670)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~---~-~~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~ 366 (670)
+++.+...|...|++++|...|++..+ . +..+ ...+|+.+...|...|++++|+..|++..+. +.... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 777888888888888888888887652 1 1111 1257777888888888888888888876542 11111 5
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 005905 367 ITYSILLVACERKDDVEVG-LMLLSQAKE 394 (670)
Q Consensus 367 ~t~~~ll~a~~~~g~~~~a-~~~~~~m~~ 394 (670)
.+|..+..++.+.|+.++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6677777888888888888 666766553
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.25 E-value=3.4e-05 Score=65.74 Aligned_cols=61 Identities=13% Similarity=0.165 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254 (670)
Q Consensus 193 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 254 (670)
.|..+..++.+.|++++|+..|+...+.+ +.+..+|..+..+|...|++++|.+.|++.++
T Consensus 49 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 49 LYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33333334444444444444444433332 22333333444444444444444444444333
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.25 E-value=3.1e-05 Score=66.04 Aligned_cols=115 Identities=10% Similarity=-0.004 Sum_probs=97.4
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 005905 187 VDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265 (670)
Q Consensus 187 ~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 265 (670)
+.|+ ...+......|.+.|++++|++.|++..+.+ +.+..+|..+..+|.+.|++++|+..|++.++.+.. +...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHH
Confidence 4555 3467778889999999999999999998876 678899999999999999999999999999987654 778899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHH
Q 005905 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304 (670)
Q Consensus 266 ~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~ 304 (670)
.+..++...|++++|.+.|+...+.. +-+...+..|-.
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~~ 123 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVD-PSNEEAREGVRN 123 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHHHH
Confidence 99999999999999999999999875 445566655543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00013 Score=72.32 Aligned_cols=161 Identities=6% Similarity=-0.044 Sum_probs=96.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HHHHH
Q 005905 197 LMKACANAGQVDRAREVYKMIHKYNIKGTP------EVYTIAINCCSQTGDWEFACSVYDDMTKKGV---IPD--EVFLS 265 (670)
Q Consensus 197 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~t~~ 265 (670)
.+..+...|++++|.+.+.+..+.... .. ..+..+...+...|++++|+..|.+..+... .+. ..+++
T Consensus 81 ~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 344444555555555555544443211 11 1223344555666677777777766654321 111 33666
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH---C-CCCc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCC-CHHHH
Q 005905 266 ALIDFAGHAGKVEAAFEILQEAKN---Q-GISV--GIISYSSLMGACSNAKNWQKALELYEHMKSIK----LKP-TVSTM 334 (670)
Q Consensus 266 ~li~~~~~~g~~~~A~~i~~~m~~---~-~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p-~~~~~ 334 (670)
.+...|...|++++|...++++.+ . +..+ ...+++.+...|.+.|++++|...|++..+.. ... -..+|
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~ 239 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 677777777777777777776652 1 1111 12577788888888888888888888765421 111 15677
Q ss_pred HHHHHHHHhCCChhHH-HHHHHHHH
Q 005905 335 NALITALCDGDQLPKT-MEVLSDMK 358 (670)
Q Consensus 335 ~~li~~~~~~g~~~~A-~~l~~~m~ 358 (670)
..+...|...|++++| ...|++..
T Consensus 240 ~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 8888888889999888 66676654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.23 E-value=3.1e-05 Score=65.95 Aligned_cols=93 Identities=13% Similarity=0.123 Sum_probs=37.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005905 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273 (670)
Q Consensus 194 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~ 273 (670)
+..+...+...|++++|...|++..+.. +.+..++..+..+|...|++++|...|++..+.... +...+..+..++..
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~ 96 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAALEA 96 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHH
Confidence 3333444444444444444444443332 223334444444444444444444444444333211 23333333334444
Q ss_pred cCChHHHHHHHHHHH
Q 005905 274 AGKVEAAFEILQEAK 288 (670)
Q Consensus 274 ~g~~~~A~~i~~~m~ 288 (670)
.|++++|.+.+++..
T Consensus 97 ~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 97 MKDYTKAMDVYQKAL 111 (133)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHH
Confidence 444444444444433
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=3.1e-05 Score=65.54 Aligned_cols=116 Identities=9% Similarity=-0.063 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005905 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 234 (670)
Q Consensus 155 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 234 (670)
..|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|.+.++...+.. +.+..++..+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN---PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 345555555666666666666666655431 2234455555555666666666666666555543 334555555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005905 235 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275 (670)
Q Consensus 235 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g 275 (670)
+|.+.|++++|...|++..+.... +...+..+..++...|
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHh
Confidence 666666666666666655554322 3444444444444443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.1e-05 Score=74.71 Aligned_cols=26 Identities=4% Similarity=-0.009 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005905 227 EVYTIAINCCSQTGDWEFACSVYDDM 252 (670)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~l~~~m 252 (670)
.++..+...|...|++++|...|++.
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~a 52 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQAL 52 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 34444444444445544444444444
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.21 E-value=4.2e-06 Score=82.80 Aligned_cols=187 Identities=13% Similarity=-0.024 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005905 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272 (670)
Q Consensus 193 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 272 (670)
.+..+...+.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|...+++..+.... +...+..+..+|.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 34444444445555555555555444433 234444555555555555555555555555444322 3444445555555
Q ss_pred hcCChHHHHHHHHHHHHCCC----CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChh
Q 005905 273 HAGKVEAAFEILQEAKNQGI----SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348 (670)
Q Consensus 273 ~~g~~~~A~~i~~~m~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 348 (670)
..|++++|...+....+... ......+..+ ...+... +..........+......+. .+ ..|+.+
T Consensus 84 ~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~~~-------~~~~~~~~~~~~~~i~~~l~-~l-~~~~~~ 152 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKKKR-------WNSIEERRIHQESELHSYLT-RL-IAAERE 152 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHHHH-------HHHHHHTCCCCCCHHHHHHH-HH-HHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHHHH-------HHHHHHHHHhhhHHHHHHHH-HH-HHHHHH
Confidence 55555555555554443210 0001111111 1111111 11112222233333333332 22 246777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhc-CCHHHHHHHHHHHHH
Q 005905 349 KTMEVLSDMKSLGLCPNTITYSILLVA-CERK-DDVEVGLMLLSQAKE 394 (670)
Q Consensus 349 ~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~-g~~~~a~~~~~~m~~ 394 (670)
+|++.+++..+. .|+......-+.. +.+. +.++++.++|..+.+
T Consensus 153 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 153 RELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 777777766653 5655444333333 3333 567788888877665
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.5e-05 Score=73.98 Aligned_cols=156 Identities=10% Similarity=0.017 Sum_probs=113.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CccHHHHHHHHHHHHhcCC
Q 005905 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GI-SVGIISYSSLMGACSNAKN 311 (670)
Q Consensus 237 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~----~~-~~~~~~~~~li~~~~~~g~ 311 (670)
...|++++|.++++.+.. ........+..+...+...|++++|...+++..+. +. .....+++.+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 457888899885555533 22235678888888999999999999999988762 21 2335678888999999999
Q ss_pred HHHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhCCChhHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHhc
Q 005905 312 WQKALELYEHMKSI----KLKP--TVSTMNALITALCDGDQLPKTMEVLSDMKS----LGLCPN--TITYSILLVACERK 379 (670)
Q Consensus 312 ~~~A~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~--~~t~~~ll~a~~~~ 379 (670)
+++|...|++..+. +..+ ....+..+...+...|++++|...+++... .+ .|. ..++..+...+...
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD-DQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHC
Confidence 99999999886643 2111 245677888899999999999999998764 22 111 23456677788899
Q ss_pred CCHHHHHHHHHHHHH
Q 005905 380 DDVEVGLMLLSQAKE 394 (670)
Q Consensus 380 g~~~~a~~~~~~m~~ 394 (670)
|++++|...+++..+
T Consensus 161 g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 161 KNLLEAQQHWLRARD 175 (203)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999987765
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.21 E-value=3.4e-05 Score=65.30 Aligned_cols=95 Identities=9% Similarity=-0.019 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005905 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272 (670)
Q Consensus 193 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 272 (670)
.+..+...+...|++++|...|+...... +.+..++..+...|...|++++|...+++..+.... +...+..+..++.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHHHH
Confidence 34444445555555555555555554433 233444555555555555555555555554443221 2334444444444
Q ss_pred hcCChHHHHHHHHHHHH
Q 005905 273 HAGKVEAAFEILQEAKN 289 (670)
Q Consensus 273 ~~g~~~~A~~i~~~m~~ 289 (670)
..|++++|...++...+
T Consensus 92 ~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 44444444444444443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.7e-05 Score=71.94 Aligned_cols=120 Identities=13% Similarity=0.112 Sum_probs=63.2
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCh--HH
Q 005905 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF-AGHAGKV--EA 279 (670)
Q Consensus 203 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~-~~~~g~~--~~ 279 (670)
..|++++|...++...+.. +.+..+|..+...|...|++++|...|++..+.... +...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHH
Confidence 3455555666665555543 344555666666666666666666666665554322 44444445555 4455555 56
Q ss_pred HHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 005905 280 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325 (670)
Q Consensus 280 A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 325 (670)
|...++.+.+.. +.+...+..+...|...|++++|...|++..+.
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 666665555543 233455555555566666666666666655544
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.18 E-value=3.2e-05 Score=65.84 Aligned_cols=120 Identities=11% Similarity=-0.036 Sum_probs=97.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 005905 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 230 (670)
Q Consensus 151 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 230 (670)
..+...|..+...|.+.|++++|+..|++..... +.+...+..+...+...|++++|.+.|++..+.. +.+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 88 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN---PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYT 88 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC---TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHH
Confidence 3456788899999999999999999999998752 3367788888899999999999999999998875 56788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005905 231 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275 (670)
Q Consensus 231 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g 275 (670)
.+..+|.+.|++++|...|++..+.... +...+..+..++...|
T Consensus 89 ~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 89 RKAAALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 9999999999999999999998876433 3445555555554443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.16 E-value=1.4e-05 Score=70.62 Aligned_cols=95 Identities=9% Similarity=-0.065 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005905 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377 (670)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 377 (670)
.+..+...|.+.|++++|...|++..... +.+...|..+..+|...|++++|+..|++..+.. +-+...|..+-.++.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 34444444555555555555555554443 1244455555555555555555555555554421 112344444445555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 005905 378 RKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 378 ~~g~~~~a~~~~~~m~~ 394 (670)
..|++++|...|++..+
T Consensus 116 ~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555544
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.15 E-value=0.003 Score=67.45 Aligned_cols=336 Identities=9% Similarity=-0.002 Sum_probs=172.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhh-HHHHHHHhhhC------CCCCHHHHHHHHHHHHc----C
Q 005905 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA-IKEAFRFFKLV------PNPTLSTFNMLMSVCAS----S 105 (670)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~------~~~~~~~y~~li~~~~~----~ 105 (670)
-.|+++.+.++|++....- |... +....+....+.+. .+.....|+.. ...+...|...+..+.. .
T Consensus 26 P~~~~e~~~~iferal~~~--ps~~-LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~ 102 (493)
T 2uy1_A 26 MSKDYRSLESLFGRCLKKS--YNLD-LWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQ 102 (493)
T ss_dssp HTTCHHHHHHHHHHHSTTC--CCHH-HHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHH
T ss_pred CCCCHHHHHHHHHHHhccC--CCHH-HHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhh
Confidence 3488888999988887743 4333 33334444443332 22233344431 13466778777766542 3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 005905 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185 (670)
Q Consensus 106 g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 185 (670)
++.+.+..+|++.+.. ++.. +..+-..|... +.. .+..+...++..+. +.+..|..+++.+...-.
T Consensus 103 ~~~~~vR~iy~rAL~~--P~~~--~~~lw~~Y~~f---E~~-----~~~~~~~~~~~~~~--~~y~~ar~~y~~~~~~~~ 168 (493)
T 2uy1_A 103 TRIEKIRNGYMRALQT--PMGS--LSELWKDFENF---ELE-----LNKITGKKIVGDTL--PIFQSSFQRYQQIQPLIR 168 (493)
T ss_dssp HHHHHHHHHHHHHHTS--CCTT--HHHHHHHHHHH---HHH-----HCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC--hhhh--HHHHHHHHHHH---HHH-----hccccHHHHHHHHh--HHHHHHHHHHHHHHHHHh
Confidence 5677888888888873 2221 12222222221 000 01112222222211 223444444444432100
Q ss_pred CCCCCHHHHHHHHHHHHHc--C-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 005905 186 PVDPDHITIGALMKACANA--G-----QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258 (670)
Q Consensus 186 ~~~pd~~t~~~li~~~~~~--g-----~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 258 (670)
..+...|...+.--... | ..+.+..+|+.+.... +.+...|...+..+.+.|+.+.|..+|++.... +
T Consensus 169 --~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P 243 (493)
T 2uy1_A 169 --GWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--S 243 (493)
T ss_dssp --TCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred --hccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--C
Confidence 01233444444432221 1 1345667777777643 555777777777777888888888888887776 2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC------------CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005905 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG------------ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326 (670)
Q Consensus 259 p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 326 (670)
.+...+. .|+.....++. ++.+.+.- ......+|...+..+.+.+..+.|..+|+.. ...
T Consensus 244 ~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~ 315 (493)
T 2uy1_A 244 DGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE 315 (493)
T ss_dssp CSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS
T ss_pred CcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC
Confidence 2322222 22222111111 22221110 0112345666777777778888888888888 321
Q ss_pred CCCCHHHHHHHHHHHHh-CCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 005905 327 LKPTVSTMNALITALCD-GDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404 (670)
Q Consensus 327 ~~p~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 404 (670)
..+...|-.....-.. .++.+.|..+|+...+. + |+ ...+...++-..+.|+.+.|..+|+.+. .....+
T Consensus 316 -~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~-~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw 387 (493)
T 2uy1_A 316 -GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK-H-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMW 387 (493)
T ss_dssp -CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHH
T ss_pred -CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHH
Confidence 2233444322222222 23588888888887764 2 33 3344555666677888888888888762 235556
Q ss_pred HHHHHH
Q 005905 405 KCIIGM 410 (670)
Q Consensus 405 ~~li~~ 410 (670)
...++.
T Consensus 388 ~~~~~f 393 (493)
T 2uy1_A 388 DSMIEY 393 (493)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.14 E-value=3.5e-05 Score=78.24 Aligned_cols=122 Identities=9% Similarity=-0.042 Sum_probs=77.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005905 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD----------------HITIGALMKACANAGQVDRAREVYKM 216 (670)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd----------------~~t~~~li~~~~~~g~~~~A~~~~~~ 216 (670)
+...|..+...|.+.|++++|+..|++.... .|+ ...|..+..+|.+.|++++|...|+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~----~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 221 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW----LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNK 221 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3456777788888888888888888888764 333 25556666666666666666666666
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 005905 217 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 280 (670)
Q Consensus 217 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 280 (670)
..+.. +.+..+|..+..+|...|++++|...|++.++.... +...+..+..++...|+.++|
T Consensus 222 al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 222 ALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 66554 445566666666666666666666666666555432 445555555555555555555
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.14 E-value=1e-05 Score=73.45 Aligned_cols=120 Identities=13% Similarity=0.125 Sum_probs=69.5
Q ss_pred hcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhCCCh--hH
Q 005905 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA-LCDGDQL--PK 349 (670)
Q Consensus 273 ~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~--~~ 349 (670)
..|++++|...++...+.. +.+...+..+...|...|++++|...|++..+.. +.+...|..+... |...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 3455556666666555543 3445566666666666666666666666665543 2255556666666 5566666 67
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 350 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 395 (670)
|+..|++..+.. +-+...+..+...+...|++++|...|+++.+.
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 777776666531 223455556666666777777777777666654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.13 E-value=7.3e-06 Score=81.02 Aligned_cols=184 Identities=10% Similarity=-0.008 Sum_probs=119.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHH
Q 005905 225 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304 (670)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~ 304 (670)
+...+..+...+.+.|++++|...|++..+.... +...|..+..+|...|++++|...++...+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4567788888899999999999999998877543 77888888899999999999999999988765 556788888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 005905 305 ACSNAKNWQKALELYEHMKSIKLK----PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380 (670)
Q Consensus 305 ~~~~~g~~~~A~~~~~~m~~~~~~----p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 380 (670)
+|...|++++|...|++..+.... -+...+..+. .. ++. -+......-..++......+ ..+ ..|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~--~~------~~~-~~~~~~~~~~~~~~~i~~~l-~~l-~~~ 149 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR--IA------KKK-RWNSIEERRIHQESELHSYL-TRL-IAA 149 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH--HH------HHH-HHHHHHHTCCCCCCHHHHHH-HHH-HHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH--HH------HHH-HHHHHHHHHHhhhHHHHHHH-HHH-HHH
Confidence 999999999999999887653211 1112222221 11 111 12222233233444333333 332 368
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hhHHHHHHhHH
Q 005905 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS----RRYEKARTLNE 423 (670)
Q Consensus 381 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~----r~~~~a~~l~~ 423 (670)
+.++|++.++...+. .|+......-+.... +.++++..+++
T Consensus 150 ~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~ 194 (281)
T 2c2l_A 150 ERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFS 194 (281)
T ss_dssp HHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 888998888776654 466543333332221 24555555554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.10 E-value=6e-05 Score=73.23 Aligned_cols=201 Identities=10% Similarity=0.037 Sum_probs=125.9
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHH------------CCCC-----
Q 005905 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIA-------INCCSQTGDWEFACSVYDDMTK------------KGVI----- 258 (670)
Q Consensus 203 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~------------~g~~----- 258 (670)
..++...|.+.|.++.+.. +.....|+.+ ...+...++..+++..+..-.. .|.-
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4566777777777776665 4455666665 3444444444444444443332 1100
Q ss_pred ---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHH
Q 005905 259 ---PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT--VST 333 (670)
Q Consensus 259 ---p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~ 333 (670)
--......+...+...|++++|.++|..+...+ |+......+...|.+.+++++|+..|+...... .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 001233345566777888888888887776544 333355566668888899999998887554321 111 235
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005905 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPN--TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409 (670)
Q Consensus 334 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 409 (670)
+..+-.++.+.|++++|+..|++.......|. .........++.+.|+.++|..+|+++.... |+......|.+
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~aL~~ 249 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAALKD 249 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHHhC
Confidence 66778888899999999999998875333254 2344555667788899999999999888854 65555554443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.08 E-value=7.7e-05 Score=75.71 Aligned_cols=123 Identities=11% Similarity=-0.053 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005905 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGT--------------PEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256 (670)
Q Consensus 191 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 256 (670)
...+..+...|.+.|++++|...|++..+...... ..+|..+..+|.+.|++++|+..|++.++..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45667777788888888888888888877652221 3566666666666666666666666666554
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHH
Q 005905 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315 (670)
Q Consensus 257 ~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 315 (670)
.. +...|..+..+|...|++++|...|+.+.+.. +.+..++..+..++.+.|+.++|
T Consensus 227 p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 227 SN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 32 45556666666666666666666666665543 33445555566666666666555
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=0.0024 Score=63.70 Aligned_cols=219 Identities=13% Similarity=0.075 Sum_probs=151.6
Q ss_pred HhcCCH-HHHHHHHHHHhhCCCCCCCCHHH-HHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005905 165 GQSGAV-DRAFDVLAEMNAEVHPVDPDHIT-IGALMKACANAGQ----------VDRAREVYKMIHKYNIKGTPEVYTIA 232 (670)
Q Consensus 165 ~~~g~~-~~A~~l~~~m~~~~~~~~pd~~t-~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~~~~~~~~~l 232 (670)
.+.|.+ ++|+.+++.+... .|+..| |+.--..+...+. +++++.+++.+...+ +-+..+|+.-
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~----nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR 114 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA----NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHR 114 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT----CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH----CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 345554 5899999999864 666544 4433223322222 678889998888876 6678889887
Q ss_pred HHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc
Q 005905 233 INCCSQTG--DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK-VEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309 (670)
Q Consensus 233 i~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~-~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~ 309 (670)
.-++.+.+ ++++++.+++++.+.... |...|+.-.-++...|. .+++++.+..+.+.. +.|...|+.....+.+.
T Consensus 115 ~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 115 CWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp HHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHH
T ss_pred HHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHh
Confidence 77777777 489999999999988766 77788777777777887 589999999998876 66777777776666554
Q ss_pred --------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC-----------CChhHHHHHHHHHHhCCCCC
Q 005905 310 --------------KNWQKALELYEHMKSIKLKPTVSTMNALITALCDG-----------DQLPKTMEVLSDMKSLGLCP 364 (670)
Q Consensus 310 --------------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----------g~~~~A~~l~~~m~~~g~~p 364 (670)
+.++++.+.+....... +-|...|+.+-..+.+. +.++++++.++++.+. .|
T Consensus 193 ~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~p 269 (331)
T 3dss_A 193 HPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EP 269 (331)
T ss_dssp SCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CT
T ss_pred hhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Cc
Confidence 45788888888887765 34788888666555555 4577888888888873 56
Q ss_pred CHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHH
Q 005905 365 NTITYSILLV-----ACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 365 ~~~t~~~ll~-----a~~~~g~~~~a~~~~~~m~~ 394 (670)
|. .|..+-. +....|..++...++.++++
T Consensus 270 d~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 270 EN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp TC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred cc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 54 2322111 12234555566666665554
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.08 E-value=0.0035 Score=66.92 Aligned_cols=328 Identities=9% Similarity=-0.008 Sum_probs=171.6
Q ss_pred cC-CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC--CCCHHHHHHHHHHHHcCCC-HHHHHH
Q 005905 38 QG-RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMSVCASSKD-SEGAFQ 113 (670)
Q Consensus 38 ~g-~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~y~~li~~~~~~g~-~~~A~~ 113 (670)
.| +++.|..+|+.+...- |. ++++.+..+|++.. .|++..|...+....+.++ .+....
T Consensus 7 ~~~~i~~aR~vyer~l~~~--P~---------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLY--MS---------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp -----CCHHHHHHHHHHHH--HT---------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHH
T ss_pred cCcchHHHHHHHHHHHHHC--CC---------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHH
Confidence 45 3666777777665542 21 55677777776543 3677777776666555442 233444
Q ss_pred HHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHhhCCCCCC
Q 005905 114 VLRLVQEA-GLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACG----QSGAVDRAFDVLAEMNAEVHPVD 188 (670)
Q Consensus 114 ~~~~m~~~-g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~l~~~m~~~~~~~~ 188 (670)
+|+..+.. |..| .+...|...+.-+. ..++++.+..+|++.... +..
T Consensus 70 ~fe~al~~vg~d~--------------------------~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~ 121 (493)
T 2uy1_A 70 VYEFTLGQFENYW--------------------------DSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMG 121 (493)
T ss_dssp HHHHHHHHSTTCT--------------------------TCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCT
T ss_pred HHHHHHHHcCCCc--------------------------ccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhh
Confidence 55554442 2211 23344444443322 234566777777777652 111
Q ss_pred CCHHHHHHHHHHH-------------HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--C-----HHHHHHH
Q 005905 189 PDHITIGALMKAC-------------ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG--D-----WEFACSV 248 (670)
Q Consensus 189 pd~~t~~~li~~~-------------~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~-----~~~A~~l 248 (670)
--...|......- ...+.+..|..+++.+...--..+...|...+..-...+ - .+.+..+
T Consensus 122 ~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ 201 (493)
T 2uy1_A 122 SLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFI 201 (493)
T ss_dssp THHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHH
Confidence 0011121111100 011234455666655543210123456766665533221 1 3457789
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--
Q 005905 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK-- 326 (670)
Q Consensus 249 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-- 326 (670)
|++++.... .+...|...+..+.+.|+.+.|..+++..... +.+...+.. |+.....++ +++.+.+.-
T Consensus 202 ye~al~~~p-~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~---~~~~l~~~~~~ 271 (493)
T 2uy1_A 202 HNYILDSFY-YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEA---VYGDLKRKYSM 271 (493)
T ss_dssp HHHHHHHTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTH---HHHHHHHHTC-
T ss_pred HHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhH---HHHHHHHHHHh
Confidence 999887643 36788888888889999999999999999987 444333332 322211111 122222110
Q ss_pred ----------CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHC
Q 005905 327 ----------LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC-ERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 327 ----------~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~~~~~m~~~ 395 (670)
.......|-..+..+.+.+..+.|..+|++. ... .++...|......- ...++.+.|..+|+...+.
T Consensus 272 ~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~ 349 (493)
T 2uy1_A 272 GEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK 349 (493)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred hccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 0112345777777777788899999999999 321 23444454322221 2234799999999998874
Q ss_pred CCCCCHHHHHHHHHHHHh--hHHHHHHhHH
Q 005905 396 GVIPNLVMFKCIIGMCSR--RYEKARTLNE 423 (670)
Q Consensus 396 g~~p~~~~~~~li~~~~r--~~~~a~~l~~ 423 (670)
. .-+...+...++...+ ..++|..+.+
T Consensus 350 ~-~~~~~~~~~yid~e~~~~~~~~aR~l~e 378 (493)
T 2uy1_A 350 H-PDSTLLKEEFFLFLLRIGDEENARALFK 378 (493)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3 1223444445554332 3344444433
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00019 Score=59.18 Aligned_cols=95 Identities=16% Similarity=0.077 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005905 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 235 (670)
Q Consensus 156 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 235 (670)
.|..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD---PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 34444444444445555555444444321 1133334444444444444444444444444432 2233444444444
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 005905 236 CSQTGDWEFACSVYDDMTK 254 (670)
Q Consensus 236 ~~~~g~~~~A~~l~~~m~~ 254 (670)
|...|++++|...|++..+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 4444444444444444443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=1.4e-05 Score=70.43 Aligned_cols=97 Identities=9% Similarity=-0.066 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005905 296 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375 (670)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 375 (670)
...+..+...+.+.|++++|...|+...... +.+...|..+..+|...|++++|+..|++..... +-+...+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 3344455555555666666666665555443 2255555555555566666666666666555421 1233445555555
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 005905 376 CERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 376 ~~~~g~~~~a~~~~~~m~~ 394 (670)
+...|++++|...|+...+
T Consensus 99 ~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5566666666666655554
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.04 E-value=0.0002 Score=59.16 Aligned_cols=112 Identities=13% Similarity=0.010 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005905 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270 (670)
Q Consensus 191 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 270 (670)
...+..+...+...|++++|...|+...... +.+...+..+...|...|++++|...+++..+.... +...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 4567778888999999999999999998865 567888999999999999999999999999887543 67888889999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHH
Q 005905 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305 (670)
Q Consensus 271 ~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~ 305 (670)
+...|++++|.+.++...+.. +.+...+..+..+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 115 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQNM 115 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHh
Confidence 999999999999999998765 3445555555443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00021 Score=69.32 Aligned_cols=181 Identities=9% Similarity=0.034 Sum_probs=91.8
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-------HHHHhcCCHHHHHh------cCCC-------C----------
Q 005905 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLI-------TTCAKSGKVDAMFE------NVKP-------D---------- 153 (670)
Q Consensus 104 ~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li-------~~~~~~g~~~~~~~------~~~~-------~---------- 153 (670)
..++...|.+.|.++.+.. +-....|..++ ..+.+.++..+++. ++.| +
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 5788888888888888764 23455565552 22222222221111 0011 0
Q ss_pred -----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--H
Q 005905 154 -----RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT--P 226 (670)
Q Consensus 154 -----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~ 226 (670)
...+-.....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...... .|. .
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~----~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA----GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT----TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 223334555666667777777777666542 3443344444445666666666666665333211 110 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 005905 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD--EVFLSALIDFAGHAGKVEAAFEILQEAKNQ 290 (670)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~A~~i~~~m~~~ 290 (670)
.++..+-.++.+.|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 2455555566666666666666666553322132 123333444455556666666666655554
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=2.2e-05 Score=69.12 Aligned_cols=10 Identities=30% Similarity=0.664 Sum_probs=3.5
Q ss_pred CCHHHHHHHH
Q 005905 205 GQVDRAREVY 214 (670)
Q Consensus 205 g~~~~A~~~~ 214 (670)
|++++|...|
T Consensus 35 g~~~~A~~~~ 44 (148)
T 2vgx_A 35 GXYEDAHXVF 44 (148)
T ss_dssp TCHHHHHHHH
T ss_pred CChHHHHHHH
Confidence 3333333333
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=0.0033 Score=63.04 Aligned_cols=31 Identities=13% Similarity=0.327 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 329 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
+....+..|...|...|+.++|.++++.+.+
T Consensus 300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 300 PVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 4555666666666666666666666666653
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00026 Score=61.32 Aligned_cols=110 Identities=11% Similarity=0.010 Sum_probs=84.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 005905 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227 (670)
Q Consensus 152 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 227 (670)
.+...|..+...+...|++++|+..|++.... .|+ ...+..+...|...|++++|...++...+.. +.+..
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 100 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL----DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVK 100 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH----cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHH
Confidence 46777888888888999999999999988764 566 5667777788888888888888888887764 45677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005905 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267 (670)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 267 (670)
.+..+..+|...|++++|...|++..+.... +...+..+
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 139 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEAL 139 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHH
Confidence 8888888888888888888888888776432 34444333
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00015 Score=61.36 Aligned_cols=97 Identities=11% Similarity=-0.057 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005905 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 234 (670)
Q Consensus 155 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 234 (670)
..|..+...+.+.|++++|+..|++..... +.+...|..+..++.+.|++++|...|+...+.+ +.+..+|..+..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA---PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 456666777777788888888887776641 2345667777777777788888888777777765 455677777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 005905 235 CCSQTGDWEFACSVYDDMTKK 255 (670)
Q Consensus 235 ~~~~~g~~~~A~~l~~~m~~~ 255 (670)
+|...|++++|...|++..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHh
Confidence 777777777777777777654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=1.3e-05 Score=74.45 Aligned_cols=120 Identities=9% Similarity=-0.095 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 005905 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD---------------EVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291 (670)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---------------~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~ 291 (670)
..+..+...+.+.|++++|...|++..+....-. ...+..+..+|...|++++|...+....+..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3455555666666666666666666655322100 1334444444444444444444444444432
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChh
Q 005905 292 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348 (670)
Q Consensus 292 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 348 (670)
+.+...+..+..+|...|++++|...|++..+.. +.+...+..+..++...++.+
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~ 173 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEAR 173 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHH
Confidence 2233444444444444444444444444444332 113334444444443333333
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00018 Score=60.87 Aligned_cols=60 Identities=15% Similarity=0.088 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 005905 297 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357 (670)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 357 (670)
..|..+..+|.+.|++++|...|++..+.. +.+...|..+..+|...|++++|+..|++.
T Consensus 39 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 39 RGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAA 98 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 333344444444444444444444433332 112333334444444444444444444433
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0018 Score=67.79 Aligned_cols=198 Identities=8% Similarity=-0.008 Sum_probs=141.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-C
Q 005905 161 ITACGQSGAVDRAFDVLAEMNAEVHPVDPD---------------HITIGALMKACANAGQVDRAREVYKMIHKYNIK-G 224 (670)
Q Consensus 161 i~~~~~~g~~~~A~~l~~~m~~~~~~~~pd---------------~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~ 224 (670)
...+.+.|++++|++.|..+.+.... ..+ ...+..+...|...|++++|.+.+..+...--. +
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSS-QSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCC-SSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc-cchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 34577899999999999999875211 111 123677889999999999999999877553111 1
Q ss_pred CH----HHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC----
Q 005905 225 TP----EVYTIAINCCSQTGDWEFACSVYDDMTK----KGVIPD-EVFLSALIDFAGHAGKVEAAFEILQEAKNQG---- 291 (670)
Q Consensus 225 ~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~---- 291 (670)
+. .+.+.+-..+...|+++.|..++.+... .+..+. ..++..+...|...|++++|..+++++...-
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 11 2333444455567899999999988753 233333 4577788899999999999999999876431
Q ss_pred -CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 292 -ISVGIISYSSLMGACSNAKNWQKALELYEHMKSI----KLKPT--VSTMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 292 -~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
-+....++..++..|...|++++|..++++.... ...+. ...+..+...+...|++++|...|.+..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1223568889999999999999999999877532 21111 34567777788889999999988877654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00018 Score=66.60 Aligned_cols=124 Identities=7% Similarity=-0.144 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005905 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD--------------HITIGALMKACANAGQVDRAREVYKMIHK 219 (670)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd--------------~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 219 (670)
...+..+...+...|++++|+..|++..... +-.|+ ...+..+..+|...|++++|...++...+
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3456667777888888888888888877641 11111 14455555556666666666666666555
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 005905 220 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 280 (670)
Q Consensus 220 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 280 (670)
.. +.+..++..+..+|...|++++|...|++..+.... +...+..+..++...++.+++
T Consensus 117 ~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~ 175 (198)
T 2fbn_A 117 ID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKK 175 (198)
T ss_dssp HS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC-
T ss_pred hC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHH
Confidence 43 344555555666666666666666666655554322 344444444444444443333
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.0001 Score=60.25 Aligned_cols=98 Identities=10% Similarity=-0.024 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHH
Q 005905 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG--TPEVYTIA 232 (670)
Q Consensus 155 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~l 232 (670)
..|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|.+.|++..+.. +. +..++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD---PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC---cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 345555666666677777777776665531 2344556666666666666777766666666553 33 45666666
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHCC
Q 005905 233 INCCSQT-GDWEFACSVYDDMTKKG 256 (670)
Q Consensus 233 i~~~~~~-g~~~~A~~l~~~m~~~g 256 (670)
..+|.+. |++++|.+.|++..+..
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 6666666 66666666666666553
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00082 Score=70.42 Aligned_cols=197 Identities=11% Similarity=0.070 Sum_probs=140.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC
Q 005905 198 MKACANAGQVDRAREVYKMIHKYNIKGT----------------PEVYTIAINCCSQTGDWEFACSVYDDMTKKG-VIPD 260 (670)
Q Consensus 198 i~~~~~~g~~~~A~~~~~~m~~~~~~~~----------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~ 260 (670)
...+.+.|++++|.+.|..+.+...... ..++..+...|...|++++|.+.+.++...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4567889999999999999987542211 1347788999999999999999998876531 1122
Q ss_pred HH----HHHHHHHHHHhcCChHHHHHHHHHHHH----CCCC-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC
Q 005905 261 EV----FLSALIDFAGHAGKVEAAFEILQEAKN----QGIS-VGIISYSSLMGACSNAKNWQKALELYEHMKSI----KL 327 (670)
Q Consensus 261 ~~----t~~~li~~~~~~g~~~~A~~i~~~m~~----~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~ 327 (670)
.. +.+.+-..+...|+.+.|..++..... .+.. .-..++..+...|...|++++|..+++++... +-
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 22 222233334456889999999887754 2222 23567889999999999999999999987542 11
Q ss_pred CC-CHHHHHHHHHHHHhCCChhHHHHHHHHHHhC--CC-CC-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 328 KP-TVSTMNALITALCDGDQLPKTMEVLSDMKSL--GL-CP-N--TITYSILLVACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 328 ~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~-~p-~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 394 (670)
.+ ...+|..++..|...|++++|..++++.... .+ .| . ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 12 2557888999999999999999999887641 11 22 1 23455556667889999999998877654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00017 Score=62.59 Aligned_cols=94 Identities=20% Similarity=0.098 Sum_probs=46.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005905 157 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 236 (670)
Q Consensus 157 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 236 (670)
+..+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|...|+...+.+ +.++..+..+..+|
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLD---HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 3344444555555555555555554421 1233444444555555555555555555555443 33444455555555
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 005905 237 SQTGDWEFACSVYDDMTK 254 (670)
Q Consensus 237 ~~~g~~~~A~~l~~~m~~ 254 (670)
...|++++|...|++..+
T Consensus 97 ~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00031 Score=60.10 Aligned_cols=98 Identities=5% Similarity=-0.110 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005905 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 232 (670)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 232 (670)
+...|..+...+...|++++|+..|.+..... +.+...|..+..++...|++++|...|+...+.+ +.+..+|..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN---PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC---cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 44455555555555666666666665555431 2234455555555555556666655555555543 3345555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 005905 233 INCCSQTGDWEFACSVYDDMTK 254 (670)
Q Consensus 233 i~~~~~~g~~~~A~~l~~~m~~ 254 (670)
..+|...|++++|...|++..+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 5555555555555555555543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00031 Score=59.69 Aligned_cols=55 Identities=9% Similarity=0.100 Sum_probs=22.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005905 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252 (670)
Q Consensus 197 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 252 (670)
+...+.+.|++++|++.|++..+.. +.+..+|+.+..+|.+.|++++|+..|++.
T Consensus 14 lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 14 LGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 3334444444444444444433332 223333444444444444444444444433
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00027 Score=62.98 Aligned_cols=100 Identities=12% Similarity=0.082 Sum_probs=70.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005905 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 232 (670)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 232 (670)
+...|..+...|.+.|++++|+..|++..... +.+...|..+..+|.+.|++++|+..|+...+.. +.+..+|..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA---PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 34556667777777777777777777776641 2245666777777777777777777777777765 4556777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC
Q 005905 233 INCCSQTGDWEFACSVYDDMTKKG 256 (670)
Q Consensus 233 i~~~~~~g~~~~A~~l~~~m~~~g 256 (670)
..+|.+.|++++|...|++.++..
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC
Confidence 777777777777777777776543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00041 Score=59.39 Aligned_cols=98 Identities=13% Similarity=-0.075 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005905 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269 (670)
Q Consensus 190 d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~ 269 (670)
+...+..+...+...|++++|...|....+.. +.+..+|..+..+|...|++++|...|++..+.... +...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 44555566666666666666666666665544 344556666666666666666666666666554432 4455555555
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 005905 270 FAGHAGKVEAAFEILQEAKN 289 (670)
Q Consensus 270 ~~~~~g~~~~A~~i~~~m~~ 289 (670)
+|...|++++|...++...+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 55555666666555555543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00017 Score=60.90 Aligned_cols=27 Identities=11% Similarity=0.380 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005905 298 SYSSLMGACSNAKNWQKALELYEHMKS 324 (670)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 324 (670)
++..+..+|...|++++|.+.|+...+
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 334444444444444444444444443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00014 Score=59.38 Aligned_cols=27 Identities=15% Similarity=-0.117 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhC-CChhHHHHHHHHHH
Q 005905 332 STMNALITALCDG-DQLPKTMEVLSDMK 358 (670)
Q Consensus 332 ~~~~~li~~~~~~-g~~~~A~~l~~~m~ 358 (670)
..|..+...|... |++++|++.|++..
T Consensus 77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 77 DVWAAKADALRYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp HHHHHHHHHHTTCSSCSHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3333344444444 44444444444433
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00018 Score=60.77 Aligned_cols=108 Identities=11% Similarity=0.067 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCC----HHH
Q 005905 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI--KGT----PEV 228 (670)
Q Consensus 155 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~----~~~ 228 (670)
..|..+...|...|++++|...|++..... +.+...+..+...+...|++++|...++.+.+... .++ ..+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD---PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 456667777777777777777777776541 33455666677777777777777777777665431 112 556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005905 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267 (670)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 267 (670)
|..+..+|.+.|++++|...|++..+.. |+......+
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l 118 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKC 118 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHH
Confidence 6667777777777777777777776653 344444333
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00027 Score=61.35 Aligned_cols=96 Identities=16% Similarity=0.120 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005905 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272 (670)
Q Consensus 193 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 272 (670)
.+..+...+.+.|++++|...|+.....+ +.+...|..+..+|.+.|++++|...|++..+.... +...+..+..+|.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHH
Confidence 34445556666777777777777666654 455666666666777777777777777766665433 4455555666666
Q ss_pred hcCChHHHHHHHHHHHHC
Q 005905 273 HAGKVEAAFEILQEAKNQ 290 (670)
Q Consensus 273 ~~g~~~~A~~i~~~m~~~ 290 (670)
..|++++|...|+...+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666665543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00029 Score=59.93 Aligned_cols=56 Identities=13% Similarity=0.223 Sum_probs=23.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 005905 301 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357 (670)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 357 (670)
.+...|.+.|++++|...|++..+.. +.+...|+.+..+|...|++++|++.|++.
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 33444444444444444444443332 113334444444444444444444444443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00041 Score=61.83 Aligned_cols=99 Identities=13% Similarity=-0.005 Sum_probs=71.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005905 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269 (670)
Q Consensus 190 d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~ 269 (670)
+...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..|++.++.... +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34556667777777788888888887777765 456677777777777778888887777777766533 5666777777
Q ss_pred HHHhcCChHHHHHHHHHHHHC
Q 005905 270 FAGHAGKVEAAFEILQEAKNQ 290 (670)
Q Consensus 270 ~~~~~g~~~~A~~i~~~m~~~ 290 (670)
+|...|++++|...|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 777777777777777776654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0007 Score=58.55 Aligned_cols=96 Identities=13% Similarity=-0.023 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHH
Q 005905 226 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD----EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 301 (670)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~ 301 (670)
...+..+...+...|++++|...|++..+.. |+ ...+..+..+|...|++++|...++...+.. +.+...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 3444444445555555555555555544432 22 2344444444444455555555444444432 223444444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 005905 302 LMGACSNAKNWQKALELYEHMKS 324 (670)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~m~~ 324 (670)
+..+|...|++++|...|++..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555555555555555554443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=0.03 Score=55.73 Aligned_cols=185 Identities=5% Similarity=-0.026 Sum_probs=92.5
Q ss_pred hcCCHH-HHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhh----------HHHHHHHhhhC---CCCCHHHHHHHHHHH
Q 005905 37 RQGRIS-ECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA----------IKEAFRFFKLV---PNPTLSTFNMLMSVC 102 (670)
Q Consensus 37 ~~g~~~-~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~---~~~~~~~y~~li~~~ 102 (670)
+.|.++ +|+++++.+...+ |.+.+.-..-..+....+. +++++.+++.+ .+.+..+|+.-.-++
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 455554 6788888887766 5443322211111111111 45555555543 234555555555555
Q ss_pred HcCC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHH
Q 005905 103 ASSK--DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGA-VDRAFDVLAE 179 (670)
Q Consensus 103 ~~~g--~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~l~~~ 179 (670)
.+.+ .+++++..++.+.+.. +.|-.+|+.-.-.+...|. ++++++.++.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d----------------------------prNy~AW~~R~~vl~~l~~~~~eel~~~~~ 170 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD----------------------------ERNFHCWDYRRFVAAQAAVAPAEELAFTDS 170 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred hccCcccHHHHHHHHHHHHHhC----------------------------CCCHHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 5555 3556666666665543 1233333333333334444 4666666666
Q ss_pred HhhCCCCCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc------
Q 005905 180 MNAEVHPVDPDHITIGALMKACANA--------------GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT------ 239 (670)
Q Consensus 180 m~~~~~~~~pd~~t~~~li~~~~~~--------------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~------ 239 (670)
+.... .-|...|+-....+.+. +.++++++.+....... +.|..+|+-+-..+.+.
T Consensus 171 ~I~~~---p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 171 LITRN---FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHC---SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHC---CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCcccc
Confidence 66541 33444555444444333 34566666666666654 55666666544444443
Q ss_pred -----CCHHHHHHHHHHHHHC
Q 005905 240 -----GDWEFACSVYDDMTKK 255 (670)
Q Consensus 240 -----g~~~~A~~l~~~m~~~ 255 (670)
+.++++++.++++.+.
T Consensus 247 ~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhh
Confidence 2345555555555544
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00029 Score=59.36 Aligned_cols=94 Identities=6% Similarity=-0.150 Sum_probs=56.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005905 158 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 237 (670)
Q Consensus 158 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 237 (670)
..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..|++..+.+ +.+...+..+..+|.
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE---PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 344455666666666666666666531 2244555556666666666666666666666654 445556666666666
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 005905 238 QTGDWEFACSVYDDMTKK 255 (670)
Q Consensus 238 ~~g~~~~A~~l~~~m~~~ 255 (670)
+.|++++|...|++.++.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666666543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0011 Score=55.96 Aligned_cols=93 Identities=9% Similarity=-0.052 Sum_probs=65.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHH
Q 005905 159 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH----ITIGALMKACANAGQVDRAREVYKMIHKYNIKGT---PEVYTI 231 (670)
Q Consensus 159 ~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~----~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~ 231 (670)
.+...+...|++++|...|++.... .|+. ..+..+..++...|++++|...|+.+.+.. +.+ ..++..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~ 81 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHH
Confidence 3456677788888888888887764 2332 356667777778888888888887777654 333 566777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC
Q 005905 232 AINCCSQTGDWEFACSVYDDMTKKG 256 (670)
Q Consensus 232 li~~~~~~g~~~~A~~l~~~m~~~g 256 (670)
+..+|.+.|++++|...|+++.+..
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 7777778888888888888777654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00045 Score=58.15 Aligned_cols=95 Identities=9% Similarity=-0.060 Sum_probs=61.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005905 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273 (670)
Q Consensus 194 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~ 273 (670)
+..+...+.+.|++++|...|+...+.. +.+...|..+..++...|++++|+..|++..+.... +...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 3344556666777777777777776654 445666666777777777777777777776665433 45566666666666
Q ss_pred cCChHHHHHHHHHHHHC
Q 005905 274 AGKVEAAFEILQEAKNQ 290 (670)
Q Consensus 274 ~g~~~~A~~i~~~m~~~ 290 (670)
.|++++|...++...+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666666543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0003 Score=75.04 Aligned_cols=87 Identities=13% Similarity=0.011 Sum_probs=40.2
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 005905 164 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 243 (670)
Q Consensus 164 ~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 243 (670)
|.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|.+.+++..+.. +.+..+|..+..+|.+.|+++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN---PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 344455555555555544421 1123444444444555555555555554444433 333444444444444445555
Q ss_pred HHHHHHHHHHH
Q 005905 244 FACSVYDDMTK 254 (670)
Q Consensus 244 ~A~~l~~~m~~ 254 (670)
+|.+.|++..+
T Consensus 92 eA~~~~~~al~ 102 (477)
T 1wao_1 92 AALRDYETVVK 102 (477)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55544444443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00032 Score=61.56 Aligned_cols=97 Identities=14% Similarity=0.047 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhCCChhHHHHHHHHHHh----CCCCC-CHH
Q 005905 298 SYSSLMGACSNAKNWQKALELYEHMKSI----KLKP-TVSTMNALITALCDGDQLPKTMEVLSDMKS----LGLCP-NTI 367 (670)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p-~~~ 367 (670)
++..+...|...|++++|...|++..+. +..+ ....+..+...|...|++++|.+.+++..+ .+..+ ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4445555555555555555555554321 0000 133455555666666666666666665543 11111 123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 368 TYSILLVACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 368 t~~~ll~a~~~~g~~~~a~~~~~~m~~ 394 (670)
++..+...+...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 455556667777777777777766554
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00041 Score=60.82 Aligned_cols=129 Identities=16% Similarity=0.008 Sum_probs=53.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHH
Q 005905 194 IGALMKACANAGQVDRAREVYKMIHKYNIK-GT----PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI-PD----EVF 263 (670)
Q Consensus 194 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t 263 (670)
+..+...+...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++..+.... .+ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 334444444455555555555444332100 00 124444555555555555555555554321100 01 123
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC----CCC-ccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005905 264 LSALIDFAGHAGKVEAAFEILQEAKNQ----GIS-VGIISYSSLMGACSNAKNWQKALELYEHM 322 (670)
Q Consensus 264 ~~~li~~~~~~g~~~~A~~i~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m 322 (670)
+..+...+...|++++|...+++..+. +.. ....++..+...|...|++++|.+.+++.
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 333444444445555554444443321 100 01223444444445555555555554443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0033 Score=52.85 Aligned_cols=93 Identities=16% Similarity=0.088 Sum_probs=52.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHH
Q 005905 197 LMKACANAGQVDRAREVYKMIHKYNIKGTP---EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD--EVFLSALIDFA 271 (670)
Q Consensus 197 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~li~~~ 271 (670)
+...+...|++++|...|+.+.+.. +.+. .++..+..+|.+.|++++|...|++..+...... ...+..+..++
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3445556666666666666665543 2222 3555566666666666666666666655432210 34445555555
Q ss_pred HhcCChHHHHHHHHHHHHC
Q 005905 272 GHAGKVEAAFEILQEAKNQ 290 (670)
Q Consensus 272 ~~~g~~~~A~~i~~~m~~~ 290 (670)
...|++++|...++.+.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 5666666666666655554
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00084 Score=71.18 Aligned_cols=120 Identities=8% Similarity=-0.071 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005905 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD----------------HITIGALMKACANAGQVDRAREVYKMI 217 (670)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd----------------~~t~~~li~~~~~~g~~~~A~~~~~~m 217 (670)
...|..+...|.+.|++++|+..|++.... .|+ ...|..+..+|.+.|++++|+..|+++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~----~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 343 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW----LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 343 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH----hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 345677777888888888888888887763 222 244445555555555555555555555
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 005905 218 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 279 (670)
Q Consensus 218 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 279 (670)
.+.. +.+...|..+..+|...|++++|...|++.++.... +...+..+..++.+.++.++
T Consensus 344 l~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 344 LGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHH
T ss_pred HhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 5443 334445555555555555555555555555443221 22334444444444444433
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00026 Score=75.54 Aligned_cols=119 Identities=12% Similarity=0.039 Sum_probs=74.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHH
Q 005905 234 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313 (670)
Q Consensus 234 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 313 (670)
..|.+.|++++|.+.|++..+.... +...|..+..+|.+.|++++|.+.+++..+.. +.+..++..+..+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 3445667777777777776665432 46666677777777777777777777777664 445667777777777778888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhCCChhHHHHHHH
Q 005905 314 KALELYEHMKSIKLKPTVSTMNALITA--LCDGDQLPKTMEVLS 355 (670)
Q Consensus 314 ~A~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~l~~ 355 (670)
+|.+.|++..+... .+...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88777777765432 133344444444 667777888888777
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0013 Score=69.79 Aligned_cols=88 Identities=9% Similarity=-0.071 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005905 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 341 (670)
Q Consensus 262 ~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 341 (670)
..|..+..+|.+.|++++|+..++.+.+.. +.+...|..+..+|...|++++|...|++..+... .+...+..+..++
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 445555555666666666666666655543 33455566666666666666666666666655432 2444555566666
Q ss_pred HhCCChhHHH
Q 005905 342 CDGDQLPKTM 351 (670)
Q Consensus 342 ~~~g~~~~A~ 351 (670)
.+.++.++|.
T Consensus 396 ~~~~~~~~a~ 405 (457)
T 1kt0_A 396 KKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666655554
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0011 Score=68.06 Aligned_cols=85 Identities=12% Similarity=0.011 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHH
Q 005905 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306 (670)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~ 306 (670)
.+|..+..+|.+.|++++|+..+++.++.... +...+..+..+|...|++++|...|+...+.. +.+...+..+...+
T Consensus 274 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 274 SCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34444444444445555555555444443221 33344444444444444444444444444432 22333333333333
Q ss_pred HhcCCHH
Q 005905 307 SNAKNWQ 313 (670)
Q Consensus 307 ~~~g~~~ 313 (670)
...++.+
T Consensus 352 ~~~~~~~ 358 (370)
T 1ihg_A 352 QKIKAQK 358 (370)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0014 Score=58.06 Aligned_cols=62 Identities=13% Similarity=0.029 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 297 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
.+|..+..+|.+.|++++|...++...+.. +.+...|..+..+|...|++++|+..|++..+
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 344555555555555555555555554443 22444555555555555555555555555444
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0013 Score=67.49 Aligned_cols=126 Identities=6% Similarity=-0.026 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC------------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 005905 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVH------------PVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYN 221 (670)
Q Consensus 155 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~------------~~~p-d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~ 221 (670)
..|..+...|.+.|++++|+..|++..+... ...| +...|..+..+|.+.|++++|++.+++..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 4577778888899999999999988875100 0122 34678888889999999999999999999876
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 005905 222 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 282 (670)
Q Consensus 222 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 282 (670)
+.+..+|..+..+|...|++++|+..|++..+.... +...+..+..++...++.+++.+
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999999887543 66677777777766666665543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0018 Score=56.68 Aligned_cols=94 Identities=14% Similarity=0.043 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC--------H-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Q 005905 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD--------H-----ITIGALMKACANAGQVDRAREVYKMIHKY-- 220 (670)
Q Consensus 156 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd--------~-----~t~~~li~~~~~~g~~~~A~~~~~~m~~~-- 220 (670)
.+......+.+.|++++|+..|++..+. .|+ . ..|..+..++.+.|++++|+..|+...+.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l----~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI----SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH----HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh----CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 3455666777888888888888887764 333 2 26677777777777777777777777665
Q ss_pred -----CCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 221 -----NIKGTPEVY----TIAINCCSQTGDWEFACSVYDDMTK 254 (670)
Q Consensus 221 -----~~~~~~~~~----~~li~~~~~~g~~~~A~~l~~~m~~ 254 (670)
+ +.+...| .....++...|++++|+..|++.++
T Consensus 89 ~~~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 89 RRGELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHCCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3 3344556 6666677777777777777776654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00026 Score=59.04 Aligned_cols=84 Identities=13% Similarity=0.027 Sum_probs=36.9
Q ss_pred CChHHHHHHHHHHHHCC--CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHH
Q 005905 275 GKVEAAFEILQEAKNQG--ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 352 (670)
Q Consensus 275 g~~~~A~~i~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 352 (670)
|++++|...|++..+.+ -+.+..++..+..+|...|++++|...|++..+..+ -+...+..+..+|...|++++|+.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHHHH
Confidence 34444444444444432 122233444444455555555555555555444331 134444444555555555555555
Q ss_pred HHHHHHh
Q 005905 353 VLSDMKS 359 (670)
Q Consensus 353 l~~~m~~ 359 (670)
.|++...
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0027 Score=56.21 Aligned_cols=61 Identities=21% Similarity=0.119 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005905 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289 (670)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~ 289 (670)
+|..+..+|.+.|++++|+..+++.++.... +...|..+..+|...|++++|...|....+
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 3444444444444444444444444443321 334444444444444444444444444443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0073 Score=65.61 Aligned_cols=174 Identities=9% Similarity=-0.029 Sum_probs=127.9
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005905 168 GAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQ----------VDRAREVYKMIHKYNIKGTPEVYTIAINCC 236 (670)
Q Consensus 168 g~~~~A~~l~~~m~~~~~~~~pd-~~t~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 236 (670)
...++|++.++++... .|+ ...|+.--.++...|+ ++++.+.++.+.+.+ +-+..+|+.-.-++
T Consensus 43 ~~~eeal~~~~~~l~~----nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l 117 (567)
T 1dce_A 43 ELDESVLELTSQILGA----NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 117 (567)
T ss_dssp CCSHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH----CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3457889999988874 455 3456655555666666 888999998888876 56778888888888
Q ss_pred HhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc----
Q 005905 237 SQTG--DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG-KVEAAFEILQEAKNQGISVGIISYSSLMGACSNA---- 309 (670)
Q Consensus 237 ~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g-~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~---- 309 (670)
.+.+ +++++++.++++.+.... |...|+.---++.+.| ..+++++.+..+.+.. +-+...|+.....+.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCC
T ss_pred HHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccc
Confidence 8888 678999999999888765 7777877777777778 7888888888887765 55677777776666553
Q ss_pred ----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhH
Q 005905 310 ----------KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349 (670)
Q Consensus 310 ----------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 349 (670)
+.++++.+.+.+.....+ -|...|+.+-..+.+.++.++
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~P-~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHCS-SCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccccHHHHHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCCccc
Confidence 456788888877776553 367778777777777666444
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00032 Score=58.51 Aligned_cols=87 Identities=11% Similarity=-0.022 Sum_probs=41.6
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005905 167 SGAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245 (670)
Q Consensus 167 ~g~~~~A~~l~~~m~~~~~~~~p-d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 245 (670)
.|++++|+..|++..+.+.. .| +...+..+...|...|++++|...|++..+.. +.+..++..+..+|.+.|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQ-GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCC-CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 35555555555555542100 12 23344445555555555555555555555543 33445555555555555555555
Q ss_pred HHHHHHHHHC
Q 005905 246 CSVYDDMTKK 255 (670)
Q Consensus 246 ~~l~~~m~~~ 255 (670)
...|++..+.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00056 Score=69.31 Aligned_cols=149 Identities=10% Similarity=-0.029 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005905 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 233 (670)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 233 (670)
...|..+...|.+.|++++|+..|.+.... .|+... +...|+.+++...+ . ..+|+.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~----~p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nla 237 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY----MGDDFM-------FQLYGKYQDMALAV---K-------NPCHLNIA 237 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH----SCHHHH-------HTCCHHHHHHHHHH---H-------THHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH----hccchh-------hhhcccHHHHHHHH---H-------HHHHHHHH
Confidence 445777788888999999999999998763 455332 11222333332221 1 13667777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHH-HHhcCCH
Q 005905 234 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA-CSNAKNW 312 (670)
Q Consensus 234 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~-~~~~g~~ 312 (670)
.+|.+.|++++|+..|++.++.... +...|..+..+|...|++++|...|+...+.. +.+..++..+... ....+..
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 238 ACLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888877766432 66677777778888888888888887776543 2234445444444 2334566
Q ss_pred HHHHHHHHHHHhC
Q 005905 313 QKALELYEHMKSI 325 (670)
Q Consensus 313 ~~A~~~~~~m~~~ 325 (670)
+.+..+|..|...
T Consensus 316 ~~a~~~~~~~l~~ 328 (338)
T 2if4_A 316 QKQKEMYKGIFKG 328 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHHhhCC
Confidence 7777777777644
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0012 Score=66.99 Aligned_cols=145 Identities=10% Similarity=-0.010 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHH
Q 005905 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307 (670)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~ 307 (670)
.+..+...+.+.|++++|...|++.++.. |+... +...++.+++...+. ..+|..+..+|.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 35555566666777777777777665542 22221 112222222222111 125566666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHH-HHhcCCHHHH
Q 005905 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI-TYSILLVA-CERKDDVEVG 385 (670)
Q Consensus 308 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a-~~~~g~~~~a 385 (670)
+.|++++|...|++..+.. +.+...|..+..+|...|++++|+..|++..+ +.|+.. .+..+... ....+..+.+
T Consensus 242 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777776666543 23566666667777777777777777766654 234332 22222222 1234455666
Q ss_pred HHHHHHHHH
Q 005905 386 LMLLSQAKE 394 (670)
Q Consensus 386 ~~~~~~m~~ 394 (670)
..+|..|..
T Consensus 319 ~~~~~~~l~ 327 (338)
T 2if4_A 319 KEMYKGIFK 327 (338)
T ss_dssp ---------
T ss_pred HHHHHHhhC
Confidence 666666654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0025 Score=67.61 Aligned_cols=63 Identities=6% Similarity=-0.079 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCC-C-CHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 297 ISYSSLMGACSNAKNWQKALELYEHMKS-----IKLK-P-TVSTMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
.+++.|...|...|++++|+.+|++..+ .|.. | ...+.+.+-.++...+++++|..+|.++++
T Consensus 394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 394 MAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555444332 1211 1 122233344444455555555555555544
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.002 Score=68.41 Aligned_cols=123 Identities=8% Similarity=-0.013 Sum_probs=82.9
Q ss_pred hcCChHHHHHHHHHHHHC-----C--CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CC-CHHHHHHHH
Q 005905 273 HAGKVEAAFEILQEAKNQ-----G--ISVGIISYSSLMGACSNAKNWQKALELYEHMKS-----IKL-KP-TVSTMNALI 338 (670)
Q Consensus 273 ~~g~~~~A~~i~~~m~~~-----~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~-~p-~~~~~~~li 338 (670)
..|++++|..++++..+. | .+....+++.|...|...|++++|..++++..+ .|. .| ...+++.|.
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 566777777776665432 1 112346788888888888888888888877653 221 12 346688888
Q ss_pred HHHHhCCChhHHHHHHHHHHh-----CCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 339 TALCDGDQLPKTMEVLSDMKS-----LGL-CPNT-ITYSILLVACERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 339 ~~~~~~g~~~~A~~l~~~m~~-----~g~-~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 395 (670)
..|...|++++|+.++++..+ .|- .|+. .+...+-.++...+.+++|...|.++++.
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999988888653 231 1322 33445555667788889999988888763
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0076 Score=52.74 Aligned_cols=62 Identities=10% Similarity=-0.071 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------CHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKG------TPE-----VYTIAINCCSQTGDWEFACSVYDDMTK 254 (670)
Q Consensus 193 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~------~~~-----~~~~li~~~~~~g~~~~A~~l~~~m~~ 254 (670)
.+......+.+.|++++|...|++..+..... +.. .|+.+..++.+.|++++|+..|++.++
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455666777788888888887777654221 222 555555555566666666655555544
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.018 Score=49.45 Aligned_cols=79 Identities=13% Similarity=0.030 Sum_probs=31.9
Q ss_pred CChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCC
Q 005905 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQ 346 (670)
Q Consensus 275 g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~ 346 (670)
+..++|.+.|+...+.| +...+..|..+|.. .+++++|.+.|++..+.| +...+..|-..|.. .++
T Consensus 39 ~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d 112 (138)
T 1klx_A 39 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 112 (138)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred CCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcC
Confidence 33344444444444332 23333334444443 344444444444444322 33333444444443 344
Q ss_pred hhHHHHHHHHHHh
Q 005905 347 LPKTMEVLSDMKS 359 (670)
Q Consensus 347 ~~~A~~l~~~m~~ 359 (670)
.++|++.|++..+
T Consensus 113 ~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 113 EKQAVKTFEKACR 125 (138)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.034 Score=60.34 Aligned_cols=169 Identities=8% Similarity=-0.031 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-
Q 005905 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD----------WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG- 275 (670)
Q Consensus 207 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g- 275 (670)
.++|.+.++.+...+ +.+..+|+.--.++...|+ ++++++.++++.+...+ +..+|..-.-++.+.+
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 457788888888776 5566777776666666666 78888888888777655 6667766666667777
Q ss_pred -ChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC---------
Q 005905 276 -KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK-NWQKALELYEHMKSIKLKPTVSTMNALITALCDG--------- 344 (670)
Q Consensus 276 -~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------- 344 (670)
+++++++.++.+.+.. +-+..+|+.-...+.+.| .++++.+.++++.+..+ -|...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhccccccccc
Confidence 5578888888877765 446677777666677777 77777777777776653 3677777666655542
Q ss_pred -----CChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 005905 345 -----DQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDD 381 (670)
Q Consensus 345 -----g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~ 381 (670)
+.++++++.+++.... .| |...|..+-..+.+.+.
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCC
T ss_pred ccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCC
Confidence 3345666666555542 23 33444443333444333
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.027 Score=48.20 Aligned_cols=110 Identities=12% Similarity=-0.033 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHH
Q 005905 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH----AGKVEAAF 281 (670)
Q Consensus 206 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~ 281 (670)
++++|.+.|++..+.+ .+... |-..|...+..++|.+.|++..+.| +...+..|-..|.. .++.++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3444555554444444 22211 3334444444444555555554443 33444444444444 45555555
Q ss_pred HHHHHHHHCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 005905 282 EILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIK 326 (670)
Q Consensus 282 ~i~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 326 (670)
+.|+...+.| +...+..|..+|.. .+++++|...|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555555543 24444455555555 555556655555555443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00077 Score=55.06 Aligned_cols=91 Identities=8% Similarity=-0.000 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC------H
Q 005905 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT------P 226 (670)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~------~ 226 (670)
+...|..+...+...|++++|+..|++..... +.+...+..+..++...|++++|.+.|+...+.. +.+ .
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~ 78 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ---PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRS 78 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHH
Confidence 34556666777777777777777777776541 2345566666677777777777777777776654 222 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHH
Q 005905 227 EVYTIAINCCSQTGDWEFACS 247 (670)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~ 247 (670)
.++..+..++...|+.+.|..
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHHHHhHhhhHh
Confidence 444444555555554444443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0014 Score=53.36 Aligned_cols=60 Identities=10% Similarity=0.031 Sum_probs=26.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005905 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324 (670)
Q Consensus 264 ~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 324 (670)
+..+...+...|++++|...++...+.. +.+..++..+..+|.+.|++++|...|++..+
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3333444444444444444444444332 22334444444444444444444444444443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.013 Score=45.47 Aligned_cols=60 Identities=22% Similarity=0.238 Sum_probs=26.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254 (670)
Q Consensus 194 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 254 (670)
+..+...+...|++++|...|++..+.. +.+..++..+..+|.+.|++++|...|++..+
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3333444444444444444444444332 22334444444444444444444444444443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.012 Score=45.65 Aligned_cols=83 Identities=18% Similarity=0.104 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005905 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 233 (670)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 233 (670)
...|..+...|...|++++|+..|++..... +.+...+..+...+...|++++|...|++..+.. +.+..++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~ 84 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 4577888889999999999999999998752 3356778888999999999999999999998875 55677777777
Q ss_pred HHHHhcC
Q 005905 234 NCCSQTG 240 (670)
Q Consensus 234 ~~~~~~g 240 (670)
.++.+.|
T Consensus 85 ~~~~~~g 91 (91)
T 1na3_A 85 NAKQKQG 91 (91)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 7665543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.011 Score=48.62 Aligned_cols=80 Identities=15% Similarity=0.050 Sum_probs=57.7
Q ss_pred HHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005905 172 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251 (670)
Q Consensus 172 ~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 251 (670)
+|+..|++..+.. +.+...+..+...|...|++++|...|+...+.. +.+..+|..+..+|...|++++|...|++
T Consensus 3 ~a~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQG---TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTTT---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC---CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4566777766541 2345667777777888888888888888777765 45567777788888888888888888877
Q ss_pred HHHC
Q 005905 252 MTKK 255 (670)
Q Consensus 252 m~~~ 255 (670)
..+.
T Consensus 79 al~~ 82 (115)
T 2kat_A 79 GLAA 82 (115)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7653
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0095 Score=48.98 Aligned_cols=78 Identities=8% Similarity=-0.090 Sum_probs=42.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005905 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289 (670)
Q Consensus 210 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~ 289 (670)
|...|+...+.. +.+...+..+...|...|++++|...|++..+.... +...|..+..+|...|++++|...|+...+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555443 344555666666666666666666666665554322 344555555555555555555555555443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.012 Score=51.42 Aligned_cols=100 Identities=8% Similarity=0.037 Sum_probs=70.4
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005905 165 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV----------DRAREVYKMIHKYNIKGTPEVYTIAIN 234 (670)
Q Consensus 165 ~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~----------~~A~~~~~~m~~~~~~~~~~~~~~li~ 234 (670)
.+.+.+++|++.++...+.. +.+...|..+..++...+++ ++|+..|++..+.+ +.+..+|..+-.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~---P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ 88 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN---PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 34556888888888887752 33566777777777777654 58888888888876 556778888888
Q ss_pred HHHhcC-----------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005905 235 CCSQTG-----------DWEFACSVYDDMTKKGVIPDEVFLSALIDF 270 (670)
Q Consensus 235 ~~~~~g-----------~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 270 (670)
+|...| ++++|+..|++.++. .|+...|...+..
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~ 133 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 887764 788888888887776 3455555444443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0033 Score=54.91 Aligned_cols=29 Identities=14% Similarity=0.308 Sum_probs=16.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005905 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 410 (670)
Q Consensus 380 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 410 (670)
|++++|.+.|++.++. .|+...|...+.+
T Consensus 105 g~~~eA~~~~~kAl~l--~P~~~~y~~al~~ 133 (158)
T 1zu2_A 105 HNFDLATQFFQQAVDE--QPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3566666666666553 3555566555555
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.012 Score=47.02 Aligned_cols=63 Identities=16% Similarity=0.093 Sum_probs=37.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 005905 295 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358 (670)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 358 (670)
+...+..+...|.+.|++++|...|++..+... .+...|..+..+|...|++++|++.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345555666666666666666666666655432 244556666666666666666666666544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.25 E-value=0.19 Score=56.97 Aligned_cols=149 Identities=13% Similarity=0.081 Sum_probs=80.1
Q ss_pred hhhhHHHHHH-HhhhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhc--
Q 005905 73 SQKAIKEAFR-FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN-- 149 (670)
Q Consensus 73 ~~~~~~~A~~-~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~-- 149 (670)
..+++++|.+ ++..++ +......++..+.+.|.++.|+++.++ .. .-...+..+|+++.|++.
T Consensus 611 ~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~A~~~~~ 676 (814)
T 3mkq_A 611 LRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTLARDLLT 676 (814)
T ss_dssp HTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHHHHHHHT
T ss_pred HhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHHHHHHHH
Confidence 3455666655 443332 011225555566666666666654421 10 112334556666666653
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 005905 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229 (670)
Q Consensus 150 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 229 (670)
.-.+...|..+...+.+.|+++.|.++|.++.. |..+...+...|+.+...++-+.....|- +
T Consensus 677 ~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~ 739 (814)
T 3mkq_A 677 DESAEMKWRALGDASLQRFNFKLAIEAFTNAHD-----------LESLFLLHSSFNNKEGLVTLAKDAETTGK------F 739 (814)
T ss_dssp TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------H
T ss_pred hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------h
Confidence 234667777777777777777777777777642 23344444456666655555554444431 3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 005905 230 TIAINCCSQTGDWEFACSVYDDM 252 (670)
Q Consensus 230 ~~li~~~~~~g~~~~A~~l~~~m 252 (670)
+....+|.+.|++++|.+++.++
T Consensus 740 ~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 740 NLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHc
Confidence 34444455566666666655443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.026 Score=45.12 Aligned_cols=61 Identities=13% Similarity=0.053 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005905 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253 (670)
Q Consensus 192 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 253 (670)
..+..+...|...|++++|...|+...+.+ +.+..+|..+..+|.+.|++++|...|++..
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444445555555555555555544443 2333445555555555555555555554443
|
| >3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1 | Back alignment and structure |
|---|
Probab=95.94 E-value=0.014 Score=44.78 Aligned_cols=78 Identities=14% Similarity=0.225 Sum_probs=48.0
Q ss_pred eeccccCcchhhHHHHHHHHHHHHHhhhhCCCCCCceEeccCccceeecCCCcchhhhhHhhhHHHHHHHHHhCCCCCCC
Q 005905 535 VVDARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQGN 614 (670)
Q Consensus 535 ~~~~~~~~~~~~~i~~l~~l~~l~~~~~~~~~~p~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~p~~~~ 614 (670)
.+|+++++...|.-.+...|..-..+.......+.+ .|+||+|.|+..-...|+.+|...|++.+..|.+
T Consensus 2 ~lDLHGl~v~eA~~~l~~~l~~~~~~~~~~~g~~~v---------~II~GkG~hS~~g~~~Lk~~V~~~L~~~~~~~~e- 71 (82)
T 3fau_A 2 SLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYL---------SVITGRGNHSQGGVARIKPAVIKYLISHSFRFSE- 71 (82)
T ss_dssp CEECTTSCHHHHHHHHHHHHHHHHHHHHHHCCCCEE---------EEECCC---------CHHHHHHHHHHHTTCCEEE-
T ss_pred eEECCCCcHHHHHHHHHHHHHHHHHHhhccCCceEE---------EEEECCCCCCCCCcchHHHHHHHHHHhCCCceee-
Confidence 479999999888777666666554433332234433 5788999886432234999999999998888742
Q ss_pred CccceEEe
Q 005905 615 GSYGKIRI 622 (670)
Q Consensus 615 ~~~g~~~~ 622 (670)
...|.|.+
T Consensus 72 ~n~G~l~V 79 (82)
T 3fau_A 72 IKPGCLKV 79 (82)
T ss_dssp EETTEEEE
T ss_pred CCCEEEEE
Confidence 13388875
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=95.58 E-value=0.15 Score=51.15 Aligned_cols=72 Identities=10% Similarity=-0.064 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 005905 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404 (670)
Q Consensus 329 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 404 (670)
.+..+|..+...+...|++++|...+++.... .|+...|..+-..+.-.|++++|...|++.... .|...+|
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 34555555544444445555555555555553 255544544444555555555555555555543 2444443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.041 Score=57.24 Aligned_cols=85 Identities=13% Similarity=0.106 Sum_probs=48.5
Q ss_pred cCChHHHHHHHHHHHHC---CCCc----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CC-CHHHHHHHHH
Q 005905 274 AGKVEAAFEILQEAKNQ---GISV----GIISYSSLMGACSNAKNWQKALELYEHMKS-----IKL-KP-TVSTMNALIT 339 (670)
Q Consensus 274 ~g~~~~A~~i~~~m~~~---~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~-~p-~~~~~~~li~ 339 (670)
.|++++|..++++..+. -+.+ ...+++.|..+|...|++++|+.++++..+ .|. .| ...+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45666666666665432 1111 235666777777777777777777666542 121 11 2345666666
Q ss_pred HHHhCCChhHHHHHHHHHH
Q 005905 340 ALCDGDQLPKTMEVLSDMK 358 (670)
Q Consensus 340 ~~~~~g~~~~A~~l~~~m~ 358 (670)
.|...|++++|+.++++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 6666666666666666544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.11 Score=54.03 Aligned_cols=86 Identities=17% Similarity=0.091 Sum_probs=41.4
Q ss_pred HcCCHHHHHHHHHHHHHcC---CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCC-HHHHHHHH
Q 005905 203 NAGQVDRAREVYKMIHKYN---IKG----TPEVYTIAINCCSQTGDWEFACSVYDDMTKK-----GV-IPD-EVFLSALI 268 (670)
Q Consensus 203 ~~g~~~~A~~~~~~m~~~~---~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~-~p~-~~t~~~li 268 (670)
+.|++++|+.++++..+.. +.+ ...+++.+..+|...|++++|+.++++.++. |. .|+ ..+++.|.
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 3455555555555554321 111 1234555555555556666555555554421 11 111 23455555
Q ss_pred HHHHhcCChHHHHHHHHHHH
Q 005905 269 DFAGHAGKVEAAFEILQEAK 288 (670)
Q Consensus 269 ~~~~~~g~~~~A~~i~~~m~ 288 (670)
..|...|++++|..++++..
T Consensus 379 ~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHH
Confidence 55666666666665555543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.08 Score=55.09 Aligned_cols=86 Identities=15% Similarity=0.074 Sum_probs=37.4
Q ss_pred HHhcCChHHHHHHHHHHHHCC---CCc----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CC-CHHHHHH
Q 005905 271 AGHAGKVEAAFEILQEAKNQG---ISV----GIISYSSLMGACSNAKNWQKALELYEHMKS-----IKL-KP-TVSTMNA 336 (670)
Q Consensus 271 ~~~~g~~~~A~~i~~~m~~~~---~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~-~p-~~~~~~~ 336 (670)
+.+.|++++|..++++..+.. +.+ ...+++.|..+|...|++++|+.++++..+ .|. .| ...+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 334455555555555544321 111 123455555555555555555555554432 110 01 1233444
Q ss_pred HHHHHHhCCChhHHHHHHHH
Q 005905 337 LITALCDGDQLPKTMEVLSD 356 (670)
Q Consensus 337 li~~~~~~g~~~~A~~l~~~ 356 (670)
|...|...|++++|+.++++
T Consensus 377 La~~~~~~g~~~eA~~~~~~ 396 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRL 396 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHH
Confidence 44444444444444444444
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=95.28 E-value=1.1 Score=44.70 Aligned_cols=74 Identities=8% Similarity=-0.103 Sum_probs=49.8
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHH
Q 005905 293 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370 (670)
Q Consensus 293 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 370 (670)
+.+..+|.++..++...|++++|...+++....+ |+...|..+-..+...|++++|.+.|++... +.|...||.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHH
Confidence 4456666666666666677777777777777663 5666666666677777777777777777665 356666653
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.046 Score=56.85 Aligned_cols=62 Identities=19% Similarity=0.128 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005905 227 EVYTIAINCCSQTGDWEFACSVYDDMTKK-----GV-IPD-EVFLSALIDFAGHAGKVEAAFEILQEAK 288 (670)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~-~p~-~~t~~~li~~~~~~g~~~~A~~i~~~m~ 288 (670)
.+++.|..+|...|++++|..++++.++. |. .|+ ..+++.|...|...|++++|..++++..
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 34556666666666666666666655431 21 111 2345566666666666666666666554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.14 Score=40.13 Aligned_cols=54 Identities=19% Similarity=0.314 Sum_probs=23.2
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 201 CANAGQVDRAREVYKMIHKYNIKGTPE-VYTIAINCCSQTGDWEFACSVYDDMTKK 255 (670)
Q Consensus 201 ~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~ 255 (670)
+.+.|++++|.+.|+.+.+.. +.+.. .|..+..+|...|++++|...|++..+.
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 334444444444444444432 22333 4444444444444444444444444433
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.064 Score=42.26 Aligned_cols=65 Identities=18% Similarity=0.260 Sum_probs=52.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 005905 160 LITACGQSGAVDRAFDVLAEMNAEVHPVDP-DHI-TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229 (670)
Q Consensus 160 li~~~~~~g~~~~A~~l~~~m~~~~~~~~p-d~~-t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 229 (670)
....+.+.|++++|+..|++.... .| +.. .+..+..++...|++++|.+.|+...+.. +.+..++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT----EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN-PDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH----CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH----CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHH
Confidence 456788899999999999999875 34 456 78888899999999999999999998876 3344444
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=94.40 E-value=0.66 Score=52.48 Aligned_cols=76 Identities=17% Similarity=0.208 Sum_probs=39.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc
Q 005905 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309 (670)
Q Consensus 230 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~ 309 (670)
..++..+.+.|.++.|+++.+.-. .-...+...|+++.|+++.+.+ .+...|..+..++.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 445555555555555554442110 0012234456666666554322 2345666666666666
Q ss_pred CCHHHHHHHHHHHH
Q 005905 310 KNWQKALELYEHMK 323 (670)
Q Consensus 310 g~~~~A~~~~~~m~ 323 (670)
|+++.|.+.|..+.
T Consensus 695 ~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 695 FNFKLAIEAFTNAH 708 (814)
T ss_dssp TCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHcc
Confidence 66666666666554
|
| >2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1 | Back alignment and structure |
|---|
Probab=94.13 E-value=0.2 Score=39.57 Aligned_cols=80 Identities=15% Similarity=0.235 Sum_probs=55.0
Q ss_pred CeeeccccCcchhhHHHHHHHHHHHHHhhhhCCCCCCceEeccCccceeecCCCcchhhhhHhhhHHHHHHHHHhCCCCC
Q 005905 533 PVVVDARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQ 612 (670)
Q Consensus 533 ~~~~~~~~~~~~~~~i~~l~~l~~l~~~~~~~~~~p~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~p~~ 612 (670)
...+|+++++...|.-.+..+|.............+.+ .|+||+|.|+..-.+.|+++|...|++.+..|.
T Consensus 8 ~~~lDLHGl~v~eA~~~L~~~L~~~~~~~~~~~g~~~v---------~IIhGkG~hS~~g~~~Lk~~V~~~L~~~~~~~~ 78 (96)
T 2d9i_A 8 QNVLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYL---------SVITGRGNHSQGGVARIKPAVIKYLISHSFRFS 78 (96)
T ss_dssp CCEEECTTSCHHHHHHHHHHHHHHHHHHHHHTTCCSEE---------EEECCCSGGGTTCTTCHHHHHHHHHHHTTCCEE
T ss_pred CCeEECCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEE---------EEEECcCCCCCCCcchHHHHHHHHHhhCCCccc
Confidence 34789999999999877767776655433322224433 578899998754334599999999999888774
Q ss_pred CCCccceEEe
Q 005905 613 GNGSYGKIRI 622 (670)
Q Consensus 613 ~~~~~g~~~~ 622 (670)
+. -.|.+.+
T Consensus 79 eg-g~Ga~~V 87 (96)
T 2d9i_A 79 EI-KPGCLKV 87 (96)
T ss_dssp CC-STTCEEE
T ss_pred cC-CCcEEEE
Confidence 22 2366654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.12 E-value=0.58 Score=40.26 Aligned_cols=95 Identities=16% Similarity=0.068 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC---ChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 005905 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGD---QLPKTMEVLSDMKSLGLCP--NTITYSILLVACERKDDVEVGL 386 (670)
Q Consensus 312 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~ 386 (670)
...+++-|.+..+.+. ++..+...+..++++.+ +.++++.+|++..+.. .| +...+-.+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4566666776666553 67777777777888877 5668888888877753 24 2344445556778888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHH
Q 005905 387 MLLSQAKEDGVIPNLVMFKCIIGM 410 (670)
Q Consensus 387 ~~~~~m~~~g~~p~~~~~~~li~~ 410 (670)
++++.+.+ +.|+-.--..+...
T Consensus 92 ~y~~~lL~--ieP~n~QA~~Lk~~ 113 (152)
T 1pc2_A 92 KYVRGLLQ--TEPQNNQAKELERL 113 (152)
T ss_dssp HHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHh--cCCCCHHHHHHHHH
Confidence 88888887 44655444444443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=93.78 E-value=0.54 Score=36.77 Aligned_cols=66 Identities=6% Similarity=-0.040 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005905 190 DHITIGALMKACANAGQ---VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256 (670)
Q Consensus 190 d~~t~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 256 (670)
|...+..+..++...++ .++|..++++..+.+ +.++.+...+...+.+.|++++|...|+++.+..
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 34444555555543333 466666666666655 4455566666666666666666666666666543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=93.74 E-value=2.2 Score=41.00 Aligned_cols=64 Identities=17% Similarity=0.147 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC-CChhHHHHHHHHHHhC
Q 005905 297 ISYSSLMGACSNA-----KNWQKALELYEHMKSIKLKPTVSTMNALITALCDG-DQLPKTMEVLSDMKSL 360 (670)
Q Consensus 297 ~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~ 360 (670)
..|..|...|.+. |+.++|.+.|++..+.+..-+..++......++.. |+.++|.+.+++....
T Consensus 200 sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 200 AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 3455555555552 55555555555554443222244444444444442 5555555555555443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.65 E-value=0.39 Score=41.32 Aligned_cols=84 Identities=14% Similarity=0.067 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhCCChhHHHH
Q 005905 278 EAAFEILQEAKNQGISVGIISYSSLMGACSNAK---NWQKALELYEHMKSIKLKP--TVSTMNALITALCDGDQLPKTME 352 (670)
Q Consensus 278 ~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~ 352 (670)
..+.+-|.+..+.+ .++..+...+..++++.+ +++++..+|+++.+.. .| +...+-.|..+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 44555555555555 356666666667777766 5557777777766543 13 23444556666777777777777
Q ss_pred HHHHHHhCCCCCC
Q 005905 353 VLSDMKSLGLCPN 365 (670)
Q Consensus 353 l~~~m~~~g~~p~ 365 (670)
.++.+.+ +.|+
T Consensus 93 y~~~lL~--ieP~ 103 (152)
T 1pc2_A 93 YVRGLLQ--TEPQ 103 (152)
T ss_dssp HHHHHHH--HCTT
T ss_pred HHHHHHh--cCCC
Confidence 7777776 3564
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=92.81 E-value=1.2 Score=35.52 Aligned_cols=64 Identities=11% Similarity=-0.058 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 192 ITIGALMKACANAGQVDRAREVYKMIHKYN------IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255 (670)
Q Consensus 192 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 255 (670)
..+..+...+.+.|+++.|...|+...+.- -.....++..+..+|.+.|+++.|...+++..+.
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 344455566666666666666665554421 1223455666666666666666666666666554
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=92.45 E-value=0.82 Score=35.68 Aligned_cols=47 Identities=4% Similarity=0.006 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 312 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
.++|..+|++..+.. +.++.....+...+.+.|++++|+..|+++.+
T Consensus 25 ~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 25 TDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345555555544443 12444444444455555555555555555544
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.26 E-value=5.6 Score=35.01 Aligned_cols=100 Identities=13% Similarity=0.155 Sum_probs=48.4
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 005905 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 280 (670)
Q Consensus 201 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 280 (670)
....|+++.|.++.+.+ .+...|..|.+.....|+++-|.+.|.+... +..+.-.|.-.|+.+.-
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34556666666655443 2345566666666666666666666655431 12222234444555444
Q ss_pred HHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005905 281 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321 (670)
Q Consensus 281 ~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 321 (670)
.++-+.....| . +|.....+.-.|+++++.++|.+
T Consensus 80 ~kla~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 80 SKMQNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444433333 1 22333334445555555555543
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=92.18 E-value=4.5 Score=33.71 Aligned_cols=138 Identities=14% Similarity=0.049 Sum_probs=92.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 005905 239 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318 (670)
Q Consensus 239 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 318 (670)
.|..++..++..+..... +..-|+-+|--....-+-+-..++++.+-+ -.| ...||++......
T Consensus 20 dG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFD----------is~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD----------LDKCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC----------GGGCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhh---hcC----------cHhhhcHHHHHHH
Confidence 466666666666665542 334444444333333444444443333321 112 1356777777666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 005905 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 398 (670)
Q Consensus 319 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~ 398 (670)
|-.+- .+....+..+..+...|+-+.-.+++.++.. ..+|+......+..||.+.|+..++.+++.++-+.|++
T Consensus 84 ~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 84 GVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 65543 4566778888899999999999999999654 35789999999999999999999999999999998853
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.76 E-value=2.6 Score=37.22 Aligned_cols=27 Identities=15% Similarity=0.161 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005905 154 RVVFNALITACGQSGAVDRAFDVLAEM 180 (670)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~A~~l~~~m 180 (670)
...|..|.......|+++-|.+.|...
T Consensus 34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 344444444444455555555554443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=91.67 E-value=1.3 Score=35.17 Aligned_cols=63 Identities=13% Similarity=0.047 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 297 ISYSSLMGACSNAKNWQKALELYEHMKSIK------LKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
.-+..|...+.+.|+++.|...|+...+.- -.+....+..|..+|.+.|++++|+.++++..+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 334455555555555555555555443210 012334445555555555555555555555544
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=91.57 E-value=1.3 Score=42.53 Aligned_cols=94 Identities=17% Similarity=0.167 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhhCCCCCCCC---HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C
Q 005905 170 VDRAFDVLAEMNAEVHPVDPD---HITIGALMKACANA-----GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT-G 240 (670)
Q Consensus 170 ~~~A~~l~~~m~~~~~~~~pd---~~t~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g 240 (670)
...|..++++..+ +.|+ ...|..+...|.+. |+.++|.+.|++..+.+...+..++......++.. |
T Consensus 179 l~~A~a~lerAle----LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACD----LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHH----HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHH----hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence 5678888888876 4676 55788888888884 99999999999999876433578888888888885 9
Q ss_pred CHHHHHHHHHHHHHCCCC--CCHHHHHHH
Q 005905 241 DWEFACSVYDDMTKKGVI--PDEVFLSAL 267 (670)
Q Consensus 241 ~~~~A~~l~~~m~~~g~~--p~~~t~~~l 267 (670)
+.+++.+.+++.+..... |+....+.+
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 999999999999988776 775554443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=91.06 E-value=6 Score=32.96 Aligned_cols=64 Identities=16% Similarity=0.044 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005905 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326 (670)
Q Consensus 262 ~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 326 (670)
..+...++.....|+-++-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.+.-+.|
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 34444555555666666666666664332 24555555566666666666666666666655554
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=89.64 E-value=2.2 Score=36.33 Aligned_cols=53 Identities=13% Similarity=0.006 Sum_probs=30.7
Q ss_pred CChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 005905 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328 (670)
Q Consensus 275 g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 328 (670)
++.++|.++|+.+.+.+-.. ..+|.....--.+.|++..|.+++......+.+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 55666666666665443222 555555555556666666666666666665543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.32 E-value=16 Score=37.77 Aligned_cols=245 Identities=11% Similarity=0.127 Sum_probs=132.6
Q ss_pred CCHHHHHHHHHHHhhC---CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH----HHHhcC
Q 005905 168 GAVDRAFDVLAEMNAE---VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN----CCSQTG 240 (670)
Q Consensus 168 g~~~~A~~l~~~m~~~---~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~----~~~~~g 240 (670)
|+++.|++.+-.+.+. +............++..|...++++...+.+..+.+..-.. ......++. ......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence 4566776666554432 12233445567778888888888888877776655432121 222333333 222333
Q ss_pred CHHHHH--HHHHHHH--HCC-CCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCcc---HHHHHHHHHHHH
Q 005905 241 DWEFAC--SVYDDMT--KKG-VIP---DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ--GISVG---IISYSSLMGACS 307 (670)
Q Consensus 241 ~~~~A~--~l~~~m~--~~g-~~p---~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~--~~~~~---~~~~~~li~~~~ 307 (670)
..+... .+.+... ..| +-. .......|...|...|++.+|.+++..+... +.... +..+...+..|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 322211 1111110 011 111 1123456777888889999999999887543 21111 356777888999
Q ss_pred hcCCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHhCCChhHHHHHHHHHHhC-CCCCCHHHHHH----HHHHH
Q 005905 308 NAKNWQKALELYEHMKS----IKLKPT--VSTMNALITALCDGDQLPKTMEVLSDMKSL-GLCPNTITYSI----LLVAC 376 (670)
Q Consensus 308 ~~g~~~~A~~~~~~m~~----~~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~----ll~a~ 376 (670)
..+++..|..++.++.. ....|+ ...+..++..+...+++.+|.+.|.+.... ...-|...+.. ++.+.
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~ 268 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFL 268 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 99999999999888642 222222 245677788888889999998888877541 11122222221 11121
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005905 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413 (670)
Q Consensus 377 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r 413 (670)
.-++....-..++........-++...|..++.+|..
T Consensus 269 iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~ 305 (445)
T 4b4t_P 269 VLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTT 305 (445)
T ss_dssp HHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHh
Confidence 1222212222233332222223567778888887754
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=88.71 E-value=3.7 Score=34.95 Aligned_cols=54 Identities=15% Similarity=0.108 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc
Q 005905 240 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 294 (670)
Q Consensus 240 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~ 294 (670)
+|.++|.++|+.+++.+-.. ...|....+.-.++|++..|.+++......+..|
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 66777777777765543333 5556555566666777777777777777666444
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=87.54 E-value=8.5 Score=39.04 Aligned_cols=129 Identities=18% Similarity=0.018 Sum_probs=85.4
Q ss_pred CHHHHHHHHHHHH---hcCCHHHHHHHHHHHhhCCCC-CCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCCHH
Q 005905 153 DRVVFNALITACG---QSGAVDRAFDVLAEMNAEVHP-VDPDHITIGALMKACANAGQV-DRAREVYKMIHKYNIKGTPE 227 (670)
Q Consensus 153 ~~~~~~~li~~~~---~~g~~~~A~~l~~~m~~~~~~-~~pd~~t~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~ 227 (670)
|...|..++.... ..|+.+.|...+.+....-.| .-++... ..+ .....-+++... .
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~-----------~~w~~~~r~~l~~~~~-------~ 172 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRD-----------FQFVEPFATALVEDKV-------L 172 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTT-----------STTHHHHHHHHHHHHH-------H
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCc-----------hhHHHHHHHHHHHHHH-------H
Confidence 5556666654432 458888999988888765222 1122110 111 111122222221 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCccHHHHH
Q 005905 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN-----QGISVGIISYS 300 (670)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~-----~~~~~~~~~~~ 300 (670)
+...++..+...|++.+|...+..+..... .+...+..+|.++.+.|+..+|++.|+...+ .|+.|...+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 455677888899999999999888877654 4888999999999999999999999988654 48889877653
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=87.50 E-value=2.6 Score=34.80 Aligned_cols=20 Identities=15% Similarity=0.081 Sum_probs=9.7
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 005905 375 ACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 375 a~~~~g~~~~a~~~~~~m~~ 394 (670)
+|.+.|++++|.++++.+.+
T Consensus 83 g~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 83 GNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHH
Confidence 44445555555555544444
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.23 E-value=4.2 Score=44.98 Aligned_cols=52 Identities=12% Similarity=0.146 Sum_probs=33.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 005905 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357 (670)
Q Consensus 305 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 357 (670)
-|...|+++.|.++-++..... +-+-.+|..|..+|...|+++.|+-.++.+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3445677777777766665543 224667777777777777777777766665
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=84.78 E-value=5.6 Score=32.80 Aligned_cols=96 Identities=9% Similarity=0.013 Sum_probs=67.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHH
Q 005905 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK---ALELYEHMKSIKLKP--TVSTMNALITAL 341 (670)
Q Consensus 267 li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~p--~~~~~~~li~~~ 341 (670)
+++.......+..+.+-|......|. ++..+-..+..++.+..+... +..+++++...+ .| .....-.|.-++
T Consensus 7 ~l~~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~ 84 (126)
T 1nzn_A 7 VLNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGN 84 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHH
Confidence 34444445556667777776666563 666666677888888887665 888888887653 22 233444567788
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCH
Q 005905 342 CDGDQLPKTMEVLSDMKSLGLCPNT 366 (670)
Q Consensus 342 ~~~g~~~~A~~l~~~m~~~g~~p~~ 366 (670)
.+.|++++|.+.++.+.+ +.|+.
T Consensus 85 yklg~Y~~A~~~~~~lL~--~eP~n 107 (126)
T 1nzn_A 85 YRLKEYEKALKYVRGLLQ--TEPQN 107 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHhhhHHHHHHHHHHHHH--hCCCC
Confidence 999999999999999888 46743
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.18 E-value=4.7 Score=44.59 Aligned_cols=128 Identities=16% Similarity=0.093 Sum_probs=82.9
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHC------CCCC-CH----
Q 005905 195 GALMKACANAGQ-VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD-WEFACSVYDDMTKK------GVIP-DE---- 261 (670)
Q Consensus 195 ~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~------g~~p-~~---- 261 (670)
..+++.+...++ ++.|.++|+++.+.....+.....++|..+.+.++ --+|..++.+..+. ...+ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 455555655666 58899999998886532222233344544444432 22455555544321 1111 11
Q ss_pred ------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005905 262 ------VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323 (670)
Q Consensus 262 ------~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 323 (670)
..+..=.+.|...|+++.|+++-++....- +.+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 122222445667899999999999988764 6678899999999999999999999988874
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=83.62 E-value=4.1 Score=41.45 Aligned_cols=71 Identities=14% Similarity=0.022 Sum_probs=44.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 005905 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE-----DGVIPNLVMFK 405 (670)
Q Consensus 334 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~ 405 (670)
...++..+...|++.+|+..+..+... -+-+...+..++.++.+.|+..+|++.|+...+ .|+.|...+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 344556666667777776666666553 233556666677777777777777776665543 37777766543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 670 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.85 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.78 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.42 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.4 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.02 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.98 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.9 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.9 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.82 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.79 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.76 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.7 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.51 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.49 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.34 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.28 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.21 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.14 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.1 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.06 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.04 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.99 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.97 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.91 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.77 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.75 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.72 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.71 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.67 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.56 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.53 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.45 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.4 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.37 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.35 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.31 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.3 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.22 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.18 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.18 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.18 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.16 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.15 | |
| d2d9ia1 | 83 | Nedd4-binding protein 2 {Human (Homo sapiens) [Tax | 97.13 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.02 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.84 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.82 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.79 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 96.72 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.64 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 96.63 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.34 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 95.91 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.23 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.09 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.9 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.09 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 92.87 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 87.02 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 80.11 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=1.3e-17 Score=171.27 Aligned_cols=365 Identities=12% Similarity=0.054 Sum_probs=296.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCCHH
Q 005905 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSE 109 (670)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~g~~~ 109 (670)
+.+.+.|++++|++.|+++.+.. |.+......+..++...|++++|+..|+... +.+..+|..+..++.+.|+++
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccc
Confidence 34568899999999999999887 7777777778889999999999999998753 456788999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH-------HHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 005905 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA-------MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 182 (670)
Q Consensus 110 ~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~-------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 182 (670)
+|+..+........ .+..............+.... ......................+....+...+.....
T Consensus 85 ~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T d1w3ba_ 85 EAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhc
Confidence 99999999988753 344444444444444443322 1123455666666777778888899999998888876
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 005905 183 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262 (670)
Q Consensus 183 ~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 262 (670)
. .+-+...+..+...+...|+++.|...++...+.. +.+..+|..+...+...|++++|...|.+....+.. +..
T Consensus 164 ~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~ 238 (388)
T d1w3ba_ 164 T---QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAV 238 (388)
T ss_dssp H---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHH
T ss_pred c---CcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HHH
Confidence 4 13345677788888999999999999999988865 567889999999999999999999999999887654 677
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005905 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342 (670)
Q Consensus 263 t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 342 (670)
.+..+...+.+.|++++|...++++.+.. +-+..++..+...|...|++++|.+.|+...... +.+...+..+...+.
T Consensus 239 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 316 (388)
T d1w3ba_ 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHH
Confidence 88888999999999999999999998875 5567889999999999999999999999887664 457888999999999
Q ss_pred hCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 005905 343 DGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN-LVMFKCIIGMC 411 (670)
Q Consensus 343 ~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~ 411 (670)
..|++++|++.|++..+. .| +..++..+..++.+.|++++|...|++.++. .|+ ...|..+..+|
T Consensus 317 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~ 383 (388)
T d1w3ba_ 317 EQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTL 383 (388)
T ss_dssp TTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 999999999999998874 45 4667888889999999999999999998874 464 45555555543
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=3.4e-15 Score=152.81 Aligned_cols=338 Identities=14% Similarity=0.080 Sum_probs=271.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCC
Q 005905 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKD 107 (670)
Q Consensus 31 ~~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~g~ 107 (670)
.-..+.+.|++++|++.|+++.+.. |.....+..+...+...|++++|+..+.... ..+...+............
T Consensus 39 la~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (388)
T d1w3ba_ 39 LSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGD 116 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHhhhhcccccccccccccccccccccccccccccccccccc
Confidence 3344558999999999999999887 7777777778889999999999999987653 4455555556666666666
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH-------hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005905 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF-------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEM 180 (670)
Q Consensus 108 ~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~-------~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 180 (670)
...+............. ...............+...... ...+.+...+..+...+...|++++|...+++.
T Consensus 117 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 195 (388)
T d1w3ba_ 117 MEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKA 195 (388)
T ss_dssp SSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred ccccccccccccccccc-cccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHH
Confidence 66666666666555433 3344444444555555544322 233456788889999999999999999999998
Q ss_pred hhCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 005905 181 NAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259 (670)
Q Consensus 181 ~~~~~~~~p-d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 259 (670)
... .| +...+..+...+...|++++|...|......+ +.+...+..+...|.+.|++++|...|++..+....
T Consensus 196 l~~----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~- 269 (388)
T d1w3ba_ 196 VTL----DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH- 269 (388)
T ss_dssp HHH----CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-
T ss_pred HHh----CcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-
Confidence 874 34 45678888999999999999999999998876 567788899999999999999999999999887644
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005905 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 339 (670)
Q Consensus 260 ~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 339 (670)
+..++..+..++...|+.++|.+.++...... +.+...+..+...|.+.|++++|.+.|++..+.. +.+..+|..+..
T Consensus 270 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~ 347 (388)
T d1w3ba_ 270 FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLAS 347 (388)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 67888999999999999999999999988765 6678889999999999999999999999988765 336788999999
Q ss_pred HHHhCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 005905 340 ALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDD 381 (670)
Q Consensus 340 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~ 381 (670)
.|.+.|++++|++.|++..+ +.|+ ...|..+..++.+.||
T Consensus 348 ~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 348 VLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999887 4665 6678888888877765
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=4.3e-11 Score=119.17 Aligned_cols=242 Identities=11% Similarity=-0.037 Sum_probs=170.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhC---CCCCHHHHHHHHHHHHcCC
Q 005905 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSK 106 (670)
Q Consensus 30 ~~~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~y~~li~~~~~~g 106 (670)
..-..+.+.|++++|+..|+++.+.. |.+...+..+..++...|++++|+..|.+. .+.+...|..+...+...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccc
Confidence 34445679999999999999999987 777777777888999999999999999865 3456788999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 005905 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186 (670)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 186 (670)
++++|...++...... |+............ ...+.......+..+...+.+.+|.+.|.+..... +
T Consensus 102 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-p 167 (323)
T d1fcha_ 102 LQRQACEILRDWLRYT--PAYAHLVTPAEEGA-----------GGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD-P 167 (323)
T ss_dssp CHHHHHHHHHHHHHTS--TTTGGGCC--------------------------CTTHHHHHHHHHHHHHHHHHHHHHHS-T
T ss_pred cccccccchhhHHHhc--cchHHHHHhhhhhh-----------hhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHh-h
Confidence 9999999999988753 33211100000000 00011111122233445566777888887776542 2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 005905 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266 (670)
Q Consensus 187 ~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 266 (670)
-.++...+..+...+...|++++|...|+...... +.+..+|..+..+|.+.|++++|.+.|++..+.... +...+..
T Consensus 168 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~ 245 (323)
T d1fcha_ 168 TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYN 245 (323)
T ss_dssp TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred cccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhhc-cHHHHHH
Confidence 23455667777778888888888888888877765 456777888888888888888888888887765432 5566777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH
Q 005905 267 LIDFAGHAGKVEAAFEILQEAKN 289 (670)
Q Consensus 267 li~~~~~~g~~~~A~~i~~~m~~ 289 (670)
+..+|.+.|++++|.+.|.+..+
T Consensus 246 lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 246 LGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 77788888888888888777665
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=5.9e-11 Score=118.18 Aligned_cols=228 Identities=13% Similarity=0.022 Sum_probs=183.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005905 159 ALITACGQSGAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 237 (670)
Q Consensus 159 ~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p-d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 237 (670)
.....+.+.|++++|+..|+++.+. .| +..+|..+..++...|++++|...|.+..+.. +.+...|..+...|.
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~----~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 98 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQ----DPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT 98 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccc
Confidence 3556788999999999999999885 44 46788899999999999999999999998876 567889999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC--------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCccHHHHHHH
Q 005905 238 QTGDWEFACSVYDDMTKKGVIP--------------DEVFLSALIDFAGHAGKVEAAFEILQEAKNQG-ISVGIISYSSL 302 (670)
Q Consensus 238 ~~g~~~~A~~l~~~m~~~g~~p--------------~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~-~~~~~~~~~~l 302 (670)
..|++++|.+.+++........ +.......+..+...+...+|.+.+....+.. -..+..++..+
T Consensus 99 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l 178 (323)
T d1fcha_ 99 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 178 (323)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred ccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 9999999999999987653210 00111122233444566778888888876643 23467788899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 005905 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDD 381 (670)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~ 381 (670)
...+...|++++|...|++..... +-+...|..+...|...|++++|++.|++..+. .| +...|..+..+|.+.|+
T Consensus 179 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~ 255 (323)
T d1fcha_ 179 GVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGA 255 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHH--hhccHHHHHHHHHHHHHCCC
Confidence 999999999999999999987764 336888999999999999999999999998874 45 46678889999999999
Q ss_pred HHHHHHHHHHHHH
Q 005905 382 VEVGLMLLSQAKE 394 (670)
Q Consensus 382 ~~~a~~~~~~m~~ 394 (670)
+++|+..|++.++
T Consensus 256 ~~~A~~~~~~al~ 268 (323)
T d1fcha_ 256 HREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998876
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=4.4e-08 Score=96.45 Aligned_cols=214 Identities=10% Similarity=0.012 Sum_probs=166.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHH
Q 005905 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAG-QVDRAREVYKMIHKYNIKGTPEVYTI 231 (670)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd-~~t~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~ 231 (670)
...|+.+...+.+.+.+++|+++++++.+. .|+ ...|+....++...| ++++|+..++...+.+ +-+..+|+.
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l----nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~ 117 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIEL----NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHH 117 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHH----CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHH
Confidence 456777778888999999999999999874 565 456777777777776 5899999999998876 667899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC
Q 005905 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311 (670)
Q Consensus 232 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~ 311 (670)
+...+.+.|++++|+..|+++.+.... +...|..+...+...|++++|++.++.+.+.+ +.+...|+.+...+.+.+.
T Consensus 118 ~~~~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~ 195 (315)
T d2h6fa1 118 RRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTG 195 (315)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HhHHHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccc
Confidence 999999999999999999999988655 78899999999999999999999999999876 5567788877777666655
Q ss_pred ------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHH
Q 005905 312 ------WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC-PNTITYSILLVAC 376 (670)
Q Consensus 312 ------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~ 376 (670)
+++|...+....+.. +.+...|+.+...+.. ...+++.+.++...+.... .+...+..+...|
T Consensus 196 ~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 196 YNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265 (315)
T ss_dssp SCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred cchhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 678888888877765 3377888877666544 4467888888777653222 2344454555444
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.98 E-value=9.6e-08 Score=93.73 Aligned_cols=188 Identities=14% Similarity=0.092 Sum_probs=148.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 005905 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 284 (670)
Q Consensus 205 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~ 284 (670)
+..++|..+|+...+...+.+...|...+..+.+.|+++.|..+|+++++.........|...+..+.+.|..+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34678889998888765566777888888999999999999999999987655544567888999999999999999999
Q ss_pred HHHHHCCCCccHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhC-CC
Q 005905 285 QEAKNQGISVGIISYSSLMGA-CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL-GL 362 (670)
Q Consensus 285 ~~m~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~ 362 (670)
..+.+.+ +.+...|...... +...|+.+.|..+|+.+.+.. +.+...|...+..+.+.|+.++|..+|++.... +.
T Consensus 158 ~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 158 KKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 9998776 3334444444333 345688999999999988753 346888999999999999999999999998774 23
Q ss_pred CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 363 CPN--TITYSILLVACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 363 ~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 394 (670)
.|+ ...|...+.--...|+.+.+..+++++.+
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 443 45677777777788999999999988765
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.90 E-value=2e-07 Score=91.42 Aligned_cols=188 Identities=9% Similarity=0.011 Sum_probs=149.8
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005905 168 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247 (670)
Q Consensus 168 g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 247 (670)
+..++|..+|++.... ..+.+...|...+....+.|+++.|..+|+.+.+........+|...+..+.+.|+.+.|.+
T Consensus 78 ~~~~~a~~i~~ral~~--~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~ 155 (308)
T d2onda1 78 LFSDEAANIYERAIST--LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRM 155 (308)
T ss_dssp HHHHHHHHHHHHHHTT--TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred cchHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHH
Confidence 3468889999998763 12334566777888888999999999999999886544445689999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005905 248 VYDDMTKKGVIPDEVFLSALID-FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326 (670)
Q Consensus 248 l~~~m~~~g~~p~~~t~~~li~-~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 326 (670)
+|+.+.+.+.. +...|..... -+...|+.+.|..+|+.+.+.. +.+...|...++.+.+.|+++.|+.+|++.....
T Consensus 156 i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~ 233 (308)
T d2onda1 156 IFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 233 (308)
T ss_dssp HHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence 99999887654 3333433333 3445689999999999998863 5668899999999999999999999999987653
Q ss_pred -CCC--CHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 327 -LKP--TVSTMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 327 -~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
..| ....|...+.--..+|+.+.+.++++++.+
T Consensus 234 ~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 234 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 233 356899888888889999999999998876
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=1.3e-07 Score=92.94 Aligned_cols=214 Identities=10% Similarity=0.068 Sum_probs=171.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005905 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG-DWEFACSVYDDMTKKGVIPDEVFLSALIDF 270 (670)
Q Consensus 192 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 270 (670)
..|+.+...+.+.+.+++|+++++++.+.+ +.+..+|+....++...| ++++|+..+++.++.... +..+|..+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHH
Confidence 456666677888999999999999999987 778889999999988876 599999999999888765 78899999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC----
Q 005905 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ---- 346 (670)
Q Consensus 271 ~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---- 346 (670)
+.+.|++++|++.+..+.+.. +-+..+|+.+...+.+.|++++|.+.|+++.+.++ .+...|+.+...+.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p-~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCC-ccHHHHHHHHHHHHHccccchh
Confidence 999999999999999999876 66789999999999999999999999999998763 478889888877777665
Q ss_pred --hhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHH
Q 005905 347 --LPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKEDGVI-PNLVMFKCIIGMCS 412 (670)
Q Consensus 347 --~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~ 412 (670)
+++|++.+.+..+. .| |...|..+...+.. ...+++.+.++...+.... .+...+..+.+.|.
T Consensus 200 ~~~~~ai~~~~~al~~--~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKL--VPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred hhhHHhHHHHHHHHHh--CCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 56888888888774 45 56666666555544 4467888888877764322 34455556666543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.82 E-value=8.3e-07 Score=87.81 Aligned_cols=167 Identities=13% Similarity=-0.003 Sum_probs=84.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCC----HHH
Q 005905 157 FNALITACGQSGAVDRAFDVLAEMNAEVHP--VDPDHITIGALMKACANAGQVDRAREVYKMIHKYN--IKGT----PEV 228 (670)
Q Consensus 157 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~--~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~----~~~ 228 (670)
+..+...+...|+++.+...+......... ......++......+...+++..+...+.+..... .... ...
T Consensus 136 ~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~ 215 (366)
T d1hz4a_ 136 VRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA 215 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHH
Confidence 334445566666666666666655442111 11122334444455556666666666665443311 1111 123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCcc-HHHHH
Q 005905 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIP---DEVFLSALIDFAGHAGKVEAAFEILQEAKN----QGISVG-IISYS 300 (670)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~li~~~~~~g~~~~A~~i~~~m~~----~~~~~~-~~~~~ 300 (670)
+..+...+...|++++|...+.+........ ....+..+..++...|++++|...++.+.. .+..|+ ..++.
T Consensus 216 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 295 (366)
T d1hz4a_ 216 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLL 295 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHH
Confidence 4445555666666666666666554432211 123444455566666666666666665542 222222 23455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 005905 301 SLMGACSNAKNWQKALELYEHMK 323 (670)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~m~ 323 (670)
.+..+|.+.|++++|.+.|++..
T Consensus 296 ~la~~~~~~g~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 296 LLNQLYWQAGRKSDAQRVLLDAL 318 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 55566666666666666666543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.79 E-value=2.9e-06 Score=83.73 Aligned_cols=273 Identities=11% Similarity=0.002 Sum_probs=185.1
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005905 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVL 177 (670)
Q Consensus 98 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 177 (670)
....+...|++++|+.++++.++.. |+..... ....++.+...|...|++++|+..|
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~--~~~~~~~---------------------~~~a~~~lg~~~~~~g~~~~A~~~~ 74 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEEL--PPGWFYS---------------------RIVATSVLGEVLHCKGELTRSLALM 74 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHH---------------------HHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--cCCCcHH---------------------HHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3456678899999999998887753 3211100 0123455667777888888888888
Q ss_pred HHHhhCCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC---HHHHHHHHHHHHhcCCHHHHH
Q 005905 178 AEMNAEVHPVDPD----HITIGALMKACANAGQVDRAREVYKMIHKY----NIKGT---PEVYTIAINCCSQTGDWEFAC 246 (670)
Q Consensus 178 ~~m~~~~~~~~pd----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~---~~~~~~li~~~~~~g~~~~A~ 246 (670)
++....... .++ ..++..+...+...|++..+...+...... ..... ...+..+...+...|+++.+.
T Consensus 75 ~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~ 153 (366)
T d1hz4a_ 75 QQTEQMARQ-HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE 153 (366)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHh-hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhH
Confidence 876542100 112 234555666778889999998888766432 11111 234566777888899999999
Q ss_pred HHHHHHHHCC----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCc--cHHHHHHHHHHHHhcCCHHHHH
Q 005905 247 SVYDDMTKKG----VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GISV--GIISYSSLMGACSNAKNWQKAL 316 (670)
Q Consensus 247 ~l~~~m~~~g----~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~----~~~~--~~~~~~~li~~~~~~g~~~~A~ 316 (670)
..+....... .......+..+...+...+....+...+.+.... +..+ ....+..+...+...|++++|.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 233 (366)
T d1hz4a_ 154 ASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAA 233 (366)
T ss_dssp HHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHH
Confidence 9988876532 2223455666667777888888888887766442 1111 1345666777888999999999
Q ss_pred HHHHHHHhCCCC---CCHHHHHHHHHHHHhCCChhHHHHHHHHHHh----CCCCCCH-HHHHHHHHHHHhcCCHHHHHHH
Q 005905 317 ELYEHMKSIKLK---PTVSTMNALITALCDGDQLPKTMEVLSDMKS----LGLCPNT-ITYSILLVACERKDDVEVGLML 388 (670)
Q Consensus 317 ~~~~~m~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~ 388 (670)
..++........ .....+..+...|...|++++|...+++... .+..|+. .++..+..++...|++++|.+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 313 (366)
T d1hz4a_ 234 NWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRV 313 (366)
T ss_dssp HHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999887654322 2245667788899999999999999998763 3445543 4566677789999999999999
Q ss_pred HHHHHH
Q 005905 389 LSQAKE 394 (670)
Q Consensus 389 ~~~m~~ 394 (670)
+++..+
T Consensus 314 l~~Al~ 319 (366)
T d1hz4a_ 314 LLDALK 319 (366)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988765
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.76 E-value=3.5e-07 Score=86.81 Aligned_cols=218 Identities=12% Similarity=0.019 Sum_probs=140.6
Q ss_pred CHHHHHHHHHHHhhCCCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005905 169 AVDRAFDVLAEMNAEVHPVDP--DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246 (670)
Q Consensus 169 ~~~~A~~l~~~m~~~~~~~~p--d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 246 (670)
+.+.|+.-+++..... ...+ ...+|..+...|.+.|++++|.+.|++..+.. +.++.+|+.+..+|.+.|++++|+
T Consensus 14 ~~e~al~~~~e~l~~~-~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~ 91 (259)
T d1xnfa_ 14 QQEVILARMEQILASR-ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 91 (259)
T ss_dssp HHHHHHHHHHHHHTSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhh-hcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhh
Confidence 3556666677776541 1122 13356667778888899999999998888876 567888888888999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005905 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326 (670)
Q Consensus 247 ~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 326 (670)
..|++..+.... +..++..+..+|...|++++|.+.++...+.. +.+......+...+.+.+..+.+..+........
T Consensus 92 ~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (259)
T d1xnfa_ 92 EAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD 169 (259)
T ss_dssp HHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC
T ss_pred hhhhHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc
Confidence 999988887544 55677778888888899999999998887765 3344444445555566666666666655555432
Q ss_pred CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCC-----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005905 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-----LCPN-TITYSILLVACERKDDVEVGLMLLSQAKEDG 396 (670)
Q Consensus 327 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g 396 (670)
++...++. +..+ .+..... ..+....... ..|+ ..+|..+...+...|++++|...|+..+...
T Consensus 170 --~~~~~~~~-~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 170 --KEQWGWNI-VEFY--LGNISEQ-TLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp --CCSTHHHH-HHHH--TTSSCHH-HHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred --hhhhhhhH-HHHH--HHHHHHH-HHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 22222222 2222 2222111 1122221110 1122 2355667778888999999999999888754
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.70 E-value=2.4e-07 Score=87.89 Aligned_cols=201 Identities=9% Similarity=-0.099 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005905 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 234 (670)
Q Consensus 155 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 234 (670)
.+|..+...|.+.|++++|+..|++..... +-+..+|..+..++.+.|++++|...|+++.+.. +.+..++..+..
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~ 113 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIR---PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGI 113 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccC---CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHH
Confidence 456677888999999999999999998742 2346788889999999999999999999999876 556778888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC---
Q 005905 235 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN--- 311 (670)
Q Consensus 235 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~--- 311 (670)
+|...|++++|...|+...+.... +......+..++.+.+..+.+..+..........+ ..+ .++..+.....
T Consensus 114 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~ 189 (259)
T d1xnfa_ 114 ALYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ--WGW-NIVEFYLGNISEQT 189 (259)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCS--THH-HHHHHHTTSSCHHH
T ss_pred HHHHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhh--hhh-hHHHHHHHHHHHHH
Confidence 999999999999999999887543 44444444445555566555555555555543222 112 22233322222
Q ss_pred -HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH
Q 005905 312 -WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366 (670)
Q Consensus 312 -~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 366 (670)
.+.+...+....... +....+|..+...|...|++++|++.|++.... .|+.
T Consensus 190 ~~~~~~~~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~ 242 (259)
T d1xnfa_ 190 LMERLKADATDNTSLA-EHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN 242 (259)
T ss_dssp HHHHHHHHCCSHHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT
T ss_pred HHHHHHHHHHHhhhcC-cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCC
Confidence 222222222111110 112346777888999999999999999998874 5653
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.51 E-value=1.6e-07 Score=93.31 Aligned_cols=273 Identities=8% Similarity=-0.069 Sum_probs=185.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005905 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADC-KLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAF 174 (670)
Q Consensus 96 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 174 (670)
..++.........++|+.+++..++. .|+. ..|+..-..+...+. +...+...|++++|+
T Consensus 33 ~~~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~-----------------~~~~~~~~~~~~~al 93 (334)
T d1dcea1 33 QAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLET-----------------EKSPEESAALVKAEL 93 (334)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHT-----------------TSCHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhh-----------------hcchHHHHHHHHHHH
Confidence 33444344444558999999999875 3554 344433322221111 112244566788899
Q ss_pred HHHHHHhhCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHH
Q 005905 175 DVLAEMNAEVHPVDPDHITIGALMKACANAG--QVDRAREVYKMIHKYNIKGTPEVYTI-AINCCSQTGDWEFACSVYDD 251 (670)
Q Consensus 175 ~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~l~~~ 251 (670)
.+|+...... +.+...|..+..++...+ ++++|...+..+.+.. +.+...+.. ....+...+.+++|+..++.
T Consensus 94 ~~~~~~l~~~---pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~ 169 (334)
T d1dcea1 94 GFLESCLRVN---PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDS 169 (334)
T ss_dssp HHHHHHHHHC---TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHT
T ss_pred HHHHHHHHhC---CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHH
Confidence 9999987741 334556666666666655 4889999999988876 455666554 44677778999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 005905 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331 (670)
Q Consensus 252 m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 331 (670)
..+.+.. +...|..+..++.+.|++++|...+....+.. |+ ...+...+...+..+++...|....... +++.
T Consensus 170 ~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~ 242 (334)
T d1dcea1 170 LITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL--LK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPL 242 (334)
T ss_dssp TTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHH--HH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCS
T ss_pred HHHcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhH--HH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchh
Confidence 8888765 77888888888888888887765554433321 11 1223344556677777888888777654 3455
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 005905 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 402 (670)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~ 402 (670)
..+..+...+...|+.++|+..|.+.... .| +..++..+..++...|+.++|.++++.+.+. .|+..
T Consensus 243 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~ 310 (334)
T d1dcea1 243 FRCELSVEKSTVLQSELESCKELQELEPE--NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRA 310 (334)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGH
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHhh--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccH
Confidence 66677777888889999999999887764 34 4566777788899999999999999998884 46533
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.49 E-value=8.5e-07 Score=87.77 Aligned_cols=263 Identities=8% Similarity=-0.015 Sum_probs=160.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHH----------HhhhhhHHHHHHHhhhC---CCCCHHHHHHHHHHHHcC
Q 005905 39 GRISECIDLLEDMERKGLLDMDKVYHARFFNV----------CKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASS 105 (670)
Q Consensus 39 g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~----------~~~~~~~~~A~~~~~~~---~~~~~~~y~~li~~~~~~ 105 (670)
...++|+++++.+.+.. |...........+ ....+.+++|+.+|+.. .+.+...|..+..++...
T Consensus 43 ~~~~~al~~~~~~l~~~--P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~ 120 (334)
T d1dcea1 43 ELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 120 (334)
T ss_dssp CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC
T ss_pred cccHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHh
Confidence 34589999999999877 6654432211111 22345677788877765 244666777776666665
Q ss_pred C--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 005905 106 K--DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 183 (670)
Q Consensus 106 g--~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 183 (670)
+ ++++|+..+.++.+.. +++...+.. .....+...+.+++|+..++.....
T Consensus 121 ~~~~~~~a~~~~~~al~~~-~~~~~~~~~--------------------------~~~~~~~~~~~~~~Al~~~~~~i~~ 173 (334)
T d1dcea1 121 PEPNWARELELCARFLEAD-ERNFHCWDY--------------------------RRFVAAQAAVAPAEELAFTDSLITR 173 (334)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHH--------------------------HHHHHHHTCCCHHHHHHHHHTTTTT
T ss_pred ccccHHHHHHHHHHHHhhC-chhhhhhhh--------------------------HHHHHHHhccccHHHHHHHHHHHHc
Confidence 4 4778888888877753 222222221 2224455567777777777777664
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 005905 184 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263 (670)
Q Consensus 184 ~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 263 (670)
. +-+...|..+...+.+.|++++|...+....+.. .....+...+...+..+++...+........ ++...
T Consensus 174 ~---p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~-~~~~~ 244 (334)
T d1dcea1 174 N---FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL-----LKELELVQNAFFTDPNDQSAWFYHRWLLGRA-EPLFR 244 (334)
T ss_dssp T---CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHH-----HHHHHHHHHHHHHCSSCSHHHHHHHHHHSCC-CCSSS
T ss_pred C---CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhH-----HHHHHHHHHHHHhcchhHHHHHHHHHHHhCc-chhhH
Confidence 2 2345667777777777777777665554433321 1111223334555666677777777666543 23444
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 005905 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-TVSTMNALITALC 342 (670)
Q Consensus 264 ~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~ 342 (670)
+..+...+...++.++|...+.+..+.. +.+..++..+..+|...|++++|.+.|++..+.. | +..-|+.|...+.
T Consensus 245 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld--P~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 245 CELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD--PMRAAYLDDLRSKFL 321 (334)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--cccHHHHHHHHHHHh
Confidence 5555666666777777877777766554 3345677777778888888888888888877653 3 3455565655444
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.34 E-value=4.5e-05 Score=73.28 Aligned_cols=210 Identities=15% Similarity=0.107 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 005905 43 ECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG 122 (670)
Q Consensus 43 ~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g 122 (670)
++.+++.+....+- ....+...+. .....++++|.++ |......|...+++++|...|.+..+.
T Consensus 3 ~~~~~l~~aek~~~--~~~~~~~~~~--~~~~~~~~~Aa~~-----------y~~aa~~y~~~~~~~~A~~~y~kA~~~- 66 (290)
T d1qqea_ 3 DPVELLKRAEKKGV--PSSGFMKLFS--GSDSYKFEEAADL-----------CVQAATIYRLRKELNLAGDSFLKAADY- 66 (290)
T ss_dssp CHHHHHHHHHHHSS--CCCTHHHHHS--CCSHHHHHHHHHH-----------HHHHHHHHHHTTCTHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHhcC--cchhHHHHhc--CCccccHHHHHHH-----------HHHHHHHHHHCcCHHHHHHHHHHHHHH-
Confidence 45667777665552 2222222111 1234467788766 455678899999999999999887653
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC---CCCCCHHHHHHHHH
Q 005905 123 LKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH---PVDPDHITIGALMK 199 (670)
Q Consensus 123 ~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~---~~~pd~~t~~~li~ 199 (670)
+.+.++...+ ..+|+.+..+|.+.|++++|++.|++...... .......++..+..
T Consensus 67 --------------~~~~~~~~~~-------a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 125 (290)
T d1qqea_ 67 --------------QKKAGNEDEA-------GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (290)
T ss_dssp --------------HHHTTCHHHH-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------HHHcCCCHHH-------HHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHH
Confidence 2222222211 23566666777777777777777766543200 00011233444445
Q ss_pred HHHH-cCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHH
Q 005905 200 ACAN-AGQVDRAREVYKMIHKY----NIKG-TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE------VFLSAL 267 (670)
Q Consensus 200 ~~~~-~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~------~t~~~l 267 (670)
.|.. .|++++|.+.|.+..+. +.++ ...++..+...|.+.|++++|...|++.......... ..+...
T Consensus 126 ~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (290)
T d1qqea_ 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (290)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHH
Confidence 5533 57778887777665432 1110 1234555666667777777777777666554221110 112223
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 005905 268 IDFAGHAGKVEAAFEILQEAKN 289 (670)
Q Consensus 268 i~~~~~~g~~~~A~~i~~~m~~ 289 (670)
+..+...++++.|...+....+
T Consensus 206 ~~~~l~~~d~~~A~~~~~~~~~ 227 (290)
T d1qqea_ 206 GLCQLAATDAVAAARTLQEGQS 227 (290)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 3344445555555555555443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=2.9e-05 Score=69.47 Aligned_cols=92 Identities=12% Similarity=0.079 Sum_probs=75.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005905 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 235 (670)
Q Consensus 156 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 235 (670)
.|+- ...+...|++++|++.|.++. +|+..+|..+..+|...|++++|++.|++..+.+ +.+...|+.+..+
T Consensus 8 l~~~-g~~~~~~~d~~~Al~~~~~i~------~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~ 79 (192)
T d1hh8a_ 8 LWNE-GVLAADKKDWKGALDAFSAVQ------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGML 79 (192)
T ss_dssp HHHH-HHHHHHTTCHHHHHHHHHTSS------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHH-HHHHHHCCCHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHH
Confidence 3443 556778899999999988652 4677788888999999999999999999988877 6678888889999
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 005905 236 CSQTGDWEFACSVYDDMTKK 255 (670)
Q Consensus 236 ~~~~g~~~~A~~l~~~m~~~ 255 (670)
|.+.|++++|+..|++....
T Consensus 80 ~~~~g~~~~A~~~~~kAl~~ 99 (192)
T d1hh8a_ 80 YYQTEKYDLAIKDLKEALIQ 99 (192)
T ss_dssp HHHTTCHHHHHHHHHHHHHT
T ss_pred HHhhccHHHHHHHHHHHHHh
Confidence 99999999999998887653
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.21 E-value=2.2e-05 Score=75.57 Aligned_cols=194 Identities=9% Similarity=0.049 Sum_probs=109.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHH
Q 005905 199 KACANAGQVDRAREVYKMIHKY----NIKG-TPEVYTIAINCCSQTGDWEFACSVYDDMTKK----GV-IPDEVFLSALI 268 (670)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~-~p~~~t~~~li 268 (670)
..|...+++++|.+.|.+..+. +-++ -..+|+.+..+|.+.|++++|.+.+++..+. |. .....++..+.
T Consensus 45 ~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 124 (290)
T d1qqea_ 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (290)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHH
Confidence 4455666666666666555432 1011 1245666677777777777777777665432 11 01123444555
Q ss_pred HHHHh-cCChHHHHHHHHHHHHC----CCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----H-HHHHH
Q 005905 269 DFAGH-AGKVEAAFEILQEAKNQ----GISV-GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT-----V-STMNA 336 (670)
Q Consensus 269 ~~~~~-~g~~~~A~~i~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~-~~~~~ 336 (670)
..|.. .|++++|.+.+.+..+. +..+ ...++..+...|...|++++|...|+++........ . ..+..
T Consensus 125 ~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (290)
T d1qqea_ 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (290)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHH
Confidence 55533 57788888777766432 2111 134567778888888888888888888765432211 1 22334
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCCC-CC---HHHHHHHHHHHHh--cCCHHHHHHHHHHH
Q 005905 337 LITALCDGDQLPKTMEVLSDMKSLGLC-PN---TITYSILLVACER--KDDVEVGLMLLSQA 392 (670)
Q Consensus 337 li~~~~~~g~~~~A~~l~~~m~~~g~~-p~---~~t~~~ll~a~~~--~g~~~~a~~~~~~m 392 (670)
++..+...|+++.|...|++..+.... ++ ......++.++.. .+.+++|+..|+.+
T Consensus 205 ~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 205 KGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 455666778888888888887663210 11 2234555666544 24467777766543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=6.3e-05 Score=67.20 Aligned_cols=126 Identities=13% Similarity=-0.004 Sum_probs=90.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 005905 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 277 (670)
Q Consensus 198 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 277 (670)
...+...|+++.|++.|.++ .+++..+|..+..+|...|++++|++.|++.++.+.. +...|..+..+|.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccH
Confidence 34556788888888888654 2566777888888888888888888888888877654 677778888888888888
Q ss_pred HHHHHHHHHHHHCCC--------------Cc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 005905 278 EAAFEILQEAKNQGI--------------SV-GIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328 (670)
Q Consensus 278 ~~A~~i~~~m~~~~~--------------~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 328 (670)
++|.+.|+....... .. ...++..+..+|.+.|++++|.+.|....+....
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 888888887765311 01 1245556667777888888888887777665433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=6.4e-05 Score=60.99 Aligned_cols=88 Identities=17% Similarity=0.103 Sum_probs=35.9
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 005905 163 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 242 (670)
Q Consensus 163 ~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 242 (670)
.+.+.|++++|+.+|++..+.. +-+...|..+..++...|++++|+..+....+.+ +.+...|..+..++...|++
T Consensus 12 ~~~~~g~~~eAi~~~~~al~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 12 KALSVGNIDDALQCYSEAIKLD---PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC---CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCH
Confidence 3444444444444444443321 1223334444444444444444444444444333 33334444444444444444
Q ss_pred HHHHHHHHHHHH
Q 005905 243 EFACSVYDDMTK 254 (670)
Q Consensus 243 ~~A~~l~~~m~~ 254 (670)
++|+..|++..+
T Consensus 88 ~~A~~~~~~a~~ 99 (117)
T d1elwa_ 88 EEAKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=9.8e-05 Score=59.84 Aligned_cols=106 Identities=13% Similarity=0.023 Sum_probs=90.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005905 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275 (670)
Q Consensus 196 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g 275 (670)
.-...+.+.|++++|...|.+..+.. +.+...|..+..+|.+.|++++|+..+.+.++.+.. +...|..+..++...|
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHcc
Confidence 34667889999999999999999887 778899999999999999999999999999988754 8889999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCccHHHHHHHHH
Q 005905 276 KVEAAFEILQEAKNQGISVGIISYSSLMG 304 (670)
Q Consensus 276 ~~~~A~~i~~~m~~~~~~~~~~~~~~li~ 304 (670)
++++|...++...+.. +-+...+..+-.
T Consensus 86 ~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 113 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHE-ANNPQLKEGLQN 113 (117)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 9999999999999865 334555544433
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=9.7e-05 Score=63.60 Aligned_cols=90 Identities=12% Similarity=-0.032 Sum_probs=44.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 005905 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 278 (670)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 278 (670)
..|.+.|++++|...|.+..+.+ +.+...|..+..+|...|++++|...|++.++.... +...|..+..++...|+++
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcCCHH
Confidence 34445555555555555555443 334445555555555555555555555555444322 3344444555555555555
Q ss_pred HHHHHHHHHHHC
Q 005905 279 AAFEILQEAKNQ 290 (670)
Q Consensus 279 ~A~~i~~~m~~~ 290 (670)
+|...+++..+.
T Consensus 96 eA~~~~~~a~~~ 107 (159)
T d1a17a_ 96 AALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 555555555443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.99 E-value=5.7e-05 Score=67.76 Aligned_cols=95 Identities=13% Similarity=-0.081 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005905 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269 (670)
Q Consensus 190 d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~ 269 (670)
+...+......+.+.|++++|+..|.+..+.. +.++..|+.+..+|.+.|++++|+..|++.++.... +...|..+..
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg~ 80 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHHH
Confidence 33334444444444444444444444444433 334444444444444444444444444444433221 2333333444
Q ss_pred HHHhcCChHHHHHHHHH
Q 005905 270 FAGHAGKVEAAFEILQE 286 (670)
Q Consensus 270 ~~~~~g~~~~A~~i~~~ 286 (670)
+|...|++++|...|+.
T Consensus 81 ~~~~l~~~~~A~~~~~~ 97 (201)
T d2c2la1 81 CQLEMESYDEAIANLQR 97 (201)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 44444444444444433
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=0.00014 Score=62.63 Aligned_cols=105 Identities=11% Similarity=-0.019 Sum_probs=88.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005905 157 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 236 (670)
Q Consensus 157 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 236 (670)
+......|.+.|++++|+..|.+..+.. +-+...|..+..+|...|++++|...|+.+.+.+ +.+..+|..+..+|
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~ 88 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELN---PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 88 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccc---hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHH
Confidence 4455678899999999999999998852 3457788889999999999999999999999887 67789999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 005905 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266 (670)
Q Consensus 237 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 266 (670)
...|++++|...|++....... +...+..
T Consensus 89 ~~~g~~~eA~~~~~~a~~~~p~-~~~~~~~ 117 (159)
T d1a17a_ 89 MALGKFRAALRDYETVVKVKPH-DKDAKMK 117 (159)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCC-CHHHHHH
Confidence 9999999999999999887533 4444433
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.91 E-value=6.9e-05 Score=67.18 Aligned_cols=99 Identities=6% Similarity=-0.083 Sum_probs=87.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 005905 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231 (670)
Q Consensus 152 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 231 (670)
|+...+-.....|.+.|++++|+..|.+..... +.+...|..+..+|.+.|++++|+..|+...+.. +.+..+|..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~---p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~ 77 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN---PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFF 77 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHH
Confidence 667777788899999999999999999988752 3457788899999999999999999999998765 557889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 005905 232 AINCCSQTGDWEFACSVYDDMTK 254 (670)
Q Consensus 232 li~~~~~~g~~~~A~~l~~~m~~ 254 (670)
+..+|.+.|++++|+..|++..+
T Consensus 78 lg~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 78 LGQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999998765
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.77 E-value=0.015 Score=53.77 Aligned_cols=225 Identities=12% Similarity=-0.011 Sum_probs=158.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHH
Q 005905 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN----AGQVDRAREVYKMIHKYNIKGTPEV 228 (670)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~ 228 (670)
|+..+..|...+.+.+++++|++.|++..+.+ |...+..|...|.. ..++..|...+......+. +..
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g-----~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~---~~a 72 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK-----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY---SNG 72 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc---cch
Confidence 45567777788888999999999999997752 45566667777765 5689999999988887663 455
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCChHHHHHHHHHHHHCCCCccHHHHH
Q 005905 229 YTIAINCCSQ----TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG----HAGKVEAAFEILQEAKNQGISVGIISYS 300 (670)
Q Consensus 229 ~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~----~~g~~~~A~~i~~~m~~~~~~~~~~~~~ 300 (670)
...+...+.. ..+.+.|...++...+.|.. .....+...+. .......+...+......+ +...+.
T Consensus 73 ~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~ 146 (265)
T d1ouva_ 73 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 146 (265)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred hhccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhh
Confidence 5555555443 46788899999988887753 22233333333 2345677778877776654 466677
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 005905 301 SLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKSLGLCPNTITYSIL 372 (670)
Q Consensus 301 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 372 (670)
.|...|.. ..+...+...++...+.| +..+...+-..|.. ..+.++|+..|.+..+.| +...+..|
T Consensus 147 ~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~L 220 (265)
T d1ouva_ 147 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNL 220 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred hhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHH
Confidence 77777775 466788888888877643 66666667666665 568999999999998876 34444455
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCC
Q 005905 373 LVACER----KDDVEVGLMLLSQAKEDGV 397 (670)
Q Consensus 373 l~a~~~----~g~~~~a~~~~~~m~~~g~ 397 (670)
-..|.+ ..+.++|.++|++..+.|-
T Consensus 221 G~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 221 GAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 555543 3478889999998888773
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.75 E-value=8.3e-05 Score=60.72 Aligned_cols=24 Identities=8% Similarity=0.062 Sum_probs=9.8
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHh
Q 005905 336 ALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 336 ~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
.+..+|.+.|++++|++.|++..+
T Consensus 77 ~Lg~~y~~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 77 YLAVGNYRLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333344444444444444444433
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.72 E-value=0.00016 Score=58.02 Aligned_cols=87 Identities=8% Similarity=-0.080 Sum_probs=51.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 005905 161 ITACGQSGAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 239 (670)
Q Consensus 161 i~~~~~~g~~~~A~~l~~~m~~~~~~~~p-d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 239 (670)
...+.+.|++++|+..|++.... .| +...|..+..++.+.|++++|+..|+...+.+ +.+..+|..+...|...
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQK----EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhccc----ccccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHC
Confidence 44455566666666666666553 23 34555556666666666666666666665554 44556666666666666
Q ss_pred CCHHHHHHHHHHH
Q 005905 240 GDWEFACSVYDDM 252 (670)
Q Consensus 240 g~~~~A~~l~~~m 252 (670)
|++++|++.|++.
T Consensus 98 g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 98 HNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 6666666666553
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.71 E-value=0.00012 Score=59.75 Aligned_cols=108 Identities=14% Similarity=0.063 Sum_probs=84.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC---hhHHHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 005905 300 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ---LPKTMEVLSDMKSLGLCPNT-ITYSILLVA 375 (670)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a 375 (670)
..++..+...+++++|++.|++....+ +.+..++..+..++.+.++ +++|+.+|++.......|+. .++..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 457778889999999999999998876 4578888889999887655 45699999998875433432 367778889
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005905 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 410 (670)
Q Consensus 376 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 410 (670)
|.+.|++++|.++|+++++. .|+..-...+...
T Consensus 82 y~~~g~~~~A~~~~~~aL~~--~P~~~~A~~l~~~ 114 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT--EPQNNQAKELERL 114 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh--CcCCHHHHHHHHH
Confidence 99999999999999999984 4776655555443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.67 E-value=0.00024 Score=56.86 Aligned_cols=89 Identities=10% Similarity=-0.023 Sum_probs=57.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005905 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 276 (670)
Q Consensus 197 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~ 276 (670)
+...+.+.|++++|...|++..+.. +-+..+|..+..+|.+.|++++|+..|++..+.... +...+..+...|...|+
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCCC
Confidence 3445666677777777777766654 445666777777777777777777777776665433 55566666666666666
Q ss_pred hHHHHHHHHHH
Q 005905 277 VEAAFEILQEA 287 (670)
Q Consensus 277 ~~~A~~i~~~m 287 (670)
.++|.+.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666553
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.56 E-value=0.0018 Score=55.92 Aligned_cols=98 Identities=9% Similarity=0.020 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 005905 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-------------HITIGALMKACANAGQVDRAREVYKMIHKYNI 222 (670)
Q Consensus 156 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd-------------~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 222 (670)
.+......|.+.|++++|+..|.+..... +..+. ..+|+.+..+|.+.|++++|+..++...+.+
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~- 92 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD- 92 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh-hhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc-
Confidence 34455667888888888888888776531 11111 1123333344444444444444444444443
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 223 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255 (670)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 255 (670)
|.++.+|..+..+|...|++++|...|++..+.
T Consensus 93 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 93 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 334444444444444444444444444444443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.53 E-value=0.0017 Score=56.08 Aligned_cols=111 Identities=13% Similarity=-0.027 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005905 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272 (670)
Q Consensus 193 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 272 (670)
.+......+.+.|++++|+..|.+..+....... ....-......+. ..+|..+..+|.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~--------------~~~~~~~~~~~~~-------~~~~~nla~~y~ 73 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS--------------FSNEEAQKAQALR-------LASHLNLAMCHL 73 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC--------------CCSHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccc--------------cchHHHhhhchhH-------HHHHHHHHHHHH
Confidence 3445566788889999999988877654211000 0000000000000 123444555555
Q ss_pred hcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 005905 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325 (670)
Q Consensus 273 ~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 325 (670)
+.|++++|...++..++.. +.++.++..+..+|...|++++|...|+...+.
T Consensus 74 k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 74 KLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 6666666666666555544 334555555666666666666666666665554
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.45 E-value=0.0022 Score=55.25 Aligned_cols=128 Identities=8% Similarity=-0.074 Sum_probs=84.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005905 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAF 174 (670)
Q Consensus 95 y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 174 (670)
+......+...|++++|+..|.+++.. ................-+.+...|+.+..+|.+.|++++|+
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai 97 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAV 97 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhh
Confidence 345566677889999999998887642 01111111111111111224556777888888899999999
Q ss_pred HHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005905 175 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 238 (670)
Q Consensus 175 ~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 238 (670)
..|.+..+.. +.+...|..+..++...|++++|.+.|+...+.. +.+..++..+..+..+
T Consensus 98 ~~~~~al~~~---p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~~~~ 157 (169)
T d1ihga1 98 DSCLEALEID---PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQK 157 (169)
T ss_dssp HHHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhh---hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 9999888742 3346678888888889999999999998888875 4566666666555433
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.40 E-value=0.062 Score=51.23 Aligned_cols=126 Identities=12% Similarity=0.113 Sum_probs=82.7
Q ss_pred HHHHHHhhhhhHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 005905 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145 (670)
Q Consensus 66 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~ 145 (670)
.++..|.+.|.++.|..+|..+. -|..++..+.+.++++.|.+++.+. -+..+|..+...|........
T Consensus 19 ~i~~~c~~~~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e~~l 87 (336)
T d1b89a_ 19 QVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRL 87 (336)
T ss_dssp ----------CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCcHHHH
Confidence 36777888888888888887653 3567778888888888888776543 256688888888887776553
Q ss_pred H--Hh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcC
Q 005905 146 M--FE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205 (670)
Q Consensus 146 ~--~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g 205 (670)
+ .. ....+......++..|-..|.+++.+.+++..... -.++...++.++..|++.+
T Consensus 88 a~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~---~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 88 AQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL---ERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---TTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC---CccchHHHHHHHHHHHHhC
Confidence 2 11 22345555567888888999999999999877543 2456667778888888754
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.37 E-value=0.0048 Score=52.05 Aligned_cols=100 Identities=10% Similarity=-0.124 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC--CCCH-----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 005905 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPV--DPDH-----------ITIGALMKACANAGQVDRAREVYKMIHKYN 221 (670)
Q Consensus 155 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~--~pd~-----------~t~~~li~~~~~~g~~~~A~~~~~~m~~~~ 221 (670)
..+......+.+.|++.+|+..|.+....-... .++. .+|..+..+|.+.|++++|++.+..+.+.+
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~ 97 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 97 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc
Confidence 345556677888899999999998876531000 1111 123334444444455555555554444443
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 222 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255 (670)
Q Consensus 222 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 255 (670)
+.+..+|..+..+|...|++++|+..|++..+.
T Consensus 98 -p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 98 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 334444444455555555555555555444443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.35 E-value=0.0014 Score=53.71 Aligned_cols=56 Identities=13% Similarity=0.119 Sum_probs=25.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005905 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253 (670)
Q Consensus 197 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 253 (670)
+...+.+.|++++|+..|.+..+.+ +.+..+|..+..+|.+.|++++|+..+++++
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 65 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHH
Confidence 3344444444444444444444443 3344444444444444444444444444443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.31 E-value=0.0027 Score=55.28 Aligned_cols=123 Identities=13% Similarity=0.024 Sum_probs=67.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005905 159 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 238 (670)
Q Consensus 159 ~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 238 (670)
.........|++++|.+.|.+......|-.... ....+-+...-..+.... ...+..+...+..
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~------------~~~~~w~~~~r~~l~~~~----~~a~~~la~~~~~ 79 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDD------------LRDFQFVEPFATALVEDK----VLAHTAKAEAEIA 79 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG------------GTTSTTHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCccccccc------------CcchHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 344577889999999999999876422211000 000000000011111111 2445556666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCccHHH
Q 005905 239 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN-----QGISVGIIS 298 (670)
Q Consensus 239 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~-----~~~~~~~~~ 298 (670)
.|++++|+..++++++.... +...|..++.+|...|+..+|++.|+++.+ .|+.|...+
T Consensus 80 ~g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 80 CGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred CCCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 66666666666666665443 666666666666666666666666666532 466665543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.30 E-value=0.064 Score=49.21 Aligned_cols=229 Identities=12% Similarity=0.009 Sum_probs=144.7
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCH
Q 005905 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAV 170 (670)
Q Consensus 91 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 170 (670)
|+..+..|...+...+++++|++.|++..+.| |...+..|-.+|..-. + ...+.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~-------~----------------~~~d~ 54 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQ-------G----------------VEKNL 54 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS-------S----------------SCCCH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC-------C----------------cchhH
Confidence 44566677777788899999999999988875 4444444444443211 0 13355
Q ss_pred HHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCH
Q 005905 171 DRAFDVLAEMNAEVHPVDPDHITIGALMKACAN----AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ----TGDW 242 (670)
Q Consensus 171 ~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~ 242 (670)
..|...+......+ +......+...+.. ..+.+.|...++.....|. ......+...+.. ....
T Consensus 55 ~~a~~~~~~a~~~~-----~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~ 126 (265)
T d1ouva_ 55 KKAASFYAKACDLN-----YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDF 126 (265)
T ss_dssp HHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCH
T ss_pred HHHHHhhccccccc-----ccchhhccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchh
Confidence 66666666665431 22333333333332 4567778888877777653 2333333333332 3456
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh----cCCHHH
Q 005905 243 EFACSVYDDMTKKGVIPDEVFLSALIDFAGH----AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQK 314 (670)
Q Consensus 243 ~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~ 314 (670)
..+...+......+ +...+..+...|.. ..+...+...+....+.| +......+..+|.. ..++++
T Consensus 127 ~~a~~~~~~~~~~~---~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~ 200 (265)
T d1ouva_ 127 KKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKE 200 (265)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred HHHHHHhhhhhccc---ccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhh
Confidence 66777777666543 55666667666664 456677788888777766 45555556666655 568999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCChhHHHHHHHHHHhCCC
Q 005905 315 ALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKSLGL 362 (670)
Q Consensus 315 A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~ 362 (670)
|...|....+.| ++..+..|...|.+ ..+.++|.+.|++....|.
T Consensus 201 A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 201 ALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 999999988865 56677777777765 3478889999988877663
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.22 E-value=0.077 Score=50.51 Aligned_cols=143 Identities=12% Similarity=0.094 Sum_probs=85.2
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcC--CCCHHHHHHHHHHHHh
Q 005905 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENV--KPDRVVFNALITACGQ 166 (670)
Q Consensus 89 ~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~--~~~~~~~~~li~~~~~ 166 (670)
.||..--..+..-|.+.|.++.|..+|..+.. |..++..|.+.+++..+++.. .-+..+|..+...+.+
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~~~~~~k~~~~~l~~ 81 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVD 81 (336)
T ss_dssp CC----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45555555677888899999999999875432 566777778888888776632 2366788888888887
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005905 167 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246 (670)
Q Consensus 167 ~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 246 (670)
.....-|. +.. .....+......++..|-..|.+++...+++...... ..+...++.++..|++.+ .++..
T Consensus 82 ~~e~~la~-----i~~--~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~-~~kl~ 152 (336)
T d1b89a_ 82 GKEFRLAQ-----MCG--LHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMR 152 (336)
T ss_dssp TTCHHHHH-----HTT--TTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-HHHHH
T ss_pred CcHHHHHH-----HHH--HHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC-hHHHH
Confidence 77665432 211 1233455566678888888888888888888765443 556677888888888754 33433
Q ss_pred HHH
Q 005905 247 SVY 249 (670)
Q Consensus 247 ~l~ 249 (670)
+.+
T Consensus 153 e~l 155 (336)
T d1b89a_ 153 EHL 155 (336)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.18 E-value=0.0086 Score=50.37 Aligned_cols=119 Identities=11% Similarity=0.008 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005905 193 TIGALMKACANAGQVDRAREVYKMIHKYNIK----GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268 (670)
Q Consensus 193 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li 268 (670)
.+..-...+.+.|++++|...|.+....-.. ++.... .....+ ...+|..+.
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~-----------------~~~~~~-------~~~~~~Nla 74 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILL-----------------DKKKNI-------EISCNLNLA 74 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHH-----------------HHHHHH-------HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHH-----------------HhhhhH-------HHHHHhhHH
Confidence 3444556777888999999888887653110 111100 000000 123556666
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 005905 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 337 (670)
Q Consensus 269 ~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 337 (670)
.+|.+.|++++|++.+..+.+.. +.++.+|..+..+|...|++++|...|++..+..+. |....+.+
T Consensus 75 ~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~-n~~~~~~l 141 (153)
T d2fbna1 75 TCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSY 141 (153)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHH
T ss_pred HHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 77777777777777777777665 556677777777777777777777777777765422 44444443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.18 E-value=0.0029 Score=54.52 Aligned_cols=59 Identities=12% Similarity=0.040 Sum_probs=25.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 005905 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325 (670)
Q Consensus 266 ~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 325 (670)
.+..++.+.|++++|+..+..+.+.. +.+..+|..+..+|.+.|++++|...|++..+.
T Consensus 82 nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 82 NIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 33344444444444444444444433 233444444444444444444444444444433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.18 E-value=0.0082 Score=51.43 Aligned_cols=99 Identities=8% Similarity=-0.026 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCCCH-----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 005905 156 VFNALITACGQSGAVDRAFDVLAEMNAEVH-PVDPDH-----------ITIGALMKACANAGQVDRAREVYKMIHKYNIK 223 (670)
Q Consensus 156 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-~~~pd~-----------~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 223 (670)
.+......+.+.|++++|+..|.+....-. ....+. ..|+.+..+|.+.|++++|+..+....+.+ +
T Consensus 17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p 95 (168)
T d1kt1a1 17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-S 95 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc-c
Confidence 345556677778888888888876553200 000100 112223333444444444444444444433 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 224 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255 (670)
Q Consensus 224 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 255 (670)
.+..+|..+..+|...|++++|...|.+.++.
T Consensus 96 ~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 96 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34444444444444444444444444444443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.16 E-value=0.003 Score=51.47 Aligned_cols=94 Identities=13% Similarity=0.170 Sum_probs=59.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---Cc--c-HHHHHHHH
Q 005905 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI---SV--G-IISYSSLM 303 (670)
Q Consensus 230 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~---~~--~-~~~~~~li 303 (670)
..+-..|.+.|++++|+..|.+.++.+.. +...+..+..+|.+.|++++|...+..+++... .. . ..+|..+.
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 34556677777777777777777766543 566677777777777777777777777654320 00 0 23555666
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 005905 304 GACSNAKNWQKALELYEHMKS 324 (670)
Q Consensus 304 ~~~~~~g~~~~A~~~~~~m~~ 324 (670)
..+...+++++|...|++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 666666777777777666544
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.15 E-value=0.0038 Score=54.30 Aligned_cols=59 Identities=12% Similarity=0.018 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 005905 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357 (670)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 357 (670)
.+..+...+.+.|++++|...++.+.+.. +-+...|..++.+|...|+..+|++.|+++
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34445555555555555555555554443 224555555555555555555555555554
|
| >d2d9ia1 d.68.8.1 (A:8-90) Nedd4-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: IF3-like superfamily: SMR domain-like family: Smr domain domain: Nedd4-binding protein 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.13 E-value=0.00068 Score=50.49 Aligned_cols=79 Identities=15% Similarity=0.217 Sum_probs=57.2
Q ss_pred eeccccCcchhhHHHHHHHHHHHHHhhhhCCCCCCceEeccCccceeecCCCcchhhhhHhhhHHHHHHHHHhCCCCCCC
Q 005905 535 VVDARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQGN 614 (670)
Q Consensus 535 ~~~~~~~~~~~~~i~~l~~l~~l~~~~~~~~~~p~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~p~~~~ 614 (670)
.+|+|+++...|.-.+..+|......+..... ...+ .|+||+|.|+..-.+.++.+|...|++-+..|.+.
T Consensus 3 ~iDLHG~~~~eA~~~l~~~l~~~~~~~~~~~~---~~~l------~IItG~G~hS~~g~~~lk~~V~~~L~~~~~~~~e~ 73 (83)
T d2d9ia1 3 VLDLHGLHVDEALEHLMRVLEKKTEEFKQNGG---KPYL------SVITGRGNHSQGGVARIKPAVIKYLISHSFRFSEI 73 (83)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHHHTTC---CSEE------EEECCCSGGGTTCTTCHHHHHHHHHHHTTCCEECC
T ss_pred eEECCCCCHHHHHHHHHHHHHHHHHhhhhcCC---ceEE------EEEECCCCCCCCCcchHHHHHHHHHHHCCCceecC
Confidence 57999999998887766677665554433322 2222 58899999976444559999999999999888643
Q ss_pred CccceEEec
Q 005905 615 GSYGKIRIN 623 (670)
Q Consensus 615 ~~~g~~~~~ 623 (670)
..|.|.+.
T Consensus 74 -~~G~~~V~ 81 (83)
T d2d9ia1 74 -KPGCLKVM 81 (83)
T ss_dssp -STTCEEEE
T ss_pred -CCcEEEEE
Confidence 34998864
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.02 E-value=0.0062 Score=52.23 Aligned_cols=122 Identities=10% Similarity=-0.029 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005905 193 TIGALMKACANAGQVDRAREVYKMIHKY---NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269 (670)
Q Consensus 193 t~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~ 269 (670)
.+.-....+.+.|++++|...|...... ....+... ......+ ...+|..+..
T Consensus 17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~-----------------~~~~~~~-------~~~~~~Nla~ 72 (168)
T d1kt1a1 17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKE-----------------SKASESF-------LLAAFLNLAM 72 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHH-----------------HHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhh-----------------hhhcchh-------HHHHHHhHHH
Confidence 4555667788999999999999876542 11111100 0001111 0123444555
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005905 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 340 (670)
Q Consensus 270 ~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 340 (670)
+|.+.|++++|+..+....+.. +.+...|..+..+|...|++++|...|+.+.+..+ .+...+..+-..
T Consensus 73 ~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P-~n~~~~~~l~~~ 141 (168)
T d1kt1a1 73 CYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQIFMC 141 (168)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHH
T ss_pred HHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 5566666666666666665544 44555566666666666666666666666665532 244444443333
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.84 E-value=0.00082 Score=62.78 Aligned_cols=119 Identities=13% Similarity=0.046 Sum_probs=51.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 005905 239 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318 (670)
Q Consensus 239 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 318 (670)
.|++++|+..+++.++.... |...+..+...++..|++++|.+.++...+.. +-+...+..+...+...+..+++..-
T Consensus 9 ~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a~~~ 86 (264)
T d1zbpa1 9 EGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDFAQG 86 (264)
T ss_dssp TTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHHHHH
Confidence 34444444444444444332 44444444444444444444444444444432 11223333333333333333333222
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 319 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
+......+..++...+......+...|+.++|.+++.+..+
T Consensus 87 ~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e 127 (264)
T d1zbpa1 87 AATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 127 (264)
T ss_dssp CCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 11111111122233334445556667777777777777665
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.82 E-value=0.0021 Score=53.87 Aligned_cols=76 Identities=14% Similarity=0.092 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC-----------hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 005905 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ-----------LPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380 (670)
Q Consensus 312 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-----------~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 380 (670)
+++|...|++..+.. +.+..+|..+..+|...|+ +++|.+.|++..+ +.|+..+|..-+..+
T Consensus 57 ~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~---- 129 (145)
T d1zu2a1 57 IQEAITKFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT---- 129 (145)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHhc-chhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHH----
Confidence 455666666665554 2355566666665554332 3555555555554 345555544443333
Q ss_pred CHHHHHHHHHHHHHCC
Q 005905 381 DVEVGLMLLSQAKEDG 396 (670)
Q Consensus 381 ~~~~a~~~~~~m~~~g 396 (670)
..+.+++.+..+.|
T Consensus 130 --~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 130 --AKAPQLHAEAYKQG 143 (145)
T ss_dssp --HTHHHHHHHHHHSS
T ss_pred --HHHHHHHHHHHHHh
Confidence 23444444444443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.79 E-value=0.0039 Score=52.12 Aligned_cols=116 Identities=10% Similarity=0.049 Sum_probs=71.4
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005905 164 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA----------GQVDRAREVYKMIHKYNIKGTPEVYTIAI 233 (670)
Q Consensus 164 ~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~~~~~~~~~li 233 (670)
|-+.+.+++|+..|+...+.. +.+...+..+..+|... +.+++|+..|++..+.+ +.+..+|..+.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~---P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG 82 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN---PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIG 82 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC---CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHH
Confidence 445566888888888887752 33455666666666533 44577888888888766 56677787777
Q ss_pred HHHHhcCC-----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 005905 234 NCCSQTGD-----------WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291 (670)
Q Consensus 234 ~~~~~~g~-----------~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~ 291 (670)
.+|...|+ +++|.+.|++..+. .|+..++..-+..+ .+|.+++.+..+.|
T Consensus 83 ~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~------~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 83 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT------AKAPQLHAEAYKQG 143 (145)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred HHHHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH------HHHHHHHHHHHHHh
Confidence 77766543 45566666666554 34444444333333 34555555555554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.72 E-value=0.00085 Score=69.38 Aligned_cols=110 Identities=10% Similarity=-0.098 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005905 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272 (670)
Q Consensus 193 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 272 (670)
.+..+...+.+.|+.+.|...+....+... ..++..+.+.+...|++++|...|.+..+.... +...|+.+...+.
T Consensus 122 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~ 197 (497)
T d1ya0a1 122 KSSQLGIISNKQTHTSAIVKPQSSSCSYIC---QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILAS 197 (497)
T ss_dssp ---------------------CCHHHHHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHH
T ss_pred HHHHhHHHHHhCCCHHHHHHHHHHHhCCCH---HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence 344444455555555555555544333211 134444555555556666666666655554332 3455555555555
Q ss_pred hcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHH
Q 005905 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307 (670)
Q Consensus 273 ~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~ 307 (670)
..|+..+|...|.+..... +|-..++..|...|.
T Consensus 198 ~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 198 SKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALS 231 (497)
T ss_dssp HTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHH
Confidence 6666666666555555544 344555555554443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.64 E-value=0.0012 Score=61.63 Aligned_cols=123 Identities=16% Similarity=0.047 Sum_probs=78.9
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHH
Q 005905 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 350 (670)
Q Consensus 271 ~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 350 (670)
..+.|++++|...+++.++.. +.|...+..+...|+..|++++|.+.|+...+... -+...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P-~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP-EYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHhccccHHH
Confidence 346789999999999998886 67788899999999999999999999998887642 2344554444444332222222
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 351 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 351 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 395 (670)
..-...-...+-+++...+......+...|+.++|...+..+.+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 211111011111122333444455677889999999888877663
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.63 E-value=0.0034 Score=64.63 Aligned_cols=136 Identities=12% Similarity=-0.031 Sum_probs=83.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 005905 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 283 (670)
Q Consensus 204 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i 283 (670)
.+.++.|+..+....+.. +++...+..+...+.+.|+.++|...+....... ...++..+...+...+++++|...
T Consensus 99 ~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~ 174 (497)
T d1ya0a1 99 SGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESY 174 (497)
T ss_dssp HHHHHHHHHHHTC--------------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHH
Confidence 345555555554443332 3445677788888889999999988887765432 135677888899999999999999
Q ss_pred HHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 005905 284 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 345 (670)
Q Consensus 284 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 345 (670)
|.+..+.. +-+...|+.|...|...|+..+|...|.+..... .|...++..|...|.+..
T Consensus 175 y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 175 YRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHhh
Confidence 99999875 5667899999999999999999999999988776 578889999988876543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.34 E-value=0.026 Score=47.43 Aligned_cols=98 Identities=15% Similarity=0.050 Sum_probs=60.1
Q ss_pred HHHHHH--HHHHHhcCCHHHHHHHHHHHhhCCCCCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Q 005905 155 VVFNAL--ITACGQSGAVDRAFDVLAEMNAEVHPVDPD----------HITIGALMKACANAGQVDRAREVYKMIHKY-- 220 (670)
Q Consensus 155 ~~~~~l--i~~~~~~g~~~~A~~l~~~m~~~~~~~~pd----------~~t~~~li~~~~~~g~~~~A~~~~~~m~~~-- 220 (670)
.+|..+ ...+.+.|++++|+..|++....... .|+ ...|+.+..+|...|++++|.+.+++..+.
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~-~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~ 86 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHT-MPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 86 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT-SCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChh-hhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence 355555 44556678888888888887653211 121 345667777777788887777777766542
Q ss_pred ---CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005905 221 ---NIKGT-----PEVYTIAINCCSQTGDWEFACSVYDDMT 253 (670)
Q Consensus 221 ---~~~~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~ 253 (670)
...++ ..+++.+..+|...|++++|+..|++..
T Consensus 87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 87 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 1235556666777777777777776654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=95.91 E-value=0.066 Score=44.68 Aligned_cols=97 Identities=12% Similarity=0.050 Sum_probs=63.8
Q ss_pred HHHHH--HHHHHhcCCHHHHHHHHHHHHhCCC-CC----------CHHHHHHHHHHHHhCCChhHHHHHHHHHHhC----
Q 005905 298 SYSSL--MGACSNAKNWQKALELYEHMKSIKL-KP----------TVSTMNALITALCDGDQLPKTMEVLSDMKSL---- 360 (670)
Q Consensus 298 ~~~~l--i~~~~~~g~~~~A~~~~~~m~~~~~-~p----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---- 360 (670)
+|..+ ...+...|++++|...|++..+... .| ....|+.+..+|...|++++|++.+++....
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 44444 4455566777777777777664211 11 1356777888888888888888877776531
Q ss_pred -CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 361 -GLCPN-----TITYSILLVACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 361 -g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 394 (670)
...++ ...|..+-.+|...|++++|+..|++..+
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222 22456667788999999999999988764
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.23 E-value=0.065 Score=40.38 Aligned_cols=63 Identities=13% Similarity=0.025 Sum_probs=31.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCC---CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 005905 159 ALITACGQSGAVDRAFDVLAEMNAEV---HPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYN 221 (670)
Q Consensus 159 ~li~~~~~~g~~~~A~~l~~~m~~~~---~~~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~ 221 (670)
.+...+.+.|++++|+..|++..+.. ....++ ..++..+..++.+.|++++|...|+++.+.+
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 44555556666666666655544320 001111 2345555555555566666666655555544
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.09 E-value=0.075 Score=40.04 Aligned_cols=73 Identities=10% Similarity=-0.101 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 005905 193 TIGALMKACANAGQVDRAREVYKMIHKYN-----IKG-TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266 (670)
Q Consensus 193 t~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 266 (670)
.+-.+...+.+.|+++.|...|++..+.. ..+ ...+++.+..+|.+.|++++|+..+++.++..+. +..+++.
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~-~~~a~~N 85 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE-HQRANGN 85 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC-CHHHHHH
Confidence 44466777888888888888887775531 111 2456777888888888888888888888776533 3444433
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.90 E-value=0.86 Score=36.19 Aligned_cols=14 Identities=21% Similarity=0.349 Sum_probs=6.4
Q ss_pred CHHHHHHHHHHHHh
Q 005905 311 NWQKALELYEHMKS 324 (670)
Q Consensus 311 ~~~~A~~~~~~m~~ 324 (670)
+.++|.+.|++..+
T Consensus 74 d~~~A~~~~~~aa~ 87 (133)
T d1klxa_ 74 DLRKAAQYYSKACG 87 (133)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhhhhc
Confidence 34444444444443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.09 E-value=1.5 Score=34.04 Aligned_cols=138 Identities=14% Similarity=0.041 Sum_probs=87.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 005905 239 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318 (670)
Q Consensus 239 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 318 (670)
.|..++..++..+..... +..-|+-+|--....-+-+...++++.+-+ -.| ...|++.......
T Consensus 15 dG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~---~FD----------ls~C~Nlk~vv~C 78 (161)
T d1wy6a1 15 DGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD----------LDKCQNLKSVVEC 78 (161)
T ss_dssp TTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC----------GGGCSCTHHHHHH
T ss_pred hhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhh---hcC----------chhhhcHHHHHHH
Confidence 455566666666555432 334444444333333344433333333221 111 1345555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 005905 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 398 (670)
Q Consensus 319 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~ 398 (670)
|-.+- .+...++..++.+..+|+-+.-.++++++.+. -+|+......+..||.+.|...++-.++.++-+.|++
T Consensus 79 ~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 79 GVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 54432 35556777788889999999999999997775 3788888889999999999999999999999888853
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=92.87 E-value=1.2 Score=35.27 Aligned_cols=81 Identities=12% Similarity=-0.047 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh----cCC
Q 005905 240 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH----AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKN 311 (670)
Q Consensus 240 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~----~g~ 311 (670)
.+.++|..++++..+.| +......|-..|.. ..+.++|.+.|+...+.| ++.....|..+|.. ..+
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence 34555555555555554 22333333333332 234566666666666655 23334444444443 345
Q ss_pred HHHHHHHHHHHHhCC
Q 005905 312 WQKALELYEHMKSIK 326 (670)
Q Consensus 312 ~~~A~~~~~~m~~~~ 326 (670)
.++|.+.|+...+.|
T Consensus 111 ~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 111 EKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 666666666655544
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=87.02 E-value=5.4 Score=30.78 Aligned_cols=85 Identities=16% Similarity=0.149 Sum_probs=56.6
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005905 166 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245 (670)
Q Consensus 166 ~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 245 (670)
.++++......|-.+- .+...+...++.....|+-|.-.+++..+.+.+ ++++...-.+..+|.+.|+..++
T Consensus 68 ~C~Nlk~vv~C~~~~n-------~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~ 139 (161)
T d1wy6a1 68 KCQNLKSVVECGVINN-------TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDA 139 (161)
T ss_dssp GCSCTHHHHHHHHHTT-------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhcHHHHHHHHHHhc-------chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhH
Confidence 3455566665555442 233455666777777777777777777766644 66777777777778888888888
Q ss_pred HHHHHHHHHCCCC
Q 005905 246 CSVYDDMTKKGVI 258 (670)
Q Consensus 246 ~~l~~~m~~~g~~ 258 (670)
-+++.+..+.|++
T Consensus 140 nell~~ACe~G~K 152 (161)
T d1wy6a1 140 TTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhHH
Confidence 8888777777765
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.11 E-value=11 Score=28.98 Aligned_cols=79 Identities=10% Similarity=0.057 Sum_probs=44.4
Q ss_pred CCCHHHHHHHHHHHHhCC---ChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 005905 328 KPTVSTMNALITALCDGD---QLPKTMEVLSDMKSLGLCPNT-ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 403 (670)
Q Consensus 328 ~p~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 403 (670)
.+.+.|--....++++.. +.++++.+|++..+.+ +.+. ..+-.+.-+|.+.|++++|.++++.+.+ +.|+-.-
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n~q 108 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQ 108 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCcHH
Confidence 344445444555555443 3456777777766532 2232 3444555567777777777777777776 3465544
Q ss_pred HHHHHH
Q 005905 404 FKCIIG 409 (670)
Q Consensus 404 ~~~li~ 409 (670)
...+-.
T Consensus 109 A~~L~~ 114 (124)
T d2pqrb1 109 VGALKS 114 (124)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
|