Citrus Sinensis ID: 005912
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 670 | 2.2.26 [Sep-21-2011] | |||||||
| Q9CAM8 | 629 | Pentatricopeptide repeat- | no | no | 0.294 | 0.313 | 0.277 | 1e-06 | |
| Q9SXD8 | 634 | Pentatricopeptide repeat- | no | no | 0.167 | 0.176 | 0.325 | 4e-05 | |
| P0C894 | 761 | Putative pentatricopeptid | no | no | 0.214 | 0.189 | 0.267 | 8e-05 | |
| Q9SIC9 | 918 | Pentatricopeptide repeat- | no | no | 0.231 | 0.168 | 0.272 | 0.0001 | |
| Q8S9D1 | 831 | Pentatricopeptide repeat- | no | no | 0.173 | 0.139 | 0.278 | 0.0001 | |
| Q9C8T7 | 559 | Pentatricopeptide repeat- | no | no | 0.167 | 0.200 | 0.317 | 0.0002 | |
| Q9LYZ9 | 819 | Pentatricopeptide repeat- | no | no | 0.214 | 0.175 | 0.273 | 0.0002 | |
| O64624 | 822 | Pentatricopeptide repeat- | no | no | 0.235 | 0.192 | 0.275 | 0.0003 | |
| Q9ZU27 | 650 | Pentatricopeptide repeat- | no | no | 0.179 | 0.184 | 0.275 | 0.0003 | |
| Q9FGR7 | 723 | Pentatricopeptide repeat- | no | no | 0.165 | 0.153 | 0.308 | 0.0004 |
| >sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150 OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 98/227 (43%), Gaps = 30/227 (13%)
Query: 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 65
CK GD AL + +MEAA A FN ++ EVA F ME ++P
Sbjct: 234 CKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEME--TKGIRP 291
Query: 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTE 125
+ TYN +I +Y R D + LL M+E K++ PNV T+ L++ F K + E
Sbjct: 292 NVVTYNSLINCLC---NYGRWSDASRLLSNMLE--KKINPNVVTFNALIDAFFKEGKLVE 346
Query: 126 AIR-HFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM-AKDNQPV 183
A + H +Q + +N L + C R+ E + + M +KD P
Sbjct: 347 AEKLHEEMIQRSIDPDTITYN---------LLINGFCMHNRLDEAKQMFKFMVSKDCLPN 397
Query: 184 PPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGE 230
+ Y TL++ + + + E G E + R +S+ GL G
Sbjct: 398 I-------QTYNTLINGFCKC--KRVEDGVE---LFREMSQRGLVGN 432
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590 OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 11/123 (8%)
Query: 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV--AFATFENMEYGEDYM 63
CK GD AL + +MEAA A FN ++ + C V A F+ ME +
Sbjct: 236 CKRGDTDLALNLLNKMEAAKIEADVVIFNTII--DSLCKYRHVDDALNLFKEME--TKGI 291
Query: 64 KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAV 123
+P+ TY+ +I SY R D ++LL M+E K++ PN+ T+ L++ F K
Sbjct: 292 RPNVVTYSSLISCLC---SYGRWSDASQLLSDMIE--KKINPNLVTFNALIDAFVKEGKF 346
Query: 124 TEA 126
EA
Sbjct: 347 VEA 349
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 49.7 bits (117), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 69/161 (42%), Gaps = 17/161 (10%)
Query: 7 KAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD 66
K G + +M AG T F +N ++ C G E A FE M++ + PD
Sbjct: 239 KLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRG--LVPD 296
Query: 67 TETYNCVIQAYTRAESY-DRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTE 125
T TYN +I + + D V E+ M E P+V TY L+ CF K+ +
Sbjct: 297 TVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCE------PDVITYNALINCFCKFGKLPI 350
Query: 126 AIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRI 166
+ +R ++ G + N ++ S + A C+EG +
Sbjct: 351 GLEFYREMK----GNGLKPNVVSY----STLVDAFCKEGMM 383
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 75/176 (42%), Gaps = 21/176 (11%)
Query: 7 KAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD 66
KAG AL + EM G +N LLS G E A M +K D
Sbjct: 421 KAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREM--ASVGIKKD 478
Query: 67 TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEA 126
TYN ++ Y + YD V+ V M +H + PN+ TY+ L++ ++K EA
Sbjct: 479 VVTYNALLGGYGKQGKYDEVKKV---FTEMKREH--VLPNLLTYSTLIDGYSKGGLYKEA 533
Query: 127 IRHFRALQNYEGGTK---VLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKD 179
+ FR ++ G + VL+ S + ALC+ G + + ++ M K+
Sbjct: 534 MEIFREFKS--AGLRADVVLY---------SALIDALCKNGLVGSAVSLIDEMTKE 578
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8S9D1|PP395_ARATH Pentatricopeptide repeat-containing protein At5g21222 OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 6/122 (4%)
Query: 15 LEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVI 74
L + ++E G T FN +++ + G + A FE M+ E KP T+N +I
Sbjct: 374 LSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMK--ESGCKPTASTFNTLI 431
Query: 75 QAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 134
+ Y + ++++ + LL MM+ D + LQPN +T +LV+ + + EA +Q
Sbjct: 432 KGYGK---IGKLEESSRLLDMMLRD-EMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQ 487
Query: 135 NY 136
+Y
Sbjct: 488 SY 489
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330 OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 11/123 (8%)
Query: 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV--AFATFENMEYGEDYM 63
CK GD A + +MEAA A FN ++ + C V A F+ ME +
Sbjct: 161 CKRGDIDLAFNLLNKMEAAKIEADVVIFNTII--DSLCKYRHVDDALNLFKEME--TKGI 216
Query: 64 KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAV 123
+P+ TY+ +I SY R D ++LL M+E K++ PN+ T+ L++ F K
Sbjct: 217 RPNVVTYSSLISCLC---SYGRWSDASQLLSDMIE--KKINPNLVTFNALIDAFVKEGKF 271
Query: 124 TEA 126
EA
Sbjct: 272 VEA 274
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 65/161 (40%), Gaps = 17/161 (10%)
Query: 6 CKAGD-HSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK 64
CK G H A ++ EM+AAG +N LL P+ A M +
Sbjct: 289 CKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVL--NGFS 346
Query: 65 PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVT 124
P TYN +I AY R D + EL M E K +P+V TY L+ F + V
Sbjct: 347 PSIVTYNSLISAYARDGMLD---EAMELKNQMAE--KGTKPDVFTYTTLLSGFERAGKVE 401
Query: 125 EAIRHFRALQN---------YEGGTKVLHNEGNFGDPLSLY 156
A+ F ++N + K+ N G F + + ++
Sbjct: 402 SAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIF 442
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Arabidopsis thaliana (taxid: 3702) |
| >sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940 OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 78/174 (44%), Gaps = 16/174 (9%)
Query: 14 ALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCV 73
A E E+++ G T +N LL G+ A + + ME E+ D+ TYN +
Sbjct: 300 AKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEME--ENSCPADSVTYNEL 357
Query: 74 IQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL 133
+ AY RA V E++ K + PN TY +++ + K EA++ F ++
Sbjct: 358 VAAYVRAGFSKEAAGVIEMM-----TKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSM 412
Query: 134 QNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRA 187
+ E G + N + LSL L ++ R E+++ L M K N P RA
Sbjct: 413 K--EAG--CVPNTCTYNAVLSL----LGKKSRSNEMIKMLCDM-KSNGCSPNRA 457
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZU27|PPR76_ARATH Pentatricopeptide repeat-containing protein At1g51965, mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 7/127 (5%)
Query: 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 60
+IA + G+ A+ I E+E + +N L++C G + A F+ M+ E
Sbjct: 483 LIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQ--E 540
Query: 61 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY 120
+ PD TY+ +++ + + E RV+ L M+ K QPN+ TY +L++C K
Sbjct: 541 KGLNPDVVTYSTLMECFGKTE---RVEMAYSLFEEMLV--KGCQPNIVTYNILLDCLEKN 595
Query: 121 CAVTEAI 127
EA+
Sbjct: 596 GRTAEAV 602
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FGR7|PP426_ARATH Pentatricopeptide repeat-containing protein At5g50280, chloroplastic OS=Arabidopsis thaliana GN=EMB1006 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 9/120 (7%)
Query: 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 60
++ C G AL I EME G + T +N L+ E F M +
Sbjct: 350 LVKSFCDEGLKEEALVIQTEMEKKGIRSNTIVYNTLMDAYNKSNHIEEVEGLFTEMR--D 407
Query: 61 DYMKPDTETYNCVIQAYTRAESYDRVQ-DVAELLGMMVEDHKRLQPNVKTYALLVECFTK 119
+KP TYN ++ AY R R+Q D+ E L +ED L+PNVK+Y L+ + +
Sbjct: 408 KGLKPSAATYNILMDAYAR-----RMQPDIVETLLREMEDLG-LEPNVKSYTCLISAYGR 461
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Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 670 | ||||||
| 255562037 | 889 | pentatricopeptide repeat-containing prot | 0.986 | 0.743 | 0.816 | 0.0 | |
| 359476532 | 884 | PREDICTED: uncharacterized protein LOC10 | 1.0 | 0.757 | 0.811 | 0.0 | |
| 334185070 | 910 | plastid transcriptionally active 3 [Arab | 0.983 | 0.724 | 0.770 | 0.0 | |
| 297833108 | 914 | hypothetical protein ARALYDRAFT_477686 [ | 0.983 | 0.721 | 0.765 | 0.0 | |
| 6721160 | 913 | hypothetical protein [Arabidopsis thalia | 0.983 | 0.721 | 0.766 | 0.0 | |
| 356533668 | 887 | PREDICTED: uncharacterized protein LOC10 | 0.980 | 0.740 | 0.801 | 0.0 | |
| 356574857 | 887 | PREDICTED: uncharacterized protein LOC10 | 0.982 | 0.741 | 0.810 | 0.0 | |
| 224144652 | 887 | predicted protein [Populus trichocarpa] | 0.997 | 0.753 | 0.788 | 0.0 | |
| 357441259 | 2047 | Pentatricopeptide repeat-containing prot | 0.994 | 0.325 | 0.725 | 0.0 | |
| 357140590 | 885 | PREDICTED: uncharacterized protein LOC10 | 0.977 | 0.740 | 0.703 | 0.0 |
| >gi|255562037|ref|XP_002522027.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223538831|gb|EEF40431.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1106 bits (2861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 559/685 (81%), Positives = 610/685 (89%), Gaps = 24/685 (3%)
Query: 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYG- 59
MI EDCK GDHSNALEIAYEMEAAGRMATTFHFN LLS QATCGIPE+AFATFENMEYG
Sbjct: 211 MIEEDCKVGDHSNALEIAYEMEAAGRMATTFHFNCLLSVQATCGIPEIAFATFENMEYGG 270
Query: 60 EDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 119
E+YMKPDTETYN VIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV+TYALLVECFTK
Sbjct: 271 EEYMKPDTETYNWVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVRTYALLVECFTK 330
Query: 120 YCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKD 179
YC V EAIRHFRALQN+EGGTKVLH +GNFGDPLSLYLRALCREGRI+ELLEALEAM +D
Sbjct: 331 YCVVREAIRHFRALQNFEGGTKVLHYDGNFGDPLSLYLRALCREGRIVELLEALEAMGRD 390
Query: 180 NQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRG 239
NQP+PPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDY+ARY++EGGLTGERKRWVPRRG
Sbjct: 391 NQPIPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYVARYVAEGGLTGERKRWVPRRG 450
Query: 240 KTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVE 299
KTPLDPDA GFIYSNPMETSFKQRC+ED K +HRKLLRTL NEG A LG+ SESDY+RV
Sbjct: 451 KTPLDPDAAGFIYSNPMETSFKQRCIEDWKVHHRKLLRTLLNEGLAALGEASESDYLRVV 510
Query: 300 ERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSR 359
ERLKK+IKGP+Q+VLKPKAASKMVVSELKEEL+AQGLP DGTRNVLYQRVQKARRINRSR
Sbjct: 511 ERLKKIIKGPDQNVLKPKAASKMVVSELKEELEAQGLPIDGTRNVLYQRVQKARRINRSR 570
Query: 360 GRPLWVPPVEEEEEEVDEEVDELISRIKLEEGNTEFWKRRFLGEGLNGRHDKAVEMDESE 419
GRPLWVPPVEEEEEEVDEE+DE+ISRIKLEEGNTEFWKRRFLGEGLNG + + + + +SE
Sbjct: 571 GRPLWVPPVEEEEEEVDEELDEIISRIKLEEGNTEFWKRRFLGEGLNGSNLQPMSVAKSE 630
Query: 420 LSDVLDDDVTDVEYVAKDEEADE-------------EEEVEQAEPESQDVDR-VKEKLVE 465
L DVLDD V E+AD+ E EVE + E+QDVDR VKEK VE
Sbjct: 631 LPDVLDD-------VDAIEDADKEVEDEEADDEEEAEAEVEVEQTENQDVDRVVKEKEVE 683
Query: 466 AKKPLQMIGVQLLKDSDQTTTTSKRSMKRSSRM-VEDDDDEDWFPEDPFEAFKEMRKRKV 524
AKKPLQMIGVQLLKDSD TT SK+S +RS+R VEDD D+DWFPEDPFEAFKE+R+RKV
Sbjct: 684 AKKPLQMIGVQLLKDSDHLTTRSKKSKRRSARASVEDDADDDWFPEDPFEAFKELRERKV 743
Query: 525 FDVSDMYTIADAWGWTWEREITNRPPQKWSQEWEVELAIQIMLKVIELGGTPTIGDCAVI 584
FDV DMYTIAD WGWTWEREI NRPPQKWSQEWEVELAI++MLK +L GTPTIGDCA+I
Sbjct: 744 FDVEDMYTIADVWGWTWEREIKNRPPQKWSQEWEVELAIKLMLKA-QLSGTPTIGDCAMI 802
Query: 585 IRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGELDAAVAIVADMETTGI 644
+RAAIRAP+PSAFLKILQ THSLGY FGSPLYDE+ISLCLD+GELDAA+AIVAD+E+TGI
Sbjct: 803 LRAAIRAPMPSAFLKILQTTHSLGYTFGSPLYDEVISLCLDIGELDAAIAIVADLESTGI 862
Query: 645 AVPDQTLDRVITSRQTGETSVDDAS 669
VPDQTLDRVI++RQ + VD+ S
Sbjct: 863 TVPDQTLDRVISARQAADNPVDETS 887
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359476532|ref|XP_002268094.2| PREDICTED: uncharacterized protein LOC100241547 [Vitis vinifera] gi|296085161|emb|CBI28656.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1097 bits (2837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 545/672 (81%), Positives = 608/672 (90%), Gaps = 2/672 (0%)
Query: 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 60
+I EDCK GDHSNAL IAYEMEAAGRMATT+HFN LLS QATCGIPE+AFATFENMEYGE
Sbjct: 210 LIEEDCKVGDHSNALTIAYEMEAAGRMATTYHFNCLLSVQATCGIPEIAFATFENMEYGE 269
Query: 61 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY 120
DYMKPDTETYN VIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC TKY
Sbjct: 270 DYMKPDTETYNWVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECLTKY 329
Query: 121 CAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180
C V EAIRHFRAL+N+EGGTKVLH+EGNFGDPLSLYLRALCREGRI+ELL+ALEAMAKDN
Sbjct: 330 CVVREAIRHFRALKNFEGGTKVLHDEGNFGDPLSLYLRALCREGRIVELLDALEAMAKDN 389
Query: 181 QPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGK 240
QP+PPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYI+EGGLTG+RKRWVPRRGK
Sbjct: 390 QPIPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYIAEGGLTGDRKRWVPRRGK 449
Query: 241 TPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEE 300
TPLDPDA+GFIYSNPMETSFKQRCLED K YHRKLL+TL+NEG A LG+VSESDY+RVEE
Sbjct: 450 TPLDPDALGFIYSNPMETSFKQRCLEDWKMYHRKLLKTLRNEGLAALGEVSESDYIRVEE 509
Query: 301 RLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRG 360
RL+K+IKGP+Q+ LKPKAASKM+VSELKEEL+AQGLPTDGTRNVLYQRVQKARRINRSRG
Sbjct: 510 RLRKIIKGPDQNALKPKAASKMIVSELKEELEAQGLPTDGTRNVLYQRVQKARRINRSRG 569
Query: 361 RPLWVPPVEEEEEEVDEEVDELISRIKLEEGNTEFWKRRFLGEGLNGRHDKAVEMDESEL 420
RPLWVPPVEEEEEEVDEE+DELISRIKL+EGNTEFWKRRFLGE L K ++ + SEL
Sbjct: 570 RPLWVPPVEEEEEEVDEELDELISRIKLQEGNTEFWKRRFLGEDLTVGRGKPMDKENSEL 629
Query: 421 SDVLDD-DVTDVEYVAKDEEADEEEEVEQAEPESQDVDRVKEKLVEAKKPLQMIGVQLLK 479
DVLDD D+ + +++ +EEE E ESQ DRVK+K VEA KPLQMIGVQLLK
Sbjct: 630 PDVLDDADIGEDTAKEVEDDEADEEEEEVEPTESQVADRVKDKEVEAAKPLQMIGVQLLK 689
Query: 480 DSDQTTTTSKRSMKRSSRM-VEDDDDEDWFPEDPFEAFKEMRKRKVFDVSDMYTIADAWG 538
DSDQTT +++S ++ SR +ED DD+DWFP D EAFKEMR+RK+FDVSDMYTIAD WG
Sbjct: 690 DSDQTTPATRKSRRKLSRASMEDSDDDDWFPLDIHEAFKEMRERKIFDVSDMYTIADVWG 749
Query: 539 WTWEREITNRPPQKWSQEWEVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFL 598
WTWE+E+ N+PP+ W+QEWEVELAI++MLKVIELGGTPTIGDCA+I+RAAIRAPLPSAFL
Sbjct: 750 WTWEKELKNKPPRSWTQEWEVELAIKVMLKVIELGGTPTIGDCAMILRAAIRAPLPSAFL 809
Query: 599 KILQKTHSLGYVFGSPLYDEIISLCLDLGELDAAVAIVADMETTGIAVPDQTLDRVITSR 658
K+LQ TH LGYVFGSPLY+E+I LCLDLGELDAA+AIVADMET+GIAVPD+TLDRVI++R
Sbjct: 810 KVLQTTHKLGYVFGSPLYNEVIILCLDLGELDAAIAIVADMETSGIAVPDETLDRVISAR 869
Query: 659 QTGETSVDDASS 670
Q +T+ D +S
Sbjct: 870 QMIDTAATDDTS 881
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334185070|ref|NP_187076.2| plastid transcriptionally active 3 [Arabidopsis thaliana] gi|332640537|gb|AEE74058.1| plastid transcriptionally active 3 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1040 bits (2688), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 526/683 (77%), Positives = 588/683 (86%), Gaps = 24/683 (3%)
Query: 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 60
MI EDCKAGDHSNAL+I+YEMEAAGRMATTFHFN LLS QATCGIPEVA+ATFENMEYGE
Sbjct: 218 MIEEDCKAGDHSNALDISYEMEAAGRMATTFHFNCLLSVQATCGIPEVAYATFENMEYGE 277
Query: 61 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY 120
+MKPDTETYN VIQAYTRAESYDRVQDVAELLGMMVEDHKR+QPNVKTYALLVECFTKY
Sbjct: 278 VFMKPDTETYNWVIQAYTRAESYDRVQDVAELLGMMVEDHKRVQPNVKTYALLVECFTKY 337
Query: 121 CAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180
C V EAIRHFRAL+N+EGGT +LHN GNF DPLSLYLRALCREGRI+EL++AL+AM KDN
Sbjct: 338 CVVKEAIRHFRALKNFEGGTVILHNAGNFEDPLSLYLRALCREGRIVELIDALDAMRKDN 397
Query: 181 QPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGK 240
QP+PPRAMI+SRKYRTLVSSWIEPLQEEAELGYEIDY+ARYI EGGLTGERKRWVPRRGK
Sbjct: 398 QPIPPRAMIMSRKYRTLVSSWIEPLQEEAELGYEIDYLARYIEEGGLTGERKRWVPRRGK 457
Query: 241 TPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEE 300
TPLDPDA GFIYSNP+ETSFKQRCLED K +HRKLLRTLQ+EG VLGD SESDY+RV E
Sbjct: 458 TPLDPDASGFIYSNPIETSFKQRCLEDWKVHHRKLLRTLQSEGLPVLGDASESDYMRVVE 517
Query: 301 RLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRG 360
RL+ +IKGP ++LKPKAASKMVVSELKEEL+AQGLP DGTRNVLYQRVQKARRIN+SRG
Sbjct: 518 RLRNIIKGPALNLLKPKAASKMVVSELKEELEAQGLPIDGTRNVLYQRVQKARRINKSRG 577
Query: 361 RPLWVPPVEEEEEEVDEEVDELISRIKLEEGNTEFWKRRFLGEGLNGRHDKAVEMDESEL 420
RPLWVPP+EEEEEEVDEEVD+LI RIKL EG+TEFWKRRFLGEGL + +VE E+
Sbjct: 578 RPLWVPPIEEEEEEVDEEVDDLICRIKLHEGDTEFWKRRFLGEGL---IETSVESKETTE 634
Query: 421 SDVLDDDVTDVEYVAK-------------------DEEADEEEEVEQAEPESQDVDRVKE 461
S V + +E ++K DE +EE V + E ++ D VK
Sbjct: 635 SVVTGESEKAIEDISKEADNEEDDDEEEQEGDEDDDENEEEEVVVPETENRAEGEDLVKN 694
Query: 462 KLVEAKKPLQMIGVQLLKDSDQTTTTSKRSMKRSSRM-VEDDDDEDWFPEDPFEAFKEMR 520
K +AKK LQMIGVQLLK+SD+ T KR KR+SRM +EDD DEDWFPE+PFEAFKEMR
Sbjct: 695 KAADAKKHLQMIGVQLLKESDEANRTKKRG-KRASRMTLEDDADEDWFPEEPFEAFKEMR 753
Query: 521 KRKVFDVSDMYTIADAWGWTWEREITNRPPQKWSQEWEVELAIQIMLKVIELGGTPTIGD 580
+RKVFDV+DMYTIAD WGWTWE++ N+ P+KWSQEWEVELAI +M KVIELGG PTIGD
Sbjct: 754 ERKVFDVADMYTIADVWGWTWEKDFKNKTPRKWSQEWEVELAIVLMTKVIELGGIPTIGD 813
Query: 581 CAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGELDAAVAIVADME 640
CAVI+RAA+RAP+PSAFLKILQ THSLGY FGSPLYDEII+LCLDLGELDAA+AIVADME
Sbjct: 814 CAVILRAALRAPMPSAFLKILQTTHSLGYSFGSPLYDEIITLCLDLGELDAAIAIVADME 873
Query: 641 TTGIAVPDQTLDRVITSRQTGET 663
TTGI VPDQTLD+VI++RQ+ E+
Sbjct: 874 TTGITVPDQTLDKVISARQSNES 896
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297833108|ref|XP_002884436.1| hypothetical protein ARALYDRAFT_477686 [Arabidopsis lyrata subsp. lyrata] gi|297330276|gb|EFH60695.1| hypothetical protein ARALYDRAFT_477686 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1032 bits (2669), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 526/687 (76%), Positives = 587/687 (85%), Gaps = 28/687 (4%)
Query: 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 60
MI EDCKAGDHSNALEI+YEMEAAGRMATTFHFN LLS QATCGIPEVA+ATFENMEYGE
Sbjct: 218 MIEEDCKAGDHSNALEISYEMEAAGRMATTFHFNCLLSVQATCGIPEVAYATFENMEYGE 277
Query: 61 D-YMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 119
+MKPDTETYN VIQAYTRAESYDRVQDVAELLGMMVEDHKR+QPNVKTYALLVECFTK
Sbjct: 278 GLFMKPDTETYNWVIQAYTRAESYDRVQDVAELLGMMVEDHKRVQPNVKTYALLVECFTK 337
Query: 120 YCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKD 179
YC V EAIRHFRAL+N+EGGT +LHN G F DPLSLYLRALCREGRI+EL++AL+AM KD
Sbjct: 338 YCVVKEAIRHFRALKNFEGGTTILHNAGKFEDPLSLYLRALCREGRIVELIDALDAMRKD 397
Query: 180 NQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRG 239
+QP+PPRAMI+SRKYRTLVSSWIEPLQEEAELGYEIDY+ARYI EGGLTGERKRWVPRRG
Sbjct: 398 SQPIPPRAMIMSRKYRTLVSSWIEPLQEEAELGYEIDYVARYIEEGGLTGERKRWVPRRG 457
Query: 240 KTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVE 299
KTPLDPDA GFIYSNP+ETSFKQRCLED K +HRKLLRTLQ+EG VLGD SESDY+RV
Sbjct: 458 KTPLDPDASGFIYSNPIETSFKQRCLEDWKIHHRKLLRTLQSEGLPVLGDASESDYMRVM 517
Query: 300 ERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSR 359
ERL+ +IKGP Q++LKPKAASKMVVSELKEEL+AQGLP DGTRNVLYQRVQKARRIN+SR
Sbjct: 518 ERLRNIIKGPAQNLLKPKAASKMVVSELKEELEAQGLPIDGTRNVLYQRVQKARRINKSR 577
Query: 360 GRPLWVPPVEEEEEEVDEEVDELISRIKLEEGNTEFWKRRFLGEGLNGRHDKAVEMDESE 419
GRPLWVPP+EEEEEEVDEEVD+LI RIKL EG+TEFWKRRFLGEGL + +VE E+
Sbjct: 578 GRPLWVPPIEEEEEEVDEEVDDLICRIKLHEGDTEFWKRRFLGEGLI---ETSVESKETT 634
Query: 420 LSDVLDDDVTDVEYVAK--------------------DEEADEEEEVEQAEPESQDVDRV 459
S V + +E ++K + E +EE V + E ++ + V
Sbjct: 635 ESVVTGESEKAIEDISKEADNDEDDDEEEQEGDDDDDETEEEEEVVVAETENRAEGEELV 694
Query: 460 KEKLVEAKKPLQMIGVQLLKDSDQTTTTSKRSMKRSSRM-VEDDDDEDWFPEDPFEAFKE 518
K K +AKK LQMIGVQLLK+SD+ T KR KR+SRM +EDD DEDWFPEDPFEAFKE
Sbjct: 695 KNKAADAKKHLQMIGVQLLKESDEANRTKKRG-KRASRMTLEDDADEDWFPEDPFEAFKE 753
Query: 519 MRKRKVFDVSDMYTIADAWGWTWEREITNRPPQKWSQEWEVELAIQIMLK--VIELGGTP 576
MR+RKVFDVSDMYTIAD WGWTWE++ NR P+KWSQEWEVELAI +M K VIELGG P
Sbjct: 754 MRERKVFDVSDMYTIADVWGWTWEKDFKNRTPRKWSQEWEVELAIVLMTKARVIELGGIP 813
Query: 577 TIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGELDAAVAIV 636
TIGDCAVI+RAA+RAP+PSAFLKILQ THSLGY FGSPLYDEII+LCLD+GELDAA+AIV
Sbjct: 814 TIGDCAVILRAALRAPMPSAFLKILQTTHSLGYSFGSPLYDEIITLCLDIGELDAAIAIV 873
Query: 637 ADMETTGIAVPDQTLDRVITSRQTGET 663
ADMETTGI VPDQTLD+VI++RQ+ E
Sbjct: 874 ADMETTGITVPDQTLDKVISARQSNEN 900
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|6721160|gb|AAF26788.1|AC016829_12 hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1031 bits (2665), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 526/686 (76%), Positives = 588/686 (85%), Gaps = 27/686 (3%)
Query: 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 60
MI EDCKAGDHSNAL+I+YEMEAAGRMATTFHFN LLS QATCGIPEVA+ATFENMEYGE
Sbjct: 218 MIEEDCKAGDHSNALDISYEMEAAGRMATTFHFNCLLSVQATCGIPEVAYATFENMEYGE 277
Query: 61 D-YMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 119
+MKPDTETYN VIQAYTRAESYDRVQDVAELLGMMVEDHKR+QPNVKTYALLVECFTK
Sbjct: 278 GLFMKPDTETYNWVIQAYTRAESYDRVQDVAELLGMMVEDHKRVQPNVKTYALLVECFTK 337
Query: 120 YCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKD 179
YC V EAIRHFRAL+N+EGGT +LHN GNF DPLSLYLRALCREGRI+EL++AL+AM KD
Sbjct: 338 YCVVKEAIRHFRALKNFEGGTVILHNAGNFEDPLSLYLRALCREGRIVELIDALDAMRKD 397
Query: 180 NQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRG 239
NQP+PPRAMI+SRKYRTLVSSWIEPLQEEAELGYEIDY+ARYI EGGLTGERKRWVPRRG
Sbjct: 398 NQPIPPRAMIMSRKYRTLVSSWIEPLQEEAELGYEIDYLARYIEEGGLTGERKRWVPRRG 457
Query: 240 KTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVE 299
KTPLDPDA GFIYSNP+ETSFKQRCLED K +HRKLLRTLQ+EG VLGD SESDY+RV
Sbjct: 458 KTPLDPDASGFIYSNPIETSFKQRCLEDWKVHHRKLLRTLQSEGLPVLGDASESDYMRVV 517
Query: 300 ERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSR 359
ERL+ +IKGP ++LKPKAASKMVVSELKEEL+AQGLP DGTRNVLYQRVQKARRIN+SR
Sbjct: 518 ERLRNIIKGPALNLLKPKAASKMVVSELKEELEAQGLPIDGTRNVLYQRVQKARRINKSR 577
Query: 360 GRPLWVPPVEEEEEEVDEEVDELISRIKLEEGNTEFWKRRFLGEGLNGRHDKAVEMDESE 419
GRPLWVPP+EEEEEEVDEEVD+LI RIKL EG+TEFWKRRFLGEGL + +VE E+
Sbjct: 578 GRPLWVPPIEEEEEEVDEEVDDLICRIKLHEGDTEFWKRRFLGEGL---IETSVESKETT 634
Query: 420 LSDVLDDDVTDVEYVAK-------------------DEEADEEEEVEQAEPESQDVDRVK 460
S V + +E ++K DE +EE V + E ++ D VK
Sbjct: 635 ESVVTGESEKAIEDISKEADNEEDDDEEEQEGDEDDDENEEEEVVVPETENRAEGEDLVK 694
Query: 461 EKLVEAKKPLQMIGVQLLKDSDQTTTTSKRSMKRSSRM-VEDDDDEDWFPEDPFEAFKEM 519
K +AKK LQMIGVQLLK+SD+ T KR KR+SRM +EDD DEDWFPE+PFEAFKEM
Sbjct: 695 NKAADAKKHLQMIGVQLLKESDEANRTKKRG-KRASRMTLEDDADEDWFPEEPFEAFKEM 753
Query: 520 RKRKVFDVSDMYTIADAWGWTWEREITNRPPQKWSQEWEVELAIQIMLK--VIELGGTPT 577
R+RKVFDV+DMYTIAD WGWTWE++ N+ P+KWSQEWEVELAI +M K VIELGG PT
Sbjct: 754 RERKVFDVADMYTIADVWGWTWEKDFKNKTPRKWSQEWEVELAIVLMTKAGVIELGGIPT 813
Query: 578 IGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGELDAAVAIVA 637
IGDCAVI+RAA+RAP+PSAFLKILQ THSLGY FGSPLYDEII+LCLDLGELDAA+AIVA
Sbjct: 814 IGDCAVILRAALRAPMPSAFLKILQTTHSLGYSFGSPLYDEIITLCLDLGELDAAIAIVA 873
Query: 638 DMETTGIAVPDQTLDRVITSRQTGET 663
DMETTGI VPDQTLD+VI++RQ+ E+
Sbjct: 874 DMETTGITVPDQTLDKVISARQSNES 899
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356533668|ref|XP_003535382.1| PREDICTED: uncharacterized protein LOC100802355 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1030 bits (2663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 537/670 (80%), Positives = 598/670 (89%), Gaps = 13/670 (1%)
Query: 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 60
+I EDCK GDHSNAL+IAYEMEAAGRMATTFHFN LLS QATCGIPE+AFATFENMEYGE
Sbjct: 205 LIQEDCKVGDHSNALDIAYEMEAAGRMATTFHFNCLLSVQATCGIPEIAFATFENMEYGE 264
Query: 61 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY 120
DYMKPDTETYN VIQAYTRAESYDRVQDVAELLGMMVEDHKR+QPN KT+ALLVECFTKY
Sbjct: 265 DYMKPDTETYNWVIQAYTRAESYDRVQDVAELLGMMVEDHKRIQPNAKTHALLVECFTKY 324
Query: 121 CAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180
C V EAIRHFRAL+N+EGG +VLHNEGN GDPLSLYLRALCREGRI+E+LEALEAMAKDN
Sbjct: 325 CVVREAIRHFRALKNFEGGIEVLHNEGNHGDPLSLYLRALCREGRIVEMLEALEAMAKDN 384
Query: 181 QPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGK 240
QP+P RAMILSRKYRTLVSSWIEPLQEEAE+GYEIDYI+RYI EGGLTGERKRWVPRRGK
Sbjct: 385 QPIPSRAMILSRKYRTLVSSWIEPLQEEAEIGYEIDYISRYIDEGGLTGERKRWVPRRGK 444
Query: 241 TPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLG-DVSESDYVRVE 299
TPLDPDA GFIYSNPMETSFKQRC+E+ K +++KLL+TLQNEG A LG DVSE DY+RV+
Sbjct: 445 TPLDPDAHGFIYSNPMETSFKQRCMEELKLHNKKLLKTLQNEGLAALGDDVSEFDYIRVQ 504
Query: 300 ERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSR 359
ERLKKL+KGPEQ+VLKPKAASKM+VSELKEELDAQGLP DGTRNVLYQRVQKARRINRSR
Sbjct: 505 ERLKKLMKGPEQNVLKPKAASKMLVSELKEELDAQGLPIDGTRNVLYQRVQKARRINRSR 564
Query: 360 GRPLWVPPVEEEEEEVDEEVDELISRIKLEEGNTEFWKRRFLGEGLNGRHDKAVEMDESE 419
GRPLWVPPVEEEEEEVDEE+D LISRIKLEEGNTEFWKRRFLGEGLNG + + +S+
Sbjct: 565 GRPLWVPPVEEEEEEVDEELDALISRIKLEEGNTEFWKRRFLGEGLNGDQEMPTDAVQSD 624
Query: 420 LSDVLDDDVTDVEYVAK---------DEEADEEEEVEQAEPESQDVDRVKEKLVEAKKPL 470
+ +VL DDV +E AK +EE E+ E E E+QDV+R+KEK VEAK+PL
Sbjct: 625 VPEVL-DDVDAIEDAAKEVEDDEADDEEEEAEQAEEEVEPAENQDVNRIKEKEVEAKRPL 683
Query: 471 QMIGVQLLKDSDQTTTTSKRSMKRSSRM-VEDDDDEDWFPEDPFEAFKEMRKRKVFDVSD 529
QMIGVQLLKD DQ T TSK+ KRS R+ VEDDDD+DW P + FEAFKEMRKRK+FDVSD
Sbjct: 684 QMIGVQLLKDIDQPTATSKK-FKRSRRVQVEDDDDDDWLPLNLFEAFKEMRKRKIFDVSD 742
Query: 530 MYTIADAWGWTWEREITNRPPQKWSQEWEVELAIQIMLKVIELGGTPTIGDCAVIIRAAI 589
MYT+ADAWGWTWERE+ N+PP++WSQE EVELAI++M KVIELGG PTIGDCA+I+RAAI
Sbjct: 743 MYTLADAWGWTWERELKNKPPRRWSQEREVELAIKVMHKVIELGGRPTIGDCAMILRAAI 802
Query: 590 RAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGELDAAVAIVADMETTGIAVPDQ 649
RAPLPSAFL ILQ TH+LG+ FGSPLYDE ISLC+DLGELDAAVA+VAD+ETTGI+V D
Sbjct: 803 RAPLPSAFLTILQTTHALGFKFGSPLYDETISLCVDLGELDAAVAVVADLETTGISVSDH 862
Query: 650 TLDRVITSRQ 659
TLDRVI+++Q
Sbjct: 863 TLDRVISAKQ 872
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356574857|ref|XP_003555560.1| PREDICTED: uncharacterized protein LOC100807191 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1030 bits (2662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 542/669 (81%), Positives = 595/669 (88%), Gaps = 11/669 (1%)
Query: 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 60
+I EDCKAGDHSNAL+IAYEMEAAGRMATTFHFN LLS QATCGIPE+AFATFENMEYGE
Sbjct: 205 LIEEDCKAGDHSNALDIAYEMEAAGRMATTFHFNCLLSVQATCGIPEIAFATFENMEYGE 264
Query: 61 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY 120
DYMKPDTETYN VIQAYTRAESYDRVQDVAELLGMMVEDHKR+QPN KT+ALLVECFTKY
Sbjct: 265 DYMKPDTETYNWVIQAYTRAESYDRVQDVAELLGMMVEDHKRIQPNAKTHALLVECFTKY 324
Query: 121 CAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180
C V EAIRHFRAL+N+EGG KVLHNEGN GDPLSLYLRALCREGRI+E+LEALEAMAKDN
Sbjct: 325 CVVREAIRHFRALKNFEGGIKVLHNEGNHGDPLSLYLRALCREGRIVEMLEALEAMAKDN 384
Query: 181 QPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGK 240
QP+P RAMILSRKYRTLVSSWIEPLQEEAELGYEIDYI+RYI EGGLTGERKRWVPRRGK
Sbjct: 385 QPIPSRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYISRYIDEGGLTGERKRWVPRRGK 444
Query: 241 TPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGD-VSESDYVRVE 299
TPLDPDA GFIYSNPMETSFKQRCLE+ K +++KLL+TLQNEG A LGD VSESDY+RV+
Sbjct: 445 TPLDPDAHGFIYSNPMETSFKQRCLEELKLHNKKLLKTLQNEGLAALGDGVSESDYIRVQ 504
Query: 300 ERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSR 359
ERLKKLIKGPEQ+VLKPKAASKM+VSELKEELDAQGLP DG RNVLYQRVQKARRINRSR
Sbjct: 505 ERLKKLIKGPEQNVLKPKAASKMLVSELKEELDAQGLPIDGNRNVLYQRVQKARRINRSR 564
Query: 360 GRPLWVPPVEEEEEEVDEEVDELISRIKLEEGNTEFWKRRFLGEGLNGRHDKAVEMDESE 419
GRPLWVPPVEEEEEEVDEE+D LIS IKLEEGNTEFWKRRFLGEGLNG + + ESE
Sbjct: 565 GRPLWVPPVEEEEEEVDEELDALISHIKLEEGNTEFWKRRFLGEGLNGDQEMPTDAAESE 624
Query: 420 LSDVLDDDVTDVEYVAK---------DEEADEEEEVEQAEPESQDVDRVKEKLVEAKKPL 470
+ +VL DDV +E AK DEE E+ E E E+QDV+R+KEK VEAK+PL
Sbjct: 625 VPEVL-DDVDAIEDAAKEVEDDEADDDEEEAEQAEEEVEPAENQDVNRIKEKEVEAKRPL 683
Query: 471 QMIGVQLLKDSDQTTTTSKRSMKRSSRMVEDDDDEDWFPEDPFEAFKEMRKRKVFDVSDM 530
QMIGVQLLKD DQ T TSK+ + VEDDDD+DW P D FEAF+EMRKRK+FDVSDM
Sbjct: 684 QMIGVQLLKDIDQPTATSKKFKRSRKVQVEDDDDDDWLPLDLFEAFEEMRKRKIFDVSDM 743
Query: 531 YTIADAWGWTWEREITNRPPQKWSQEWEVELAIQIMLKVIELGGTPTIGDCAVIIRAAIR 590
YT+ADAWGWTWERE+ +PP++WSQEWEVELAI++M KVIELGG PTIGDCA+I+RAAIR
Sbjct: 744 YTLADAWGWTWERELKKKPPRRWSQEWEVELAIKVMQKVIELGGRPTIGDCAMILRAAIR 803
Query: 591 APLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGELDAAVAIVADMETTGIAVPDQT 650
APLPSAFL ILQ THSLG+ FGSPLYDEIISLC+DLGELDAAVA+VAD+ETTGI+V D T
Sbjct: 804 APLPSAFLTILQTTHSLGFKFGSPLYDEIISLCVDLGELDAAVAVVADLETTGISVSDLT 863
Query: 651 LDRVITSRQ 659
LDRVI+++Q
Sbjct: 864 LDRVISAKQ 872
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224144652|ref|XP_002325363.1| predicted protein [Populus trichocarpa] gi|222862238|gb|EEE99744.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1026 bits (2652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 536/680 (78%), Positives = 596/680 (87%), Gaps = 12/680 (1%)
Query: 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 60
MI EDCK GDHSNAL+IAY ME AGRMATTFHFN LLS QATCGIPE++FATFENMEYGE
Sbjct: 210 MIEEDCKVGDHSNALDIAYAMEEAGRMATTFHFNCLLSVQATCGIPEISFATFENMEYGE 269
Query: 61 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY 120
DYMKPDTE+YN VIQAYTRAESYDRVQDVAELLGMMVEDHKR+QPNVKTYALLVECF+KY
Sbjct: 270 DYMKPDTESYNWVIQAYTRAESYDRVQDVAELLGMMVEDHKRIQPNVKTYALLVECFSKY 329
Query: 121 CAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180
C V EAIRHFRAL+ +EGGTK LHNEG FGDPLSLYLRALCREGRI++LLEALEAMA+DN
Sbjct: 330 CVVREAIRHFRALRKFEGGTKALHNEGKFGDPLSLYLRALCREGRIVDLLEALEAMAEDN 389
Query: 181 QPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGK 240
QP+PPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDY+ARY++EGGLTGERKRWVPRRGK
Sbjct: 390 QPIPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYVARYVAEGGLTGERKRWVPRRGK 449
Query: 241 TPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEE 300
TPLDPD GFIYSNPMETS KQRCLED K +HRKLL+ L+NEG A LGD SESDY+RVEE
Sbjct: 450 TPLDPDCDGFIYSNPMETSLKQRCLEDWKAHHRKLLKMLRNEGLAALGDASESDYLRVEE 509
Query: 301 RLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRG 360
RL+K+I+GP+++VLKPKAASKM+VSELK+EL+AQGLP DGTRNVLYQRVQKARRINRSRG
Sbjct: 510 RLRKIIRGPDRNVLKPKAASKMIVSELKDELEAQGLPIDGTRNVLYQRVQKARRINRSRG 569
Query: 361 RPLWVPPVEEEEEEVDEEVDELISRIKLEEGNTEFWKRRFLGEGLNGRHDKAVEMDESEL 420
RPLWVPPVEEEEEEVDEEVDELISRI+L EG+TEFWKRRFLGEG NG H K V+M+ SEL
Sbjct: 570 RPLWVPPVEEEEEEVDEEVDELISRIQLHEGDTEFWKRRFLGEGFNGNHVKPVDMETSEL 629
Query: 421 SDVLDDDVTDV---------EYVAKDEEADEEEEVEQAEPESQDVDR-VKEKLVEAKKPL 470
D LD+D D E ++ + + E EVE + ESQD +R VK K EAKKPL
Sbjct: 630 PDELDEDEDDDDDDVEDVAKEVEDEEADEEGEVEVEVEQTESQDAERIVKAKEAEAKKPL 689
Query: 471 QMIGVQLLKDSDQTTTTSKRSMKRSSRMVEDDDDEDWFPEDPFEAFKEMRKRKVFDVSDM 530
QMIGVQLLKDSDQTT SK+S + + + DDDD+DWFPED EAFKEMR RKVFDV DM
Sbjct: 690 QMIGVQLLKDSDQTTRMSKKSRR-RAARLADDDDDDWFPEDILEAFKEMRNRKVFDVEDM 748
Query: 531 YTIADAWGWTWEREITNRPPQKWSQEWEVELAIQIMLKVIELGGTPTIGDCAVIIRAAIR 590
Y IADAWGWTWEREI RP Q+WSQEWEVELAIQ+MLK +LGGTPTIGDCA+I+RAAIR
Sbjct: 749 YLIADAWGWTWEREIKKRPLQRWSQEWEVELAIQLMLKA-KLGGTPTIGDCAMILRAAIR 807
Query: 591 APLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGELDAAVAIVADMETTGIAVPDQT 650
AP+PSAFLKILQ THSLGY FGS LYDEIISLC+DLGELDAA+AIVAD+ET GIAVPDQT
Sbjct: 808 APMPSAFLKILQTTHSLGYQFGSSLYDEIISLCVDLGELDAAIAIVADLETAGIAVPDQT 867
Query: 651 LDRVITSRQTGETSVDDASS 670
LDRVI+++Q E++ ++ S
Sbjct: 868 LDRVISAKQAPESAAEETLS 887
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357441259|ref|XP_003590907.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355479955|gb|AES61158.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1016 bits (2626), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 526/725 (72%), Positives = 589/725 (81%), Gaps = 59/725 (8%)
Query: 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 60
+I EDCKAGDHSNALEI+YEMEAAGRMATTFHFN LLS QATCGIPE+AF TFENMEYGE
Sbjct: 200 LIEEDCKAGDHSNALEISYEMEAAGRMATTFHFNCLLSVQATCGIPEIAFTTFENMEYGE 259
Query: 61 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY 120
DYMKPDTETYN VIQAYTRA+SYDRVQDVAELLGMMVEDHKR+QPNVKT+ALLVECFTKY
Sbjct: 260 DYMKPDTETYNWVIQAYTRADSYDRVQDVAELLGMMVEDHKRVQPNVKTHALLVECFTKY 319
Query: 121 CAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180
C V EAIRHFRAL+N+EGGTK+LH +GN GDPLSLYLRALCREGRII++LEALEAMA DN
Sbjct: 320 CVVREAIRHFRALKNFEGGTKILHMDGNHGDPLSLYLRALCREGRIIDMLEALEAMANDN 379
Query: 181 QPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGK 240
Q +PPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARY+ EGGLTGERKRWVPR GK
Sbjct: 380 QQIPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYVEEGGLTGERKRWVPRSGK 439
Query: 241 TPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGD-VSESDYVRVE 299
TPLDPDA GFIYSNPMETSFKQRCLE+ K YH+KLL+ L+ EG LGD SESDYVRV
Sbjct: 440 TPLDPDADGFIYSNPMETSFKQRCLEEKKVYHKKLLKKLRYEGIVALGDGASESDYVRVI 499
Query: 300 ERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSR 359
E LKK+IKGPEQ+ LKPKAASKM+V+ELKEEL+AQGLP DGTRNVLYQRVQKARRIN+SR
Sbjct: 500 EWLKKIIKGPEQNALKPKAASKMLVNELKEELEAQGLPIDGTRNVLYQRVQKARRINQSR 559
Query: 360 GRPLWVPPVEEEEEEVDEEVDELISRIKLEEGNTEFWKRRFLGEGLNGRHDKAVEMDESE 419
GRPLWVPP+E EEEEVDEE++ LISRIKLEEGNTE+WKRRFLGEGLNG + A++ ESE
Sbjct: 560 GRPLWVPPIEVEEEEVDEELEALISRIKLEEGNTEYWKRRFLGEGLNGDNGNAMDEGESE 619
Query: 420 LSDVLDDDVTDV-----------EYVAKDEEADEEEEVEQAEPESQDVDRVKEKLVEAKK 468
DV D DV E +EE E+ E E A+ E+QDV+R+KEK VE+KK
Sbjct: 620 SPDV--QDYIDVVGDDAKEAEDDEADEDEEEEVEQIEEEIAQVENQDVERIKEKEVESKK 677
Query: 469 PLQMIGVQLLKDSDQTTTTSKRSMKRSS--RMVEDDDDEDWFPEDPFEAFKEMRKRKVFD 526
PLQMIGVQLLKD ++ + T K+S +R S MV+DD D+DWFP D FEAFKEMR R+VFD
Sbjct: 678 PLQMIGVQLLKDFNEPSATFKKSSRRRSRRNMVDDDADDDWFPLDIFEAFKEMRNRRVFD 737
Query: 527 VSDMYTIADAWGWTWEREITNRPPQKWSQEWEVELAIQIMLK------------------ 568
VSDMYT+ADAWGWTWE+E+ NRPP +WSQEWEV+LAI++M K
Sbjct: 738 VSDMYTLADAWGWTWEKELKNRPPHRWSQEWEVDLAIKVMQKATVANTPLDKLNKKEIVR 797
Query: 569 -------------------------VIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQK 603
VI+LGGTPTIGDCAVI+RAAI APLPSAFL ILQ
Sbjct: 798 AVILSMCKELKVGYVVRIKYGDNAAVIQLGGTPTIGDCAVILRAAISAPLPSAFLTILQT 857
Query: 604 THSLGYVFGSPLYDEIISLCLDLGELDAAVAIVADMETTGIAVPDQTLDRVITSRQTGET 663
TH LGY FG PLYDE+ISLCLDLGELDAAVA+VAD+ETTGI V DQTLDRVI+++Q +
Sbjct: 858 THGLGYKFGRPLYDEVISLCLDLGELDAAVAVVADLETTGILVSDQTLDRVISAKQGIDN 917
Query: 664 SVDDA 668
+D
Sbjct: 918 PSNDG 922
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357140590|ref|XP_003571848.1| PREDICTED: uncharacterized protein LOC100838913 [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 925 bits (2390), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/671 (70%), Positives = 558/671 (83%), Gaps = 16/671 (2%)
Query: 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYG- 59
+I EDCKAGDHSNAL +AY+MEAAGRMATTFHFN LLS QATCGIPE+AF+T+ENMEYG
Sbjct: 216 LIEEDCKAGDHSNALTVAYQMEAAGRMATTFHFNCLLSVQATCGIPEIAFSTYENMEYGG 275
Query: 60 EDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 119
EDYMKPDTE+YN VIQA+TRA ++DR DVAELLGMMVED+KR+QPN +TYALLVECFTK
Sbjct: 276 EDYMKPDTESYNWVIQAFTRASAHDRAPDVAELLGMMVEDYKRIQPNARTYALLVECFTK 335
Query: 120 YCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKD 179
YC V EAIRHFRAL+ GGT VL+NEGN GDPLSLYLR+LC +GR ELL+ALEAMA D
Sbjct: 336 YCMVNEAIRHFRALRRIPGGTTVLYNEGNCGDPLSLYLRSLCLDGRADELLDALEAMADD 395
Query: 180 NQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRG 239
NQ + PRAMIL+RKYRTLVSSWIEPLQEEA++G+EIDY+ARYI EGGLTGERKRWVPRRG
Sbjct: 396 NQTIAPRAMILNRKYRTLVSSWIEPLQEEADVGFEIDYVARYIEEGGLTGERKRWVPRRG 455
Query: 240 KTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVE 299
KTPLDPD GF YSNP+ETSFK RC E+ K YHR+LL TL+NEGP +LGDVSE D RV
Sbjct: 456 KTPLDPDEFGFAYSNPIETSFKLRCFEELKLYHRRLLITLRNEGPGILGDVSEDDVRRVV 515
Query: 300 ERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSR 359
ERLKKL+ GP+++V+KPKAASKMVVSELK EL+AQGLPTDG R VLYQRVQKARRINRSR
Sbjct: 516 ERLKKLVVGPKKNVVKPKAASKMVVSELKIELEAQGLPTDGNRQVLYQRVQKARRINRSR 575
Query: 360 GRPLWVPPVEEEEEEVDEEVDELISRIKLEEGNTEFWKRRFLGEGLNGR-HDKAVEMDES 418
G PLWVPPVE++EE EE+DE+ISRIKLE+GNTEFWKRRFLGE N + + E D
Sbjct: 576 GIPLWVPPVEDDEEVD-EELDEMISRIKLEDGNTEFWKRRFLGETRNHLCEEDSKEEDPD 634
Query: 419 ELSDVLDDDVTDVEYVAKDEEADE---EEEVEQAEPESQDVDRVKEKLVEAKKP---LQM 472
++ DDD D + AK+ + DE EE E+ + ++ D D K+K AK P LQM
Sbjct: 635 LDDELDDDDDDDDDDSAKEADEDEIYDEEVAERTQNQAGD-DETKDK--PAKGPNQHLQM 691
Query: 473 IGVQLLKDSDQTTTTSKRSMKRSSRMVEDDDDEDWFPEDPFEAFKEMRKRKVFDVSDMYT 532
IGVQLLKD ++T+ ++K+ K + E DDDEDWFPEDP EAFK MR+ ++FDVSDMYT
Sbjct: 692 IGVQLLKDLEKTSVSTKKLKK----IPEIDDDEDWFPEDPIEAFKVMRETRMFDVSDMYT 747
Query: 533 IADAWGWTWEREITNRPPQKWSQEWEVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAP 592
ADAWGWTWEREI + P+KWSQEWEVELAI+IM KVI+LGGTPTIGDCA+I+RAA++AP
Sbjct: 748 TADAWGWTWEREIKKKMPRKWSQEWEVELAIKIMNKVIQLGGTPTIGDCAIILRAAMKAP 807
Query: 593 LPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGELDAAVAIVADMETTGIAVPDQTLD 652
+PS F+ ILQ TH+LG+ FGSPLYDE+I LCLDL E+DAA+A+VA+MET GI V D+TLD
Sbjct: 808 VPSTFMTILQTTHNLGHKFGSPLYDEVILLCLDLEEIDAAIAVVAEMETNGIKVLDETLD 867
Query: 653 RVITSRQTGET 663
RV++++Q+G +
Sbjct: 868 RVLSAKQSGNS 878
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 670 | ||||||
| TAIR|locus:2015213 | 629 | AT1G63150 [Arabidopsis thalian | 0.240 | 0.255 | 0.290 | 8.3e-07 | |
| TAIR|locus:1005716169 | 831 | AT5G21222 [Arabidopsis thalian | 0.177 | 0.143 | 0.285 | 4.3e-06 | |
| TAIR|locus:1009023134 | 644 | AT1G12775 [Arabidopsis thalian | 0.232 | 0.242 | 0.257 | 6.2e-05 | |
| TAIR|locus:2203916 | 634 | AT1G62590 [Arabidopsis thalian | 0.170 | 0.179 | 0.314 | 9e-05 | |
| TAIR|locus:504956171 | 650 | ABO5 "ABA Overly-Sensitive 5" | 0.179 | 0.184 | 0.267 | 0.00012 | |
| TAIR|locus:2084978 | 602 | AT3G04760 [Arabidopsis thalian | 0.232 | 0.259 | 0.257 | 0.00016 | |
| TAIR|locus:2151281 | 819 | AT5G02860 [Arabidopsis thalian | 0.183 | 0.150 | 0.305 | 0.0003 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.170 | 0.181 | 0.289 | 0.00032 | |
| TAIR|locus:1006230454 | 506 | AT5G18475 "AT5G18475" [Arabido | 0.241 | 0.320 | 0.248 | 0.00036 | |
| TAIR|locus:2166610 | 596 | AT5G38730 "AT5G38730" [Arabido | 0.294 | 0.330 | 0.242 | 0.00047 |
| TAIR|locus:2015213 AT1G63150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 142 (55.0 bits), Expect = 8.3e-07, Sum P(2) = 8.3e-07
Identities = 52/179 (29%), Positives = 78/179 (43%)
Query: 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 65
CK GD AL + +MEAA A FN ++ EVA F ME ++P
Sbjct: 234 CKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEME--TKGIRP 291
Query: 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTE 125
+ TYN +I +Y R D + LL M+E K++ PNV T+ L++ F K + E
Sbjct: 292 NVVTYNSLINCLC---NYGRWSDASRLLSNMLE--KKINPNVVTFNALIDAFFKEGKLVE 346
Query: 126 AIR-HFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM-AKDNQP 182
A + H +Q + +N L + C R+ E + + M +KD P
Sbjct: 347 AEKLHEEMIQRSIDPDTITYN---------LLINGFCMHNRLDEAKQMFKFMVSKDCLP 396
|
|
| TAIR|locus:1005716169 AT5G21222 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 123 (48.4 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 36/126 (28%), Positives = 63/126 (50%)
Query: 11 HSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETY 70
HS L + ++E G T FN +++ + G + A FE M+ E KP T+
Sbjct: 371 HS-LLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMK--ESGCKPTASTF 427
Query: 71 NCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHF 130
N +I+ Y + ++++ + LL MM+ D + LQPN +T +LV+ + + EA
Sbjct: 428 NTLIKGYGKI---GKLEESSRLLDMMLRD-EMLQPNDRTCNILVQAWCNQRKIEEAWNIV 483
Query: 131 RALQNY 136
+Q+Y
Sbjct: 484 YKMQSY 489
|
|
| TAIR|locus:1009023134 AT1G12775 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 123 (48.4 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 44/171 (25%), Positives = 81/171 (47%)
Query: 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 65
CK+G + A+E+ +ME ++ ++ G + AF F ME K
Sbjct: 239 CKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKG--FKA 296
Query: 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTE 125
D TYN +I + A +D D A+LL M++ +++ PNV T+++L++ F K + E
Sbjct: 297 DIITYNTLIGGFCNAGRWD---DGAKLLRDMIK--RKISPNVVTFSVLIDSFVKEGKLRE 351
Query: 126 AIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM 176
A + + + G + N + SL + C+E R+ E ++ ++ M
Sbjct: 352 ADQLLKEMMQ-RG---IAPNTITYN---SL-IDGFCKENRLEEAIQMVDLM 394
|
|
| TAIR|locus:2203916 AT1G62590 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 127 (49.8 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 38/121 (31%), Positives = 58/121 (47%)
Query: 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 65
CK GD AL + +MEAA A FN ++ + A F+ ME ++P
Sbjct: 236 CKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEME--TKGIRP 293
Query: 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTE 125
+ TY+ +I SY R D ++LL M+E K++ PN+ T+ L++ F K E
Sbjct: 294 NVVTYSSLISCLC---SYGRWSDASQLLSDMIE--KKINPNLVTFNALIDAFVKEGKFVE 348
Query: 126 A 126
A
Sbjct: 349 A 349
|
|
| TAIR|locus:504956171 ABO5 "ABA Overly-Sensitive 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 128 (50.1 bits), Expect = 0.00012, P = 0.00012
Identities = 34/127 (26%), Positives = 61/127 (48%)
Query: 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 60
+IA + G+ A+ I E+E + +N L++C G + A F+ M+ E
Sbjct: 483 LIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQ--E 540
Query: 61 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY 120
+ PD TY+ +++ + + E + + E M+V K QPN+ TY +L++C K
Sbjct: 541 KGLNPDVVTYSTLMECFGKTERVEMAYSLFE--EMLV---KGCQPNIVTYNILLDCLEKN 595
Query: 121 CAVTEAI 127
EA+
Sbjct: 596 GRTAEAV 602
|
|
| TAIR|locus:2084978 AT3G04760 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 127 (49.8 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 44/171 (25%), Positives = 80/171 (46%)
Query: 9 GDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTE 68
G AL++ EM + G F +N ++ G+ + AF N+E +PD
Sbjct: 242 GGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKG--CEPDVI 299
Query: 69 TYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIR 128
+YN +++A ++ + +L+ M + + PNV TY++L+ + + EA+
Sbjct: 300 SYNILLRALLNQGKWEEGE---KLMTKMFSE--KCDPNVVTYSILITTLCRDGKIEEAMN 354
Query: 129 HFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKD 179
+ ++ +G T ++ DPL + A CREGR+ +E LE M D
Sbjct: 355 LLKLMKE-KGLTPDAYSY----DPL---IAAFCREGRLDVAIEFLETMISD 397
|
|
| TAIR|locus:2151281 AT5G02860 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 120 (47.3 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 40/131 (30%), Positives = 54/131 (41%)
Query: 6 CKAGD-HSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK 64
CK G H A ++ EM+AAG +N LL P+ A M
Sbjct: 289 CKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNG--FS 346
Query: 65 PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVT 124
P TYN +I AY R D + EL M E K +P+V TY L+ F + V
Sbjct: 347 PSIVTYNSLISAYARDGMLD---EAMELKNQMAE--KGTKPDVFTYTTLLSGFERAGKVE 401
Query: 125 EAIRHFRALQN 135
A+ F ++N
Sbjct: 402 SAMSIFEEMRN 412
|
|
| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 116 (45.9 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 35/121 (28%), Positives = 56/121 (46%)
Query: 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 65
CK GD AL + +ME A + ++ A C V A E ++P
Sbjct: 231 CKRGDIDLALSLLKKMEKGKIEADVVIYTTIID--ALCNYKNVNDALNLFTEMDNKGIRP 288
Query: 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTE 125
+ TYN +I+ +Y R D + LL M+E +++ PNV T++ L++ F K + E
Sbjct: 289 NVVTYNSLIRCLC---NYGRWSDASRLLSDMIE--RKINPNVVTFSALIDAFVKEGKLVE 343
Query: 126 A 126
A
Sbjct: 344 A 344
|
|
| TAIR|locus:1006230454 AT5G18475 "AT5G18475" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 118 (46.6 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 44/177 (24%), Positives = 79/177 (44%)
Query: 1 MIAEDCKAGDHSNALEIAYEMEAAG-RMATTFHFNHLLSCQATCGIPEVAFATFENMEYG 59
++ CK GD + A + EM+ +G + ++ L+ C + A FE+M
Sbjct: 202 LVKHHCKNGDINFAFLVVEEMKRSGISYPNSITYSTLMDCLFAHSRSKEAVELFEDM-IS 260
Query: 60 EDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 119
++ + PD T+N +I + RA +R + ++L M ++ PNV Y+ L+ F K
Sbjct: 261 KEGISPDPVTFNVMINGFCRAGEVERAK---KILDFMKKNG--CNPNVYNYSALMNGFCK 315
Query: 120 YCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM 176
+ EA + F ++ + G K L G + + CR G E ++ L M
Sbjct: 316 VGKIQEAKQTFDEVK--KTGLK-LDTVG-----YTTLMNCFCRNGETDEAMKLLGEM 364
|
|
| TAIR|locus:2166610 AT5G38730 "AT5G38730" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 112 (44.5 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 54/223 (24%), Positives = 99/223 (44%)
Query: 1 MIAEDC-KAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYG 59
++ C K+GD A ++ EME G F +N L+S + A + + ME
Sbjct: 208 VLVHACSKSGDPEKAEKLLSEMEEKGVFPDIFTYNTLISVYCKKSMHFEALSVQDRME-- 265
Query: 60 EDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 119
+ P+ TYN I ++R R+++ L + +D + N TY L++ + +
Sbjct: 266 RSGVAPNIVTYNSFIHGFSRE---GRMREATRLFREIKDD---VTANHVTYTTLIDGYCR 319
Query: 120 YCAVTEAIRHFRALQN--YEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMA 177
+ EA+R +++ + G V +N LR LC +GRI E L M+
Sbjct: 320 MNDIDEALRLREVMESRGFSPGV-VTYNS---------ILRKLCEDGRIREANRLLTEMS 369
Query: 178 -KDNQP--VPPRAMILSR-KYRTLVSSWIEPLQEEAELGYEID 216
K +P + +I + K +VS+ ++ ++ E G ++D
Sbjct: 370 GKKIEPDNITCNTLINAYCKIEDMVSA-VKVKKKMIESGLKLD 411
|
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | fgenesh2_kg.3__387__AT3G04260.1 | annotation not avaliable (914 aa) | |||||||||
(Arabidopsis lyrata) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | fgenesh2_kg.4__1488__AT2G34640.1 | annotation not avaliable (527 aa) | • | • | 0.659 | ||||||
 | scaffold_501800.1 | annotation not avaliable (675 aa) | • | • | 0.602 | ||||||
 | scaffold_301041.1 | annotation not avaliable (337 aa) | • | • | 0.561 | ||||||
 | fgenesh2_kg.1__2350__AT1G21600.2 | annotation not avaliable (328 aa) | • | • | 0.511 | ||||||
 | s2 | Plastid ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase-relat [...] (483 aa) | • | • | 0.507 | ||||||
 | fgenesh2_kg.8__1315__AT5G54180.1 | annotation not avaliable (500 aa) | • | • | 0.451 | ||||||
 | fgenesh2_kg.8__1423__AT5G55220.1 | annotation not avaliable (551 aa) | • | 0.436 | |||||||
 | fgenesh1_pg.C_scaffold_6000683 | annotation not avaliable (287 aa) | • | • | 0.426 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 670 | |||
| smart00513 | 35 | smart00513, SAP, Putative DNA-binding (bihelical) | 1e-06 | |
| pfam02037 | 35 | pfam02037, SAP, SAP domain | 3e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-06 |
| >gnl|CDD|128789 smart00513, SAP, Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 1e-06
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 320 SKMVVSELKEELDAQGLPTDGTRNVLYQRVQKA 352
+K+ VSELK+EL +GL T GT+ L R+ +A
Sbjct: 2 AKLKVSELKDELKKRGLSTSGTKAELVDRLLEA 34
|
Length = 35 |
| >gnl|CDD|202100 pfam02037, SAP, SAP domain | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 3e-06
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 320 SKMVVSELKEELDAQGLPTDGTRNVLYQRVQKA 352
SK+ V+ELKEEL +GLPT G + L +R+++
Sbjct: 2 SKLTVAELKEELKKRGLPTSGKKAELIERLKEY 34
|
The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding domain found in diverse nuclear and cytoplasmic proteins. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 4e-06
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 65 PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 119
PD TYN +I Y + +V++ +L M + + ++PNV TY++L++ K
Sbjct: 1 PDVVTYNTLIDGYCKK---GKVEEALKLFNEMKK--RGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 670 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.7 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.66 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.53 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.51 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.49 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.29 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.29 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.28 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.05 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 98.95 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 98.74 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 98.72 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.69 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 98.64 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.62 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 98.62 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 98.58 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 98.51 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 98.5 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.38 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.3 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 98.25 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 98.23 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 98.21 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 98.2 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 98.11 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 98.06 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 98.05 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 97.96 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 97.95 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 97.94 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 97.9 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 97.88 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 97.85 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.83 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 97.79 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 97.76 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.7 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 97.69 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 97.69 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.67 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.61 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 97.6 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 97.59 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 97.53 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 97.47 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 97.47 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 97.45 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.43 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.4 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.38 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 97.3 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.29 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 97.26 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 97.24 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 97.19 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 97.16 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 97.1 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 97.07 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 97.02 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 97.02 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 97.01 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 97.01 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.92 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 96.91 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.89 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 96.84 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 96.72 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 96.66 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.61 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 96.53 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 96.51 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 96.45 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 96.39 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 96.37 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 96.3 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 96.28 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.18 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 96.04 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 96.04 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 96.01 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 96.0 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 95.99 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 95.98 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 95.77 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 95.59 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 95.58 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 95.57 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 95.54 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 95.47 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 95.42 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 95.36 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 95.35 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 95.3 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 95.28 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 95.05 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 95.04 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 94.96 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 94.94 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 94.92 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 94.84 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.84 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 94.84 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 94.77 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 94.74 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 94.67 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 94.64 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 94.61 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 94.45 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 94.44 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 94.44 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 94.41 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 94.34 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 94.06 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 94.01 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 93.93 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 93.8 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 93.67 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 93.59 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 93.11 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.05 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 92.95 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 92.83 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 92.81 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 92.49 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 92.45 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 92.37 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 92.33 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 92.32 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 92.11 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 91.82 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 91.77 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 91.56 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 91.32 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 91.27 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 91.22 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 91.19 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 90.89 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 90.67 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.48 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 90.31 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 90.01 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 89.98 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 89.81 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 89.69 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 89.5 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 89.42 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 89.37 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 89.36 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 89.32 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 89.17 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 89.12 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 89.09 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 89.04 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 88.92 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 88.41 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 88.2 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 87.54 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 87.42 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 87.29 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 86.63 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 86.17 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 86.1 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 85.91 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 85.7 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 85.42 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 85.35 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 85.23 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 85.14 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 84.81 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 84.72 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 83.67 | |
| PLN02789 | 320 | farnesyltranstransferase | 83.42 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 82.84 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 82.25 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 81.31 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 80.62 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 80.52 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 80.07 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-50 Score=482.53 Aligned_cols=476 Identities=15% Similarity=0.163 Sum_probs=275.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcC
Q 005912 2 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 81 (670)
Q Consensus 2 I~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g 81 (670)
+.+|++.|.++.|+.+|+.|.. ||..|||+||.+|++.|+++.|.++|++|. ..|+.||.++||+||.+|++.|
T Consensus 413 i~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~--~~Gl~pD~~tynsLI~~y~k~G 486 (1060)
T PLN03218 413 FKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQ--EAGLKADCKLYTTLISTCAKSG 486 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHH--HcCCCCCHHHHHHHHHHHHhCc
Confidence 3445555555555555555542 555555555555555555555555555555 4555555555555555555555
Q ss_pred CcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHH
Q 005912 82 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALC 161 (670)
Q Consensus 82 ~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~ 161 (670)
++++|+++|++|.+ .|+.||.+||++||.+|++.|++++|.++|+.|.+.++.|+.. +||+||.+|+
T Consensus 487 ---~vd~A~~vf~eM~~--~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~v--------TYnsLI~a~~ 553 (1060)
T PLN03218 487 ---KVDAMFEVFHEMVN--AGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRV--------VFNALISACG 553 (1060)
T ss_pred ---CHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHH--------HHHHHHHHHH
Confidence 45555555555555 4555555555555555555555555555555555555555544 5555555555
Q ss_pred HcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHH---------HHHHHHHHcCCCHHH-----HHHHHHcCCc
Q 005912 162 REGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWI---------EPLQEEAELGYEIDY-----IARYISEGGL 227 (670)
Q Consensus 162 k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~---------~ll~~m~~~G~~pd~-----i~~~~~~~g~ 227 (670)
+.|++++|.++|++|...+..+.|+.+ +|+.++..|+ ++++.|.+.|+.|+. +...|++.|.
T Consensus 554 k~G~~deA~~lf~eM~~~~~gi~PD~v----TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~ 629 (1060)
T PLN03218 554 QSGAVDRAFDVLAEMKAETHPIDPDHI----TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGD 629 (1060)
T ss_pred HCCCHHHHHHHHHHHHHhcCCCCCcHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC
Confidence 555555555555555442222244443 2444444333 244444444444332 2234455666
Q ss_pred HHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccC
Q 005912 228 TGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIK 307 (670)
Q Consensus 228 ~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~ 307 (670)
.++|..+|+.|...|+.||. ++|++|| ++|++.|++++|.++|++|...|+. |+..+|+.++..|.+
T Consensus 630 ~deAl~lf~eM~~~Gv~PD~--~TynsLI----~a~~k~G~~eeA~~l~~eM~k~G~~----pd~~tynsLI~ay~k--- 696 (1060)
T PLN03218 630 WDFALSIYDDMKKKGVKPDE--VFFSALV----DVAGHAGDLDKAFEILQDARKQGIK----LGTVSYSSLMGACSN--- 696 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCH--HHHHHHH----HHHHhCCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHh---
Confidence 66666666666666666665 6666555 5666666666666666666666666 566666666666654
Q ss_pred CCcccccccccCCHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhCChhhhhcCCCCCCCcchhhhhhhHHHHHHHHhc
Q 005912 308 GPEQHVLKPKAASKMVVSELKEELDAQGL-PTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDELISRI 386 (670)
Q Consensus 308 ~p~~~~L~~~~g~~~~A~~l~~~M~~~Gi-p~d~t~~~Ll~a~~~aG~~~eA~~~~~~~p~~e~~~~~vdeE~~~li~~~ 386 (670)
.|.+++|.++|++|...|+ |+..|||+||.+|++.|++++|..+ ..-+...
T Consensus 697 ----------~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlel------------------f~eM~~~ 748 (1060)
T PLN03218 697 ----------AKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEV------------------LSEMKRL 748 (1060)
T ss_pred ----------CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHH------------------HHHHHHc
Confidence 3336666666666666666 4446666666666666666666532 1112222
Q ss_pred ccCCCcHhHHHHhhhccCcCCCCCccccccccccccccCcCcchhhHhhhchhhhHHHHHhhcCCCcchhhhHHHHHHhh
Q 005912 387 KLEEGNTEFWKRRFLGEGLNGRHDKAVEMDESELSDVLDDDVTDVEYVAKDEEADEEEEVEQAEPESQDVDRVKEKLVEA 466 (670)
Q Consensus 387 ~~~~~~~~~w~~~llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (670)
... ++...|.. ++.+|...+.
T Consensus 749 Gi~-Pd~~Ty~s-LL~a~~k~G~--------------------------------------------------------- 769 (1060)
T PLN03218 749 GLC-PNTITYSI-LLVASERKDD--------------------------------------------------------- 769 (1060)
T ss_pred CCC-CCHHHHHH-HHHHHHHCCC---------------------------------------------------------
Confidence 222 24444442 3322211111
Q ss_pred cCchhhHHhhhcccccccchhhhcccccccCcccCCCCCCCCCCChHHHHHHhhhccC-CcchhhHHHHHHhcchhhhh-
Q 005912 467 KKPLQMIGVQLLKDSDQTTTTSKRSMKRSSRMVEDDDDEDWFPEDPFEAFKEMRKRKV-FDVSDMYTIADAWGWTWERE- 544 (670)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~- 544 (670)
.....++|.+|.+.|+ +|+..+..+.+.|.-.+++-
T Consensus 770 ------------------------------------------le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~ 807 (1060)
T PLN03218 770 ------------------------------------------ADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKAC 807 (1060)
T ss_pred ------------------------------------------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 1223445555666665 55555555444432111110
Q ss_pred -----------hccCCCCCchhHHHHHHHHHHHHHHHHcCCccChhcHHHHHHHHHcCCCcHHHHHHHHHhhhcCCccCc
Q 005912 545 -----------ITNRPPQKWSQEWEVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGS 613 (670)
Q Consensus 545 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (670)
...+.-..|. +.|+.++++|++.|..|+..+|+.+|.+.++....+-|.+++..+...|-.|..
T Consensus 808 ~l~~~v~~f~~g~~~~~n~w~-----~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~ 882 (1060)
T PLN03218 808 ALGEPVVSFDSGRPQIENKWT-----SWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQ 882 (1060)
T ss_pred hhhhhhhhhhccccccccchH-----HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcch
Confidence 0011112333 349999999999999999999999997666877788888999999889999999
Q ss_pred ccHHHHHHHHhhhchhHHHHHHHHHHHHhCCCCCch
Q 005912 614 PLYDEIISLCLDLGELDAAVAIVADMETTGIAVPDQ 649 (670)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (670)
.+|..+|++|.+. ..+|..++..|...||.|.-+
T Consensus 883 ~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 883 SNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 9999999998443 258999999999999999876
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-49 Score=474.22 Aligned_cols=454 Identities=15% Similarity=0.204 Sum_probs=389.1
Q ss_pred CHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHH
Q 005912 1 MIAEDCKAGDHSNALEIAYEMEAAGR-MATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 79 (670)
Q Consensus 1 LI~~y~k~G~~~~Al~lf~~M~~~Gv-~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k 79 (670)
+++.|++.|++++|+++|++|...|+ .|+..+++.++.+|++.|.++.|..+|+.|. .||..|||+||++|++
T Consensus 376 ~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~------~pd~~Tyn~LL~a~~k 449 (1060)
T PLN03218 376 AYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR------NPTLSTFNMLMSVCAS 449 (1060)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC------CCCHHHHHHHHHHHHh
Confidence 36788999999999999999999996 5788999999999999999999999999999 5999999999999999
Q ss_pred cCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHH
Q 005912 80 AESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRA 159 (670)
Q Consensus 80 ~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~a 159 (670)
.| +.+.|+++|.+|.+ .|+.||..||++||.+|++.|+++.|.++|++|.+.|+.|++. |||+||++
T Consensus 450 ~g---~~e~A~~lf~~M~~--~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pdvv--------TynaLI~g 516 (1060)
T PLN03218 450 SQ---DIDGALRVLRLVQE--AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVH--------TFGALIDG 516 (1060)
T ss_pred Cc---CHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHH--------HHHHHHHH
Confidence 99 89999999999999 9999999999999999999999999999999999988888877 99999999
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhc
Q 005912 160 LCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRG 239 (670)
Q Consensus 160 y~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~ 239 (670)
|++.|++++|.++|++|.+.|+ .|+.. +|+.++.++ ++.|.+++|..+|+.|.
T Consensus 517 y~k~G~~eeAl~lf~~M~~~Gv--~PD~v----TYnsLI~a~---------------------~k~G~~deA~~lf~eM~ 569 (1060)
T PLN03218 517 CARAGQVAKAFGAYGIMRSKNV--KPDRV----VFNALISAC---------------------GQSGAVDRAFDVLAEMK 569 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHHcCC--CCCHH----HHHHHHHHH---------------------HHCCCHHHHHHHHHHHH
Confidence 9999999999999999999997 68876 499999888 77788999999999986
Q ss_pred c--CCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccc
Q 005912 240 K--TPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPK 317 (670)
Q Consensus 240 ~--~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~ 317 (670)
. .|+.||. ++|++|| .+|++.|++++|.++|+.|...|+. |+..+|+.++..|.+
T Consensus 570 ~~~~gi~PD~--vTynaLI----~ay~k~G~ldeA~elf~~M~e~gi~----p~~~tynsLI~ay~k------------- 626 (1060)
T PLN03218 570 AETHPIDPDH--ITVGALM----KACANAGQVDRAKEVYQMIHEYNIK----GTPEVYTIAVNSCSQ------------- 626 (1060)
T ss_pred HhcCCCCCcH--HHHHHHH----HHHHHCCCHHHHHHHHHHHHHcCCC----CChHHHHHHHHHHHh-------------
Confidence 5 6788887 8888887 8889999999999999999999888 788889998888875
Q ss_pred cCCHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhCChhhhhcCCCCCCCcchhhhhhhHHHHHHHHhcccCCCcHhHH
Q 005912 318 AASKMVVSELKEELDAQGL-PTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDELISRIKLEEGNTEFW 396 (670)
Q Consensus 318 ~g~~~~A~~l~~~M~~~Gi-p~d~t~~~Ll~a~~~aG~~~eA~~~~~~~p~~e~~~~~vdeE~~~li~~~~~~~~~~~~w 396 (670)
.|.+++|.++|++|...|+ |+..||++|+.+|++.|++++|..+ ...+...... ++...|
T Consensus 627 ~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l------------------~~eM~k~G~~-pd~~ty 687 (1060)
T PLN03218 627 KGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI------------------LQDARKQGIK-LGTVSY 687 (1060)
T ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH------------------HHHHHHcCCC-CCHHHH
Confidence 4558899999999999998 6668999999999999998888643 1112222222 244444
Q ss_pred HHhhhccCcCCCCCccccccccccccccCcCcchhhHhhhchhhhHHHHHhhcCCCcchhhhHHHHHHhhcCchhhHHhh
Q 005912 397 KRRFLGEGLNGRHDKAVEMDESELSDVLDDDVTDVEYVAKDEEADEEEEVEQAEPESQDVDRVKEKLVEAKKPLQMIGVQ 476 (670)
Q Consensus 397 ~~~llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (670)
.. ++.++...+
T Consensus 688 ns-LI~ay~k~G-------------------------------------------------------------------- 698 (1060)
T PLN03218 688 SS-LMGACSNAK-------------------------------------------------------------------- 698 (1060)
T ss_pred HH-HHHHHHhCC--------------------------------------------------------------------
Confidence 43 332221110
Q ss_pred hcccccccchhhhcccccccCcccCCCCCCCCCCChHHHHHHhhhccC-CcchhhHHHHHHhcchhhhhhccCCCCCchh
Q 005912 477 LLKDSDQTTTTSKRSMKRSSRMVEDDDDEDWFPEDPFEAFKEMRKRKV-FDVSDMYTIADAWGWTWEREITNRPPQKWSQ 555 (670)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (670)
+ .+...+.|++|++.|+ +|+..+..+.+.+. +
T Consensus 699 -----------------------------~--~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~----------------k 731 (1060)
T PLN03218 699 -----------------------------N--WKKALELYEDIKSIKLRPTVSTMNALITALC----------------E 731 (1060)
T ss_pred -----------------------------C--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----------------H
Confidence 1 3456678889999888 88888888888883 3
Q ss_pred HHHHHHHHHHHHHHHHcCCccChhcHHHHHHHHHcCCCcHHHHHHHHHhhhcCCccCcccHHHHHHHHhhh---------
Q 005912 556 EWEVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDL--------- 626 (670)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 626 (670)
..+++.|++++++|.+.|..|+..+|++||.++++.+..+.+..++..+.+.|..|+..+|+.+|.+|.+.
T Consensus 732 ~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~ 811 (1060)
T PLN03218 732 GNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGE 811 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 45666799999999999999999999999999999999999999999999999999999999999988641
Q ss_pred --------------chhHHHHHHHHHHHHhCCCCCchhHHHHhhhh
Q 005912 627 --------------GELDAAVAIVADMETTGIAVPDQTLDRVITSR 658 (670)
Q Consensus 627 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (670)
+-.+.|+.++..|.+.|+.|+..||..||...
T Consensus 812 ~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl 857 (1060)
T PLN03218 812 PVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCL 857 (1060)
T ss_pred hhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Confidence 12367999999999999999999999999553
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-48 Score=465.81 Aligned_cols=468 Identities=13% Similarity=0.094 Sum_probs=388.0
Q ss_pred CHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH-----------------------------------HHHHHHHHHcCC
Q 005912 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHF-----------------------------------NHLLSCQATCGI 45 (670)
Q Consensus 1 LI~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~ty-----------------------------------n~LI~~yak~G~ 45 (670)
||.+|++.|++++|+++|++|...|+.||.+|| |+||++|+++|+
T Consensus 158 li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~ 237 (857)
T PLN03077 158 LVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGD 237 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCC
Confidence 589999999999999999999999998887776 677888999999
Q ss_pred hHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHH
Q 005912 46 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTE 125 (670)
Q Consensus 46 ~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~ 125 (670)
++.|..+|++|+ .||++|||+||.+|+++| +.++|+++|.+|.+ .|+.||.+||+++|.+|++.|+++.
T Consensus 238 ~~~A~~lf~~m~------~~d~~s~n~li~~~~~~g---~~~eAl~lf~~M~~--~g~~Pd~~ty~~ll~a~~~~g~~~~ 306 (857)
T PLN03077 238 VVSARLVFDRMP------RRDCISWNAMISGYFENG---ECLEGLELFFTMRE--LSVDPDLMTITSVISACELLGDERL 306 (857)
T ss_pred HHHHHHHHhcCC------CCCcchhHHHHHHHHhCC---CHHHHHHHHHHHHH--cCCCCChhHHHHHHHHHHhcCChHH
Confidence 999999999999 799999999999999999 89999999999999 8999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHH
Q 005912 126 AIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPL 205 (670)
Q Consensus 126 A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll 205 (670)
|.++|..|.+.|+.+++. +||+||++|+++|++++|.++|++|...++ ++|++++.+|.-++..+.+.+++
T Consensus 307 a~~l~~~~~~~g~~~d~~--------~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~-~s~n~li~~~~~~g~~~~A~~lf 377 (857)
T PLN03077 307 GREMHGYVVKTGFAVDVS--------VCNSLIQMYLSLGSWGEAEKVFSRMETKDA-VSWTAMISGYEKNGLPDKALETY 377 (857)
T ss_pred HHHHHHHHHHhCCccchH--------HHHHHHHHHHhcCCHHHHHHHHhhCCCCCe-eeHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999988888777 999999999999999999999999988775 47888887777777788888899
Q ss_pred HHHHHcCCCHHH-----HHHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005912 206 QEEAELGYEIDY-----IARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQ 280 (670)
Q Consensus 206 ~~m~~~G~~pd~-----i~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~ 280 (670)
.+|.+.|+.||. +...|++.|..+.+..++..|.+.|+.|+. ++||+|| ++|++.|++++|.++|++|.
T Consensus 378 ~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~--~~~n~Li----~~y~k~g~~~~A~~vf~~m~ 451 (857)
T PLN03077 378 ALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYV--VVANALI----EMYSKCKCIDKALEVFHNIP 451 (857)
T ss_pred HHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcch--HHHHHHH----HHHHHcCCHHHHHHHHHhCC
Confidence 999999999885 346788889999999999999999999988 8898888 89999999999999999986
Q ss_pred HCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhCChhhhh
Q 005912 281 NEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGL-PTDGTRNVLYQRVQKARRINRSR 359 (670)
Q Consensus 281 ~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~Gi-p~d~t~~~Ll~a~~~aG~~~eA~ 359 (670)
.. +..+|+.++..+.+ .|..++|..+|++|.. ++ |+..||+++|.+|++.|.++.+.
T Consensus 452 ~~--------d~vs~~~mi~~~~~-------------~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~ 509 (857)
T PLN03077 452 EK--------DVISWTSIIAGLRL-------------NNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGK 509 (857)
T ss_pred CC--------CeeeHHHHHHHHHH-------------CCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhH
Confidence 53 44567788877764 5568999999999986 57 66699999999999999998876
Q ss_pred cCCCCCCCcchhhhhhhHHHHHHHHhcccCCCcHhHHHHhhhccCcCCCCCccccccccccccccCcCcchhhHhhhchh
Q 005912 360 GRPLWVPPVEEEEEEVDEEVDELISRIKLEEGNTEFWKRRFLGEGLNGRHDKAVEMDESELSDVLDDDVTDVEYVAKDEE 439 (670)
Q Consensus 360 ~~~~~~p~~e~~~~~vdeE~~~li~~~~~~~~~~~~w~~~llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (670)
.+ ...+.+..+.. +.....
T Consensus 510 ~i------------------~~~~~~~g~~~-~~~~~n------------------------------------------ 528 (857)
T PLN03077 510 EI------------------HAHVLRTGIGF-DGFLPN------------------------------------------ 528 (857)
T ss_pred HH------------------HHHHHHhCCCc-cceech------------------------------------------
Confidence 43 22222222221 111000
Q ss_pred hhHHHHHhhcCCCcchhhhHHHHHHhhcCchhhHHhhhcccccccchhhhcccccccCcccCCCCCCCCCCChHHHHHHh
Q 005912 440 ADEEEEVEQAEPESQDVDRVKEKLVEAKKPLQMIGVQLLKDSDQTTTTSKRSMKRSSRMVEDDDDEDWFPEDPFEAFKEM 519 (670)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (670)
+ .+.+.-|. . + .+...+.|++|
T Consensus 529 -------------------------------------a------Li~~y~k~----G---------~--~~~A~~~f~~~ 550 (857)
T PLN03077 529 -------------------------------------A------LLDLYVRC----G---------R--MNYAWNQFNSH 550 (857)
T ss_pred -------------------------------------H------HHHHHHHc----C---------C--HHHHHHHHHhc
Confidence 0 01111111 0 0 12334455555
Q ss_pred hhccCCcchhhHHHHHHhcchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHcCCccChhcHHHHHHHHHcCCCcHHHHH
Q 005912 520 RKRKVFDVSDMYTIADAWGWTWEREITNRPPQKWSQEWEVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLK 599 (670)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (670)
..|+..+.++..+++ +..+.+.|++++++|++.|..|+..+|+++|.|+.+.++++.+.+
T Consensus 551 ----~~d~~s~n~lI~~~~----------------~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~ 610 (857)
T PLN03077 551 ----EKDVVSWNILLTGYV----------------AHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLE 610 (857)
T ss_pred ----CCChhhHHHHHHHHH----------------HcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHH
Confidence 357777777777763 445566699999999999999999999999999999999999999
Q ss_pred HHHHhh-hcCCccCcccHHHHHHHHhhhchhHHHHHHHHHHHHhCCCCCchhHHHHhhhh
Q 005912 600 ILQKTH-SLGYVFGSPLYDEIISLCLDLGELDAAVAIVADMETTGIAVPDQTLDRVITSR 658 (670)
Q Consensus 600 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (670)
+++.|. ..|..|+..+|..+|+++++.|.+++|..++..| ++.|+..++..+|++-
T Consensus 611 ~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac 667 (857)
T PLN03077 611 YFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNAC 667 (857)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHH
Confidence 999998 7899999999999999999999999999998877 5889999999888873
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-48 Score=465.40 Aligned_cols=525 Identities=13% Similarity=0.096 Sum_probs=351.6
Q ss_pred CHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH-----------------------------------HHHHHHHHHcCC
Q 005912 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHF-----------------------------------NHLLSCQATCGI 45 (670)
Q Consensus 1 LI~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~ty-----------------------------------n~LI~~yak~G~ 45 (670)
+|.+|++.|++++|+.+|+.|.+.|+.|+..+| |+||++|+++|+
T Consensus 57 ~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~ 136 (857)
T PLN03077 57 QLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGE 136 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCC
Confidence 477889999999999999999888877776665 888889999999
Q ss_pred hHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHH
Q 005912 46 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTE 125 (670)
Q Consensus 46 ~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~ 125 (670)
++.|+.+|++|+ .||+++||+||.+|++.| +.++|+++|.+|.. .|+.||.+||+++|.+|++.+++..
T Consensus 137 ~~~A~~~f~~m~------~~d~~~~n~li~~~~~~g---~~~~A~~~f~~M~~--~g~~Pd~~t~~~ll~~~~~~~~~~~ 205 (857)
T PLN03077 137 LVHAWYVFGKMP------ERDLFSWNVLVGGYAKAG---YFDEALCLYHRMLW--AGVRPDVYTFPCVLRTCGGIPDLAR 205 (857)
T ss_pred hHHHHHHHhcCC------CCCeeEHHHHHHHHHhCC---CHHHHHHHHHHHHH--cCCCCChhHHHHHHHHhCCccchhh
Confidence 999999999999 799999999999999999 89999999999999 8999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHH
Q 005912 126 AIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPL 205 (670)
Q Consensus 126 A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll 205 (670)
+.++|..|.+.|+.+++. +||+||++|+++|++++|..+|++|...++ ++|++++.+|.-++....+.+++
T Consensus 206 ~~~~~~~~~~~g~~~~~~--------~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~-~s~n~li~~~~~~g~~~eAl~lf 276 (857)
T PLN03077 206 GREVHAHVVRFGFELDVD--------VVNALITMYVKCGDVVSARLVFDRMPRRDC-ISWNAMISGYFENGECLEGLELF 276 (857)
T ss_pred HHHHHHHHHHcCCCcccc--------hHhHHHHHHhcCCCHHHHHHHHhcCCCCCc-chhHHHHHHHHhCCCHHHHHHHH
Confidence 999999999988877665 566666666666666666666666655543 34555554444444445555556
Q ss_pred HHHHHcCCCHHHHH-----HHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005912 206 QEEAELGYEIDYIA-----RYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQ 280 (670)
Q Consensus 206 ~~m~~~G~~pd~i~-----~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~ 280 (670)
.+|.+.|+.||.++ ..|+..|..+.+..++..|.+.|+.||. ++||+|| .+|++.|++++|.++|++|.
T Consensus 277 ~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~--~~~n~Li----~~y~k~g~~~~A~~vf~~m~ 350 (857)
T PLN03077 277 FTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDV--SVCNSLI----QMYLSLGSWGEAEKVFSRME 350 (857)
T ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccch--HHHHHHH----HHHHhcCCHHHHHHHHhhCC
Confidence 66666666655432 3455555556666666666555555555 5555555 55555555555555555554
Q ss_pred HCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhCChhhhh
Q 005912 281 NEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGL-PTDGTRNVLYQRVQKARRINRSR 359 (670)
Q Consensus 281 ~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~Gi-p~d~t~~~Ll~a~~~aG~~~eA~ 359 (670)
. ++..+|+.++..+.+ .|..++|.++|++|.+.|+ |+..||++++.+|++.|++++|.
T Consensus 351 ~--------~d~~s~n~li~~~~~-------------~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~ 409 (857)
T PLN03077 351 T--------KDAVSWTAMISGYEK-------------NGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGV 409 (857)
T ss_pred C--------CCeeeHHHHHHHHHh-------------CCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHH
Confidence 2 233344444444432 2234444444444444444 33344444444444444444444
Q ss_pred cCCCCC------CCcchhhhhhh--------HHHHHHHHhcccCCCcHhHHHHhhhccCcCCCCCccccccccccccccC
Q 005912 360 GRPLWV------PPVEEEEEEVD--------EEVDELISRIKLEEGNTEFWKRRFLGEGLNGRHDKAVEMDESELSDVLD 425 (670)
Q Consensus 360 ~~~~~~------p~~e~~~~~vd--------eE~~~li~~~~~~~~~~~~w~~~llg~~~~~~~~~~~~~~~~~~~~~~~ 425 (670)
.++..+ |....+...++ +++.++..+|+. ++...|...+.+-+.++...++.
T Consensus 410 ~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~d~vs~~~mi~~~~~~g~~~eA~------------ 475 (857)
T PLN03077 410 KLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE--KDVISWTSIIAGLRLNNRCFEAL------------ 475 (857)
T ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHCCCHHHHH------------
Confidence 332111 11111111111 334444455542 25556765333444333221000
Q ss_pred cCcchhhHhhhchhhhHHHHHhhcCCCcchhhhHHHHHHhhcCchhhHHhhhcccccccchhhhcccccccCcccCCCCC
Q 005912 426 DDVTDVEYVAKDEEADEEEEVEQAEPESQDVDRVKEKLVEAKKPLQMIGVQLLKDSDQTTTTSKRSMKRSSRMVEDDDDE 505 (670)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (670)
+.-+.+. +.-+|....-..+| .++-+. +
T Consensus 476 -------------------------------~lf~~m~-~~~~pd~~t~~~lL-------~a~~~~-------------g 503 (857)
T PLN03077 476 -------------------------------IFFRQML-LTLKPNSVTLIAAL-------SACARI-------------G 503 (857)
T ss_pred -------------------------------HHHHHHH-hCCCCCHhHHHHHH-------HHHhhh-------------c
Confidence 0000000 01222222222221 122211 0
Q ss_pred CCCCCChHHHHHHhhhccC-CcchhhHHHHHHhcchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHcCCccChhcHHHH
Q 005912 506 DWFPEDPFEAFKEMRKRKV-FDVSDMYTIADAWGWTWEREITNRPPQKWSQEWEVELAIQIMLKVIELGGTPTIGDCAVI 584 (670)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (670)
+ .....+.+..|.+.|+ +|+.....+-|.+. ..+ .++.|.+++..+ .|++.+|++|
T Consensus 504 ~--l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~--------------k~G--~~~~A~~~f~~~-----~~d~~s~n~l 560 (857)
T PLN03077 504 A--LMCGKEIHAHVLRTGIGFDGFLPNALLDLYV--------------RCG--RMNYAWNQFNSH-----EKDVVSWNIL 560 (857)
T ss_pred h--HHHhHHHHHHHHHhCCCccceechHHHHHHH--------------HcC--CHHHHHHHHHhc-----CCChhhHHHH
Confidence 1 2445678888899998 88888888888872 233 455599999886 8999999999
Q ss_pred HHHHHcCCCcHHHHHHHHHhhhcCCccCcccHHHHHHHHhhhchhHHHHHHHHHHH-HhCCCCCchhHHHHhhhhccC
Q 005912 585 IRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGELDAAVAIVADME-TTGIAVPDQTLDRVITSRQTG 661 (670)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 661 (670)
|.++++.+.++.++.+++.|...|..|+..+|..+|.+|+..|.+++|..++..|. ..||.|.-+||.-+|..--+.
T Consensus 561 I~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~ 638 (857)
T PLN03077 561 LTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRA 638 (857)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999 789999999999988874443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-47 Score=448.20 Aligned_cols=425 Identities=13% Similarity=0.120 Sum_probs=355.1
Q ss_pred CHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHc
Q 005912 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 80 (670)
Q Consensus 1 LI~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~ 80 (670)
||.+|++.++++.|..++..|...|+.||..+||+||++|+++|+++.|.++|++|+ .||.+|||+||.+|++.
T Consensus 129 ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~------~~~~~t~n~li~~~~~~ 202 (697)
T PLN03081 129 LVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP------ERNLASWGTIIGGLVDA 202 (697)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC------CCCeeeHHHHHHHHHHC
Confidence 467888888888899999999989999999999999999999999999999999998 68999999999999999
Q ss_pred CCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHH
Q 005912 81 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRAL 160 (670)
Q Consensus 81 g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay 160 (670)
| +.++|+++|.+|.+ .|+.||..||+++|.+|++.|.+..+.++|..+.+.|+.+++. +||+||++|
T Consensus 203 g---~~~~A~~lf~~M~~--~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~--------~~n~Li~~y 269 (697)
T PLN03081 203 G---NYREAFALFREMWE--DGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTF--------VSCALIDMY 269 (697)
T ss_pred c---CHHHHHHHHHHHHH--hCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccce--------eHHHHHHHH
Confidence 9 78899999999998 8999999999999999999999999999999999988777766 899999999
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHH-----HHHHcCCcHHHHHHHH
Q 005912 161 CREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIA-----RYISEGGLTGERKRWV 235 (670)
Q Consensus 161 ~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~-----~~~~~~g~~~~a~~lf 235 (670)
+++|++++|.++|++|..+++ +.|++++.+|..++..+.+.+++.+|.+.|+.||..+ ..|++.|.++.|..++
T Consensus 270 ~k~g~~~~A~~vf~~m~~~~~-vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~ 348 (697)
T PLN03081 270 SKCGDIEDARCVFDGMPEKTT-VAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAH 348 (697)
T ss_pred HHCCCHHHHHHHHHhCCCCCh-hHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHH
Confidence 999999999999999987765 4677777666666667777778888888888887544 5677888888888888
Q ss_pred HHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccc
Q 005912 236 PRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLK 315 (670)
Q Consensus 236 ~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~ 315 (670)
..|.+.|+.|+. ++||+|| ++|++.|++++|.++|++|.. ++..+|+.++..|.+
T Consensus 349 ~~m~~~g~~~d~--~~~~~Li----~~y~k~G~~~~A~~vf~~m~~--------~d~~t~n~lI~~y~~----------- 403 (697)
T PLN03081 349 AGLIRTGFPLDI--VANTALV----DLYSKWGRMEDARNVFDRMPR--------KNLISWNALIAGYGN----------- 403 (697)
T ss_pred HHHHHhCCCCCe--eehHHHH----HHHHHCCCHHHHHHHHHhCCC--------CCeeeHHHHHHHHHH-----------
Confidence 888888888887 8888777 888888888888888888853 355577777777764
Q ss_pred cccCCHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhCChhhhhcCCCCCCCcchhhhhhhHHHHHHHHhcccCCCcHh
Q 005912 316 PKAASKMVVSELKEELDAQGL-PTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDELISRIKLEEGNTE 394 (670)
Q Consensus 316 ~~~g~~~~A~~l~~~M~~~Gi-p~d~t~~~Ll~a~~~aG~~~eA~~~~~~~p~~e~~~~~vdeE~~~li~~~~~~~~~~~ 394 (670)
+|..++|.++|++|...|+ |+..||++||++|++.|++++|..
T Consensus 404 --~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~---------------------------------- 447 (697)
T PLN03081 404 --HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWE---------------------------------- 447 (697)
T ss_pred --cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHH----------------------------------
Confidence 5668888888888888888 666888888888888888876642
Q ss_pred HHHHhhhccCcCCCCCccccccccccccccCcCcchhhHhhhchhhhHHHHHhhcCCCcchhhhHHHHHHhhcCchhhHH
Q 005912 395 FWKRRFLGEGLNGRHDKAVEMDESELSDVLDDDVTDVEYVAKDEEADEEEEVEQAEPESQDVDRVKEKLVEAKKPLQMIG 474 (670)
Q Consensus 395 ~w~~~llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (670)
T Consensus 448 -------------------------------------------------------------------------------- 447 (697)
T PLN03081 448 -------------------------------------------------------------------------------- 447 (697)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcccccccchhhhcccccccCcccCCCCCCCCCCChHHHHHHhhh-ccC-CcchhhHHHHHHhcchhhhhhccCCCCC
Q 005912 475 VQLLKDSDQTTTTSKRSMKRSSRMVEDDDDEDWFPEDPFEAFKEMRK-RKV-FDVSDMYTIADAWGWTWEREITNRPPQK 552 (670)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (670)
.|+.|.+ .|+ +|+.-+..+.|+.|
T Consensus 448 ----------------------------------------~f~~m~~~~g~~p~~~~y~~li~~l~-------------- 473 (697)
T PLN03081 448 ----------------------------------------IFQSMSENHRIKPRAMHYACMIELLG-------------- 473 (697)
T ss_pred ----------------------------------------HHHHHHHhcCCCCCccchHhHHHHHH--------------
Confidence 2333332 244 56666777777775
Q ss_pred chhHHHHHHHHHHHHHHHHcCCccChhcHHHHHHHHHcCCCcHHHHHHHHHhhhcCCccC-cccHHHHHHHHhhhchhHH
Q 005912 553 WSQEWEVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFG-SPLYDEIISLCLDLGELDA 631 (670)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 631 (670)
+...++.|.+++++| +..|+..+|++||.|+.+....+.+..+++++. +..|. ...|..++..|++.|+|++
T Consensus 474 --r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~--~~~p~~~~~y~~L~~~y~~~G~~~~ 546 (697)
T PLN03081 474 --REGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY--GMGPEKLNNYVVLLNLYNSSGRQAE 546 (697)
T ss_pred --hcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh--CCCCCCCcchHHHHHHHHhCCCHHH
Confidence 233466699998875 899999999999999999999999999998885 55675 5699999999999999999
Q ss_pred HHHHHHHHHHhCCCCC
Q 005912 632 AVAIVADMETTGIAVP 647 (670)
Q Consensus 632 ~~~~~~~~~~~~~~~~ 647 (670)
|..++..|++.|+..+
T Consensus 547 A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 547 AAKVVETLKRKGLSMH 562 (697)
T ss_pred HHHHHHHHHHcCCccC
Confidence 9999999999999754
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-44 Score=422.60 Aligned_cols=440 Identities=14% Similarity=0.136 Sum_probs=380.9
Q ss_pred CHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHH
Q 005912 1 MIAEDCKAGDHSNALEIAYEMEAAG-RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 79 (670)
Q Consensus 1 LI~~y~k~G~~~~Al~lf~~M~~~G-v~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k 79 (670)
+|.+|++.|++++|+++|+.|...+ +.||..||++|+.+|++.++++.|..++..|. ..|+.||..+||+||.+|++
T Consensus 93 ~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~--~~g~~~~~~~~n~Li~~y~k 170 (697)
T PLN03081 93 QIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVE--SSGFEPDQYMMNRVLLMHVK 170 (697)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH--HhCCCcchHHHHHHHHHHhc
Confidence 4788999999999999999998764 78999999999999999999999999999999 78999999999999999999
Q ss_pred cCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHH
Q 005912 80 AESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRA 159 (670)
Q Consensus 80 ~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~a 159 (670)
.| ++++|.++|++|.+ ||.+||+++|.+|++.|++++|.++|++|.+.|+.|+.. ||+++|.+
T Consensus 171 ~g---~~~~A~~lf~~m~~------~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~--------t~~~ll~a 233 (697)
T PLN03081 171 CG---MLIDARRLFDEMPE------RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPR--------TFVVMLRA 233 (697)
T ss_pred CC---CHHHHHHHHhcCCC------CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChh--------hHHHHHHH
Confidence 99 89999999999964 899999999999999999999999999999988777666 99999999
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhc
Q 005912 160 LCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRG 239 (670)
Q Consensus 160 y~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~ 239 (670)
|++.|..+.+.+++..|.+.|+ .++.. +|+.+++.+ ++.|.+++|..+|+.|.
T Consensus 234 ~~~~~~~~~~~~l~~~~~~~g~--~~d~~----~~n~Li~~y---------------------~k~g~~~~A~~vf~~m~ 286 (697)
T PLN03081 234 SAGLGSARAGQQLHCCVLKTGV--VGDTF----VSCALIDMY---------------------SKCGDIEDARCVFDGMP 286 (697)
T ss_pred HhcCCcHHHHHHHHHHHHHhCC--Cccce----eHHHHHHHH---------------------HHCCCHHHHHHHHHhCC
Confidence 9999999999999999999997 56665 388888777 88899999999999996
Q ss_pred cCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccC
Q 005912 240 KTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAA 319 (670)
Q Consensus 240 ~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g 319 (670)
. +|. ++||+|| .+|+++|+.++|+++|++|...|+. |+..+|+.++.+|.+.+
T Consensus 287 ~----~~~--vt~n~li----~~y~~~g~~~eA~~lf~~M~~~g~~----pd~~t~~~ll~a~~~~g------------- 339 (697)
T PLN03081 287 E----KTT--VAWNSML----AGYALHGYSEEALCLYYEMRDSGVS----IDQFTFSIMIRIFSRLA------------- 339 (697)
T ss_pred C----CCh--hHHHHHH----HHHHhCCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhcc-------------
Confidence 4 344 9999988 8999999999999999999999999 89999999999998654
Q ss_pred CHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHhCChhhhhcCCCCCCCcchhhhhhhHHHHHHHHhcccCCCcHhHHHH
Q 005912 320 SKMVVSELKEELDAQGLPTD-GTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDELISRIKLEEGNTEFWKR 398 (670)
Q Consensus 320 ~~~~A~~l~~~M~~~Gip~d-~t~~~Ll~a~~~aG~~~eA~~~~~~~p~~e~~~~~vdeE~~~li~~~~~~~~~~~~w~~ 398 (670)
.+++|.+++..|.+.|++++ .+||+|+.+|++.|++++|..++.. |. .++...|-.
T Consensus 340 ~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~---------------------m~--~~d~~t~n~ 396 (697)
T PLN03081 340 LLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDR---------------------MP--RKNLISWNA 396 (697)
T ss_pred chHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHh---------------------CC--CCCeeeHHH
Confidence 48999999999999999555 8999999999999999998765433 22 135566775
Q ss_pred hhhccCcCCCCCccccccccccccccCcCcchhhHhhhchhhhHHHHHhhcCCCcchhhhHHHHHHhhcCchhhHHhhhc
Q 005912 399 RFLGEGLNGRHDKAVEMDESELSDVLDDDVTDVEYVAKDEEADEEEEVEQAEPESQDVDRVKEKLVEAKKPLQMIGVQLL 478 (670)
Q Consensus 399 ~llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (670)
++.++..++.
T Consensus 397 -lI~~y~~~G~--------------------------------------------------------------------- 406 (697)
T PLN03081 397 -LIAGYGNHGR--------------------------------------------------------------------- 406 (697)
T ss_pred -HHHHHHHcCC---------------------------------------------------------------------
Confidence 3333322211
Q ss_pred ccccccchhhhcccccccCcccCCCCCCCCCCChHHHHHHhhhccC-CcchhhHHHHHHhcchhhhhhccCCCCCchhHH
Q 005912 479 KDSDQTTTTSKRSMKRSSRMVEDDDDEDWFPEDPFEAFKEMRKRKV-FDVSDMYTIADAWGWTWEREITNRPPQKWSQEW 557 (670)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (670)
+....++|++|.+.|+ +|..-+..+..+|. . ..
T Consensus 407 ------------------------------~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~--------------~--~g 440 (697)
T PLN03081 407 ------------------------------GTKAVEMFERMIAEGVAPNHVTFLAVLSACR--------------Y--SG 440 (697)
T ss_pred ------------------------------HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh--------------c--CC
Confidence 3557789999999999 99999999999993 3 34
Q ss_pred HHHHHHHHHHHHHH-cCCccChhcHHHHHHHHHcCCCcHHHHHHHHHhhhcCCccCcccHHHHHHHHhhhchhHHHHHHH
Q 005912 558 EVELAIQIMLKVIE-LGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGELDAAVAIV 636 (670)
Q Consensus 558 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (670)
.++.|.++++.|.+ .|..|++.+|+.||.+++|++..+.+..+++. .+..|+..+|..+|.+|...|+++.|..+.
T Consensus 441 ~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~---~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~ 517 (697)
T PLN03081 441 LSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR---APFKPTVNMWAALLTACRIHKNLELGRLAA 517 (697)
T ss_pred cHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 56669999999985 79999999999999999999999999999875 489999999999999999999999999999
Q ss_pred HHHHHhCCCCCc-hhHHHHhhh
Q 005912 637 ADMETTGIAVPD-QTLDRVITS 657 (670)
Q Consensus 637 ~~~~~~~~~~~~-~~~~~~~~~ 657 (670)
..|. ++.|.+ .+|.-++..
T Consensus 518 ~~l~--~~~p~~~~~y~~L~~~ 537 (697)
T PLN03081 518 EKLY--GMGPEKLNNYVVLLNL 537 (697)
T ss_pred HHHh--CCCCCCCcchHHHHHH
Confidence 8885 566653 466655543
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.4e-13 Score=160.24 Aligned_cols=486 Identities=11% Similarity=0.021 Sum_probs=303.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
..|...|++++|+..|..+....-. +......++..|.+.|++++|..+++.+. ....++..+|+.+...|.+.|
T Consensus 405 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~- 479 (899)
T TIGR02917 405 ISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLE---KKQPDNASLHNLLGAIYLGKG- 479 (899)
T ss_pred HHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHH---HhCCCCcHHHHHHHHHHHhCC-
Confidence 4567888999999999888765322 33455667888889999999999999887 233457788899999999998
Q ss_pred cccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCR 162 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k 162 (670)
+.++|...|.++.. .. ..+...+..+...+...|++++|.++|..+...... +.. +++.+...|.+
T Consensus 480 --~~~~A~~~~~~a~~--~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~--------~~~~l~~~~~~ 545 (899)
T TIGR02917 480 --DLAKAREAFEKALS--IE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLR--------AILALAGLYLR 545 (899)
T ss_pred --CHHHHHHHHHHHHh--hC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHH--------HHHHHHHHHHH
Confidence 78889999988876 21 234566777888888999999999999988775422 122 78888888889
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCchHH---HHhHHHHHHHHHHHHHHHHHHcCC-CHHH---HHHHHHcCCcHHHHHHHH
Q 005912 163 EGRIIELLEALEAMAKDNQPVPPRAMI---LSRKYRTLVSSWIEPLQEEAELGY-EIDY---IARYISEGGLTGERKRWV 235 (670)
Q Consensus 163 ~G~~eeA~~vf~~M~~~gi~i~p~~~i---~~~ty~~ll~a~~~ll~~m~~~G~-~pd~---i~~~~~~~g~~~~a~~lf 235 (670)
.|+.++|..+|+.+.+.+.. ...... ..+...+-...+...+..+..... .+.. +...+...|..++|...|
T Consensus 546 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 624 (899)
T TIGR02917 546 TGNEEEAVAWLEKAAELNPQ-EIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSF 624 (899)
T ss_pred cCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999888766521 111100 001111112333344555544322 2222 234566777888888888
Q ss_pred HHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccc
Q 005912 236 PRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLK 315 (670)
Q Consensus 236 ~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~ 315 (670)
+.+.... |+. ...+.. +...|.+.|+.++|..+|+.+....-. +...+..+...+.
T Consensus 625 ~~~~~~~--~~~-~~~~~~----l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~------------ 680 (899)
T TIGR02917 625 KKLLALQ--PDS-ALALLL----LADAYAVMKNYAKAITSLKRALELKPD-----NTEAQIGLAQLLL------------ 680 (899)
T ss_pred HHHHHhC--CCC-hHHHHH----HHHHHHHcCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHH------------
Confidence 8876532 321 133333 347778888888888888887754322 3344444444443
Q ss_pred cccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCChhhhhcCCCCCCCcchhhhhhhHHHHHHHHhcccCCCcHhH
Q 005912 316 PKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDELISRIKLEEGNTEF 395 (670)
Q Consensus 316 ~~~g~~~~A~~l~~~M~~~Gip~d~t~~~Ll~a~~~aG~~~eA~~~~~~~p~~e~~~~~vdeE~~~li~~~~~~~~~~~~ 395 (670)
..|++++|..+++.+...+......+..+...+...|++++|...+ ...+.. .+.+ ..
T Consensus 681 -~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~-----------------~~~~~~---~~~~-~~ 738 (899)
T TIGR02917 681 -AAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAY-----------------RKALKR---APSS-QN 738 (899)
T ss_pred -HcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHH-----------------HHHHhh---CCCc-hH
Confidence 4566888889999888877544467777888888888888886542 222221 1111 22
Q ss_pred HHHhhhcc-CcCCCCCccccccccccccccCcCcchhhHhhhchhhhHHHHHhhcCCCcchhhhHHHHHHhhcCchhhHH
Q 005912 396 WKRRFLGE-GLNGRHDKAVEMDESELSDVLDDDVTDVEYVAKDEEADEEEEVEQAEPESQDVDRVKEKLVEAKKPLQMIG 474 (670)
Q Consensus 396 w~~~llg~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (670)
+.. +... ...+... +..+.. ....+ ..|....+
T Consensus 739 ~~~-l~~~~~~~g~~~----------------------------~A~~~~-~~~l~----------------~~~~~~~~ 772 (899)
T TIGR02917 739 AIK-LHRALLASGNTA----------------------------EAVKTL-EAWLK----------------THPNDAVL 772 (899)
T ss_pred HHH-HHHHHHHCCCHH----------------------------HHHHHH-HHHHH----------------hCCCCHHH
Confidence 211 0000 0000000 000000 00000 00000000
Q ss_pred hhhcccccccchhhhcccccccCcccCCCCCCCCCCChHHHHHHhhhccCCcchhhHHHHHHhcchhhhhhccCCCCCch
Q 005912 475 VQLLKDSDQTTTTSKRSMKRSSRMVEDDDDEDWFPEDPFEAFKEMRKRKVFDVSDMYTIADAWGWTWEREITNRPPQKWS 554 (670)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (670)
...+ .....+. ++ +....+.|+.+.+..+.+...++.++.++. -.
T Consensus 773 ~~~l------a~~~~~~-------------g~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~--------------~~ 817 (899)
T TIGR02917 773 RTAL------AELYLAQ-------------KD--YDKAIKHYRTVVKKAPDNAVVLNNLAWLYL--------------EL 817 (899)
T ss_pred HHHH------HHHHHHC-------------cC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--------------hc
Confidence 0000 0000000 01 355777888888888777777888877762 12
Q ss_pred hHHHHHHHHHHHHHHHHcCCccChhcHHHHHHHHHcCCCcHHHHHHHHHhhhcCCccCcccHHHHHHHHhhhchhHHHHH
Q 005912 555 QEWEVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGELDAAVA 634 (670)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (670)
.. ..|+.++.+.+++... +...+..+-....+...++.++++++++.+++-. ...+|..+..++.+.|++++|+.
T Consensus 818 ~~---~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 892 (899)
T TIGR02917 818 KD---PRALEYAEKALKLAPN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARK 892 (899)
T ss_pred Cc---HHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHH
Confidence 22 2399999999876422 1223344555566889999999999999999865 78899999999999999999999
Q ss_pred HHHHHH
Q 005912 635 IVADME 640 (670)
Q Consensus 635 ~~~~~~ 640 (670)
++.+|.
T Consensus 893 ~~~~~~ 898 (899)
T TIGR02917 893 ELDKLL 898 (899)
T ss_pred HHHHHh
Confidence 999885
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.9e-12 Score=149.08 Aligned_cols=308 Identities=10% Similarity=-0.008 Sum_probs=207.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcC
Q 005912 2 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 81 (670)
Q Consensus 2 I~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g 81 (670)
...+.+.|++++|+.++..+.... ..+...++.+...|.+.|++++|..+|+++.. .. ..+...|..+...+...|
T Consensus 336 a~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~~~~l~~~~~~~~ 411 (899)
T TIGR02917 336 ASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATE--LD-PENAAARTQLGISKLSQG 411 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cC-CCCHHHHHHHHHHHHhCC
Confidence 356788999999999999998653 44678899999999999999999999999872 21 336778888889999999
Q ss_pred CcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHH
Q 005912 82 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALC 161 (670)
Q Consensus 82 ~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~ 161 (670)
+.++|++.|..+.. ... .+......++..|.+.|++++|..++..+...... + +.+|+.+...|.
T Consensus 412 ---~~~~A~~~~~~a~~--~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~--------~~~~~~l~~~~~ 476 (899)
T TIGR02917 412 ---DPSEAIADLETAAQ--LDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPD-N--------ASLHNLLGAIYL 476 (899)
T ss_pred ---ChHHHHHHHHHHHh--hCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-C--------cHHHHHHHHHHH
Confidence 78899999999876 322 12345667888999999999999999999875322 2 227999999999
Q ss_pred HcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHH---------HHHHHHHHHHHHHcCCC-HH---HHHHHHHcCCcH
Q 005912 162 REGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTL---------VSSWIEPLQEEAELGYE-ID---YIARYISEGGLT 228 (670)
Q Consensus 162 k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~l---------l~a~~~ll~~m~~~G~~-pd---~i~~~~~~~g~~ 228 (670)
+.|++++|...|+++.+.+. +... .+..+ ...+...+..+....-. +. .+...+...|..
T Consensus 477 ~~~~~~~A~~~~~~a~~~~~----~~~~---~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 549 (899)
T TIGR02917 477 GKGDLAKAREAFEKALSIEP----DFFP---AAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNE 549 (899)
T ss_pred hCCCHHHHHHHHHHHHhhCC----CcHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCH
Confidence 99999999999999877542 2111 12222 23333445544443221 11 122345556677
Q ss_pred HHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCC
Q 005912 229 GERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKG 308 (670)
Q Consensus 229 ~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~ 308 (670)
+++..+|..+.... |+. ...+.. +...|.+.|+.++|..+++.+..... .+...+..+...+.
T Consensus 550 ~~A~~~~~~~~~~~--~~~-~~~~~~----l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~----- 612 (899)
T TIGR02917 550 EEAVAWLEKAAELN--PQE-IEPALA----LAQYYLGKGQLKKALAILNEAADAAP-----DSPEAWLMLGRAQL----- 612 (899)
T ss_pred HHHHHHHHHHHHhC--ccc-hhHHHH----HHHHHHHCCCHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHH-----
Confidence 77777777765432 221 122222 33667777777777777777765432 13333444333333
Q ss_pred CcccccccccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCChhhhhc
Q 005912 309 PEQHVLKPKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRG 360 (670)
Q Consensus 309 p~~~~L~~~~g~~~~A~~l~~~M~~~Gip~d~t~~~Ll~a~~~aG~~~eA~~ 360 (670)
..|.+++|...|+.+....-.+...+..+...+...|++++|..
T Consensus 613 --------~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 656 (899)
T TIGR02917 613 --------AAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAIT 656 (899)
T ss_pred --------HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH
Confidence 34557777777777766543233566677777777777777653
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.3e-11 Score=132.69 Aligned_cols=288 Identities=13% Similarity=0.031 Sum_probs=204.2
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC---HHHHHHHHHHHHHcC
Q 005912 5 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD---TETYNCVIQAYTRAE 81 (670)
Q Consensus 5 y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd---~~tyn~LI~ay~k~g 81 (670)
+...|++++|+..|.++.+.+ ..+..++..+...|.+.|++++|..+|+.+. ..+..++ ..+|+.+...|.+.|
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l--~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLL--SRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 457799999999999999863 2356689999999999999999999999998 4332221 367899999999999
Q ss_pred CcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHH
Q 005912 82 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALC 161 (670)
Q Consensus 82 ~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~ 161 (670)
+.++|+.+|.++.+ . -.++..++..+...|.+.|++++|.+++..+.+.+..+... .....|..+...|.
T Consensus 122 ---~~~~A~~~~~~~l~--~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~~~~la~~~~ 191 (389)
T PRK11788 122 ---LLDRAEELFLQLVD--E-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV----EIAHFYCELAQQAL 191 (389)
T ss_pred ---CHHHHHHHHHHHHc--C-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH----HHHHHHHHHHHHHH
Confidence 78899999999986 3 23567899999999999999999999999998754322110 00014667888899
Q ss_pred HcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccC
Q 005912 162 REGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKT 241 (670)
Q Consensus 162 k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~ 241 (670)
+.|++++|..+|+++.+.. |+... .+..+.. .+...|..++|..+|+.+...
T Consensus 192 ~~~~~~~A~~~~~~al~~~----p~~~~---~~~~la~---------------------~~~~~g~~~~A~~~~~~~~~~ 243 (389)
T PRK11788 192 ARGDLDAARALLKKALAAD----PQCVR---ASILLGD---------------------LALAQGDYAAAIEALERVEEQ 243 (389)
T ss_pred hCCCHHHHHHHHHHHHhHC----cCCHH---HHHHHHH---------------------HHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999997754 22211 1222222 235667888888888887653
Q ss_pred CCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCH
Q 005912 242 PLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASK 321 (670)
Q Consensus 242 gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~ 321 (670)
. |+....+++.+ ...|++.|+.++|..+|+.+.... |+...+..+...+. +.|..
T Consensus 244 ~--p~~~~~~~~~l----~~~~~~~g~~~~A~~~l~~~~~~~------p~~~~~~~la~~~~-------------~~g~~ 298 (389)
T PRK11788 244 D--PEYLSEVLPKL----MECYQALGDEAEGLEFLRRALEEY------PGADLLLALAQLLE-------------EQEGP 298 (389)
T ss_pred C--hhhHHHHHHHH----HHHHHHcCCHHHHHHHHHHHHHhC------CCchHHHHHHHHHH-------------HhCCH
Confidence 2 33211334433 377888888888888888887653 33333333333333 45568
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHH---hCChhhhh
Q 005912 322 MVVSELKEELDAQGLPTDGTRNVLYQRVQK---ARRINRSR 359 (670)
Q Consensus 322 ~~A~~l~~~M~~~Gip~d~t~~~Ll~a~~~---aG~~~eA~ 359 (670)
++|..+++++.+. .|+..+++.++..++. .|+..++.
T Consensus 299 ~~A~~~l~~~l~~-~P~~~~~~~l~~~~~~~~~~g~~~~a~ 338 (389)
T PRK11788 299 EAAQALLREQLRR-HPSLRGFHRLLDYHLAEAEEGRAKESL 338 (389)
T ss_pred HHHHHHHHHHHHh-CcCHHHHHHHHHHhhhccCCccchhHH
Confidence 8888888887765 4777788877777665 33555554
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.7e-11 Score=125.48 Aligned_cols=465 Identities=14% Similarity=0.118 Sum_probs=282.5
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HcCChH-HHHHHHHHchh-C----------------CCCCC
Q 005912 5 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQA--TCGIPE-VAFATFENMEY-G----------------EDYMK 64 (670)
Q Consensus 5 y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~ya--k~G~~e-~A~~lf~~M~~-~----------------~~gi~ 64 (670)
+...|.+.++.-+++.|+..|+..+...--.|+..-+ ...++- .-++-|-.|.. | ..-..
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~P 204 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLP 204 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcC
Confidence 4557888999999999999998887776666655432 111111 11122222221 0 00013
Q ss_pred CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccc
Q 005912 65 PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLH 144 (670)
Q Consensus 65 Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~ 144 (670)
....||.+||.|+|+-. ..+.|.++|.+-.+ ...+.+..+||.+|.+-+- -.+..+..+|......|++.
T Consensus 205 KT~et~s~mI~Gl~K~~---~~ERA~~L~kE~~~--~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~- 274 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFS---SLERARELYKEHRA--AKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLF- 274 (625)
T ss_pred CCchhHHHHHHHHHHHH---hHHHHHHHHHHHHH--hhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchH-
Confidence 56789999999999998 89999999999998 8889999999999987653 33488999999988888877
Q ss_pred cCCCCchHHHHHHHHHHHcCCHHH----HHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 005912 145 NEGNFGDPLSLYLRALCREGRIIE----LLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIAR 220 (670)
Q Consensus 145 ~~g~~pdtyn~LI~ay~k~G~~ee----A~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~ 220 (670)
|+|+++++.++.|+++. |++++.+|++-|+ .|..- +|+-++...
T Consensus 275 -------TfNalL~c~akfg~F~~ar~aalqil~EmKeiGV--ePsLs----Syh~iik~f------------------- 322 (625)
T KOG4422|consen 275 -------TFNALLSCAAKFGKFEDARKAALQILGEMKEIGV--EPSLS----SYHLIIKNF------------------- 322 (625)
T ss_pred -------hHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCC--Ccchh----hHHHHHHHh-------------------
Confidence 99999999999998875 5678889999998 56543 366655532
Q ss_pred HHHcCCcHHHHHHHHHHhc----cCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCccCC-CCHHH
Q 005912 221 YISEGGLTGERKRWVPRRG----KTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNE-GPAVLGD-VSESD 294 (670)
Q Consensus 221 ~~~~~g~~~~a~~lf~~m~----~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~-gv~~~g~-~~~~~ 294 (670)
|..++..+-+..|...+. -+.++|-. -+.|-....-+.-+.+..+.+.|.++-.-+... +....|. -....
T Consensus 323 -~re~dp~k~as~~i~dI~N~ltGK~fkp~~--p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~f 399 (625)
T KOG4422|consen 323 -KRESDPQKVASSWINDIQNSLTGKTFKPIT--PTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNF 399 (625)
T ss_pred -cccCCchhhhHHHHHHHHHhhccCcccCCC--CchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHH
Confidence 344555555555554442 22233322 223322222335556777888888886665432 2221111 11122
Q ss_pred HHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhCChhhhhcCCCCCCCcchh-h
Q 005912 295 YVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGL-PTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEE-E 372 (670)
Q Consensus 295 ~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~Gi-p~d~t~~~Ll~a~~~aG~~~eA~~~~~~~p~~e~~-~ 372 (670)
|.+ .|-.++|+..+.+....+|+.|.-.-+ |+..+...++++...+|+++--..+...+-.-.|. .
T Consensus 400 Yyr------------~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r 467 (625)
T KOG4422|consen 400 YYR------------KFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFR 467 (625)
T ss_pred HHH------------HHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhh
Confidence 222 223344677778899999999998877 88899999999999999876433221111111111 2
Q ss_pred hhhhHHHHHHHHhcccCCCcHhHHHHhhhccCcCCCCCccccccccccccccCcCcchhhHhhhchhhhHHHHHhhcCCC
Q 005912 373 EEVDEEVDELISRIKLEEGNTEFWKRRFLGEGLNGRHDKAVEMDESELSDVLDDDVTDVEYVAKDEEADEEEEVEQAEPE 452 (670)
Q Consensus 373 ~~vdeE~~~li~~~~~~~~~~~~w~~~llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (670)
..+.+|+..++.+.+.++-..+ .+.-
T Consensus 468 ~~l~eeil~~L~~~k~hp~tp~---------------------------------------------------r~Ql--- 493 (625)
T KOG4422|consen 468 SDLREEILMLLARDKLHPLTPE---------------------------------------------------REQL--- 493 (625)
T ss_pred HHHHHHHHHHHhcCCCCCCChH---------------------------------------------------HHHH---
Confidence 2333455555544444431110 0000
Q ss_pred cchhhhHHHHHHhhcCchhhHHhhhcccccccchhhhcccccccCcccCCCCCCCCCCChHHHHHHhhhccCCcchhhHH
Q 005912 453 SQDVDRVKEKLVEAKKPLQMIGVQLLKDSDQTTTTSKRSMKRSSRMVEDDDDEDWFPEDPFEAFKEMRKRKVFDVSDMYT 532 (670)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (670)
+++..-|.+ |.. +-..+..+.||.+. |..+....
T Consensus 494 ----------------~~~~ak~aa--d~~---------------------------e~~e~~~~R~r~~~-~~~t~l~~ 527 (625)
T KOG4422|consen 494 ----------------QVAFAKCAA--DIK---------------------------EAYESQPIRQRAQD-WPATSLNC 527 (625)
T ss_pred ----------------HHHHHHHHH--HHH---------------------------HHHHhhHHHHHhcc-CChhHHHH
Confidence 000000000 000 00111223344333 45555555
Q ss_pred HHHHhcchhhhhhccCCCCCchhHHHHHHHHHHH-HHHHHcCCccChhcHHHHHHHHHcCCCcHHHHHHHHHhhhcCCcc
Q 005912 533 IADAWGWTWEREITNRPPQKWSQEWEVELAIQIM-LKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVF 611 (670)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (670)
||--.- + --....-||+ +.|+ .+=-+.-++|...-.+-++.+|-+..-|+++...||.+-.-....
T Consensus 528 ia~Ll~-------R---~G~~qkA~e~---l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~ 594 (625)
T KOG4422|consen 528 IAILLL-------R---AGRTQKAWEM---LGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPI 594 (625)
T ss_pred HHHHHH-------H---cchHHHHHHH---HHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchh
Confidence 554330 0 0022223554 4444 333477789999999999999999999999999999996655555
Q ss_pred CcccHHHHHHHHhhhchhHHHHHHHHHH
Q 005912 612 GSPLYDEIISLCLDLGELDAAVAIVADM 639 (670)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (670)
-.+|-..+..-|.=..+-.+|+.=+..|
T Consensus 595 ~E~La~RI~e~f~iNqeq~~~ls~l~~L 622 (625)
T KOG4422|consen 595 CEGLAQRIMEDFAINQEQKEALSNLTAL 622 (625)
T ss_pred hhHHHHHHHHhcCcCHHHHHHHhhhhhh
Confidence 5566677777777766666666554443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.2e-11 Score=132.83 Aligned_cols=283 Identities=13% Similarity=0.074 Sum_probs=211.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHH
Q 005912 2 IAEDCKAGDHSNALEIAYEMEAAGRMAT---TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYT 78 (670)
Q Consensus 2 I~~y~k~G~~~~Al~lf~~M~~~Gv~Pd---~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~ 78 (670)
...|.+.|++++|..+++.+...+..++ ...++.|...|.+.|+++.|..+|+++. .. -.++..+|+.++..|.
T Consensus 76 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l--~~-~~~~~~~~~~la~~~~ 152 (389)
T PRK11788 76 GNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLV--DE-GDFAEGALQQLLEIYQ 152 (389)
T ss_pred HHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--cC-CcchHHHHHHHHHHHH
Confidence 3567899999999999999987643332 3568899999999999999999999998 32 2457889999999999
Q ss_pred HcCCcccHHHHHHHHHHhHhccCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHH
Q 005912 79 RAESYDRVQDVAELLGMMVEDHKRLQPN----VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLS 154 (670)
Q Consensus 79 k~g~~~~~~eAl~lf~eM~~~~~gi~Pd----~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn 154 (670)
+.| +.++|+++|..+.. .+..++ ...|..+...+.+.|++++|..+|.++.+.... ... ++.
T Consensus 153 ~~g---~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~--------~~~ 218 (389)
T PRK11788 153 QEK---DWQKAIDVAERLEK--LGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQ-CVR--------ASI 218 (389)
T ss_pred Hhc---hHHHHHHHHHHHHH--hcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC-CHH--------HHH
Confidence 999 88899999999987 433332 224566777889999999999999999874321 111 788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHH
Q 005912 155 LYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRW 234 (670)
Q Consensus 155 ~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~l 234 (670)
.+...|.+.|++++|..+|+++.+.+ |+... ..+..+.. .+...|..++|..+
T Consensus 219 ~la~~~~~~g~~~~A~~~~~~~~~~~----p~~~~--~~~~~l~~---------------------~~~~~g~~~~A~~~ 271 (389)
T PRK11788 219 LLGDLALAQGDYAAAIEALERVEEQD----PEYLS--EVLPKLME---------------------CYQALGDEAEGLEF 271 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC----hhhHH--HHHHHHHH---------------------HHHHcCCHHHHHHH
Confidence 89999999999999999999998754 22110 11333333 23677899999999
Q ss_pred HHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCccccc
Q 005912 235 VPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVL 314 (670)
Q Consensus 235 f~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L 314 (670)
++.+... .|+. ..+.. +...+.+.|+.++|..+|..+... . |+...+..++..+....
T Consensus 272 l~~~~~~--~p~~--~~~~~----la~~~~~~g~~~~A~~~l~~~l~~--~----P~~~~~~~l~~~~~~~~-------- 329 (389)
T PRK11788 272 LRRALEE--YPGA--DLLLA----LAQLLEEQEGPEAAQALLREQLRR--H----PSLRGFHRLLDYHLAEA-------- 329 (389)
T ss_pred HHHHHHh--CCCc--hHHHH----HHHHHHHhCCHHHHHHHHHHHHHh--C----cCHHHHHHHHHHhhhcc--------
Confidence 9998764 3655 44433 448899999999999999998765 3 66777777665554321
Q ss_pred ccccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCChhh
Q 005912 315 KPKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINR 357 (670)
Q Consensus 315 ~~~~g~~~~A~~l~~~M~~~Gip~d~t~~~Ll~a~~~aG~~~e 357 (670)
.+|...++..+++.|.+.++.++.-| .|.++|.+.+
T Consensus 330 --~~g~~~~a~~~~~~~~~~~~~~~p~~-----~c~~cg~~~~ 365 (389)
T PRK11788 330 --EEGRAKESLLLLRDLVGEQLKRKPRY-----RCRNCGFTAR 365 (389)
T ss_pred --CCccchhHHHHHHHHHHHHHhCCCCE-----ECCCCCCCCc
Confidence 24578889999999999998333223 3667776644
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.8e-12 Score=96.85 Aligned_cols=50 Identities=30% Similarity=0.616 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHH
Q 005912 65 PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 119 (670)
Q Consensus 65 Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak 119 (670)
||++|||+||++|++.| +.++|+++|++|.+ .|+.||..||+++|++|||
T Consensus 1 P~~~~yn~li~~~~~~~---~~~~a~~l~~~M~~--~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAG---KFEEALKLFKEMKK--RGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCc---CHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHcC
Confidence 56666666666666666 56666666666666 6666666666666666653
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-09 Score=115.35 Aligned_cols=317 Identities=15% Similarity=0.141 Sum_probs=209.9
Q ss_pred CHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHc
Q 005912 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 80 (670)
Q Consensus 1 LI~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~ 80 (670)
||.|+|+-...++|.+++++-.+...+.+..+||.||.+-.-.- -.++..+|. +..+.||..|+|+++++.++.
T Consensus 213 mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMi--sqkm~Pnl~TfNalL~c~akf 286 (625)
T KOG4422|consen 213 MIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMI--SQKMTPNLFTFNALLSCAAKF 286 (625)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHH--HhhcCCchHhHHHHHHHHHHh
Confidence 68999999999999999999999888999999999997644222 277889999 788999999999999999999
Q ss_pred CCccc-HHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHccCCCcccccCCCCch---HHHH
Q 005912 81 ESYDR-VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTE-AIRHFRALQNYEGGTKVLHNEGNFGD---PLSL 155 (670)
Q Consensus 81 g~~~~-~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~-A~~lf~~M~~~g~~~~v~~~~g~~pd---tyn~ 155 (670)
|+++. ...|++++.+|++ -|+.|...+|..+|.-+++-++..+ +..+...+...-.+-.. .-+.|+ -|-+
T Consensus 287 g~F~~ar~aalqil~EmKe--iGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~f---kp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 287 GKFEDARKAALQILGEMKE--IGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTF---KPITPTDNKFFQS 361 (625)
T ss_pred cchHHHHHHHHHHHHHHHH--hCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcc---cCCCCchhHHHHH
Confidence 97754 4457899999999 9999999999999999999888754 44455555432111100 011122 5667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCCC--CCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHH
Q 005912 156 YLRALCREGRIIELLEALEAMAKDNQ--PVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKR 233 (670)
Q Consensus 156 LI~ay~k~G~~eeA~~vf~~M~~~gi--~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~ 233 (670)
-++.|.+..+.+-|.+|-.-+....- .+.|+ .-.++-|..+.... +.....+.-..
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~-~~~~fYyr~~~~li---------------------cq~es~~~~~~ 419 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPD-QHRNFYYRKFFDLI---------------------CQMESIDVTLK 419 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChH-HHHHHHHHHHHHHH---------------------HHHHHHHHHHH
Confidence 77888888999999988776654321 12222 11111222222222 33345666777
Q ss_pred HHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCC---c
Q 005912 234 WVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGP---E 310 (670)
Q Consensus 234 lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p---~ 310 (670)
|+..|.-.-+-|+. ++- ..++.+..-+|+++.--+++..|...|.. -+......++..+++....| .
T Consensus 420 ~Y~~lVP~~y~p~~--~~m----~~~lrA~~v~~~~e~ipRiw~D~~~~ght----~r~~l~eeil~~L~~~k~hp~tp~ 489 (625)
T KOG4422|consen 420 WYEDLVPSAYFPHS--QTM----IHLLRALDVANRLEVIPRIWKDSKEYGHT----FRSDLREEILMLLARDKLHPLTPE 489 (625)
T ss_pred HHHHhccceecCCc--hhH----HHHHHHHhhcCcchhHHHHHHHHHHhhhh----hhHHHHHHHHHHHhcCCCCCCChH
Confidence 88888765555665 433 23557888899999999999999888865 34444445555555443222 1
Q ss_pred ccccc-----cccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCChhhhhcC
Q 005912 311 QHVLK-----PKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGR 361 (670)
Q Consensus 311 ~~~L~-----~~~g~~~~A~~l~~~M~~~Gip~d~t~~~Ll~a~~~aG~~~eA~~~ 361 (670)
...+. |.+..++....--.+|.++.+|+ ...+.+.-.+.++|+.++|...
T Consensus 490 r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~-t~l~~ia~Ll~R~G~~qkA~e~ 544 (625)
T KOG4422|consen 490 REQLQVAFAKCAADIKEAYESQPIRQRAQDWPA-TSLNCIAILLLRAGRTQKAWEM 544 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCh-hHHHHHHHHHHHcchHHHHHHH
Confidence 11111 11112222222334566555543 3455566667899999988743
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.7e-12 Score=97.36 Aligned_cols=50 Identities=30% Similarity=0.472 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHH
Q 005912 28 ATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 79 (670)
Q Consensus 28 Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k 79 (670)
||+++||+||++|++.|++++|.++|++|. +.|+.||..|||+||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~--~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMK--KRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHH--HcCCCCCHHHHHHHHHHHcC
Confidence 899999999999999999999999999999 89999999999999999985
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.3e-08 Score=115.96 Aligned_cols=276 Identities=12% Similarity=0.084 Sum_probs=163.7
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHH
Q 005912 16 EIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGM 95 (670)
Q Consensus 16 ~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~e 95 (670)
.++..|...|+.||.+||.+||.-||..|+++.|- +|..|+ -....-+...|+.++.+..++|+ .+.+
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~--~ksLpv~e~vf~~lv~sh~~And---~Enp------ 78 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFME--IKSLPVREGVFRGLVASHKEAND---AENP------ 78 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhh--cccccccchhHHHHHhccccccc---ccCC------
Confidence 56778999999999999999999999999999999 999999 67777788999999999999994 3332
Q ss_pred hHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Q 005912 96 MVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEA 175 (670)
Q Consensus 96 M~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~ 175 (670)
-.|-..||+.|+.+|...|++.. |+...+ -.-.++..+...|.......++..
T Consensus 79 -------kep~aDtyt~Ll~ayr~hGDli~----fe~veq----------------dLe~i~~sfs~~Gvgs~e~~fl~k 131 (1088)
T KOG4318|consen 79 -------KEPLADTYTNLLKAYRIHGDLIL----FEVVEQ----------------DLESINQSFSDHGVGSPERWFLMK 131 (1088)
T ss_pred -------CCCchhHHHHHHHHHHhccchHH----HHHHHH----------------HHHHHHhhhhhhccCcHHHHHHhh
Confidence 15888899999999999999876 333332 011233333344443333333333
Q ss_pred HhhCCCCCCCchHH--HHhHHHHHHHHHHHHHHHHHHcC-CCHHHH-HHH-HHcCCcHHHHHHHHHHhccCCCCCCcccc
Q 005912 176 MAKDNQPVPPRAMI--LSRKYRTLVSSWIEPLQEEAELG-YEIDYI-ARY-ISEGGLTGERKRWVPRRGKTPLDPDAVGF 250 (670)
Q Consensus 176 M~~~gi~i~p~~~i--~~~ty~~ll~a~~~ll~~m~~~G-~~pd~i-~~~-~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ 250 (670)
+...+- .-|+.+. ......++-..+.+++..+.... ..|-.+ ..- ..-...+++.....+... + .|++ .
T Consensus 132 ~~c~p~-~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~--e-~~~s--~ 205 (1088)
T KOG4318|consen 132 IHCCPH-SLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLV--E-APTS--E 205 (1088)
T ss_pred cccCcc-cchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhh--c-CCCh--H
Confidence 222211 1222211 00001111111111111110000 001111 100 111112222221111111 1 4666 6
Q ss_pred hhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHH
Q 005912 251 IYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEE 330 (670)
Q Consensus 251 ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~ 330 (670)
+|...+ +.-.-+|+++.|..++.+|.++|+++ ..-.|.-++ +..+...-+..+.+-
T Consensus 206 ~l~a~l----~~alaag~~d~Ak~ll~emke~gfpi----r~HyFwpLl----------------~g~~~~q~~e~vlrg 261 (1088)
T KOG4318|consen 206 TLHAVL----KRALAAGDVDGAKNLLYEMKEKGFPI----RAHYFWPLL----------------LGINAAQVFEFVLRG 261 (1088)
T ss_pred HHHHHH----HHHHhcCchhhHHHHHHHHHHcCCCc----ccccchhhh----------------hcCccchHHHHHHHH
Confidence 666665 66678899999999999999999883 333333332 234445556778888
Q ss_pred HHhCCC-CCHHHHHHHHHHHHHhCChhhhhc
Q 005912 331 LDAQGL-PTDGTRNVLYQRVQKARRINRSRG 360 (670)
Q Consensus 331 M~~~Gi-p~d~t~~~Ll~a~~~aG~~~eA~~ 360 (670)
|.+.|+ |+..|+...+..+...|.+..+..
T Consensus 262 mqe~gv~p~seT~adyvip~l~N~~t~~~~e 292 (1088)
T KOG4318|consen 262 MQEKGVQPGSETQADYVIPQLSNGQTKYGEE 292 (1088)
T ss_pred HHHhcCCCCcchhHHHHHhhhcchhhhhccc
Confidence 889999 666888888887887777655543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=2e-06 Score=100.96 Aligned_cols=344 Identities=10% Similarity=-0.000 Sum_probs=211.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHc
Q 005912 2 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRA 80 (670)
Q Consensus 2 I~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~ 80 (670)
|..+.+.|++.+|+.+++......-.+.... ..|...+...|+++.|...|+++.. +.| +...|..+-..+.+.
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l-~~l~~~~l~~g~~~~A~~~l~~~l~----~~P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTAKNGRDLL-RRWVISPLASSQPDAVLQVVNKLLA----VNVCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhCCCchhHH-HHHhhhHhhcCCHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHHc
Confidence 4566788999999999888876543333333 4444555668999999999998873 233 356677778888888
Q ss_pred CCcccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHH
Q 005912 81 ESYDRVQDVAELLGMMVEDHKRLQPN-VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRA 159 (670)
Q Consensus 81 g~~~~~~eAl~lf~eM~~~~~gi~Pd-~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~a 159 (670)
| +.++|+..|.+... +.|+ ...+..+..++...|++++|...+..+......+.. .+..+ ..
T Consensus 124 g---~~~~Ai~~l~~Al~----l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~---------a~~~~-~~ 186 (656)
T PRK15174 124 K---QYATVADLAEQAWL----AFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD---------MIATC-LS 186 (656)
T ss_pred C---CHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH---------HHHHH-HH
Confidence 8 78888888988876 4454 566777888888999999999988877654332211 33333 34
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCCchHHH---HhHH--HHHHHHHHHHHHHHHHcCCC-HHH---HHHHHHcCCcHHH
Q 005912 160 LCREGRIIELLEALEAMAKDNQPVPPRAMIL---SRKY--RTLVSSWIEPLQEEAELGYE-IDY---IARYISEGGLTGE 230 (670)
Q Consensus 160 y~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~---~~ty--~~ll~a~~~ll~~m~~~G~~-pd~---i~~~~~~~g~~~~ 230 (670)
+.+.|++++|..+++.+.+... .++.... +..+ .+-...+...+.......-. +.. +...+...|..++
T Consensus 187 l~~~g~~~eA~~~~~~~l~~~~--~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~e 264 (656)
T PRK15174 187 FLNKSRLPEDHDLARALLPFFA--LERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSRE 264 (656)
T ss_pred HHHcCCHHHHHHHHHHHHhcCC--CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchh
Confidence 7788999999998888766542 1111110 0000 01122333444444433221 222 2234555666664
Q ss_pred ----HHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHH-HHHHHHHHc
Q 005912 231 ----RKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYV-RVEERLKKL 305 (670)
Q Consensus 231 ----a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~-~~l~~l~k~ 305 (670)
|...|+..... .|+. ...+.. +...+.+.|+.++|+..++...... |+..... .+-..+.
T Consensus 265 A~~~A~~~~~~Al~l--~P~~-~~a~~~----lg~~l~~~g~~~eA~~~l~~al~l~------P~~~~a~~~La~~l~-- 329 (656)
T PRK15174 265 AKLQAAEHWRHALQF--NSDN-VRIVTL----YADALIRTGQNEKAIPLLQQSLATH------PDLPYVRAMYARALR-- 329 (656)
T ss_pred hHHHHHHHHHHHHhh--CCCC-HHHHHH----HHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHH--
Confidence 78888887653 4653 233433 3478899999999999999988653 3322222 2222222
Q ss_pred cCCCcccccccccCCHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHhCChhhhhcCCCC----CCCc--chhhhhhhHH
Q 005912 306 IKGPEQHVLKPKAASKMVVSELKEELDAQGLPTD-GTRNVLYQRVQKARRINRSRGRPLW----VPPV--EEEEEEVDEE 378 (670)
Q Consensus 306 ~~~p~~~~L~~~~g~~~~A~~l~~~M~~~Gip~d-~t~~~Ll~a~~~aG~~~eA~~~~~~----~p~~--e~~~~~vdeE 378 (670)
..|++++|...++.+.... |.. ..+..+..++...|+.++|...+.. .|.. +++. +.-..
T Consensus 330 -----------~~G~~~eA~~~l~~al~~~-P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~-ea~~~ 396 (656)
T PRK15174 330 -----------QVGQYTAASDEFVQLAREK-GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFE-EGLLA 396 (656)
T ss_pred -----------HCCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHH-HHHHH
Confidence 4677999999999988754 333 3344456678899999999876432 1221 1111 22244
Q ss_pred HHHHHHhcccCCCcHhHHHH
Q 005912 379 VDELISRIKLEEGNTEFWKR 398 (670)
Q Consensus 379 ~~~li~~~~~~~~~~~~w~~ 398 (670)
+.+.+..++.. .....|..
T Consensus 397 ~~~~~~~~~~~-~~~~~W~~ 415 (656)
T PRK15174 397 LDGQISAVNLP-PERLDWAW 415 (656)
T ss_pred HHHHHHhcCCc-cchhhHHH
Confidence 56666666533 23336776
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.3e-05 Score=92.18 Aligned_cols=311 Identities=7% Similarity=-0.053 Sum_probs=191.3
Q ss_pred HhcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCc
Q 005912 6 CKAGDHSNALEIAYEMEAAG--RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESY 83 (670)
Q Consensus 6 ~k~G~~~~Al~lf~~M~~~G--v~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~ 83 (670)
.+..+++...-.|..-.++- -.-+..-...++..+.+.|++..|..+++... .....+ ...+..+..++...|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l--~~~p~~-~~~l~~l~~~~l~~g-- 90 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRV--LTAKNG-RDLLRRWVISPLASS-- 90 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHH--HhCCCc-hhHHHHHhhhHhhcC--
Confidence 34445554444444333220 11122233556778889999999999999987 333333 334444556666788
Q ss_pred ccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHH
Q 005912 84 DRVQDVAELLGMMVEDHKRLQPN-VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCR 162 (670)
Q Consensus 84 ~~~~eAl~lf~eM~~~~~gi~Pd-~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k 162 (670)
+.++|+..|+++.. +.|+ ...+..+-..+...|+++.|...+......... ... .+..+...|..
T Consensus 91 -~~~~A~~~l~~~l~----~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~-~~~--------a~~~la~~l~~ 156 (656)
T PRK15174 91 -QPDAVLQVVNKLLA----VNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSG-NSQ--------IFALHLRTLVL 156 (656)
T ss_pred -CHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHH--------HHHHHHHHHHH
Confidence 78999999999987 4564 466788888999999999999999999875322 111 78889999999
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCchHHHH--hHHHHHHHHHHHHHHHHHHcCC-CHH----HHHHHHHcCCcHHHHHHHH
Q 005912 163 EGRIIELLEALEAMAKDNQPVPPRAMILS--RKYRTLVSSWIEPLQEEAELGY-EID----YIARYISEGGLTGERKRWV 235 (670)
Q Consensus 163 ~G~~eeA~~vf~~M~~~gi~i~p~~~i~~--~ty~~ll~a~~~ll~~m~~~G~-~pd----~i~~~~~~~g~~~~a~~lf 235 (670)
.|++++|...++.+...... ++...... +...+-...+...+..+....- ... .....+...|..++|...|
T Consensus 157 ~g~~~eA~~~~~~~~~~~P~-~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~ 235 (656)
T PRK15174 157 MDKELQAISLARTQAQEVPP-RGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTG 235 (656)
T ss_pred CCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999988765421 22211000 0000111223334444333221 111 1123455667777888877
Q ss_pred HHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcc
Q 005912 236 PRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKY----HRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQ 311 (670)
Q Consensus 236 ~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~----A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~ 311 (670)
+..... .|+. ...+. .+...|.+.|+.++ |+..|+......-. +...+..+-..+.
T Consensus 236 ~~al~~--~p~~-~~~~~----~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-----~~~a~~~lg~~l~-------- 295 (656)
T PRK15174 236 ESALAR--GLDG-AALRR----SLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-----NVRIVTLYADALI-------- 295 (656)
T ss_pred HHHHhc--CCCC-HHHHH----HHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHH--------
Confidence 777653 2433 12222 23466777787775 67777776653211 2222222222222
Q ss_pred cccccccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCChhhhhcC
Q 005912 312 HVLKPKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGR 361 (670)
Q Consensus 312 ~~L~~~~g~~~~A~~l~~~M~~~Gip~d~t~~~Ll~a~~~aG~~~eA~~~ 361 (670)
..|++++|...+++.....-.+...+..+-..+...|++++|...
T Consensus 296 -----~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~ 340 (656)
T PRK15174 296 -----RTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDE 340 (656)
T ss_pred -----HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 567799999999998875532335677788889999999998753
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=0.00054 Score=85.83 Aligned_cols=319 Identities=12% Similarity=0.038 Sum_probs=199.6
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHH------------
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMA-TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETY------------ 70 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~P-d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~ty------------ 70 (670)
..-..++.+.|.+.+.++... .| |...+..++..+.+.|+.++|...+++..+ +.|+...+
T Consensus 37 ~~~~~~~~d~a~~~l~kl~~~--~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~----~~P~~~~~~~~~~~~~~~~~ 110 (1157)
T PRK11447 37 LGEATHREDLVRQSLYRLELI--DPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQ----LAPDSNAYRSSRTTMLLSTP 110 (1157)
T ss_pred HHHhhCChHHHHHHHHHHHcc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh----hCCCChHHHHHHHHHHhcCC
Confidence 445678999999999988753 44 677888899999999999999999999984 23443332
Q ss_pred -----HHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccc
Q 005912 71 -----NCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK-TYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLH 144 (670)
Q Consensus 71 -----n~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~-Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~ 144 (670)
-.+...+.+.| +.++|+..|..... . -.|+.. ............|+.++|.+.++.+.+..+..
T Consensus 111 ~~~~~l~~A~ll~~~g---~~~eA~~~~~~~l~--~-~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~---- 180 (1157)
T PRK11447 111 EGRQALQQARLLATTG---RTEEALASYDKLFN--G-APPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGN---- 180 (1157)
T ss_pred chhhHHHHHHHHHhCC---CHHHHHHHHHHHcc--C-CCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCC----
Confidence 22233577888 78999999999976 2 233321 11111222234699999999999998864221
Q ss_pred cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHH--------------hHHHHHH---------HHH
Q 005912 145 NEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILS--------------RKYRTLV---------SSW 201 (670)
Q Consensus 145 ~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~--------------~ty~~ll---------~a~ 201 (670)
+..+..+-..|.+.|+.++|...|+++...... ........ -.+...+ ..+
T Consensus 181 -----~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~-~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A 254 (1157)
T PRK11447 181 -----TGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAG-RDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAA 254 (1157)
T ss_pred -----HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHH
Confidence 126788999999999999999999998654310 00000000 0000000 111
Q ss_pred HHHHHHHHHcCCCHHHH----HHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHH
Q 005912 202 IEPLQEEAELGYEIDYI----ARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLR 277 (670)
Q Consensus 202 ~~ll~~m~~~G~~pd~i----~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~ 277 (670)
...+.........|... -..+...|..++|...|+..... .|+. ...+. .+...|.+.|+.++|+..|+
T Consensus 255 ~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~--~P~~-~~a~~----~Lg~~~~~~g~~~eA~~~l~ 327 (1157)
T PRK11447 255 RSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRA--NPKD-SEALG----ALGQAYSQQGDRARAVAQFE 327 (1157)
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCC-HHHHH----HHHHHHHHcCCHHHHHHHHH
Confidence 11222222222233332 13355678899999999887653 3532 13333 34478899999999999999
Q ss_pred HHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccc-----cccccCCHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHH
Q 005912 278 TLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHV-----LKPKAASKMVVSELKEELDAQGLPTD-GTRNVLYQRVQK 351 (670)
Q Consensus 278 ~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~-----L~~~~g~~~~A~~l~~~M~~~Gip~d-~t~~~Ll~a~~~ 351 (670)
+.....-.. +....+..++.... .|.. .....|+.++|...|++..... |.+ ..+..|-..+..
T Consensus 328 ~Al~~~p~~---~~~~~~~~ll~~~~------~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~ 397 (1157)
T PRK11447 328 KALALDPHS---SNRDKWESLLKVNR------YWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMA 397 (1157)
T ss_pred HHHHhCCCc---cchhHHHHHHHhhh------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 987654320 11122222211000 0000 0126788999999999998864 443 567778888999
Q ss_pred hCChhhhhcC
Q 005912 352 ARRINRSRGR 361 (670)
Q Consensus 352 aG~~~eA~~~ 361 (670)
.|+.++|...
T Consensus 398 ~g~~~eA~~~ 407 (1157)
T PRK11447 398 RKDYAAAERY 407 (1157)
T ss_pred CCCHHHHHHH
Confidence 9999998743
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.3e-08 Score=70.42 Aligned_cols=32 Identities=25% Similarity=0.439 Sum_probs=18.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHc
Q 005912 25 GRMATTFHFNHLLSCQATCGIPEVAFATFENM 56 (670)
Q Consensus 25 Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M 56 (670)
|+.||.+|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55555555555555555555555555555555
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=0.00038 Score=87.16 Aligned_cols=156 Identities=12% Similarity=0.082 Sum_probs=114.1
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHH---------
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVI--------- 74 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI--------- 74 (670)
.+...|++++|+..|++..+.. .-+...+..|-..|.+.|++++|...|++... ...-.++...|..++
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~-~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALA-LDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCccchhHHHHHHHhhhHHHHH
Confidence 4567899999999999988742 23678889999999999999999999999773 111122223343333
Q ss_pred ---HHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCc
Q 005912 75 ---QAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFG 150 (670)
Q Consensus 75 ---~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~p 150 (670)
..+.+.| +.++|...|.+... +.| +...+..+-..+...|++++|++.|+...+..... +
T Consensus 356 ~~g~~~~~~g---~~~eA~~~~~~Al~----~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~---------~ 419 (1157)
T PRK11447 356 QQGDAALKAN---NLAQAERLYQQARQ----VDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGN---------T 419 (1157)
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------H
Confidence 2456778 78999999999987 234 45677788899999999999999999998753221 1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005912 151 DPLSLYLRALCREGRIIELLEALEAMAK 178 (670)
Q Consensus 151 dtyn~LI~ay~k~G~~eeA~~vf~~M~~ 178 (670)
..+..+...|. .++.++|..+++.+..
T Consensus 420 ~a~~~L~~l~~-~~~~~~A~~~l~~l~~ 446 (1157)
T PRK11447 420 NAVRGLANLYR-QQSPEKALAFIASLSA 446 (1157)
T ss_pred HHHHHHHHHHH-hcCHHHHHHHHHhCCH
Confidence 15566666664 4577888888876543
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.4e-08 Score=69.01 Aligned_cols=34 Identities=38% Similarity=0.575 Sum_probs=24.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhH
Q 005912 61 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMV 97 (670)
Q Consensus 61 ~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~ 97 (670)
.|+.||.+|||+||++||++| ++++|+++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G---~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAG---RVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCC---CHHHHHHHHHhCc
Confidence 366777777777777777777 6777777777773
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.5e-05 Score=88.32 Aligned_cols=260 Identities=10% Similarity=0.005 Sum_probs=182.7
Q ss_pred cCChHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC-HHHHHHHHHHHHHcCCcc
Q 005912 8 AGDHSNALEIAYEMEAAG-RMA-TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD-TETYNCVIQAYTRAESYD 84 (670)
Q Consensus 8 ~G~~~~Al~lf~~M~~~G-v~P-d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd-~~tyn~LI~ay~k~g~~~ 84 (670)
.+++++|+..|+.....+ ..| +...|+.+-..|...|++++|...|++... +.|+ ..+|..+-..|...|
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~----l~P~~~~~~~~la~~~~~~g--- 379 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE----LDPRVTQSYIKRASMNLELG--- 379 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCcHHHHHHHHHHHHHCC---
Confidence 367899999999988765 334 456788888889999999999999999773 2455 568888889999999
Q ss_pred cHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHc
Q 005912 85 RVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCRE 163 (670)
Q Consensus 85 ~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~ 163 (670)
+.++|+..|.+..+ . .| +..+|..+-..|...|++++|...|......... ... .|..+-..|.+.
T Consensus 380 ~~~eA~~~~~~al~--~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~--------~~~~la~~~~~~ 446 (615)
T TIGR00990 380 DPDKAEEDFDKALK--L--NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIF--------SHIQLGVTQYKE 446 (615)
T ss_pred CHHHHHHHHHHHHH--h--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHH--------HHHHHHHHHHHC
Confidence 78899999999876 2 34 4678888999999999999999999998875322 111 677788889999
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCCC
Q 005912 164 GRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPL 243 (670)
Q Consensus 164 G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi 243 (670)
|++++|...|+...+.. |+... .++.+... +...|..++|...|+.....
T Consensus 447 g~~~eA~~~~~~al~~~----P~~~~---~~~~lg~~---------------------~~~~g~~~~A~~~~~~Al~l-- 496 (615)
T TIGR00990 447 GSIASSMATFRRCKKNF----PEAPD---VYNYYGEL---------------------LLDQNKFDEAIEKFDTAIEL-- 496 (615)
T ss_pred CCHHHHHHHHHHHHHhC----CCChH---HHHHHHHH---------------------HHHccCHHHHHHHHHHHHhc--
Confidence 99999999999987653 22211 13333222 35567889999999886543
Q ss_pred CCCcccchhh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCH
Q 005912 244 DPDAVGFIYS--NPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASK 321 (670)
Q Consensus 244 ~Pd~d~~ty~--~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~ 321 (670)
.|+......+ .++......|...|++++|..++.+....... +...+..+-..+. +.|+.
T Consensus 497 ~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~-----~~~a~~~la~~~~-------------~~g~~ 558 (615)
T TIGR00990 497 EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE-----CDIAVATMAQLLL-------------QQGDV 558 (615)
T ss_pred CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHH-------------HccCH
Confidence 2322111111 12221223344469999999999987665322 2223333333333 45679
Q ss_pred HHHHHHHHHHHhCC
Q 005912 322 MVVSELKEELDAQG 335 (670)
Q Consensus 322 ~~A~~l~~~M~~~G 335 (670)
++|..+|++..+..
T Consensus 559 ~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 559 DEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998876653
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.0011 Score=79.35 Aligned_cols=306 Identities=11% Similarity=0.032 Sum_probs=182.2
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHH---HHHHH
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATT--FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCV---IQAYT 78 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~--~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~L---I~ay~ 78 (670)
...+.|++..|++.|++..+. .|+. ..+ .++..+...|+.++|..++++.. .|+...|..+ ...|.
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~------~p~n~~~~~llalA~ly~ 113 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ------SSMNISSRGLASAARAYR 113 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc------cCCCCCHHHHHHHHHHHH
Confidence 357899999999999998864 4553 234 89999999999999999999987 5544444333 44677
Q ss_pred HcCCcccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHH
Q 005912 79 RAESYDRVQDVAELLGMMVEDHKRLQPN-VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYL 157 (670)
Q Consensus 79 k~g~~~~~~eAl~lf~eM~~~~~gi~Pd-~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI 157 (670)
..| +.++|+++|+++.+ ..|+ ...+..++..|...++.++|++.+..+...... .. .|-.++
T Consensus 114 ~~g---dyd~Aiely~kaL~----~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~--~~--------~~l~la 176 (822)
T PRK14574 114 NEK---RWDQALALWQSSLK----KDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPT--VQ--------NYMTLS 176 (822)
T ss_pred HcC---CHHHHHHHHHHHHh----hCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc--hH--------HHHHHH
Confidence 778 78899999999987 3443 566678889999999999999999998775322 11 443444
Q ss_pred HHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHH------HHHHHHHcC--CCH--------HHHHHH
Q 005912 158 RALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIE------PLQEEAELG--YEI--------DYIARY 221 (670)
Q Consensus 158 ~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~------ll~~m~~~G--~~p--------d~i~~~ 221 (670)
..+...++..+|+..++++.+.+- -.++. +..++..+.. .++.+.+.. +.+ +.+...
T Consensus 177 yL~~~~~~~~~AL~~~ekll~~~P-~n~e~------~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~ 249 (822)
T PRK14574 177 YLNRATDRNYDALQASSEAVRLAP-TSEEV------LKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQ 249 (822)
T ss_pred HHHHhcchHHHHHHHHHHHHHhCC-CCHHH------HHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHH
Confidence 444445666669999999998862 12222 2233322221 111121111 111 111111
Q ss_pred HH--------cCCc---HHHHHHHHHHhcc-CCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCC
Q 005912 222 IS--------EGGL---TGERKRWVPRRGK-TPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGD 289 (670)
Q Consensus 222 ~~--------~~g~---~~~a~~lf~~m~~-~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~ 289 (670)
.. .... .+.+..-++.+.. .+-.|.....--.+.++ .+-++...|+..++++.|+.|...+.++
T Consensus 250 vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~D-rl~aL~~r~r~~~vi~~y~~l~~~~~~~--- 325 (822)
T PRK14574 250 VRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARID-RLGALLVRHQTADLIKEYEAMEAEGYKM--- 325 (822)
T ss_pred HhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHH-HHHHHHHhhhHHHHHHHHHHhhhcCCCC---
Confidence 11 1111 2222222333322 22223321111223333 3356677788888888888888877652
Q ss_pred CCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHHhCC-----CCCH-HHHHHHHHHHHHhCChhhhhc
Q 005912 290 VSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQG-----LPTD-GTRNVLYQRVQKARRINRSRG 360 (670)
Q Consensus 290 ~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~G-----ip~d-~t~~~Ll~a~~~aG~~~eA~~ 360 (670)
|.. ....+-+.+... +.-++|..+++.....- .|.+ .....|..++.-.+++++|..
T Consensus 326 P~y-~~~a~adayl~~-------------~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~ 388 (822)
T PRK14574 326 PDY-ARRWAASAYIDR-------------RLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQ 388 (822)
T ss_pred CHH-HHHHHHHHHHhc-------------CCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHH
Confidence 332 333333444332 33567777888774432 1223 335678888888888877764
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.0013 Score=78.77 Aligned_cols=155 Identities=9% Similarity=0.042 Sum_probs=116.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
......|+.++|++++...... -..+...+..+-..|.+.|++++|..+|++... . -..+...+..+...+...|
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~-~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~--~-~P~~~~a~~~la~~l~~~g- 97 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVH-MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALS--L-EPQNDDYQRGLILTLADAG- 97 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h-CCCCHHHHHHHHHHHHHCC-
Confidence 4556789999999999988762 234566789999999999999999999999652 1 1334667788888999999
Q ss_pred cccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCR 162 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k 162 (670)
+.++|+..+.+... . .|+...+..+-.++...|+.++|...++.+.+..+... ..+..+...+.+
T Consensus 98 --~~~eA~~~l~~~l~--~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~---------~~~~~la~~l~~ 162 (765)
T PRK10049 98 --QYDEALVKAKQLVS--G--APDKANLLALAYVYKRAGRHWDELRAMTQALPRAPQTQ---------QYPTEYVQALRN 162 (765)
T ss_pred --CHHHHHHHHHHHHH--h--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHH
Confidence 78899999999876 2 45433377888888999999999999999887543221 145566777777
Q ss_pred cCCHHHHHHHHHHHh
Q 005912 163 EGRIIELLEALEAMA 177 (670)
Q Consensus 163 ~G~~eeA~~vf~~M~ 177 (670)
.|..++|+..++...
T Consensus 163 ~~~~e~Al~~l~~~~ 177 (765)
T PRK10049 163 NRLSAPALGAIDDAN 177 (765)
T ss_pred CCChHHHHHHHHhCC
Confidence 788777777776443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.6e-05 Score=87.67 Aligned_cols=231 Identities=14% Similarity=0.074 Sum_probs=169.4
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMAT-TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd-~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
.|...|++++|+..|++..+. .|+ ..+|..+-..|...|++++|...|++... .. ..+...|..+-..|...|
T Consensus 340 ~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~-p~~~~~~~~lg~~~~~~g- 413 (615)
T TIGR00990 340 FKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALK--LN-SEDPDIYYHRAQLHFIKG- 413 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hC-CCCHHHHHHHHHHHHHcC-
Confidence 456789999999999998764 454 56888888899999999999999999873 21 335788999999999999
Q ss_pred cccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALC 161 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~ 161 (670)
+.++|+..|.+... +.| +...|..+-.++.+.|++++|...|+...+... ..|+.|+.+-..|.
T Consensus 414 --~~~~A~~~~~kal~----l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P---------~~~~~~~~lg~~~~ 478 (615)
T TIGR00990 414 --EFAQAGKDYQKSID----LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP---------EAPDVYNYYGELLL 478 (615)
T ss_pred --CHHHHHHHHHHHHH----cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---------CChHHHHHHHHHHH
Confidence 78899999999876 345 467777888899999999999999999876421 12338899999999
Q ss_pred HcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccC
Q 005912 162 REGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKT 241 (670)
Q Consensus 162 k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~ 241 (670)
..|++++|...|+...+..-...+... ....++..+ ..++...|..++|..+++.....
T Consensus 479 ~~g~~~~A~~~~~~Al~l~p~~~~~~~----~~~~l~~~a-----------------~~~~~~~~~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 479 DQNKFDEAIEKFDTAIELEKETKPMYM----NVLPLINKA-----------------LALFQWKQDFIEAENLCEKALII 537 (615)
T ss_pred HccCHHHHHHHHHHHHhcCCccccccc----cHHHHHHHH-----------------HHHHHHhhhHHHHHHHHHHHHhc
Confidence 999999999999987765421111110 011111111 01123346788888888876543
Q ss_pred CCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005912 242 PLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEG 283 (670)
Q Consensus 242 gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~g 283 (670)
.|+. ...+.. +...+.+.|++++|+.+|+......
T Consensus 538 --~p~~-~~a~~~----la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 538 --DPEC-DIAVAT----MAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred --CCCc-HHHHHH----HHHHHHHccCHHHHHHHHHHHHHHh
Confidence 3543 123433 4588899999999999999886653
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00013 Score=72.00 Aligned_cols=159 Identities=13% Similarity=0.027 Sum_probs=121.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
..|...|++++|...|++..... ..+...+..+...|...|++++|...|++.. ... ..+...|+.+...|...|
T Consensus 39 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al--~~~-~~~~~~~~~~~~~~~~~g- 113 (234)
T TIGR02521 39 LGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRAL--TLN-PNNGDVLNNYGTFLCQQG- 113 (234)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hhC-CCCHHHHHHHHHHHHHcc-
Confidence 45778899999999998887642 3346777888888999999999999998876 222 345667888888888888
Q ss_pred cccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALC 161 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~ 161 (670)
+.++|...|.+... ....| ....+..+-.++...|++++|.+.|....+.... .+..+..+...|.
T Consensus 114 --~~~~A~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~~la~~~~ 180 (234)
T TIGR02521 114 --KYEQAMQQFEQAIE--DPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ---------RPESLLELAELYY 180 (234)
T ss_pred --cHHHHHHHHHHHHh--ccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---------ChHHHHHHHHHHH
Confidence 78889999988876 32222 3456667778888999999999999888764321 1226778888899
Q ss_pred HcCCHHHHHHHHHHHhhC
Q 005912 162 REGRIIELLEALEAMAKD 179 (670)
Q Consensus 162 k~G~~eeA~~vf~~M~~~ 179 (670)
+.|++++|...|++....
T Consensus 181 ~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 181 LRGQYKDARAYLERYQQT 198 (234)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999988765
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00037 Score=68.63 Aligned_cols=202 Identities=10% Similarity=-0.020 Sum_probs=146.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHH
Q 005912 29 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK 108 (670)
Q Consensus 29 d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~ 108 (670)
....+..+...|...|++++|...|++... .. ..+...|..+...|...| +.++|.+.|.+... .. ..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~--~~-p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~--~~-~~~~~ 100 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALE--HD-PDDYLAYLALALYYQQLG---ELEKAEDSFRRALT--LN-PNNGD 100 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hC-cccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHh--hC-CCCHH
Confidence 456778888999999999999999999872 21 334678888999999999 78899999998876 22 23556
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchH
Q 005912 109 TYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAM 188 (670)
Q Consensus 109 Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~ 188 (670)
.+..+...+...|++++|.+.|.........+ ..+..+..+-..|.+.|++++|...|....+.. |+..
T Consensus 101 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~ 169 (234)
T TIGR02521 101 VLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYP-------QPARSLENAGLCALKAGDFDKAEKYLTRALQID----PQRP 169 (234)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhccccc-------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----cCCh
Confidence 78888889999999999999999988642111 112267778888999999999999999987754 2211
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCC
Q 005912 189 ILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDG 268 (670)
Q Consensus 189 i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~ 268 (670)
. .+..+. ..+...|..++|..+++..... .|+. ...+.. ....+...|+
T Consensus 170 ~---~~~~la---------------------~~~~~~~~~~~A~~~~~~~~~~--~~~~-~~~~~~----~~~~~~~~~~ 218 (234)
T TIGR02521 170 E---SLLELA---------------------ELYYLRGQYKDARAYLERYQQT--YNQT-AESLWL----GIRIARALGD 218 (234)
T ss_pred H---HHHHHH---------------------HHHHHcCCHHHHHHHHHHHHHh--CCCC-HHHHHH----HHHHHHHHhh
Confidence 0 122222 2235667889999999887664 2322 133322 3367788999
Q ss_pred HHHHHHHHHHHHH
Q 005912 269 KKYHRKLLRTLQN 281 (670)
Q Consensus 269 ~e~A~~Lf~~M~~ 281 (670)
.+.|..+++.+..
T Consensus 219 ~~~a~~~~~~~~~ 231 (234)
T TIGR02521 219 VAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHh
Confidence 9999998887754
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0084 Score=72.03 Aligned_cols=324 Identities=9% Similarity=-0.056 Sum_probs=201.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
..+.+.|++++|..+|++..+. -..+...+..+...+...|++++|...+++... . ...+.. |..+-..+...|
T Consensus 57 ~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~--~-~P~~~~-~~~la~~l~~~g- 130 (765)
T PRK10049 57 VAYRNLKQWQNSLTLWQKALSL-EPQNDDYQRGLILTLADAGQYDEALVKAKQLVS--G-APDKAN-LLALAYVYKRAG- 130 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--h-CCCCHH-HHHHHHHHHHCC-
Confidence 3577889999999999997764 233466677888899999999999999999873 2 123444 888888888999
Q ss_pred cccHHHHHHHHHHhHhccCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHc------------------cCCCcc-
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQPNV-KTYALLVECFTKYCAVTEAIRHFRALQNY------------------EGGTKV- 142 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~Pd~-~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~------------------g~~~~v- 142 (670)
+.++|+..|.+..+ +.|+. ..+..+..++...+..+.|.+.++..... ......
T Consensus 131 --~~~~Al~~l~~al~----~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~ 204 (765)
T PRK10049 131 --RHWDELRAMTQALP----RAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRS 204 (765)
T ss_pred --CHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccC
Confidence 88999999999977 35643 44455666677777777666555532210 000000
Q ss_pred ------------------cccCCCCch-------HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchH-H---HHhH
Q 005912 143 ------------------LHNEGNFGD-------PLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAM-I---LSRK 193 (670)
Q Consensus 143 ------------------~~~~g~~pd-------tyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~-i---~~~t 193 (670)
.......|+ .....+.++...|+.++|...|+.+.+.+.+ .|+.. . ..+.
T Consensus 205 ~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~-~P~~a~~~la~~yl 283 (765)
T PRK10049 205 EKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQI-IPPWAQRWVASAYL 283 (765)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC-CCHHHHHHHHHHHH
Confidence 000011111 1111133456779999999999999888642 24321 1 1122
Q ss_pred HHHHHHHHHHHHHHHHHcCCC-----HHH---HHHHHHcCCcHHHHHHHHHHhccCC-----------CCCCcccchhhh
Q 005912 194 YRTLVSSWIEPLQEEAELGYE-----IDY---IARYISEGGLTGERKRWVPRRGKTP-----------LDPDAVGFIYSN 254 (670)
Q Consensus 194 y~~ll~a~~~ll~~m~~~G~~-----pd~---i~~~~~~~g~~~~a~~lf~~m~~~g-----------i~Pd~d~~ty~~ 254 (670)
..+-...+...+.......-. +.. +...+...|..++|..+++.+.... -.|+.+ +-.
T Consensus 284 ~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~---~~~ 360 (765)
T PRK10049 284 KLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDD---WLQ 360 (765)
T ss_pred hcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCch---HHH
Confidence 222234455566655443311 121 2234567889999999999886531 112211 111
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHHhC
Q 005912 255 PMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQ 334 (670)
Q Consensus 255 LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~ 334 (670)
........+...|+.++|+.+|+++....-. +...+..+-..+. ..|..++|...+++....
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-----n~~l~~~lA~l~~-------------~~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAYNAPG-----NQGLRIDYASVLQ-------------ARGWPRAAENELKKAEVL 422 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHH-------------hcCCHHHHHHHHHHHHhh
Confidence 1112446778999999999999998765322 3332222222332 456689999999977764
Q ss_pred CCCCH-HHHHHHHHHHHHhCChhhhhcC
Q 005912 335 GLPTD-GTRNVLYQRVQKARRINRSRGR 361 (670)
Q Consensus 335 Gip~d-~t~~~Ll~a~~~aG~~~eA~~~ 361 (670)
- |++ ..+..+...+...|++++|...
T Consensus 423 ~-Pd~~~l~~~~a~~al~~~~~~~A~~~ 449 (765)
T PRK10049 423 E-PRNINLEVEQAWTALDLQEWRQMDVL 449 (765)
T ss_pred C-CCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 4 655 5666666678889999988754
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.1e-05 Score=84.61 Aligned_cols=256 Identities=13% Similarity=0.059 Sum_probs=85.3
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLS-CQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~-~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
.+.+.|++++|++++..-....-.|+...|-.++. .+-..++.+.|...++++. ..+-. +...|..++.- ...+
T Consensus 17 ~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~--~~~~~-~~~~~~~l~~l-~~~~- 91 (280)
T PF13429_consen 17 LLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLL--ASDKA-NPQDYERLIQL-LQDG- 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccc-ccccccccccc-cccc-
Confidence 46688999999999966554433455555555444 4555789999999999998 33322 55567777777 5777
Q ss_pred cccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCR 162 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k 162 (670)
+.++|++++....+ . .++...+..++..+.+.++.+.+.++++.+......+ ..+..|..+-..|.+
T Consensus 92 --~~~~A~~~~~~~~~--~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~-------~~~~~~~~~a~~~~~ 158 (280)
T PF13429_consen 92 --DPEEALKLAEKAYE--R--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAP-------DSARFWLALAEIYEQ 158 (280)
T ss_dssp --------------------------------H-HHHTT-HHHHHHHHHHHHH-T----------T-HHHHHHHHHHHHH
T ss_pred --cccccccccccccc--c--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCC-------CCHHHHHHHHHHHHH
Confidence 67889988887655 2 3566777888999999999999999999987532111 112277888888999
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCC
Q 005912 163 EGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTP 242 (670)
Q Consensus 163 ~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~g 242 (670)
.|+.++|.++|+...+... .+.-+ ...++..+ ...|..+++..++.......
T Consensus 159 ~G~~~~A~~~~~~al~~~P---~~~~~----~~~l~~~l---------------------i~~~~~~~~~~~l~~~~~~~ 210 (280)
T PF13429_consen 159 LGDPDKALRDYRKALELDP---DDPDA----RNALAWLL---------------------IDMGDYDEAREALKRLLKAA 210 (280)
T ss_dssp CCHHHHHHHHHHHHHHH-T---T-HHH----HHHHHHHH---------------------CTTCHHHHHHHHHHHHHHH-
T ss_pred cCCHHHHHHHHHHHHHcCC---CCHHH----HHHHHHHH---------------------HHCCChHHHHHHHHHHHHHC
Confidence 9999999999999888752 22211 23333322 45566777666666654432
Q ss_pred CCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHH
Q 005912 243 LDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKM 322 (670)
Q Consensus 243 i~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~ 322 (670)
..++ ..+. .+..+|...|+.++|+.+|+......-. +.......-+++. +.|+.+
T Consensus 211 -~~~~--~~~~----~la~~~~~lg~~~~Al~~~~~~~~~~p~-----d~~~~~~~a~~l~-------------~~g~~~ 265 (280)
T PF13429_consen 211 -PDDP--DLWD----ALAAAYLQLGRYEEALEYLEKALKLNPD-----DPLWLLAYADALE-------------QAGRKD 265 (280)
T ss_dssp -HTSC--CHCH----HHHHHHHHHT-HHHHHHHHHHHHHHSTT------HHHHHHHHHHHT-------------------
T ss_pred -cCHH--HHHH----HHHHHhcccccccccccccccccccccc-----ccccccccccccc-------------cccccc
Confidence 2222 3332 3447778888889999988887764322 3333333334443 445566
Q ss_pred HHHHHHHH
Q 005912 323 VVSELKEE 330 (670)
Q Consensus 323 ~A~~l~~~ 330 (670)
+|..++.+
T Consensus 266 ~A~~~~~~ 273 (280)
T PF13429_consen 266 EALRLRRQ 273 (280)
T ss_dssp --------
T ss_pred cccccccc
Confidence 66666554
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0021 Score=71.08 Aligned_cols=283 Identities=9% Similarity=-0.018 Sum_probs=187.3
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHH--HHHHHHHHcCCcc
Q 005912 8 AGDHSNALEIAYEMEAAGRMATTFHFNHL-LSCQATCGIPEVAFATFENMEYGEDYMKPDTETYN--CVIQAYTRAESYD 84 (670)
Q Consensus 8 ~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~L-I~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn--~LI~ay~k~g~~~ 84 (670)
.|+++.|.+.+..-.... ++...+-.+ .....+.|+++.|...|.++.+ ..|+...+- ....-+...|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~----~~~~~~~~~~l~~a~l~l~~g--- 167 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAE----LADNDQLPVEITRVRIQLARN--- 167 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCCcchHHHHHHHHHHHHHCC---
Confidence 599999998887765542 222333233 3334788999999999999873 356654443 2245677888
Q ss_pred cHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHc
Q 005912 85 RVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCRE 163 (670)
Q Consensus 85 ~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~ 163 (670)
+.+.|...++...+ ..| +...+..+...|.+.|+++.|.+++..+.+....+.-.. ......+|..++....+.
T Consensus 168 ~~~~Al~~l~~~~~----~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~-~~l~~~a~~~l~~~~~~~ 242 (398)
T PRK10747 168 ENHAARHGVDKLLE----VAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHR-AMLEQQAWIGLMDQAMAD 242 (398)
T ss_pred CHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHH-HHHHHHHHHHHHHHHHHh
Confidence 78899999999976 345 467788999999999999999999999998653211000 000000444555555555
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCCC
Q 005912 164 GRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPL 243 (670)
Q Consensus 164 G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi 243 (670)
...+....+++.+.+.- +-.|.. ...+. ..+...|..++|........+.
T Consensus 243 ~~~~~l~~~w~~lp~~~-~~~~~~------~~~~A---------------------~~l~~~g~~~~A~~~L~~~l~~-- 292 (398)
T PRK10747 243 QGSEGLKRWWKNQSRKT-RHQVAL------QVAMA---------------------EHLIECDDHDTAQQIILDGLKR-- 292 (398)
T ss_pred cCHHHHHHHHHhCCHHH-hCCHHH------HHHHH---------------------HHHHHCCCHHHHHHHHHHHHhc--
Confidence 56666777777664432 101111 11122 2346778889999888877663
Q ss_pred CCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHHH
Q 005912 244 DPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMV 323 (670)
Q Consensus 244 ~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~ 323 (670)
.|++ - ++ ++.+.+..++.+++++.++...+.. |+...+..++-.+. ...+.+.+
T Consensus 293 ~~~~--~----l~--~l~~~l~~~~~~~al~~~e~~lk~~------P~~~~l~l~lgrl~------------~~~~~~~~ 346 (398)
T PRK10747 293 QYDE--R----LV--LLIPRLKTNNPEQLEKVLRQQIKQH------GDTPLLWSTLGQLL------------MKHGEWQE 346 (398)
T ss_pred CCCH--H----HH--HHHhhccCCChHHHHHHHHHHHhhC------CCCHHHHHHHHHHH------------HHCCCHHH
Confidence 2333 1 11 2355567799999999999887654 33344443332222 25678999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHhCChhhhhcC
Q 005912 324 VSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGR 361 (670)
Q Consensus 324 A~~l~~~M~~~Gip~d~t~~~Ll~a~~~aG~~~eA~~~ 361 (670)
|.+.|+...+.. |+..+|..|-..+.+.|+.++|..+
T Consensus 347 A~~~le~al~~~-P~~~~~~~La~~~~~~g~~~~A~~~ 383 (398)
T PRK10747 347 ASLAFRAALKQR-PDAYDYAWLADALDRLHKPEEAAAM 383 (398)
T ss_pred HHHHHHHHHhcC-CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999998754 7778888899999999999988643
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0065 Score=72.87 Aligned_cols=318 Identities=11% Similarity=0.023 Sum_probs=203.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcC
Q 005912 2 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 81 (670)
Q Consensus 2 I~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g 81 (670)
+..+...|+.++|+.++++... .-..+....-++...|...|++++|..+|+++.. .. .-|...+..++..|.+.+
T Consensus 75 l~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~--~d-P~n~~~l~gLa~~y~~~~ 150 (822)
T PRK14574 75 LQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYRNEKRWDQALALWQSSLK--KD-PTNPDLISGMIMTQADAG 150 (822)
T ss_pred HHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hC-CCCHHHHHHHHHHHhhcC
Confidence 5667888999999999998872 1111233333335578888999999999999983 11 223566678888899998
Q ss_pred CcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHH
Q 005912 82 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALC 161 (670)
Q Consensus 82 ~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~ 161 (670)
+.++|++.+..... ..|+...|-.++..+...++..+|.+.++++....+.. ++.+..++.++.
T Consensus 151 ---q~~eAl~~l~~l~~----~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n---------~e~~~~~~~~l~ 214 (822)
T PRK14574 151 ---RGGVVLKQATELAE----RDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTS---------EEVLKNHLEILQ 214 (822)
T ss_pred ---CHHHHHHHHHHhcc----cCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHH
Confidence 89999999999865 56777777555444445666666999999998864221 126788899999
Q ss_pred HcCCHHHHHHHHHHHhhCCCCCCCchH--HHHh-----------------HHHHHHHHHHHHHHHHH-HcCCCH----HH
Q 005912 162 REGRIIELLEALEAMAKDNQPVPPRAM--ILSR-----------------KYRTLVSSWIEPLQEEA-ELGYEI----DY 217 (670)
Q Consensus 162 k~G~~eeA~~vf~~M~~~gi~i~p~~~--i~~~-----------------ty~~ll~a~~~ll~~m~-~~G~~p----d~ 217 (670)
+.|-...|.++...-..-- ++... +-.. .-...++.++..+..+. ..+-.| ..
T Consensus 215 ~~~~~~~a~~l~~~~p~~f---~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~ 291 (822)
T PRK14574 215 RNRIVEPALRLAKENPNLV---SAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADY 291 (822)
T ss_pred HcCCcHHHHHHHHhCcccc---CHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHH
Confidence 9999999988776532110 11110 0000 00012222222222222 222223 21
Q ss_pred ----H--HHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCC-C
Q 005912 218 ----I--ARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGD-V 290 (670)
Q Consensus 218 ----i--~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~-~ 290 (670)
+ ..++...|...++..-++.+...+..... |+ ...+.++|...+++++|+.+|.......-..... +
T Consensus 292 ~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~--y~----~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~ 365 (822)
T PRK14574 292 QRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPD--YA----RRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSD 365 (822)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCH--HH----HHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCc
Confidence 1 24567778899999999999877643222 32 2457799999999999999999986543221111 1
Q ss_pred CHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHHh--------CC----CCCH---HHHHHHHHHHHHhCCh
Q 005912 291 SESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDA--------QG----LPTD---GTRNVLYQRVQKARRI 355 (670)
Q Consensus 291 ~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~--------~G----ip~d---~t~~~Ll~a~~~aG~~ 355 (670)
.......+.-++. .+++.++|..+.+.+.. .| .|++ ..+..+...+...|++
T Consensus 366 ~~~~~~~L~yA~l-------------d~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl 432 (822)
T PRK14574 366 DLLDADDLYYSLN-------------ESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDL 432 (822)
T ss_pred chHHHHHHHHHHH-------------hcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCH
Confidence 2222233333333 46779999999999987 12 2444 3445567788899999
Q ss_pred hhhhcC
Q 005912 356 NRSRGR 361 (670)
Q Consensus 356 ~eA~~~ 361 (670)
.+|...
T Consensus 433 ~~Ae~~ 438 (822)
T PRK14574 433 PTAQKK 438 (822)
T ss_pred HHHHHH
Confidence 988753
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.6e-05 Score=80.62 Aligned_cols=151 Identities=21% Similarity=0.239 Sum_probs=36.8
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHH
Q 005912 8 AGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQ 87 (670)
Q Consensus 8 ~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~ 87 (670)
.++++.|+..++++...+-. +...|..|+.. ...+++++|..++...- +. .++...+..++..+.+.+ +.+
T Consensus 57 ~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~--~~--~~~~~~l~~~l~~~~~~~---~~~ 127 (280)
T PF13429_consen 57 LGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAY--ER--DGDPRYLLSALQLYYRLG---DYD 127 (280)
T ss_dssp -------------------------------------------------------------------H-HHHTT----HH
T ss_pred cccccccccccccccccccc-ccccccccccc-ccccccccccccccccc--cc--ccccchhhHHHHHHHHHh---HHH
Confidence 34455555555555443322 33334444444 34455555555544432 11 233444444555555555 334
Q ss_pred HHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHH
Q 005912 88 DVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRII 167 (670)
Q Consensus 88 eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~e 167 (670)
++..++...... ....++...|..+-..+.+.|+.++|.++++...+..+.. ++..+.++..+...|+.+
T Consensus 128 ~~~~~l~~~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~---------~~~~~~l~~~li~~~~~~ 197 (280)
T PF13429_consen 128 EAEELLEKLEEL-PAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDD---------PDARNALAWLLIDMGDYD 197 (280)
T ss_dssp HHHHHHHHHHH--T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT----------HHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---------HHHHHHHHHHHHHCCChH
Confidence 444444443321 2233344444444455555555555555555544432211 113444455555555555
Q ss_pred HHHHHHHHHh
Q 005912 168 ELLEALEAMA 177 (670)
Q Consensus 168 eA~~vf~~M~ 177 (670)
++..++....
T Consensus 198 ~~~~~l~~~~ 207 (280)
T PF13429_consen 198 EAREALKRLL 207 (280)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5444444443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0018 Score=71.54 Aligned_cols=247 Identities=11% Similarity=-0.020 Sum_probs=167.0
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCc
Q 005912 6 CKAGDHSNALEIAYEMEAAGRMATTFHFN--HLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESY 83 (670)
Q Consensus 6 ~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn--~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~ 83 (670)
.+.|+++.|...|.++.+ ..|+...+- .....+...|+++.|...++++.. .. .-+...+..+...|.+.|
T Consensus 129 ~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~--~~-P~~~~al~ll~~~~~~~g-- 201 (398)
T PRK10747 129 QQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQLARNENHAARHGVDKLLE--VA-PRHPEVLRLAEQAYIRTG-- 201 (398)
T ss_pred HHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cC-CCCHHHHHHHHHHHHHHH--
Confidence 678999999999999976 456654443 335688899999999999999883 22 346788999999999999
Q ss_pred ccHHHHHHHHHHhHhccCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHH
Q 005912 84 DRVQDVAELLGMMVEDHKRLQPNV-------KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLY 156 (670)
Q Consensus 84 ~~~~eAl~lf~eM~~~~~gi~Pd~-------~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~L 156 (670)
++++|.+++..+.+ .+..++. .+|..++....+....+...++++.+-+. .-..|.....+
T Consensus 202 -dw~~a~~~l~~l~k--~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~---------~~~~~~~~~~~ 269 (398)
T PRK10747 202 -AWSSLLDILPSMAK--AHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK---------TRHQVALQVAM 269 (398)
T ss_pred -hHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH---------HhCCHHHHHHH
Confidence 89999999999998 4444322 23444444444444455555555544321 11123378889
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCCCCCCchH-HHHhHHHHHHHHHHHHHHHHH-HcCCCHHHH---HHHHHcCCcHHHH
Q 005912 157 LRALCREGRIIELLEALEAMAKDNQPVPPRAM-ILSRKYRTLVSSWIEPLQEEA-ELGYEIDYI---ARYISEGGLTGER 231 (670)
Q Consensus 157 I~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~-i~~~ty~~ll~a~~~ll~~m~-~~G~~pd~i---~~~~~~~g~~~~a 231 (670)
...+.+.|+.++|..+++...+..- .+..+ +.+.....-.......++... +..-.|... -..|...+..++|
T Consensus 270 A~~l~~~g~~~~A~~~L~~~l~~~~--~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A 347 (398)
T PRK10747 270 AEHLIECDDHDTAQQIILDGLKRQY--DERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEA 347 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCC--CHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999998877431 23221 111111111233334444333 333345533 3678899999999
Q ss_pred HHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005912 232 KRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQN 281 (670)
Q Consensus 232 ~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~ 281 (670)
+..|+..... .|+. .+|.. +...+.+.|+.++|.+++++-..
T Consensus 348 ~~~le~al~~--~P~~--~~~~~----La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 348 SLAFRAALKQ--RPDA--YDYAW----LADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHhc--CCCH--HHHHH----HHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999998764 4776 54432 44888999999999999986543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0021 Score=71.92 Aligned_cols=324 Identities=13% Similarity=0.057 Sum_probs=197.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHH-c
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMA-TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR-A 80 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~P-d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k-~ 80 (670)
+.+-..|++.+|+.+++.|.+. .| .+..|-.|-.+|.+.|+.+.|...|-+-.+ +.|+.+...+=+.-+.+ .
T Consensus 124 N~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alq----lnP~l~ca~s~lgnLlka~ 197 (966)
T KOG4626|consen 124 NILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQ----LNPDLYCARSDLGNLLKAE 197 (966)
T ss_pred HHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh----cCcchhhhhcchhHHHHhh
Confidence 3455678899999999988874 44 567888888899999999999888876652 57777766665555544 4
Q ss_pred CCcccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHH
Q 005912 81 ESYDRVQDVAELLGMMVEDHKRLQPN-VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRA 159 (670)
Q Consensus 81 g~~~~~~eAl~lf~eM~~~~~gi~Pd-~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~a 159 (670)
| ++.+|...|.+-.+ ..|. .+.|+.|-..+-..|++..|.+.|++..+.. |+ .++.|-.|=..
T Consensus 198 G---rl~ea~~cYlkAi~----~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~-------f~dAYiNLGnV 261 (966)
T KOG4626|consen 198 G---RLEEAKACYLKAIE----TQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PN-------FLDAYINLGNV 261 (966)
T ss_pred c---ccchhHHHHHHHHh----hCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--Cc-------chHHHhhHHHH
Confidence 6 67788888877665 3454 4567777777788999999999999887642 21 23367677777
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCCchHH-HH-----hHHHHHHHHHHHHHHHHHHcC-CCHH---HHHHHHHcCCcHH
Q 005912 160 LCREGRIIELLEALEAMAKDNQPVPPRAMI-LS-----RKYRTLVSSWIEPLQEEAELG-YEID---YIARYISEGGLTG 229 (670)
Q Consensus 160 y~k~G~~eeA~~vf~~M~~~gi~i~p~~~i-~~-----~ty~~ll~a~~~ll~~m~~~G-~~pd---~i~~~~~~~g~~~ 229 (670)
|...+.+++|...+..-... +|+... .+ |--.++++-++.-+.+..+.. -.|+ -+..++...|.+.
T Consensus 262 ~ke~~~~d~Avs~Y~rAl~l----rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ 337 (966)
T KOG4626|consen 262 YKEARIFDRAVSCYLRALNL----RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVT 337 (966)
T ss_pred HHHHhcchHHHHHHHHHHhc----CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchH
Confidence 77777788887777654332 343221 00 112345555555444433222 2233 2345566677777
Q ss_pred HHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc------cC--CCCHHHHHHHHHH
Q 005912 230 ERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAV------LG--DVSESDYVRVEER 301 (670)
Q Consensus 230 ~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~------~g--~~~~~~~~~~l~~ 301 (670)
+|...++...... |+. .--|..+-..|...|.+++|..+|..-..-.-.. ++ +-..+.+..++..
T Consensus 338 ea~~cYnkaL~l~--p~h-----adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~ 410 (966)
T KOG4626|consen 338 EAVDCYNKALRLC--PNH-----ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMC 410 (966)
T ss_pred HHHHHHHHHHHhC--Ccc-----HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHH
Confidence 7777777665431 222 1112334466777777777777776654321110 00 0112223333333
Q ss_pred HHHccCC-C--------cccccccccCCHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHhCChhhhhcC
Q 005912 302 LKKLIKG-P--------EQHVLKPKAASKMVVSELKEELDAQGLPTD-GTRNVLYQRVQKARRINRSRGR 361 (670)
Q Consensus 302 l~k~~~~-p--------~~~~L~~~~g~~~~A~~l~~~M~~~Gip~d-~t~~~Ll~a~~~aG~~~eA~~~ 361 (670)
+....+- | .-|+++ ..|+...|...+.+-.... |.- ..++.|-+.+.-+|.+.+|...
T Consensus 411 YkealrI~P~fAda~~NmGnt~k-e~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~s 478 (966)
T KOG4626|consen 411 YKEALRIKPTFADALSNMGNTYK-EMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQS 478 (966)
T ss_pred HHHHHhcCchHHHHHHhcchHHH-HhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHH
Confidence 3333221 2 111222 4566777777776655433 444 6888899999999999998764
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00071 Score=76.28 Aligned_cols=248 Identities=13% Similarity=0.074 Sum_probs=153.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc-----CC-CCCHHH-HHHHHHHHHHcCChHHHHHHHHHchhC----CCCCCCC-HHH
Q 005912 2 IAEDCKAGDHSNALEIAYEMEAA-----GR-MATTFH-FNHLLSCQATCGIPEVAFATFENMEYG----EDYMKPD-TET 69 (670)
Q Consensus 2 I~~y~k~G~~~~Al~lf~~M~~~-----Gv-~Pd~~t-yn~LI~~yak~G~~e~A~~lf~~M~~~----~~gi~Pd-~~t 69 (670)
-..|...|++++|..+|..-.+. |. .|.+.+ .+.+-..|...+++.+|..+|+++... -....|. ..+
T Consensus 206 a~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~ 285 (508)
T KOG1840|consen 206 AEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAAT 285 (508)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 35789999999999999876542 32 222222 244556788889999999999888640 0122333 467
Q ss_pred HHHHHHHHHHcCCccc----HHHHHHHHHHhHhccCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHccC---CCc
Q 005912 70 YNCVIQAYTRAESYDR----VQDVAELLGMMVEDHKRLQPNVK-TYALLVECFTKYCAVTEAIRHFRALQNYEG---GTK 141 (670)
Q Consensus 70 yn~LI~ay~k~g~~~~----~~eAl~lf~eM~~~~~gi~Pd~~-Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~---~~~ 141 (670)
++.|=..|++.|++.. .+.|++++.... ....|.+. -++.+...|+..+.+++|..++....+.-. +.+
T Consensus 286 l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~---~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~ 362 (508)
T KOG1840|consen 286 LNNLAVLYYKQGKFAEAEEYCERALEIYEKLL---GASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGED 362 (508)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHhh---ccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcccc
Confidence 8888888999995543 334556665521 12233333 357788889999999999999987665321 110
Q ss_pred ccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC-CCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 005912 142 VLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPV-PPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIAR 220 (670)
Q Consensus 142 v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i-~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~ 220 (670)
- -..+.+|+.|=..|-+.|++++|.++|++..+..-.. .-.....+..++.+-.++
T Consensus 363 ~----~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~------------------- 419 (508)
T KOG1840|consen 363 N----VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAY------------------- 419 (508)
T ss_pred c----hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHH-------------------
Confidence 0 0111289999999999999999999999875432100 111111122233333333
Q ss_pred HHHcCCcHHHHHHHHHHhcc--CCCCCCcc--cchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005912 221 YISEGGLTGERKRWVPRRGK--TPLDPDAV--GFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQN 281 (670)
Q Consensus 221 ~~~~~g~~~~a~~lf~~m~~--~gi~Pd~d--~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~ 281 (670)
...+....|..+|..-.. .-+.|+.. +++|. .+...|.+.|+.+.|+++......
T Consensus 420 --~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~----nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 420 --EELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYL----NLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred --HHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHH----HHHHHHHHcccHHHHHHHHHHHHH
Confidence 444555555555544321 22334332 34444 455999999999999999887763
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0038 Score=76.28 Aligned_cols=218 Identities=11% Similarity=-0.019 Sum_probs=146.1
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHH
Q 005912 8 AGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQ 87 (670)
Q Consensus 8 ~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~ 87 (670)
.+++.+|+..|.+-... .|+......+...+...|++++|...|+++. .. .|+...+..+...+.+.| +.+
T Consensus 489 ~~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~--~~--~p~~~a~~~la~all~~G---d~~ 559 (987)
T PRK09782 489 DTLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKIS--LH--DMSNEDLLAAANTAQAAG---NGA 559 (987)
T ss_pred hCCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHh--cc--CCCcHHHHHHHHHHHHCC---CHH
Confidence 37777888877666543 3665443344445568888999988888876 22 344555667777788888 778
Q ss_pred HHHHHHHHhHhccCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCH
Q 005912 88 DVAELLGMMVEDHKRLQPNV-KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRI 166 (670)
Q Consensus 88 eAl~lf~eM~~~~~gi~Pd~-~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~ 166 (670)
+|..+|.+... .. |+. ..+..+...+...|++++|...+....+..+ + +..|..+-..|.+.|+.
T Consensus 560 eA~~~l~qAL~--l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P--~--------~~a~~~LA~~l~~lG~~ 625 (987)
T PRK09782 560 ARDRWLQQAEQ--RG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAP--S--------ANAYVARATIYRQRHNV 625 (987)
T ss_pred HHHHHHHHHHh--cC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--C--------HHHHHHHHHHHHHCCCH
Confidence 88888888776 32 433 3333344445566889999888888876432 1 12778888888889999
Q ss_pred HHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCCCCCC
Q 005912 167 IELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPD 246 (670)
Q Consensus 167 eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi~Pd 246 (670)
++|...|+...... |+... .++.+-. .+...|..++|...++...+. .|+
T Consensus 626 deA~~~l~~AL~l~----Pd~~~---a~~nLG~---------------------aL~~~G~~eeAi~~l~~AL~l--~P~ 675 (987)
T PRK09782 626 PAAVSDLRAALELE----PNNSN---YQAALGY---------------------ALWDSGDIAQSREMLERAHKG--LPD 675 (987)
T ss_pred HHHHHHHHHHHHhC----CCCHH---HHHHHHH---------------------HHHHCCCHHHHHHHHHHHHHh--CCC
Confidence 99998888877664 33221 1222222 236678899999998887653 354
Q ss_pred cccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005912 247 AVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEG 283 (670)
Q Consensus 247 ~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~g 283 (670)
.- ..+. .+...+...|++++|+..|+......
T Consensus 676 ~~-~a~~----nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 676 DP-ALIR----QLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred CH-HHHH----HHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 42 2222 34478899999999999999887554
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0025 Score=70.67 Aligned_cols=254 Identities=8% Similarity=-0.111 Sum_probs=150.5
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCH--HHHHHHHHHHHHcCCc
Q 005912 7 KAGDHSNALEIAYEMEAAGRMATTFHF-NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT--ETYNCVIQAYTRAESY 83 (670)
Q Consensus 7 k~G~~~~Al~lf~~M~~~Gv~Pd~~ty-n~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~--~tyn~LI~ay~k~g~~ 83 (670)
..|+++.|.+.+.+..+. .|+...+ =..-.++.+.|+.+.|...|.+..+ . .|+. ..--+....+.+.|
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~--~--~p~~~l~~~~~~a~l~l~~~-- 167 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAE--L--AGNDNILVEIARTRILLAQN-- 167 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--h--CCcCchHHHHHHHHHHHHCC--
Confidence 467777777777665443 3443222 2223445566777777777777541 1 2332 22233355566667
Q ss_pred ccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccc------------------
Q 005912 84 DRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLH------------------ 144 (670)
Q Consensus 84 ~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~------------------ 144 (670)
+.+.|+..++.+.+ . .| +...+..+...|...|+++.|.+++..+.+.+..+.-..
T Consensus 168 -~~~~Al~~l~~l~~--~--~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~ 242 (409)
T TIGR00540 168 -ELHAARHGVDKLLE--M--APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMAD 242 (409)
T ss_pred -CHHHHHHHHHHHHH--h--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 66677777777765 2 34 345666777777777777777777777776543211000
Q ss_pred --------cCC-------CCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCch---HHHHhHHH--HHHHHHHHH
Q 005912 145 --------NEG-------NFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRA---MILSRKYR--TLVSSWIEP 204 (670)
Q Consensus 145 --------~~g-------~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~---~i~~~ty~--~ll~a~~~l 204 (670)
... ..+..+-.+...+...|+.++|..++++..+..-. ++.. .+..+..- .-...+.+.
T Consensus 243 ~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd-~~~~~~~~l~~~~~l~~~~~~~~~~~ 321 (409)
T TIGR00540 243 EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGD-DRAISLPLCLPIPRLKPEDNEKLEKL 321 (409)
T ss_pred cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC-cccchhHHHHHhhhcCCCChHHHHHH
Confidence 000 12237888899999999999999999998886531 1110 11000000 001223333
Q ss_pred HHHH-HHcCCCH--HHH---HHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHH
Q 005912 205 LQEE-AELGYEI--DYI---ARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRT 278 (670)
Q Consensus 205 l~~m-~~~G~~p--d~i---~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~ 278 (670)
+... ....-.| ..+ -..+.+.|..++|+..|+........|+. ..+.. +...+.+.|+.++|.+++++
T Consensus 322 ~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~--~~~~~----La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 322 IEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA--NDLAM----AADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH--HHHHH----HHHHHHHcCCHHHHHHHHHH
Confidence 3322 3344446 433 24577889999999999954333445777 55543 44788999999999999987
Q ss_pred HH
Q 005912 279 LQ 280 (670)
Q Consensus 279 M~ 280 (670)
-.
T Consensus 396 ~l 397 (409)
T TIGR00540 396 SL 397 (409)
T ss_pred HH
Confidence 53
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.4e-05 Score=55.48 Aligned_cols=33 Identities=36% Similarity=0.689 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC
Q 005912 69 TYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN 106 (670)
Q Consensus 69 tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd 106 (670)
|||+||++|++.| +.++|.++|.+|.+ .|+.||
T Consensus 2 ~~n~li~~~~~~~---~~~~a~~~~~~M~~--~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAG---RVEEALELFKEMLE--RGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCC---CHHHHHHHHHHHHH--cCCCCC
Confidence 6777777777777 67777777777777 677776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0035 Score=70.24 Aligned_cols=221 Identities=14% Similarity=0.041 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHH
Q 005912 30 TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK 108 (670)
Q Consensus 30 ~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~ 108 (670)
..+|..+-+.+-..|++..|..+++.|.+ +.| .+..|.-+-.++...| +...|...|.+-.+ +.|+.+
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aie----l~p~fida~inla~al~~~~---~~~~a~~~~~~alq----lnP~l~ 184 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIE----LKPKFIDAYINLAAALVTQG---DLELAVQCFFEALQ----LNPDLY 184 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHh----cCchhhHHHhhHHHHHHhcC---CCcccHHHHHHHHh----cCcchh
Confidence 34556666677777777777777777763 233 3566777777777777 56677777776655 556665
Q ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCch
Q 005912 109 TYALLVECF-TKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRA 187 (670)
Q Consensus 109 Ty~~LL~a~-ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~ 187 (670)
...+-+.-+ ...|++.+|...+-+..+......+ .|+.|=..+-..|++..|..-|++-.+- .|+.
T Consensus 185 ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAi---------awsnLg~~f~~~Gei~~aiq~y~eAvkl----dP~f 251 (966)
T KOG4626|consen 185 CARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAI---------AWSNLGCVFNAQGEIWLAIQHYEEAVKL----DPNF 251 (966)
T ss_pred hhhcchhHHHHhhcccchhHHHHHHHHhhCCceee---------eehhcchHHhhcchHHHHHHHHHHhhcC----CCcc
Confidence 554433333 2367777777776666554333233 5777777788889999999999887554 4443
Q ss_pred HHHHhHHHHHHHHHHH-------HHHHHHHcCCCHHHHHH------HHHcCCcHHHHHHHHHHhccCCCCCCcccchhhh
Q 005912 188 MILSRKYRTLVSSWIE-------PLQEEAELGYEIDYIAR------YISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSN 254 (670)
Q Consensus 188 ~i~~~ty~~ll~a~~~-------ll~~m~~~G~~pd~i~~------~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~ 254 (670)
.- .|-.|-..+.+ +..........|+.-.. -|...|.++-|..-+++.... .|+. ...|++
T Consensus 252 ~d---AYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F-~~Ay~N 325 (966)
T KOG4626|consen 252 LD---AYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNF-PDAYNN 325 (966)
T ss_pred hH---HHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCc-hHHHhH
Confidence 22 12222222211 11223344555654322 255778999999988887542 3443 234776
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005912 255 PMETSFKQRCLEDGKKYHRKLLRTLQNEGP 284 (670)
Q Consensus 255 LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv 284 (670)
|- .++-..|++.+|.+.+.+......
T Consensus 326 la----nALkd~G~V~ea~~cYnkaL~l~p 351 (966)
T KOG4626|consen 326 LA----NALKDKGSVTEAVDCYNKALRLCP 351 (966)
T ss_pred HH----HHHHhccchHHHHHHHHHHHHhCC
Confidence 66 667888999999999988776543
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00016 Score=83.50 Aligned_cols=77 Identities=23% Similarity=0.240 Sum_probs=65.4
Q ss_pred CHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHc
Q 005912 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 80 (670)
Q Consensus 1 LI~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~ 80 (670)
||.-||..|+.+.|- +|..|+-.....+...|+.++.+..+.++.+.+. .|-..||+.|..+|.++
T Consensus 31 LiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------------ep~aDtyt~Ll~ayr~h 96 (1088)
T KOG4318|consen 31 LIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------------EPLADTYTNLLKAYRIH 96 (1088)
T ss_pred HHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------------CCchhHHHHHHHHHHhc
Confidence 578899999999999 9999998888889999999999999998865543 68899999999999999
Q ss_pred CCcccHHHHHH
Q 005912 81 ESYDRVQDVAE 91 (670)
Q Consensus 81 g~~~~~~eAl~ 91 (670)
|++...+.+.+
T Consensus 97 GDli~fe~veq 107 (1088)
T KOG4318|consen 97 GDLILFEVVEQ 107 (1088)
T ss_pred cchHHHHHHHH
Confidence 96654444444
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0038 Score=76.28 Aligned_cols=192 Identities=14% Similarity=0.053 Sum_probs=142.6
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcc
Q 005912 5 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 84 (670)
Q Consensus 5 y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~ 84 (670)
+.+.|++++|...|+++... .|+...+..+...+.+.|+++.|...|++.. ... .++...+..+...+.+.|
T Consensus 519 l~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL--~l~-P~~~~l~~~La~~l~~~G--- 590 (987)
T PRK09782 519 AYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAE--QRG-LGDNALYWWLHAQRYIPG--- 590 (987)
T ss_pred HHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHH--hcC-CccHHHHHHHHHHHHhCC---
Confidence 35799999999999997653 4555566777788899999999999999988 322 222333333333444558
Q ss_pred cHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcC
Q 005912 85 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREG 164 (670)
Q Consensus 85 ~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G 164 (670)
+.++|+..|.+-.+ +.|+...|..+-.++.+.|+.++|...|.......+.. +..++.+-..|...|
T Consensus 591 r~~eAl~~~~~AL~----l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~---------~~a~~nLG~aL~~~G 657 (987)
T PRK09782 591 QPELALNDLTRSLN----IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNN---------SNYQAALGYALWDSG 657 (987)
T ss_pred CHHHHHHHHHHHHH----hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHCC
Confidence 79999999999876 56888899999999999999999999999988754321 127888888999999
Q ss_pred CHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCCCC
Q 005912 165 RIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLD 244 (670)
Q Consensus 165 ~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi~ 244 (670)
+.++|..+|+...+.. |+... .+..+-.. +...|..++|...|+..... .
T Consensus 658 ~~eeAi~~l~~AL~l~----P~~~~---a~~nLA~a---------------------l~~lGd~~eA~~~l~~Al~l--~ 707 (987)
T PRK09782 658 DIAQSREMLERAHKGL----PDDPA---LIRQLAYV---------------------NQRLDDMAATQHYARLVIDD--I 707 (987)
T ss_pred CHHHHHHHHHHHHHhC----CCCHH---HHHHHHHH---------------------HHHCCCHHHHHHHHHHHHhc--C
Confidence 9999999999887754 33221 12332222 36678899999999888653 3
Q ss_pred CCc
Q 005912 245 PDA 247 (670)
Q Consensus 245 Pd~ 247 (670)
|+.
T Consensus 708 P~~ 710 (987)
T PRK09782 708 DNQ 710 (987)
T ss_pred CCC
Confidence 544
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.83 E-value=1.4e-05 Score=55.47 Aligned_cols=35 Identities=29% Similarity=0.442 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCH
Q 005912 31 FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT 67 (670)
Q Consensus 31 ~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~ 67 (670)
+|||+||++|++.|++++|.++|++|. +.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~--~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEML--ERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHH--HcCCCCCC
Confidence 379999999999999999999999999 89999984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.062 Score=59.65 Aligned_cols=283 Identities=11% Similarity=-0.033 Sum_probs=165.6
Q ss_pred HHHHHHHH--HcCChHHHHHHHHHchhCCCCCCCCHHH-HHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHH--
Q 005912 34 NHLLSCQA--TCGIPEVAFATFENMEYGEDYMKPDTET-YNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK-- 108 (670)
Q Consensus 34 n~LI~~ya--k~G~~e~A~~lf~~M~~~~~gi~Pd~~t-yn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~-- 108 (670)
..+..+.. ..|+++.|.+.+.... . ..|+... |-..-.++.+.| +.+.|.+.|.+..+ . .|+..
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~--~--~~~~~~~~~llaA~aa~~~g---~~~~A~~~l~~a~~--~--~p~~~l~ 154 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNA--D--HAAEPVLNLIKAAEAAQQRG---DEARANQHLEEAAE--L--AGNDNIL 154 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHh--h--cCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHH--h--CCcCchH
Confidence 44555544 4699999999998776 2 2455433 333345566778 78899999998866 2 35542
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchH
Q 005912 109 TYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAM 188 (670)
Q Consensus 109 Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~ 188 (670)
.--+....+...|+.+.|.+.++.+.+..+.. |.++..+...|.+.|++++|.+++..+.+.++. ++...
T Consensus 155 ~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~---------~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~ 224 (409)
T TIGR00540 155 VEIARTRILLAQNELHAARHGVDKLLEMAPRH---------KEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEF 224 (409)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHH
Confidence 33445777888999999999999999864321 227889999999999999999999999999863 44332
Q ss_pred H--HHhHHHHHHHHHH-----HHHHHHHHcCC-----CHHHH---HHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhh
Q 005912 189 I--LSRKYRTLVSSWI-----EPLQEEAELGY-----EIDYI---ARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYS 253 (670)
Q Consensus 189 i--~~~ty~~ll~a~~-----~ll~~m~~~G~-----~pd~i---~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~ 253 (670)
. ....+.+++.... +.+..+....- .|... ...+...|..+.|..+.+...+.. |+.....+.
T Consensus 225 ~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~ 302 (409)
T TIGR00540 225 ADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLP 302 (409)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhH
Confidence 1 0011222232211 12222222221 22221 234556666777776666655431 333111111
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHH--HHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHH
Q 005912 254 NPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSES--DYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEEL 331 (670)
Q Consensus 254 ~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~--~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M 331 (670)
++. .......++.+.+++.++...+.. |+.. .+...+-.+. .+.|.+++|.+.|+.-
T Consensus 303 -~l~--~~~~l~~~~~~~~~~~~e~~lk~~------p~~~~~~ll~sLg~l~------------~~~~~~~~A~~~le~a 361 (409)
T TIGR00540 303 -LCL--PIPRLKPEDNEKLEKLIEKQAKNV------DDKPKCCINRALGQLL------------MKHGEFIEAADAFKNV 361 (409)
T ss_pred -HHH--HhhhcCCCChHHHHHHHHHHHHhC------CCChhHHHHHHHHHHH------------HHcccHHHHHHHHHHh
Confidence 110 012233455666666665544331 2222 2222221111 2567788888888864
Q ss_pred HhCCC-CCHHHHHHHHHHHHHhCChhhhhc
Q 005912 332 DAQGL-PTDGTRNVLYQRVQKARRINRSRG 360 (670)
Q Consensus 332 ~~~Gi-p~d~t~~~Ll~a~~~aG~~~eA~~ 360 (670)
..... |....+..+-..+.+.|+.++|..
T Consensus 362 ~a~~~~p~~~~~~~La~ll~~~g~~~~A~~ 391 (409)
T TIGR00540 362 AACKEQLDANDLAMAADAFDQAGDKAEAAA 391 (409)
T ss_pred HHhhcCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 44444 555667788888888888887764
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.037 Score=62.63 Aligned_cols=196 Identities=11% Similarity=0.111 Sum_probs=107.8
Q ss_pred HHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCccccc
Q 005912 70 YNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK----TYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHN 145 (670)
Q Consensus 70 yn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~----Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~ 145 (670)
|..+-+-|-.+| +++.|..+|++-.. ... |.+. +|-.--..=.+..+++.|+++.+......-.+.+...
T Consensus 390 w~~faklYe~~~---~l~~aRvifeka~~--V~y-~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~y 463 (835)
T KOG2047|consen 390 WVEFAKLYENNG---DLDDARVIFEKATK--VPY-KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYY 463 (835)
T ss_pred HHHHHHHHHhcC---cHHHHHHHHHHhhc--CCc-cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhh
Confidence 444444555556 66677777776554 222 1111 1211112222455556666655544332222222323
Q ss_pred CCCCch---------HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHH--HHHHHHHHHHcCCC
Q 005912 146 EGNFGD---------PLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSS--WIEPLQEEAELGYE 214 (670)
Q Consensus 146 ~g~~pd---------tyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a--~~~ll~~m~~~G~~ 214 (670)
.+..|- .|+.+++---..|-++....+++.+..-.+ .+|..++ .|..++.. +++.-...-+.|+.
T Consensus 464 d~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri-aTPqii~---NyAmfLEeh~yfeesFk~YErgI~ 539 (835)
T KOG2047|consen 464 DNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI-ATPQIII---NYAMFLEEHKYFEESFKAYERGIS 539 (835)
T ss_pred cCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-CCHHHHH---HHHHHHHhhHHHHHHHHHHHcCCc
Confidence 333343 788888888889999999999999999887 4776654 34444433 33333455567775
Q ss_pred ----HHH-------HHHHHH--cCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005912 215 ----IDY-------IARYIS--EGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQ 280 (670)
Q Consensus 215 ----pd~-------i~~~~~--~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~ 280 (670)
|++ ++.+.+ .+-..+.++.+|+...+ |+.|..--+.| |+ ..+.=-+-|....|+.+++...
T Consensus 540 LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiy--Ll--YA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 540 LFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIY--LL--YAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred cCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHH--HH--HHHHHHHhhHHHHHHHHHHHHH
Confidence 443 222332 24468889999999887 77665422222 11 1111123566677888777643
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.70 E-value=3.3e-05 Score=53.58 Aligned_cols=33 Identities=27% Similarity=0.493 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC
Q 005912 68 ETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 105 (670)
Q Consensus 68 ~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P 105 (670)
+|||++|.+|++.| +.+.|+++|++|++ .|++|
T Consensus 2 ~ty~~ll~a~~~~g---~~~~a~~~~~~M~~--~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAG---DPDAALQLFDEMKE--QGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCC---CHHHHHHHHHHHHH--hCCCC
Confidence 34555555555555 44555555555555 45554
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0091 Score=68.98 Aligned_cols=214 Identities=9% Similarity=0.009 Sum_probs=123.0
Q ss_pred hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH---------HcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHH
Q 005912 11 HSNALEIAYEMEAAGRMAT-TFHFNHLLSCQA---------TCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTR 79 (670)
Q Consensus 11 ~~~Al~lf~~M~~~Gv~Pd-~~tyn~LI~~ya---------k~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k 79 (670)
+++|+.+|++..+. .|+ ...|..|-.+|. ..+++++|...+++... +.| +...|..+-..+..
T Consensus 277 ~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~----ldP~~~~a~~~lg~~~~~ 350 (553)
T PRK12370 277 LQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE----LDHNNPQALGLLGLINTI 350 (553)
T ss_pred HHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHH
Confidence 45777777766643 444 333443333332 12346777777777662 233 45666666666677
Q ss_pred cCCcccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHH
Q 005912 80 AESYDRVQDVAELLGMMVEDHKRLQPN-VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLR 158 (670)
Q Consensus 80 ~g~~~~~~eAl~lf~eM~~~~~gi~Pd-~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ 158 (670)
.| +.++|...|++..+ +.|+ ...|..+-.+|...|++++|...++...+..+... ..+..+..
T Consensus 351 ~g---~~~~A~~~~~~Al~----l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~---------~~~~~~~~ 414 (553)
T PRK12370 351 HS---EYIVGSLLFKQANL----LSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA---------AAGITKLW 414 (553)
T ss_pred cc---CHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh---------hhHHHHHH
Confidence 77 67778888877765 3454 45566667777788888888888887776533211 12333444
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHh
Q 005912 159 ALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRR 238 (670)
Q Consensus 159 ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m 238 (670)
.+...|++++|...+++..+... |+... ...++ ...+...|..++|...+..+
T Consensus 415 ~~~~~g~~eeA~~~~~~~l~~~~---p~~~~----~~~~l--------------------a~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 415 ITYYHTGIDDAIRLGDELRSQHL---QDNPI----LLSMQ--------------------VMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHHhccCHHHHHHHHHHHHHhcc---ccCHH----HHHHH--------------------HHHHHhCCCHHHHHHHHHHh
Confidence 46667778888888777665432 22110 11111 12235678888999888776
Q ss_pred ccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005912 239 GKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNE 282 (670)
Q Consensus 239 ~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~ 282 (670)
... .|+. .+... .+...|+..| +.|...++.+...
T Consensus 468 ~~~--~~~~--~~~~~---~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 468 STQ--EITG--LIAVN---LLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred hhc--cchh--HHHHH---HHHHHHhccH--HHHHHHHHHHHHH
Confidence 443 2332 32222 2335566666 4777777776543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0055 Score=70.76 Aligned_cols=152 Identities=12% Similarity=0.004 Sum_probs=115.8
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC-HHHHHHHHHHHHHcCCcccH
Q 005912 8 AGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD-TETYNCVIQAYTRAESYDRV 86 (670)
Q Consensus 8 ~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd-~~tyn~LI~ay~k~g~~~~~ 86 (670)
.+++++|...+++..+.. .-+...|..+-..+...|++++|...|++... +.|+ ...|..+-..|...| +.
T Consensus 317 ~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~----l~P~~~~a~~~lg~~l~~~G---~~ 388 (553)
T PRK12370 317 QNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANL----LSPISADIKYYYGWNLFMAG---QL 388 (553)
T ss_pred chHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCC---CH
Confidence 345889999999888652 22567777887888999999999999999873 2454 567888888999999 89
Q ss_pred HHHHHHHHHhHhccCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCC
Q 005912 87 QDVAELLGMMVEDHKRLQPNVK-TYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGR 165 (670)
Q Consensus 87 ~eAl~lf~eM~~~~~gi~Pd~~-Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~ 165 (670)
++|+..|++..+ +.|+.. .+..++..+...|++++|...+........+.. |..+..+-..|...|+
T Consensus 389 ~eAi~~~~~Al~----l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~--------~~~~~~la~~l~~~G~ 456 (553)
T PRK12370 389 EEALQTINECLK----LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDN--------PILLSMQVMFLSLKGK 456 (553)
T ss_pred HHHHHHHHHHHh----cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccC--------HHHHHHHHHHHHhCCC
Confidence 999999999877 455532 333445557778999999999998876432211 1156778888999999
Q ss_pred HHHHHHHHHHHhhC
Q 005912 166 IIELLEALEAMAKD 179 (670)
Q Consensus 166 ~eeA~~vf~~M~~~ 179 (670)
.++|...+..+...
T Consensus 457 ~~eA~~~~~~~~~~ 470 (553)
T PRK12370 457 HELARKLTKEISTQ 470 (553)
T ss_pred HHHHHHHHHHhhhc
Confidence 99999999887554
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.67 E-value=5.8e-05 Score=52.35 Aligned_cols=33 Identities=36% Similarity=0.624 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC
Q 005912 31 FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 65 (670)
Q Consensus 31 ~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P 65 (670)
.|||++|.+|++.|+++.|..+|++|. +.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~--~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMK--EQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHH--HhCCCC
Confidence 567777777777777777777777777 677666
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.61 E-value=6.3e-05 Score=50.92 Aligned_cols=30 Identities=20% Similarity=0.429 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 005912 152 PLSLYLRALCREGRIIELLEALEAMAKDNQ 181 (670)
Q Consensus 152 tyn~LI~ay~k~G~~eeA~~vf~~M~~~gi 181 (670)
+||+||++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 799999999999999999999999999874
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.018 Score=65.39 Aligned_cols=282 Identities=12% Similarity=0.057 Sum_probs=169.3
Q ss_pred ChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHH
Q 005912 10 DHSNALEIAYEMEAAGRMATT-FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQD 88 (670)
Q Consensus 10 ~~~~Al~lf~~M~~~Gv~Pd~-~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~e 88 (670)
+..+|+.+|.++... .+|+ ....-+=.+|..-+++++|.++|+.....+.-..-+...|.+.+=-+-+.= ..---
T Consensus 334 ~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v--~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV--ALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH--HHHHH
Confidence 345677777775543 2333 333444466777778888888888776422223345666776664433221 00111
Q ss_pred HHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHH
Q 005912 89 VAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIE 168 (670)
Q Consensus 89 Al~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~ee 168 (670)
|..+.+.++. ...||-++=++|+-.++.+.|.+.|+...+..... . | +|+.+=.=+.....+|.
T Consensus 410 aq~Li~~~~~-------sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~f--a--Y-----ayTLlGhE~~~~ee~d~ 473 (638)
T KOG1126|consen 410 AQDLIDTDPN-------SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRF--A--Y-----AYTLLGHESIATEEFDK 473 (638)
T ss_pred HHHHHhhCCC-------CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCcc--c--h-----hhhhcCChhhhhHHHHh
Confidence 2233333322 23678888888888888888888887776532211 1 1 45555444555666777
Q ss_pred HHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCCCCCCcc
Q 005912 169 LLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAV 248 (670)
Q Consensus 169 A~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d 248 (670)
|...|+.-... .|+..= +|.++.-. +.+.+..+.|.-.|+...+ +.|.-
T Consensus 474 a~~~fr~Al~~----~~rhYn---AwYGlG~v---------------------y~Kqek~e~Ae~~fqkA~~--INP~n- 522 (638)
T KOG1126|consen 474 AMKSFRKALGV----DPRHYN---AWYGLGTV---------------------YLKQEKLEFAEFHFQKAVE--INPSN- 522 (638)
T ss_pred HHHHHHhhhcC----CchhhH---HHHhhhhh---------------------eeccchhhHHHHHHHhhhc--CCccc-
Confidence 77777754332 444310 12222222 3566788889888887654 34543
Q ss_pred cchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHH
Q 005912 249 GFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELK 328 (670)
Q Consensus 249 ~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~ 328 (670)
..+|..+-..+-+.|+.++|+.+|++..-..-+ -....|..+.-.+ ..++..+|...+
T Consensus 523 ----svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k----n~l~~~~~~~il~--------------~~~~~~eal~~L 580 (638)
T KOG1126|consen 523 ----SVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK----NPLCKYHRASILF--------------SLGRYVEALQEL 580 (638)
T ss_pred ----hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC----CchhHHHHHHHHH--------------hhcchHHHHHHH
Confidence 233334446778899999999999987655444 2223333332111 345688999999
Q ss_pred HHHHhCCCCCH-HHHHHHHHHHHHhCChhhhhcCCCCC
Q 005912 329 EELDAQGLPTD-GTRNVLYQRVQKARRINRSRGRPLWV 365 (670)
Q Consensus 329 ~~M~~~Gip~d-~t~~~Ll~a~~~aG~~~eA~~~~~~~ 365 (670)
+++++.- |.+ ..|-.+-..|.+-|+.+.|..-+.+.
T Consensus 581 EeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A 617 (638)
T KOG1126|consen 581 EELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWA 617 (638)
T ss_pred HHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHH
Confidence 9999853 544 67888889999999999998776664
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.021 Score=64.56 Aligned_cols=258 Identities=13% Similarity=0.014 Sum_probs=163.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHchh---CCCC-CCCCHHH-HHHHHHHHHHcCCcccHHHHHHHHHHhHhccC---
Q 005912 30 TFHFNHLLSCQATCGIPEVAFATFENMEY---GEDY-MKPDTET-YNCVIQAYTRAESYDRVQDVAELLGMMVEDHK--- 101 (670)
Q Consensus 30 ~~tyn~LI~~yak~G~~e~A~~lf~~M~~---~~~g-i~Pd~~t-yn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~--- 101 (670)
..|...|-.+|+..|+++.|..+|+.-.+ ...| ..|.+.+ -+.+=..|...+ +..+|..+|.++.....
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~---k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLG---KYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHhc
Confidence 34556699999999999999999988663 0122 1233322 223444666777 78889989888864211
Q ss_pred -CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCch----HHHHHHHHHHHcCCHHHHHHHHHH
Q 005912 102 -RLQPN-VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGD----PLSLYLRALCREGRIIELLEALEA 175 (670)
Q Consensus 102 -gi~Pd-~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pd----tyn~LI~ay~k~G~~eeA~~vf~~ 175 (670)
.-.|. ..|++.|-.+|.+.|++++|...++...+---. .+|..+. .++.+...|+..+++++|..++..
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~-----~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~ 350 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK-----LLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQK 350 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH-----hhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 22333 456777888899999999999998876642100 0222222 788888899999999999999985
Q ss_pred HhhC--CCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccC---CCCCCcccc
Q 005912 176 MAKD--NQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKT---PLDPDAVGF 250 (670)
Q Consensus 176 M~~~--gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~---gi~Pd~d~~ 250 (670)
-.+. .. +.++.+..+-++..|-.. +.+.|...+|..+|+..... +..- .++
T Consensus 351 al~i~~~~-~g~~~~~~a~~~~nl~~l---------------------~~~~gk~~ea~~~~k~ai~~~~~~~~~--~~~ 406 (508)
T KOG1840|consen 351 ALKIYLDA-PGEDNVNLAKIYANLAEL---------------------YLKMGKYKEAEELYKKAIQILRELLGK--KDY 406 (508)
T ss_pred HHHHHHhh-ccccchHHHHHHHHHHHH---------------------HHHhcchhHHHHHHHHHHHHHHhcccC--cCh
Confidence 4332 11 234443333334444333 36778999999999876431 1111 124
Q ss_pred hhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHH
Q 005912 251 IYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEG--PAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELK 328 (670)
Q Consensus 251 ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~g--v~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~ 328 (670)
-.+..|..+...|.+.++..+|.++|.+-..-. +.|...-...+|..+...+. ..|+.++|.++.
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~-------------~~g~~e~a~~~~ 473 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYR-------------AQGNYEAAEELE 473 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHH-------------HcccHHHHHHHH
Confidence 445666677789999999999999998765432 22111123344444444444 445688888888
Q ss_pred HHHH
Q 005912 329 EELD 332 (670)
Q Consensus 329 ~~M~ 332 (670)
+...
T Consensus 474 ~~~~ 477 (508)
T KOG1840|consen 474 EKVL 477 (508)
T ss_pred HHHH
Confidence 7664
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.054 Score=56.99 Aligned_cols=158 Identities=13% Similarity=0.046 Sum_probs=105.5
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCH------HHHHHHHHHHHH
Q 005912 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT------ETYNCVIQAYTR 79 (670)
Q Consensus 6 ~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~------~tyn~LI~ay~k 79 (670)
.-+.+.++|.++|-+|.+. -.-+..+.-+|=+.|-+.|.++.|.++-..+.. .||. ..---|=.-|..
T Consensus 46 LLs~Q~dKAvdlF~e~l~~-d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-----spdlT~~qr~lAl~qL~~Dym~ 119 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQE-DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-----SPDLTFEQRLLALQQLGRDYMA 119 (389)
T ss_pred HhhcCcchHHHHHHHHHhc-CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-----CCCCchHHHHHHHHHHHHHHHH
Confidence 3467889999999999873 122333445566778889999999999988773 4543 333455566778
Q ss_pred cCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCch-HHHHHHH
Q 005912 80 AESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGD-PLSLYLR 158 (670)
Q Consensus 80 ~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pd-tyn~LI~ 158 (670)
.| -++.|..+|..+.. .+. --....--|+..|-...++++|..+-..+.+.+..+.-+ .-. -|--|-.
T Consensus 120 aG---l~DRAE~~f~~L~d--e~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~-----eIAqfyCELAq 188 (389)
T COG2956 120 AG---LLDRAEDIFNQLVD--EGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV-----EIAQFYCELAQ 188 (389)
T ss_pred hh---hhhHHHHHHHHHhc--chh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh-----HHHHHHHHHHH
Confidence 88 67788888888775 221 223456778999999999999999998888765442110 000 1222333
Q ss_pred HHHHcCCHHHHHHHHHHHhhCC
Q 005912 159 ALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 159 ay~k~G~~eeA~~vf~~M~~~g 180 (670)
.+.-..+++.|..++.+-.+.+
T Consensus 189 ~~~~~~~~d~A~~~l~kAlqa~ 210 (389)
T COG2956 189 QALASSDVDRARELLKKALQAD 210 (389)
T ss_pred HHhhhhhHHHHHHHHHHHHhhC
Confidence 3344677888888888776654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.043 Score=59.64 Aligned_cols=75 Identities=7% Similarity=0.014 Sum_probs=52.3
Q ss_pred HHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHH
Q 005912 219 ARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRV 298 (670)
Q Consensus 219 ~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~ 298 (670)
..||......+.+..+|+...- +.|+. .-|.-|| ..++.|.|+.++|+.+++....+ ++ -+...+..+
T Consensus 633 ~ayyidtqf~ekai~y~ekaal--iqp~~--~kwqlmi---asc~rrsgnyqka~d~yk~~hrk-fp----edldclkfl 700 (840)
T KOG2003|consen 633 AAYYIDTQFSEKAINYFEKAAL--IQPNQ--SKWQLMI---ASCFRRSGNYQKAFDLYKDIHRK-FP----EDLDCLKFL 700 (840)
T ss_pred HHHHHhhHHHHHHHHHHHHHHh--cCccH--HHHHHHH---HHHHHhcccHHHHHHHHHHHHHh-Cc----cchHHHHHH
Confidence 3566777788889999987643 56887 8887666 46778999999999999988654 22 244444444
Q ss_pred HHHHHHc
Q 005912 299 EERLKKL 305 (670)
Q Consensus 299 l~~l~k~ 305 (670)
.+.+..+
T Consensus 701 vri~~dl 707 (840)
T KOG2003|consen 701 VRIAGDL 707 (840)
T ss_pred HHHhccc
Confidence 4444443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.12 Score=58.87 Aligned_cols=267 Identities=15% Similarity=0.072 Sum_probs=154.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHH-HcC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYT-RAE 81 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~-k~g 81 (670)
..+...|++++|++++..-... +.-....+...-..|.+.|+.++|..+|..+.. ..|+...|-..+..+. -..
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~----rNPdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELID----RNPDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCcHHHHHHHHHHHhhhc
Confidence 4577899999999999664432 333445557777888999999999999999883 2466665544444443 221
Q ss_pred Cc--ccHHHHHHHHHHhHhcc--------------------------------CCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005912 82 SY--DRVQDVAELLGMMVEDH--------------------------------KRLQPNVKTYALLVECFTKYCAVTEAI 127 (670)
Q Consensus 82 ~~--~~~~eAl~lf~eM~~~~--------------------------------~gi~Pd~~Ty~~LL~a~ak~g~~d~A~ 127 (670)
.+ +.......+|+++.... +||.+ +|+.|-.-|.......-..
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHH
Confidence 10 02455556666554321 33321 4455555555444444455
Q ss_pred HHHHHHHHccCCCccccc----CCCCch----HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHH----H--hH
Q 005912 128 RHFRALQNYEGGTKVLHN----EGNFGD----PLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMIL----S--RK 193 (670)
Q Consensus 128 ~lf~~M~~~g~~~~v~~~----~g~~pd----tyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~----~--~t 193 (670)
+++.......-....... ....|. ++..|-..|-+.|+.++|+++++.-++.. |+.+-+ + +.
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht----Pt~~ely~~KarilK 239 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT----PTLVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC----CCcHHHHHHHHHHHH
Confidence 555554432111000000 011222 55667778899999999999999887764 443211 1 11
Q ss_pred HHHHHHHHHHHHHHHHHcCCCH---H-HHHHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhh--hHHHHHHHHHhcC
Q 005912 194 YRTLVSSWIEPLQEEAELGYEI---D-YIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSN--PMETSFKQRCLED 267 (670)
Q Consensus 194 y~~ll~a~~~ll~~m~~~G~~p---d-~i~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~--LIe~lv~~~~~~G 267 (670)
..+-+..+.+.+.........- | ....++-++|.+++|...+....+.+..|-.+..-.-+ .+-.+..+|.+.|
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred HCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 1122344444454444444332 2 23466778899999999999988776544332221111 1123558889999
Q ss_pred CHHHHHHHHHHHHH
Q 005912 268 GKKYHRKLLRTLQN 281 (670)
Q Consensus 268 ~~e~A~~Lf~~M~~ 281 (670)
+...|++.|.....
T Consensus 320 ~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 320 DYGLALKRFHAVLK 333 (517)
T ss_pred hHHHHHHHHHHHHH
Confidence 99888877766543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.13 Score=55.46 Aligned_cols=279 Identities=14% Similarity=0.050 Sum_probs=165.7
Q ss_pred HHHHHHHHH--cCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHH
Q 005912 34 NHLLSCQAT--CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYA 111 (670)
Q Consensus 34 n~LI~~yak--~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~ 111 (670)
+.+..+..+ .|++..|+++..+-. +.+ +--...|-.=..+--+.| +.+.+-+++.+..+ ..-.++...+-
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rna--e~~-e~p~l~~l~aA~AA~qrg---d~~~an~yL~eaae--~~~~~~l~v~l 157 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNA--EHG-EQPVLAYLLAAEAAQQRG---DEDRANRYLAEAAE--LAGDDTLAVEL 157 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhh--hcC-cchHHHHHHHHHHHHhcc---cHHHHHHHHHHHhc--cCCCchHHHHH
Confidence 445555544 589999999998866 333 223444555555556677 67788888888866 22245566677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchH--H
Q 005912 112 LLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAM--I 189 (670)
Q Consensus 112 ~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~--i 189 (670)
+........|+.+.|..-...+......+ |.+......+|.+.|+..++..++..|.+.|+ +++..+ .
T Consensus 158 trarlll~~~d~~aA~~~v~~ll~~~pr~---------~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~-l~~~e~~~l 227 (400)
T COG3071 158 TRARLLLNRRDYPAARENVDQLLEMTPRH---------PEVLRLALRAYIRLGAWQALLAILPKLRKAGL-LSDEEAARL 227 (400)
T ss_pred HHHHHHHhCCCchhHHHHHHHHHHhCcCC---------hHHHHHHHHHHHHhccHHHHHHHHHHHHHccC-CChHHHHHH
Confidence 77778889999999998888877643322 22688999999999999999999999999997 344332 1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccC-CCCCCcccchhhhhHHHHHHHHHhcCC
Q 005912 190 LSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKT-PLDPDAVGFIYSNPMETSFKQRCLEDG 268 (670)
Q Consensus 190 ~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~-gi~Pd~d~~ty~~LIe~lv~~~~~~G~ 268 (670)
-..+|.++++.+ ...+..+....+.+..... .-.|.. . . +++..+.+.|+
T Consensus 228 e~~a~~glL~q~---------------------~~~~~~~gL~~~W~~~pr~lr~~p~l--~--~----~~a~~li~l~~ 278 (400)
T COG3071 228 EQQAWEGLLQQA---------------------RDDNGSEGLKTWWKNQPRKLRNDPEL--V--V----AYAERLIRLGD 278 (400)
T ss_pred HHHHHHHHHHHH---------------------hccccchHHHHHHHhccHHhhcChhH--H--H----HHHHHHHHcCC
Confidence 234566666555 2222233333344443321 111211 1 1 12244455555
Q ss_pred HHHHHHHHHHHHHCCCCc-----cCC---CC-HHHHHHHHHHHHHccCCC-ccccc---ccccCCHHHHHHHHHHHHhCC
Q 005912 269 KKYHRKLLRTLQNEGPAV-----LGD---VS-ESDYVRVEERLKKLIKGP-EQHVL---KPKAASKMVVSELKEELDAQG 335 (670)
Q Consensus 269 ~e~A~~Lf~~M~~~gv~~-----~g~---~~-~~~~~~~l~~l~k~~~~p-~~~~L---~~~~g~~~~A~~l~~~M~~~G 335 (670)
.++|.+++.+-.+++..+ .+. .+ ..-...+-..+...+..| .+.++ .-+++.|.+|...|+.-...+
T Consensus 279 ~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~ 358 (400)
T COG3071 279 HDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLR 358 (400)
T ss_pred hHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 555555555554444331 000 01 111111111111111112 11111 137788999999999444433
Q ss_pred CCCHHHHHHHHHHHHHhCChhhhhc
Q 005912 336 LPTDGTRNVLYQRVQKARRINRSRG 360 (670)
Q Consensus 336 ip~d~t~~~Ll~a~~~aG~~~eA~~ 360 (670)
|...+|+-+-.++.+.|+..+|..
T Consensus 359 -~s~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 359 -PSASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred -CChhhHHHHHHHHHHcCChHHHHH
Confidence 666899999999999999988864
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00013 Score=49.36 Aligned_cols=27 Identities=30% Similarity=0.562 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHhHh
Q 005912 69 TYNCVIQAYTRAESYDRVQDVAELLGMMVE 98 (670)
Q Consensus 69 tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~ 98 (670)
|||+||++|++.| +.++|.++|++|++
T Consensus 2 ~y~~li~~~~~~~---~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMG---QFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccc---hHHHHHHHHHHHhH
Confidence 4444444444444 44444444444444
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0014 Score=58.75 Aligned_cols=83 Identities=14% Similarity=0.285 Sum_probs=69.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHchhCCCCC-CCCHHHHHHHHHHHHHcCC----c-ccHHHHHHHHHHhHhccCCCCCCH
Q 005912 34 NHLLSCQATCGIPEVAFATFENMEYGEDYM-KPDTETYNCVIQAYTRAES----Y-DRVQDVAELLGMMVEDHKRLQPNV 107 (670)
Q Consensus 34 n~LI~~yak~G~~e~A~~lf~~M~~~~~gi-~Pd~~tyn~LI~ay~k~g~----~-~~~~eAl~lf~eM~~~~~gi~Pd~ 107 (670)
...|.-+...+++.....+|+.++ +.|+ .|++.+||.++.+.++... + .++-..+.+|.+|.. .+++|+.
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslk--RN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~--~~lKP~~ 104 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLK--RNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILS--NKLKPND 104 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHH--hcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH--hccCCcH
Confidence 555666666799999999999999 8999 9999999999999987642 0 035678899999999 8999999
Q ss_pred HHHHHHHHHHHHc
Q 005912 108 KTYALLVECFTKY 120 (670)
Q Consensus 108 ~Ty~~LL~a~ak~ 120 (670)
.||+.++.++.+.
T Consensus 105 etYnivl~~Llkg 117 (120)
T PF08579_consen 105 ETYNIVLGSLLKG 117 (120)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887653
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00084 Score=60.05 Aligned_cols=77 Identities=17% Similarity=0.257 Sum_probs=68.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcC--------ChHHHHHHHHHchhCCCCCCCCHHHHHH
Q 005912 2 IAEDCKAGDHSNALEIAYEMEAAGR-MATTFHFNHLLSCQATCG--------IPEVAFATFENMEYGEDYMKPDTETYNC 72 (670)
Q Consensus 2 I~~y~k~G~~~~Al~lf~~M~~~Gv-~Pd~~tyn~LI~~yak~G--------~~e~A~~lf~~M~~~~~gi~Pd~~tyn~ 72 (670)
|..+...+++...-.+|+.+++.|+ .|++.+||.++.+.++.. ++-..+.+|..|. ..+++|+..|||+
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL--~~~lKP~~etYni 109 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDIL--SNKLKPNDETYNI 109 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHH--HhccCCcHHHHHH
Confidence 5566677999999999999999999 999999999999998864 3556788999999 7899999999999
Q ss_pred HHHHHHHc
Q 005912 73 VIQAYTRA 80 (670)
Q Consensus 73 LI~ay~k~ 80 (670)
+|.++.+.
T Consensus 110 vl~~Llkg 117 (120)
T PF08579_consen 110 VLGSLLKG 117 (120)
T ss_pred HHHHHHHh
Confidence 99998764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.084 Score=64.41 Aligned_cols=204 Identities=12% Similarity=0.053 Sum_probs=152.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC-----HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCC
Q 005912 29 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD-----TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL 103 (670)
Q Consensus 29 d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd-----~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi 103 (670)
+...|-.-|......+++++|++++++.. ..|.+. ...|.++++--...| .-+...++|++..+ .
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL---~tIN~REeeEKLNiWiA~lNlEn~yG---~eesl~kVFeRAcq----y 1526 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERAL---KTINFREEEEKLNIWIAYLNLENAYG---TEESLKKVFERACQ----Y 1526 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHh---hhCCcchhHHHHHHHHHHHhHHHhhC---cHHHHHHHHHHHHH----h
Confidence 46788888999999999999999999987 233222 356888888777777 67888899999876 2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC
Q 005912 104 QPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPV 183 (670)
Q Consensus 104 ~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i 183 (670)
.---..|..|...|.+.+..++|-++++.|.++ .+..+.+|..+++.+.+...-+.|.+++.+-.+.=-
T Consensus 1527 cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK---------F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP-- 1595 (1710)
T KOG1070|consen 1527 CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK---------FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLP-- 1595 (1710)
T ss_pred cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH---------hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcc--
Confidence 233467899999999999999999999999975 222233899999999999999999999987665421
Q ss_pred CCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhcc-CCCCCCcccchhhhhHHHHHHH
Q 005912 184 PPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGK-TPLDPDAVGFIYSNPMETSFKQ 262 (670)
Q Consensus 184 ~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~-~gi~Pd~d~~ty~~LIe~lv~~ 262 (670)
...+ -.+|+..+ .+--+.|..+.++.+|+.... +.-+.| .|+..| ++
T Consensus 1596 k~eH-------v~~IskfA-----------------qLEFk~GDaeRGRtlfEgll~ayPKRtD----lW~VYi----d~ 1643 (1710)
T KOG1070|consen 1596 KQEH-------VEFISKFA-----------------QLEFKYGDAERGRTLFEGLLSAYPKRTD----LWSVYI----DM 1643 (1710)
T ss_pred hhhh-------HHHHHHHH-----------------HHHhhcCCchhhHHHHHHHHhhCccchh----HHHHHH----HH
Confidence 1112 22333221 122455788899999988754 433333 366555 78
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC
Q 005912 263 RCLEDGKKYHRKLLRTLQNEGPA 285 (670)
Q Consensus 263 ~~~~G~~e~A~~Lf~~M~~~gv~ 285 (670)
-.+.|+.+.+..||+.....++.
T Consensus 1644 eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1644 EIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HHccCCHHHHHHHHHHHHhcCCC
Confidence 89999999999999999999988
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0011 Score=73.27 Aligned_cols=80 Identities=18% Similarity=0.189 Sum_probs=37.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHH
Q 005912 34 NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALL 113 (670)
Q Consensus 34 n~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~L 113 (670)
+++|..|.+.|..+.+..+++.=. ..||-||.+|||.||..+.+.| +...|.++..+|.. .+...+..|+...
T Consensus 107 ha~vR~~l~~~~~~~~l~~L~n~~--~yGiF~D~~s~n~Lmd~fl~~~---~~~~A~~V~~~~~l--Qe~~~~~~t~~L~ 179 (429)
T PF10037_consen 107 HALVRQCLELGAEDELLELLKNRL--QYGIFPDNFSFNLLMDHFLKKG---NYKSAAKVATEMML--QEEFDNPSTQALA 179 (429)
T ss_pred HHHHHHHHhcCCHHHHHHHHhChh--hcccCCChhhHHHHHHHHhhcc---cHHHHHHHHHHHHH--hhccCCchHHHHH
Confidence 345555555555555555444444 4445555555555555555555 34444444444444 3333444444444
Q ss_pred HHHHHHc
Q 005912 114 VECFTKY 120 (670)
Q Consensus 114 L~a~ak~ 120 (670)
+.+|.+.
T Consensus 180 l~~~~~~ 186 (429)
T PF10037_consen 180 LYSCYKY 186 (429)
T ss_pred HHHHHHh
Confidence 4444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.31 Score=52.38 Aligned_cols=157 Identities=11% Similarity=0.062 Sum_probs=100.4
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHHcCChHHHHHHHHHchhCCCCCCCC-HHHHHHHHHHHHHc
Q 005912 5 DCKAGDHSNALEIAYEMEAAGRMATTFHFNH---LLSCQATCGIPEVAFATFENMEYGEDYMKPD-TETYNCVIQAYTRA 80 (670)
Q Consensus 5 y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~---LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd-~~tyn~LI~ay~k~ 80 (670)
+...|++++|..++++..+. .+.+...++. +....-..+....+...+.... +..|+ ...+..+-..+...
T Consensus 53 ~~~~g~~~~A~~~~~~~l~~-~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 53 AWIAGDLPKALALLEQLLDD-YPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWA----PENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHH-CCCcHHHHHHhHHHHHhcccccCchhHHHHHhccC----cCCCCcHHHHHHHHHHHHHc
Confidence 45678899999998887764 2223334442 1111222355555555554421 12333 33444555677788
Q ss_pred CCcccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC-CcccccCCCCchHHHHHHH
Q 005912 81 ESYDRVQDVAELLGMMVEDHKRLQPN-VKTYALLVECFTKYCAVTEAIRHFRALQNYEGG-TKVLHNEGNFGDPLSLYLR 158 (670)
Q Consensus 81 g~~~~~~eAl~lf~eM~~~~~gi~Pd-~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~-~~v~~~~g~~pdtyn~LI~ 158 (670)
| +.++|...+++..+ +.|+ ...+..+-..|...|++++|.+++......... +... ...|-.+-.
T Consensus 128 G---~~~~A~~~~~~al~----~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~------~~~~~~la~ 194 (355)
T cd05804 128 G---QYDRAEEAARRALE----LNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLR------GHNWWHLAL 194 (355)
T ss_pred C---CHHHHHHHHHHHHh----hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchh------HHHHHHHHH
Confidence 8 78889999998876 2344 566777888888999999999999887664221 1110 004556778
Q ss_pred HHHHcCCHHHHHHHHHHHhhC
Q 005912 159 ALCREGRIIELLEALEAMAKD 179 (670)
Q Consensus 159 ay~k~G~~eeA~~vf~~M~~~ 179 (670)
.|...|++++|..+|+.....
T Consensus 195 ~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 195 FYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHHCCCHHHHHHHHHHHhcc
Confidence 889999999999999987443
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0053 Score=64.95 Aligned_cols=151 Identities=15% Similarity=0.153 Sum_probs=95.1
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHH--cCC
Q 005912 5 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR--AES 82 (670)
Q Consensus 5 y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k--~g~ 82 (670)
|...|+++.|++++..- .+.......+..|.+.++++.|.+.|+.|+ + +..|....+ |..+++. .|.
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~--~--~~eD~~l~q-La~awv~l~~g~ 180 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ--Q--IDEDSILTQ-LAEAWVNLATGG 180 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH--C--CSCCHHHHH-HHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH--h--cCCcHHHHH-HHHHHHHHHhCc
Confidence 44567777777666431 356666777888888888888888888887 2 234544333 3333332 121
Q ss_pred cccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCR 162 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k 162 (670)
+...+|+.+|+++.. ...++..+.+.+..++...|++++|.+++.+..... ...|++...+|..+..
T Consensus 181 -e~~~~A~y~f~El~~---~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~---------~~~~d~LaNliv~~~~ 247 (290)
T PF04733_consen 181 -EKYQDAFYIFEELSD---KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD---------PNDPDTLANLIVCSLH 247 (290)
T ss_dssp -TCCCHHHHHHHHHHC---CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC----------CCHHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHh---ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc---------cCCHHHHHHHHHHHHH
Confidence 256788888888764 356777888888888888888888888877755432 1224456667777777
Q ss_pred cCCH-HHHHHHHHHHhhC
Q 005912 163 EGRI-IELLEALEAMAKD 179 (670)
Q Consensus 163 ~G~~-eeA~~vf~~M~~~ 179 (670)
.|+. +.+.+.+.++...
T Consensus 248 ~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 248 LGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp TT-TCHHHHHHHHHCHHH
T ss_pred hCCChhHHHHHHHHHHHh
Confidence 7776 5667777777664
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.55 Score=51.87 Aligned_cols=303 Identities=13% Similarity=0.054 Sum_probs=168.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHH
Q 005912 8 AGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQ 87 (670)
Q Consensus 8 ~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~ 87 (670)
.|++..|.++|..-.+ ..|+.-.|++.|++=.+-..++.|+.++++... +.|++.+|--...-=-++| .+.
T Consensus 154 LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~----~HP~v~~wikyarFE~k~g---~~~ 224 (677)
T KOG1915|consen 154 LGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL----VHPKVSNWIKYARFEEKHG---NVA 224 (677)
T ss_pred hcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe----ecccHHHHHHHHHHHHhcC---cHH
Confidence 4666777777765433 467777778888877777777888888777652 3577777766666666677 555
Q ss_pred HHHHHHHHhHhccCCCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHccCCCc----------------------
Q 005912 88 DVAELLGMMVEDHKRLQPNVKTYALLVECFT----KYCAVTEAIRHFRALQNYEGGTK---------------------- 141 (670)
Q Consensus 88 eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~a----k~g~~d~A~~lf~~M~~~g~~~~---------------------- 141 (670)
.|..+|..-.. ..-|...-..|+.+++ ++..++.|.-+|.....+-+...
T Consensus 225 ~aR~VyerAie----~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIE 300 (677)
T KOG1915|consen 225 LARSVYERAIE----FLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIE 300 (677)
T ss_pred HHHHHHHHHHH----HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhH
Confidence 66666655443 1123333344444554 34455666666655554322110
Q ss_pred --cc-----------ccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHH
Q 005912 142 --VL-----------HNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEE 208 (670)
Q Consensus 142 --v~-----------~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m 208 (670)
++ ......-|+|=-+++.--..|+.+...++|+.-...- +|-.- ...|.-.|--+++
T Consensus 301 d~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv---pp~~e--kr~W~RYIYLWin----- 370 (677)
T KOG1915|consen 301 DAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANV---PPASE--KRYWRRYIYLWIN----- 370 (677)
T ss_pred HHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC---CchhH--HHHHHHHHHHHHH-----
Confidence 00 0001111155566666666677777777777665432 22110 0012222211111
Q ss_pred HHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccC
Q 005912 209 AELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLG 288 (670)
Q Consensus 209 ~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g 288 (670)
...+--.....++.++.+++...+ +-|. .++||+-+=-....--.++.++..|.+++.... |..
T Consensus 371 --------YalyeEle~ed~ertr~vyq~~l~--lIPH-kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~c--- 434 (677)
T KOG1915|consen 371 --------YALYEELEAEDVERTRQVYQACLD--LIPH-KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKC--- 434 (677)
T ss_pred --------HHHHHHHHhhhHHHHHHHHHHHHh--hcCc-ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccC---
Confidence 000111234467778888888766 3343 468887664223333357788889988887654 444
Q ss_pred CCCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCChhhhhcCCC
Q 005912 289 DVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGRPL 363 (670)
Q Consensus 289 ~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~Gip~d~t~~~Ll~a~~~aG~~~eA~~~~~ 363 (670)
|....+..-|+.=.++ +.++.+..++++..+.+-.+..+|.-.-..=-.-|+++.|++++.
T Consensus 435 -PK~KlFk~YIelElqL-------------~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaife 495 (677)
T KOG1915|consen 435 -PKDKLFKGYIELELQL-------------REFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFE 495 (677)
T ss_pred -CchhHHHHHHHHHHHH-------------hhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 5655555554433332 337777778888777663333666655555556677888777654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.041 Score=62.51 Aligned_cols=237 Identities=12% Similarity=0.028 Sum_probs=157.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHc-CChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHH
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAG--RMATTFHFNHLLSCQATC-GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 79 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~G--v~Pd~~tyn~LI~~yak~-G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k 79 (670)
.+|-..+++++|..+|+..+..- ..-+...|.+.|=.+-+. ..--.|..+.+.++ -.+.||.++=++|.-
T Consensus 361 rayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~-------~sPesWca~GNcfSL 433 (638)
T KOG1126|consen 361 RAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDP-------NSPESWCALGNCFSL 433 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCC-------CCcHHHHHhcchhhh
Confidence 35777889999999999998642 234777887777554332 12234555666555 357899999999999
Q ss_pred cCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHH---
Q 005912 80 AESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL--- 155 (670)
Q Consensus 80 ~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~--- 155 (670)
.+ +.+.|++.|..-.+ +.| ..++|+.+=.-+.....+|.|...|+..... .|..||+
T Consensus 434 Qk---dh~~Aik~f~RAiQ----ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~------------~~rhYnAwYG 494 (638)
T KOG1126|consen 434 QK---DHDTAIKCFKRAIQ----LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV------------DPRHYNAWYG 494 (638)
T ss_pred hh---HHHHHHHHHHHhhc----cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC------------CchhhHHHHh
Confidence 99 89999999998866 567 6788888888888999999999999876552 2335555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHH
Q 005912 156 YLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWV 235 (670)
Q Consensus 156 LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf 235 (670)
|=-.|.|.++++.|.--|+.-.+-+ +.+.++.. .+. ..+-+.|..++|..++
T Consensus 495 lG~vy~Kqek~e~Ae~~fqkA~~IN---P~nsvi~~-~~g------------------------~~~~~~k~~d~AL~~~ 546 (638)
T KOG1126|consen 495 LGTVYLKQEKLEFAEFHFQKAVEIN---PSNSVILC-HIG------------------------RIQHQLKRKDKALQLY 546 (638)
T ss_pred hhhheeccchhhHHHHHHHhhhcCC---ccchhHHh-hhh------------------------HHHHHhhhhhHHHHHH
Confidence 5567999999999999999775544 22333211 111 1123446778888888
Q ss_pred HHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHH-HHHHHcc
Q 005912 236 PRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVE-ERLKKLI 306 (670)
Q Consensus 236 ~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l-~~l~k~~ 306 (670)
+..... .|.--+--|. ....+...++.++|+..|+++...- |+......++ ..+.+++
T Consensus 547 ~~A~~l--d~kn~l~~~~-----~~~il~~~~~~~eal~~LEeLk~~v------P~es~v~~llgki~k~~~ 605 (638)
T KOG1126|consen 547 EKAIHL--DPKNPLCKYH-----RASILFSLGRYVEALQELEELKELV------PQESSVFALLGKIYKRLG 605 (638)
T ss_pred HHHHhc--CCCCchhHHH-----HHHHHHhhcchHHHHHHHHHHHHhC------cchHHHHHHHHHHHHHHc
Confidence 776432 1211111221 2244566788888988888887543 4455555544 4444433
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.44 Score=50.50 Aligned_cols=149 Identities=14% Similarity=0.018 Sum_probs=105.8
Q ss_pred CChHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCccc
Q 005912 9 GDHSNALEIAYEMEAAG-RMAT--TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 85 (670)
Q Consensus 9 G~~~~Al~lf~~M~~~G-v~Pd--~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~ 85 (670)
+..+.++.-+.++.... ..|+ ...|..+=..|.+.|+.+.|...|++... .. ..+...|+.+-..|...| +
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~--l~-P~~~~a~~~lg~~~~~~g---~ 113 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALA--LR-PDMADAYNYLGIYLTQAG---N 113 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--cC-CCCHHHHHHHHHHHHHCC---C
Confidence 44566777777777532 2222 34566666778889999999999988772 21 235788999999999999 7
Q ss_pred HHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHH-HHHHHHHHHc
Q 005912 86 VQDVAELLGMMVEDHKRLQPN-VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPL-SLYLRALCRE 163 (670)
Q Consensus 86 ~~eAl~lf~eM~~~~~gi~Pd-~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdty-n~LI~ay~k~ 163 (670)
.++|+..|+...+ +.|+ ..+|..+-.++...|++++|.+.|+...+..... .+ ......+...
T Consensus 114 ~~~A~~~~~~Al~----l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~-----------~~~~~~~~l~~~~ 178 (296)
T PRK11189 114 FDAAYEAFDSVLE----LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPND-----------PYRALWLYLAESK 178 (296)
T ss_pred HHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----------HHHHHHHHHHHcc
Confidence 8899999998876 4564 5677888888889999999999999887743221 12 1222223456
Q ss_pred CCHHHHHHHHHHHhh
Q 005912 164 GRIIELLEALEAMAK 178 (670)
Q Consensus 164 G~~eeA~~vf~~M~~ 178 (670)
++.++|...|.....
T Consensus 179 ~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 179 LDPKQAKENLKQRYE 193 (296)
T ss_pred CCHHHHHHHHHHHHh
Confidence 789999999976543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.42 Score=51.65 Aligned_cols=254 Identities=13% Similarity=0.029 Sum_probs=171.6
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHH
Q 005912 8 AGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQ 87 (670)
Q Consensus 8 ~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~ 87 (670)
.|++.+|+++..+-.+.+=.|- ..|-.-..+--+.|+.+.|-.++.+.. +..-.++...+-+.-.-....| +.+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaa--e~~~~~~l~v~ltrarlll~~~---d~~ 170 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAA--ELAGDDTLAVELTRARLLLNRR---DYP 170 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchH-HHHHHHHHHHHhcccHHHHHHHHHHHh--ccCCCchHHHHHHHHHHHHhCC---Cch
Confidence 6899999999888766654443 344444455567788899988888887 3333566677777777788888 445
Q ss_pred HHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCccc-----------------cc-----
Q 005912 88 DVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVL-----------------HN----- 145 (670)
Q Consensus 88 eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~-----------------~~----- 145 (670)
.|..-..+..+ .+ .-+.........+|.+.|++.....+...|.+.+.-.+.. +-
T Consensus 171 aA~~~v~~ll~--~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g 247 (400)
T COG3071 171 AARENVDQLLE--MT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG 247 (400)
T ss_pred hHHHHHHHHHH--hC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchH
Confidence 55555655554 22 2356778888888888888888888888888877643211 00
Q ss_pred -----------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHH-----HHHHHHH-HHH
Q 005912 146 -----------EGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLV-----SSWIEPL-QEE 208 (670)
Q Consensus 146 -----------~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll-----~a~~~ll-~~m 208 (670)
....|..-.+++.-|.++|..++|.++..+-.+++- +++-. .+-.-+ ....+.+ +..
T Consensus 248 L~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~--D~~L~----~~~~~l~~~d~~~l~k~~e~~l 321 (400)
T COG3071 248 LKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQW--DPRLC----RLIPRLRPGDPEPLIKAAEKWL 321 (400)
T ss_pred HHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc--ChhHH----HHHhhcCCCCchHHHHHHHHHH
Confidence 011122556788888999999999999988877764 44411 111110 0111222 234
Q ss_pred HHcCCCHHHHH---HHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005912 209 AELGYEIDYIA---RYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGP 284 (670)
Q Consensus 209 ~~~G~~pd~i~---~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv 284 (670)
...+-.|+.+. +.|.+.+...+|...|+.-.+. .|+. ++|+- +.+.|.+.|+.++|.+.+++-...-.
T Consensus 322 ~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~--~~~~~----la~~~~~~g~~~~A~~~r~e~L~~~~ 392 (400)
T COG3071 322 KQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSA--SDYAE----LADALDQLGEPEEAEQVRREALLLTR 392 (400)
T ss_pred HhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCCh--hhHHH----HHHHHHHcCChHHHHHHHHHHHHHhc
Confidence 56788887655 5688899999999999976554 4777 66643 45999999999999999987664433
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.033 Score=58.45 Aligned_cols=220 Identities=15% Similarity=0.136 Sum_probs=130.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHH-
Q 005912 34 NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL- 112 (670)
Q Consensus 34 n~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~- 112 (670)
+-+=.+|.+-|.+.+|...|+.-.. -.|-+.||-.|-+.|.+-. +...|+.+|.+-.. ..|-.+||-+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~----q~~~~dTfllLskvY~rid---QP~~AL~~~~~gld----~fP~~VT~l~g 295 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLT----QFPHPDTFLLLSKVYQRID---QPERALLVIGEGLD----SFPFDVTYLLG 295 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhh----cCCchhHHHHHHHHHHHhc---cHHHHHHHHhhhhh----cCCchhhhhhh
Confidence 5666777777777777777766431 1566667777777777776 77777777777654 4566666633
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHH---
Q 005912 113 LVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMI--- 189 (670)
Q Consensus 113 LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i--- 189 (670)
+...+-..++.+.|.++++...+... .++. ...++-.+|.-.++++-|++.++.+.+-|+. +|..+.
T Consensus 296 ~ARi~eam~~~~~a~~lYk~vlk~~~-~nvE--------aiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~Nig 365 (478)
T KOG1129|consen 296 QARIHEAMEQQEDALQLYKLVLKLHP-INVE--------AIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIG 365 (478)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHhcCC-ccce--------eeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHH
Confidence 44556667777777777777765432 2222 3445556666777777777777777777763 454321
Q ss_pred HHhHHHHHH----HHHHHHHHHHHHcCCCHHHHHH---HHHcCCcHHHHHHHHHHhccCCCCCCcc-cchhhhhHHHHHH
Q 005912 190 LSRKYRTLV----SSWIEPLQEEAELGYEIDYIAR---YISEGGLTGERKRWVPRRGKTPLDPDAV-GFIYSNPMETSFK 261 (670)
Q Consensus 190 ~~~ty~~ll----~a~~~ll~~m~~~G~~pd~i~~---~~~~~g~~~~a~~lf~~m~~~gi~Pd~d-~~ty~~LIe~lv~ 261 (670)
+++.|..-+ .+..+.+..+...|...|+.-. -...-|+..-|.+.|+..... |.+ .-++|+|- -
T Consensus 366 LCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~----d~~h~ealnNLa----v 437 (478)
T KOG1129|consen 366 LCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS----DAQHGEALNNLA----V 437 (478)
T ss_pred HHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc----CcchHHHHHhHH----H
Confidence 111111111 1111222333334444444321 123456777788888776543 222 24566553 4
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 005912 262 QRCLEDGKKYHRKLLRTLQNE 282 (670)
Q Consensus 262 ~~~~~G~~e~A~~Lf~~M~~~ 282 (670)
.-.+.|+++.|..++......
T Consensus 438 L~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 438 LAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHhhcCchHHHHHHHHHhhhh
Confidence 458999999999999876543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.062 Score=54.35 Aligned_cols=162 Identities=15% Similarity=0.102 Sum_probs=113.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCH-HHHHHHHHHH
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMAT----TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT-ETYNCVIQAY 77 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd----~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~-~tyn~LI~ay 77 (670)
..|.+.|+++.|...|++.... .|+ ...+..+-..|.+.|+++.|...|+.+.. ...-.|.. .++..+-.++
T Consensus 41 ~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~-~~p~~~~~~~a~~~~g~~~ 117 (235)
T TIGR03302 41 KEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR-LHPNHPDADYAYYLRGLSN 117 (235)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HCcCCCchHHHHHHHHHHH
Confidence 4577899999999999998764 232 24667788899999999999999999873 11112222 2344444444
Q ss_pred HHc--------CCcccHHHHHHHHHHhHhccCCCCCCHH-HH-----------------HHHHHHHHHcCCHHHHHHHHH
Q 005912 78 TRA--------ESYDRVQDVAELLGMMVEDHKRLQPNVK-TY-----------------ALLVECFTKYCAVTEAIRHFR 131 (670)
Q Consensus 78 ~k~--------g~~~~~~eAl~lf~eM~~~~~gi~Pd~~-Ty-----------------~~LL~a~ak~g~~d~A~~lf~ 131 (670)
.+. | +.+.|.+.|...... .|+.. .+ -.+-..|.+.|+...|...+.
T Consensus 118 ~~~~~~~~~~~~---~~~~A~~~~~~~~~~----~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~ 190 (235)
T TIGR03302 118 YNQIDRVDRDQT---AAREAFEAFQELIRR----YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFE 190 (235)
T ss_pred HHhcccccCCHH---HHHHHHHHHHHHHHH----CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 443 4 678899999998762 34432 11 123456778899999999999
Q ss_pred HHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 132 ALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 132 ~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
...+..... ...+..+..+..+|.+.|+.++|...++.+..+.
T Consensus 191 ~al~~~p~~------~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 191 TVVENYPDT------PATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHCCCC------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 988753210 0112278899999999999999999999886653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.41 Score=54.76 Aligned_cols=92 Identities=12% Similarity=0.068 Sum_probs=62.5
Q ss_pred chhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHHH
Q 005912 250 FIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKE 329 (670)
Q Consensus 250 ~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~ 329 (670)
+.|+... +...|.+.|+.++|+.+++....+.-. ...-|..--..+. +.|...+|.+..+
T Consensus 193 ~lw~~~~--lAqhyd~~g~~~~Al~~Id~aI~htPt-----~~ely~~KarilK-------------h~G~~~~Aa~~~~ 252 (517)
T PF12569_consen 193 LLWTLYF--LAQHYDYLGDYEKALEYIDKAIEHTPT-----LVELYMTKARILK-------------HAGDLKEAAEAMD 252 (517)
T ss_pred HHHHHHH--HHHHHHHhCCHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHH-------------HCCCHHHHHHHHH
Confidence 4454443 567788999999999999988776422 1222222223333 5677889998888
Q ss_pred HHHhCCCCCHHHHHHHHHHHHHhCChhhhhcC
Q 005912 330 ELDAQGLPTDGTRNVLYQRVQKARRINRSRGR 361 (670)
Q Consensus 330 ~M~~~Gip~d~t~~~Ll~a~~~aG~~~eA~~~ 361 (670)
.-+..-.-....=+--...+.++|++++|...
T Consensus 253 ~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~ 284 (517)
T PF12569_consen 253 EARELDLADRYINSKCAKYLLRAGRIEEAEKT 284 (517)
T ss_pred HHHhCChhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 88776654445555567778899999998865
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.27 Score=51.89 Aligned_cols=120 Identities=15% Similarity=0.127 Sum_probs=85.1
Q ss_pred cCChHHHHHHHHHchhCCCCCCCCHHHHH---HHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHH--HHHHHHH
Q 005912 43 CGIPEVAFATFENMEYGEDYMKPDTETYN---CVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY--ALLVECF 117 (670)
Q Consensus 43 ~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn---~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty--~~LL~a~ 117 (670)
..++++|..+|-+|. .-|..||- +|=+-|-+.| .++.|+++-.-+... .++.-+.... --|-.-|
T Consensus 48 s~Q~dKAvdlF~e~l------~~d~~t~e~~ltLGnLfRsRG---EvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 48 SNQPDKAVDLFLEML------QEDPETFEAHLTLGNLFRSRG---EVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred hcCcchHHHHHHHHH------hcCchhhHHHHHHHHHHHhcc---hHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHH
Confidence 468899999999998 44554443 4555677788 899999999888762 2222222211 2244556
Q ss_pred HHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 005912 118 TKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQ 181 (670)
Q Consensus 118 ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi 181 (670)
-..|.+|.|+.+|..+..-+.- -+...--|+.-|-....+++|.++=+++.+.+-
T Consensus 118 m~aGl~DRAE~~f~~L~de~ef---------a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~ 172 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDEGEF---------AEGALQQLLNIYQATREWEKAIDVAERLVKLGG 172 (389)
T ss_pred HHhhhhhHHHHHHHHHhcchhh---------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC
Confidence 7899999999999988763210 011566799999999999999999998887764
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0093 Score=66.00 Aligned_cols=134 Identities=10% Similarity=0.076 Sum_probs=104.0
Q ss_pred HHHHHH---HcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHH
Q 005912 17 IAYEME---AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELL 93 (670)
Q Consensus 17 lf~~M~---~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf 93 (670)
++..|. ..+...+.+....+++.+...-+++.+..++-+.........--..|.+++|..|.+.| ..+.++.++
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~---~~~~~l~~L 126 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELG---AEDELLELL 126 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcC---CHHHHHHHH
Confidence 444444 23566788889999999998899999999888887411122222334469999999999 789999999
Q ss_pred HHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHc
Q 005912 94 GMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCRE 163 (670)
Q Consensus 94 ~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~ 163 (670)
..=.. .|+-||.+|||.||..+.+.|++..|.++...|...+...+-. |+..-+.+|.+.
T Consensus 127 ~n~~~--yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~--------t~~L~l~~~~~~ 186 (429)
T PF10037_consen 127 KNRLQ--YGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPS--------TQALALYSCYKY 186 (429)
T ss_pred hChhh--cccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCch--------HHHHHHHHHHHh
Confidence 99888 9999999999999999999999999999999998765433222 666666666665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.71 Score=50.95 Aligned_cols=113 Identities=12% Similarity=0.041 Sum_probs=74.5
Q ss_pred HcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHH
Q 005912 223 SEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERL 302 (670)
Q Consensus 223 ~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l 302 (670)
.--++..-|.-+|+.... ++|+ |...|.+|= ..|.+-+++++|++.|......|-. +...+..+-..+
T Consensus 409 eim~Mh~YaLyYfqkA~~--~kPn-DsRlw~aLG----~CY~kl~~~~eAiKCykrai~~~dt-----e~~~l~~LakLy 476 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALE--LKPN-DSRLWVALG----ECYEKLNRLEEAIKCYKRAILLGDT-----EGSALVRLAKLY 476 (559)
T ss_pred HHhcchHHHHHHHHHHHh--cCCC-chHHHHHHH----HHHHHhccHHHHHHHHHHHHhcccc-----chHHHHHHHHHH
Confidence 334455556666666543 4565 346676555 8889999999999999988876654 556666666666
Q ss_pred HHccCCCcccccccccCCHHHHHHHHHHH----HhCCCCCH---HHHHHHHHHHHHhCChhhhhc
Q 005912 303 KKLIKGPEQHVLKPKAASKMVVSELKEEL----DAQGLPTD---GTRNVLYQRVQKARRINRSRG 360 (670)
Q Consensus 303 ~k~~~~p~~~~L~~~~g~~~~A~~l~~~M----~~~Gip~d---~t~~~Ll~a~~~aG~~~eA~~ 360 (670)
.++.. ..+|...|+.- ...|...+ ....-|-.-+.+.+++++|..
T Consensus 477 e~l~d-------------~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~ 528 (559)
T KOG1155|consen 477 EELKD-------------LNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASY 528 (559)
T ss_pred HHHHh-------------HHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHH
Confidence 66554 66777777554 34566333 233346677788888888864
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0044 Score=61.82 Aligned_cols=106 Identities=17% Similarity=0.274 Sum_probs=87.2
Q ss_pred CCCCHHHHHHHHHHHHHc-----CChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC------------c-ccHH
Q 005912 26 RMATTFHFNHLLSCQATC-----GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES------------Y-DRVQ 87 (670)
Q Consensus 26 v~Pd~~tyn~LI~~yak~-----G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~------------~-~~~~ 87 (670)
-..|-.+|..+|..|.+. |.++-....+..|. +.|+..|..+||.||..+=+..- | .+.+
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~--efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~ 120 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMD--EFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQE 120 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHH--HcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHH
Confidence 346889999999999865 78999999999999 89999999999999999876321 1 2456
Q ss_pred HHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHH
Q 005912 88 DVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAV-TEAIRHFRALQN 135 (670)
Q Consensus 88 eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~-d~A~~lf~~M~~ 135 (670)
-|++++++|.. .|+.||..|+..|++.|++.+.. .+..++.-.|-+
T Consensus 121 c~i~lL~qME~--~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 121 CAIDLLEQMEN--NGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred HHHHHHHHHHH--cCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 78999999999 99999999999999999988764 345555555554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.18 Score=53.43 Aligned_cols=189 Identities=15% Similarity=0.026 Sum_probs=124.3
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC-HHHHHHHHHHHHHcCC
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD-TETYNCVIQAYTRAES 82 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd-~~tyn~LI~ay~k~g~ 82 (670)
.|.+.|+.+.|+..|.+..+.. ..+...|+.+-..|...|+++.|...|++... +.|+ ..+|..+-..|...|
T Consensus 73 ~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~----l~P~~~~a~~~lg~~l~~~g- 146 (296)
T PRK11189 73 LYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE----LDPTYNYAYLNRGIALYYGG- 146 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCC-
Confidence 4677899999999999888742 23578899999999999999999999999873 3454 677888888889999
Q ss_pred cccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCR 162 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k 162 (670)
+.++|++.|+.-.+ ..|+..........+...++.++|...|....... .+. .|.. --.+..
T Consensus 147 --~~~eA~~~~~~al~----~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~----------~~~~-~~~~~~ 208 (296)
T PRK11189 147 --RYELAQDDLLAFYQ----DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKE----------QWGW-NIVEFY 208 (296)
T ss_pred --CHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-Ccc----------ccHH-HHHHHH
Confidence 88999999998876 35654322333333446778999999997654321 111 2321 222334
Q ss_pred cCCHHHHHHHHHHHhhCC---CCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhc
Q 005912 163 EGRIIELLEALEAMAKDN---QPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRG 239 (670)
Q Consensus 163 ~G~~eeA~~vf~~M~~~g---i~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~ 239 (670)
.|+..++ ..|..+.+.- +.+.|+.. -.|..+ -..+...|..++|...|+...
T Consensus 209 lg~~~~~-~~~~~~~~~~~~~~~l~~~~~---ea~~~L---------------------g~~~~~~g~~~~A~~~~~~Al 263 (296)
T PRK11189 209 LGKISEE-TLMERLKAGATDNTELAERLC---ETYFYL---------------------AKYYLSLGDLDEAAALFKLAL 263 (296)
T ss_pred ccCCCHH-HHHHHHHhcCCCcHHHHHHHH---HHHHHH---------------------HHHHHHCCCHHHHHHHHHHHH
Confidence 5666554 3555554321 11111100 012111 123467889999999999886
Q ss_pred cC
Q 005912 240 KT 241 (670)
Q Consensus 240 ~~ 241 (670)
..
T Consensus 264 ~~ 265 (296)
T PRK11189 264 AN 265 (296)
T ss_pred Hh
Confidence 54
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.076 Score=58.51 Aligned_cols=124 Identities=12% Similarity=0.074 Sum_probs=96.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHH
Q 005912 34 NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALL 113 (670)
Q Consensus 34 n~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~L 113 (670)
.+|+..+...++++.|..+|+++.. .. |+ .+-.|.+.|...+ +-.+|++++.+... . ..-|......-
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~--~~--pe--v~~~LA~v~l~~~---~E~~AI~ll~~aL~--~-~p~d~~LL~~Q 240 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRE--RD--PE--VAVLLARVYLLMN---EEVEAIRLLNEALK--E-NPQDSELLNLQ 240 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHh--cC--Cc--HHHHHHHHHHhcC---cHHHHHHHHHHHHH--h-CCCCHHHHHHH
Confidence 4555566667999999999999982 22 54 4556888888887 67899999999876 2 22356666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005912 114 VECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAK 178 (670)
Q Consensus 114 L~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~ 178 (670)
...|.+.++.+.|..+.+.+....+. ... +|..|..+|.+.|+++.|+-.++.|..
T Consensus 241 a~fLl~k~~~~lAL~iAk~av~lsP~-~f~--------~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 241 AEFLLSKKKYELALEIAKKAVELSPS-EFE--------TWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCch-hHH--------HHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 77788999999999999999874321 111 899999999999999999999998853
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.089 Score=55.71 Aligned_cols=28 Identities=21% Similarity=0.230 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005912 108 KTYALLVECFTKYCAVTEAIRHFRALQN 135 (670)
Q Consensus 108 ~Ty~~LL~a~ak~g~~d~A~~lf~~M~~ 135 (670)
......+..|.+.++++.|.+.++.|.+
T Consensus 132 E~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 132 ELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444455555555555555555555543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.008 Score=60.02 Aligned_cols=88 Identities=18% Similarity=0.227 Sum_probs=70.9
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----------------ChHHHHHHHHHchhCCCCCCCCHHHH
Q 005912 7 KAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG----------------IPEVAFATFENMEYGEDYMKPDTETY 70 (670)
Q Consensus 7 k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G----------------~~e~A~~lf~~M~~~~~gi~Pd~~ty 70 (670)
+.|.++=...-+..|.+.|+.-|..+||.||+.+=+.. +.+-|.+++++|. ..|+-||..|+
T Consensus 64 RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME--~~gV~Pd~Et~ 141 (228)
T PF06239_consen 64 RRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQME--NNGVMPDKETE 141 (228)
T ss_pred CcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHH--HcCCCCcHHHH
Confidence 45777777778899999999999999999999876532 3567999999999 89999999999
Q ss_pred HHHHHHHHHcCCcccHHHHHHHHHHhHh
Q 005912 71 NCVIQAYTRAESYDRVQDVAELLGMMVE 98 (670)
Q Consensus 71 n~LI~ay~k~g~~~~~~eAl~lf~eM~~ 98 (670)
..|++.|++.+. -+....++.--|.+
T Consensus 142 ~~ll~iFG~~s~--p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 142 QMLLNIFGRKSH--PMKKYRRMMYWMPK 167 (228)
T ss_pred HHHHHHhccccH--HHHHHHHHHHHHHH
Confidence 999999999883 23444444444443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.072 Score=54.72 Aligned_cols=153 Identities=14% Similarity=0.081 Sum_probs=112.6
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHc-CC
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA-ES 82 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~-g~ 82 (670)
.|++.|++++|++...... +....-.=+..+.+..+++.|...++.|.+ --+-.|-+-|-.++++- +.
T Consensus 117 i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~-----ided~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 117 IYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQ-----IDEDATLTQLAQAWVKLATG 185 (299)
T ss_pred HhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----cchHHHHHHHHHHHHHHhcc
Confidence 5788999999998876621 334444444556677889999999999994 34556777677776652 11
Q ss_pred cccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCR 162 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k 162 (670)
-+++.+|+-+|++|.+ ...|+..+.+-...++...|++++|..++++...+ +...|++...+|-+--.
T Consensus 186 gek~qdAfyifeE~s~---k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k---------d~~dpetL~Nliv~a~~ 253 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSE---KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK---------DAKDPETLANLIVLALH 253 (299)
T ss_pred chhhhhHHHHHHHHhc---ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc---------cCCCHHHHHHHHHHHHH
Confidence 1269999999999974 58899999999999999999999999999998875 34446666666666666
Q ss_pred cCCHHHH-HHHHHHHhhC
Q 005912 163 EGRIIEL-LEALEAMAKD 179 (670)
Q Consensus 163 ~G~~eeA-~~vf~~M~~~ 179 (670)
.|...++ .+.+.+++..
T Consensus 254 ~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 254 LGKDAEVTERNLSQLKLS 271 (299)
T ss_pred hCCChHHHHHHHHHHHhc
Confidence 7766554 4566666554
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=96.51 E-value=2.8 Score=49.78 Aligned_cols=318 Identities=11% Similarity=-0.008 Sum_probs=185.4
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCc
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESY 83 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~ 83 (670)
.|++ |++++|.+++.+.... ..-+...|-.|=..|=..|+.+++...+--.. .-.+.|..-|-.+-.-..+.|
T Consensus 149 lfar-g~~eeA~~i~~EvIkq-dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAA---HL~p~d~e~W~~ladls~~~~-- 221 (895)
T KOG2076|consen 149 LFAR-GDLEEAEEILMEVIKQ-DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAA---HLNPKDYELWKRLADLSEQLG-- 221 (895)
T ss_pred HHHh-CCHHHHHHHHHHHHHh-CccchhhHHHHHHHHHHcccHHHHHHHHHHHH---hcCCCChHHHHHHHHHHHhcc--
Confidence 3455 9999999999998865 34467889999999999999999998775544 233556788888888888888
Q ss_pred ccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHc
Q 005912 84 DRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCRE 163 (670)
Q Consensus 84 ~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~ 163 (670)
.+..|.-+|.+-.+ . -.+++..+---...|-+.|+...|..-|.++....++.+... +-++.-.++..|...
T Consensus 222 -~i~qA~~cy~rAI~--~-~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er----~~d~i~~~~~~~~~~ 293 (895)
T KOG2076|consen 222 -NINQARYCYSRAIQ--A-NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIER----IEDLIRRVAHYFITH 293 (895)
T ss_pred -cHHHHHHHHHHHHh--c-CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHH----HHHHHHHHHHHHHHh
Confidence 78899999988876 2 234555555566778899999999999999887654322110 011333445566666
Q ss_pred CCHHHHHHHHHHHhhCC--CCCCCchHHHHhHHHHHH------HHHHHHHHHHHHc---------------CCCHH----
Q 005912 164 GRIIELLEALEAMAKDN--QPVPPRAMILSRKYRTLV------SSWIEPLQEEAEL---------------GYEID---- 216 (670)
Q Consensus 164 G~~eeA~~vf~~M~~~g--i~i~p~~~i~~~ty~~ll------~a~~~ll~~m~~~---------------G~~pd---- 216 (670)
+.-+.|.+.++.-...+ ..--++.-+ +-.++ +.+...+..+... ...|+
T Consensus 294 ~~~e~a~~~le~~~s~~~~~~~~ed~ni----~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~ 369 (895)
T KOG2076|consen 294 NERERAAKALEGALSKEKDEASLEDLNI----LAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCE 369 (895)
T ss_pred hHHHHHHHHHHHHHhhccccccccHHHH----HHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccccccc
Confidence 66677777777655522 111122111 11111 0011112222210 01111
Q ss_pred ----------HHHHHHH--cCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005912 217 ----------YIARYIS--EGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGP 284 (670)
Q Consensus 217 ----------~i~~~~~--~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv 284 (670)
++....| +-.-.+....+........+.|..+ .-|+--+.++|...|+..+|+++|..+.....
T Consensus 370 ~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~----~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~ 445 (895)
T KOG2076|consen 370 VGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDD----VDLYLDLADALTNIGKYKEALRLLSPITNREG 445 (895)
T ss_pred CCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhh----HHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc
Confidence 1111111 1111222222233333333222221 12223456888899999999999988876654
Q ss_pred CccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCChhhhhcC
Q 005912 285 AVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGR 361 (670)
Q Consensus 285 ~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~Gip~d~t~~~Ll~a~~~aG~~~eA~~~ 361 (670)
. -+...+-.+-+.+. ..+..+.|.+.|+.....---+.....+|-+.+...|+.++|...
T Consensus 446 ~----~~~~vw~~~a~c~~-------------~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEt 505 (895)
T KOG2076|consen 446 Y----QNAFVWYKLARCYM-------------ELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALET 505 (895)
T ss_pred c----cchhhhHHHHHHHH-------------HHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHH
Confidence 4 23222222222222 334588888888887765432224555566667788998888754
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.15 Score=53.66 Aligned_cols=163 Identities=11% Similarity=-0.036 Sum_probs=103.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC
Q 005912 60 EDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGG 139 (670)
Q Consensus 60 ~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~ 139 (670)
+.+...|--=-+-|=++|.+.| ...+|.+.|..-.. -.|-..||..|-..|.+..++..|+.+|.+-...- +
T Consensus 216 ~~~~~~dwwWk~Q~gkCylrLg---m~r~AekqlqssL~----q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P 287 (478)
T KOG1129|consen 216 STGCTLDWWWKQQMGKCYLRLG---MPRRAEKQLQSSLT----QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-P 287 (478)
T ss_pred cccchHhHHHHHHHHHHHHHhc---ChhhhHHHHHHHhh----cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-C
Confidence 3344444443477889999999 78899999988766 35777899999999999999999999999877642 2
Q ss_pred CcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC-CCCCC-chHHHHhHHHHHHHHHHHHHHHHHHcCCC-HH
Q 005912 140 TKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN-QPVPP-RAMILSRKYRTLVSSWIEPLQEEAELGYE-ID 216 (670)
Q Consensus 140 ~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g-i~i~p-~~~i~~~ty~~ll~a~~~ll~~m~~~G~~-pd 216 (670)
-++. ...-+-+.+-.-++.++|.++++...+.. +.+.. -.+-.+|.|..--+-+...+++....|.. |.
T Consensus 288 ~~VT--------~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~spe 359 (478)
T KOG1129|consen 288 FDVT--------YLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPE 359 (478)
T ss_pred chhh--------hhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChH
Confidence 2332 22335566777899999999999887654 11111 11123344555445555555555555554 33
Q ss_pred HHH---HHHHcCCcHHHHHHHHHHh
Q 005912 217 YIA---RYISEGGLTGERKRWVPRR 238 (670)
Q Consensus 217 ~i~---~~~~~~g~~~~a~~lf~~m 238 (670)
.+. -.|--++.++-+..-|++.
T Consensus 360 Lf~NigLCC~yaqQ~D~~L~sf~RA 384 (478)
T KOG1129|consen 360 LFCNIGLCCLYAQQIDLVLPSFQRA 384 (478)
T ss_pred HHhhHHHHHHhhcchhhhHHHHHHH
Confidence 322 2233344555555445444
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.12 Score=63.01 Aligned_cols=151 Identities=13% Similarity=0.057 Sum_probs=85.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHH
Q 005912 10 DHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDV 89 (670)
Q Consensus 10 ~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eA 89 (670)
.-+...++|++..+. .-....|..|...|.+....++|-++|+.|.. .+.-....|...+..+.+.+ +.+.|
T Consensus 1512 ~eesl~kVFeRAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~K---KF~q~~~vW~~y~~fLl~~n---e~~aa 1583 (1710)
T KOG1070|consen 1512 TEESLKKVFERACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLK---KFGQTRKVWIMYADFLLRQN---EAEAA 1583 (1710)
T ss_pred cHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHH---HhcchhhHHHHHHHHHhccc---HHHHH
Confidence 334444455544442 11123445566666666666666666666652 22234555666666666666 55666
Q ss_pred HHHHHHhHhccCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCH
Q 005912 90 AELLGMMVEDHKRLQPN---VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRI 166 (670)
Q Consensus 90 l~lf~eM~~~~~gi~Pd---~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~ 166 (670)
..++.+-.. ..|- ....+-....-.+.|+.++++.+|+..... |-+..|.||.+|++=.++|..
T Consensus 1584 ~~lL~rAL~----~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a---------yPKRtDlW~VYid~eik~~~~ 1650 (1710)
T KOG1070|consen 1584 RELLKRALK----SLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA---------YPKRTDLWSVYIDMEIKHGDI 1650 (1710)
T ss_pred HHHHHHHHh----hcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh---------CccchhHHHHHHHHHHccCCH
Confidence 666655433 1232 111122222223566666666666666553 333444788888888888888
Q ss_pred HHHHHHHHHHhhCCC
Q 005912 167 IELLEALEAMAKDNQ 181 (670)
Q Consensus 167 eeA~~vf~~M~~~gi 181 (670)
+.+..+|++....++
T Consensus 1651 ~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1651 KYVRDLFERVIELKL 1665 (1710)
T ss_pred HHHHHHHHHHHhcCC
Confidence 888888888877776
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.062 Score=59.19 Aligned_cols=120 Identities=14% Similarity=0.107 Sum_probs=97.1
Q ss_pred CHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHc
Q 005912 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 80 (670)
Q Consensus 1 LI~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~ 80 (670)
|+..+...++++.|+.+|+++.+.. |++. -.|...|...++-.+|.+++++... ....|....+.-..-|.+.
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pev~--~~LA~v~l~~~~E~~AI~ll~~aL~---~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PEVA--VLLARVYLLMNEEVEAIRLLNEALK---ENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--CcHH--HHHHHHHHhcCcHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhc
Confidence 3566677889999999999999874 6644 4578888888999999999988772 1233566666666778888
Q ss_pred CCcccHHHHHHHHHHhHhccCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005912 81 ESYDRVQDVAELLGMMVEDHKRLQPNVK-TYALLVECFTKYCAVTEAIRHFRALQ 134 (670)
Q Consensus 81 g~~~~~~eAl~lf~eM~~~~~gi~Pd~~-Ty~~LL~a~ak~g~~d~A~~lf~~M~ 134 (670)
+ +.+.|+.+..++.. +.|+.+ +|..|..+|.+.|+++.|+..++.+-
T Consensus 248 ~---~~~lAL~iAk~av~----lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 K---KYELALEIAKKAVE----LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred C---CHHHHHHHHHHHHH----hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8 78999999999976 678765 99999999999999999999988664
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.30 E-value=3 Score=47.98 Aligned_cols=312 Identities=13% Similarity=0.041 Sum_probs=182.9
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCc
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESY 83 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~ 83 (670)
.|.+.+.++-|+.+|....+- +.-....|-....+=-..|..+.-..+|.+.. ..+....+.|-...+.+-.+|
T Consensus 525 ~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav---~~~pkae~lwlM~ake~w~ag-- 598 (913)
T KOG0495|consen 525 SCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAV---EQCPKAEILWLMYAKEKWKAG-- 598 (913)
T ss_pred HHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHH---HhCCcchhHHHHHHHHHHhcC--
Confidence 355566666666666665542 33345556555555556677777777777765 334455566766677777777
Q ss_pred ccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHH
Q 005912 84 DRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCR 162 (670)
Q Consensus 84 ~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k 162 (670)
++..|..++.+..+ ..| +...|-..+..-..+..++.|+.+|..........- +|.--++.---
T Consensus 599 -dv~~ar~il~~af~----~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeR----------v~mKs~~~er~ 663 (913)
T KOG0495|consen 599 -DVPAARVILDQAFE----ANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTER----------VWMKSANLERY 663 (913)
T ss_pred -CcHHHHHHHHHHHH----hCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcch----------hhHHHhHHHHH
Confidence 67777777777665 223 445666677777777788888888877665322111 45555555566
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHH---------HHcCCC--HHHH------HHHHHcC
Q 005912 163 EGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEE---------AELGYE--IDYI------ARYISEG 225 (670)
Q Consensus 163 ~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m---------~~~G~~--pd~i------~~~~~~~ 225 (670)
.++.++|.+++++..+.- |+ |+.+.--.-+++++| -..|.. |+.+ ...--+.
T Consensus 664 ld~~eeA~rllEe~lk~f----p~-------f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~ 732 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALKSF----PD-------FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKD 732 (913)
T ss_pred hhhHHHHHHHHHHHHHhC----Cc-------hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHh
Confidence 677888888887766543 22 222211111122221 113332 4432 2333345
Q ss_pred CcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC----ccCCCCHHHHHH
Q 005912 226 GLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNE----GPA----VLGDVSESDYVR 297 (670)
Q Consensus 226 g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~----gv~----~~g~~~~~~~~~ 297 (670)
|.+-.|+.+++.-..+. |.. ..-|-..| .+=.|.|+.+.|..+.....+. |+- +...+....-+.
T Consensus 733 ~~~~rAR~ildrarlkN--Pk~-~~lwle~I----r~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTk 805 (913)
T KOG0495|consen 733 GQLVRARSILDRARLKN--PKN-ALLWLESI----RMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTK 805 (913)
T ss_pred cchhhHHHHHHHHHhcC--CCc-chhHHHHH----HHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchH
Confidence 56677888887765432 332 24564444 7779999999998887665543 221 111222222334
Q ss_pred HHHHHHHccCCCcccccc------cccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCChh
Q 005912 298 VEERLKKLIKGPEQHVLK------PKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRIN 356 (670)
Q Consensus 298 ~l~~l~k~~~~p~~~~L~------~~~g~~~~A~~l~~~M~~~Gip~d~t~~~Ll~a~~~aG~~~ 356 (670)
.++++.+....| -+++ -....++.|.++|.+-...+--+..+|.-++..+...|.-+
T Consensus 806 s~DALkkce~dp--hVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~ee 868 (913)
T KOG0495|consen 806 SIDALKKCEHDP--HVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEE 868 (913)
T ss_pred HHHHHHhccCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHH
Confidence 446666654432 1111 24457889999999988877555578888888888888543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.61 Score=47.17 Aligned_cols=159 Identities=12% Similarity=0.022 Sum_probs=120.5
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC-HHHHHHHHHHHHHcC
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMA-TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD-TETYNCVIQAYTRAE 81 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~P-d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd-~~tyn~LI~ay~k~g 81 (670)
+|.+.|++..|..-+++-.+. .| +..+|..+-..|-+.|..+.|.+-|+.-.+ +.|+ ...-|.-=--+|..|
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls----l~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS----LAPNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh----cCCCccchhhhhhHHHHhCC
Confidence 688899999999999988874 34 466888888999999999999999988663 2333 233333333457788
Q ss_pred CcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHH
Q 005912 82 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALC 161 (670)
Q Consensus 82 ~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~ 161 (670)
+.++|...|++-..+ ...---..||..+--|..+.|+.+.|...|..-....... |-+.-.+-...-
T Consensus 118 ---~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~---------~~~~l~~a~~~~ 184 (250)
T COG3063 118 ---RPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF---------PPALLELARLHY 184 (250)
T ss_pred ---ChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC---------ChHHHHHHHHHH
Confidence 788999999987773 2222235688888888889999999999999887753221 115667888888
Q ss_pred HcCCHHHHHHHHHHHhhCCC
Q 005912 162 REGRIIELLEALEAMAKDNQ 181 (670)
Q Consensus 162 k~G~~eeA~~vf~~M~~~gi 181 (670)
+.|++-.|...++....++.
T Consensus 185 ~~~~y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 185 KAGDYAPARLYLERYQQRGG 204 (250)
T ss_pred hcccchHHHHHHHHHHhccc
Confidence 99999999999998888774
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.049 Score=57.33 Aligned_cols=136 Identities=7% Similarity=0.033 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHH
Q 005912 30 TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 109 (670)
Q Consensus 30 ~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~T 109 (670)
+.+|-.+|++.-|.+.++.|+.+|.+... ...+..++....++|.-++.. +.+.|.++|+.... .+.-+..-
T Consensus 1 t~v~i~~m~~~~r~~g~~~aR~vF~~a~~-~~~~~~~vy~~~A~~E~~~~~----d~~~A~~Ife~glk---~f~~~~~~ 72 (280)
T PF05843_consen 1 TLVWIQYMRFMRRTEGIEAARKVFKRARK-DKRCTYHVYVAYALMEYYCNK----DPKRARKIFERGLK---KFPSDPDF 72 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCS-THHHHHHHHHHHHTCS-----HHHHHHHHHHHHH---HHTT-HHH
T ss_pred CHHHHHHHHHHHHhCChHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHH---HCCCCHHH
Confidence 36789999999999999999999999983 344566777777777655433 46779999999876 24556677
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 005912 110 YALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKD 179 (670)
Q Consensus 110 y~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~ 179 (670)
|..-+.-+.+.++.+.|+.+|+..... ++..-. ....|..+|+.=.+.|+++.+..|...+.+.
T Consensus 73 ~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~-----~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 73 WLEYLDFLIKLNDINNARALFERAISS-LPKEKQ-----SKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHH-----CHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhH-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 778888889999999999999998764 222110 0117999999999999999999999988775
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.95 Score=45.08 Aligned_cols=148 Identities=9% Similarity=0.052 Sum_probs=104.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
..|...|++..+..-.+.+.. |. . -|...++.+++...++.... .-..|...|..|-..|...|
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~---~~P~~~~~w~~Lg~~~~~~g- 87 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIR---ANPQNSEQWALLGEYYLWRN- 87 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCC-
Confidence 467777777776443322211 10 0 11225566777766666552 12467888999999999999
Q ss_pred cccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECF-TKYCA--VTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLR 158 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~-ak~g~--~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ 158 (670)
+.++|+..|..-.+ +.| |...+..+-.++ ...|+ .++|.+++++..+..... +.+++.+-.
T Consensus 88 --~~~~A~~a~~~Al~----l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~---------~~al~~LA~ 152 (198)
T PRK10370 88 --DYDNALLAYRQALQ----LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANE---------VTALMLLAS 152 (198)
T ss_pred --CHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCC---------hhHHHHHHH
Confidence 78899999998876 456 456666666654 67777 599999999998864332 227888999
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCC
Q 005912 159 ALCREGRIIELLEALEAMAKDNQ 181 (670)
Q Consensus 159 ay~k~G~~eeA~~vf~~M~~~gi 181 (670)
.+.+.|++++|...|+.+.+..-
T Consensus 153 ~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 153 DAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCC
Confidence 99999999999999999988763
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.94 Score=50.00 Aligned_cols=155 Identities=14% Similarity=0.096 Sum_probs=121.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMA-TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 81 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~P-d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g 81 (670)
+-|+-.+.+++|...|+.-.+-+ | ....|+.+=+=|....+...|..-+++... =.+.|-..|-.|=++|.-.+
T Consensus 338 NYYSlr~eHEKAv~YFkRALkLN--p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd---i~p~DyRAWYGLGQaYeim~ 412 (559)
T KOG1155|consen 338 NYYSLRSEHEKAVMYFKRALKLN--PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD---INPRDYRAWYGLGQAYEIMK 412 (559)
T ss_pred hHHHHHHhHHHHHHHHHHHHhcC--cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh---cCchhHHHHhhhhHHHHHhc
Confidence 34667788999999998877643 3 345566666779999999999999988762 22557788888889998888
Q ss_pred CcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHH
Q 005912 82 SYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRAL 160 (670)
Q Consensus 82 ~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay 160 (670)
...-|+-.|++-.. ++| |...|.+|=.+|.+.+++++|...|......+-.. ++.|..|-..|
T Consensus 413 ---Mh~YaLyYfqkA~~----~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte---------~~~l~~LakLy 476 (559)
T KOG1155|consen 413 ---MHFYALYYFQKALE----LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE---------GSALVRLAKLY 476 (559)
T ss_pred ---chHHHHHHHHHHHh----cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc---------hHHHHHHHHHH
Confidence 78888888888765 666 57899999999999999999999998887754321 12788899999
Q ss_pred HHcCCHHHHHHHHHHHhh
Q 005912 161 CREGRIIELLEALEAMAK 178 (670)
Q Consensus 161 ~k~G~~eeA~~vf~~M~~ 178 (670)
-+.++.++|-..|+.-.+
T Consensus 477 e~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 477 EELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 999999999988876554
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.58 Score=54.68 Aligned_cols=192 Identities=11% Similarity=0.055 Sum_probs=110.3
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCC--------CCCHHHHHHHHH
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYM--------KPDTETYNCVIQ 75 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi--------~Pd~~tyn~LI~ 75 (670)
.|+-.|+.+.|.+-.+.++.. ..|..|-++|.+..+++-|.-.+..|.+ ..|. .|+ .+=.-+--
T Consensus 737 fyvtiG~MD~AfksI~~IkS~------~vW~nmA~McVkT~RLDVAkVClGhm~~-aRgaRAlR~a~q~~~-e~eakvAv 808 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIKSD------SVWDNMASMCVKTRRLDVAKVCLGHMKN-ARGARALRRAQQNGE-EDEAKVAV 808 (1416)
T ss_pred EEEEeccHHHHHHHHHHHhhh------HHHHHHHHHhhhhccccHHHHhhhhhhh-hhhHHHHHHHHhCCc-chhhHHHH
Confidence 466678888888877777643 7788899999988888888888877774 1111 121 00000111
Q ss_pred HHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHH
Q 005912 76 AYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL 155 (670)
Q Consensus 76 ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~ 155 (670)
--.+.| .+++|+.+|.+-++ |..|=.-|-..|.+++|.++-+.=-+-.+. +||--
T Consensus 809 LAieLg---MlEeA~~lYr~ckR-----------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr-----------~Tyy~ 863 (1416)
T KOG3617|consen 809 LAIELG---MLEEALILYRQCKR-----------YDLLNKLYQSQGMWSEAFEIAETKDRIHLR-----------NTYYN 863 (1416)
T ss_pred HHHHHh---hHHHHHHHHHHHHH-----------HHHHHHHHHhcccHHHHHHHHhhccceehh-----------hhHHH
Confidence 113445 67777777777765 344555566678888887775432221111 15666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHH---HHHHcCCcHHHHH
Q 005912 156 YLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIA---RYISEGGLTGERK 232 (670)
Q Consensus 156 LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~---~~~~~~g~~~~a~ 232 (670)
.-.-+-..++++.|++.|+.- +. +.. -..-++......+.+.++.--.+.... .|+-..|.+++|.
T Consensus 864 yA~~Lear~Di~~AleyyEK~---~~---haf-----ev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl 932 (1416)
T KOG3617|consen 864 YAKYLEARRDIEAALEYYEKA---GV---HAF-----EVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAAL 932 (1416)
T ss_pred HHHHHHhhccHHHHHHHHHhc---CC---hHH-----HHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHH
Confidence 666666677788888887754 21 110 012233333333333344444444332 5666677788887
Q ss_pred HHHHHhc
Q 005912 233 RWVPRRG 239 (670)
Q Consensus 233 ~lf~~m~ 239 (670)
.++....
T Consensus 933 ~~Y~~A~ 939 (1416)
T KOG3617|consen 933 SFYSSAK 939 (1416)
T ss_pred HHHHHhh
Confidence 7776654
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.98 Score=50.19 Aligned_cols=228 Identities=14% Similarity=0.105 Sum_probs=145.2
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCccc
Q 005912 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 85 (670)
Q Consensus 6 ~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~ 85 (670)
.-.|+.-.|..-|+......-.++. .|--+-.+|+...+.++....|+.... -..-.||+ |.-==+.+.-.+ +
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~-ldp~n~dv--YyHRgQm~flL~---q 409 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAED-LDPENPDV--YYHRGQMRFLLQ---Q 409 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHh-cCCCCCch--hHhHHHHHHHHH---H
Confidence 3467778888888888775444333 266677789999999999999998873 23334554 332222223333 5
Q ss_pred HHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcC
Q 005912 86 VQDVAELLGMMVEDHKRLQPN-VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREG 164 (670)
Q Consensus 86 ~~eAl~lf~eM~~~~~gi~Pd-~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G 164 (670)
.++|..=|++-++ +.|. .+.|.-+-.+.-+.+.+++++..|++.+++ .-.||.+||..-..+.-.+
T Consensus 410 ~e~A~aDF~Kai~----L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk---------FP~~~Evy~~fAeiLtDqq 476 (606)
T KOG0547|consen 410 YEEAIADFQKAIS----LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK---------FPNCPEVYNLFAEILTDQQ 476 (606)
T ss_pred HHHHHHHHHHHhh----cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------CCCCchHHHHHHHHHhhHH
Confidence 7888888988866 5563 455555555556899999999999999875 2234448999999999999
Q ss_pred CHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCCCC
Q 005912 165 RIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLD 244 (670)
Q Consensus 165 ~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi~ 244 (670)
+++.|.+.|+..+.--- .-.-++ ..-..++..++-+++ -.+.+..|..+.....+. .
T Consensus 477 qFd~A~k~YD~ai~LE~--~~~~~~--v~~~plV~Ka~l~~q-----------------wk~d~~~a~~Ll~KA~e~--D 533 (606)
T KOG0547|consen 477 QFDKAVKQYDKAIELEP--REHLII--VNAAPLVHKALLVLQ-----------------WKEDINQAENLLRKAIEL--D 533 (606)
T ss_pred hHHHHHHHHHHHHhhcc--cccccc--ccchhhhhhhHhhhc-----------------hhhhHHHHHHHHHHHHcc--C
Confidence 99999999997654321 000000 001122222221111 114566666666655432 2
Q ss_pred CCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005912 245 PDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQN 281 (670)
Q Consensus 245 Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~ 281 (670)
|.. ...| ++|...-.+.|++++|+++|++-..
T Consensus 534 pkc-e~A~----~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 534 PKC-EQAY----ETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred chH-HHHH----HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 322 1334 3444666889999999999987653
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=95.99 E-value=1.1 Score=45.20 Aligned_cols=180 Identities=14% Similarity=0.116 Sum_probs=113.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC-HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCH
Q 005912 29 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD-TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV 107 (670)
Q Consensus 29 d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd-~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~ 107 (670)
....+-.+...|.+.|+++.|...|++... ...-.|. ...|..+-.+|.+.| +.++|+..|++..+. .|+.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~-~~p~~~~~~~a~~~la~~~~~~~---~~~~A~~~~~~~l~~----~p~~ 103 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALES-RYPFSPYAEQAQLDLAYAYYKSG---DYAEAIAAADRFIRL----HPNH 103 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCchhHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHH----CcCC
Confidence 456677777889999999999999999873 1111121 246778888999999 899999999999872 2321
Q ss_pred ----HHHHHHHHHHHHc--------CCHHHHHHHHHHHHHccCCCccccc--------CCCCchHHHHHHHHHHHcCCHH
Q 005912 108 ----KTYALLVECFTKY--------CAVTEAIRHFRALQNYEGGTKVLHN--------EGNFGDPLSLYLRALCREGRII 167 (670)
Q Consensus 108 ----~Ty~~LL~a~ak~--------g~~d~A~~lf~~M~~~g~~~~v~~~--------~g~~pdtyn~LI~ay~k~G~~e 167 (670)
.++..+-.++.+. |+.+.|.+.|..+.+..+....... ........-.+-..|.+.|++.
T Consensus 104 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~ 183 (235)
T TIGR03302 104 PDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYV 183 (235)
T ss_pred CchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChH
Confidence 2344444445444 7789999999998875433211100 0000000113455678899999
Q ss_pred HHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccC
Q 005912 168 ELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKT 241 (670)
Q Consensus 168 eA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~ 241 (670)
+|...|....+..-. .|... -.+..+... +...|..++|..+++.+...
T Consensus 184 ~A~~~~~~al~~~p~-~~~~~---~a~~~l~~~---------------------~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 184 AAINRFETVVENYPD-TPATE---EALARLVEA---------------------YLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHCCC-CcchH---HHHHHHHHH---------------------HHHcCCHHHHHHHHHHHHhh
Confidence 999999998776421 22211 012222222 36677888888888877653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.98 E-value=2 Score=45.96 Aligned_cols=169 Identities=13% Similarity=0.102 Sum_probs=95.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHH--------------HHHHHHHHcCCCHHHH---
Q 005912 156 YLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWI--------------EPLQEEAELGYEIDYI--- 218 (670)
Q Consensus 156 LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~--------------~ll~~m~~~G~~pd~i--- 218 (670)
||--|.+.+++.+|..+.+++ . |.+|...+ ..+++.++. ..|+....++...|.|
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl---~-PttP~Eyi----lKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGR 362 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDL---D-PTTPYEYI----LKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGR 362 (557)
T ss_pred heeeecccccHHHHHHHHhhc---C-CCChHHHH----HHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccch
Confidence 444567788888888777655 1 33554443 444444332 2233334455544432
Q ss_pred ---HHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHH
Q 005912 219 ---ARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDY 295 (670)
Q Consensus 219 ---~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~ 295 (670)
..++--.-..++...+.+.+..+-..-|. +.|| +..+++-.|+..+|+++|-......++ +...|
T Consensus 363 QsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~--Fn~N-----~AQAk~atgny~eaEelf~~is~~~ik-----n~~~Y 430 (557)
T KOG3785|consen 363 QSMASYFFLSFQFDDVLTYLNSIESYFTNDDD--FNLN-----LAQAKLATGNYVEAEELFIRISGPEIK-----NKILY 430 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch--hhhH-----HHHHHHHhcChHHHHHHHhhhcChhhh-----hhHHH
Confidence 22222222355556666666555333333 6665 568889999999999999777655555 67788
Q ss_pred HHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHHhCCCCCH--HHHHHHHHHHHHhCChhhhh
Q 005912 296 VRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTD--GTRNVLYQRVQKARRINRSR 359 (670)
Q Consensus 296 ~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~Gip~d--~t~~~Ll~a~~~aG~~~eA~ 359 (670)
..++..|.-+.++| +.| |+.|....-|.+ .....+.+-|-+++.+--|-
T Consensus 431 ~s~LArCyi~nkkP------------~lA---W~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaa 481 (557)
T KOG3785|consen 431 KSMLARCYIRNKKP------------QLA---WDMMLKTNTPSERFSLLQLIANDCYKANEFYYAA 481 (557)
T ss_pred HHHHHHHHHhcCCc------------hHH---HHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887777655544 222 333334443433 22334455677777765544
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.77 E-value=1.3 Score=49.30 Aligned_cols=110 Identities=15% Similarity=0.165 Sum_probs=46.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC-HHHHHHHHHHHHHcCCcccH
Q 005912 8 AGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD-TETYNCVIQAYTRAESYDRV 86 (670)
Q Consensus 8 ~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd-~~tyn~LI~ay~k~g~~~~~ 86 (670)
.|.+++|+..++.+... .+-|++-.......+.+.++..+|.+.|+.+.. ..|+ ...+-.+=.+|.+.| +.
T Consensus 319 ~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~----l~P~~~~l~~~~a~all~~g---~~ 390 (484)
T COG4783 319 AGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALA----LDPNSPLLQLNLAQALLKGG---KP 390 (484)
T ss_pred hcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh----cCCCccHHHHHHHHHHHhcC---Ch
Confidence 34444444444444432 111222223333444444555555555444441 1233 333333444444444 34
Q ss_pred HHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005912 87 QDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIR 128 (670)
Q Consensus 87 ~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~ 128 (670)
.+|++++..-.. ...-|...|..|-.+|...|+..++..
T Consensus 391 ~eai~~L~~~~~---~~p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 391 QEAIRILNRYLF---NDPEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHHHHHHhh---cCCCCchHHHHHHHHHHHhCchHHHHH
Confidence 444444444432 222344444555555555444444433
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.24 Score=40.04 Aligned_cols=94 Identities=17% Similarity=0.141 Sum_probs=61.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHH
Q 005912 33 FNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 112 (670)
Q Consensus 33 yn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~ 112 (670)
+..+...|...|++++|..+|++... . ...+...|..+-..|...+ +.++|.+.|..... .. ..+..++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~---~~~~a~~~~~~~~~--~~-~~~~~~~~~ 73 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALE--L-DPDNADAYYNLAAAYYKLG---KYEEALEDYEKALE--LD-PDNAKAYYN 73 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHh--c-CCccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh--CC-CcchhHHHH
Confidence 44556666777888888888877652 1 1223366777777777777 67777777777655 21 223356677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 005912 113 LVECFTKYCAVTEAIRHFRALQN 135 (670)
Q Consensus 113 LL~a~ak~g~~d~A~~lf~~M~~ 135 (670)
+...+...|+.+.|...+....+
T Consensus 74 ~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 74 LGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHc
Confidence 77777778888888877776654
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.21 Score=40.32 Aligned_cols=95 Identities=19% Similarity=0.201 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCC
Q 005912 69 TYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEG 147 (670)
Q Consensus 69 tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g 147 (670)
+|..+...+.+.| +.++|+.+|.+..+ ..| +...+..+..++...++++.|.+.|..........
T Consensus 2 ~~~~~a~~~~~~~---~~~~A~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~------- 67 (100)
T cd00189 2 ALLNLGNLYYKLG---DYDEALEYYEKALE----LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN------- 67 (100)
T ss_pred HHHHHHHHHHHHh---cHHHHHHHHHHHHh----cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-------
Confidence 3566777888888 78899999999876 234 34778888889999999999999999887743221
Q ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 005912 148 NFGDPLSLYLRALCREGRIIELLEALEAMAKD 179 (670)
Q Consensus 148 ~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~ 179 (670)
+.++..+...|...|+.++|...|....+.
T Consensus 68 --~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 68 --AKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred --hhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 127888889999999999999999887654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.57 E-value=5 Score=48.15 Aligned_cols=289 Identities=11% Similarity=0.040 Sum_probs=147.4
Q ss_pred cCChHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHH-H--cCC
Q 005912 8 AGDHSNALEIAYEMEA--AGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYT-R--AES 82 (670)
Q Consensus 8 ~G~~~~Al~lf~~M~~--~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~-k--~g~ 82 (670)
.|++..|+.+|..... ....||+..-- =..+.++|+.+.|..-|.+.. +.|+..-++++.-.. . ..+
T Consensus 177 kkdY~~al~yyk~al~inp~~~aD~rIgi--g~Cf~kl~~~~~a~~a~~ral------qLdp~~v~alv~L~~~~l~~~d 248 (1018)
T KOG2002|consen 177 KKDYRGALKYYKKALRINPACKADVRIGI--GHCFWKLGMSEKALLAFERAL------QLDPTCVSALVALGEVDLNFND 248 (1018)
T ss_pred cccHHHHHHHHHHHHhcCcccCCCccchh--hhHHHhccchhhHHHHHHHHH------hcChhhHHHHHHHHHHHHHccc
Confidence 4667777777777432 23455542211 145567788888888887776 333333344433221 1 111
Q ss_pred cccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCR 162 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k 162 (670)
-+....++.++..--.. .+ -|.+..+.|-+-|.--|++..+..+...+...-..-.+. ...|--+=++|-.
T Consensus 249 ~~s~~~~~~ll~~ay~~-n~--~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~------aes~Y~~gRs~Ha 319 (1018)
T KOG2002|consen 249 SDSYKKGVQLLQRAYKE-NN--ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIK------AESFYQLGRSYHA 319 (1018)
T ss_pred hHHHHHHHHHHHHHHhh-cC--CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHH------HHHHHHHHHHHHh
Confidence 11233444444433220 12 245666777888888888888888887776642111111 1145567778888
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCC
Q 005912 163 EGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTP 242 (670)
Q Consensus 163 ~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~g 242 (670)
.|++++|+..|.+-.+.. ++..+ +.+-++. .++.+.|..+.+...|+.....
T Consensus 320 ~Gd~ekA~~yY~~s~k~~----~d~~~--l~~~Glg---------------------Qm~i~~~dle~s~~~fEkv~k~- 371 (1018)
T KOG2002|consen 320 QGDFEKAFKYYMESLKAD----NDNFV--LPLVGLG---------------------QMYIKRGDLEESKFCFEKVLKQ- 371 (1018)
T ss_pred hccHHHHHHHHHHHHccC----CCCcc--ccccchh---------------------HHHHHhchHHHHHHHHHHHHHh-
Confidence 888888888887765553 22211 1223333 2346677888888888887553
Q ss_pred CCCCcccchhhhhHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCccccccccc
Q 005912 243 LDPDAVGFIYSNPMETSFKQRCLED----GKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKA 318 (670)
Q Consensus 243 i~Pd~d~~ty~~LIe~lv~~~~~~G----~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~ 318 (670)
.|+- +--..++ -..|...+ ..++|..++.+-...-.. +...|..+-..+.. .+ .|..
T Consensus 372 -~p~~--~etm~iL---G~Lya~~~~~~~~~d~a~~~l~K~~~~~~~-----d~~a~l~laql~e~-~d--~~~s----- 432 (1018)
T KOG2002|consen 372 -LPNN--YETMKIL---GCLYAHSAKKQEKRDKASNVLGKVLEQTPV-----DSEAWLELAQLLEQ-TD--PWAS----- 432 (1018)
T ss_pred -Ccch--HHHHHHH---HhHHHhhhhhhHHHHHHHHHHHHHHhcccc-----cHHHHHHHHHHHHh-cC--hHHH-----
Confidence 2443 2222222 12333332 345565555554433321 22222222111111 11 1111
Q ss_pred CCHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhCChhhhhcCC
Q 005912 319 ASKMVVSELKEELDAQGL-PTDGTRNVLYQRVQKARRINRSRGRP 362 (670)
Q Consensus 319 g~~~~A~~l~~~M~~~Gi-p~d~t~~~Ll~a~~~aG~~~eA~~~~ 362 (670)
+.--....+.|...|- +|....|.+-....+.|.+.+|...+
T Consensus 433 --L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f 475 (1018)
T KOG2002|consen 433 --LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHF 475 (1018)
T ss_pred --HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHH
Confidence 1111112234444444 55566777777777777777776543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.35 Score=42.55 Aligned_cols=103 Identities=10% Similarity=-0.013 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHH
Q 005912 32 HFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYA 111 (670)
Q Consensus 32 tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~ 111 (670)
++-.+...+.+.|++++|...|+.+.....+-......+..+...+.+.| +.+.|+..|........+-......+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQG---KYADAAKAFLAVVKKYPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence 34556667777888888888888876310111111345666777788888 677888888877652111111234566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcc
Q 005912 112 LLVECFTKYCAVTEAIRHFRALQNYE 137 (670)
Q Consensus 112 ~LL~a~ak~g~~d~A~~lf~~M~~~g 137 (670)
.+..++.+.|+.+.|.+.+..+....
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 66677778888888888888877654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=95.47 E-value=1.2 Score=41.77 Aligned_cols=96 Identities=16% Similarity=0.026 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCC
Q 005912 69 TYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEG 147 (670)
Q Consensus 69 tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g 147 (670)
.+..+-..+.+.| +.++|...|..... +.| +...|..+-.+|...|++++|...|.........
T Consensus 26 ~~~~~g~~~~~~g---~~~~A~~~~~~al~----~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-------- 90 (144)
T PRK15359 26 TVYASGYASWQEG---DYSRAVIDFSWLVM----AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-------- 90 (144)
T ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHH----cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--------
Confidence 3555666777888 78888888888866 344 5677788888888999999999999988874322
Q ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 148 NFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 148 ~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
.++++..+-.+|.+.|++++|...|+...+..
T Consensus 91 -~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 91 -HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred -CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 12277788888889999999999999877654
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.27 Score=44.91 Aligned_cols=101 Identities=9% Similarity=0.073 Sum_probs=79.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHH
Q 005912 29 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK 108 (670)
Q Consensus 29 d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~ 108 (670)
+......+...|.+.|++++|...|+... ..+ ..+...|..+-..|.+.| +..+|...|..... .. ..+..
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~--~~~-p~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~--~~-p~~~~ 86 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLA--AYD-PYNSRYWLGLAACCQMLK---EYEEAIDAYALAAA--LD-PDDPR 86 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHH--HhC-CCcHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh--cC-CCChH
Confidence 34556677788889999999999999987 222 346788888888999999 78899999998765 22 33567
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHccC
Q 005912 109 TYALLVECFTKYCAVTEAIRHFRALQNYEG 138 (670)
Q Consensus 109 Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~ 138 (670)
+|..+-.+|...|+.+.|...|....+...
T Consensus 87 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 87 PYFHAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 777788899999999999999998887654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=95.36 E-value=1.3 Score=51.23 Aligned_cols=150 Identities=15% Similarity=0.153 Sum_probs=92.6
Q ss_pred cHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcC
Q 005912 85 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREG 164 (670)
Q Consensus 85 ~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G 164 (670)
.+..|+.+++.++. .+. -.--|..+..-|+..|+++.|.++|-+.- .++--|.+|.+.|
T Consensus 747 ew~kai~ildniqd--qk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----------------~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 747 EWKKAISILDNIQD--QKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-----------------LFKDAIDMYGKAG 805 (1636)
T ss_pred hhhhhHhHHHHhhh--hcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----------------hhHHHHHHHhccc
Confidence 35566677776655 222 23346778888899999999999887532 5788999999999
Q ss_pred CHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCC------------CHHHHHHHHHcCCcHHHHH
Q 005912 165 RIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGY------------EIDYIARYISEGGLTGERK 232 (670)
Q Consensus 165 ~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~------------~pd~i~~~~~~~g~~~~a~ 232 (670)
+++.|+++-++... |...+ ..++..-+.|-+.|. .|+.-+.+|.+-|+.+...
T Consensus 806 kw~da~kla~e~~~------~e~t~---------~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmi 870 (1636)
T KOG3616|consen 806 KWEDAFKLAEECHG------PEATI---------SLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMI 870 (1636)
T ss_pred cHHHHHHHHHHhcC------chhHH---------HHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHH
Confidence 99999998776532 33222 122222233444333 2666777888888888777
Q ss_pred HHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 005912 233 RWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTL 279 (670)
Q Consensus 233 ~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M 279 (670)
++...-. |+. .+-+-. .+.+.|-..|++..|...|-+.
T Consensus 871 rlv~k~h-----~d~--l~dt~~--~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 871 RLVEKHH-----GDH--LHDTHK--HFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred HHHHHhC-----hhh--hhHHHH--HHHHHHHhccChhHHHHHHHhh
Confidence 7665432 111 211111 1335556677777777666544
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=95.35 E-value=8.5 Score=45.86 Aligned_cols=314 Identities=11% Similarity=0.010 Sum_probs=196.0
Q ss_pred HHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGR-MATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv-~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
.|-+.|+.++++..+ |..... +-|..-|-.+-....+.|+++.|.-.|.+..+ .. .++...+--=+.-|-+.|
T Consensus 182 IyEqrGd~eK~l~~~--llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~--~~-p~n~~~~~ers~L~~~~G- 255 (895)
T KOG2076|consen 182 IYEQRGDIEKALNFW--LLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQ--AN-PSNWELIYERSSLYQKTG- 255 (895)
T ss_pred HHHHcccHHHHHHHH--HHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHh--cC-CcchHHHHHHHHHHHHhC-
Confidence 466789999998775 333333 34677888888888899999999999999873 11 233333333455677889
Q ss_pred cccHHHHHHHHHHhHhccCCCCCCHHHHH----HHHHHHHHcCCHHHHHHHHHHHHHccCC-CcccccCCCCchHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQPNVKTYA----LLVECFTKYCAVTEAIRHFRALQNYEGG-TKVLHNEGNFGDPLSLYL 157 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~----~LL~a~ak~g~~d~A~~lf~~M~~~g~~-~~v~~~~g~~pdtyn~LI 157 (670)
+...|++-|.+|.+ ..-..|..-+- .++..|...+..+.|.+.+......+.. .... .+|+++
T Consensus 256 --~~~~Am~~f~~l~~--~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~e--------d~ni~a 323 (895)
T KOG2076|consen 256 --DLKRAMETFLQLLQ--LDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLE--------DLNILA 323 (895)
T ss_pred --hHHHHHHHHHHHHh--hCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccccccc--------HHHHHH
Confidence 78899999999987 22222333333 3455566777778888888776653221 1111 799999
Q ss_pred HHHHHcCCHHHHHHHHHHHhhCCCC-------------CCCchHH-----HHhHHHH-HHHHHH----------HHHHHH
Q 005912 158 RALCREGRIIELLEALEAMAKDNQP-------------VPPRAMI-----LSRKYRT-LVSSWI----------EPLQEE 208 (670)
Q Consensus 158 ~ay~k~G~~eeA~~vf~~M~~~gi~-------------i~p~~~i-----~~~ty~~-ll~a~~----------~ll~~m 208 (670)
..|.+....+.|......+..+... ..++.+. .+|.... -+..|+ -+++..
T Consensus 324 el~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l 403 (895)
T KOG2076|consen 324 ELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFL 403 (895)
T ss_pred HHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHH
Confidence 9999999999999988888662111 0111110 0000111 011111 134445
Q ss_pred HHcCCCHH----H---HHHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005912 209 AELGYEID----Y---IARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQN 281 (670)
Q Consensus 209 ~~~G~~pd----~---i~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~ 281 (670)
.+..+.|. . +..++...|...+|..+|..+.....--+ .+.|-.+ ..+|-..|..+.|.+.|.....
T Consensus 404 ~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~--~~vw~~~----a~c~~~l~e~e~A~e~y~kvl~ 477 (895)
T KOG2076|consen 404 VEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN--AFVWYKL----ARCYMELGEYEEAIEFYEKVLI 477 (895)
T ss_pred HHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc--hhhhHHH----HHHHHHHhhHHHHHHHHHHHHh
Confidence 55554433 2 34678899999999999999977533233 3666444 3778889999999999998875
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHH--------hCCCCCH-HHHHHHHHHHHHh
Q 005912 282 EGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELD--------AQGLPTD-GTRNVLYQRVQKA 352 (670)
Q Consensus 282 ~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~--------~~Gip~d-~t~~~Ll~a~~~a 352 (670)
.. |.......-+..+.. +.|..++|.+.++.|. ..+.++. ...-...+.+...
T Consensus 478 ~~------p~~~D~Ri~Lasl~~------------~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~ 539 (895)
T KOG2076|consen 478 LA------PDNLDARITLASLYQ------------QLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV 539 (895)
T ss_pred cC------CCchhhhhhHHHHHH------------hcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence 43 333333333322222 4566778888887743 3344333 3333455667778
Q ss_pred CChhhhh
Q 005912 353 RRINRSR 359 (670)
Q Consensus 353 G~~~eA~ 359 (670)
|+.++..
T Consensus 540 gk~E~fi 546 (895)
T KOG2076|consen 540 GKREEFI 546 (895)
T ss_pred hhHHHHH
Confidence 8877754
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.30 E-value=2.9 Score=43.31 Aligned_cols=146 Identities=14% Similarity=0.041 Sum_probs=101.4
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHh
Q 005912 17 IAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMM 96 (670)
Q Consensus 17 lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM 96 (670)
+.+.+.......|......-...|+..|++++|++...... +....-.=+..+.+.. +.+-|.+.++.|
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--------~lE~~Al~VqI~lk~~---r~d~A~~~lk~m 163 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--------NLEAAALNVQILLKMH---RFDLAEKELKKM 163 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--------hHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 34444444444444444444556889999999999987743 2333333344455666 788899999999
Q ss_pred HhccCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHH
Q 005912 97 VEDHKRLQPNVKTYALLVECFTK----YCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEA 172 (670)
Q Consensus 97 ~~~~~gi~Pd~~Ty~~LL~a~ak----~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~v 172 (670)
.+ --+..|.+-|-.++.+ .+.+..|.-+|++|..+- ...|.+-|-+..++...|++++|..+
T Consensus 164 q~-----ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~---------~~T~~llnG~Av~~l~~~~~eeAe~l 229 (299)
T KOG3081|consen 164 QQ-----IDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT---------PPTPLLLNGQAVCHLQLGRYEEAESL 229 (299)
T ss_pred Hc-----cchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc---------CCChHHHccHHHHHHHhcCHHHHHHH
Confidence 87 2466788777777764 567899999999998742 22222777888888999999999999
Q ss_pred HHHHhhCCCCCCCchH
Q 005912 173 LEAMAKDNQPVPPRAM 188 (670)
Q Consensus 173 f~~M~~~gi~i~p~~~ 188 (670)
+++...+.-. .|.+.
T Consensus 230 L~eaL~kd~~-dpetL 244 (299)
T KOG3081|consen 230 LEEALDKDAK-DPETL 244 (299)
T ss_pred HHHHHhccCC-CHHHH
Confidence 9998887643 45543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.44 Score=41.89 Aligned_cols=103 Identities=14% Similarity=0.040 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCC
Q 005912 69 TYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGN 148 (670)
Q Consensus 69 tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~ 148 (670)
+|-.+...+.+.| +.++|...|..+...+.+-......+..+..++.+.|+++.|...|+.+.........
T Consensus 4 ~~~~~~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~------ 74 (119)
T TIGR02795 4 AYYDAALLVLKAG---DYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPK------ 74 (119)
T ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCc------
Confidence 4566777788888 7889999999997621111111346667888999999999999999998874322111
Q ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 149 FGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 149 ~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
.+.++..+-.+|.+.|+.++|...|+...+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 75 APDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred ccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 12267778888999999999999999998875
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.05 E-value=3.2 Score=42.76 Aligned_cols=127 Identities=13% Similarity=0.062 Sum_probs=98.0
Q ss_pred HHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHH
Q 005912 36 LLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 115 (670)
Q Consensus 36 LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~ 115 (670)
+-..|--.|+-+.+..+..... .....|...-+..++...++| +...|...|.+... .-.||+.+|+.+=-
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~---~~~~~d~~ll~~~gk~~~~~g---~~~~A~~~~rkA~~---l~p~d~~~~~~lga 142 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSA---IAYPKDRELLAAQGKNQIRNG---NFGEAVSVLRKAAR---LAPTDWEAWNLLGA 142 (257)
T ss_pred HHHHHHhcccccchHHHHhhhh---ccCcccHHHHHHHHHHHHHhc---chHHHHHHHHHHhc---cCCCChhhhhHHHH
Confidence 3444445566666666555543 223456667777999999999 78899999999875 44678999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 116 CFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 116 a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
+|-+.|+++.|..-|.+..+.- +..|..+|.|--.|.-.|+++.|..++..-...+
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~---------~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELA---------PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhc---------cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 9999999999999999988752 2233378889889999999999999999887765
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.04 E-value=1.4 Score=45.37 Aligned_cols=129 Identities=12% Similarity=-0.014 Sum_probs=104.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC-H
Q 005912 29 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN-V 107 (670)
Q Consensus 29 d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd-~ 107 (670)
+....+.+.....+.|++..|..+|.+.. ..-.+|..+||.+=-+|-+.| +.++|-.-|.+-.+ +.|+ .
T Consensus 99 d~~ll~~~gk~~~~~g~~~~A~~~~rkA~---~l~p~d~~~~~~lgaaldq~G---r~~~Ar~ay~qAl~----L~~~~p 168 (257)
T COG5010 99 DRELLAAQGKNQIRNGNFGEAVSVLRKAA---RLAPTDWEAWNLLGAALDQLG---RFDEARRAYRQALE----LAPNEP 168 (257)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHh---ccCCCChhhhhHHHHHHHHcc---ChhHHHHHHHHHHH----hccCCc
Confidence 45566778888999999999999999987 334789999999999999999 77788888888766 4554 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005912 108 KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM 176 (670)
Q Consensus 108 ~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M 176 (670)
..+|.|-..|.-.|+.+.|..++......+..... +-..|.-.....|++++|..+...-
T Consensus 169 ~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~---------v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 169 SIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSR---------VRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchH---------HHHHHHHHHhhcCChHHHHhhcccc
Confidence 66788888999999999999999988765443322 4567888889999999999887654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.96 E-value=1 Score=49.37 Aligned_cols=98 Identities=11% Similarity=0.090 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCccccc
Q 005912 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHN 145 (670)
Q Consensus 66 d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~ 145 (670)
|....+-|-.-|-+.| +-..|+..+-+--+ -+.-|..|..-|-.-|....-.+++...|+... -+.|+.+
T Consensus 591 dp~ilskl~dlydqeg---dksqafq~~ydsyr---yfp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~-- 660 (840)
T KOG2003|consen 591 DPAILSKLADLYDQEG---DKSQAFQCHYDSYR---YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQS-- 660 (840)
T ss_pred CHHHHHHHHHHhhccc---chhhhhhhhhhccc---ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHH--
Confidence 3444444444444555 33444444433221 222344444444444444444455555554331 2233333
Q ss_pred CCCCchHHHHHHHHH-HHcCCHHHHHHHHHHHhhC
Q 005912 146 EGNFGDPLSLYLRAL-CREGRIIELLEALEAMAKD 179 (670)
Q Consensus 146 ~g~~pdtyn~LI~ay-~k~G~~eeA~~vf~~M~~~ 179 (670)
-|-.||..| -|.|++..|+.+++...++
T Consensus 661 ------kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 661 ------KWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred ------HHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 677777655 4678888888888887665
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=94.94 E-value=4.2 Score=49.34 Aligned_cols=241 Identities=7% Similarity=-0.034 Sum_probs=118.2
Q ss_pred CHHHHHhcCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCH----------
Q 005912 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTF---HFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT---------- 67 (670)
Q Consensus 1 LI~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~---tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~---------- 67 (670)
||..|-..+++++|.++.+.-.+. .|+.. -|..+ .|.+.++...+..+ .+.. -+..+.
T Consensus 37 Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~--l~~q~~~~~~~~lv--~~l~---~~~~~~~~~~ve~~~~ 107 (906)
T PRK14720 37 LIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGI--LSLSRRPLNDSNLL--NLID---SFSQNLKWAIVEHICD 107 (906)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHH--HHHhhcchhhhhhh--hhhh---hcccccchhHHHHHHH
Confidence 455666777777777777644332 33332 22333 44455555555444 2220 011111
Q ss_pred ---------HHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccC
Q 005912 68 ---------ETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEG 138 (670)
Q Consensus 68 ---------~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~ 138 (670)
..+-.|-.+|-+.| +.++|..+|+++.+ .. .-|..+.|.+-..|+.. ++++|++++.....
T Consensus 108 ~i~~~~~~k~Al~~LA~~Ydk~g---~~~ka~~~yer~L~--~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~--- 177 (906)
T PRK14720 108 KILLYGENKLALRTLAEAYAKLN---ENKKLKGVWERLVK--AD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIY--- 177 (906)
T ss_pred HHHhhhhhhHHHHHHHHHHHHcC---ChHHHHHHHHHHHh--cC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH---
Confidence 23344445555556 55666666666665 22 22455556666666666 66666665554433
Q ss_pred CCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHH---cCCCH
Q 005912 139 GTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAE---LGYEI 215 (670)
Q Consensus 139 ~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~---~G~~p 215 (670)
.|...+++..+.++|.++...... .-+. +..+++.+.. .|.-.
T Consensus 178 --------------------~~i~~kq~~~~~e~W~k~~~~~~~-d~d~-------------f~~i~~ki~~~~~~~~~~ 223 (906)
T PRK14720 178 --------------------RFIKKKQYVGIEEIWSKLVHYNSD-DFDF-------------FLRIERKVLGHREFTRLV 223 (906)
T ss_pred --------------------HHHhhhcchHHHHHHHHHHhcCcc-cchH-------------HHHHHHHHHhhhccchhH
Confidence 245555666666666666655421 1111 1111111111 12222
Q ss_pred HH---HHHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCH
Q 005912 216 DY---IARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSE 292 (670)
Q Consensus 216 d~---i~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~ 292 (670)
+. +-.+|......+.+..+++.+.++- |+ +++...-++.+....|....+++++ ++..|+. -+.
T Consensus 224 ~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~--~~-n~~a~~~l~~~y~~kY~~~~~~ee~------l~~s~l~----~~~ 290 (906)
T PRK14720 224 GLLEDLYEPYKALEDWDEVIYILKKILEHD--NK-NNKAREELIRFYKEKYKDHSLLEDY------LKMSDIG----NNR 290 (906)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHhcC--Cc-chhhHHHHHHHHHHHccCcchHHHH------HHHhccc----cCC
Confidence 22 2255778888889999999987652 22 3455555554333333333333332 2334554 223
Q ss_pred HHHHHHHHHHHHccC
Q 005912 293 SDYVRVEERLKKLIK 307 (670)
Q Consensus 293 ~~~~~~l~~l~k~~~ 307 (670)
..+..++..|.+...
T Consensus 291 ~~~~~~i~~fek~i~ 305 (906)
T PRK14720 291 KPVKDCIADFEKNIV 305 (906)
T ss_pred ccHHHHHHHHHHHee
Confidence 444555555555433
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.92 E-value=1.2 Score=51.62 Aligned_cols=232 Identities=15% Similarity=0.080 Sum_probs=151.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHH
Q 005912 34 NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALL 113 (670)
Q Consensus 34 n~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~L 113 (670)
..+-..+.+.|....|..+|++.. .|.-+|-+|+..| +...|-.+..+-.+ -.||..-|.++
T Consensus 402 ~~laell~slGitksAl~I~Erle-----------mw~~vi~CY~~lg---~~~kaeei~~q~le----k~~d~~lyc~L 463 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE-----------MWDPVILCYLLLG---QHGKAEEINRQELE----KDPDPRLYCLL 463 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH-----------HHHHHHHHHHHhc---ccchHHHHHHHHhc----CCCcchhHHHh
Confidence 566677889999999999999887 4888999999999 67777777776654 35888999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhH
Q 005912 114 VECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRK 193 (670)
Q Consensus 114 L~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~t 193 (670)
....-....+++|.++++....+-- + .++.++ .+.++++++.+.|+.-.+-+. +.+.+
T Consensus 464 GDv~~d~s~yEkawElsn~~sarA~------r------~~~~~~---~~~~~fs~~~~hle~sl~~np-lq~~~------ 521 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISARAQ------R------SLALLI---LSNKDFSEADKHLERSLEINP-LQLGT------ 521 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHHHH------H------hhcccc---ccchhHHHHHHHHHHHhhcCc-cchhH------
Confidence 9888888889999999987664300 0 122221 227889999999986544431 23332
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHH
Q 005912 194 YRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHR 273 (670)
Q Consensus 194 y~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~ 273 (670)
|-++--.+ -+.+....+...|..... ..|+. --.||++= .+|.+.|+..+|.
T Consensus 522 wf~~G~~A---------------------Lqlek~q~av~aF~rcvt--L~Pd~-~eaWnNls----~ayi~~~~k~ra~ 573 (777)
T KOG1128|consen 522 WFGLGCAA---------------------LQLEKEQAAVKAFHRCVT--LEPDN-AEAWNNLS----TAYIRLKKKKRAF 573 (777)
T ss_pred HHhccHHH---------------------HHHhhhHHHHHHHHHHhh--cCCCc-hhhhhhhh----HHHHHHhhhHHHH
Confidence 22222112 233455666666665533 33543 24687665 8899999999999
Q ss_pred HHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHH
Q 005912 274 KLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGL--PTDGTRNVLYQRVQK 351 (670)
Q Consensus 274 ~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~Gi--p~d~t~~~Ll~a~~~ 351 (670)
..+++-.+.+.. +...+.. |..+.-+.|.+++|.+.+.+|..... ..+.+...++.....
T Consensus 574 ~~l~EAlKcn~~-----~w~iWEN-------------ymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 574 RKLKEALKCNYQ-----HWQIWEN-------------YMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVLE 635 (777)
T ss_pred HHHHHHhhcCCC-----CCeeeec-------------hhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHh
Confidence 999988776644 1111111 22222366779999999988876554 333455555554443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.56 Score=54.01 Aligned_cols=137 Identities=14% Similarity=0.147 Sum_probs=95.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
.+-.....+.+|+.+++.+...... .--|.-+-+.|+..|+++.|.++|-+-. .++--|..|.++|
T Consensus 740 eaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~-----------~~~dai~my~k~~- 805 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEAD-----------LFKDAIDMYGKAG- 805 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcc-----------hhHHHHHHHhccc-
Confidence 3445566777788887777665332 2336677788888999999999886554 2566788899999
Q ss_pred cccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCR 162 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k 162 (670)
++..|+++-.+.. |.......|-+-..-+-+.|.+.+|.+++--+.. =..-|.+|-+
T Consensus 806 --kw~da~kla~e~~----~~e~t~~~yiakaedldehgkf~eaeqlyiti~~-----------------p~~aiqmydk 862 (1636)
T KOG3616|consen 806 --KWEDAFKLAEECH----GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE-----------------PDKAIQMYDK 862 (1636)
T ss_pred --cHHHHHHHHHHhc----CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC-----------------chHHHHHHHh
Confidence 7888888776653 3344556666666666778888888877643322 1246788888
Q ss_pred cCCHHHHHHHHHHH
Q 005912 163 EGRIIELLEALEAM 176 (670)
Q Consensus 163 ~G~~eeA~~vf~~M 176 (670)
.|..+...++.+.-
T Consensus 863 ~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 863 HGLDDDMIRLVEKH 876 (1636)
T ss_pred hCcchHHHHHHHHh
Confidence 88888888887754
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.36 Score=44.56 Aligned_cols=90 Identities=6% Similarity=0.056 Sum_probs=72.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchh-------------CCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHH
Q 005912 29 TTFHFNHLLSCQATCGIPEVAFATFENMEY-------------GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGM 95 (670)
Q Consensus 29 d~~tyn~LI~~yak~G~~e~A~~lf~~M~~-------------~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~e 95 (670)
|..++.++|.++++.|+++....+.+..=. ....+.|+..+-.+++.+|+.+| +...|+++.+.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~---~i~~al~~vd~ 77 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNG---DIFSALKLVDF 77 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcc---cHHHHHHHHHH
Confidence 457889999999999999999888876410 14567899999999999999999 78899999998
Q ss_pred hHhccCCCCCCHHHHHHHHHHHHHcCC
Q 005912 96 MVEDHKRLQPNVKTYALLVECFTKYCA 122 (670)
Q Consensus 96 M~~~~~gi~Pd~~Ty~~LL~a~ak~g~ 122 (670)
..+. .++..+..+|..|+.=+....+
T Consensus 78 fs~~-Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 78 FSRK-YPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HHHH-cCCCCCHHHHHHHHHHHHHhcC
Confidence 8765 6688889999999876654444
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.54 Score=42.84 Aligned_cols=101 Identities=14% Similarity=0.086 Sum_probs=80.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
..|.+.|++++|.+.|+.....+ ..+...|..+-..|.+.|+++.|..+|+... .. ...+..+|..+-..|...|
T Consensus 25 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~--~~-~p~~~~~~~~la~~~~~~g- 99 (135)
T TIGR02552 25 YNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAA--AL-DPDDPRPYFHAAECLLALG- 99 (135)
T ss_pred HHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hc-CCCChHHHHHHHHHHHHcC-
Confidence 45778999999999999988753 3477888888899999999999999999876 22 2446777888888999999
Q ss_pred cccHHHHHHHHHHhHhccCCCCCCHHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 114 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL 114 (670)
+.++|+..|....+ +.|+...+.-+.
T Consensus 100 --~~~~A~~~~~~al~----~~p~~~~~~~~~ 125 (135)
T TIGR02552 100 --EPESALKALDLAIE----ICGENPEYSELK 125 (135)
T ss_pred --CHHHHHHHHHHHHH----hccccchHHHHH
Confidence 88999999998876 456665544433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.63 Score=43.74 Aligned_cols=108 Identities=8% Similarity=-0.034 Sum_probs=85.3
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHH
Q 005912 16 EIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGM 95 (670)
Q Consensus 16 ~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~e 95 (670)
.+|++-.+ +.|+ .+..+-..+...|++++|...|+.... .. ..+...|..+-..+.+.| +.++|+..|..
T Consensus 14 ~~~~~al~--~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~--~~-P~~~~a~~~lg~~~~~~g---~~~~A~~~y~~ 83 (144)
T PRK15359 14 DILKQLLS--VDPE--TVYASGYASWQEGDYSRAVIDFSWLVM--AQ-PWSWRAHIALAGTWMMLK---EYTTAINFYGH 83 (144)
T ss_pred HHHHHHHH--cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHH--cC-CCcHHHHHHHHHHHHHHh---hHHHHHHHHHH
Confidence 34444443 2344 355567788899999999999999872 21 347888999999999999 89999999999
Q ss_pred hHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcc
Q 005912 96 MVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYE 137 (670)
Q Consensus 96 M~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g 137 (670)
... +.| +..++..+-.++...|+.++|...|....+..
T Consensus 84 Al~----l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 84 ALM----LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHh----cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 987 344 67888888899999999999999999988753
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.74 E-value=5.5 Score=40.50 Aligned_cols=194 Identities=14% Similarity=0.030 Sum_probs=133.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC-HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC-HHHH
Q 005912 33 FNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD-TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN-VKTY 110 (670)
Q Consensus 33 yn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd-~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd-~~Ty 110 (670)
.--|--+|...|+...|..-+++..+ +.|+ .-+|..+-..|-+.| ..+.|.+-|+.-.. +.|+ ..+.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~----~DPs~~~a~~~~A~~Yq~~G---e~~~A~e~YrkAls----l~p~~GdVL 106 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALE----HDPSYYLAHLVRAHYYQKLG---ENDLADESYRKALS----LAPNNGDVL 106 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHcC---ChhhHHHHHHHHHh----cCCCccchh
Confidence 34455679999999999999998773 2444 578899999999999 78888888988765 4564 3455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHH
Q 005912 111 ALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMIL 190 (670)
Q Consensus 111 ~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~ 190 (670)
|.-=.-+|..|.+++|.+.|+...... .|+..++||..+--+..+.|+.+.|...|..-.+.+-..++.
T Consensus 107 NNYG~FLC~qg~~~eA~q~F~~Al~~P-------~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~---- 175 (250)
T COG3063 107 NNYGAFLCAQGRPEEAMQQFERALADP-------AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPA---- 175 (250)
T ss_pred hhhhHHHHhCCChHHHHHHHHHHHhCC-------CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChH----
Confidence 665566688999999999999987742 266666699999888899999999999999887765432222
Q ss_pred HhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHH
Q 005912 191 SRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKK 270 (670)
Q Consensus 191 ~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e 270 (670)
.-.+. ......|....|+.+++.....+. ++. -+..-.| ..--+.|+..
T Consensus 176 ---~l~~a---------------------~~~~~~~~y~~Ar~~~~~~~~~~~-~~A--~sL~L~i----riak~~gd~~ 224 (250)
T COG3063 176 ---LLELA---------------------RLHYKAGDYAPARLYLERYQQRGG-AQA--ESLLLGI----RIAKRLGDRA 224 (250)
T ss_pred ---HHHHH---------------------HHHHhcccchHHHHHHHHHHhccc-ccH--HHHHHHH----HHHHHhccHH
Confidence 11111 112345567778888887766554 555 2221112 3334566666
Q ss_pred HHHHHHHHH
Q 005912 271 YHRKLLRTL 279 (670)
Q Consensus 271 ~A~~Lf~~M 279 (670)
-|.+.=..+
T Consensus 225 ~a~~Y~~qL 233 (250)
T COG3063 225 AAQRYQAQL 233 (250)
T ss_pred HHHHHHHHH
Confidence 655544333
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.67 E-value=11 Score=43.57 Aligned_cols=31 Identities=10% Similarity=-0.009 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC
Q 005912 152 PLSLYLRALCREGRIIELLEALEAMAKDNQP 182 (670)
Q Consensus 152 tyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~ 182 (670)
.|++|-+-|.+.|.++.|..+|++-.+.-..
T Consensus 250 Lw~SLAdYYIr~g~~ekarDvyeeai~~v~t 280 (835)
T KOG2047|consen 250 LWCSLADYYIRSGLFEKARDVYEEAIQTVMT 280 (835)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhhee
Confidence 8999999999999999999999987666443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.64 E-value=14 Score=44.60 Aligned_cols=251 Identities=11% Similarity=0.020 Sum_probs=147.5
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---Hc---CChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHH
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQA---TC---GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAY 77 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~ya---k~---G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay 77 (670)
++.+.|+.+.|+.-|....+- -| ..-++++...- .. -.+..+..++...-. .. .-|++.-|.|-+-|
T Consensus 208 Cf~kl~~~~~a~~a~~ralqL--dp--~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~-~n--~~nP~~l~~LAn~f 280 (1018)
T KOG2002|consen 208 CFWKLGMSEKALLAFERALQL--DP--TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYK-EN--NENPVALNHLANHF 280 (1018)
T ss_pred HHHhccchhhHHHHHHHHHhc--Ch--hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHh-hc--CCCcHHHHHHHHHH
Confidence 566889999999999887764 34 33333333221 11 234556666655442 22 33566778888899
Q ss_pred HHcCCcccHHHHHHHHHHhHhccCCCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHH
Q 005912 78 TRAESYDRVQDVAELLGMMVEDHKRLQ-P-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL 155 (670)
Q Consensus 78 ~k~g~~~~~~eAl~lf~eM~~~~~gi~-P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~ 155 (670)
.-.| +...++.+...+.. .... + -...|--+-.+|-..|+++.|...|-+..+......+. .+--
T Consensus 281 yfK~---dy~~v~~la~~ai~--~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l--------~~~G 347 (1018)
T KOG2002|consen 281 YFKK---DYERVWHLAEHAIK--NTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVL--------PLVG 347 (1018)
T ss_pred hhcc---cHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccc--------cccc
Confidence 9999 67788888888766 2211 1 12346677788889999999999998877654333233 3445
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchH-HHHhHHHHHH------HHHHHHHHHHHHcC-CCHHH---HHHHHHc
Q 005912 156 YLRALCREGRIIELLEALEAMAKDNQPVPPRAM-ILSRKYRTLV------SSWIEPLQEEAELG-YEIDY---IARYISE 224 (670)
Q Consensus 156 LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~-i~~~ty~~ll------~a~~~ll~~m~~~G-~~pd~---i~~~~~~ 224 (670)
|-.+|.+.|.++.+...|+...+.... .+.+| +++..|...- +.+..++....+.- ...+. +..++-.
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ 426 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh
Confidence 889999999999999999998887531 22222 3444343321 22222222211111 00111 1122222
Q ss_pred CCcHHHHHHHHHHh----ccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005912 225 GGLTGERKRWVPRR----GKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNE 282 (670)
Q Consensus 225 ~g~~~~a~~lf~~m----~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~ 282 (670)
. .......++... ...+-.+.+ ...|+ +...+...|++++|...|..-...
T Consensus 427 ~-d~~~sL~~~~~A~d~L~~~~~~ip~--E~LNN----vaslhf~~g~~~~A~~~f~~A~~~ 481 (1018)
T KOG2002|consen 427 T-DPWASLDAYGNALDILESKGKQIPP--EVLNN----VASLHFRLGNIEKALEHFKSALGK 481 (1018)
T ss_pred c-ChHHHHHHHHHHHHHHHHcCCCCCH--HHHHh----HHHHHHHhcChHHHHHHHHHHhhh
Confidence 2 333334443332 233322333 33443 447789999999999999987765
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.61 E-value=1.3 Score=47.37 Aligned_cols=156 Identities=15% Similarity=0.155 Sum_probs=102.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHH-HHHHHcCCcccH
Q 005912 8 AGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVI-QAYTRAESYDRV 86 (670)
Q Consensus 8 ~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI-~ay~k~g~~~~~ 86 (670)
.-++++++..+...+..=.--|.+.|| +-.+++-.|++.+|.++|-++. ...+ .|-.+|-+|+ .+|.+++ +.
T Consensus 372 ~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is--~~~i-kn~~~Y~s~LArCyi~nk---kP 444 (557)
T KOG3785|consen 372 SFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRIS--GPEI-KNKILYKSMLARCYIRNK---KP 444 (557)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhc--Chhh-hhhHHHHHHHHHHHHhcC---Cc
Confidence 345666666666666554444555555 5688889999999999998887 3333 4667776655 6788999 89
Q ss_pred HHHHHHHHHhHhccCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCC
Q 005912 87 QDVAELLGMMVEDHKRLQPNVKTY-ALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGR 165 (670)
Q Consensus 87 ~eAl~lf~eM~~~~~gi~Pd~~Ty-~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~ 165 (670)
+.|+.+|-.|-. ..+..+. -.+.+-|-+++.+--|-+.|..+....+.|.-. .|+.+ .+.-++..++....
T Consensus 445 ~lAW~~~lk~~t-----~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnW--eGKRG-ACaG~f~~l~~~~~ 516 (557)
T KOG3785|consen 445 QLAWDMMLKTNT-----PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENW--EGKRG-ACAGLFRQLANHKT 516 (557)
T ss_pred hHHHHHHHhcCC-----chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcccc--CCccc-hHHHHHHHHHcCCC
Confidence 999888877643 2233333 345577889999999999999998866555433 55555 45556666654433
Q ss_pred ----HHHHHHHHHHHhh
Q 005912 166 ----IIELLEALEAMAK 178 (670)
Q Consensus 166 ----~eeA~~vf~~M~~ 178 (670)
.....+|..-+..
T Consensus 517 ~~~p~~~~rEVvhllr~ 533 (557)
T KOG3785|consen 517 DPIPISQMREVVHLLRM 533 (557)
T ss_pred CCCchhHHHHHHHHHHh
Confidence 3344445544433
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=94.45 E-value=1.5 Score=43.74 Aligned_cols=122 Identities=11% Similarity=0.065 Sum_probs=93.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHH-HHcCCcccH
Q 005912 8 AGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAY-TRAESYDRV 86 (670)
Q Consensus 8 ~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay-~k~g~~~~~ 86 (670)
.++.+++...++...+. -..|...|..|-..|...|+++.|...|++... .. .-|...|..+-.++ .+.|++ ..
T Consensus 52 ~~~~~~~i~~l~~~L~~-~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~--l~-P~~~~~~~~lA~aL~~~~g~~-~~ 126 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA-NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQ--LR-GENAELYAALATVLYYQAGQH-MT 126 (198)
T ss_pred chhHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hC-CCCHHHHHHHHHHHHHhcCCC-Cc
Confidence 45567777777665543 245788889999999999999999999998873 11 23677777777764 676732 15
Q ss_pred HHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccC
Q 005912 87 QDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEG 138 (670)
Q Consensus 87 ~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~ 138 (670)
.+|..+|++..+ ..| +..++..+-.++.+.|++++|...++.+.+...
T Consensus 127 ~~A~~~l~~al~----~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 127 PQTREMIDKALA----LDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHHHHH----hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 899999999987 345 567888888999999999999999999987543
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=94.44 E-value=1.4 Score=41.19 Aligned_cols=125 Identities=14% Similarity=0.115 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCH--HHHHH--HHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC
Q 005912 31 FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT--ETYNC--VIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN 106 (670)
Q Consensus 31 ~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~--~tyn~--LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd 106 (670)
..|..++..+ ..++...+...++.+.. . .|+. ..... +-..+...| +.++|...|..... ....|+
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~--~--~~~s~ya~~A~l~lA~~~~~~g---~~~~A~~~l~~~~~--~~~d~~ 82 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAK--D--YPSSPYAALAALQLAKAAYEQG---DYDEAKAALEKALA--NAPDPE 82 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHH--H--CCCChHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHh--hCCCHH
Confidence 3455566665 47888888888888873 1 2222 22222 336677788 78888889988887 442232
Q ss_pred H--HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Q 005912 107 V--KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEA 175 (670)
Q Consensus 107 ~--~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~ 175 (670)
. ...-.|-..+...|++++|+.++........ .|..+...=+.|.+.|+.++|...|+.
T Consensus 83 l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~----------~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 83 LKPLARLRLARILLQQGQYDEALATLQQIPDEAF----------KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcch----------HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 2 2333456777789999999998866332111 122555666778899999999988875
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.97 Score=50.20 Aligned_cols=118 Identities=19% Similarity=0.109 Sum_probs=91.8
Q ss_pred HHcCChHHHHHHHHHchhCCCCCCCCH-HHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHHH
Q 005912 41 ATCGIPEVAFATFENMEYGEDYMKPDT-ETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN-VKTYALLVECFT 118 (670)
Q Consensus 41 ak~G~~e~A~~lf~~M~~~~~gi~Pd~-~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd-~~Ty~~LL~a~a 118 (670)
...|.++.|+..++.+. .. .||. .-+.....-+.+.| ++.+|.+.|+.+.. ..|+ ....-++-.+|.
T Consensus 317 ~~~~~~d~A~~~l~~L~---~~-~P~N~~~~~~~~~i~~~~n---k~~~A~e~~~kal~----l~P~~~~l~~~~a~all 385 (484)
T COG4783 317 YLAGQYDEALKLLQPLI---AA-QPDNPYYLELAGDILLEAN---KAKEAIERLKKALA----LDPNSPLLQLNLAQALL 385 (484)
T ss_pred HHhcccchHHHHHHHHH---Hh-CCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHh----cCCCccHHHHHHHHHHH
Confidence 35688999999999976 22 4554 44555566678888 89999999999976 5677 455566778899
Q ss_pred HcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005912 119 KYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAK 178 (670)
Q Consensus 119 k~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~ 178 (670)
+.|++.+|.+++........ ..|+.|..|-.+|...|+..++....-++..
T Consensus 386 ~~g~~~eai~~L~~~~~~~p---------~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 386 KGGKPQEAIRILNRYLFNDP---------EDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred hcCChHHHHHHHHHHhhcCC---------CCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 99999999999988776422 2344899999999999999999988877644
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=94.41 E-value=5.5 Score=47.41 Aligned_cols=135 Identities=12% Similarity=0.133 Sum_probs=108.2
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCH-HHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCC
Q 005912 26 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT-ETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 104 (670)
Q Consensus 26 v~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~-~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~ 104 (670)
...++..+-.|-....+.|..++|..+++...+ +.||. .....+...+.+.+ +.++|+..+++... ..
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~----~~Pd~~~a~~~~a~~L~~~~---~~eeA~~~~~~~l~----~~ 150 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ----RFPDSSEAFILMLRGVKRQQ---GIEAGRAEIELYFS----GG 150 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh----hCCCcHHHHHHHHHHHHHhc---cHHHHHHHHHHHhh----cC
Confidence 445677788888888899999999999999874 46764 56777888889999 89999999999876 46
Q ss_pred CCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 105 PNVKT-YALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 105 Pd~~T-y~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
|+..+ ...+-.++.+.|+.++|..+|+.....+.. .++++..+=.++-+.|+.++|...|+.-.+..
T Consensus 151 p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~---------~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 151 SSSAREILLEAKSWDEIGQSEQADACFERLSRQHPE---------FENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 76554 566667788999999999999999873221 12277788888899999999999999887653
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=94.34 E-value=17 Score=44.41 Aligned_cols=245 Identities=11% Similarity=0.009 Sum_probs=142.3
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHchhC--CCC-CCCCHHHHHHHHHHH
Q 005912 5 DCKAGDHSNALEIAYEMEAAGRMAT----TFHFNHLLSCQATCGIPEVAFATFENMEYG--EDY-MKPDTETYNCVIQAY 77 (670)
Q Consensus 5 y~k~G~~~~Al~lf~~M~~~Gv~Pd----~~tyn~LI~~yak~G~~e~A~~lf~~M~~~--~~g-i~Pd~~tyn~LI~ay 77 (670)
+...|+++.|...++.....--..+ ....+.+-..+...|+++.|...+.+.... ..| ..+-..+++.+-..+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 4578999999999988765311112 134466666778899999999999887620 111 111234455566677
Q ss_pred HHcCCcccHHHHHHHHHHhHhcc--CCCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccC--CCcccccCCCCc
Q 005912 78 TRAESYDRVQDVAELLGMMVEDH--KRLQ--P-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEG--GTKVLHNEGNFG 150 (670)
Q Consensus 78 ~k~g~~~~~~eAl~lf~eM~~~~--~gi~--P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~--~~~v~~~~g~~p 150 (670)
...| +..+|...+.+..... .+.. | ...++..+-..+...|++++|...+........ .+... +
T Consensus 542 ~~~G---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~------~ 612 (903)
T PRK04841 542 FAQG---FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQ------L 612 (903)
T ss_pred HHCC---CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHH------H
Confidence 8889 7778888777654310 1211 1 234455555667778999999999888765211 11000 1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHH
Q 005912 151 DPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGE 230 (670)
Q Consensus 151 dtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~ 230 (670)
..+..+-..+...|+.++|...+............... +....... ........|..+.
T Consensus 613 ~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~-----~~~~~~~~----------------~~~~~~~~g~~~~ 671 (903)
T PRK04841 613 QCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSD-----WIANADKV----------------RLIYWQMTGDKEA 671 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHh-----HhhHHHHH----------------HHHHHHHCCCHHH
Confidence 15566677888999999999999887542110010000 10000000 0112234677888
Q ss_pred HHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005912 231 RKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNE 282 (670)
Q Consensus 231 a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~ 282 (670)
+..++........ ... +... .....+...+...|+.++|..++......
T Consensus 672 A~~~l~~~~~~~~-~~~-~~~~-~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 672 AANWLRQAPKPEF-ANN-HFLQ-GQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHHHHhcCCCCC-ccc-hhHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888776543211 111 1111 11123456788899999999999887654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.06 E-value=8 Score=42.46 Aligned_cols=160 Identities=13% Similarity=-0.006 Sum_probs=76.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC-
Q 005912 102 RLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN- 180 (670)
Q Consensus 102 gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g- 180 (670)
-++-|+.....+-.++...|+.++|...|+......+- .+..| |.|..| +.+.|+.+....+...+....
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~M-----D~Ya~L---L~~eg~~e~~~~L~~~Lf~~~~ 297 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAM-----DLYAVL---LGQEGGCEQDSALMDYLFAKVK 297 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhH-----HHHHHH---HHhccCHhhHHHHHHHHHhhhh
Confidence 34445666677777777777777777777776553211 01000 033333 345566655555554443322
Q ss_pred CCCCCchHHHHhHH-HHHHHHHHHHHHHHHHcC--CCHHHHH--HHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhh
Q 005912 181 QPVPPRAMILSRKY-RTLVSSWIEPLQEEAELG--YEIDYIA--RYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNP 255 (670)
Q Consensus 181 i~i~p~~~i~~~ty-~~ll~a~~~ll~~m~~~G--~~pd~i~--~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~L 255 (670)
....+-.+..+..| ..-.+.+..+...-++.. -.|-.|. .++...++..+|..-|+..... .|. +--+|
T Consensus 298 ~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--ap~-rL~~Y--- 371 (564)
T KOG1174|consen 298 YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML--APY-RLEIY--- 371 (564)
T ss_pred cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc--chh-hHHHH---
Confidence 10011111111011 011111111111111111 0111222 4456677888888888776542 221 22456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 005912 256 METSFKQRCLEDGKKYHRKLLR 277 (670)
Q Consensus 256 Ie~lv~~~~~~G~~e~A~~Lf~ 277 (670)
++++..|.-.|++.+|.-+-+
T Consensus 372 -~GL~hsYLA~~~~kEA~~~An 392 (564)
T KOG1174|consen 372 -RGLFHSYLAQKRFKEANALAN 392 (564)
T ss_pred -HHHHHHHHhhchHHHHHHHHH
Confidence 566699999999998865544
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.01 E-value=3.2 Score=43.55 Aligned_cols=126 Identities=12% Similarity=0.052 Sum_probs=79.4
Q ss_pred cCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCC
Q 005912 43 CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCA 122 (670)
Q Consensus 43 ~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~ 122 (670)
.+++..++.+.++.+ . +-+..+-+-.=.-..+.| +.+.|++-|..-.+- +|..| ...||..+.-| +.++
T Consensus 125 e~Dl~g~rsLveQlp--~---en~Ad~~in~gCllykeg---qyEaAvqkFqaAlqv-sGyqp-llAYniALaHy-~~~q 193 (459)
T KOG4340|consen 125 EGDLPGSRSLVEQLP--S---ENEADGQINLGCLLYKEG---QYEAAVQKFQAALQV-SGYQP-LLAYNLALAHY-SSRQ 193 (459)
T ss_pred cccCcchHHHHHhcc--C---CCccchhccchheeeccc---cHHHHHHHHHHHHhh-cCCCc-hhHHHHHHHHH-hhhh
Confidence 456666666666665 1 112222222222234677 788999999988774 67766 57888887555 6788
Q ss_pred HHHHHHHHHHHHHccCCCcccccCCCC---c------h----HHHHHHHH-------HHHcCCHHHHHHHHHHHhhC
Q 005912 123 VTEAIRHFRALQNYEGGTKVLHNEGNF---G------D----PLSLYLRA-------LCREGRIIELLEALEAMAKD 179 (670)
Q Consensus 123 ~d~A~~lf~~M~~~g~~~~v~~~~g~~---p------d----tyn~LI~a-------y~k~G~~eeA~~vf~~M~~~ 179 (670)
.+.|+.+..+++.+|+........|.. | + .-+.++.+ +-+.|+.+.|.+.+-.|.-+
T Consensus 194 yasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPR 270 (459)
T KOG4340|consen 194 YASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPR 270 (459)
T ss_pred HHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCc
Confidence 999999999999988743322111111 1 1 33344443 56789999999998888544
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=93.93 E-value=2.5 Score=39.47 Aligned_cols=116 Identities=14% Similarity=0.087 Sum_probs=83.1
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHHcCChHHHHHHHHHchhCCCCCCCCH--HHHHHHHHHHHHcC
Q 005912 7 KAGDHSNALEIAYEMEAAGRMATTFHFNH---LLSCQATCGIPEVAFATFENMEYGEDYMKPDT--ETYNCVIQAYTRAE 81 (670)
Q Consensus 7 k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~---LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~--~tyn~LI~ay~k~g 81 (670)
..++...+...++.+.... ..+....-+ +-..+...|++++|...|+... .....|+. ...-.|-..+...|
T Consensus 23 ~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~--~~~~d~~l~~~a~l~LA~~~~~~~ 99 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKAL--ANAPDPELKPLARLRLARILLQQG 99 (145)
T ss_pred HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--hhCCCHHHHHHHHHHHHHHHHHcC
Confidence 4788899999999988752 223222222 3367888999999999999998 44423322 23444667778888
Q ss_pred CcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005912 82 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRA 132 (670)
Q Consensus 82 ~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~ 132 (670)
+.++|+..+..... .. .....+...-..|.+.|+.++|+..|..
T Consensus 100 ---~~d~Al~~L~~~~~--~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 100 ---QYDEALATLQQIPD--EA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred ---CHHHHHHHHHhccC--cc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 78899999977543 33 3345666777889999999999999875
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.34 Score=38.67 Aligned_cols=65 Identities=20% Similarity=0.192 Sum_probs=46.6
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHH
Q 005912 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQ 75 (670)
Q Consensus 6 ~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ 75 (670)
.+.|++++|+++|+.+.... +-|...+-.|..+|.+.|++++|..+|+.+.. ..|+...|..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~----~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK----QDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG----GGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCcCHHHHHHHHh
Confidence 46788888888888887642 22666677788888888888888888888873 2566666665543
|
... |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.78 Score=48.27 Aligned_cols=99 Identities=17% Similarity=0.045 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccC
Q 005912 67 TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNE 146 (670)
Q Consensus 67 ~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~ 146 (670)
+.+|..+++..-+.+ ..+.|..+|.+-+.. ..+....+...++|.- ...++.+.|..||+...+. +
T Consensus 1 t~v~i~~m~~~~r~~---g~~~aR~vF~~a~~~-~~~~~~vy~~~A~~E~-~~~~d~~~A~~Ife~glk~---------f 66 (280)
T PF05843_consen 1 TLVWIQYMRFMRRTE---GIEAARKVFKRARKD-KRCTYHVYVAYALMEY-YCNKDPKRARKIFERGLKK---------F 66 (280)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHCC-CCS-THHHHHHHHHHH-HTCS-HHHHHHHHHHHHHH---------H
T ss_pred CHHHHHHHHHHHHhC---ChHHHHHHHHHHHcC-CCCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHH---------C
Confidence 357999999999988 799999999999862 3345555555555543 3357778899999998875 3
Q ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 005912 147 GNFGDPLSLYLRALCREGRIIELLEALEAMAKD 179 (670)
Q Consensus 147 g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~ 179 (670)
+..++.|...|+.+.+.|+.+.|..+|+.....
T Consensus 67 ~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~ 99 (280)
T PF05843_consen 67 PSDPDFWLEYLDFLIKLNDINNARALFERAISS 99 (280)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT
T ss_pred CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh
Confidence 334448999999999999999999999998765
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.59 E-value=1.8 Score=48.80 Aligned_cols=153 Identities=9% Similarity=0.063 Sum_probs=115.9
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcCCcccHHHH
Q 005912 11 HSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAESYDRVQDV 89 (670)
Q Consensus 11 ~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~g~~~~~~eA 89 (670)
.+.....++++...-..--+.+|-.+|+.--|..-+..|+.+|.+.. ..+..+ ++..++++|.-||... -.-|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR--~~~r~~hhVfVa~A~mEy~cskD----~~~A 420 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAR--EDKRTRHHVFVAAALMEYYCSKD----KETA 420 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHh--hccCCcchhhHHHHHHHHHhcCC----hhHH
Confidence 44555566665544332334678889999999999999999999999 677777 8999999999999886 6789
Q ss_pred HHHHHHhHhccCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHH
Q 005912 90 AELLGMMVEDHKRLQPNVKTY-ALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIE 168 (670)
Q Consensus 90 l~lf~eM~~~~~gi~Pd~~Ty-~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~ee 168 (670)
+++|+-=.. --+|.-.| ..-+.-+.+.++-..++.+|+......++++-.- ..|..+|+-=..-|++..
T Consensus 421 frIFeLGLk----kf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~------~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 421 FRIFELGLK----KFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSK------EIWDRMLEYESNVGDLNS 490 (656)
T ss_pred HHHHHHHHH----hcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhH------HHHHHHHHHHHhcccHHH
Confidence 999986333 13555555 4466677888999999999999988644432111 189999999999999999
Q ss_pred HHHHHHHHhhC
Q 005912 169 LLEALEAMAKD 179 (670)
Q Consensus 169 A~~vf~~M~~~ 179 (670)
+.++-+++...
T Consensus 491 i~~lekR~~~a 501 (656)
T KOG1914|consen 491 ILKLEKRRFTA 501 (656)
T ss_pred HHHHHHHHHHh
Confidence 99988877543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.11 E-value=19 Score=41.04 Aligned_cols=262 Identities=8% Similarity=-0.005 Sum_probs=149.2
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcc
Q 005912 5 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 84 (670)
Q Consensus 5 y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~ 84 (670)
+-..+++.+.+.+++...+. ..++...+-.=|..+...|+..+-+.+=.+|.. ...-..+||=++=--|-.-|
T Consensus 254 ~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~---~yP~~a~sW~aVg~YYl~i~--- 326 (611)
T KOG1173|consen 254 LYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVD---LYPSKALSWFAVGCYYLMIG--- 326 (611)
T ss_pred HHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHH---hCCCCCcchhhHHHHHHHhc---
Confidence 44578889999999887654 334444455556677777776665555555551 12234677877777777777
Q ss_pred cHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcC
Q 005912 85 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREG 164 (670)
Q Consensus 85 ~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G 164 (670)
+..+|.+.|.+-..-...+-|- |-..-.+|+-.|.-++|...+...-+.-.+..+ |..|..| -|.+.+
T Consensus 327 k~seARry~SKat~lD~~fgpa---Wl~fghsfa~e~EhdQAmaaY~tAarl~~G~hl-------P~LYlgm--ey~~t~ 394 (611)
T KOG1173|consen 327 KYSEARRYFSKATTLDPTFGPA---WLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHL-------PSLYLGM--EYMRTN 394 (611)
T ss_pred CcHHHHHHHHHHhhcCccccHH---HHHHhHHhhhcchHHHHHHHHHHHHHhccCCcc-------hHHHHHH--HHHHhc
Confidence 6778888887754311334443 444456677778888888877766654333222 1123222 366778
Q ss_pred CHHHHHHHHHHHhhCCCCCCCchH----HHHhHHHHHHHHHHHHHHHHH----HcC-----CCHH--HHHHHHHcCCcHH
Q 005912 165 RIIELLEALEAMAKDNQPVPPRAM----ILSRKYRTLVSSWIEPLQEEA----ELG-----YEID--YIARYISEGGLTG 229 (670)
Q Consensus 165 ~~eeA~~vf~~M~~~gi~i~p~~~----i~~~ty~~ll~a~~~ll~~m~----~~G-----~~pd--~i~~~~~~~g~~~ 229 (670)
+++-|.+.|.+-..... -.|-.. ...|++.....+ ...|+... ..+ ..|- .+-..+.+.+..+
T Consensus 395 n~kLAe~Ff~~A~ai~P-~Dplv~~Elgvvay~~~~y~~A-~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~ 472 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIAP-SDPLVLHELGVVAYTYEEYPEA-LKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE 472 (611)
T ss_pred cHHHHHHHHHHHHhcCC-CcchhhhhhhheeehHhhhHHH-HHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH
Confidence 88888888876544321 111100 122333333322 22222111 000 1121 1224577888899
Q ss_pred HHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHH
Q 005912 230 ERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEE 300 (670)
Q Consensus 230 ~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~ 300 (670)
+|...|+.-.... .-+. -+|+++= -.|...|+++.|...|++-. .+. |+......++.
T Consensus 473 eAI~~~q~aL~l~-~k~~--~~~asig----~iy~llgnld~Aid~fhKaL--~l~----p~n~~~~~lL~ 530 (611)
T KOG1173|consen 473 EAIDYYQKALLLS-PKDA--STHASIG----YIYHLLGNLDKAIDHFHKAL--ALK----PDNIFISELLK 530 (611)
T ss_pred HHHHHHHHHHHcC-CCch--hHHHHHH----HHHHHhcChHHHHHHHHHHH--hcC----CccHHHHHHHH
Confidence 9999998865431 1233 3333332 45678899999999999765 444 55555555554
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.45 Score=49.34 Aligned_cols=104 Identities=14% Similarity=0.236 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHHHH-----cCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC------------c-ccHHHHH
Q 005912 29 TTFHFNHLLSCQAT-----CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES------------Y-DRVQDVA 90 (670)
Q Consensus 29 d~~tyn~LI~~yak-----~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~------------~-~~~~eAl 90 (670)
|-.+|-+.+..|.. .+.++-...-++.|. +.|++.|..+|+.||+-+-+..- | .+-.-++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~--eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMK--EYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH--HhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 44455555555442 245555566666666 66777777777777665543311 1 1345688
Q ss_pred HHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHc
Q 005912 91 ELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVT-EAIRHFRALQNY 136 (670)
Q Consensus 91 ~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d-~A~~lf~~M~~~ 136 (670)
.++++|.. -|+.||..+=..|+++|.+-+-.- +..++.-.|-+.
T Consensus 144 ~vLeqME~--hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPkf 188 (406)
T KOG3941|consen 144 KVLEQMEW--HGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPKF 188 (406)
T ss_pred HHHHHHHH--cCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhhh
Confidence 99999998 899999999999999999888754 566776666653
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=92.95 E-value=15 Score=39.25 Aligned_cols=195 Identities=14% Similarity=-0.004 Sum_probs=115.8
Q ss_pred HHhcCChHHHHHHHHHHHHcC-CCCCHHHHH-HHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 5 DCKAGDHSNALEIAYEMEAAG-RMATTFHFN-HLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 5 y~k~G~~~~Al~lf~~M~~~G-v~Pd~~tyn-~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
|...|+.+.+...+....... -.++...-. .....+...|++++|..++++... . ...|...++. ..++...|.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~--~-~P~~~~a~~~-~~~~~~~~~ 91 (355)
T cd05804 16 LLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLD--D-YPRDLLALKL-HLGAFGLGD 91 (355)
T ss_pred HHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--H-CCCcHHHHHH-hHHHHHhcc
Confidence 344566777666665544321 122322222 223345678999999999998762 1 1234445553 223333332
Q ss_pred c-ccHHHHHHHHHHhHhccCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHH
Q 005912 83 Y-DRVQDVAELLGMMVEDHKRLQPNV-KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRAL 160 (670)
Q Consensus 83 ~-~~~~eAl~lf~eM~~~~~gi~Pd~-~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay 160 (670)
+ +....+.+.+.. . ....|+. ..+..+-..+...|++++|.+.++......... .. .+..+-..|
T Consensus 92 ~~~~~~~~~~~l~~--~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~-~~--------~~~~la~i~ 158 (355)
T cd05804 92 FSGMRDHVARVLPL--W--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD-AW--------AVHAVAHVL 158 (355)
T ss_pred cccCchhHHHHHhc--c--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-cH--------HHHHHHHHH
Confidence 1 134444444443 2 3334543 444566678889999999999999998754322 11 678888899
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhcc
Q 005912 161 CREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGK 240 (670)
Q Consensus 161 ~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~ 240 (670)
...|++++|...++........ .+...+. .|..+ ..++...|..++|..+++....
T Consensus 159 ~~~g~~~eA~~~l~~~l~~~~~-~~~~~~~--~~~~l---------------------a~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 159 EMQGRFKEGIAFMESWRDTWDC-SSMLRGH--NWWHL---------------------ALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHcCCHHHHHHHHHhhhhccCC-CcchhHH--HHHHH---------------------HHHHHHCCCHHHHHHHHHHHhc
Confidence 9999999999999987664321 2222110 01111 1234667899999999998743
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.83 E-value=23 Score=41.16 Aligned_cols=336 Identities=9% Similarity=0.009 Sum_probs=163.0
Q ss_pred hcCChHHHHHHHHH----HHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC--CHHHHHHHHHHHHHc
Q 005912 7 KAGDHSNALEIAYE----MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP--DTETYNCVIQAYTRA 80 (670)
Q Consensus 7 k~G~~~~Al~lf~~----M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P--d~~tyn~LI~ay~k~ 80 (670)
.+|+.+....+.++ +...|+..|..-|-.=-..|-+.|.+-.+..+..... .-|++- --.||+.--..|.+.
T Consensus 452 ~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avi--gigvEeed~~~tw~~da~~~~k~ 529 (913)
T KOG0495|consen 452 ANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVI--GIGVEEEDRKSTWLDDAQSCEKR 529 (913)
T ss_pred hcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHH--hhccccchhHhHHhhhHHHHHhc
Confidence 35666666666543 4456777777777555555666666666666665555 344332 235566666666666
Q ss_pred CCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHH
Q 005912 81 ESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRA 159 (670)
Q Consensus 81 g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~a 159 (670)
+ -.+-|..+|....+ +-| +...|.-+...=-..|..+.-..+|......-....+ .|-....-
T Consensus 530 ~---~~~carAVya~alq----vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~---------lwlM~ake 593 (913)
T KOG0495|consen 530 P---AIECARAVYAHALQ----VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEI---------LWLMYAKE 593 (913)
T ss_pred c---hHHHHHHHHHHHHh----hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchh---------HHHHHHHH
Confidence 6 44455555555443 222 3344555544445556666666666555543221111 34444444
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHH---------HHHHHHHHHHHcCCCHHHHH---HHHHcCCc
Q 005912 160 LCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVS---------SWIEPLQEEAELGYEIDYIA---RYISEGGL 227 (670)
Q Consensus 160 y~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~---------a~~~ll~~m~~~G~~pd~i~---~~~~~~g~ 227 (670)
+-..|++..|..++....+.+- .+.-| +-.-+. .+-.+|......+-.+.+.. .+-..-+.
T Consensus 594 ~w~agdv~~ar~il~~af~~~p---nseei----wlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~ 666 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEANP---NSEEI----WLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDN 666 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhCC---CcHHH----HHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhh
Confidence 5555555555555555544431 11111 111111 11111111111111111110 11122345
Q ss_pred HHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHH---HCCCCccCCCCHHHHHHHHHHHHH
Q 005912 228 TGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQ---NEGPAVLGDVSESDYVRVEERLKK 304 (670)
Q Consensus 228 ~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~---~~gv~~~g~~~~~~~~~~l~~l~k 304 (670)
+++|.++++...+. -|+. . +.|...|++.+-..-++.-+ ..|.+.. |++.-+-.++..+..
T Consensus 667 ~eeA~rllEe~lk~--fp~f--~----------Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c--P~~ipLWllLakleE 730 (913)
T KOG0495|consen 667 VEEALRLLEEALKS--FPDF--H----------KLWLMLGQIEEQMENIEMAREAYLQGTKKC--PNSIPLWLLLAKLEE 730 (913)
T ss_pred HHHHHHHHHHHHHh--CCch--H----------HHHHHHhHHHHHHHHHHHHHHHHHhccccC--CCCchHHHHHHHHHH
Confidence 66676666555432 1332 1 22233333332222222111 2344321 333333333333332
Q ss_pred ccCCCcccccccccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCChhhhhcCCCCCCCcchhhhhhhHHHHHHHH
Q 005912 305 LIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDELIS 384 (670)
Q Consensus 305 ~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~Gip~d~t~~~Ll~a~~~aG~~~eA~~~~~~~p~~e~~~~~vdeE~~~li~ 384 (670)
+.|..-.|..++++-+-.+-.+..-|...|+.=.++|..++|.. ++.
T Consensus 731 ------------k~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~---------------------lma 777 (913)
T KOG0495|consen 731 ------------KDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAEL---------------------LMA 777 (913)
T ss_pred ------------HhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHH---------------------HHH
Confidence 45567778888877666553445788889999999999887753 333
Q ss_pred h-cccCCCcHhHHHHhhhccCcCCCCCcccccc
Q 005912 385 R-IKLEEGNTEFWKRRFLGEGLNGRHDKAVEMD 416 (670)
Q Consensus 385 ~-~~~~~~~~~~w~~~llg~~~~~~~~~~~~~~ 416 (670)
+ +..-|.++..|....--..+-.+...+.+..
T Consensus 778 kALQecp~sg~LWaEaI~le~~~~rkTks~DAL 810 (913)
T KOG0495|consen 778 KALQECPSSGLLWAEAIWLEPRPQRKTKSIDAL 810 (913)
T ss_pred HHHHhCCccchhHHHHHHhccCcccchHHHHHH
Confidence 3 4444567778876555445445554555443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=92.81 E-value=1.6 Score=47.55 Aligned_cols=98 Identities=14% Similarity=0.079 Sum_probs=60.9
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcCCc
Q 005912 5 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAESY 83 (670)
Q Consensus 5 y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~g~~ 83 (670)
+...|+++.|+++|++..+.. .-+...|..+-.+|.+.|++++|...+++... +.| +...|..+-.+|.+.|
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~----l~P~~~~a~~~lg~~~~~lg-- 84 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE----LDPSLAKAYLRKGTACMKLE-- 84 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCcCCHHHHHHHHHHHHHhC--
Confidence 445677777777777766532 22455566666677777777777777777652 123 4556666666777777
Q ss_pred ccHHHHHHHHHHhHhccCCCCCCHHHHHHHH
Q 005912 84 DRVQDVAELLGMMVEDHKRLQPNVKTYALLV 114 (670)
Q Consensus 84 ~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL 114 (670)
+.++|+..|++..+ +.|+...+...+
T Consensus 85 -~~~eA~~~~~~al~----l~P~~~~~~~~l 110 (356)
T PLN03088 85 -EYQTAKAALEKGAS----LAPGDSRFTKLI 110 (356)
T ss_pred -CHHHHHHHHHHHHH----hCCCCHHHHHHH
Confidence 66677777777655 445554444443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.49 E-value=23 Score=40.36 Aligned_cols=280 Identities=8% Similarity=-0.036 Sum_probs=171.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHH
Q 005912 29 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK 108 (670)
Q Consensus 29 d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~ 108 (670)
|+...-+-..-|-.++++.+..++++.... ...++...+..=|.++...| +..+-+.+=.+|+.+ .+-..+
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle---~dpfh~~~~~~~ia~l~el~---~~n~Lf~lsh~LV~~---yP~~a~ 313 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLE---KDPFHLPCLPLHIACLYELG---KSNKLFLLSHKLVDL---YPSKAL 313 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHh---hCCCCcchHHHHHHHHHHhc---ccchHHHHHHHHHHh---CCCCCc
Confidence 444445555667788999999999999873 23456666777788999999 555666666777763 223457
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCCCCCCc
Q 005912 109 TYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAK--DNQPVPPR 186 (670)
Q Consensus 109 Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~--~gi~i~p~ 186 (670)
+|-++-.-|--.|...+|++.|...... .+..+..|-.+=..|+-.|.-++|+..+..--+ .|.- .|.
T Consensus 314 sW~aVg~YYl~i~k~seARry~SKat~l---------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~ 383 (611)
T KOG1173|consen 314 SWFAVGCYYLMIGKYSEARRYFSKATTL---------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPS 383 (611)
T ss_pred chhhHHHHHHHhcCcHHHHHHHHHHhhc---------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chH
Confidence 8877777777889999999999876542 222223788899999999999999988765433 2321 243
Q ss_pred hHHHHhHHHHH--HHHHHHHHHHHHHcCCCHHH---H---HHHHHcCCcHHHHHHHHHHhcc--CCCCCCcccchhhhhH
Q 005912 187 AMILSRKYRTL--VSSWIEPLQEEAELGYEIDY---I---ARYISEGGLTGERKRWVPRRGK--TPLDPDAVGFIYSNPM 256 (670)
Q Consensus 187 ~~i~~~ty~~l--l~a~~~ll~~m~~~G~~pd~---i---~~~~~~~g~~~~a~~lf~~m~~--~gi~Pd~d~~ty~~LI 256 (670)
-.+ +.-|... +.-+-+.+ +...++.|+. . -...-+.+...+|..+|+.-.. ..+.+.. .+|-.+.
T Consensus 384 LYl-gmey~~t~n~kLAe~Ff--~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~--~~w~p~~ 458 (611)
T KOG1173|consen 384 LYL-GMEYMRTNNLKLAEKFF--KQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEK--IFWEPTL 458 (611)
T ss_pred HHH-HHHHHHhccHHHHHHHH--HHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccc--cchhHHH
Confidence 221 1111110 11111111 2233444431 1 1112234567888888877652 1222222 3466666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHHhCCC
Q 005912 257 ETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGL 336 (670)
Q Consensus 257 e~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~Gi 336 (670)
..+=..|.+.+..++|+..|+.-....-+ +..++.. +-.+-. ..|.++.|...|.+- .++
T Consensus 459 ~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k-----~~~~~as-ig~iy~------------llgnld~Aid~fhKa--L~l 518 (611)
T KOG1173|consen 459 NNLGHAYRKLNKYEEAIDYYQKALLLSPK-----DASTHAS-IGYIYH------------LLGNLDKAIDHFHKA--LAL 518 (611)
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHHHcCCC-----chhHHHH-HHHHHH------------HhcChHHHHHHHHHH--Hhc
Confidence 66668999999999999999987765443 3333333 211111 235578888888864 446
Q ss_pred -CCHHHHHHHHHHHHHh
Q 005912 337 -PTDGTRNVLYQRVQKA 352 (670)
Q Consensus 337 -p~d~t~~~Ll~a~~~a 352 (670)
|++.+-..++..+...
T Consensus 519 ~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 519 KPDNIFISELLKLAIED 535 (611)
T ss_pred CCccHHHHHHHHHHHHh
Confidence 6666666677655444
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.45 E-value=2.5 Score=49.11 Aligned_cols=152 Identities=16% Similarity=0.102 Sum_probs=84.2
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCc
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESY 83 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~ 83 (670)
.+...|-...|+.+|+++.- |--+|.+|+..|+..+|..+..+-. + -.||..-|.++-.......
T Consensus 407 ll~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~l--e--k~~d~~lyc~LGDv~~d~s-- 471 (777)
T KOG1128|consen 407 LLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQEL--E--KDPDPRLYCLLGDVLHDPS-- 471 (777)
T ss_pred HHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHh--c--CCCcchhHHHhhhhccChH--
Confidence 45566777777777776643 5667777777777777777666655 2 2466666666555544443
Q ss_pred ccHHHHHHHHHHhHhc---c---------------------CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccC
Q 005912 84 DRVQDVAELLGMMVED---H---------------------KRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEG 138 (670)
Q Consensus 84 ~~~~eAl~lf~eM~~~---~---------------------~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~ 138 (670)
-.+.|+++++..... + -.+.| -..||-.+=.+..+.+++..|.+.|.......+
T Consensus 472 -~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~P 550 (777)
T KOG1128|consen 472 -LYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEP 550 (777)
T ss_pred -HHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 344555555543220 0 00011 112333333333455666666666655443211
Q ss_pred CCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 139 GTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 139 ~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
.. -. .||.+=.+|.+.|+..+|+..+.+-.+-+
T Consensus 551 d~-~e--------aWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 551 DN-AE--------AWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred Cc-hh--------hhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 10 00 67777777777777777777777766655
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.37 E-value=4.4 Score=47.74 Aligned_cols=117 Identities=15% Similarity=0.184 Sum_probs=87.4
Q ss_pred CHHHHHHHHH--HHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCC---
Q 005912 29 TTFHFNHLLS--CQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL--- 103 (670)
Q Consensus 29 d~~tyn~LI~--~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi--- 103 (670)
|..|-.++|+ .|...|+.+.|++-.+.++ +-+.|..|-+.|++.. +++-|.-.+..|..- +|.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--------S~~vW~nmA~McVkT~---RLDVAkVClGhm~~a-RgaRAl 792 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--------SDSVWDNMASMCVKTR---RLDVAKVCLGHMKNA-RGARAL 792 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--------hhHHHHHHHHHhhhhc---cccHHHHhhhhhhhh-hhHHHH
Confidence 6777788886 4888999999998888777 5678999999999998 677777777777542 221
Q ss_pred -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Q 005912 104 -----QPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEA 175 (670)
Q Consensus 104 -----~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~ 175 (670)
.|+ .+=.-+.-.....|.+++|+.+++..++ |..|=..|-..|++++|+++-+.
T Consensus 793 R~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-----------------~DLlNKlyQs~g~w~eA~eiAE~ 851 (1416)
T KOG3617|consen 793 RRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR-----------------YDLLNKLYQSQGMWSEAFEIAET 851 (1416)
T ss_pred HHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----------------HHHHHHHHHhcccHHHHHHHHhh
Confidence 232 2222222234578999999999999887 55666778889999999998764
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=92.33 E-value=3 Score=44.79 Aligned_cols=107 Identities=17% Similarity=0.195 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHH
Q 005912 31 FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 110 (670)
Q Consensus 31 ~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty 110 (670)
.+.+..|.-+...|....|.++-.+.+ .||..-|-..|.+|+..+ ++++-.++- . ..-.| +-|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk------v~dkrfw~lki~aLa~~~---~w~eL~~fa---~---skKsP--IGy 240 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK------VPDKRFWWLKIKALAENK---DWDELEKFA---K---SKKSP--IGY 240 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC------CcHHHHHHHHHHHHHhcC---CHHHHHHHH---h---CCCCC--CCh
Confidence 355777788888999999999999998 899999999999999999 555533332 2 22233 789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHH
Q 005912 111 ALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEA 172 (670)
Q Consensus 111 ~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~v 172 (670)
-.++.+|.+.|+..+|..+...+ ++.--+..|.++|.+.+|-+.
T Consensus 241 epFv~~~~~~~~~~eA~~yI~k~------------------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 241 EPFVEACLKYGNKKEASKYIPKI------------------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhC------------------ChHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999887762 467889999999999998765
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=92.32 E-value=1.5 Score=40.42 Aligned_cols=88 Identities=13% Similarity=0.094 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHh-------------ccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005912 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVE-------------DHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRA 132 (670)
Q Consensus 66 d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~-------------~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~ 132 (670)
|..++.++|.++++.| +++....+....-. ....+.|+..+..+++.+|+.++++..|.++.+.
T Consensus 1 de~~~~~ii~al~r~g---~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~ 77 (126)
T PF12921_consen 1 DEELLCNIIYALGRSG---QLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDF 77 (126)
T ss_pred ChHHHHHHHHHHhhcC---CHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 5678999999999999 56665555553311 0145679999999999999999999999999999
Q ss_pred HHHccCCCcccccCCCCchHHHHHHHHHHHc
Q 005912 133 LQNYEGGTKVLHNEGNFGDPLSLYLRALCRE 163 (670)
Q Consensus 133 M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~ 163 (670)
..+.-. ..+. ..+|..|+.=....
T Consensus 78 fs~~Y~-I~i~------~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 78 FSRKYP-IPIP------KEFWRRLLEWAYVL 101 (126)
T ss_pred HHHHcC-CCCC------HHHHHHHHHHHHHh
Confidence 887422 1111 11777777654443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=92.11 E-value=0.55 Score=39.50 Aligned_cols=80 Identities=13% Similarity=0.208 Sum_probs=52.5
Q ss_pred cCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCH-HHHHHHHHHHHHcCCccc
Q 005912 8 AGDHSNALEIAYEMEAAGRM-ATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT-ETYNCVIQAYTRAESYDR 85 (670)
Q Consensus 8 ~G~~~~Al~lf~~M~~~Gv~-Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~-~tyn~LI~ay~k~g~~~~ 85 (670)
.|+++.|+.+|+++.+..-. |+...+-.+-.+|.+.|++++|..+++... +.|.. ...-.+-.+|.+.| +
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~-----~~~~~~~~~~l~a~~~~~l~---~ 73 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLK-----LDPSNPDIHYLLARCLLKLG---K 73 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHT-----HHHCHHHHHHHHHHHHHHTT----
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHHhC---C
Confidence 57888999999988875321 233344447888888999999999997733 12332 33334456677888 6
Q ss_pred HHHHHHHHHH
Q 005912 86 VQDVAELLGM 95 (670)
Q Consensus 86 ~~eAl~lf~e 95 (670)
.++|++.|.+
T Consensus 74 y~eAi~~l~~ 83 (84)
T PF12895_consen 74 YEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 7788887764
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.82 E-value=19 Score=37.97 Aligned_cols=165 Identities=13% Similarity=0.132 Sum_probs=107.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHH-HHHHHHc
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMA-TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCV-IQAYTRA 80 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~P-d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~L-I~ay~k~ 80 (670)
..+.+..++++|++++..-.++ .| +....+.|-.+|-+..++..|-..++++.+ ..|-..-|..- -.++.++
T Consensus 18 y~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q----l~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 18 YRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ----LHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hChHHHHHHHHHHHHHHHh
Confidence 3457778889999988776664 34 677778888888899999999999998874 35555555432 2344455
Q ss_pred CCcccHHHHHHHHHHhHhcc----------------CC----------CCCCHHHHHHHHH-HH--HHcCCHHHHHHHHH
Q 005912 81 ESYDRVQDVAELLGMMVEDH----------------KR----------LQPNVKTYALLVE-CF--TKYCAVTEAIRHFR 131 (670)
Q Consensus 81 g~~~~~~eAl~lf~eM~~~~----------------~g----------i~Pd~~Ty~~LL~-a~--ak~g~~d~A~~lf~ 131 (670)
+ ...+|+++...|.... .+ -.|...+-..+++ +| -+.|+.+.|.+-|.
T Consensus 92 ~---i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 92 C---IYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred c---ccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 5 4556776666664310 00 0121111111221 22 37899999999998
Q ss_pred HHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCC
Q 005912 132 ALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPP 185 (670)
Q Consensus 132 ~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p 185 (670)
...+.+.-...+ .||.-+..| +.|+...|++...++.++|++--|
T Consensus 169 aAlqvsGyqpll--------AYniALaHy-~~~qyasALk~iSEIieRG~r~HP 213 (459)
T KOG4340|consen 169 AALQVSGYQPLL--------AYNLALAHY-SSRQYASALKHISEIIERGIRQHP 213 (459)
T ss_pred HHHhhcCCCchh--------HHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCC
Confidence 887754333233 788877666 457899999999999999875333
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.27 Score=41.43 Aligned_cols=81 Identities=25% Similarity=0.337 Sum_probs=57.8
Q ss_pred cCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCH-HHHHHHHHHHHHcC
Q 005912 43 CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV-KTYALLVECFTKYC 121 (670)
Q Consensus 43 ~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~-~Ty~~LL~a~ak~g 121 (670)
.|+++.|..+|+++.. ...-.|+...|-.+-.+|.+.| +.++|+.+++. .. +.|.. ...-.+-.+|.+.|
T Consensus 2 ~~~y~~Ai~~~~k~~~-~~~~~~~~~~~~~la~~~~~~~---~y~~A~~~~~~-~~----~~~~~~~~~~l~a~~~~~l~ 72 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLE-LDPTNPNSAYLYNLAQCYFQQG---KYEEAIELLQK-LK----LDPSNPDIHYLLARCLLKLG 72 (84)
T ss_dssp TT-HHHHHHHHHHHHH-HHCGTHHHHHHHHHHHHHHHTT---HHHHHHHHHHC-HT----HHHCHHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHH-HCCCChhHHHHHHHHHHHHHCC---CHHHHHHHHHH-hC----CCCCCHHHHHHHHHHHHHhC
Confidence 5789999999999984 1111225556666899999999 88999999988 32 12332 33345567888999
Q ss_pred CHHHHHHHHHH
Q 005912 122 AVTEAIRHFRA 132 (670)
Q Consensus 122 ~~d~A~~lf~~ 132 (670)
+.++|..+|.+
T Consensus 73 ~y~eAi~~l~~ 83 (84)
T PF12895_consen 73 KYEEAIKALEK 83 (84)
T ss_dssp -HHHHHHHHHH
T ss_pred CHHHHHHHHhc
Confidence 99999999875
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=91.56 E-value=6.5 Score=37.82 Aligned_cols=85 Identities=14% Similarity=0.105 Sum_probs=63.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC-C-HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC
Q 005912 29 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP-D-TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN 106 (670)
Q Consensus 29 d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P-d-~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd 106 (670)
....|..+-..|.+.|++++|...|++.. .....+ + ...|..+-..|.+.| +.++|+..|.+... +.|+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~----~~p~ 104 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEAL--KLEEDPNDRSYILYNMGIIYASNG---EHDKALEYYHQALE----LNPK 104 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHhhccchHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH----hCcc
Confidence 45567888888999999999999999887 222222 1 467889999999999 78899999998876 3453
Q ss_pred -HHHHHHHHHHHHHcCC
Q 005912 107 -VKTYALLVECFTKYCA 122 (670)
Q Consensus 107 -~~Ty~~LL~a~ak~g~ 122 (670)
...+..+...|...|+
T Consensus 105 ~~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 105 QPSALNNIAVIYHKRGE 121 (172)
T ss_pred cHHHHHHHHHHHHHcCC
Confidence 5556666667777666
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=91.32 E-value=5.2 Score=44.60 Aligned_cols=65 Identities=18% Similarity=0.129 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005912 65 PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV----KTYALLVECFTKYCAVTEAIRHFRALQNY 136 (670)
Q Consensus 65 Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~----~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~ 136 (670)
.+...|+.+-.+|.+.| +.++|+..|++-.+ +.|+. .+|..+-.+|++.|++++|...++...+.
T Consensus 73 ~~a~a~~NLG~AL~~lG---ryeEAIa~f~rALe----L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKG---RVKDALAQFETALE----LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHh----hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35788999999999999 88999999999876 56874 46999999999999999999999998874
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.27 E-value=16 Score=41.55 Aligned_cols=119 Identities=14% Similarity=0.090 Sum_probs=85.4
Q ss_pred hHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHH
Q 005912 46 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVT 124 (670)
Q Consensus 46 ~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d 124 (670)
.+.....+++... ...+.|+. +|..+|+.--+.. .+..|..+|.+.++ .+..+ +++.++++|.-|| .++..
T Consensus 347 ~~~~~~~~~~ll~-~~~~~~tL-v~~~~mn~irR~e---GlkaaR~iF~kaR~--~~r~~hhVfVa~A~mEy~c-skD~~ 418 (656)
T KOG1914|consen 347 EKKVHEIYNKLLK-IEDIDLTL-VYCQYMNFIRRAE---GLKAARKIFKKARE--DKRTRHHVFVAAALMEYYC-SKDKE 418 (656)
T ss_pred hhhhHHHHHHHHh-hhccCCce-ehhHHHHHHHHhh---hHHHHHHHHHHHhh--ccCCcchhhHHHHHHHHHh-cCChh
Confidence 4555666666653 33344543 5666777766665 58899999999998 56666 7888888888776 56678
Q ss_pred HHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 005912 125 EAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQ 181 (670)
Q Consensus 125 ~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi 181 (670)
-|.++|+-=.++ +|..|.--+..++-+...|+-..+..+|+....+++
T Consensus 419 ~AfrIFeLGLkk---------f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 419 TAFRIFELGLKK---------FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHHHHHHHHh---------cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 899999864443 333333456788888999999999999999988855
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=91.22 E-value=5.5 Score=47.38 Aligned_cols=120 Identities=12% Similarity=0.027 Sum_probs=98.5
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC-HHHHHHHHHHHHHcC
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMAT-TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD-TETYNCVIQAYTRAE 81 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd-~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd-~~tyn~LI~ay~k~g 81 (670)
...+.|++++|+.+++...+ +.|+ ......+...+.+.+++++|+..+++... ..|+ ....+.+=.++.+.|
T Consensus 95 i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~----~~p~~~~~~~~~a~~l~~~g 168 (694)
T PRK15179 95 ALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS----GGSSSAREILLEAKSWDEIG 168 (694)
T ss_pred HHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh----cCCCCHHHHHHHHHHHHHhc
Confidence 34578999999999999987 4675 44557778889999999999999999873 2454 556677777888999
Q ss_pred CcccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005912 82 SYDRVQDVAELLGMMVEDHKRLQPN-VKTYALLVECFTKYCAVTEAIRHFRALQNY 136 (670)
Q Consensus 82 ~~~~~~eAl~lf~eM~~~~~gi~Pd-~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~ 136 (670)
+.++|..+|++... . .|+ ..++..+-.++-+.|+.++|...|+.....
T Consensus 169 ---~~~~A~~~y~~~~~--~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 169 ---QSEQADACFERLSR--Q--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred ---chHHHHHHHHHHHh--c--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 89999999999986 2 344 688889999999999999999999998764
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.19 E-value=33 Score=39.42 Aligned_cols=109 Identities=14% Similarity=0.097 Sum_probs=68.0
Q ss_pred HHHHHHhcCCHHHHHHHHH--------HHHHCCCCc--------------cCCCCHHHHHHHHHHHHHccCC-Ccccccc
Q 005912 259 SFKQRCLEDGKKYHRKLLR--------TLQNEGPAV--------------LGDVSESDYVRVEERLKKLIKG-PEQHVLK 315 (670)
Q Consensus 259 lv~~~~~~G~~e~A~~Lf~--------~M~~~gv~~--------------~g~~~~~~~~~~l~~l~k~~~~-p~~~~L~ 315 (670)
++......|+++.|.+++. .+.+.+..| .+......+..++..+.+...+ +.-..+.
T Consensus 382 ~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~ 461 (652)
T KOG2376|consen 382 RAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLM 461 (652)
T ss_pred HHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHH
Confidence 4467788999999999998 444444332 1112233333444444433322 1111111
Q ss_pred -------cccCCHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHhCChhhhhcCCCCCCCcc
Q 005912 316 -------PKAASKMVVSELKEELDAQGLPTD-GTRNVLYQRVQKARRINRSRGRPLWVPPVE 369 (670)
Q Consensus 316 -------~~~g~~~~A~~l~~~M~~~Gip~d-~t~~~Ll~a~~~aG~~~eA~~~~~~~p~~e 369 (670)
-++|..++|..+++++.... |++ .+...++.+|++-. .+.|.++...+|+..
T Consensus 462 ~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d-~eka~~l~k~L~p~~ 521 (652)
T KOG2376|consen 462 REAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLD-PEKAESLSKKLPPLK 521 (652)
T ss_pred HHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcC-HHHHHHHhhcCCCcc
Confidence 37799999999999999865 455 78888999988764 567776666666554
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=90.89 E-value=5.4 Score=38.36 Aligned_cols=74 Identities=15% Similarity=0.166 Sum_probs=57.0
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHc
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMAT--TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRA 80 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd--~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~ 80 (670)
.|.+.|++++|...|++....+-.+. ...+..+-..|.+.|+++.|...|++... +.| +...|..+-..|...
T Consensus 44 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~ 119 (172)
T PRK02603 44 SAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE----LNPKQPSALNNIAVIYHKR 119 (172)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHc
Confidence 46678999999999998876543322 46788888999999999999999998872 233 456677777777777
Q ss_pred C
Q 005912 81 E 81 (670)
Q Consensus 81 g 81 (670)
|
T Consensus 120 g 120 (172)
T PRK02603 120 G 120 (172)
T ss_pred C
Confidence 6
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.67 E-value=32 Score=38.79 Aligned_cols=223 Identities=16% Similarity=0.129 Sum_probs=131.0
Q ss_pred HHHcCChHHHHHHHHHchhCCCCCCCCHHH-HHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHH
Q 005912 40 QATCGIPEVAFATFENMEYGEDYMKPDTET-YNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECF 117 (670)
Q Consensus 40 yak~G~~e~A~~lf~~M~~~~~gi~Pd~~t-yn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ 117 (670)
+.-+|+.-.|..-|+.... . .|-..+ |--+-..|...+ +-++.+..|.+-.. +-| |.-+|..--..+
T Consensus 336 ~fL~g~~~~a~~d~~~~I~--l--~~~~~~lyI~~a~~y~d~~---~~~~~~~~F~~A~~----ldp~n~dvYyHRgQm~ 404 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIK--L--DPAFNSLYIKRAAAYADEN---QSEKMWKDFNKAED----LDPENPDVYYHRGQMR 404 (606)
T ss_pred hhhcCCchhhhhhHHHHHh--c--CcccchHHHHHHHHHhhhh---ccHHHHHHHHHHHh----cCCCCCchhHhHHHHH
Confidence 4457888899999988772 2 222222 777777888888 78888889988755 333 345666666666
Q ss_pred HHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHH
Q 005912 118 TKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTL 197 (670)
Q Consensus 118 ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~l 197 (670)
.-.+++++|..=|+..++..+.... .|--+--+.-|.+++++++..|++.+++-. -.|.. |+-.
T Consensus 405 flL~q~e~A~aDF~Kai~L~pe~~~---------~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP-~~~Ev------y~~f 468 (606)
T KOG0547|consen 405 FLLQQYEEAIADFQKAISLDPENAY---------AYIQLCCALYRQHKIAESMKTFEEAKKKFP-NCPEV------YNLF 468 (606)
T ss_pred HHHHHHHHHHHHHHHHhhcChhhhH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCchH------HHHH
Confidence 6677888888888887764322111 343444444578899999999999887742 12222 2222
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccC-----CCCCCcccchhhhhHHHHHHHHHhcCCHHHH
Q 005912 198 VSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKT-----PLDPDAVGFIYSNPMETSFKQRCLEDGKKYH 272 (670)
Q Consensus 198 l~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~-----gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A 272 (670)
... +...+..+.|...|+..... ++-.++-.++--.+| .+-=.+++..|
T Consensus 469 Aei---------------------LtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l-----~~qwk~d~~~a 522 (606)
T KOG0547|consen 469 AEI---------------------LTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALL-----VLQWKEDINQA 522 (606)
T ss_pred HHH---------------------HhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHh-----hhchhhhHHHH
Confidence 222 24445677777777665431 111111112111111 11123778888
Q ss_pred HHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHHh
Q 005912 273 RKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDA 333 (670)
Q Consensus 273 ~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~ 333 (670)
.+|++.-.+..-+ + ...| ..+..+ .-+.|..++|.++|++-..
T Consensus 523 ~~Ll~KA~e~Dpk----c-e~A~----~tlaq~---------~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 523 ENLLRKAIELDPK----C-EQAY----ETLAQF---------ELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHccCch----H-HHHH----HHHHHH---------HHHHhhHHHHHHHHHHHHH
Confidence 8888777655433 2 1122 222221 1367789999999987654
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.48 E-value=6.4 Score=41.88 Aligned_cols=130 Identities=17% Similarity=0.197 Sum_probs=85.0
Q ss_pred hHHHHHHHHHchhCCCCCCCCHHHHHH--HHHHHHHcCCc-ccHHHHHHHHHHhHhccCCC-CCCHHHHHHHHHHHHHcC
Q 005912 46 PEVAFATFENMEYGEDYMKPDTETYNC--VIQAYTRAESY-DRVQDVAELLGMMVEDHKRL-QPNVKTYALLVECFTKYC 121 (670)
Q Consensus 46 ~e~A~~lf~~M~~~~~gi~Pd~~tyn~--LI~ay~k~g~~-~~~~eAl~lf~eM~~~~~gi-~Pd~~Ty~~LL~a~ak~g 121 (670)
+.+...+++.|. +.|+..+..+|-+ +|...+...++ ..+..|..+|+.|+++|..+ .++.++|+.||.. ...
T Consensus 78 ~~~~~~~y~~L~--~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~ 153 (297)
T PF13170_consen 78 FKEVLDIYEKLK--EAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSE 153 (297)
T ss_pred HHHHHHHHHHHH--HhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccc
Confidence 455677889999 8999999888766 44444333322 24778999999999976554 4678888888766 333
Q ss_pred C----HHHHHHHHHHHHHccCCC--cccccCCCCchHHHHHHHHHHHcCC--HHHHHHHHHHHhhCCCCCCCch
Q 005912 122 A----VTEAIRHFRALQNYEGGT--KVLHNEGNFGDPLSLYLRALCREGR--IIELLEALEAMAKDNQPVPPRA 187 (670)
Q Consensus 122 ~----~d~A~~lf~~M~~~g~~~--~v~~~~g~~pdtyn~LI~ay~k~G~--~eeA~~vf~~M~~~gi~i~p~~ 187 (670)
+ .+.++++|..+.+.|+.. ++. ..+.++...--... +..+.++++.+.++|+++.+..
T Consensus 154 ~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ--------~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~ 219 (297)
T PF13170_consen 154 DVEELAERMEQCYQKLADAGFKKGNDLQ--------FLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMH 219 (297)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCCcHHH--------HHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccccc
Confidence 3 356677888887766532 111 23333333221111 5578899999999999766654
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.31 E-value=3.4 Score=45.64 Aligned_cols=134 Identities=13% Similarity=0.072 Sum_probs=101.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCC-CCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCH
Q 005912 29 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDY-MKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV 107 (670)
Q Consensus 29 d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~g-i~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~ 107 (670)
-++.|.++|+.--|..-++.|+.+|-+.. ..+ +.+++..|+++|.-|+... ..-|.++|+-=.. -.||.
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~r--k~~~~~h~vyi~~A~~E~~~~~d----~~ta~~ifelGl~----~f~d~ 465 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLR--KEGIVGHHVYIYCAFIEYYATGD----RATAYNIFELGLL----KFPDS 465 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHh--ccCCCCcceeeeHHHHHHHhcCC----cchHHHHHHHHHH----hCCCc
Confidence 35678889999999999999999999998 666 7899999999999999876 5678899975332 24776
Q ss_pred HHH-HHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 005912 108 KTY-ALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKD 179 (670)
Q Consensus 108 ~Ty-~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~ 179 (670)
..| .-.+.-+...++-..|+.+|+..+.+--...+. ..|-.+|+-=..-|++..|..+=+.|...
T Consensus 466 ~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k-------~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 466 TLYKEKYLLFLIRINDEENARALFETSVERLEKTQLK-------RIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred hHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhh-------HHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 666 445666778899999999999544321111110 06888888888888888888777777654
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.01 E-value=1.5 Score=45.73 Aligned_cols=71 Identities=18% Similarity=0.138 Sum_probs=47.6
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh----------------HHHHHHHHHchhCCCCCCCCHHHHHH
Q 005912 9 GDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIP----------------EVAFATFENMEYGEDYMKPDTETYNC 72 (670)
Q Consensus 9 G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~----------------e~A~~lf~~M~~~~~gi~Pd~~tyn~ 72 (670)
+.++--..-++.|++.|+.-|..+|+.||+.+-+...+ +-+..++++|. ..|+-||-.+=-+
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME--~hGVmPdkE~e~~ 163 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQME--WHGVMPDKEIEDI 163 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHH--HcCCCCchHHHHH
Confidence 33444444456677777777777777777777666532 23567777777 6777777777777
Q ss_pred HHHHHHHcC
Q 005912 73 VIQAYTRAE 81 (670)
Q Consensus 73 LI~ay~k~g 81 (670)
||++|++.|
T Consensus 164 lvn~FGr~~ 172 (406)
T KOG3941|consen 164 LVNAFGRWN 172 (406)
T ss_pred HHHHhcccc
Confidence 777777776
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=89.98 E-value=55 Score=40.00 Aligned_cols=309 Identities=11% Similarity=-0.041 Sum_probs=164.3
Q ss_pred HHhcCChHHHHHHHHHHHHcC--C----CCCH--HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC----HHHHHH
Q 005912 5 DCKAGDHSNALEIAYEMEAAG--R----MATT--FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD----TETYNC 72 (670)
Q Consensus 5 y~k~G~~~~Al~lf~~M~~~G--v----~Pd~--~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd----~~tyn~ 72 (670)
+...|++++|..++......- . .|.. .....+-..+...|+++.|...+++... .--..+ ...++.
T Consensus 419 ~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~ 496 (903)
T PRK04841 419 AQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALA--ELPLTWYYSRIVATSV 496 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh--cCCCccHHHHHHHHHH
Confidence 456788999998888765421 0 1111 1112222345678999999999988652 111112 234566
Q ss_pred HHHHHHHcCCcccHHHHHHHHHHhHhccCCCC-C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCC
Q 005912 73 VIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ-P--NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNF 149 (670)
Q Consensus 73 LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~-P--d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~ 149 (670)
+-..+...| +.++|...+.+......... + -..++..+-..+...|+++.|...+.+.....-.... ...
T Consensus 497 lg~~~~~~G---~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~----~~~ 569 (903)
T PRK04841 497 LGEVHHCKG---ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHL----EQL 569 (903)
T ss_pred HHHHHHHcC---CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc----ccc
Confidence 666677788 78888888887754111111 1 1234555667788999999999998876652110000 000
Q ss_pred c-h--HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCC
Q 005912 150 G-D--PLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGG 226 (670)
Q Consensus 150 p-d--tyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g 226 (670)
+ . .+..+-..+...|++++|...+.+.....-...+.... ..+..+ .......|
T Consensus 570 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~l---------------------a~~~~~~G 626 (903)
T PRK04841 570 PMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQL--QCLAML---------------------AKISLARG 626 (903)
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHH--HHHHHH---------------------HHHHHHcC
Confidence 0 0 34455566777899999999998765432111221111 011111 11124456
Q ss_pred cHHHHHHHHHHhccCCCCCCcccchh-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHc
Q 005912 227 LTGERKRWVPRRGKTPLDPDAVGFIY-SNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKL 305 (670)
Q Consensus 227 ~~~~a~~lf~~m~~~gi~Pd~d~~ty-~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~ 305 (670)
..++|...+.......-.... +..+ ..+.......+...|+.+.|..++......... ...... .....+..
T Consensus 627 ~~~~A~~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~----~~~~~~-~~~~~~a~- 699 (903)
T PRK04841 627 DLDNARRYLNRLENLLGNGRY-HSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFA----NNHFLQ-GQWRNIAR- 699 (903)
T ss_pred CHHHHHHHHHHHHHHHhcccc-cHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCc----cchhHH-HHHHHHHH-
Confidence 777777776665321000000 0111 111111124446689999999997765432111 111100 00001111
Q ss_pred cCCCcccccccccCCHHHHHHHHHHHHh----CCCCCH--HHHHHHHHHHHHhCChhhhhc
Q 005912 306 IKGPEQHVLKPKAASKMVVSELKEELDA----QGLPTD--GTRNVLYQRVQKARRINRSRG 360 (670)
Q Consensus 306 ~~~p~~~~L~~~~g~~~~A~~l~~~M~~----~Gip~d--~t~~~Ll~a~~~aG~~~eA~~ 360 (670)
+....|...+|..++..... .|.+.. .+...+-.++.+.|+.++|..
T Consensus 700 --------~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~ 752 (903)
T PRK04841 700 --------AQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQR 752 (903)
T ss_pred --------HHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 00245667888888877654 344333 456666777788899888764
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=89.81 E-value=6.3 Score=37.66 Aligned_cols=95 Identities=8% Similarity=-0.075 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCccc
Q 005912 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP--NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVL 143 (670)
Q Consensus 66 d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P--d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~ 143 (670)
-...|..+...+...| +.++|+..|..... ....| ...+|..+-..|.+.|+.++|...+......... .
T Consensus 34 ~a~~~~~~g~~~~~~g---~~~~A~~~~~~al~--l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~--~- 105 (168)
T CHL00033 34 EAFTYYRDGMSAQSEG---EYAEALQNYYEAMR--LEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF--L- 105 (168)
T ss_pred HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHh--ccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--c-
Confidence 4566677777777777 67788888887765 22122 1346777777888888888888888877653211 1
Q ss_pred ccCCCCchHHHHHHHHHH-------HcCCHHHHHHHHH
Q 005912 144 HNEGNFGDPLSLYLRALC-------REGRIIELLEALE 174 (670)
Q Consensus 144 ~~~g~~pdtyn~LI~ay~-------k~G~~eeA~~vf~ 174 (670)
+.+++.+-..|. +.|++++|...++
T Consensus 106 ------~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 106 ------PQALNNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred ------HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 115555555555 7777775555554
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.69 E-value=58 Score=39.88 Aligned_cols=128 Identities=16% Similarity=0.253 Sum_probs=78.4
Q ss_pred HHHHHcCChHHHHHHHHHchhCCCCCCCCHHH-----HHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHH
Q 005912 38 SCQATCGIPEVAFATFENMEYGEDYMKPDTET-----YNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 112 (670)
Q Consensus 38 ~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~t-----yn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~ 112 (670)
+.|-+.|-...|++.|..+.. |++.++. =-.++.-+.... ++.+++.+..|.. .+++-|..+..-
T Consensus 614 qLCEKAGL~qraLehytDl~D----IKR~vVhth~L~pEwLv~yFg~ls----ve~s~eclkaml~--~NirqNlQi~VQ 683 (1666)
T KOG0985|consen 614 QLCEKAGLLQRALEHYTDLYD----IKRVVVHTHLLNPEWLVNYFGSLS----VEDSLECLKAMLS--ANIRQNLQIVVQ 683 (1666)
T ss_pred HHHHhcchHHHHHHhcccHHH----HHHHHHHhccCCHHHHHHHHHhcC----HHHHHHHHHHHHH--HHHHhhhHHHHH
Confidence 345556666666665555442 1111111 122334444443 6777788888888 788888887777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHccCC---CcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Q 005912 113 LVECFTKYCAVTEAIRHFRALQNYEGG---TKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEA 175 (670)
Q Consensus 113 LL~a~ak~g~~d~A~~lf~~M~~~g~~---~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~ 175 (670)
+-.-|+..=-.+...++|+.......- .....+....|++---.|.+-|+.|++.++.++-++
T Consensus 684 vatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicre 749 (1666)
T KOG0985|consen 684 VATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRE 749 (1666)
T ss_pred HHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhc
Confidence 777777766677777777776653220 001112344455666789999999999998887654
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=89.50 E-value=8.6 Score=35.46 Aligned_cols=111 Identities=14% Similarity=0.089 Sum_probs=78.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHH
Q 005912 33 FNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 112 (670)
Q Consensus 33 yn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~ 112 (670)
...+|..+...+.+.....+++.+. ..+ ..+...+|.+|..|++.+ ....+.+|.. . ++.+....
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~--~~~-~~~~~~~~~li~ly~~~~----~~~ll~~l~~--~------~~~yd~~~ 74 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESAL--KLN-SENPALQTKLIELYAKYD----PQKEIERLDN--K------SNHYDIEK 74 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH--ccC-ccchhHHHHHHHHHHHHC----HHHHHHHHHh--c------cccCCHHH
Confidence 4567888888888889999888887 444 367778899999998876 4455555542 1 23344556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHc-CCHHHHHHHHHH
Q 005912 113 LVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCRE-GRIIELLEALEA 175 (670)
Q Consensus 113 LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~-G~~eeA~~vf~~ 175 (670)
++..|-+.+.++++.-++..+.. |.-.|+.+... ++++.|.+.+..
T Consensus 75 ~~~~c~~~~l~~~~~~l~~k~~~-----------------~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 75 VGKLCEKAKLYEEAVELYKKDGN-----------------FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHHHHHHcCcHHHHHHHHHhhcC-----------------HHHHHHHHHHcccCHHHHHHHHHh
Confidence 88888888888888888877643 44455555555 778888887775
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=89.42 E-value=10 Score=36.11 Aligned_cols=114 Identities=10% Similarity=-0.018 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC--CHHHHHHHHHHHHHcCCcccHH
Q 005912 11 HSNALEIAYEME-AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP--DTETYNCVIQAYTRAESYDRVQ 87 (670)
Q Consensus 11 ~~~Al~lf~~M~-~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P--d~~tyn~LI~ay~k~g~~~~~~ 87 (670)
+..+...+..+. ..+..--...|..+...+...|++++|...|++... ....| ...+|..+=..|...| +.+
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~--l~~~~~~~~~~~~~lg~~~~~~g---~~~ 89 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMR--LEIDPYDRSYILYNIGLIHTSNG---EHT 89 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--ccccchhhHHHHHHHHHHHHHcC---CHH
Confidence 344445555552 333333456678888888889999999999999862 21122 2357888889999999 789
Q ss_pred HHHHHHHHhHhccCCCCCC-HHHHHHHHHHHH-------HcCCHHHHHHHHHHH
Q 005912 88 DVAELLGMMVEDHKRLQPN-VKTYALLVECFT-------KYCAVTEAIRHFRAL 133 (670)
Q Consensus 88 eAl~lf~eM~~~~~gi~Pd-~~Ty~~LL~a~a-------k~g~~d~A~~lf~~M 133 (670)
+|+..|..... +.|+ ..++..+...+. ..|+++.|...+...
T Consensus 90 eA~~~~~~Al~----~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 90 KALEYYFQALE----RNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHHHHHH----hCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 99999998876 2343 455666666666 778877666665543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=89.37 E-value=3.9 Score=44.60 Aligned_cols=90 Identities=13% Similarity=-0.002 Sum_probs=74.4
Q ss_pred HHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHH
Q 005912 38 SCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVEC 116 (670)
Q Consensus 38 ~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a 116 (670)
..+...|+++.|..+|++... .. .-+...|..+-.+|.+.| +.++|+..+..... +.| +...|..+-.+
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~--~~-P~~~~a~~~~a~~~~~~g---~~~eAl~~~~~Al~----l~P~~~~a~~~lg~~ 79 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAID--LD-PNNAELYADRAQANIKLG---NFTEAVADANKAIE----LDPSLAKAYLRKGTA 79 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHH--hC-CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH----hCcCCHHHHHHHHHH
Confidence 456678999999999999873 11 235678888888999999 88999999999977 345 56778888899
Q ss_pred HHHcCCHHHHHHHHHHHHHcc
Q 005912 117 FTKYCAVTEAIRHFRALQNYE 137 (670)
Q Consensus 117 ~ak~g~~d~A~~lf~~M~~~g 137 (670)
|.+.|++++|...|+...+..
T Consensus 80 ~~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 80 CMKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred HHHhCCHHHHHHHHHHHHHhC
Confidence 999999999999999988754
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=89.36 E-value=1 Score=35.80 Aligned_cols=63 Identities=21% Similarity=0.301 Sum_probs=39.8
Q ss_pred HHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHH
Q 005912 41 ATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 114 (670)
Q Consensus 41 ak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL 114 (670)
.+.|++++|..+|+.+.. ..| |...+-.+..+|.+.| +.++|..+|..... ..|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~----~~p~~~~~~~~la~~~~~~g---~~~~A~~~l~~~~~----~~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQ----RNPDNPEARLLLAQCYLKQG---QYDEAEELLERLLK----QDPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHH----HTTTSHHHHHHHHHHHHHTT----HHHHHHHHHCCHG----GGTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH----HCcCHHHHHHHH
Confidence 356777777777777652 123 5666667777777777 67777777777765 346655554443
|
... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=89.32 E-value=0.74 Score=42.97 Aligned_cols=75 Identities=16% Similarity=0.139 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhH---hccCCCCCCH
Q 005912 31 FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMV---EDHKRLQPNV 107 (670)
Q Consensus 31 ~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~---~~~~gi~Pd~ 107 (670)
.....++..+...|+++.|..+.+.+.. . -.-|-..|..+|.+|...| +...|++.|..+. ...-|+.|+.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~--~-dP~~E~~~~~lm~~~~~~g---~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALA--L-DPYDEEAYRLLMRALAAQG---RRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--H-STT-HHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHh--c-CCCCHHHHHHHHHHHHHCc---CHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 4567778888889999999999988873 1 1346778999999999999 6777777776652 1127888887
Q ss_pred HHHH
Q 005912 108 KTYA 111 (670)
Q Consensus 108 ~Ty~ 111 (670)
.|-.
T Consensus 137 ~~~~ 140 (146)
T PF03704_consen 137 ETRA 140 (146)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7644
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.17 E-value=12 Score=41.70 Aligned_cols=82 Identities=17% Similarity=0.159 Sum_probs=44.9
Q ss_pred cCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCC
Q 005912 43 CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCA 122 (670)
Q Consensus 43 ~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~ 122 (670)
-|++..|+++|++-. ...|+...|++.|+-=.+-. ..+.|..+|+..+- +.|++.+|---..-=-+.|+
T Consensus 154 LgNi~gaRqiferW~----~w~P~eqaW~sfI~fElRyk---eieraR~IYerfV~----~HP~v~~wikyarFE~k~g~ 222 (677)
T KOG1915|consen 154 LGNIAGARQIFERWM----EWEPDEQAWLSFIKFELRYK---EIERARSIYERFVL----VHPKVSNWIKYARFEEKHGN 222 (677)
T ss_pred hcccHHHHHHHHHHH----cCCCcHHHHHHHHHHHHHhh---HHHHHHHHHHHHhe----ecccHHHHHHHHHHHHhcCc
Confidence 455555555555422 13566666666666555555 45555555555533 34665555555544455666
Q ss_pred HHHHHHHHHHHHH
Q 005912 123 VTEAIRHFRALQN 135 (670)
Q Consensus 123 ~d~A~~lf~~M~~ 135 (670)
+..+..+|.....
T Consensus 223 ~~~aR~VyerAie 235 (677)
T KOG1915|consen 223 VALARSVYERAIE 235 (677)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655544
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=89.12 E-value=11 Score=34.39 Aligned_cols=103 Identities=17% Similarity=0.145 Sum_probs=68.8
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC----HHHHHHHHHHH
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATT--FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD----TETYNCVIQAY 77 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~--~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd----~~tyn~LI~ay 77 (670)
.+-..|+.++|+.+|++-...|..... ..+-.+-+.|-.-|++++|..+|+.... . .|+ ......+--++
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~--~--~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE--E--FPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--H--CCCccccHHHHHHHHHHH
Confidence 455679999999999999888876542 2333455667788999999999988763 1 133 12222233466
Q ss_pred HHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHH
Q 005912 78 TRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 119 (670)
Q Consensus 78 ~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak 119 (670)
...| +.++|+..+-.-.. ++...|.--|..|+.
T Consensus 86 ~~~g---r~~eAl~~~l~~la------~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 86 YNLG---RPKEALEWLLEALA------ETLPRYRRAIRFYAD 118 (120)
T ss_pred HHCC---CHHHHHHHHHHHHH------HHHHHHHHHHHHHHh
Confidence 7778 78888888876554 344466666666653
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=89.09 E-value=3.1 Score=38.69 Aligned_cols=90 Identities=16% Similarity=0.189 Sum_probs=60.6
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHcCCccChhcHHHHHHHHHcCCCcHHHHHHHHHhhhcCCccCcccHHHHHHHHhhhch
Q 005912 549 PPQKWSQEWEVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGE 628 (670)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (670)
++..|.......+--..+.-+ ..++.......-++.++++++..... ..++...|..+|.++...|+
T Consensus 45 ~~~~W~~~~r~~l~~~~~~~~------------~~l~~~~~~~~~~~~a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~ 111 (146)
T PF03704_consen 45 DDEEWVEPERERLRELYLDAL------------ERLAEALLEAGDYEEALRLLQRALAL-DPYDEEAYRLLMRALAAQGR 111 (146)
T ss_dssp TTSTTHHHHHHHHHHHHHHHH------------HHHHHHHHHTT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-
T ss_pred CccHHHHHHHHHHHHHHHHHH------------HHHHHHHHhccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcC
Confidence 335777666554433333322 34455666788888899999888765 56788999999999999999
Q ss_pred hHHHHHHHHHHH-----HhCCCCCchhH
Q 005912 629 LDAAVAIVADME-----TTGIAVPDQTL 651 (670)
Q Consensus 629 ~~~~~~~~~~~~-----~~~~~~~~~~~ 651 (670)
..+|+++...++ +-|+.|+++|-
T Consensus 112 ~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 112 RAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 999999887763 57999998874
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=89.04 E-value=42 Score=41.05 Aligned_cols=222 Identities=8% Similarity=0.002 Sum_probs=119.5
Q ss_pred CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHH-HHHHcCCcccHHHHHHHHHHhHhccCC
Q 005912 25 GRMA-TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQ-AYTRAESYDRVQDVAELLGMMVEDHKR 102 (670)
Q Consensus 25 Gv~P-d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~-ay~k~g~~~~~~eAl~lf~eM~~~~~g 102 (670)
++.| +...+-.|++.|-..+++++|..+.+.-.. ..|+...+-.+.. -|.+.+ +..++..+ .+.. -
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~----~~P~~i~~yy~~G~l~~q~~---~~~~~~lv--~~l~---~ 92 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLK----EHKKSISALYISGILSLSRR---PLNDSNLL--NLID---S 92 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----hCCcceehHHHHHHHHHhhc---chhhhhhh--hhhh---h
Confidence 4444 456778999999999999999999986542 2454433222222 444555 33333322 2211 1
Q ss_pred CCC-------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHc
Q 005912 103 LQP-------------------NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCRE 163 (670)
Q Consensus 103 i~P-------------------d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~ 163 (670)
+.. +...+-.+..+|-+.|+.+++..+++++.+.... +.. +.|-+-..|+..
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~--------aLNn~AY~~ae~ 163 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPE--------IVKKLATSYEEE 163 (906)
T ss_pred cccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHH--------HHHHHHHHHHHh
Confidence 111 1245555666777777777777777777765421 111 566666777777
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccC-C
Q 005912 164 GRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKT-P 242 (670)
Q Consensus 164 G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~-g 242 (670)
++++|.+++.....+.+ .-. -|+.+..-+.+++.. .-..++.-..+.+.+... |
T Consensus 164 -dL~KA~~m~~KAV~~~i--~~k------q~~~~~e~W~k~~~~----------------~~~d~d~f~~i~~ki~~~~~ 218 (906)
T PRK14720 164 -DKEKAITYLKKAIYRFI--KKK------QYVGIEEIWSKLVHY----------------NSDDFDFFLRIERKVLGHRE 218 (906)
T ss_pred -hHHHHHHHHHHHHHHHH--hhh------cchHHHHHHHHHHhc----------------CcccchHHHHHHHHHHhhhc
Confidence 77777777776655432 111 133333323222111 111222222233333221 1
Q ss_pred CCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHH
Q 005912 243 LDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLK 303 (670)
Q Consensus 243 i~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~ 303 (670)
..- ..-++..+...|-...+++++..+|+...+..-. +......+...+.
T Consensus 219 ~~~------~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-----n~~a~~~l~~~y~ 268 (906)
T PRK14720 219 FTR------LVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-----NNKAREELIRFYK 268 (906)
T ss_pred cch------hHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-----chhhHHHHHHHHH
Confidence 100 1122345668888999999999999999876554 3444444444444
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=88.92 E-value=24 Score=34.31 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=11.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 005912 153 LSLYLRALCREGRIIELLEALEA 175 (670)
Q Consensus 153 yn~LI~ay~k~G~~eeA~~vf~~ 175 (670)
+..+++.+...|++-+|.++.+.
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~ 114 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQ 114 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHH
Confidence 44455555555555555555544
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=88.41 E-value=9.9 Score=36.89 Aligned_cols=139 Identities=16% Similarity=0.202 Sum_probs=93.6
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHH
Q 005912 14 ALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELL 93 (670)
Q Consensus 14 Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf 93 (670)
-++..+.+.+.|+.|+...|..||+.+.+.|. ...+..+. ..++-+|...-...+-.+..... .-.+-|++.+
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~----~~~L~qll--q~~Vi~DSk~lA~~LLs~~~~~~-~~~Ql~lDML 85 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQ----FSQLHQLL--QYHVIPDSKPLACQLLSLGNQYP-PAYQLGLDML 85 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----HHHHHHHH--hhcccCCcHHHHHHHHHhHccCh-HHHHHHHHHH
Confidence 35666777788899999999999999999886 56777777 67888887777766655544320 0123344444
Q ss_pred HHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHH
Q 005912 94 GMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEAL 173 (670)
Q Consensus 94 ~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf 173 (670)
.++.. .|..++..+...|++-+|.++.+...... ++ ....++.+-.+.++..--..||
T Consensus 86 kRL~~----------~~~~iievLL~~g~vl~ALr~ar~~~~~~---~~---------~~~~fLeAA~~~~D~~lf~~V~ 143 (167)
T PF07035_consen 86 KRLGT----------AYEEIIEVLLSKGQVLEALRYARQYHKVD---SV---------PARKFLEAAANSNDDQLFYAVF 143 (167)
T ss_pred HHhhh----------hHHHHHHHHHhCCCHHHHHHHHHHcCCcc---cC---------CHHHHHHHHHHcCCHHHHHHHH
Confidence 44432 56677788888999988888876643211 11 3566888888888877766666
Q ss_pred HHHhhCCC
Q 005912 174 EAMAKDNQ 181 (670)
Q Consensus 174 ~~M~~~gi 181 (670)
+-..+++.
T Consensus 144 ~ff~~~n~ 151 (167)
T PF07035_consen 144 RFFEERNL 151 (167)
T ss_pred HHHHHhhH
Confidence 66555543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=88.20 E-value=36 Score=35.59 Aligned_cols=62 Identities=24% Similarity=0.223 Sum_probs=39.6
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHHccCCCcccccCCCCc----hHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 005912 113 LVECFTKY-CAVTEAIRHFRALQNYEGGTKVLHNEGNFG----DPLSLYLRALCREGRIIELLEALEAMAKDNQ 181 (670)
Q Consensus 113 LL~a~ak~-g~~d~A~~lf~~M~~~g~~~~v~~~~g~~p----dtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi 181 (670)
+-..|-+. |+++.|.+.|......-.. .+ .+ ..+.-+...+.+.|++++|.++|++....-.
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~------e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l 186 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQ------EG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCL 186 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHH------TT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHH------CC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence 33345555 7788888888776642100 01 01 1677788899999999999999999877644
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=87.54 E-value=12 Score=34.51 Aligned_cols=108 Identities=12% Similarity=0.051 Sum_probs=72.9
Q ss_pred CHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHc
Q 005912 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 80 (670)
Q Consensus 1 LI~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~ 80 (670)
+|..+.+.+....+..+++.+...|. .+...+|.||..|++.. ..+....|.. ..+.....-++.-|-+.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~--------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN--------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh--------ccccCCHHHHHHHHHHc
Confidence 36677778899999999999988874 78889999999999874 4444555542 12233334477777777
Q ss_pred CCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHH
Q 005912 81 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY-CAVTEAIRHFRA 132 (670)
Q Consensus 81 g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~-g~~d~A~~lf~~ 132 (670)
+ ..+++.-++..+.. |.-.+..+.+. ++++.|.+++..
T Consensus 83 ~---l~~~~~~l~~k~~~-----------~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 83 K---LYEEAVELYKKDGN-----------FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred C---cHHHHHHHHHhhcC-----------HHHHHHHHHHcccCHHHHHHHHHh
Confidence 7 66777777777633 22233333333 777777777765
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=87.42 E-value=64 Score=37.56 Aligned_cols=98 Identities=16% Similarity=0.220 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHH
Q 005912 152 PLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGER 231 (670)
Q Consensus 152 tyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a 231 (670)
++-.++..|-+.|+++.|...++.-..+ +|+.+ --.+-. .+.++|.|.+.+|
T Consensus 373 t~y~laqh~D~~g~~~~A~~yId~AIdH----TPTli------Ely~~K------------------aRI~kH~G~l~eA 424 (700)
T KOG1156|consen 373 TLYFLAQHYDKLGDYEVALEYIDLAIDH----TPTLI------ELYLVK------------------ARIFKHAGLLDEA 424 (700)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhcc----CchHH------HHHHHH------------------HHHHHhcCChHHH
Confidence 5566788888999999999998876554 34322 111100 1446899999999
Q ss_pred HHHHHHhccCCCCCCcccchhhhhHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 005912 232 KRWVPRRGKTPLDPDAVGFIYSNPME-TSFKQRCLEDGKKYHRKLLRTLQNEGPA 285 (670)
Q Consensus 232 ~~lf~~m~~~gi~Pd~d~~ty~~LIe-~lv~~~~~~G~~e~A~~Lf~~M~~~gv~ 285 (670)
..|++...... .||. + |+ -+++-..+++++++|..+.......|..
T Consensus 425 a~~l~ea~elD-~aDR--~-----INsKcAKYmLrAn~i~eA~~~~skFTr~~~~ 471 (700)
T KOG1156|consen 425 AAWLDEAQELD-TADR--A-----INSKCAKYMLRANEIEEAEEVLSKFTREGFG 471 (700)
T ss_pred HHHHHHHHhcc-chhH--H-----HHHHHHHHHHHccccHHHHHHHHHhhhcccc
Confidence 99999876531 1333 3 22 4667778999999999998888777753
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=87.29 E-value=76 Score=38.29 Aligned_cols=55 Identities=20% Similarity=0.060 Sum_probs=27.7
Q ss_pred HhcCCHHHHHHHH-HHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHHhCC
Q 005912 264 CLEDGKKYHRKLL-RTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQG 335 (670)
Q Consensus 264 ~~~G~~e~A~~Lf-~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~G 335 (670)
-..|+.++|+.++ ....+.-.. .+..-.+..++.+....+ |.+..++-.++...|
T Consensus 201 ~~~~k~~eal~~l~~~la~~l~~----~~~~l~~~~~dllk~l~~-------------w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 201 ELQGKYQEALEFLAITLAEKLTS----ANLYLENKKLDLLKLLNR-------------WQELFELSSRLLEKG 256 (932)
T ss_pred HhcccHHHHHHHHHHHHHHhccc----cchHHHHHHHHHHHHhcC-------------hHHHHHHHHHHHHhC
Confidence 4566677777776 333333222 333333344444444333 555555555555555
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=86.63 E-value=45 Score=34.93 Aligned_cols=84 Identities=11% Similarity=0.007 Sum_probs=46.2
Q ss_pred HHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHH
Q 005912 220 RYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSN-PMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRV 298 (670)
Q Consensus 220 ~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~-LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~ 298 (670)
.++...|..++|..+|+.........+...+.... ++.++ -.+...|+...|.+.|+........-.+.........+
T Consensus 163 ~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~-l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l 241 (282)
T PF14938_consen 163 DLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAI-LCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDL 241 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHH-HHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHH
Confidence 44677789999999999886654333321122221 23333 24455789999999999987553221111223344455
Q ss_pred HHHHHH
Q 005912 299 EERLKK 304 (670)
Q Consensus 299 l~~l~k 304 (670)
++++..
T Consensus 242 ~~A~~~ 247 (282)
T PF14938_consen 242 LEAYEE 247 (282)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 555554
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=86.17 E-value=44 Score=34.38 Aligned_cols=163 Identities=12% Similarity=0.108 Sum_probs=103.4
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC-HHHHH---HHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHH-
Q 005912 5 DCKAGDHSNALEIAYEMEAAGRMAT-TFHFN---HLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR- 79 (670)
Q Consensus 5 y~k~G~~~~Al~lf~~M~~~Gv~Pd-~~tyn---~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k- 79 (670)
+.+.|++++|.+.|+.+... -|+ ....+ .|..+|-+.++++.|...|++..+ ..+-.|++ -|-..+.|.+.
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~-~~P~~~~~-~~a~Y~~g~~~~ 117 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR-LNPTHPNI-DYVLYMRGLTNM 117 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCcCCCch-HHHHHHHHHhhh
Confidence 45689999999999999874 333 33332 344677889999999999999874 33334443 45555555442
Q ss_pred -cC---------------CcccHHHHHHHHHHhHhcc--CCCCCCHHHHHH------------HHHHHHHcCCHHHHHHH
Q 005912 80 -AE---------------SYDRVQDVAELLGMMVEDH--KRLQPNVKTYAL------------LVECFTKYCAVTEAIRH 129 (670)
Q Consensus 80 -~g---------------~~~~~~eAl~lf~eM~~~~--~gi~Pd~~Ty~~------------LL~a~ak~g~~d~A~~l 129 (670)
.+ +......|+..|.+..+.. +...|+....-. +..-|-+.|.+.-|..-
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r 197 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNR 197 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence 11 1112567888888887631 111122222111 22336678888888888
Q ss_pred HHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 005912 130 FRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMA 177 (670)
Q Consensus 130 f~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~ 177 (670)
|+.+.+.-..... .++..-.|+.+|.+.|..++|..+...+.
T Consensus 198 ~~~v~~~Yp~t~~------~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 198 VEQMLRDYPDTQA------TRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHCCCCch------HHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 8888875332211 12277788999999999999988877653
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=86.10 E-value=20 Score=38.17 Aligned_cols=128 Identities=12% Similarity=0.163 Sum_probs=86.4
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--cC----ChHHHHHHHHHchhCCCC--CCCCHHHHHHHHHHHHHcCC
Q 005912 11 HSNALEIAYEMEAAGRMATTFHFNHLLSCQAT--CG----IPEVAFATFENMEYGEDY--MKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 11 ~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak--~G----~~e~A~~lf~~M~~~~~g--i~Pd~~tyn~LI~ay~k~g~ 82 (670)
+.+.+.+++.|++.|+.-+.++|=+..-.... .. ...+|..+|+.|++ ... -.++-.++.+|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk-~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKK-KHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-hCccccCccchhHHHHHhc--cccc
Confidence 56778899999999999998888553333333 22 36789999999995 222 25677888888777 3332
Q ss_pred cc-cHHHHHHHHHHhHhccCCCCCCH--HHHHHHHHHHHHcCC--HHHHHHHHHHHHHccCCCccc
Q 005912 83 YD-RVQDVAELLGMMVEDHKRLQPNV--KTYALLVECFTKYCA--VTEAIRHFRALQNYEGGTKVL 143 (670)
Q Consensus 83 ~~-~~~eAl~lf~eM~~~~~gi~Pd~--~Ty~~LL~a~ak~g~--~d~A~~lf~~M~~~g~~~~v~ 143 (670)
.+ .++.+..+|..+.. .|+..+. ...+.+|..+..... +..+.+++..+.+.+..+.-.
T Consensus 155 ~e~l~~~~E~~Y~~L~~--~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~ 218 (297)
T PF13170_consen 155 VEELAERMEQCYQKLAD--AGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYM 218 (297)
T ss_pred HHHHHHHHHHHHHHHHH--hCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccc
Confidence 22 25678888999888 7887743 334444444332222 457888999999988765544
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=85.91 E-value=3.2 Score=32.68 Aligned_cols=58 Identities=21% Similarity=0.164 Sum_probs=46.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 114 VECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 114 L~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
-..+.+.|++++|..+|+.+.+.... .++.+..+-..|.+.|++++|..+|+...+..
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~---------~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPD---------NPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTT---------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45678999999999999999886421 12278889999999999999999999987654
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=85.70 E-value=51 Score=36.91 Aligned_cols=166 Identities=15% Similarity=0.094 Sum_probs=99.3
Q ss_pred HcCChHHHHHHHHHchhCCCCCCCC----HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHH
Q 005912 42 TCGIPEVAFATFENMEYGEDYMKPD----TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 117 (670)
Q Consensus 42 k~G~~e~A~~lf~~M~~~~~gi~Pd----~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ 117 (670)
+.+++.+|..+|-++-+ +..-.|. -+.-+-+|+||..++ .+.....+.+..+ ..| ...|-.|..+.
T Consensus 18 kq~~~~esEkifskI~~-e~~~~~f~lkeEvl~grilnAffl~n----ld~Me~~l~~l~~----~~~-~s~~l~LF~~L 87 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYD-EKESSPFLLKEEVLGGRILNAFFLNN----LDLMEKQLMELRQ----QFG-KSAYLPLFKAL 87 (549)
T ss_pred HHhhhhHHHHHHHHHHH-HhhcchHHHHHHHHhhHHHHHHHHhh----HHHHHHHHHHHHH----hcC-CchHHHHHHHH
Confidence 56788999999888763 1111111 344678999999887 6666666666655 234 34455555554
Q ss_pred H--HcCCHHHHHHHHHHHHHc--cCCCcccc-c-CCCCch--HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC--CCCch
Q 005912 118 T--KYCAVTEAIRHFRALQNY--EGGTKVLH-N-EGNFGD--PLSLYLRALCREGRIIELLEALEAMAKDNQP--VPPRA 187 (670)
Q Consensus 118 a--k~g~~d~A~~lf~~M~~~--g~~~~v~~-~-~g~~pd--tyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~--i~p~~ 187 (670)
. +.+..+.|.+.+..-..+ +..+.... + +...++ .=+..++++...|++.++..+++.|..+=.+ -.|++
T Consensus 88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~ 167 (549)
T PF07079_consen 88 VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNS 167 (549)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccH
Confidence 3 788999999999887765 22221110 0 112222 3456788889999999999999988765431 14777
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHcCCCHHH
Q 005912 188 MILSRKYRTLVSSWIEPLQEEAELGYEIDY 217 (670)
Q Consensus 188 ~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~ 217 (670)
-+++++.--+-++++--+.+.....+.|+.
T Consensus 168 d~yd~~vlmlsrSYfLEl~e~~s~dl~pdy 197 (549)
T PF07079_consen 168 DMYDRAVLMLSRSYFLELKESMSSDLYPDY 197 (549)
T ss_pred HHHHHHHHHHhHHHHHHHHHhcccccChHH
Confidence 652222222333343233333444555664
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=85.42 E-value=12 Score=39.13 Aligned_cols=101 Identities=13% Similarity=0.075 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcc
Q 005912 67 TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV----KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKV 142 (670)
Q Consensus 67 ~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~----~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v 142 (670)
...|+.-+.-+.+.| +.++|+..|...... .|+. ..+--+-.+|...|+++.|...|..+.+.-..
T Consensus 143 ~~~Y~~A~~l~~~~~---~y~~Ai~af~~fl~~----yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~--- 212 (263)
T PRK10803 143 NTDYNAAIALVQDKS---RQDDAIVAFQNFVKK----YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK--- 212 (263)
T ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHHHH----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---
Confidence 455777776666778 678999999998772 3543 46667788889999999999999999875322
Q ss_pred cccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 143 LHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 143 ~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
....|+.+-.+...|...|+.++|..+|+...+..
T Consensus 213 ---s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 213 ---SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred ---CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 12223455556777889999999999999998764
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=85.35 E-value=12 Score=38.97 Aligned_cols=101 Identities=11% Similarity=0.081 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCH----HHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC
Q 005912 30 TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT----ETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 105 (670)
Q Consensus 30 ~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~----~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P 105 (670)
...|+..+..+.+.|++++|...|+.+.. . .|+. ..+-.+-..|...| +.++|...|..+.....+-..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~--~--yP~s~~a~~A~y~LG~~y~~~g---~~~~A~~~f~~vv~~yP~s~~ 215 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVK--K--YPDSTYQPNANYWLGQLNYNKG---KKDDAAYYFASVVKNYPKSPK 215 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--H--CcCCcchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHCCCCcc
Confidence 45678888777888999999999999874 1 2432 46677888889999 788999999999863111111
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcc
Q 005912 106 NVKTYALLVECFTKYCAVTEAIRHFRALQNYE 137 (670)
Q Consensus 106 d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g 137 (670)
....+-.+..++...|+.+.|..+|+.+.+..
T Consensus 216 ~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 216 AADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 23334445567778999999999999888753
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=85.23 E-value=72 Score=38.50 Aligned_cols=75 Identities=19% Similarity=0.243 Sum_probs=56.7
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcc
Q 005912 5 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 84 (670)
Q Consensus 5 y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~ 84 (670)
+.|.|+.++|+.+++....-+.. |..|..+|-..|-..+..++|..+|++..+ ..|+-..-..+..+|++.++|.
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~----~~P~eell~~lFmayvR~~~yk 127 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQ----KYPSEELLYHLFMAYVREKSYK 127 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHh----hCCcHHHHHHHHHHHHHHHHHH
Confidence 45678888888887777655444 788888888888888888888888888762 3567777777788888877553
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=85.14 E-value=4 Score=32.12 Aligned_cols=18 Identities=28% Similarity=0.159 Sum_probs=7.8
Q ss_pred HHHcCChHHHHHHHHHch
Q 005912 40 QATCGIPEVAFATFENME 57 (670)
Q Consensus 40 yak~G~~e~A~~lf~~M~ 57 (670)
|.+.|++++|..+|++..
T Consensus 7 ~~~~g~~~~A~~~~~~~l 24 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQAL 24 (65)
T ss_dssp HHHCTHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 334444444444444444
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=84.81 E-value=3.6 Score=33.69 Aligned_cols=66 Identities=18% Similarity=0.195 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcc--CCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 005912 108 KTYALLVECFTKYCAVTEAIRHFRALQNYE--GGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMA 177 (670)
Q Consensus 108 ~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g--~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~ 177 (670)
.+|+.+-..|...|++++|+..|+...... .+++- .....+++.|-..|.+.|++++|.++|++-.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~----~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDH----PDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHH----HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 577888888999999999999998877531 11100 0001188899999999999999999998753
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=84.72 E-value=63 Score=37.23 Aligned_cols=142 Identities=15% Similarity=0.025 Sum_probs=95.4
Q ss_pred cCCCCCHHHHHHHHHHHHHc--C---ChHHHHHHHHHchhCCCCCCCC-HHHHHHHHHHHHHcCCcc-----cHHHHHHH
Q 005912 24 AGRMATTFHFNHLLSCQATC--G---IPEVAFATFENMEYGEDYMKPD-TETYNCVIQAYTRAESYD-----RVQDVAEL 92 (670)
Q Consensus 24 ~Gv~Pd~~tyn~LI~~yak~--G---~~e~A~~lf~~M~~~~~gi~Pd-~~tyn~LI~ay~k~g~~~-----~~~eAl~l 92 (670)
.+...|...|...+.+.... + ....|..+|++... ..|| ...|..+-.+|.....+. ....+.+.
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~----ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~ 406 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK----SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTE 406 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 34567889999999886543 2 37799999999873 3566 344555444443322121 13344444
Q ss_pred HHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHH
Q 005912 93 LGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEA 172 (670)
Q Consensus 93 f~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~v 172 (670)
....... .....+..+|..+--.+...|++++|...++....... +.. .|..+-..|...|+.++|...
T Consensus 407 ~~~a~al-~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p--s~~--------a~~~lG~~~~~~G~~~eA~~~ 475 (517)
T PRK10153 407 LDNIVAL-PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM--SWL--------NYVLLGKVYELKGDNRLAADA 475 (517)
T ss_pred HHHhhhc-ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CHH--------HHHHHHHHHHHcCCHHHHHHH
Confidence 4443220 11233557777776666678999999999999988652 222 799999999999999999999
Q ss_pred HHHHhhCC
Q 005912 173 LEAMAKDN 180 (670)
Q Consensus 173 f~~M~~~g 180 (670)
|+.-...+
T Consensus 476 ~~~A~~L~ 483 (517)
T PRK10153 476 YSTAFNLR 483 (517)
T ss_pred HHHHHhcC
Confidence 99876665
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.67 E-value=1.2e+02 Score=37.37 Aligned_cols=131 Identities=14% Similarity=0.127 Sum_probs=89.2
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCccc
Q 005912 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 85 (670)
Q Consensus 6 ~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~ 85 (670)
..++-+++|..+|++..- +....+.||.- .+.++.|.+.-++.. +| ..|+.+-++-.+.| .
T Consensus 1059 i~~~LyEEAF~ifkkf~~-----n~~A~~VLie~---i~~ldRA~efAe~~n------~p--~vWsqlakAQL~~~---~ 1119 (1666)
T KOG0985|consen 1059 IENQLYEEAFAIFKKFDM-----NVSAIQVLIEN---IGSLDRAYEFAERCN------EP--AVWSQLAKAQLQGG---L 1119 (1666)
T ss_pred hhhhHHHHHHHHHHHhcc-----cHHHHHHHHHH---hhhHHHHHHHHHhhC------Ch--HHHHHHHHHHHhcC---c
Confidence 445667777777766542 44444555543 567777777777666 33 45888888888888 7
Q ss_pred HHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCC
Q 005912 86 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGR 165 (670)
Q Consensus 86 ~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~ 165 (670)
+.+|++-|-+- -|...|.-++..+.+.|.+++-.+.+.-.+++.-.|. .=+.||-+|++.++
T Consensus 1120 v~dAieSyika--------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~----------id~eLi~AyAkt~r 1181 (1666)
T KOG0985|consen 1120 VKDAIESYIKA--------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY----------IDSELIFAYAKTNR 1181 (1666)
T ss_pred hHHHHHHHHhc--------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc----------chHHHHHHHHHhch
Confidence 77877766322 3556788888888888888888887766555443333 34678888888888
Q ss_pred HHHHHHHH
Q 005912 166 IIELLEAL 173 (670)
Q Consensus 166 ~eeA~~vf 173 (670)
+.+..+++
T Consensus 1182 l~elE~fi 1189 (1666)
T KOG0985|consen 1182 LTELEEFI 1189 (1666)
T ss_pred HHHHHHHh
Confidence 87766654
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=83.42 E-value=70 Score=34.42 Aligned_cols=159 Identities=8% Similarity=0.002 Sum_probs=103.3
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcC-ChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcC
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATT-FHFNHLLSCQATCG-IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 81 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~-~tyn~LI~~yak~G-~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g 81 (670)
.+...++.++|+.+..+..+. .|+. ..|+.-=..+...| .++++...++++.. . -..+...|+----.+.+.|
T Consensus 46 ~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~--~-npknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAE--D-NPKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH--H-CCcchHHhHHHHHHHHHcC
Confidence 345567888899888888764 3433 23443333444556 57999999999872 2 2345566775544455555
Q ss_pred CcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHH
Q 005912 82 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALC 161 (670)
Q Consensus 82 ~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~ 161 (670)
.. ...+++.++..|.+ .. .-|..+|+..-.++.+.|+++++++.+..+.+..+...- +|+-.--.+.
T Consensus 121 ~~-~~~~el~~~~kal~--~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~s---------AW~~R~~vl~ 187 (320)
T PLN02789 121 PD-AANKELEFTRKILS--LD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNS---------AWNQRYFVIT 187 (320)
T ss_pred ch-hhHHHHHHHHHHHH--hC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchh---------HHHHHHHHHH
Confidence 21 13678899989987 22 236789999999999999999999999999986543322 5665544444
Q ss_pred Hc---CCH----HHHHHHHHHHhhCC
Q 005912 162 RE---GRI----IELLEALEAMAKDN 180 (670)
Q Consensus 162 k~---G~~----eeA~~vf~~M~~~g 180 (670)
+. |.. +++...........
T Consensus 188 ~~~~l~~~~~~~e~el~y~~~aI~~~ 213 (320)
T PLN02789 188 RSPLLGGLEAMRDSELKYTIDAILAN 213 (320)
T ss_pred hccccccccccHHHHHHHHHHHHHhC
Confidence 43 222 45666665665544
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=82.84 E-value=28 Score=39.22 Aligned_cols=151 Identities=10% Similarity=0.058 Sum_probs=95.5
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCc
Q 005912 6 CKAGDHSNALEIAYEMEAAGRMA--TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESY 83 (670)
Q Consensus 6 ~k~G~~~~Al~lf~~M~~~Gv~P--d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~ 83 (670)
.-.|+++.+.++.+. ..+.| ...-.+.++..+-+.|.++.|+.+-..-. .=..-..+.|
T Consensus 272 v~~~d~~~v~~~i~~---~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~--------------~rFeLAl~lg-- 332 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAA---SNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPD--------------HRFELALQLG-- 332 (443)
T ss_dssp HHTT-HHH-----HH---HHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH--------------HHHHHHHHCT--
T ss_pred HHcCChhhhhhhhhh---hhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChH--------------HHhHHHHhcC--
Confidence 345666665555431 11111 23447888888889999999888764432 2233345677
Q ss_pred ccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHc
Q 005912 84 DRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCRE 163 (670)
Q Consensus 84 ~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~ 163 (670)
+++.|+++-.+ .++...|..|-....+.|+++.|++.|..... |..|+=.|.-.
T Consensus 333 -~L~~A~~~a~~--------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----------------~~~L~lLy~~~ 386 (443)
T PF04053_consen 333 -NLDIALEIAKE--------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD-----------------FSGLLLLYSST 386 (443)
T ss_dssp --HHHHHHHCCC--------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT------------------HHHHHHHHHHC
T ss_pred -CHHHHHHHHHh--------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----------------ccccHHHHHHh
Confidence 67777655432 35778999999999999999999999987654 78888899999
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHH
Q 005912 164 GRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEP 204 (670)
Q Consensus 164 G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~l 204 (670)
|+.+...++-+.-..+|- .+....++.+.+-+..|+++
T Consensus 387 g~~~~L~kl~~~a~~~~~---~n~af~~~~~lgd~~~cv~l 424 (443)
T PF04053_consen 387 GDREKLSKLAKIAEERGD---INIAFQAALLLGDVEECVDL 424 (443)
T ss_dssp T-HHHHHHHHHHHHHTT----HHHHHHHHHHHT-HHHHHHH
T ss_pred CCHHHHHHHHHHHHHccC---HHHHHHHHHHcCCHHHHHHH
Confidence 999888888888777773 55555444555555556544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=82.25 E-value=13 Score=35.30 Aligned_cols=95 Identities=12% Similarity=0.193 Sum_probs=72.9
Q ss_pred HHHcCCCCCHHH--HHHHHHHHHHcCChHHHHHHHHHchhC-CCCC--CCCHHHHHHHHHHHHHcCCccc-HHHHHHHHH
Q 005912 21 MEAAGRMATTFH--FNHLLSCQATCGIPEVAFATFENMEYG-EDYM--KPDTETYNCVIQAYTRAESYDR-VQDVAELLG 94 (670)
Q Consensus 21 M~~~Gv~Pd~~t--yn~LI~~yak~G~~e~A~~lf~~M~~~-~~gi--~Pd~~tyn~LI~ay~k~g~~~~-~~eAl~lf~ 94 (670)
|.+.+..+++.+ .|++++-.+..++..-...+++.+... ...+ ..+..+|++++++.++.. - ---++.+|.
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSs---SaK~~~~~Lf~ 104 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSS---SAKLTSLTLFN 104 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccCh---HHHHHHHHHHH
Confidence 344566666544 499999999999999999998888630 0000 345678999999997776 3 345788999
Q ss_pred HhHhccCCCCCCHHHHHHHHHHHHHc
Q 005912 95 MMVEDHKRLQPNVKTYALLVECFTKY 120 (670)
Q Consensus 95 eM~~~~~gi~Pd~~Ty~~LL~a~ak~ 120 (670)
-|++ .+.+++..-|..+|.+|.+-
T Consensus 105 ~Lk~--~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 105 FLKK--NDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HHHH--cCCCCCHHHHHHHHHHHHcC
Confidence 9998 78999999999999998765
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=81.31 E-value=7.5 Score=30.83 Aligned_cols=64 Identities=19% Similarity=0.167 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcC-CHHHHHHHHHHHhh
Q 005912 106 NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREG-RIIELLEALEAMAK 178 (670)
Q Consensus 106 d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G-~~eeA~~vf~~M~~ 178 (670)
+..+|..+-..+.+.|++++|+..|....+.... + +..|..+=.+|.+.| ++++|...|+...+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~--------~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-N--------AEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-H--------HHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-C--------HHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4567888888999999999999999998885322 1 127888888899999 79999999987654
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=80.62 E-value=46 Score=30.41 Aligned_cols=89 Identities=12% Similarity=0.095 Sum_probs=64.0
Q ss_pred HHHHHcCChHHHHHHHHHchhCCCCCCCC--HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC---H-HHHH
Q 005912 38 SCQATCGIPEVAFATFENMEYGEDYMKPD--TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN---V-KTYA 111 (670)
Q Consensus 38 ~~yak~G~~e~A~~lf~~M~~~~~gi~Pd--~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd---~-~Ty~ 111 (670)
.++-..|+.++|..+|++-. ..|+... ...+--+-++|...| +.++|+.+|.+... . .|+ . ....
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al--~~gL~~~~~~~a~i~lastlr~LG---~~deA~~~L~~~~~--~--~p~~~~~~~l~~ 79 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRAL--AAGLSGADRRRALIQLASTLRNLG---RYDEALALLEEALE--E--FPDDELNAALRV 79 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHH--HcCCCchHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH--H--CCCccccHHHHH
Confidence 35567899999999999988 6676554 345556667788888 89999999999876 2 244 1 1122
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 005912 112 LLVECFTKYCAVTEAIRHFRALQN 135 (670)
Q Consensus 112 ~LL~a~ak~g~~d~A~~lf~~M~~ 135 (670)
.+-.++...|+.++|.+.+-....
T Consensus 80 f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 80 FLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 233477789999999998865443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=80.52 E-value=73 Score=32.72 Aligned_cols=176 Identities=13% Similarity=0.093 Sum_probs=101.7
Q ss_pred HHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCH--HHH--HHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCC
Q 005912 73 VIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV--KTY--ALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGN 148 (670)
Q Consensus 73 LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~--~Ty--~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~ 148 (670)
.-..+.+.| +.++|.+.|++... . -|+. ... -.+..+|-+.++.+.|...|+...+..+...-+
T Consensus 38 ~A~~~~~~g---~y~~Ai~~f~~l~~--~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~----- 105 (243)
T PRK10866 38 TAQQKLQDG---NWKQAITQLEALDN--R--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI----- 105 (243)
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHH--h--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-----
Confidence 444456678 68899999999987 2 3433 221 234567789999999999999998764322111
Q ss_pred CchHHHHHHHHHHH--cC---------------C---HHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHH-H
Q 005912 149 FGDPLSLYLRALCR--EG---------------R---IIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQ-E 207 (670)
Q Consensus 149 ~pdtyn~LI~ay~k--~G---------------~---~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~-~ 207 (670)
.|...+.+++. .+ + ..+|+..|+.+.++- |++- |......-+..++ .
T Consensus 106 ---~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y----P~S~-----ya~~A~~rl~~l~~~ 173 (243)
T PRK10866 106 ---DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY----PNSQ-----YTTDATKRLVFLKDR 173 (243)
T ss_pred ---HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC----cCCh-----hHHHHHHHHHHHHHH
Confidence 45566666552 11 1 345777788877764 3432 4333333332222 2
Q ss_pred HHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhc-cCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005912 208 EAELGYEIDYIARYISEGGLTGERKRWVPRRG-KTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQ 280 (670)
Q Consensus 208 m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~-~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~ 280 (670)
+.+..+ .|..++-+.|....|..=|+.+. .+ |+.. ++ --.+-.+..+|...|..+.|......+.
T Consensus 174 la~~e~---~ia~~Y~~~~~y~AA~~r~~~v~~~Y---p~t~-~~-~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 LAKYEL---SVAEYYTKRGAYVAVVNRVEQMLRDY---PDTQ-AT-RDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHH---HHHHHHHHcCchHHHHHHHHHHHHHC---CCCc-hH-HHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 222222 34454555556666666666665 45 3321 11 1122246688999999999988776554
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=80.07 E-value=10 Score=30.07 Aligned_cols=63 Identities=24% Similarity=0.341 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Q 005912 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYC-AVTEAIRHFRALQN 135 (670)
Q Consensus 66 d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g-~~d~A~~lf~~M~~ 135 (670)
+..+|..+=..+.+.| +.++|+..|.+..+ +.| +...|..+-.+|.+.| ++++|.+.+....+
T Consensus 2 ~a~~~~~~g~~~~~~~---~~~~A~~~~~~ai~----~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQG---DYEEAIEYFEKAIE----LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTT---HHHHHHHHHHHHHH----HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4667888888899999 88899999998877 345 4567788888888999 79999999887765
|
... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.7 bits (167), Expect = 4e-12
Identities = 81/544 (14%), Positives = 158/544 (29%), Gaps = 157/544 (28%)
Query: 66 DTET------YNCVIQAYTRA--ESYDRVQDVAELLGMMVE----DHKRLQPNVKTYALL 113
D ET Y ++ + A +++D +DV ++ ++ DH + + + L
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFD-CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 114 VECFTKYCAV-TEAIRHF--RALQ-NYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIEL 169
+ F + E ++ F L+ NY+ + E P
Sbjct: 67 L--FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR--QP----------SMMTRMY 112
Query: 170 LEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTG 229
+E + + DNQ + + Y L + L+ + G+ G
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKL-RQALLELRPA-------KNVLID----GVLG 160
Query: 230 ERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKY---------HRKLLRTLQ 280
GKT + D S+K +C D K + +L LQ
Sbjct: 161 S--------GKTWVALDVC---------LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203
Query: 281 N------EGPAVLGDVSESDYVRVEE---RLKKLIKGPEQHVLKPKAASKMVVSEL--KE 329
D S + +R+ L++L+K KP +V+ + +
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK------SKPYENCLLVLLNVQNAK 257
Query: 330 ELDA-----QGLPTDGTRNV-LYQRVQKARRINRSRGRPLWVPPVEEEEEE------VDE 377
+A + L T TR + + A + S + +E + +D
Sbjct: 258 AWNAFNLSCKILLT--TRFKQVTDFLSAATTTHISLDHHSM--TLTPDEVKSLLLKYLDC 313
Query: 378 EVDEL-----------ISRI--KLEEGNT--EFWKRRFLGEGLNGRHDKAVEM-----DE 417
+L +S I + +G + WK + +E +
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN-----CDKLTTIIESSLNVLEP 368
Query: 418 SELSD------VLDDDV---TDV-EYVAKDEEADEEEEVEQAEPESQDVDRVKEKLVEAK 467
+E V T + + D + V K LVE +
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN--------KLHKYSLVEKQ 420
Query: 468 KPLQMIGVQLLKDSDQTTTTSKRSMKRSSRMVEDDDDEDWFPEDPFEAFKEMRKRKVFDV 527
I + + + ++ ++ R +V+ + F D
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHR--SIVDHYNIPKTFDSDDLIP----------PY 468
Query: 528 SDMY 531
D Y
Sbjct: 469 LDQY 472
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.9 bits (157), Expect = 7e-11
Identities = 69/570 (12%), Positives = 149/570 (26%), Gaps = 167/570 (29%)
Query: 32 HFNHL--------LSCQATCGIPEVAFATFENMEYGEDYMKP--DTETYNCVIQAYTRAE 81
H +H+ + + E AF + + +D K E + +I +
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS 62
Query: 82 SYDRVQDV-----AELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNY 136
R+ E++ VE+ L+ N Y L+ + + Y
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEE--VLRIN---YKFLMSPIKTEQRQPSMMT-----RMY 112
Query: 137 EGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRT 196
L+N+ ++ R ++L +AL + + + V ++ S K
Sbjct: 113 IEQRDRLYNDNQVFAKYNV-----SRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGK-TW 165
Query: 197 LVSS----------------WI------------EPLQE-----EAELGYEIDYIARYIS 223
+ W+ E LQ+ + D+ +
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 224 EGGLTGERKR--WVPRRGKTPL-------DPDAVGFIYSNPMETSFKQRCLEDGKKYHRK 274
R + + L + A +F C K
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW---------NAFNLSC---------K 267
Query: 275 LLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKG-----------------PEQHVLK-- 315
+L T + + + + ++ ++ L P + VL
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE-VLTTN 326
Query: 316 PKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRI---------NRSRGRPL--- 363
P+ S ++ +++ L D ++V ++ R L
Sbjct: 327 PRRLS-IIAESIRDGLAT----WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381
Query: 364 ----WVPP-------VEEEEEEVDEEVDELISRIKLEEGNTEFWKR------RFLGEGLN 406
+P + + +V V++L +E+ E + N
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441
Query: 407 GR--HDKAVE-------MDESELSDVLDDDVTDVEYVAKD-----EEADEEEEVEQAEPE 452
H V+ D +L D Y + + E +
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQ-----YFYSHIGHHLKNIEHPERMTLFRMV 496
Query: 453 SQDVDRVKEKLVEAKKPLQMIG--VQLLKD 480
D +++K+ G + L+
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNTLQQ 526
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 4e-05
Identities = 58/427 (13%), Positives = 124/427 (29%), Gaps = 141/427 (33%)
Query: 270 KYH-RKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPE-QHVL------------- 314
+Y + +L + A + + D V++ K ++ E H++
Sbjct: 15 QYQYKDILSVFE---DAFVDNF---DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 315 -----KPKAASKMVV------------SELKEELDAQGLPTD---GTRNVLYQRVQKARR 354
K + + V S +K E + T R+ LY Q +
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 355 INRSRGRPLWVPPVEEEEEEVDEE----------------VDELISRIKLEE--GNTEFW 396
N SR +P + + E+ ++ K++ FW
Sbjct: 129 YNVSRLQPYLK--LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186
Query: 397 KRRFLGEGLNGRHDKAVEMDESELSDVLDDDVTDVEYVAKDEEADEEEEVEQAEPESQDV 456
L + +EM + L +D + T + + +
Sbjct: 187 ----LNLKNCNSPETVLEMLQK-LLYQIDPNWT--------------SRSDHSSNIKLRI 227
Query: 457 DRVKEKL------------------VEAKKPLQM--IGVQLL---KDSDQT-----TTTS 488
++ +L V+ K + ++L + T TT+
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 489 KRSMKRSSRMVEDDDDED----WFPEDPFEAFKEMRKRKVFDVSDMYTIADA---WGWTW 541
S+ S + D+ + + P + +E+ +S IA++ TW
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS---IIAESIRDGLATW 344
Query: 542 EREITNRPPQKWSQE--WEVELAIQIMLKVIELGGTPTIG-----DCAVIIRAAIRAPLP 594
+ W ++ I+ L V+E P + + + A +P
Sbjct: 345 DN---------WKHVNCDKLTTIIESSLNVLE----PAEYRKMFDRLS-VFPPS--AHIP 388
Query: 595 SAFLKIL 601
+ L ++
Sbjct: 389 TILLSLI 395
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 7e-05
Identities = 45/313 (14%), Positives = 96/313 (30%), Gaps = 54/313 (17%)
Query: 368 VEEEEEEV--DEEVDELISRIKLEEGNTEFWKRRFLGEGLNGRHDKAVEMDESELSDVLD 425
V++ + + EE+D + + + R L K EM + + +VL
Sbjct: 38 VQDMPKSILSKEEIDHI-----IMSKDAVSGTLRLFWTLL----SKQEEMVQKFVEEVLR 88
Query: 426 DD----VTDVEYVAKDEEADEEEEVEQAEPESQDVDRVKEKLVEAKKPLQMIGVQLLKDS 481
+ ++ ++ + +EQ + D + V +P + LL+
Sbjct: 89 INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148
Query: 482 DQTTTT-------SKRSMKRSSRMVEDDDDEDWFPEDPFEAF-----KEMRKRKVFD-VS 528
K + + + + F+ F V + +
Sbjct: 149 PAKNVLIDGVLGSGKTWV--ALDVCLSYKVQCKM---DFKIFWLNLKNCNSPETVLEMLQ 203
Query: 529 DMYTIADAWGWTWEREITNRPPQKWSQEWEVELAIQIMLKVIELGGTPTIGDCAVIIRAA 588
+ D WT + ++ + + EL + K E +C +++
Sbjct: 204 KLLYQIDP-NWTSRSDHSSNIKLR-IHSIQAELRRLLKSKPYE--------NCLLVLLNV 253
Query: 589 IRAPLPSAFL---KIL------QKTHSLGYVFGSPLYDEIISLCLDLGELDAAVAIVADM 639
A +AF KIL Q T L + + + S+ L E+ + + D
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 640 ETTGIAVPDQTLD 652
+ P + L
Sbjct: 314 RPQDL--PREVLT 324
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 59.8 bits (143), Expect = 2e-09
Identities = 48/342 (14%), Positives = 94/342 (27%), Gaps = 40/342 (11%)
Query: 21 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM-EYGEDYMKPDTETYNCVIQAYTR 79
A C +A + + YN V+ + R
Sbjct: 118 HSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR 177
Query: 80 AESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGG 139
++ + +L M+ + L P++ +YA ++C + I
Sbjct: 178 QGAFKELV---YVLFMVKDA--GLTPDLLSYAAALQCMGRQDQDAGTIE----------- 221
Query: 140 TKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVS 199
+ L G L A+ + K +PP+ + L
Sbjct: 222 -RCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRD 280
Query: 200 SWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETS 259
+ + + + + + E L E V + +
Sbjct: 281 VYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRV-------------------CVVSV 321
Query: 260 FKQRCLEDGKKYHRKLLRTLQNEGPAVLGDV--SESDYVRVEERLKKLIKGPEQHVLKPK 317
K K+ RK L+TL+++ L + + E + P +L +
Sbjct: 322 EKPTLPSKEVKHARKTLKTLRDQWEKALCRALRETKNRLEREVYEGRFSLYPFLCLLDER 381
Query: 318 AASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSR 359
+M++ L+ L AQG L R + R R
Sbjct: 382 EVVRMLLQVLQ-ALPAQGESFTTLARELSARTFSRHVVQRQR 422
|
| >1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1 Length = 50 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 9e-06
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 320 SKMVVSELKEELDAQGLPTDGTRNVLYQRVQKA 352
++ V+EL+EEL +GL T G + L +R+Q A
Sbjct: 11 RRLKVNELREELQRRGLDTRGLKAELAERLQAA 43
|
| >2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A Length = 75 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 2e-05
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 316 PKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGRPLWVP 366
P M V+ELK+EL + LP GT+ L +R++ + P
Sbjct: 23 PANLDDMKVAELKQELKLRSLPVSGTKTELIERLRAYQDQISPVPGAPKAP 73
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 670 | |||
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.93 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.91 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.77 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.76 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.53 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.48 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.48 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.36 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.28 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.21 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.18 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.15 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.1 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.08 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.08 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.08 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.04 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.03 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.02 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.01 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 98.98 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 98.95 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 98.91 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 98.9 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 98.83 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 98.83 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 98.81 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 98.8 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 98.75 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 98.71 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 98.71 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 98.66 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 98.62 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 98.61 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.55 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 98.54 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 98.54 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 98.51 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 98.5 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.5 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 98.49 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 98.46 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 98.46 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 98.45 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 98.4 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.37 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 98.36 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.34 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 98.34 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.3 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.29 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.28 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.28 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 98.22 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 98.19 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 98.17 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 98.14 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 98.14 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 98.14 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.13 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 98.11 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 98.11 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 98.08 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.08 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 98.07 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 98.07 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 98.07 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 98.06 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.06 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 97.98 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 97.95 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 97.93 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 97.92 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 97.88 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 97.87 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 97.86 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 97.83 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 97.74 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 97.72 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 97.69 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 97.67 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 97.64 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 97.63 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 97.6 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 97.58 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 97.57 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 97.55 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 97.49 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 97.47 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 97.45 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 97.45 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 97.44 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 97.42 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 97.42 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 97.4 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 97.38 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 97.3 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 97.25 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 97.18 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 97.12 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 97.11 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 97.11 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 97.11 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 97.06 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 97.04 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 97.02 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 96.93 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 96.9 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 96.82 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 96.82 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 96.74 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 96.66 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 96.66 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 96.65 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 96.63 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 96.63 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 96.61 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 96.59 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 96.59 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 96.55 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 96.51 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 96.5 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 96.49 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 96.47 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 96.42 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 96.42 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 96.41 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 96.4 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 96.39 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 96.39 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 96.38 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 96.37 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 96.37 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 96.33 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 96.27 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 96.26 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 96.26 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 96.24 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 96.21 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 96.21 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 96.2 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 96.19 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 96.18 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 96.15 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 96.15 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 96.14 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 96.07 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 95.93 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 95.92 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 95.9 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 95.82 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 95.8 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 95.74 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 95.67 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 95.6 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 95.59 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 95.59 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 95.54 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 95.49 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 95.49 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 95.4 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 95.31 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 95.29 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 95.24 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 95.17 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 95.05 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 95.02 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 94.85 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 94.74 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 94.67 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 94.57 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 94.48 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 94.16 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 94.11 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 93.92 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 93.89 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 93.78 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 93.76 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 93.63 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 93.56 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 93.22 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 93.07 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 92.89 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 92.43 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 92.24 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 91.86 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 91.82 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 91.41 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 91.25 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 90.8 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 90.57 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 90.42 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 90.11 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 89.95 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 89.91 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 89.89 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 89.79 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 89.61 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 89.23 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 88.59 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 88.16 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 88.08 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 87.21 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 87.08 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 86.5 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 84.32 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 81.03 |
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-28 Score=277.84 Aligned_cols=181 Identities=15% Similarity=0.157 Sum_probs=170.0
Q ss_pred CHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---------hHHHHHHHHHchhCCCCCCCCHHHHH
Q 005912 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI---------PEVAFATFENMEYGEDYMKPDTETYN 71 (670)
Q Consensus 1 LI~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~---------~e~A~~lf~~M~~~~~gi~Pd~~tyn 71 (670)
+|++|++.|++++|+++|++|.+.|+.||.+|||+||++|++.+. ++.|.++|++|. ..|+.||.+|||
T Consensus 32 ~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~--~~G~~Pd~~tyn 109 (501)
T 4g26_A 32 KLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMI--VDKVVPNEATFT 109 (501)
T ss_dssp HHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHH--HTTCCCCHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHH--HhCCCCCHHHHH
Confidence 378999999999999999999999999999999999999998765 688999999999 899999999999
Q ss_pred HHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCch
Q 005912 72 CVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGD 151 (670)
Q Consensus 72 ~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pd 151 (670)
+||.+|++.| ++++|+++|++|.+ .|+.||..||++||.+|++.|++++|.++|++|.+.|+.|+..
T Consensus 110 ~lI~~~~~~g---~~~~A~~l~~~M~~--~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~-------- 176 (501)
T 4g26_A 110 NGARLAVAKD---DPEMAFDMVKQMKA--FGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEP-------- 176 (501)
T ss_dssp HHHHHHHHHT---CHHHHHHHHHHHHH--TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHH--------
T ss_pred HHHHHHHhcC---CHHHHHHHHHHHHH--cCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHH--------
Confidence 9999999999 89999999999999 9999999999999999999999999999999999988888877
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHH
Q 005912 152 PLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWI 202 (670)
Q Consensus 152 tyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~ 202 (670)
|||+||++|++.|++++|.++|++|++.|+ .|+..+ |+.++..+.
T Consensus 177 ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~--~ps~~T----~~~l~~~F~ 221 (501)
T 4g26_A 177 ELAALLKVSMDTKNADKVYKTLQRLRDLVR--QVSKST----FDMIEEWFK 221 (501)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTS--SBCHHH----HHHHHHHHH
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHhCC--CcCHHH----HHHHHHHHh
Confidence 999999999999999999999999999998 677664 777766553
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-28 Score=273.13 Aligned_cols=210 Identities=11% Similarity=0.077 Sum_probs=177.8
Q ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcc------
Q 005912 12 SNALEIAYEMEAAGRMATT-FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD------ 84 (670)
Q Consensus 12 ~~Al~lf~~M~~~Gv~Pd~-~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~------ 84 (670)
..+..+++.+++.++.++. ..++.+|++||+.|++++|.++|++|. ..|+.||.+|||+||.+|++.+...
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~--~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~ 84 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEAR--RNGVQLSQYHYNVLLYVCSLAEAATESSPNP 84 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHH--HHTCCCCHHHHHHHHHHHTTCCCCSSSSCCH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH--HcCCCCCHhHHHHHHHHHHhCCchhhhhhcc
Confidence 4566777889888887654 468999999999999999999999999 8999999999999999999877432
Q ss_pred cHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcC
Q 005912 85 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREG 164 (670)
Q Consensus 85 ~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G 164 (670)
.+++|+++|++|.. .|+.||.+||++||.+|++.|++++|.++|++|.+.|+.|++. |||+||.+||+.|
T Consensus 85 ~l~~A~~lf~~M~~--~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~--------tyn~lI~~~~~~g 154 (501)
T 4g26_A 85 GLSRGFDIFKQMIV--DKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLR--------SYGPALFGFCRKG 154 (501)
T ss_dssp HHHHHHHHHHHHHH--TTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH--------HHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc--------eehHHHHHHHHCC
Confidence 37899999999999 9999999999999999999999999999999999999888887 9999999999999
Q ss_pred CHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCCCC
Q 005912 165 RIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLD 244 (670)
Q Consensus 165 ~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi~ 244 (670)
++++|.++|++|.+.|+ .|+.. +|+.||.++ ++.|..++|..+|+.|.+.|+.
T Consensus 155 ~~~~A~~l~~~M~~~G~--~Pd~~----ty~~Li~~~---------------------~~~g~~d~A~~ll~~Mr~~g~~ 207 (501)
T 4g26_A 155 DADKAYEVDAHMVESEV--VPEEP----ELAALLKVS---------------------MDTKNADKVYKTLQRLRDLVRQ 207 (501)
T ss_dssp CHHHHHHHHHHHHHTTC--CCCHH----HHHHHHHHH---------------------HHTTCHHHHHHHHHHHHHHTSS
T ss_pred CHHHHHHHHHHHHhcCC--CCCHH----HHHHHHHHH---------------------hhCCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999998 78887 499999888 8889999999999999999999
Q ss_pred CCcccchhhhhHHHHHHHHHhc
Q 005912 245 PDAVGFIYSNPMETSFKQRCLE 266 (670)
Q Consensus 245 Pd~d~~ty~~LIe~lv~~~~~~ 266 (670)
|+. .||++++ ..|+..
T Consensus 208 ps~--~T~~~l~----~~F~s~ 223 (501)
T 4g26_A 208 VSK--STFDMIE----EWFKSE 223 (501)
T ss_dssp BCH--HHHHHHH----HHHHSH
T ss_pred cCH--HHHHHHH----HHHhcC
Confidence 999 8898777 666653
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-23 Score=237.84 Aligned_cols=446 Identities=8% Similarity=-0.065 Sum_probs=332.5
Q ss_pred CHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHc
Q 005912 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 80 (670)
Q Consensus 1 LI~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~ 80 (670)
++..|.+.|++++|+.+|++|.. ..|+..+++.+..+|.+.|++++|..+|+.+.. ..++..+|+.++.+|.+.
T Consensus 90 ~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~l~~~~~~~ 163 (597)
T 2xpi_A 90 WRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL----YNRSSACRYLAAFCLVKL 163 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG----GGTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc----cccchhHHHHHHHHHHHH
Confidence 36789999999999999999984 568999999999999999999999999999852 278999999999999999
Q ss_pred CCcccHHHHHHHHHHhHhccC--------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCccc-cc
Q 005912 81 ESYDRVQDVAELLGMMVEDHK--------------RLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVL-HN 145 (670)
Q Consensus 81 g~~~~~~eAl~lf~eM~~~~~--------------gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~-~~ 145 (670)
| +.++|+++|+++... . +..++..+|+.++.+|.+.|++++|.++|+.|.+........ ..
T Consensus 164 g---~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 239 (597)
T 2xpi_A 164 Y---DWQGALNLLGETNPF-RKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ 239 (597)
T ss_dssp T---CHHHHHHHHCSSCTT-C----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred h---hHHHHHHHHhccCCc-cccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence 9 899999999954321 2 334578999999999999999999999999998764321100 00
Q ss_pred ----CC--------------------CCch----HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHH
Q 005912 146 ----EG--------------------NFGD----PLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTL 197 (670)
Q Consensus 146 ----~g--------------------~~pd----tyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~l 197 (670)
+. ..+. +|+.++.+|++.|++++|..+|+.|.+. +++.. ++..+
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~----~~~~~----~~~~l 311 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL----EKSSD----LLLCK 311 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG----GGCHH----HHHHH
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC----CchHH----HHHHH
Confidence 00 0000 4566677888899999999999988654 23333 25555
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHH
Q 005912 198 VSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLR 277 (670)
Q Consensus 198 l~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~ 277 (670)
...+ .+.|..++|..+|+.+...+ |+ +..+|+.++ ..|.+.|+.++|..+|+
T Consensus 312 ~~~~---------------------~~~g~~~~A~~~~~~~~~~~--~~-~~~~~~~l~----~~~~~~g~~~~A~~~~~ 363 (597)
T 2xpi_A 312 ADTL---------------------FVRSRFIDVLAITTKILEID--PY-NLDVYPLHL----ASLHESGEKNKLYLISN 363 (597)
T ss_dssp HHHH---------------------HHTTCHHHHHHHHHHHHHHC--TT-CCTTHHHHH----HHHHHHTCHHHHHHHHH
T ss_pred HHHH---------------------HHhcCHHHHHHHHHHHHHcC--cc-cHHHHHHHH----HHHHHhCCHHHHHHHHH
Confidence 5444 77889999999999987643 32 235666665 78899999999999999
Q ss_pred HHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCChhh
Q 005912 278 TLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINR 357 (670)
Q Consensus 278 ~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~Gip~d~t~~~Ll~a~~~aG~~~e 357 (670)
.|..... .+...+..+...+.+ .|++++|..+|+++....-.+..+|+.+...+++.|++++
T Consensus 364 ~~~~~~~-----~~~~~~~~l~~~~~~-------------~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 425 (597)
T 2xpi_A 364 DLVDRHP-----EKAVTWLAVGIYYLC-------------VNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQ 425 (597)
T ss_dssp HHHHHCT-----TSHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhhCc-----ccHHHHHHHHHHHHH-------------hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 9985432 355666666666654 4669999999999987543344799999999999999998
Q ss_pred hhcCCCCCCCcchhhhhhhHHHHHHHHhcccCCCcHhHHHHhhhccCcCCCCCccccccccccccccCcCcchhhHhhhc
Q 005912 358 SRGRPLWVPPVEEEEEEVDEEVDELISRIKLEEGNTEFWKRRFLGEGLNGRHDKAVEMDESELSDVLDDDVTDVEYVAKD 437 (670)
Q Consensus 358 A~~~~~~~p~~e~~~~~vdeE~~~li~~~~~~~~~~~~w~~~llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (670)
|... +..++. ..+.+...|.. +...+
T Consensus 426 A~~~-----------------~~~~~~---~~~~~~~~~~~-l~~~~--------------------------------- 451 (597)
T 2xpi_A 426 AISA-----------------YTTAAR---LFQGTHLPYLF-LGMQH--------------------------------- 451 (597)
T ss_dssp HHHH-----------------HHHHHH---TTTTCSHHHHH-HHHHH---------------------------------
T ss_pred HHHH-----------------HHHHHH---hCccchHHHHH-HHHHH---------------------------------
Confidence 8743 222222 22233444432 11000
Q ss_pred hhhhHHHHHhhcCCCcchhhhHHHHHHhhcCchhhHHhhhcccccccchhhhcccccccCcccCCCCCCCCCCChHHHHH
Q 005912 438 EEADEEEEVEQAEPESQDVDRVKEKLVEAKKPLQMIGVQLLKDSDQTTTTSKRSMKRSSRMVEDDDDEDWFPEDPFEAFK 517 (670)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (670)
... + + +....+.|+
T Consensus 452 --------------------------------------~~~----------g----------------~--~~~A~~~~~ 465 (597)
T 2xpi_A 452 --------------------------------------MQL----------G----------------N--ILLANEYLQ 465 (597)
T ss_dssp --------------------------------------HHH----------T----------------C--HHHHHHHHH
T ss_pred --------------------------------------HHc----------C----------------C--HHHHHHHHH
Confidence 000 0 0 233455666
Q ss_pred HhhhccCCcchhhHHHHHHhcchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHc----CCccC--hhcHHHHHHHHHcC
Q 005912 518 EMRKRKVFDVSDMYTIADAWGWTWEREITNRPPQKWSQEWEVELAIQIMLKVIEL----GGTPT--IGDCAVIIRAAIRA 591 (670)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~ 591 (670)
.|.+....+...++.+++++. - ..+++.|++++++++++ |..|+ ...|..+..++.+.
T Consensus 466 ~~~~~~~~~~~~~~~l~~~~~--------------~--~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 529 (597)
T 2xpi_A 466 SSYALFQYDPLLLNELGVVAF--------------N--KSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529 (597)
T ss_dssp HHHHHCCCCHHHHHHHHHHHH--------------H--TTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT
T ss_pred HHHHhCCCChHHHHHHHHHHH--------------H--hCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh
Confidence 666666656666778888772 2 23345599999999988 88998 78999999999999
Q ss_pred CCcHHHHHHHHHhhhcCCccCcccHHHHHHHHhhhchhHHHHHHHHHHHHhCCCCCch
Q 005912 592 PLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGELDAAVAIVADMETTGIAVPDQ 649 (670)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (670)
+.++.+..+++++.+++ ......|..+..+|.+.|+|++|+..+..+-+. .|.+.
T Consensus 530 g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~ 584 (597)
T 2xpi_A 530 KMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI--SPNEI 584 (597)
T ss_dssp TCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCCh
Confidence 99999999999999886 336788999999999999999999999888764 34443
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.7e-22 Score=225.08 Aligned_cols=453 Identities=9% Similarity=-0.049 Sum_probs=316.6
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCccc
Q 005912 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 85 (670)
Q Consensus 6 ~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~ 85 (670)
.+.|.+..+...|..+. .+++..|+.++..|.+.|++++|..+|++|.. ..||..+|+.+..+|.+.| +
T Consensus 64 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~l~~~~~~~g---~ 132 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLD----ITGNPNDAFWLAQVYCCTG---D 132 (597)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHCCHHHHHHHHHHHHHTT---C
T ss_pred cccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHh----hCCCchHHHHHHHHHHHcC---c
Confidence 34455566666665554 35889999999999999999999999999972 4689999999999999999 8
Q ss_pred HHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCC----ccc-ccCCCCc--hHHHHHHH
Q 005912 86 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGT----KVL-HNEGNFG--DPLSLYLR 158 (670)
Q Consensus 86 ~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~----~v~-~~~g~~p--dtyn~LI~ 158 (670)
.++|+.+|..+.. ..++..+++.++.+|.+.|++++|.++|+++....... ... ...+..+ .+|+.++.
T Consensus 133 ~~~A~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 208 (597)
T 2xpi_A 133 YARAKCLLTKEDL----YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQ 208 (597)
T ss_dssp HHHHHHHHHHTCG----GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc----cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHH
Confidence 8999999999854 46899999999999999999999999998533211000 000 0001111 18999999
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHH----------H-H-HHHHHHcCCCHHHH-----HHH
Q 005912 159 ALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWI----------E-P-LQEEAELGYEIDYI-----ARY 221 (670)
Q Consensus 159 ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~----------~-l-l~~m~~~G~~pd~i-----~~~ 221 (670)
+|.+.|++++|..+|++|.+.+. ..++. +..+..... . + +..+...+..+... ...
T Consensus 209 ~~~~~g~~~~A~~~~~~~~~~~p-~~~~~------~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 281 (597)
T 2xpi_A 209 VYTNLSNFDRAKECYKEALMVDA-KCYEA------FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNK 281 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHH------HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-hhhHH------HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHH
Confidence 99999999999999999988653 12222 222211100 0 0 12222222222211 123
Q ss_pred HHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHH
Q 005912 222 ISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEER 301 (670)
Q Consensus 222 ~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~ 301 (670)
+.+.|..++|..+|+.+... .++. .+|+.++ .+|.+.|++++|+.+|+.|...+.. +...+..+...
T Consensus 282 ~~~~g~~~~A~~~~~~~~~~--~~~~--~~~~~l~----~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~ 348 (597)
T 2xpi_A 282 TSHEDELRRAEDYLSSINGL--EKSS--DLLLCKA----DTLFVRSRFIDVLAITTKILEIDPY-----NLDVYPLHLAS 348 (597)
T ss_dssp TTTHHHHHHHHHHHHTSTTG--GGCH--HHHHHHH----HHHHHTTCHHHHHHHHHHHHHHCTT-----CCTTHHHHHHH
T ss_pred HcCcchHHHHHHHHHHhhcC--CchH--HHHHHHH----HHHHHhcCHHHHHHHHHHHHHcCcc-----cHHHHHHHHHH
Confidence 55678899999999998765 2444 7787766 8899999999999999999876532 34455555555
Q ss_pred HHHccCCCcccccccccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCChhhhhcCCCCCCCcchhhhhhhHHHHH
Q 005912 302 LKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDE 381 (670)
Q Consensus 302 l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~Gip~d~t~~~Ll~a~~~aG~~~eA~~~~~~~p~~e~~~~~vdeE~~~ 381 (670)
+.+ .|..++|..++++|....-.+..+++.+...|.+.|++++|... +..
T Consensus 349 ~~~-------------~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-----------------~~~ 398 (597)
T 2xpi_A 349 LHE-------------SGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRY-----------------FSK 398 (597)
T ss_dssp HHH-------------HTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHH-----------------HHH
T ss_pred HHH-------------hCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHH-----------------HHH
Confidence 554 45699999999999865433448999999999999999998743 222
Q ss_pred HHHhcccCCCcHhHHHHhhhccCcCCCCCccccccccccccccCcCcchhhHhhhchhhhHHHHHhhcCCCcchhhhHHH
Q 005912 382 LISRIKLEEGNTEFWKRRFLGEGLNGRHDKAVEMDESELSDVLDDDVTDVEYVAKDEEADEEEEVEQAEPESQDVDRVKE 461 (670)
Q Consensus 382 li~~~~~~~~~~~~w~~~llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (670)
.+. ..+.+...|......-+..
T Consensus 399 ~~~---~~~~~~~~~~~l~~~~~~~------------------------------------------------------- 420 (597)
T 2xpi_A 399 SST---MDPQFGPAWIGFAHSFAIE------------------------------------------------------- 420 (597)
T ss_dssp HHH---HCTTCHHHHHHHHHHHHHH-------------------------------------------------------
T ss_pred HHH---hCCCCHHHHHHHHHHHHHc-------------------------------------------------------
Confidence 222 2334455555310000000
Q ss_pred HHHhhcCchhhHHhhhcccccccchhhhcccccccCcccCCCCCCCCCCChHHHHHHhhhccCCcchhhHHHHHHhcchh
Q 005912 462 KLVEAKKPLQMIGVQLLKDSDQTTTTSKRSMKRSSRMVEDDDDEDWFPEDPFEAFKEMRKRKVFDVSDMYTIADAWGWTW 541 (670)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (670)
+ + +....+.|+.|.+....+...++.++.++.
T Consensus 421 ---------------------------g----------------~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~--- 452 (597)
T 2xpi_A 421 ---------------------------G----------------E--HDQAISAYTTAARLFQGTHLPYLFLGMQHM--- 452 (597)
T ss_dssp ---------------------------T----------------C--HHHHHHHHHHHHHTTTTCSHHHHHHHHHHH---
T ss_pred ---------------------------C----------------C--HHHHHHHHHHHHHhCccchHHHHHHHHHHH---
Confidence 0 0 234455666666666656667788888772
Q ss_pred hhhhccCCCCCchhHHHHHHHHHHHHHHHHcCCccChhcHHHHHHHHHcCCCcHHHHHHHHHhhhc----CCccC--ccc
Q 005912 542 EREITNRPPQKWSQEWEVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSL----GYVFG--SPL 615 (670)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~ 615 (670)
+...++.|++++++++++.-. +...|..+..+..+.+.++.++.+++++.+. |..|. ...
T Consensus 453 -------------~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~ 518 (597)
T 2xpi_A 453 -------------QLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT 518 (597)
T ss_dssp -------------HHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHH
T ss_pred -------------HcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHH
Confidence 233456699999999988543 6788999999999999999999999999888 88888 679
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHhC
Q 005912 616 YDEIISLCLDLGELDAAVAIVADMETTG 643 (670)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (670)
|..+..+|...|++++|+.++..+.+.+
T Consensus 519 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 519 WANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999998876
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-19 Score=212.59 Aligned_cols=162 Identities=12% Similarity=0.084 Sum_probs=129.1
Q ss_pred CHHHHHhcCChHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHH
Q 005912 1 MIAEDCKAGDHSNALEIAYEMEA---AGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAY 77 (670)
Q Consensus 1 LI~~y~k~G~~~~Al~lf~~M~~---~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay 77 (670)
||++||+.|++++|.++|.+|.+ .|+.||++|||+||++||+.|++++|.++|++|. ..|+.||++|||+||+||
T Consensus 133 LIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~--~~G~~PDvvTYntLI~gl 210 (1134)
T 3spa_A 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK--DAGLTPDLLSYAAALQCM 210 (1134)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH--HTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHH--HcCCCCcHHHHHHHHHHH
Confidence 58999999999999999988874 5899999999999999999999999999999999 899999999999999999
Q ss_pred HHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHH
Q 005912 78 TRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYL 157 (670)
Q Consensus 78 ~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI 157 (670)
|+.|. ..++|.++|++|.+ .|+.||.+||+++|.++.+.+-++.+.+++..+.-...++... .+.+.|.
T Consensus 211 cK~G~--~~e~A~~Ll~EM~~--kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~-------~t~~LL~ 279 (1134)
T 3spa_A 211 GRQDQ--DAGTIERCLEQMSQ--EGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPV-------NTSKLLR 279 (1134)
T ss_dssp HHHTC--CHHHHHHHHHHHHH--HTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCC-------CCCTTTH
T ss_pred HhCCC--cHHHHHHHHHHHHH--cCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccc-------cchHHHH
Confidence 99993 25789999999999 9999999999999988877655544444322111100000111 1666788
Q ss_pred HHHHHcCC---------HHHHHHHHHH
Q 005912 158 RALCREGR---------IIELLEALEA 175 (670)
Q Consensus 158 ~ay~k~G~---------~eeA~~vf~~ 175 (670)
+.|.+.+. .++-..+|++
T Consensus 280 dl~s~d~~~s~pk~~~~~~~L~~~~~~ 306 (1134)
T 3spa_A 280 DVYAKDGRVSYPKLHLPLKTLQCLFEK 306 (1134)
T ss_dssp HHHCCCSCCCCCCCSSCHHHHHHHHHH
T ss_pred HHHccCCCCcCccccCCHHHHHHHHHH
Confidence 88887762 4666666663
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.6e-19 Score=205.47 Aligned_cols=133 Identities=13% Similarity=0.147 Sum_probs=119.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchh-CCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCH
Q 005912 29 TTFHFNHLLSCQATCGIPEVAFATFENMEY-GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV 107 (670)
Q Consensus 29 d~~tyn~LI~~yak~G~~e~A~~lf~~M~~-~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~ 107 (670)
-..|||+||++||++|++++|..+|++|.. +..|+.||++|||+||+|||+.| ++++|+++|++|.+ .|+.||.
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G---~~~eA~~Lf~eM~~--~G~~PDv 200 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQG---AFKELVYVLFMVKD--AGLTPDL 200 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHH--TTCCCCH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCC---CHHHHHHHHHHHHH--cCCCCcH
Confidence 457999999999999999999999988762 13589999999999999999999 89999999999999 9999999
Q ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHH
Q 005912 108 KTYALLVECFTKYCA-VTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALE 174 (670)
Q Consensus 108 ~Ty~~LL~a~ak~g~-~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~ 174 (670)
+|||+||.+||+.|+ .+.|.++|++|.+.|+.|+.+ +||++|+++.+.+-++.+.+++.
T Consensus 201 vTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~v--------tY~~ll~~~eR~~vL~~Vrkv~P 260 (1134)
T 3spa_A 201 LSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQAL--------FTAVLLSEEDRATVLKAVHKVKP 260 (1134)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHH--------HHHSCCCHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChh--------hcccccChhhHHHHHHHHHHhCc
Confidence 999999999999998 578999999999999988888 99999999888866655555533
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.6e-11 Score=132.67 Aligned_cols=290 Identities=10% Similarity=-0.024 Sum_probs=217.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcC
Q 005912 2 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 81 (670)
Q Consensus 2 I~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g 81 (670)
...|.+.|++++|+.+|+++... ...+..+|+.+..+|.+.|++++|...|+++.. .+ ..+..+|+.+...|.+.|
T Consensus 33 ~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~-p~~~~~~~~l~~~~~~~g 108 (450)
T 2y4t_A 33 GKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ--LK-MDFTAARLQRGHLLLKQG 108 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cC-CCcHHHHHHHHHHHHHcC
Confidence 35688999999999999999875 345789999999999999999999999999873 21 345889999999999999
Q ss_pred CcccHHHHHHHHHHhHhccCCCCCCH----HHHHHHH------------HHHHHcCCHHHHHHHHHHHHHccCCCccccc
Q 005912 82 SYDRVQDVAELLGMMVEDHKRLQPNV----KTYALLV------------ECFTKYCAVTEAIRHFRALQNYEGGTKVLHN 145 (670)
Q Consensus 82 ~~~~~~eAl~lf~eM~~~~~gi~Pd~----~Ty~~LL------------~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~ 145 (670)
+.++|+..|.++.. +.|+. .++..+. ..|.+.|++++|..+|..+...... .
T Consensus 109 ---~~~~A~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~---- 176 (450)
T 2y4t_A 109 ---KLDEAEDDFKKVLK----SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-D---- 176 (450)
T ss_dssp ---CHHHHHHHHHHHHT----SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-C----
T ss_pred ---CHHHHHHHHHHHHh----cCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C----
Confidence 88999999999976 45654 4555554 3488999999999999999875321 1
Q ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcC
Q 005912 146 EGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEG 225 (670)
Q Consensus 146 ~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~ 225 (670)
+.+++.+..+|.+.|++++|..+|+.+.+.+. .+.. ++..+... +...
T Consensus 177 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~----~~~~l~~~---------------------~~~~ 224 (450)
T 2y4t_A 177 ----AELRELRAECFIKEGEPRKAISDLKAASKLKN---DNTE----AFYKISTL---------------------YYQL 224 (450)
T ss_dssp ----HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC---SCHH----HHHHHHHH---------------------HHHT
T ss_pred ----hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CCHH----HHHHHHHH---------------------HHHc
Confidence 22799999999999999999999999887642 2221 24444333 3667
Q ss_pred CcHHHHHHHHHHhccCCCCCCcccchhhhhH---------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHH---
Q 005912 226 GLTGERKRWVPRRGKTPLDPDAVGFIYSNPM---------ETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSES--- 293 (670)
Q Consensus 226 g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LI---------e~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~--- 293 (670)
|..++|..+|+.+... .|+. ......+ ..+...|.+.|++++|..+|..+....-. +..
T Consensus 225 g~~~~A~~~~~~~~~~--~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~ 295 (450)
T 2y4t_A 225 GDHELSLSEVRECLKL--DQDH--KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-----IAEYTV 295 (450)
T ss_dssp TCHHHHHHHHHHHHHH--CTTC--HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-----SHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCh--HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-----chHHHH
Confidence 8999999999988643 3543 2221111 11257889999999999999999874321 211
Q ss_pred -HHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCChhhhhcC
Q 005912 294 -DYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGR 361 (670)
Q Consensus 294 -~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~Gip~d~t~~~Ll~a~~~aG~~~eA~~~ 361 (670)
.+..+-..+ ...|.+++|..+++++....-....+|..+..+|...|++++|...
T Consensus 296 ~~~~~l~~~~-------------~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 351 (450)
T 2y4t_A 296 RSKERICHCF-------------SKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQD 351 (450)
T ss_dssp HHHHHHHHHH-------------HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHH-------------HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 222222222 2567899999999998876433447899999999999999998743
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=4.6e-11 Score=127.20 Aligned_cols=305 Identities=11% Similarity=0.040 Sum_probs=225.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC-HHHHHHHHHHHHHcC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD-TETYNCVIQAYTRAE 81 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd-~~tyn~LI~ay~k~g 81 (670)
..+.+.|++++|..+++..... .+.+..+|+.+...|.+.|++++|...|+++.. +.|+ ..+|+.+..+|.+.|
T Consensus 41 ~~~~~~~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~g 115 (388)
T 1w3b_A 41 SIHFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALR----LKPDFIDGYINLAAALVAAG 115 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH----cCcchHHHHHHHHHHHHHcC
Confidence 4567889999999999887764 456788999999999999999999999999873 2454 568999999999999
Q ss_pred CcccHHHHHHHHHHhHhccCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHH
Q 005912 82 SYDRVQDVAELLGMMVEDHKRLQPNV-KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRAL 160 (670)
Q Consensus 82 ~~~~~~eAl~lf~eM~~~~~gi~Pd~-~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay 160 (670)
+.++|+..|.++.+ +.|+. .++..+-..|...|++++|.++|..+.+..+.. . .+|+.+...|
T Consensus 116 ---~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~--------~~~~~l~~~~ 179 (388)
T 1w3b_A 116 ---DMEGAVQAYVSALQ----YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF-A--------VAWSNLGCVF 179 (388)
T ss_dssp ---CSSHHHHHHHHHHH----HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTC-H--------HHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-H--------HHHHHHHHHH
Confidence 67799999999987 34654 556777788888999999999999998753221 1 2899999999
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHH---------HHHHHHHHHHcCC-CHH---HHHHHHHcCCc
Q 005912 161 CREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSS---------WIEPLQEEAELGY-EID---YIARYISEGGL 227 (670)
Q Consensus 161 ~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a---------~~~ll~~m~~~G~-~pd---~i~~~~~~~g~ 227 (670)
.+.|++++|...|+++.+.+ |+... .+..+... +...+.......- .+. .+...+...|.
T Consensus 180 ~~~g~~~~A~~~~~~al~~~----p~~~~---~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 252 (388)
T 1w3b_A 180 NAQGEIWLAIHHFEKAVTLD----PNFLD---AYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGL 252 (388)
T ss_dssp HTTTCHHHHHHHHHHHHHHC----TTCHH---HHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHhcC----CCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCC
Confidence 99999999999999998864 33221 23333222 2233333333221 122 23355677889
Q ss_pred HHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccC
Q 005912 228 TGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIK 307 (670)
Q Consensus 228 ~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~ 307 (670)
.++|...|+.+... .|+. ..+|+.+. ..|.+.|++++|..+|+.+....- .+...+..+...+.
T Consensus 253 ~~~A~~~~~~al~~--~p~~-~~~~~~l~----~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~---- 316 (388)
T 1w3b_A 253 IDLAIDTYRRAIEL--QPHF-PDAYCNLA----NALKEKGSVAEAEDCYNTALRLCP-----THADSLNNLANIKR---- 316 (388)
T ss_dssp HHHHHHHHHHHHHT--CSSC-HHHHHHHH----HHHHHHSCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHhh--CCCC-HHHHHHHH----HHHHHcCCHHHHHHHHHHHHhhCc-----ccHHHHHHHHHHHH----
Confidence 99999999988764 2432 13454444 788999999999999999987632 24455554444443
Q ss_pred CCcccccccccCCHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHhCChhhhhcC
Q 005912 308 GPEQHVLKPKAASKMVVSELKEELDAQGLPT-DGTRNVLYQRVQKARRINRSRGR 361 (670)
Q Consensus 308 ~p~~~~L~~~~g~~~~A~~l~~~M~~~Gip~-d~t~~~Ll~a~~~aG~~~eA~~~ 361 (670)
..|++++|..+++++.+.. |+ ..++..+...+.+.|++++|...
T Consensus 317 ---------~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (388)
T 1w3b_A 317 ---------EQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMH 361 (388)
T ss_dssp ---------TTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred ---------HcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4567999999999998753 44 37889999999999999988743
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=7.5e-11 Score=125.52 Aligned_cols=307 Identities=14% Similarity=0.070 Sum_probs=227.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
..+.+.|++++|+.+|..+.... +.+...+..+-..|.+.|++++|..+++.... ....+..+|+.+...|.+.|
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~---~~p~~~~~~~~lg~~~~~~g- 81 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK---QNPLLAEAYSNLGNVYKERG- 81 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHT-
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHCC-
Confidence 45778999999999999887642 33456667777888999999999999988773 22457889999999999999
Q ss_pred cccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQPN-VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALC 161 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~Pd-~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~ 161 (670)
+.++|+..|.++.. +.|+ ..+|..+..+|.+.|++++|.+.|..+.+..+. . +..++.+-..|.
T Consensus 82 --~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~-------~~~~~~l~~~~~ 146 (388)
T 1w3b_A 82 --QLQEAIEHYRHALR----LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD--L-------YCVRSDLGNLLK 146 (388)
T ss_dssp --CHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT--C-------THHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHH----cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--c-------HHHHHHHHHHHH
Confidence 89999999999987 3465 567999999999999999999999999875322 1 116788888999
Q ss_pred HcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHH---------HHHHHHHHHHHHcCCC-HHH---HHHHHHcCCcH
Q 005912 162 REGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLV---------SSWIEPLQEEAELGYE-IDY---IARYISEGGLT 228 (670)
Q Consensus 162 k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll---------~a~~~ll~~m~~~G~~-pd~---i~~~~~~~g~~ 228 (670)
+.|++++|..+|+.+.+.. |+... +|..+. ..+...+..+....-. ++. +...+...|..
T Consensus 147 ~~g~~~~A~~~~~~al~~~----p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 219 (388)
T 1w3b_A 147 ALGRLEEAKACYLKAIETQ----PNFAV---AWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIF 219 (388)
T ss_dssp TTSCHHHHHHHHHHHHHHC----TTCHH---HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCT
T ss_pred HccCHHHHHHHHHHHHHhC----CCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Confidence 9999999999999998764 32221 233332 3344556655554322 222 22456677888
Q ss_pred HHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCC
Q 005912 229 GERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKG 308 (670)
Q Consensus 229 ~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~ 308 (670)
++|...|+..... .|+. ..++..+. ..|.+.|++++|+..|+.+....-. +...+..+-..+.
T Consensus 220 ~~A~~~~~~al~~--~p~~-~~~~~~l~----~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~----- 282 (388)
T 1w3b_A 220 DRAVAAYLRALSL--SPNH-AVVHGNLA----CVYYEQGLIDLAIDTYRRAIELQPH-----FPDAYCNLANALK----- 282 (388)
T ss_dssp THHHHHHHHHHHH--CTTC-HHHHHHHH----HHHHHTTCHHHHHHHHHHHHHTCSS-----CHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHhh--CcCC-HHHHHHHH----HHHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHH-----
Confidence 8898888877543 2442 24454444 7889999999999999999876432 3444555444444
Q ss_pred CcccccccccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCChhhhhcC
Q 005912 309 PEQHVLKPKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGR 361 (670)
Q Consensus 309 p~~~~L~~~~g~~~~A~~l~~~M~~~Gip~d~t~~~Ll~a~~~aG~~~eA~~~ 361 (670)
..|++++|..+|+++.+..-.+..+++.+...+...|++++|...
T Consensus 283 --------~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 327 (388)
T 1w3b_A 283 --------EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRL 327 (388)
T ss_dssp --------HHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred --------HcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 456699999999999876533447899999999999999988643
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.36 E-value=5.5e-10 Score=120.56 Aligned_cols=285 Identities=12% Similarity=-0.001 Sum_probs=206.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCH----HHHHHHHHH-
Q 005912 2 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT----ETYNCVIQA- 76 (670)
Q Consensus 2 I~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~----~tyn~LI~a- 76 (670)
..+|.+.|++++|+..|+++.+.+ ..+..+|+.+...|.+.|++++|..+|+++.. ..|+. .+|+.++..
T Consensus 67 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~~l~~~~ 141 (450)
T 2y4t_A 67 ATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK----SNPSENEEKEAQSQLIKSD 141 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCChhhHHHHHHHHHHH
Confidence 357889999999999999998764 34688999999999999999999999999982 24543 677777555
Q ss_pred -----------HHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCccccc
Q 005912 77 -----------YTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHN 145 (670)
Q Consensus 77 -----------y~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~ 145 (670)
|.+.| +.++|+.+|.++.. . ...+..++..+..+|.+.|++++|.++|..+.+.....
T Consensus 142 ~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~--~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----- 210 (450)
T 2y4t_A 142 EMQRLRSQALNAFGSG---DYTAAIAFLDKILE--V-CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDN----- 210 (450)
T ss_dssp HHHHHHHHHHHHHHHT---CHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC-----
T ss_pred HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH--h-CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----
Confidence 88889 78999999999987 2 23467889999999999999999999999998753221
Q ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcC
Q 005912 146 EGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEG 225 (670)
Q Consensus 146 ~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~ 225 (670)
+.+|+.+...|.+.|++++|...|+.+.+.. |+... .+.. +..+... ... ......+.+.
T Consensus 211 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----p~~~~---~~~~-~~~~~~~-~~~-------~~~~~~~~~~ 270 (450)
T 2y4t_A 211 ----TEAFYKISTLYYQLGDHELSLSEVRECLKLD----QDHKR---CFAH-YKQVKKL-NKL-------IESAEELIRD 270 (450)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHH---HHHH-HHHHHHH-HHH-------HHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CChHH---HHHH-HHHHHHH-HHH-------HHHHHHHHHc
Confidence 2289999999999999999999999998654 33221 1111 1111000 000 0123446677
Q ss_pred CcHHHHHHHHHHhccCCCCCCccc---chhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHH
Q 005912 226 GLTGERKRWVPRRGKTPLDPDAVG---FIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERL 302 (670)
Q Consensus 226 g~~~~a~~lf~~m~~~gi~Pd~d~---~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l 302 (670)
|..++|..+|+.+... .|+... ..|. .+...+.+.|+.++|+.+++.+....- .+...+..+-..+
T Consensus 271 g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~a~~~~p-----~~~~~~~~l~~~~ 339 (450)
T 2y4t_A 271 GRYTDATSKYESVMKT--EPSIAEYTVRSKE----RICHCFSKDEKPVEAIRVCSEVLQMEP-----DNVNALKDRAEAY 339 (450)
T ss_dssp TCHHHHHHHHHHHHHH--CCSSHHHHHHHHH----HHHHHHHTTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc--CCcchHHHHHHHH----HHHHHHHHCCCHHHHHHHHHHHHHhCc-----ccHHHHHHHHHHH
Confidence 8999999999998763 344211 1333 345889999999999999999876532 2444555554555
Q ss_pred HHccCCCcccccccccCCHHHHHHHHHHHHhCCCCCH-HHHHHHHH
Q 005912 303 KKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTD-GTRNVLYQ 347 (670)
Q Consensus 303 ~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~Gip~d-~t~~~Ll~ 347 (670)
. ..|++++|...+++..+.. |.+ ..+..+-.
T Consensus 340 ~-------------~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 371 (450)
T 2y4t_A 340 L-------------IEEMYDEAIQDYETAQEHN-ENDQQIREGLEK 371 (450)
T ss_dssp H-------------HTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHH
T ss_pred H-------------HhcCHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 4 4566999999999998843 544 45554443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.4e-08 Score=103.16 Aligned_cols=294 Identities=11% Similarity=-0.012 Sum_probs=211.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
..|.+.|++++|+.+|++..... +.+..+|..+-..|...|++++|...|++... . ..-+...|..+-..|.+.|
T Consensus 11 ~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~~~~l~~~~~~~~- 85 (359)
T 3ieg_A 11 KKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIA--L-KMDFTAARLQRGHLLLKQG- 85 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHHT-
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--h-CCCcchHHHHHHHHHHHcC-
Confidence 46788999999999999988752 34688999999999999999999999999873 1 1236789999999999999
Q ss_pred cccHHHHHHHHHHhHhccCCCCC---C-HHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHccCCCcccccC
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQP---N-VKTYALL------------VECFTKYCAVTEAIRHFRALQNYEGGTKVLHNE 146 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~P---d-~~Ty~~L------------L~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~ 146 (670)
+.++|+..|.+... +.| + ...+..+ ...+...|++++|..+|..+.+....
T Consensus 86 --~~~~A~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------- 152 (359)
T 3ieg_A 86 --KLDEAEDDFKKVLK----SNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW------- 152 (359)
T ss_dssp --CHHHHHHHHHHHHT----SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------
T ss_pred --ChHHHHHHHHHHHh----cCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------
Confidence 88999999999976 456 3 3444444 47888999999999999999875322
Q ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCC
Q 005912 147 GNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGG 226 (670)
Q Consensus 147 g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g 226 (670)
.+.++..+...|.+.|++++|...|+...+.. |+... .+..+... +...|
T Consensus 153 --~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~---~~~~la~~---------------------~~~~~ 202 (359)
T 3ieg_A 153 --DAELRELRAECFIKEGEPRKAISDLKAASKLK----SDNTE---AFYKISTL---------------------YYQLG 202 (359)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----SCCHH---HHHHHHHH---------------------HHHHT
T ss_pred --chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHH---HHHHHHHH---------------------HHHcC
Confidence 12278999999999999999999999998764 22211 23333322 24557
Q ss_pred cHHHHHHHHHHhccCCCCCCcccchhhhhH--------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHH
Q 005912 227 LTGERKRWVPRRGKTPLDPDAVGFIYSNPM--------ETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRV 298 (670)
Q Consensus 227 ~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LI--------e~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~ 298 (670)
..++|...|+..... .|+.. .++..+. -.....+.+.|+.++|..+|.......-. +......+
T Consensus 203 ~~~~A~~~~~~a~~~--~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~ 274 (359)
T 3ieg_A 203 DHELSLSEVRECLKL--DQDHK-RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-----VAEYTVRS 274 (359)
T ss_dssp CHHHHHHHHHHHHHH--CTTCH-HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-----SHHHHHHH
T ss_pred CHHHHHHHHHHHHhh--Cccch-HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----chHHHHHH
Confidence 888898888887653 23321 1121110 01246688999999999999998875422 22222222
Q ss_pred HHHHHHccCCCcccccccccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCChhhhhcC
Q 005912 299 EERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGR 361 (670)
Q Consensus 299 l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~Gip~d~t~~~Ll~a~~~aG~~~eA~~~ 361 (670)
...+... ....|..++|..+++......-.+..++..+-..+...|++++|...
T Consensus 275 ~~~la~~---------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 328 (359)
T 3ieg_A 275 KERICHC---------FSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQD 328 (359)
T ss_dssp HHHHHHH---------HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHH---------HHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 1111111 02567799999999999876433447888899999999999998754
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.21 E-value=7.3e-09 Score=113.25 Aligned_cols=340 Identities=8% Similarity=-0.046 Sum_probs=195.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
..|.+.|++++|+..|+++.... |+..+|..+..+|.+.|++++|...|+++.. .. ..+..+|..+..+|.+.|
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~-p~~~~~~~~l~~~~~~~g- 87 (514)
T 2gw1_A 14 NQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALE--LK-PDYSKVLLRRASANEGLG- 87 (514)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HC-SCCHHHHHHHHHHHHHTT-
T ss_pred HHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhc--cC-hHHHHHHHHHHHHHHHHh-
Confidence 35788999999999999999865 8999999999999999999999999999873 21 345678999999999999
Q ss_pred cccHHHHHHHHHHhHhccCCCC----------------------------------------------------------
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQ---------------------------------------------------------- 104 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~---------------------------------------------------------- 104 (670)
+.++|+..|.++.. .+-.
T Consensus 88 --~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 88 --KFADAMFDLSVLSL--NGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp --CHHHHHHHHHHHHH--SSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred --hHHHHHHHHHHHHh--cCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 78899999988866 2210
Q ss_pred -------------------CC-HHHHHHHHHHHH---HcCCHHHHHHHHHHHHH-----ccCCCcccccCCCCchHHHHH
Q 005912 105 -------------------PN-VKTYALLVECFT---KYCAVTEAIRHFRALQN-----YEGGTKVLHNEGNFGDPLSLY 156 (670)
Q Consensus 105 -------------------Pd-~~Ty~~LL~a~a---k~g~~d~A~~lf~~M~~-----~g~~~~v~~~~g~~pdtyn~L 156 (670)
|+ ...+..+..++. +.|++++|..+|..+.+ ....|.-.......+.+|..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 11 222222222223 27888888888888776 211111000000001167777
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHH-HHhHHH--HHHHHHHHHHHHHHHcCC-CHHH---HHHHHHcCCcHH
Q 005912 157 LRALCREGRIIELLEALEAMAKDNQPVPPRAMI-LSRKYR--TLVSSWIEPLQEEAELGY-EIDY---IARYISEGGLTG 229 (670)
Q Consensus 157 I~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i-~~~ty~--~ll~a~~~ll~~m~~~G~-~pd~---i~~~~~~~g~~~ 229 (670)
...|.+.|++++|..+|+.+.+.+. .+.... .+..|. +-...+...+.......- .+.. +...+...|..+
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence 7778888888888888887766542 111110 011110 001122233333332211 1221 223345555666
Q ss_pred HHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-c-----cC--CCCHHHHHHHHHH
Q 005912 230 ERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPA-V-----LG--DVSESDYVRVEER 301 (670)
Q Consensus 230 ~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~-~-----~g--~~~~~~~~~~l~~ 301 (670)
+|...|+...... |+. ..++.. +...|.+.|+.++|+.+|..+....-. + .+ +...+.+..++..
T Consensus 322 ~A~~~~~~~~~~~--~~~-~~~~~~----l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 322 QAGKDFDKAKELD--PEN-IFPYIQ----LACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp HHHHHHHHHHHTC--SSC-SHHHHH----HHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhC--hhh-HHHHHH----HHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 6666666654421 221 122322 225556666666666666666543211 0 00 0000111122222
Q ss_pred HHHccCC-C----------cccccc---cc---cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCChhhhhcC
Q 005912 302 LKKLIKG-P----------EQHVLK---PK---AASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGR 361 (670)
Q Consensus 302 l~k~~~~-p----------~~~~L~---~~---~g~~~~A~~l~~~M~~~Gip~d~t~~~Ll~a~~~aG~~~eA~~~ 361 (670)
+.+.... | .+..+. .. .|.+++|...++......-....++..+...+...|++++|...
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 471 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITL 471 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 2221110 1 001111 25 78899999999999876533447888899999999999998743
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.18 E-value=6.1e-08 Score=105.84 Aligned_cols=98 Identities=11% Similarity=0.012 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHH
Q 005912 31 FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 110 (670)
Q Consensus 31 ~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty 110 (670)
..|-.+-..|.+.|++++|...|+++.. . .||..+|..+..+|.+.| +.++|+..|.++.+ .. ..+..+|
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~--~--~p~~~~~~~la~~~~~~g---~~~~A~~~~~~al~--~~-p~~~~~~ 76 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALE--L--KEDPVFYSNLSACYVSVG---DLKKVVEMSTKALE--LK-PDYSKVL 76 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHH--H--CCCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHH--HC-SCCHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHh--c--CccHHHHHhHHHHHHHHh---hHHHHHHHHHHHhc--cC-hHHHHHH
Confidence 4556667788999999999999999984 2 489999999999999999 88999999999987 22 2356789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHccC
Q 005912 111 ALLVECFTKYCAVTEAIRHFRALQNYEG 138 (670)
Q Consensus 111 ~~LL~a~ak~g~~d~A~~lf~~M~~~g~ 138 (670)
..+..+|.+.|++++|...|..+.....
T Consensus 77 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 104 (514)
T 2gw1_A 77 LRRASANEGLGKFADAMFDLSVLSLNGD 104 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999887653
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=4.8e-08 Score=99.92 Aligned_cols=284 Identities=7% Similarity=-0.080 Sum_probs=195.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
..+...|++++|+.+|+++.... ..+...+..+...+.+.|++++|..+|+++.. . -..+...|..+-..|...|+
T Consensus 30 ~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~~~~l~~~~~~~~~ 105 (330)
T 3hym_B 30 ERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVD--L-YPSNPVSWFAVGCYYLMVGH 105 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHH--H-CTTSTHHHHHHHHHHHHSCS
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHH--h-CcCCHHHHHHHHHHHHHhhh
Confidence 45677899999999999887653 23455666777888899999999999998873 1 12356788888888888883
Q ss_pred cccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCR 162 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k 162 (670)
+.++|...|.+... .. ..+..+|..+..+|...|++++|...|....+..... +.++..+...|.+
T Consensus 106 --~~~~A~~~~~~a~~--~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---------~~~~~~l~~~~~~ 171 (330)
T 3hym_B 106 --KNEHARRYLSKATT--LE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC---------HLPMLYIGLEYGL 171 (330)
T ss_dssp --CHHHHHHHHHHHHT--TC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC---------SHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHH--hC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcccc---------HHHHHHHHHHHHH
Confidence 36788899998876 22 2246778889999999999999999999888753221 1267778889999
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccC-
Q 005912 163 EGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKT- 241 (670)
Q Consensus 163 ~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~- 241 (670)
.|++++|...|+...+... .+.. .+..+... +...|..++|..+|+.....
T Consensus 172 ~~~~~~A~~~~~~al~~~~---~~~~----~~~~l~~~---------------------~~~~~~~~~A~~~~~~a~~~~ 223 (330)
T 3hym_B 172 TNNSKLAERFFSQALSIAP---EDPF----VMHEVGVV---------------------AFQNGEWKTAEKWFLDALEKI 223 (330)
T ss_dssp TTCHHHHHHHHHHHHTTCT---TCHH----HHHHHHHH---------------------HHHTTCHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHhCC---CChH----HHHHHHHH---------------------HHHcccHHHHHHHHHHHHHHh
Confidence 9999999999998877642 2211 23333322 35677889999888877532
Q ss_pred ---C--CCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCccccccc
Q 005912 242 ---P--LDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKP 316 (670)
Q Consensus 242 ---g--i~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~ 316 (670)
+ ..+.....+|.. +...|.+.|+.++|...|+......-. +...+..+-..+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~----la~~~~~~g~~~~A~~~~~~a~~~~~~-----~~~~~~~la~~~~------------- 281 (330)
T 3hym_B 224 KAIGNEVTVDKWEPLLNN----LGHVCRKLKKYAEALDYHRQALVLIPQ-----NASTYSAIGYIHS------------- 281 (330)
T ss_dssp TTTSCSCTTTTCCHHHHH----HHHHHHHTTCHHHHHHHHHHHHHHSTT-----CSHHHHHHHHHHH-------------
T ss_pred hhccccccccHHHHHHHH----HHHHHHHhcCHHHHHHHHHHHHhhCcc-----chHHHHHHHHHHH-------------
Confidence 1 111111134443 447889999999999999998876432 3333444333443
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCH-HHHHHHHHHH-HHhCCh
Q 005912 317 KAASKMVVSELKEELDAQGLPTD-GTRNVLYQRV-QKARRI 355 (670)
Q Consensus 317 ~~g~~~~A~~l~~~M~~~Gip~d-~t~~~Ll~a~-~~aG~~ 355 (670)
..|..++|...|++..+.. |.+ ..+..+...+ ...|+.
T Consensus 282 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 282 LMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred HhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCch
Confidence 4466999999999877644 444 5666666655 344443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.10 E-value=9e-09 Score=107.67 Aligned_cols=296 Identities=10% Similarity=-0.057 Sum_probs=197.3
Q ss_pred HHhcCChHHHHH-HHHHHHHcCC-CC--CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHc
Q 005912 5 DCKAGDHSNALE-IAYEMEAAGR-MA--TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 80 (670)
Q Consensus 5 y~k~G~~~~Al~-lf~~M~~~Gv-~P--d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~ 80 (670)
|...|++++|++ .|.+.....- .| +...+..+-..|.+.|++++|..+|+++.. . -..+..+|..+..+|.+.
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~-~p~~~~~~~~l~~~~~~~ 111 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQ--Q-DPKHMEAWQYLGTTQAEN 111 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHH--S-CTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH--h-CCCCHHHHHHHHHHHHHC
Confidence 445567777776 6664332210 11 345677888999999999999999999983 2 134778999999999999
Q ss_pred CCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCC------CCch-HH
Q 005912 81 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEG------NFGD-PL 153 (670)
Q Consensus 81 g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g------~~pd-ty 153 (670)
| +.++|+..|.+... .. ..+..+|..+..+|...|++++|...|..+.............. ..+. .+
T Consensus 112 g---~~~~A~~~~~~al~--~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (368)
T 1fch_A 112 E---QELLAISALRRCLE--LK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSK 185 (368)
T ss_dssp T---CHHHHHHHHHHHHH--HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------
T ss_pred c---CHHHHHHHHHHHHh--cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHH
Confidence 9 78999999999987 22 33678999999999999999999999999987654322111000 0000 11
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHH
Q 005912 154 SLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKR 233 (670)
Q Consensus 154 n~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~ 233 (670)
+ .+..+.+.|++++|..+|+.+.+.... .++.. .+..+... +...|..++|..
T Consensus 186 ~-~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~----~~~~l~~~---------------------~~~~g~~~~A~~ 238 (368)
T 1fch_A 186 R-ILGSLLSDSLFLEVKELFLAAVRLDPT-SIDPD----VQCGLGVL---------------------FNLSGEYDKAVD 238 (368)
T ss_dssp C-TTHHHHHHHHHHHHHHHHHHHHHHSTT-SCCHH----HHHHHHHH---------------------HHHTTCHHHHHH
T ss_pred H-HHHHHhhcccHHHHHHHHHHHHHhCcC-cccHH----HHHHHHHH---------------------HHHcCCHHHHHH
Confidence 1 244445899999999999999876521 11222 23333333 366789999999
Q ss_pred HHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccc
Q 005912 234 WVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHV 313 (670)
Q Consensus 234 lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~ 313 (670)
+|+..... .|+. ..+|..+ ...|.+.|+.++|+.+|+......-. +...+..+-..+.
T Consensus 239 ~~~~al~~--~~~~-~~~~~~l----~~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~l~~~~~---------- 296 (368)
T 1fch_A 239 CFTAALSV--RPND-YLLWNKL----GATLANGNQSEEAVAAYRRALELQPG-----YIRSRYNLGISCI---------- 296 (368)
T ss_dssp HHHHHHHH--CTTC-HHHHHHH----HHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHH----------
T ss_pred HHHHHHHh--CcCC-HHHHHHH----HHHHHHcCCHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHH----------
Confidence 99887653 2432 2345444 47889999999999999998765322 3444444444444
Q ss_pred cccccCCHHHHHHHHHHHHhCCCCC-----------HHHHHHHHHHHHHhCChhhhhcC
Q 005912 314 LKPKAASKMVVSELKEELDAQGLPT-----------DGTRNVLYQRVQKARRINRSRGR 361 (670)
Q Consensus 314 L~~~~g~~~~A~~l~~~M~~~Gip~-----------d~t~~~Ll~a~~~aG~~~eA~~~ 361 (670)
..|.+++|...|++.....-.. ..+|..+..++...|+.++|..+
T Consensus 297 ---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 297 ---NLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp ---HHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred ---HCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 4566999999998886533211 47899999999999999998754
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.08 E-value=4.1e-07 Score=93.74 Aligned_cols=289 Identities=13% Similarity=0.030 Sum_probs=202.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC----CHHHHHHH-----
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP----DTETYNCV----- 73 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P----d~~tyn~L----- 73 (670)
..|...|++++|+..|++..+.. .-+...|..+-..|.+.|++++|...|++... +.| +...|..+
T Consensus 45 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~ 119 (359)
T 3ieg_A 45 TVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK----SNPSEQEEKEAESQLVKADE 119 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT----SCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHh----cCCcccChHHHHHHHHHHHH
Confidence 46788999999999999988752 23678899999999999999999999999872 245 44555554
Q ss_pred -------HHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccC
Q 005912 74 -------IQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNE 146 (670)
Q Consensus 74 -------I~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~ 146 (670)
...+...| +.++|+.+|.+.... ...+..++..+..+|...|++++|...+..+.+....
T Consensus 120 ~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------- 186 (359)
T 3ieg_A 120 MQRLRSQALDAFDGA---DYTAAITFLDKILEV---CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD------- 186 (359)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-------
T ss_pred HHHHHHHHHHHHHcc---CHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-------
Confidence 47888899 789999999999872 2346788999999999999999999999998875321
Q ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCC
Q 005912 147 GNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGG 226 (670)
Q Consensus 147 g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g 226 (670)
.+.+|..+...|.+.|++++|...|+...+.... .+... ..+..+ ......+ .....+...|
T Consensus 187 --~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~---~~~~~~-~~~~~~~-----------~~a~~~~~~~ 248 (359)
T 3ieg_A 187 --NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCF---AHYKQV-KKLNKLI-----------ESAEELIRDG 248 (359)
T ss_dssp --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHH---HHHHHH-HHHHHHH-----------HHHHHHHHTT
T ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHH---HHHHHH-HHHHHHH-----------HHHHHHHHcC
Confidence 1238999999999999999999999998876421 11111 011111 1000000 0123356678
Q ss_pred cHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHcc
Q 005912 227 LTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLI 306 (670)
Q Consensus 227 ~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~ 306 (670)
..++|...++...... |+.. ..+......+...|.+.|+.++|+.+|+......-. +...+..+-..+.
T Consensus 249 ~~~~A~~~~~~~~~~~--~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~~~~--- 317 (359)
T 3ieg_A 249 RYTDATSKYESVMKTE--PSVA-EYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD-----NVNALKDRAEAYL--- 317 (359)
T ss_dssp CHHHHHHHHHHHHHHC--CSSH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHH---
T ss_pred CHHHHHHHHHHHHhcC--CCch-HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-----cHHHHHHHHHHHH---
Confidence 8999999998876532 4421 222222223557889999999999999998875321 3444444334443
Q ss_pred CCCcccccccccCCHHHHHHHHHHHHhCCCCCH-HHHHHHHHHH
Q 005912 307 KGPEQHVLKPKAASKMVVSELKEELDAQGLPTD-GTRNVLYQRV 349 (670)
Q Consensus 307 ~~p~~~~L~~~~g~~~~A~~l~~~M~~~Gip~d-~t~~~Ll~a~ 349 (670)
..|.+++|...|++..+.. |.. ..+..|..+.
T Consensus 318 ----------~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 318 ----------IEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQ 350 (359)
T ss_dssp ----------HTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHH
T ss_pred ----------HcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 4567999999999998765 433 4555554443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.08 E-value=6.9e-08 Score=98.73 Aligned_cols=270 Identities=9% Similarity=-0.063 Sum_probs=195.4
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC
Q 005912 26 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 105 (670)
Q Consensus 26 v~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P 105 (670)
...+...+..+...|...|++++|..+|+++.. . -..+...+..++.++.+.| +.++|+.+|.++... . .-
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~--~-~p~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~~--~-~~ 88 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVME--K-DPFHASCLPVHIGTLVELN---KANELFYLSHKLVDL--Y-PS 88 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHH--H-CTTCTTTHHHHHHHHHHHT---CHHHHHHHHHHHHHH--C-TT
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--c-CCCChhhHHHHHHHHHHhh---hHHHHHHHHHHHHHh--C-cC
Confidence 445666778888999999999999999999873 1 1234566777888999999 889999999999872 1 23
Q ss_pred CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC
Q 005912 106 NVKTYALLVECFTKYC-AVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVP 184 (670)
Q Consensus 106 d~~Ty~~LL~a~ak~g-~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~ 184 (670)
+..+|..+...|...| ++++|.+.|......... .+.+|..+...|...|++++|...|+...+.... .
T Consensus 89 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~ 158 (330)
T 3hym_B 89 NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT---------YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-C 158 (330)
T ss_dssp STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT---------CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-C
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc---------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-c
Confidence 5678888999999999 999999999998875321 1238999999999999999999999998876521 1
Q ss_pred CchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHH
Q 005912 185 PRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRC 264 (670)
Q Consensus 185 p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~ 264 (670)
+.. +..+.. .+...|..++|..+|+...... |+. ..++.. +...|.
T Consensus 159 ~~~------~~~l~~---------------------~~~~~~~~~~A~~~~~~al~~~--~~~-~~~~~~----l~~~~~ 204 (330)
T 3hym_B 159 HLP------MLYIGL---------------------EYGLTNNSKLAERFFSQALSIA--PED-PFVMHE----VGVVAF 204 (330)
T ss_dssp SHH------HHHHHH---------------------HHHHTTCHHHHHHHHHHHHTTC--TTC-HHHHHH----HHHHHH
T ss_pred HHH------HHHHHH---------------------HHHHHhhHHHHHHHHHHHHHhC--CCC-hHHHHH----HHHHHH
Confidence 211 222222 2366788999999999887642 432 234433 447889
Q ss_pred hcCCHHHHHHHHHHHHHCCCCc---cC-CCCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHHhCCCCCHH
Q 005912 265 LEDGKKYHRKLLRTLQNEGPAV---LG-DVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTDG 340 (670)
Q Consensus 265 ~~G~~e~A~~Lf~~M~~~gv~~---~g-~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~Gip~d~ 340 (670)
+.|+.++|..+|+......-.. .. ......+..+-..+. ..|.+++|...+++.....-....
T Consensus 205 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~-------------~~g~~~~A~~~~~~a~~~~~~~~~ 271 (330)
T 3hym_B 205 QNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR-------------KLKKYAEALDYHRQALVLIPQNAS 271 (330)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHH-------------HTTCHHHHHHHHHHHHHHSTTCSH
T ss_pred HcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHH-------------HhcCHHHHHHHHHHHHhhCccchH
Confidence 9999999999999887642110 00 012233333333333 456799999999999876533347
Q ss_pred HHHHHHHHHHHhCChhhhhcC
Q 005912 341 TRNVLYQRVQKARRINRSRGR 361 (670)
Q Consensus 341 t~~~Ll~a~~~aG~~~eA~~~ 361 (670)
.+..+-..+.+.|++++|...
T Consensus 272 ~~~~la~~~~~~g~~~~A~~~ 292 (330)
T 3hym_B 272 TYSAIGYIHSLMGNFENAVDY 292 (330)
T ss_dssp HHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHH
Confidence 888899999999999988643
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.6e-08 Score=104.79 Aligned_cols=276 Identities=8% Similarity=0.083 Sum_probs=193.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHH
Q 005912 2 IAEDCKAGDHSNALEIAYEMEAAGRMATT--FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 79 (670)
Q Consensus 2 I~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~--~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k 79 (670)
|+-.-..|++..|+..++.... ..|+. ...-.+..+|...|+++.|...|+... .|+..++..+...|..
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~------~~~~~a~~~la~~~~~ 77 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSS------APELQAVRMFAEYLAS 77 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTS------CHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccC------ChhHHHHHHHHHHHcC
Confidence 3445678999999998876543 33443 344667789999999999998775543 6788999999999999
Q ss_pred cCCcccHHHHHHHHHHhHhccCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHH
Q 005912 80 AESYDRVQDVAELLGMMVEDHKRLQPNV-KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLR 158 (670)
Q Consensus 80 ~g~~~~~~eAl~lf~eM~~~~~gi~Pd~-~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ 158 (670)
.| +.++|++.|+++.. .++.|+. ..+..+-.+|...|++++|.+.++. +.+. +++..+..
T Consensus 78 ~~---~~~~A~~~l~~ll~--~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~--------~~~~~l~~ 138 (291)
T 3mkr_A 78 HS---RRDAIVAELDREMS--RSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSL--------ECMAMTVQ 138 (291)
T ss_dssp ST---THHHHHHHHHHHHH--SCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSH--------HHHHHHHH
T ss_pred CC---cHHHHHHHHHHHHh--cccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCH--------HHHHHHHH
Confidence 99 78999999999988 6666764 4455566889999999999999986 2222 28899999
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHh
Q 005912 159 ALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRR 238 (670)
Q Consensus 159 ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m 238 (670)
.|.+.|++++|...|+.+.+.+ |+.. ...+..++. ..+...|..++|..+|+.+
T Consensus 139 ~~~~~g~~~~A~~~l~~~~~~~----p~~~-----~~~l~~a~~-----------------~l~~~~~~~~eA~~~~~~~ 192 (291)
T 3mkr_A 139 ILLKLDRLDLARKELKKMQDQD----EDAT-----LTQLATAWV-----------------SLAAGGEKLQDAYYIFQEM 192 (291)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC----TTCH-----HHHHHHHHH-----------------HHHHCTTHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhC----cCcH-----HHHHHHHHH-----------------HHHhCchHHHHHHHHHHHH
Confidence 9999999999999999998864 3332 122222221 1124568899999999998
Q ss_pred ccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCccccccccc
Q 005912 239 GKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKA 318 (670)
Q Consensus 239 ~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~ 318 (670)
... .|+. ...|+.+ ...|.+.|++++|+..|++.....-. +...+..+...+...
T Consensus 193 l~~--~p~~-~~~~~~l----a~~~~~~g~~~eA~~~l~~al~~~p~-----~~~~l~~l~~~~~~~------------- 247 (291)
T 3mkr_A 193 ADK--CSPT-LLLLNGQ----AACHMAQGRWEAAEGVLQEALDKDSG-----HPETLINLVVLSQHL------------- 247 (291)
T ss_dssp HHH--SCCC-HHHHHHH----HHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHT-------------
T ss_pred HHh--CCCc-HHHHHHH----HHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHc-------------
Confidence 764 2432 2445444 37889999999999999998765432 455555555444443
Q ss_pred CCHHH-HHHHHHHHHhCCCCCHHHHHHHHHHHHHhCChhhhh
Q 005912 319 ASKMV-VSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSR 359 (670)
Q Consensus 319 g~~~~-A~~l~~~M~~~Gip~d~t~~~Ll~a~~~aG~~~eA~ 359 (670)
|+..+ +.++++++.+.. |.+.. +.....+.+.++++.
T Consensus 248 g~~~eaa~~~~~~~~~~~-P~~~~---~~d~~~~~~~fd~~~ 285 (291)
T 3mkr_A 248 GKPPEVTNRYLSQLKDAH-RSHPF---IKEYRAKENDFDRLV 285 (291)
T ss_dssp TCCHHHHHHHHHHHHHHC-TTCHH---HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC-CCChH---HHHHHHHHHHHHHHH
Confidence 33544 567888887654 33321 223344555555543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.04 E-value=2.3e-08 Score=104.59 Aligned_cols=227 Identities=11% Similarity=-0.011 Sum_probs=171.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
..|.+.|++++|+.+|+++.+.. ..+..+|..+...|.+.|++++|...|++... .. ..+..+|..+...|...|
T Consensus 72 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~-~~~~~~~~~l~~~~~~~g- 146 (368)
T 1fch_A 72 LRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLE--LK-PDNQTALMALAVSFTNES- 146 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC-TTCHHHHHHHHHHHHHTT-
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHh--cC-CCCHHHHHHHHHHHHHcC-
Confidence 46788999999999999999763 44788899999999999999999999999873 21 347889999999999999
Q ss_pred cccHHHHHHHHHHhHhccCCCCCCHH-HHHH---------------HHHHHHHcCCHHHHHHHHHHHHHccCCCcccccC
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQPNVK-TYAL---------------LVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNE 146 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~Pd~~-Ty~~---------------LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~ 146 (670)
+.++|+..|.++.. . .|+.. .+.. .+..+...|++++|..+|..+.+......
T Consensus 147 --~~~~A~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~----- 215 (368)
T 1fch_A 147 --LQRQACEILRDWLR--Y--TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSI----- 215 (368)
T ss_dssp --CHHHHHHHHHHHHH--T--STTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSC-----
T ss_pred --CHHHHHHHHHHHHH--h--CcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcc-----
Confidence 88999999999987 2 23322 2211 24444599999999999999987543210
Q ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCC
Q 005912 147 GNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGG 226 (670)
Q Consensus 147 g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g 226 (670)
.+.+|+.+...|.+.|++++|...|+...+... .+.. .+..+... +...|
T Consensus 216 --~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~---~~~~----~~~~l~~~---------------------~~~~g 265 (368)
T 1fch_A 216 --DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP---NDYL----LWNKLGAT---------------------LANGN 265 (368)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHH----HHHHHHHH---------------------HHHTT
T ss_pred --cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---CCHH----HHHHHHHH---------------------HHHcC
Confidence 122899999999999999999999999877642 2221 23333333 36678
Q ss_pred cHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005912 227 LTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNE 282 (670)
Q Consensus 227 ~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~ 282 (670)
..++|..+|+..... .|+. ..+|.. +...|.+.|+.++|...|+.....
T Consensus 266 ~~~~A~~~~~~al~~--~~~~-~~~~~~----l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 266 QSEEAVAAYRRALEL--QPGY-IRSRYN----LGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp CHHHHHHHHHHHHHH--CTTC-HHHHHH----HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCCc-HHHHHH----HHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999987653 2432 134433 448889999999999999988754
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.1e-08 Score=107.49 Aligned_cols=227 Identities=11% Similarity=-0.014 Sum_probs=167.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
..|.+.|++++|+.+|+++.... ..+..+|+.+...|.+.|++++|...|++... .. ..+..+|+.+...|.+.|
T Consensus 73 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~-p~~~~~~~~l~~~~~~~g- 147 (365)
T 4eqf_A 73 LKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLE--LQ-PNNLKALMALAVSYTNTS- 147 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC-TTCHHHHHHHHHHHHHTT-
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cC-CCCHHHHHHHHHHHHccc-
Confidence 46788999999999999998753 34788999999999999999999999999873 11 345889999999999999
Q ss_pred cccHHHHHHHHHHhHhccCCCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCch
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQPN-----------VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGD 151 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~Pd-----------~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pd 151 (670)
+.++|+..|.++.. +.|+ ..++..+...|.+.|++++|..+|..+.+..... ..+.
T Consensus 148 --~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~ 214 (365)
T 4eqf_A 148 --HQQDACEALKNWIK----QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDM-------IDPD 214 (365)
T ss_dssp --CHHHHHHHHHHHHH----HCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSS-------CCHH
T ss_pred --cHHHHHHHHHHHHH----hCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCc-------cCHH
Confidence 78899999999876 2233 2334456788999999999999999998854321 0233
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHH
Q 005912 152 PLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGER 231 (670)
Q Consensus 152 tyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a 231 (670)
+|+.+...|.+.|++++|...|+...+... .+.. .+..+...+ ...|..++|
T Consensus 215 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---~~~~----~~~~l~~~~---------------------~~~g~~~~A 266 (365)
T 4eqf_A 215 LQTGLGVLFHLSGEFNRAIDAFNAALTVRP---EDYS----LWNRLGATL---------------------ANGDRSEEA 266 (365)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHH----HHHHHHHHH---------------------HHTTCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CCHH----HHHHHHHHH---------------------HHcCCHHHH
Confidence 899999999999999999999999887642 2221 244444333 667899999
Q ss_pred HHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005912 232 KRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNE 282 (670)
Q Consensus 232 ~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~ 282 (670)
...|+..... .|+. ..+|..+ ...|.+.|+.++|...|+.....
T Consensus 267 ~~~~~~al~~--~p~~-~~~~~~l----~~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 267 VEAYTRALEI--QPGF-IRSRYNL----GISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHH--CTTC-HHHHHHH----HHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--CCCc-hHHHHHH----HHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999988653 2442 2444434 47889999999999999988754
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1.4e-07 Score=103.92 Aligned_cols=245 Identities=9% Similarity=-0.027 Sum_probs=148.6
Q ss_pred HHHHHHHHHHhHhccCCCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHH
Q 005912 86 VQDVAELLGMMVEDHKRLQPN--------VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYL 157 (670)
Q Consensus 86 ~~eAl~lf~eM~~~~~gi~Pd--------~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI 157 (670)
.++|+.+|.++.. ..|+ ..+|..+-..+...|++++|...|....+.... +.+|..+-
T Consensus 218 ~~~A~~~~~~~l~----~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~l~ 283 (537)
T 3fp2_A 218 LTKSTDMYHSLLS----ANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT----------PNSYIFLA 283 (537)
T ss_dssp HHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----------HHHHHHHH
T ss_pred HHHHHHHHHHHHH----HCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC----------chHHHHHH
Confidence 3445555555544 2343 446777778888999999999999998875322 22788888
Q ss_pred HHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHH---------HHHHHHHHHHHHHcCC-CHHH---HHHHHHc
Q 005912 158 RALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTL---------VSSWIEPLQEEAELGY-EIDY---IARYISE 224 (670)
Q Consensus 158 ~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~l---------l~a~~~ll~~m~~~G~-~pd~---i~~~~~~ 224 (670)
..|.+.|++++|...|+...+.... .+.. +..+ ...+...+....+..- .+.. +...+..
T Consensus 284 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~------~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 356 (537)
T 3fp2_A 284 LTLADKENSQEFFKFFQKAVDLNPE-YPPT------YYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYK 356 (537)
T ss_dssp HHTCCSSCCHHHHHHHHHHHHHCTT-CHHH------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHhccCCC-CHHH------HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 8899999999999999988776421 1211 2222 2333344554444322 1222 3355667
Q ss_pred CCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-ccCCCCHHHHHHHHHHHH
Q 005912 225 GGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPA-VLGDVSESDYVRVEERLK 303 (670)
Q Consensus 225 ~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~-~~g~~~~~~~~~~l~~l~ 303 (670)
.|..++|..+|+...... |+. ..+|.. +...|.+.|+.++|...|+......-. +......+.+...-..+.
T Consensus 357 ~g~~~~A~~~~~~~~~~~--~~~-~~~~~~----l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~ 429 (537)
T 3fp2_A 357 QGKFTESEAFFNETKLKF--PTL-PEVPTF----FAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILA 429 (537)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTC-THHHHH----HHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--CCC-hHHHHH----HHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHH
Confidence 788999999988876532 332 133433 347778899999999999887654211 000112222222112222
Q ss_pred HccCCCcccccccccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCChhhhhcC
Q 005912 304 KLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGR 361 (670)
Q Consensus 304 k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~Gip~d~t~~~Ll~a~~~aG~~~eA~~~ 361 (670)
.... ... ..-..|.+++|..+|++.....-.+...+..+...+...|+.++|...
T Consensus 430 ~~~~--~~~-~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 484 (537)
T 3fp2_A 430 RQSS--QDP-TQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIEL 484 (537)
T ss_dssp HHHT--C-----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhh--ccc-hhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 2100 000 000116789999999999876533447888899999999999998754
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.01 E-value=1e-09 Score=120.05 Aligned_cols=280 Identities=11% Similarity=-0.005 Sum_probs=92.0
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccH
Q 005912 7 KAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRV 86 (670)
Q Consensus 7 k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~ 86 (670)
+.|++++|.++++++.. ..+|..|..++.+.|++++|.+.|.+ .+|..+|..++.++.+.| +.
T Consensus 15 ~~~~ld~A~~fae~~~~------~~vWs~La~A~l~~g~~~eAIdsfik--------a~D~~~y~~V~~~ae~~g---~~ 77 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE------PAVWSQLAKAQLQKGMVKEAIDSYIK--------ADDPSSYMEVVQAANTSG---NW 77 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC------hHHHHHHHHHHHHcCCHHHHHHHHHc--------CCCHHHHHHHHHHHHhCC---CH
Confidence 44666777777766632 24667777777777777777777743 245556777777777666 55
Q ss_pred HHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCH
Q 005912 87 QDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRI 166 (670)
Q Consensus 87 ~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~ 166 (670)
++|.+.+...++ . .++..+.+.|+.+|++.|++.++.++++. |+.. +|+.+-+.|...|++
T Consensus 78 EeAi~yl~~ark---~-~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-------pn~~--------a~~~IGd~~~~~g~y 138 (449)
T 1b89_A 78 EELVKYLQMARK---K-ARESYVETELIFALAKTNRLAELEEFING-------PNNA--------HIQQVGDRCYDEKMY 138 (449)
T ss_dssp -----------------------------------CHHHHTTTTTC-------C------------------------CT
T ss_pred HHHHHHHHHHHH---h-CccchhHHHHHHHHHHhCCHHHHHHHHcC-------CcHH--------HHHHHHHHHHHcCCH
Confidence 566664444333 1 34456666677777777777666665531 1111 555666666666666
Q ss_pred HHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCH---HHHHHHHHcCCcHHHHHHHHHHhccCCC
Q 005912 167 IELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEI---DYIARYISEGGLTGERKRWVPRRGKTPL 243 (670)
Q Consensus 167 eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~p---d~i~~~~~~~g~~~~a~~lf~~m~~~gi 243 (670)
++|...|..+. .+..+...+..-+-..++++.+... + .| ..+...|...|..+.|......+.
T Consensus 139 eeA~~~Y~~a~------n~~~LA~~L~~Lg~yq~AVea~~KA---~-~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---- 204 (449)
T 1b89_A 139 DAAKLLYNNVS------NFGRLASTLVHLGEYQAAVDGARKA---N-STRTWKEVCFACVDGKEFRLAQMCGLHIV---- 204 (449)
T ss_dssp TTHHHHHHHTT------CHHHHHHHHHTTTCHHHHHHHHHHH---T-CHHHHHHHHHHHHHTTCHHHHHHTTTTTT----
T ss_pred HHHHHHHHHhh------hHHHHHHHHHHhccHHHHHHHHHHc---C-CchhHHHHHHHHHHcCcHHHHHHHHHHHH----
Confidence 66666666440 1111111111111112222222222 1 23 233455677888888855444322
Q ss_pred CCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHHH
Q 005912 244 DPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMV 323 (670)
Q Consensus 244 ~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~ 323 (670)
..+++ +..++..|.+.|++++|..+|+.-.... + ...+.++.+-..+.+- +.+..++
T Consensus 205 -~~ad~------l~~lv~~Yek~G~~eEai~lLe~aL~le-~----ah~~~ftel~il~~ky-----------~p~k~~e 261 (449)
T 1b89_A 205 -VHADE------LEELINYYQDRGYFEELITMLEAALGLE-R----AHMGMFTELAILYSKF-----------KPQKMRE 261 (449)
T ss_dssp -TCHHH------HHHHHHHHHHTTCHHHHHHHHHHHTTST-T----CCHHHHHHHHHHHHTT-----------CHHHHHH
T ss_pred -hCHhh------HHHHHHHHHHCCCHHHHHHHHHHHhCCc-H----HHHHHHHHHHHHHHhc-----------CHHHHHH
Confidence 22322 2345688999999999999998876444 2 4566666654444442 3344555
Q ss_pred HHHHHHHHHhCCCCC-----H--HHHHHHHHHHHHhCChhhhhcC
Q 005912 324 VSELKEELDAQGLPT-----D--GTRNVLYQRVQKARRINRSRGR 361 (670)
Q Consensus 324 A~~l~~~M~~~Gip~-----d--~t~~~Ll~a~~~aG~~~eA~~~ 361 (670)
..++|. .+-.+|+ . ..|.-++..|.+.+.++.|...
T Consensus 262 hl~~~~--~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 262 HLELFW--SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHS--TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHH--HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 555554 2333455 2 4677788888889999888653
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=98.98 E-value=5.2e-08 Score=99.53 Aligned_cols=225 Identities=11% Similarity=-0.038 Sum_probs=167.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
..+.+.|++++|+.+|+++.... ..+...|..+...|.+.|++++|...|+++.. . ...+..+|..+...|...|
T Consensus 29 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~-~~~~~~~~~~la~~~~~~~- 103 (327)
T 3cv0_A 29 LSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARM--L-DPKDIAVHAALAVSHTNEH- 103 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHTT-
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--c-CcCCHHHHHHHHHHHHHcC-
Confidence 35778999999999999988753 34778899999999999999999999999873 1 1346889999999999999
Q ss_pred cccHHHHHHHHHHhHhccCCCCCCHH-HHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHccCCCcccccC
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQPNVK-TYALL--------------VE-CFTKYCAVTEAIRHFRALQNYEGGTKVLHNE 146 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~Pd~~-Ty~~L--------------L~-a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~ 146 (670)
+.++|+..|.+... . .|+.. .+..+ .. .+...|++++|..++..+.+.... +
T Consensus 104 --~~~~A~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~----- 171 (327)
T 3cv0_A 104 --NANAALASLRAWLL--S--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-D----- 171 (327)
T ss_dssp --CHHHHHHHHHHHHH--T--STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-C-----
T ss_pred --CHHHHHHHHHHHHH--h--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-C-----
Confidence 78899999999887 2 23322 22222 11 377889999999999998875322 1
Q ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCC
Q 005912 147 GNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGG 226 (670)
Q Consensus 147 g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g 226 (670)
+.++..+...|.+.|++++|...|+...+... .+.. .+..+... +...|
T Consensus 172 ---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---~~~~----~~~~l~~~---------------------~~~~~ 220 (327)
T 3cv0_A 172 ---AQLHASLGVLYNLSNNYDSAAANLRRAVELRP---DDAQ----LWNKLGAT---------------------LANGN 220 (327)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHH----HHHHHHHH---------------------HHHTT
T ss_pred ---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC---CcHH----HHHHHHHH---------------------HHHcC
Confidence 22789999999999999999999999877642 2221 23333322 36678
Q ss_pred cHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005912 227 LTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNE 282 (670)
Q Consensus 227 ~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~ 282 (670)
..++|..+|+..... .|+. ..+|.. +...|.+.|+.++|...|+.....
T Consensus 221 ~~~~A~~~~~~a~~~--~~~~-~~~~~~----l~~~~~~~g~~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 221 RPQEALDAYNRALDI--NPGY-VRVMYN----MAVSYSNMSQYDLAAKQLVRAIYM 269 (327)
T ss_dssp CHHHHHHHHHHHHHH--CTTC-HHHHHH----HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--CCCC-HHHHHH----HHHHHHHhccHHHHHHHHHHHHHh
Confidence 899999999887653 2332 134433 447889999999999999988754
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.95 E-value=4.4e-08 Score=102.91 Aligned_cols=271 Identities=10% Similarity=-0.060 Sum_probs=186.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CH
Q 005912 29 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NV 107 (670)
Q Consensus 29 d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~ 107 (670)
+...|..+-..|.+.|++++|..+|+++.. . -..+..+|+.+...|.+.| +.++|+..|.+... +.| +.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~-~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~----~~p~~~ 133 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAIL--Q-DPGDAEAWQFLGITQAENE---NEQAAIVALQRCLE----LQPNNL 133 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HCTTCH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHH--h-CcCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHh----cCCCCH
Confidence 344578888999999999999999999873 1 1346889999999999999 88999999999987 234 57
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCc-ccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCc
Q 005912 108 KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTK-VLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPR 186 (670)
Q Consensus 108 ~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~-v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~ 186 (670)
.+|..+..+|.+.|++++|..+|..+.+...... .....+..+..++.+...|.+.|++++|..+|+++.+.+.. ..+
T Consensus 134 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~ 212 (365)
T 4eqf_A 134 KALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGD-MID 212 (365)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCS-SCC
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcC-ccC
Confidence 8999999999999999999999999987432111 11000011125566788999999999999999999886521 112
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhc
Q 005912 187 AMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLE 266 (670)
Q Consensus 187 ~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~ 266 (670)
.. .+..+... +...|..++|..+|+..... .|+. ..+|+.+. ..|.+.
T Consensus 213 ~~----~~~~l~~~---------------------~~~~g~~~~A~~~~~~al~~--~p~~-~~~~~~l~----~~~~~~ 260 (365)
T 4eqf_A 213 PD----LQTGLGVL---------------------FHLSGEFNRAIDAFNAALTV--RPED-YSLWNRLG----ATLANG 260 (365)
T ss_dssp HH----HHHHHHHH---------------------HHHHTCHHHHHHHHHHHHHH--CTTC-HHHHHHHH----HHHHHT
T ss_pred HH----HHHHHHHH---------------------HHHCCCHHHHHHHHHHHHHh--CCCC-HHHHHHHH----HHHHHc
Confidence 22 23333332 35567899999999887653 2332 24555444 788999
Q ss_pred CCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHHhCCC----C-----
Q 005912 267 DGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGL----P----- 337 (670)
Q Consensus 267 G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~Gi----p----- 337 (670)
|+.++|+..|+......-. +...+..+-..+. ..|++++|...|++.....- +
T Consensus 261 g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~-------------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 322 (365)
T 4eqf_A 261 DRSEEAVEAYTRALEIQPG-----FIRSRYNLGISCI-------------NLGAYREAVSNFLTALSLQRKSRNQQQVPH 322 (365)
T ss_dssp TCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHH-------------HHTCCHHHHHHHHHHHHHHHCC--------
T ss_pred CCHHHHHHHHHHHHhcCCC-----chHHHHHHHHHHH-------------HCCCHHHHHHHHHHHHHhCcccCCCcccch
Confidence 9999999999998876322 3444444444444 34568899999988865321 1
Q ss_pred ---CHHHHHHHHHHHHHhCChhhhhc
Q 005912 338 ---TDGTRNVLYQRVQKARRINRSRG 360 (670)
Q Consensus 338 ---~d~t~~~Ll~a~~~aG~~~eA~~ 360 (670)
....|..|-.++...|+.+.+..
T Consensus 323 ~~~~~~~~~~l~~~~~~~g~~~~a~~ 348 (365)
T 4eqf_A 323 PAISGNIWAALRIALSLMDQPELFQA 348 (365)
T ss_dssp ----CHHHHHHHHHHHHHTCHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHcCcHHHHHH
Confidence 23678889999999999887764
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=98.91 E-value=4.8e-08 Score=101.21 Aligned_cols=223 Identities=9% Similarity=0.025 Sum_probs=163.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC-HHHHHHHHHHHHHc
Q 005912 2 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD-TETYNCVIQAYTRA 80 (670)
Q Consensus 2 I~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd-~~tyn~LI~ay~k~ 80 (670)
..+|...|+++.|+..++. .-.|+..++..+...|.+.|+.++|...|+++. ..++.|+ ...+..+-..|.+.
T Consensus 41 ~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll--~~~~~P~~~~~~~~la~~~~~~ 114 (291)
T 3mkr_A 41 YRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVAELDREM--SRSVDVTNTTFLLMAASIYFYD 114 (291)
T ss_dssp HHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHH--HSCCCCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHH--hcccCCCCHHHHHHHHHHHHHC
Confidence 4678899999999987754 245678899999999999999999999999987 4555565 44555556889999
Q ss_pred CCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHH
Q 005912 81 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRAL 160 (670)
Q Consensus 81 g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay 160 (670)
| +.++|++.|.+ ..+..++..+...|.+.|++++|.+.|+.+.+........ ....+++..+
T Consensus 115 g---~~~~Al~~l~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-------~l~~a~~~l~ 176 (291)
T 3mkr_A 115 Q---NPDAALRTLHQ--------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLT-------QLATAWVSLA 176 (291)
T ss_dssp T---CHHHHHHHHTT--------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-------HHHHHHHHHH
T ss_pred C---CHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHH-------HHHHHHHHHH
Confidence 9 88999999875 3577899999999999999999999999998754211000 0123344555
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhcc
Q 005912 161 CREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGK 240 (670)
Q Consensus 161 ~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~ 240 (670)
...|++++|..+|+++.+.. +.+.. .++.+...+ .+.|..++|...|+....
T Consensus 177 ~~~~~~~eA~~~~~~~l~~~---p~~~~----~~~~la~~~---------------------~~~g~~~eA~~~l~~al~ 228 (291)
T 3mkr_A 177 AGGEKLQDAYYIFQEMADKC---SPTLL----LLNGQAACH---------------------MAQGRWEAAEGVLQEALD 228 (291)
T ss_dssp HCTTHHHHHHHHHHHHHHHS---CCCHH----HHHHHHHHH---------------------HHTTCHHHHHHHHHHHHH
T ss_pred hCchHHHHHHHHHHHHHHhC---CCcHH----HHHHHHHHH---------------------HHcCCHHHHHHHHHHHHH
Confidence 55699999999999998874 23332 244444433 677899999999998765
Q ss_pred CCCCCCcccchhhhhHHHHHHHHHhcCCHHH-HHHHHHHHHHCC
Q 005912 241 TPLDPDAVGFIYSNPMETSFKQRCLEDGKKY-HRKLLRTLQNEG 283 (670)
Q Consensus 241 ~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~-A~~Lf~~M~~~g 283 (670)
. .|+. .-++..+. ..+...|+..+ +.++++.+....
T Consensus 229 ~--~p~~-~~~l~~l~----~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 229 K--DSGH-PETLINLV----VLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp H--CTTC-HHHHHHHH----HHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred h--CCCC-HHHHHHHH----HHHHHcCCCHHHHHHHHHHHHHhC
Confidence 3 2432 13455454 56677888765 678998877554
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=98.90 E-value=3e-07 Score=93.76 Aligned_cols=261 Identities=10% Similarity=-0.084 Sum_probs=187.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHH
Q 005912 31 FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 110 (670)
Q Consensus 31 ~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty 110 (670)
..+-.+-..|.+.|++++|..+|+++.. . ...+..+|..+...|.+.| +.++|+..|.+... . -..+..+|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~--~-~~~~~~~~ 92 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQ--A-APEREEAWRSLGLTQAENE---KDGLAIIALNHARM--L-DPKDIAVH 92 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH--H-CTTCHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH--h-CCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHh--c-CcCCHHHH
Confidence 3456677788999999999999999873 1 1347889999999999999 78899999999987 2 22367889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHH--------------HH-HHHHcCCHHHHHHHHHH
Q 005912 111 ALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLY--------------LR-ALCREGRIIELLEALEA 175 (670)
Q Consensus 111 ~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~L--------------I~-ay~k~G~~eeA~~vf~~ 175 (670)
..+...|...|++++|.+.+..+......... .+..+ -. .|...|++++|..+|+.
T Consensus 93 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 163 (327)
T 3cv0_A 93 AALAVSHTNEHNANAALASLRAWLLSQPQYEQ---------LGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHA 163 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTT---------C--------------------CCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCccHH---------HHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHH
Confidence 99999999999999999999999875432211 22222 22 37788999999999999
Q ss_pred HhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhh
Q 005912 176 MAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNP 255 (670)
Q Consensus 176 M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~L 255 (670)
+.+... .+.. .+..+... +...|..++|..+++..... .|+. ..+|..
T Consensus 164 ~~~~~~---~~~~----~~~~la~~---------------------~~~~~~~~~A~~~~~~~~~~--~~~~-~~~~~~- 211 (327)
T 3cv0_A 164 ALEMNP---NDAQ----LHASLGVL---------------------YNLSNNYDSAAANLRRAVEL--RPDD-AQLWNK- 211 (327)
T ss_dssp HHHHST---TCHH----HHHHHHHH---------------------HHHTTCHHHHHHHHHHHHHH--CTTC-HHHHHH-
T ss_pred HHhhCC---CCHH----HHHHHHHH---------------------HHHhccHHHHHHHHHHHHHh--CCCc-HHHHHH-
Confidence 887652 2221 23333322 36678899999999887653 2332 134433
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHHhCC
Q 005912 256 METSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQG 335 (670)
Q Consensus 256 Ie~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~G 335 (670)
+...|.+.|+.++|..+|.......-. +...+..+-..+. ..|.+++|...+++.....
T Consensus 212 ---l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~l~~~~~-------------~~g~~~~A~~~~~~a~~~~ 270 (327)
T 3cv0_A 212 ---LGATLANGNRPQEALDAYNRALDINPG-----YVRVMYNMAVSYS-------------NMSQYDLAAKQLVRAIYMQ 270 (327)
T ss_dssp ---HHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHH-------------HTTCHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHcCCHHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHH-------------HhccHHHHHHHHHHHHHhC
Confidence 347889999999999999998765422 3344444333443 4566999999999886643
Q ss_pred CC------------CHHHHHHHHHHHHHhCChhhhhcCC
Q 005912 336 LP------------TDGTRNVLYQRVQKARRINRSRGRP 362 (670)
Q Consensus 336 ip------------~d~t~~~Ll~a~~~aG~~~eA~~~~ 362 (670)
-. ...++..+...+...|+.++|....
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 271 VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 22 2468888999999999999998654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=98.83 E-value=1.8e-08 Score=110.21 Aligned_cols=104 Identities=14% Similarity=0.161 Sum_probs=8.8
Q ss_pred HcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcC
Q 005912 42 TCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYC 121 (670)
Q Consensus 42 k~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g 121 (670)
++|++++|.++++++. .|+ +|+.|..++.+.| ++++|++.|.+ .+|..+|..++.+|...|
T Consensus 15 ~~~~ld~A~~fae~~~------~~~--vWs~La~A~l~~g---~~~eAIdsfik--------a~D~~~y~~V~~~ae~~g 75 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPA--VWSQLAKAQLQKG---MVKEAIDSYIK--------ADDPSSYMEVVQAANTSG 75 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChH--HHHHHHHHHHHcC---CHHHHHHHHHc--------CCCHHHHHHHHHHHHhCC
Confidence 6888999999999998 554 9999999999999 78899999954 267789999999999999
Q ss_pred CHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHH
Q 005912 122 AVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALE 174 (670)
Q Consensus 122 ~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~ 174 (670)
++++|+..+....+.. +. |.+.+.|+.+|++.|++.++.++|+
T Consensus 76 ~~EeAi~yl~~ark~~-~~---------~~i~~~Li~~Y~Klg~l~e~e~f~~ 118 (449)
T 1b89_A 76 NWEELVKYLQMARKKA-RE---------SYVETELIFALAKTNRLAELEEFIN 118 (449)
T ss_dssp -------------------------------------------CHHHHTTTTT
T ss_pred CHHHHHHHHHHHHHhC-cc---------chhHHHHHHHHHHhCCHHHHHHHHc
Confidence 9999999887766531 11 1278899999999999999998885
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.83 E-value=2.9e-07 Score=90.53 Aligned_cols=221 Identities=13% Similarity=0.065 Sum_probs=168.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC----HHHHHHHHHHHH
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD----TETYNCVIQAYT 78 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd----~~tyn~LI~ay~ 78 (670)
..|.+.|++++|+.+|++..+.. .+...|..+-..|...|++++|...|++.........|+ ..+|..+-..|.
T Consensus 13 ~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 90 (258)
T 3uq3_A 13 NKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYH 90 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHH
Confidence 45778999999999999998877 888999999999999999999999999976310111122 688999999999
Q ss_pred HcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHH
Q 005912 79 RAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLR 158 (670)
Q Consensus 79 k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ 158 (670)
+.| +.++|+..|.+... +.|+. ..+.+.|++++|...+..+...... .+..|..+-.
T Consensus 91 ~~~---~~~~A~~~~~~a~~----~~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~---------~~~~~~~~~~ 147 (258)
T 3uq3_A 91 KLG---DLKKTIEYYQKSLT----EHRTA-------DILTKLRNAEKELKKAEAEAYVNPE---------KAEEARLEGK 147 (258)
T ss_dssp HTT---CHHHHHHHHHHHHH----HCCCH-------HHHHHHHHHHHHHHHHHHHHHCCHH---------HHHHHHHHHH
T ss_pred Hcc---cHHHHHHHHHHHHh----cCchh-------HHHHHHhHHHHHHHHHHHHHHcCcc---------hHHHHHHHHH
Confidence 999 78999999999987 34663 3466778899999999998874211 1127889999
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHh
Q 005912 159 ALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRR 238 (670)
Q Consensus 159 ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m 238 (670)
.|.+.|++++|...|+...+... .+.. .+..+... +...|..++|...|+..
T Consensus 148 ~~~~~~~~~~A~~~~~~a~~~~~---~~~~----~~~~l~~~---------------------~~~~~~~~~A~~~~~~a 199 (258)
T 3uq3_A 148 EYFTKSDWPNAVKAYTEMIKRAP---EDAR----GYSNRAAA---------------------LAKLMSFPEAIADCNKA 199 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT---TCHH----HHHHHHHH---------------------HHHTTCHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCc---ccHH----HHHHHHHH---------------------HHHhCCHHHHHHHHHHH
Confidence 99999999999999999887652 2221 23333332 36678899999999888
Q ss_pred ccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005912 239 GKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEG 283 (670)
Q Consensus 239 ~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~g 283 (670)
... .|+. ..+|.. +...|.+.|+.++|...|+......
T Consensus 200 l~~--~~~~-~~~~~~----l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 200 IEK--DPNF-VRAYIR----KATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHH--CTTC-HHHHHH----HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHh--CHHH-HHHHHH----HHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 653 2432 133433 4478899999999999999886543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=98.81 E-value=8.4e-07 Score=85.19 Aligned_cols=193 Identities=8% Similarity=-0.080 Sum_probs=151.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHc-C
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA-E 81 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~-g 81 (670)
..|...|++++|+.+|++..+.. ..+...|..+...|...|++++|..+|++... . ...+..+|..+...|... |
T Consensus 16 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~-~~~~~~~~~~l~~~~~~~~~ 91 (225)
T 2vq2_A 16 MEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALS--I-KPDSAEINNNYGWFLCGRLN 91 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHH--h-CCCChHHHHHHHHHHHHhcC
Confidence 46788999999999999988752 34678899999999999999999999999873 1 134678899999999999 9
Q ss_pred CcccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHH
Q 005912 82 SYDRVQDVAELLGMMVEDHKRLQPN-VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRAL 160 (670)
Q Consensus 82 ~~~~~~eAl~lf~eM~~~~~gi~Pd-~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay 160 (670)
+.++|+.+|.++.. .+..|+ ..+|..+..+|.+.|++++|...|..+.+..... +..+..+...|
T Consensus 92 ---~~~~A~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~la~~~ 157 (225)
T 2vq2_A 92 ---RPAESMAYFDKALA--DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF---------PPAFKELARTK 157 (225)
T ss_dssp ---CHHHHHHHHHHHHT--STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------HHHHHHHHHHH
T ss_pred ---cHHHHHHHHHHHHc--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------chHHHHHHHHH
Confidence 78999999999986 444454 6788889999999999999999999988753221 22788999999
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhcc
Q 005912 161 CREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGK 240 (670)
Q Consensus 161 ~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~ 240 (670)
.+.|++++|..+|+...+... ..+.. .+..+ ..++...|..+++..+++.+..
T Consensus 158 ~~~~~~~~A~~~~~~~~~~~~--~~~~~----~~~~~---------------------~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 158 MLAGQLGDADYYFKKYQSRVE--VLQAD----DLLLG---------------------WKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHTCHHHHHHHHHHHHHHHC--SCCHH----HHHHH---------------------HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCC--CCCHH----HHHHH---------------------HHHHHhcCcHHHHHHHHHHHHH
Confidence 999999999999999877531 02221 12111 1234677888999999888764
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=98.80 E-value=6.4e-07 Score=88.44 Aligned_cols=193 Identities=10% Similarity=-0.030 Sum_probs=151.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
..|...|++++|+.+|+++.... ..+...|..+...|.+.|++++|..+|++... .. ..+...|..+...|.+.|
T Consensus 45 ~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~-~~~~~~~~~la~~~~~~g- 119 (252)
T 2ho1_A 45 LGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALA--SD-SRNARVLNNYGGFLYEQK- 119 (252)
T ss_dssp HHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC-TTCHHHHHHHHHHHHHTT-
T ss_pred HHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HC-cCcHHHHHHHHHHHHHHh-
Confidence 45778999999999999988753 34678899999999999999999999999873 11 346788999999999999
Q ss_pred cccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALC 161 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~ 161 (670)
+.++|+++|.+... .+..| +...|..+..+|.+.|++++|..+|....+..... +.+|..+...|.
T Consensus 120 --~~~~A~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---------~~~~~~la~~~~ 186 (252)
T 2ho1_A 120 --RYEEAYQRLLEASQ--DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ---------PSVALEMADLLY 186 (252)
T ss_dssp --CHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC---------HHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHh--CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc---------HHHHHHHHHHHH
Confidence 78999999999876 44556 46778888899999999999999999988753221 227889999999
Q ss_pred HcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccC
Q 005912 162 REGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKT 241 (670)
Q Consensus 162 k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~ 241 (670)
+.|++++|..+|+...+... .+.. .+..+. ..+...|..++|..+++.+...
T Consensus 187 ~~g~~~~A~~~~~~~~~~~~---~~~~----~~~~~~---------------------~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 187 KEREYVPARQYYDLFAQGGG---QNAR----SLLLGI---------------------RLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HTTCHHHHHHHHHHHHTTSC---CCHH----HHHHHH---------------------HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCc---CcHH----HHHHHH---------------------HHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999877542 1211 122222 2235678899999999888653
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=98.75 E-value=1.2e-06 Score=96.24 Aligned_cols=258 Identities=11% Similarity=-0.006 Sum_probs=186.0
Q ss_pred CChHHHHHHHHHHHHcCCCCC--------HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHc
Q 005912 9 GDHSNALEIAYEMEAAGRMAT--------TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 80 (670)
Q Consensus 9 G~~~~Al~lf~~M~~~Gv~Pd--------~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~ 80 (670)
|++++|+.+|+++.+. .|+ ..+|..+-..|...|++++|...|++... +.|+..+|..+-..|.+.
T Consensus 216 ~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~l~~~~~~~ 289 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN----LHPTPNSYIFLALTLADK 289 (537)
T ss_dssp HHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCCHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh----cCCCchHHHHHHHHHHHh
Confidence 5789999999998864 344 33567777888899999999999999873 357788999999999999
Q ss_pred CCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHH
Q 005912 81 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRAL 160 (670)
Q Consensus 81 g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay 160 (670)
| +.++|+..|.+.... . ..+..+|..+...|...|++++|...|....+.... .+.+|..+...|
T Consensus 290 ~---~~~~A~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------~~~~~~~la~~~ 354 (537)
T 3fp2_A 290 E---NSQEFFKFFQKAVDL--N-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE---------NVYPYIQLACLL 354 (537)
T ss_dssp S---CCHHHHHHHHHHHHH--C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------CSHHHHHHHHHH
T ss_pred c---CHHHHHHHHHHHhcc--C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHH
Confidence 9 788999999998872 2 235788999999999999999999999999875322 123899999999
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhcc
Q 005912 161 CREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGK 240 (670)
Q Consensus 161 ~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~ 240 (670)
.+.|++++|..+|+...+.... .+. .+..+... +...|..++|...|+....
T Consensus 355 ~~~g~~~~A~~~~~~~~~~~~~-~~~------~~~~l~~~---------------------~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 355 YKQGKFTESEAFFNETKLKFPT-LPE------VPTFFAEI---------------------LTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CTH------HHHHHHHH---------------------HHHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-ChH------HHHHHHHH---------------------HHHhCCHHHHHHHHHHHHH
Confidence 9999999999999998876521 221 13333222 3667889999999888754
Q ss_pred CCCCCCcccchhhhh--HHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCC
Q 005912 241 TPLDPDAVGFIYSNP--METSFKQRCLE----------DGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKG 308 (670)
Q Consensus 241 ~gi~Pd~d~~ty~~L--Ie~lv~~~~~~----------G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~ 308 (670)
.. |+.. ..+..+ +......|.+. |++++|...|+......-. +...+..+-..+.
T Consensus 407 ~~--~~~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-----~~~~~~~l~~~~~----- 473 (537)
T 3fp2_A 407 LE--EVQE-KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-----SEQAKIGLAQLKL----- 473 (537)
T ss_dssp HH--HHCS-SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHH-----
T ss_pred cC--Ccch-hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHH-----
Confidence 22 1111 111111 11123456666 9999999999998876432 3334444334444
Q ss_pred CcccccccccCCHHHHHHHHHHHHhCCC
Q 005912 309 PEQHVLKPKAASKMVVSELKEELDAQGL 336 (670)
Q Consensus 309 p~~~~L~~~~g~~~~A~~l~~~M~~~Gi 336 (670)
..|+.++|..+|++.....-
T Consensus 474 --------~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 474 --------QMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp --------HTTCHHHHHHHHHHHHHHC-
T ss_pred --------HhccHHHHHHHHHHHHHhCC
Confidence 45679999999999987654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=98.71 E-value=2.5e-06 Score=84.16 Aligned_cols=203 Identities=6% Similarity=-0.105 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHH
Q 005912 30 TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 109 (670)
Q Consensus 30 ~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~T 109 (670)
...|..+...|...|++++|..+|+++.. . ...+...|..+...|.+.| +.++|+++|.+... .. ..+..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~-~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~a~~--~~-~~~~~~ 107 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALE--I-DPSSADAHAALAVVFQTEM---EPKLADEEYRKALA--SD-SRNARV 107 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHH--H-CTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH--HC-TTCHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHh--c-CCChHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH--HC-cCcHHH
Confidence 56678888899999999999999999873 1 1346889999999999999 88999999999887 22 236788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHH
Q 005912 110 YALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMI 189 (670)
Q Consensus 110 y~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i 189 (670)
|..+...|...|++++|.++|..+...+..+.. +..|..+...|.+.|++++|...|+...+... .+..
T Consensus 108 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~~- 176 (252)
T 2ho1_A 108 LNNYGGFLYEQKRYEEAYQRLLEASQDTLYPER-------SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR---NQPS- 176 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTH-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS---CCHH-
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhCccCccc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc---ccHH-
Confidence 999999999999999999999998772111111 12788899999999999999999999877642 1211
Q ss_pred HHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCH
Q 005912 190 LSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGK 269 (670)
Q Consensus 190 ~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~ 269 (670)
.+..+... +...|..++|..+++..... .|+. ...+. .+...|.+.|+.
T Consensus 177 ---~~~~la~~---------------------~~~~g~~~~A~~~~~~~~~~--~~~~-~~~~~----~~~~~~~~~g~~ 225 (252)
T 2ho1_A 177 ---VALEMADL---------------------LYKEREYVPARQYYDLFAQG--GGQN-ARSLL----LGIRLAKVFEDR 225 (252)
T ss_dssp ---HHHHHHHH---------------------HHHTTCHHHHHHHHHHHHTT--SCCC-HHHHH----HHHHHHHHTTCH
T ss_pred ---HHHHHHHH---------------------HHHcCCHHHHHHHHHHHHHh--CcCc-HHHHH----HHHHHHHHccCH
Confidence 13333322 36678899999999988653 2332 12333 244778899999
Q ss_pred HHHHHHHHHHHHCC
Q 005912 270 KYHRKLLRTLQNEG 283 (670)
Q Consensus 270 e~A~~Lf~~M~~~g 283 (670)
++|..+++.+....
T Consensus 226 ~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 226 DTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHC
Confidence 99999999998754
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=98.71 E-value=2e-06 Score=82.57 Aligned_cols=203 Identities=8% Similarity=-0.106 Sum_probs=152.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHH
Q 005912 29 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK 108 (670)
Q Consensus 29 d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~ 108 (670)
+...|..+...|...|++++|..+|++... . ...+...|..+...|...| +.++|+..|.+... . ...+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~--~-~~~~~~ 77 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALK--S-DPKNELAWLVRAEIYQYLK---VNDKAQESFRQALS--I-KPDSAE 77 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH--H-CTTCHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--h-CccchHHHHHHHHHHHHcC---ChHHHHHHHHHHHH--h-CCCChH
Confidence 456788889999999999999999999873 1 1345889999999999999 78999999999887 2 123678
Q ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCch
Q 005912 109 TYALLVECFTKY-CAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRA 187 (670)
Q Consensus 109 Ty~~LL~a~ak~-g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~ 187 (670)
+|..+...|... |++++|..++..+.+.+..+.. +.+|..+...|.+.|++++|...|+.+.+... .+.
T Consensus 78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~ 147 (225)
T 2vq2_A 78 INNNYGWFLCGRLNRPAESMAYFDKALADPTYPTP-------YIANLNKGICSAKQGQFGLAEAYLKRSLAAQP---QFP 147 (225)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCH-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---TCH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcch-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCc
Confidence 899999999999 9999999999999872211111 12788999999999999999999999877642 111
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCCCCC-CcccchhhhhHHHHHHHHHhc
Q 005912 188 MILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDP-DAVGFIYSNPMETSFKQRCLE 266 (670)
Q Consensus 188 ~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi~P-d~d~~ty~~LIe~lv~~~~~~ 266 (670)
. .+..+... +...|..++|..+++..... .| +. ...+.. +...+...
T Consensus 148 ~----~~~~la~~---------------------~~~~~~~~~A~~~~~~~~~~--~~~~~-~~~~~~----~~~~~~~~ 195 (225)
T 2vq2_A 148 P----AFKELART---------------------KMLAGQLGDADYYFKKYQSR--VEVLQ-ADDLLL----GWKIAKAL 195 (225)
T ss_dssp H----HHHHHHHH---------------------HHHHTCHHHHHHHHHHHHHH--HCSCC-HHHHHH----HHHHHHHT
T ss_pred h----HHHHHHHH---------------------HHHcCCHHHHHHHHHHHHHh--CCCCC-HHHHHH----HHHHHHhc
Confidence 1 13333222 35567889999999887653 23 22 133433 33677889
Q ss_pred CCHHHHHHHHHHHHHC
Q 005912 267 DGKKYHRKLLRTLQNE 282 (670)
Q Consensus 267 G~~e~A~~Lf~~M~~~ 282 (670)
|+.+.|..+++.+...
T Consensus 196 ~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 196 GNAQAAYEYEAQLQAN 211 (225)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHh
Confidence 9999999999998754
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=2.2e-06 Score=85.22 Aligned_cols=225 Identities=10% Similarity=-0.086 Sum_probs=162.2
Q ss_pred HhcCChHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 6 CKAGDHSNALEIAYEMEAAGRM---ATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 6 ~k~G~~~~Al~lf~~M~~~Gv~---Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
...|++++|+..|+++.+.... .+..+|..+-..|...|++++|...|++... . -..+..+|..+-..|.+.|
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~-~~~~~~~~~~la~~~~~~~- 91 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA--I-RPDMPEVFNYLGIYLTQAG- 91 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H-CCCCHHHHHHHHHHHHHTT-
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHH--c-CCCcHHHHHHHHHHHHHcc-
Confidence 3568899999999999876421 1467888999999999999999999999873 1 1346889999999999999
Q ss_pred cccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALC 161 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~ 161 (670)
+.++|+..|.+.... .| +..+|..+..+|.+.|++++|...|..+.+...... .+..++..+.
T Consensus 92 --~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~----------~~~~~~~~~~ 155 (275)
T 1xnf_A 92 --NFDAAYEAFDSVLEL----DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP----------FRSLWLYLAE 155 (275)
T ss_dssp --CHHHHHHHHHHHHHH----CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHhc----CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh----------HHHHHHHHHH
Confidence 889999999999872 34 578899999999999999999999999987532211 3444555667
Q ss_pred HcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccC
Q 005912 162 REGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKT 241 (670)
Q Consensus 162 k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~ 241 (670)
+.|++++|...|........ ++... +. +... +...+..+++...+......
T Consensus 156 ~~~~~~~A~~~~~~~~~~~~---~~~~~----~~-~~~~---------------------~~~~~~~~~a~~~~~~~~~~ 206 (275)
T 1xnf_A 156 QKLDEKQAKEVLKQHFEKSD---KEQWG----WN-IVEF---------------------YLGNISEQTLMERLKADATD 206 (275)
T ss_dssp HHHCHHHHHHHHHHHHHHSC---CCSTH----HH-HHHH---------------------HTTSSCHHHHHHHHHHHCCS
T ss_pred HhcCHHHHHHHHHHHHhcCC---cchHH----HH-HHHH---------------------HHHhcCHHHHHHHHHHHhcc
Confidence 78999999999987776542 22211 11 1111 23344556777777776543
Q ss_pred CCCCCc-ccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005912 242 PLDPDA-VGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEG 283 (670)
Q Consensus 242 gi~Pd~-d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~g 283 (670)
.....+ +..+|. .+...|.+.|+.++|...|+......
T Consensus 207 ~~~~~~~~~~~~~----~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 207 NTSLAEHLSETNF----YLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccccccccHHHH----HHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 210000 013333 34478889999999999999988654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=1.6e-06 Score=84.57 Aligned_cols=190 Identities=11% Similarity=0.057 Sum_probs=140.3
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCc
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESY 83 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~ 83 (670)
.|.+.|++++|+.+|++.... ...+...+..+...|.+.|++++|...|++... . ...+..+|..+...|.+.|
T Consensus 32 ~~~~~~~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~~~~la~~~~~~~-- 105 (243)
T 2q7f_A 32 RGSEFGDYEKAAEAFTKAIEE-NKEDAIPYINFANLLSSVNELERALAFYDKALE--L-DSSAATAYYGAGNVYVVKE-- 105 (243)
T ss_dssp ----------CCTTHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHTT--
T ss_pred HHHHhhCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--c-CCcchHHHHHHHHHHHHhc--
Confidence 567889999999999998864 334688889999999999999999999999873 1 1346888999999999999
Q ss_pred ccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHc
Q 005912 84 DRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCRE 163 (670)
Q Consensus 84 ~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~ 163 (670)
+.++|+.+|.+..+ . ...+..+|..+...|.+.|++++|..++..+.+.... .+..+..+...|.+.
T Consensus 106 -~~~~A~~~~~~~~~--~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~ 172 (243)
T 2q7f_A 106 -MYKEAKDMFEKALR--A-GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN---------DTEARFQFGMCLANE 172 (243)
T ss_dssp -CHHHHHHHHHHHHH--H-TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHH--h-CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc---------cHHHHHHHHHHHHHc
Confidence 78899999999876 2 2346778889999999999999999999998875321 122788899999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhcc
Q 005912 164 GRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGK 240 (670)
Q Consensus 164 G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~ 240 (670)
|++++|...|+...+... .+.. .+..+.. .+...|..++|..+|+...+
T Consensus 173 ~~~~~A~~~~~~~~~~~~---~~~~----~~~~la~---------------------~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 173 GMLDEALSQFAAVTEQDP---GHAD----AFYNAGV---------------------TYAYKENREKALEMLDKAID 221 (243)
T ss_dssp TCCHHHHHHHHHHHHHCT---TCHH----HHHHHHH---------------------HHHHTTCTTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCc---ccHH----HHHHHHH---------------------HHHHccCHHHHHHHHHHHHc
Confidence 999999999999877642 1211 1333222 23566788889988888765
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.61 E-value=3.6e-07 Score=92.46 Aligned_cols=169 Identities=9% Similarity=-0.001 Sum_probs=127.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCC-----CCCCCCHHHH
Q 005912 3 AEDCKAGDHSNALEIAYEMEAA-------GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE-----DYMKPDTETY 70 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~-------Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~-----~gi~Pd~~ty 70 (670)
..|...|++++|+.+|++..+. .......+++.+-..|...|++++|..+|++..... ........+|
T Consensus 35 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 114 (311)
T 3nf1_A 35 IQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATL 114 (311)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 5678899999999999998763 233356678889999999999999999999876300 1112346788
Q ss_pred HHHHHHHHHcCCcccHHHHHHHHHHhHhccC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCccccc
Q 005912 71 NCVIQAYTRAESYDRVQDVAELLGMMVEDHK----RLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHN 145 (670)
Q Consensus 71 n~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~----gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~ 145 (670)
+.+...|...| +.++|+.+|.+...... +-.| ...+|..+...|...|++++|.++|.......... .
T Consensus 115 ~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~-- 187 (311)
T 3nf1_A 115 NNLAVLYGKRG---KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK--L-- 187 (311)
T ss_dssp HHHHHHHHTTT---CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT--S--
T ss_pred HHHHHHHHHcC---cHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH--h--
Confidence 99999999999 78899999988765200 2223 34668888899999999999999999987641000 0
Q ss_pred CCCCch---HHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005912 146 EGNFGD---PLSLYLRALCREGRIIELLEALEAMAK 178 (670)
Q Consensus 146 ~g~~pd---tyn~LI~ay~k~G~~eeA~~vf~~M~~ 178 (670)
.+..|. +++.+...|.+.|++++|...|++..+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 000111 788999999999999999999998875
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=98.55 E-value=2.8e-06 Score=78.52 Aligned_cols=159 Identities=16% Similarity=0.079 Sum_probs=131.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
..|...|++++|+..|+++... ...+...+..+...|...|++++|..+|++... . ...+...|..+...|...|
T Consensus 16 ~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~~~~~a~~~~~~~- 90 (186)
T 3as5_A 16 ISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLA--D-APDNVKVATVLGLTYVQVQ- 90 (186)
T ss_dssp HHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHHT-
T ss_pred HHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHh--c-CCCCHHHHHHHHHHHHHhc-
Confidence 4577889999999999888754 234688899999999999999999999999873 1 1346788999999999999
Q ss_pred cccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCR 162 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k 162 (670)
+.++|...|.+... . ...+...+..+..+|.+.|++++|..++....+..... +.+|..+...|.+
T Consensus 91 --~~~~A~~~~~~~~~--~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~la~~~~~ 156 (186)
T 3as5_A 91 --KYDLAVPLLIKVAE--A-NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE---------GKVHRAIAFSYEQ 156 (186)
T ss_dssp --CHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHh--c-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc---------hHHHHHHHHHHHH
Confidence 78899999999876 2 23467888899999999999999999999988753211 2278999999999
Q ss_pred cCCHHHHHHHHHHHhhCC
Q 005912 163 EGRIIELLEALEAMAKDN 180 (670)
Q Consensus 163 ~G~~eeA~~vf~~M~~~g 180 (670)
.|++++|...|+...+..
T Consensus 157 ~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 157 MGRHEEALPHFKKANELD 174 (186)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcC
Confidence 999999999999876643
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=2.8e-05 Score=78.09 Aligned_cols=216 Identities=8% Similarity=-0.067 Sum_probs=167.5
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHH
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQAT----CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 79 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak----~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k 79 (670)
.|.+.|++++|+..|++..+. -+...+..|-..|.. .+++++|...|++... .+ +...|..|-..|.+
T Consensus 15 ~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~--~~---~~~a~~~lg~~~~~ 86 (273)
T 1ouv_A 15 KSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD--LN---YSNGCHLLGNLYYS 86 (273)
T ss_dssp HHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TT---CHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHH--CC---CHHHHHHHHHHHhC
Confidence 467789999999999998873 356778888889999 9999999999999873 33 78889999999998
Q ss_pred ----cCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHccCCCcccccCCCCch
Q 005912 80 ----AESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK----YCAVTEAIRHFRALQNYEGGTKVLHNEGNFGD 151 (670)
Q Consensus 80 ----~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak----~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pd 151 (670)
.+ +.++|+..|.+... .+ +..++..+-..|.+ .+++++|...|....+.+. +.
T Consensus 87 g~~~~~---~~~~A~~~~~~a~~--~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~-----------~~ 147 (273)
T 1ouv_A 87 GQGVSQ---NTNKALQYYSKACD--LK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLND-----------GD 147 (273)
T ss_dssp TSSSCC---CHHHHHHHHHHHHH--TT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC-----------HH
T ss_pred CCCccc---CHHHHHHHHHHHHH--cC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCc-----------HH
Confidence 88 78999999999887 43 77888889899999 9999999999999887541 22
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHc---
Q 005912 152 PLSLYLRALCR----EGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISE--- 224 (670)
Q Consensus 152 tyn~LI~ay~k----~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~--- 224 (670)
++..+-..|.+ .+++++|...|+...+.+. +.. +..+-.. +..
T Consensus 148 a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~---~~a------~~~lg~~---------------------~~~g~~ 197 (273)
T 1ouv_A 148 GCTILGSLYDAGRGTPKDLKKALASYDKACDLKD---SPG------CFNAGNM---------------------YHHGEG 197 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHH------HHHHHHH---------------------HHHTCS
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC---HHH------HHHHHHH---------------------HHcCCC
Confidence 67778888888 8999999999999887652 221 2222221 234
Q ss_pred -CCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC
Q 005912 225 -GGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCL----EDGKKYHRKLLRTLQNEGPA 285 (670)
Q Consensus 225 -~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~----~G~~e~A~~Lf~~M~~~gv~ 285 (670)
.+..++|..+|+...+.+ | . ..+.. +...|.+ .++.++|...|+.....+..
T Consensus 198 ~~~~~~~A~~~~~~a~~~~--~-~--~a~~~----l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 198 ATKNFKEALARYSKACELE--N-G--GGCFN----LGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTT--C-H--HHHHH----HHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred CCccHHHHHHHHHHHHhCC--C-H--HHHHH----HHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 678999999998887653 2 2 33332 3356666 89999999999998877643
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=1.9e-06 Score=85.81 Aligned_cols=218 Identities=13% Similarity=-0.092 Sum_probs=156.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
..|...|++++|+..|++..... ..+..+|..+-..|...|++++|...|++... . ...+..+|..+...|.+.|
T Consensus 51 ~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~-~~~~~~~~~~la~~~~~~g- 125 (275)
T 1xnf_A 51 VLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--L-DPTYNYAHLNRGIALYYGG- 125 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H-CTTCTHHHHHHHHHHHHTT-
T ss_pred HHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHh--c-CccccHHHHHHHHHHHHhc-
Confidence 46788999999999999988753 34688999999999999999999999999873 1 1235789999999999999
Q ss_pred cccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCR 162 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k 162 (670)
+.++|+..|.++.. +.|+...+...+..+...|++++|..++.......... .. .++ ++..+..
T Consensus 126 --~~~~A~~~~~~a~~----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~--------~~~-~~~~~~~ 189 (275)
T 1xnf_A 126 --RDKLAQDDLLAFYQ----DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE-QW--------GWN-IVEFYLG 189 (275)
T ss_dssp --CHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCC-ST--------HHH-HHHHHTT
T ss_pred --cHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc-hH--------HHH-HHHHHHH
Confidence 88999999999987 35666666666677788899999999998877643221 11 344 7777888
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCchHH-HHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccC
Q 005912 163 EGRIIELLEALEAMAKDNQPVPPRAMI-LSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKT 241 (670)
Q Consensus 163 ~G~~eeA~~vf~~M~~~gi~i~p~~~i-~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~ 241 (670)
.++.++|...+....... |.... ....+..+ ...+...|..++|...|+.....
T Consensus 190 ~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~~~l---------------------a~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 190 NISEQTLMERLKADATDN----TSLAEHLSETNFYL---------------------GKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp SSCHHHHHHHHHHHCCSH----HHHHHHHHHHHHHH---------------------HHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHHhccc----ccccccccHHHHHH---------------------HHHHHHcCCHHHHHHHHHHHHhC
Confidence 889999999999885543 21100 00112222 23346778999999999998764
Q ss_pred CCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHH
Q 005912 242 PLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLL 276 (670)
Q Consensus 242 gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf 276 (670)
.|+. ...+ ...+...|++++|+.-+
T Consensus 245 --~p~~-~~~~-------~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 245 --NVHN-FVEH-------RYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CCTT-CHHH-------HHHHHHHHHHHHC----
T ss_pred --Cchh-HHHH-------HHHHHHHHHHHhhHHHH
Confidence 2532 1222 13456677777776655
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.1e-05 Score=79.07 Aligned_cols=224 Identities=8% Similarity=-0.040 Sum_probs=147.8
Q ss_pred HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccC
Q 005912 67 TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNE 146 (670)
Q Consensus 67 ~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~ 146 (670)
...|..+-..|.+.| +.++|+.+|.+... .. .+..+|..+..+|...|++++|...|............. .
T Consensus 5 a~~~~~~g~~~~~~~---~~~~A~~~~~~a~~--~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--~ 75 (258)
T 3uq3_A 5 ADKEKAEGNKFYKAR---QFDEAIEHYNKAWE--LH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRAD--Y 75 (258)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHH--HS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC--H
T ss_pred HHHHHHHHHHHHHhc---cHHHHHHHHHHHHH--hh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccc--h
Confidence 456788888889999 78899999999887 44 778899999999999999999999999887643211000 0
Q ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCC
Q 005912 147 GNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGG 226 (670)
Q Consensus 147 g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g 226 (670)
...+.+|..+-..|.+.|++++|...|+...+.. |+..+ + ...|
T Consensus 76 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~----~----------------------------~~~~ 119 (258)
T 3uq3_A 76 KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH----RTADI----L----------------------------TKLR 119 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CCHHH----H----------------------------HHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC----chhHH----H----------------------------HHHh
Confidence 0001278999999999999999999999988754 32211 1 1223
Q ss_pred cHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHcc
Q 005912 227 LTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLI 306 (670)
Q Consensus 227 ~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~ 306 (670)
..+++...++..... .|+. ...|. .+...|...|+.++|...|+......-. +...+..+-..+.
T Consensus 120 ~~~~a~~~~~~~~~~--~~~~-~~~~~----~~~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~l~~~~~--- 184 (258)
T 3uq3_A 120 NAEKELKKAEAEAYV--NPEK-AEEAR----LEGKEYFTKSDWPNAVKAYTEMIKRAPE-----DARGYSNRAAALA--- 184 (258)
T ss_dssp HHHHHHHHHHHHHHC--CHHH-HHHHH----HHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHc--Ccch-HHHHH----HHHHHHHHhcCHHHHHHHHHHHHhcCcc-----cHHHHHHHHHHHH---
Confidence 445555555555432 1211 12222 2336677788888888888877664322 3333333333333
Q ss_pred CCCcccccccccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCChhhhhc
Q 005912 307 KGPEQHVLKPKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRG 360 (670)
Q Consensus 307 ~~p~~~~L~~~~g~~~~A~~l~~~M~~~Gip~d~t~~~Ll~a~~~aG~~~eA~~ 360 (670)
..|.+++|...+++.....-....+|..+-..+...|+.++|..
T Consensus 185 ----------~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 185 ----------KLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp ----------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ----------HhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34557888888887766543334677777778888888887764
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=4.5e-06 Score=81.37 Aligned_cols=159 Identities=12% Similarity=0.044 Sum_probs=134.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
..|.+.|++++|+..|++..... ..+...+..+...|...|++++|..+|+++.. . ...+...|..+...|.+.|
T Consensus 65 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~~~~~a~~~~~~~- 139 (243)
T 2q7f_A 65 NLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALR--A-GMENGDLFYMLGTVLVKLE- 139 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H-TCCSHHHHHHHHHHHHHTS-
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHH--h-CCCCHHHHHHHHHHHHHhc-
Confidence 46788999999999999988753 34788899999999999999999999999873 1 1346788999999999999
Q ss_pred cccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCR 162 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k 162 (670)
+.++|+.+|.+... . ...+...+..+...|.+.|++++|...|..+.+.... .+.+|..+...|.+
T Consensus 140 --~~~~A~~~~~~~~~--~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~la~~~~~ 205 (243)
T 2q7f_A 140 --QPKLALPYLQRAVE--L-NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG---------HADAFYNAGVTYAY 205 (243)
T ss_dssp --CHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHH--h-CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---------cHHHHHHHHHHHHH
Confidence 88999999999876 2 2246788999999999999999999999998875321 12278999999999
Q ss_pred cCCHHHHHHHHHHHhhCC
Q 005912 163 EGRIIELLEALEAMAKDN 180 (670)
Q Consensus 163 ~G~~eeA~~vf~~M~~~g 180 (670)
.|++++|...|+...+..
T Consensus 206 ~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 206 KENREKALEMLDKAIDIQ 223 (243)
T ss_dssp TTCTTHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHccC
Confidence 999999999999988764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.50 E-value=1.9e-05 Score=81.55 Aligned_cols=220 Identities=8% Similarity=-0.050 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-------HcCCh-------HHHHHHHHHchhCCCCCCC-CHHHHHHHHHH
Q 005912 12 SNALEIAYEMEAAGRMATTFHFNHLLSCQA-------TCGIP-------EVAFATFENMEYGEDYMKP-DTETYNCVIQA 76 (670)
Q Consensus 12 ~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~ya-------k~G~~-------e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~a 76 (670)
++|+.+|++.... ..-+...|..+...+. +.|++ ++|..+|++.. . .+.| +...|..+...
T Consensus 33 ~~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl--~-~~~p~~~~~~~~~~~~ 108 (308)
T 2ond_A 33 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAI--S-TLLKKNMLLYFAYADY 108 (308)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHH--T-TTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHH--H-HhCcccHHHHHHHHHH
Confidence 6888999988764 2346778888877776 35886 99999999988 2 2245 56689999999
Q ss_pred HHHcCCcccHHHHHHHHHHhHhccCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHH
Q 005912 77 YTRAESYDRVQDVAELLGMMVEDHKRLQPNV--KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLS 154 (670)
Q Consensus 77 y~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~--~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn 154 (670)
+.+.| +.++|..+|++..+ +.|+. .+|..+...+.+.|++++|..+|....+..... +..|.
T Consensus 109 ~~~~~---~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~---------~~~~~ 172 (308)
T 2ond_A 109 EESRM---KYEKVHSIYNRLLA----IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR---------HHVYV 172 (308)
T ss_dssp HHHTT---CHHHHHHHHHHHHT----SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC---------THHHH
T ss_pred HHhcC---CHHHHHHHHHHHHh----ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---------HHHHH
Confidence 99999 88999999999986 45643 379999999999999999999999998753221 11454
Q ss_pred HHHHHHH-HcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHH
Q 005912 155 LYLRALC-REGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKR 233 (670)
Q Consensus 155 ~LI~ay~-k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~ 233 (670)
....... ..|+.++|..+|+...+.. |+..- .+..++. ++...|..++|+.
T Consensus 173 ~~a~~~~~~~~~~~~A~~~~~~al~~~----p~~~~---~~~~~~~---------------------~~~~~g~~~~A~~ 224 (308)
T 2ond_A 173 TAALMEYYCSKDKSVAFKIFELGLKKY----GDIPE---YVLAYID---------------------YLSHLNEDNNTRV 224 (308)
T ss_dssp HHHHHHHHTSCCHHHHHHHHHHHHHHH----TTCHH---HHHHHHH---------------------HHHTTCCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC----CCcHH---HHHHHHH---------------------HHHHCCCHHHHHH
Confidence 4433322 3699999999999887753 22211 1333332 2366789999999
Q ss_pred HHHHhccC-CCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005912 234 WVPRRGKT-PLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEG 283 (670)
Q Consensus 234 lf~~m~~~-gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~g 283 (670)
+|+..... .+.|+.....|..++ ..+.+.|+.+.|..+++.+....
T Consensus 225 ~~~~al~~~~l~p~~~~~l~~~~~----~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 225 LFERVLTSGSLPPEKSGEIWARFL----AFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHSSSSCGGGCHHHHHHHH----HHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhccCCCHHHHHHHHHHHH----HHHHHcCCHHHHHHHHHHHHHHc
Confidence 99998775 345543234454444 66678899999999999887653
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.49 E-value=7.6e-06 Score=80.25 Aligned_cols=156 Identities=13% Similarity=0.050 Sum_probs=132.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHc-
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRA- 80 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~- 80 (670)
..+.+.|++++|+..|++..+. -+.+...|..+-..|.+.|++++|...|++... +.| +...|..+-..|.+.
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~----~~P~~~~a~~~lg~~~~~~~ 87 (217)
T 2pl2_A 13 VQLYALGRYDAALTLFERALKE-NPQDPEALYWLARTQLKLGLVNPALENGKTLVA----RTPRYLGGYMVLSEAYVALY 87 (217)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT-SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHhh
Confidence 3577899999999999998864 234678889999999999999999999999773 234 577899999999999
Q ss_pred ----------CCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCC
Q 005912 81 ----------ESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNF 149 (670)
Q Consensus 81 ----------g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~ 149 (670)
| +.++|+..|.+..+ +.| +...|..+-.+|...|++++|...|+...+.. . .
T Consensus 88 ~~~~~~~~~~g---~~~~A~~~~~~al~----~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~--------~ 150 (217)
T 2pl2_A 88 RQAEDRERGKG---YLEQALSVLKDAER----VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--D--------T 150 (217)
T ss_dssp HTCSSHHHHHH---HHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C--------C
T ss_pred hhhhhhccccc---CHHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--c--------c
Confidence 9 89999999999877 346 46788888899999999999999999998854 1 2
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 150 GDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 150 pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
+..+..+-..|...|++++|...|+...+..
T Consensus 151 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 181 (217)
T 2pl2_A 151 PEIRSALAELYLSMGRLDEALAQYAKALEQA 181 (217)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3378999999999999999999999988764
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.46 E-value=7.2e-06 Score=86.19 Aligned_cols=306 Identities=8% Similarity=-0.079 Sum_probs=192.8
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHchhC--CCCCCC-CHHHHHHHHHH
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMAT----TFHFNHLLSCQATCGIPEVAFATFENMEYG--EDYMKP-DTETYNCVIQA 76 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd----~~tyn~LI~~yak~G~~e~A~~lf~~M~~~--~~gi~P-d~~tyn~LI~a 76 (670)
.+.+.|++++|+.+|++....+- .+ ...|..+-..|...|++++|...|++.... ..+-.| ...+|..+-..
T Consensus 18 ~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 96 (406)
T 3sf4_A 18 RLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNT 96 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 56788999999999999887632 23 357888889999999999999999886420 111122 25678888899
Q ss_pred HHHcCCcccHHHHHHHHHHhHhccCCCCCC----HHHHHHHHHHHHHcCC--------------------HHHHHHHHHH
Q 005912 77 YTRAESYDRVQDVAELLGMMVEDHKRLQPN----VKTYALLVECFTKYCA--------------------VTEAIRHFRA 132 (670)
Q Consensus 77 y~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd----~~Ty~~LL~a~ak~g~--------------------~d~A~~lf~~ 132 (670)
|...| +.++|+..|.+....... .++ ..+|..+-..|...|+ ++.|...+..
T Consensus 97 ~~~~g---~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 172 (406)
T 3sf4_A 97 LKVLG---NFDEAIVCCQRHLDISRE-LNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEE 172 (406)
T ss_dssp HHHTT---CHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHcC---CHHHHHHHHHHHHHHHHh-cccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 99999 788899888877541000 122 4578888899999999 9999999987
Q ss_pred HHHccCCCcccccCCCCch---HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHH
Q 005912 133 LQNYEGGTKVLHNEGNFGD---PLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEA 209 (670)
Q Consensus 133 M~~~g~~~~v~~~~g~~pd---tyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~ 209 (670)
....... .+..+. +|+.+-..|...|++++|...|++..+.... .++.......+..+.
T Consensus 173 al~~~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la----------- 234 (406)
T 3sf4_A 173 NLSLVTA------LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE-FGDKAAERRAYSNLG----------- 234 (406)
T ss_dssp HHHHHHH------TTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHH-----------
T ss_pred HHHHHHh------ccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHH-----------
Confidence 6642100 011111 7888999999999999999999987653211 122111111222222
Q ss_pred HcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCC-CCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccC
Q 005912 210 ELGYEIDYIARYISEGGLTGERKRWVPRRGKTP-LDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLG 288 (670)
Q Consensus 210 ~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~g-i~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g 288 (670)
..+...|..++|..+++...... -.++. .........+...|.+.|++++|..+|.......-..
T Consensus 235 ----------~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-- 300 (406)
T 3sf4_A 235 ----------NAYIFLGEFETASEYYKKTLLLARQLKDR--AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL-- 300 (406)
T ss_dssp ----------HHHHHTTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--
T ss_pred ----------HHHHHcCChHHHHHHHHHHHHHHHhCcCc--hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc--
Confidence 22356678888888887764310 00111 1111222345588899999999999998876532210
Q ss_pred CCCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHHh----CCCCCH--HHHHHHHHHHHHhCChh
Q 005912 289 DVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDA----QGLPTD--GTRNVLYQRVQKARRIN 356 (670)
Q Consensus 289 ~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~----~Gip~d--~t~~~Ll~a~~~aG~~~ 356 (670)
.+......+...+...- ...|..++|..++++... .|-++. .++..+-..+...|+..
T Consensus 301 -~~~~~~~~~~~~la~~~---------~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 301 -NDRIGEGRACWSLGNAY---------TALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp -TCHHHHHHHHHHHHHHH---------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred -CCcHHHHHHHHHHHHHH---------HHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 11111112221221110 145678899888877543 344222 56777777777777664
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.46 E-value=7e-06 Score=83.12 Aligned_cols=283 Identities=8% Similarity=-0.081 Sum_probs=177.7
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHchhC--CCCC-CCCHHHHHHHHH
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMAT-----TFHFNHLLSCQATCGIPEVAFATFENMEYG--EDYM-KPDTETYNCVIQ 75 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd-----~~tyn~LI~~yak~G~~e~A~~lf~~M~~~--~~gi-~Pd~~tyn~LI~ 75 (670)
.+.+.|++++|+.+|++..+.. |+ ...|+.+-..|...|++++|...|++.... ..+- .....+|..+-.
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 91 (338)
T 3ro2_A 14 RLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 91 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 5678999999999999988763 33 467888999999999999999999886520 1111 123567888999
Q ss_pred HHHHcCCcccHHHHHHHHHHhHhccCCCCCC----HHHHHHHHHHHHHcCC--------------------HHHHHHHHH
Q 005912 76 AYTRAESYDRVQDVAELLGMMVEDHKRLQPN----VKTYALLVECFTKYCA--------------------VTEAIRHFR 131 (670)
Q Consensus 76 ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd----~~Ty~~LL~a~ak~g~--------------------~d~A~~lf~ 131 (670)
.|...| +.++|+..|.+....... .++ ..+|..+-..|...|+ ++.|.+.+.
T Consensus 92 ~~~~~g---~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 92 TLKVLG---NFDEAIVCCQRHLDISRE-LNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHcc---CHHHHHHHHHHHHHHHHH-hcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999999 788888888876541011 122 3478888899999999 999999998
Q ss_pred HHHHccCCCcccccCCCCc---hHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHH
Q 005912 132 ALQNYEGGTKVLHNEGNFG---DPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEE 208 (670)
Q Consensus 132 ~M~~~g~~~~v~~~~g~~p---dtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m 208 (670)
........ .+..+ .++..+-..|...|++++|...|+...+.... .++.......+..+.
T Consensus 168 ~a~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~l~---------- 230 (338)
T 3ro2_A 168 ENLSLVTA------LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE-FGDKAAERRAYSNLG---------- 230 (338)
T ss_dssp HHHHHHHH------HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHH----------
T ss_pred HHHHHHHh------cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHH----------
Confidence 76542100 00001 17888899999999999999999987543211 111111111122222
Q ss_pred HHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCC-CCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc
Q 005912 209 AELGYEIDYIARYISEGGLTGERKRWVPRRGKTP-LDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVL 287 (670)
Q Consensus 209 ~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~g-i~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~ 287 (670)
..+...|..++|..+++...... -.++. .........+...|...|+.++|...|+......-..
T Consensus 231 -----------~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~- 296 (338)
T 3ro2_A 231 -----------NAYIFLGEFETASEYYKKTLLLARQLKDR--AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL- 296 (338)
T ss_dssp -----------HHHHHHTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-
T ss_pred -----------HHHHHcCCHHHHHHHHHHHHHHHHhhcch--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc-
Confidence 22345567888888877654210 00111 1111222335578899999999999998876542210
Q ss_pred CCCCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHHhC
Q 005912 288 GDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQ 334 (670)
Q Consensus 288 g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~ 334 (670)
.+......+...+...- ...|..++|..++++....
T Consensus 297 --~~~~~~~~~~~~la~~~---------~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 297 --KDRIGEGRACWSLGNAY---------TALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp --TCHHHHHHHHHHHHHHH---------HHHTCHHHHHHHHHHHHHC
T ss_pred --CCcHHHHHHHHHHHHHH---------HHcCChHHHHHHHHHHHHH
Confidence 11111111111121110 2556788999998887653
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.9e-05 Score=78.51 Aligned_cols=238 Identities=9% Similarity=0.007 Sum_probs=156.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC--HHHHHHHHHHHHHc
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD--TETYNCVIQAYTRA 80 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd--~~tyn~LI~ay~k~ 80 (670)
..|.+.|++++|+.+|++..+.. +-+...+..+...|.+.|++++|...|++.. ..+-.|+ ..+|..+-..|.+.
T Consensus 11 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 11 DFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYF--SKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHH--TTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH--hccCchhHHHHHHHHHHHHHHHc
Confidence 45778999999999999988752 2244578888889999999999999999998 4322222 45589999999999
Q ss_pred CCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHH
Q 005912 81 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRAL 160 (670)
Q Consensus 81 g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay 160 (670)
| +.++|+..|.+.... . .-+..+|..+-..|...|++++|...|....+.... .+.+|..+-..+
T Consensus 88 ~---~~~~A~~~~~~a~~~--~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~---------~~~~~~~l~~~~ 152 (272)
T 3u4t_A 88 G---QDSLAIQQYQAAVDR--D-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT---------DPKVFYELGQAY 152 (272)
T ss_dssp T---CHHHHHHHHHHHHHH--S-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC---------CHHHHHHHHHHH
T ss_pred c---cHHHHHHHHHHHHhc--C-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC---------cHHHHHHHHHHH
Confidence 9 789999999998772 1 224578999999999999999999999988764211 112566666234
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhcc
Q 005912 161 CREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGK 240 (670)
Q Consensus 161 ~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~ 240 (670)
...+++++|...|+...+.. |+... .+..+...+. .+ ......+.|...++....
T Consensus 153 ~~~~~~~~A~~~~~~a~~~~----p~~~~---~~~~~~~~~~----~~--------------~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 153 YYNKEYVKADSSFVKVLELK----PNIYI---GYLWRARANA----AQ--------------DPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS----TTCHH---HHHHHHHHHH----HH--------------STTCSSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhC----ccchH---HHHHHHHHHH----Hc--------------CcchhhHHHHHHHHHHHH
Confidence 44569999999999988764 32211 1222222110 00 010113334444443322
Q ss_pred C-CCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005912 241 T-PLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEG 283 (670)
Q Consensus 241 ~-gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~g 283 (670)
. .-.|+.+..........+...|.+.|+.++|...|+......
T Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD 251 (272)
T ss_dssp HHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 1 111221100011111234477889999999999999988654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.5e-05 Score=78.04 Aligned_cols=198 Identities=12% Similarity=-0.003 Sum_probs=139.4
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-
Q 005912 27 MATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP- 105 (670)
Q Consensus 27 ~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P- 105 (670)
+++...+..+-..|.+.|++++|...|++... . -..+...|..+-..|.+.| +.++|+..|.+..+ +.|
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~-~p~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~----~~P~ 71 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALK--E-NPQDPEALYWLARTQLKLG---LVNPALENGKTLVA----RTPR 71 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHT--T-SSSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HCTT
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h-CCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH----hCCC
Confidence 35667788888999999999999999999872 1 1346788999999999999 88999999999887 345
Q ss_pred CHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHH
Q 005912 106 NVKTYALLVECFTKY-----------CAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALE 174 (670)
Q Consensus 106 d~~Ty~~LL~a~ak~-----------g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~ 174 (670)
+...|..+-.+|.+. |++++|...|+...+..+.. +.+|..+=..|...|++++|...|+
T Consensus 72 ~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~---------~~~~~~lg~~~~~~g~~~~A~~~~~ 142 (217)
T 2pl2_A 72 YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY---------APLHLQRGLVYALLGERDKAEASLK 142 (217)
T ss_dssp CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc---------HHHHHHHHHHHHHcCChHHHHHHHH
Confidence 467888888999999 99999999999988753221 1278888899999999999999999
Q ss_pred HHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhh
Q 005912 175 AMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSN 254 (670)
Q Consensus 175 ~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~ 254 (670)
+..+.+ . .+.. +..+... +...|..++|...|+..... .|+. ...+.
T Consensus 143 ~al~~~-~-~~~~------~~~la~~---------------------~~~~g~~~~A~~~~~~al~~--~P~~-~~~~~- 189 (217)
T 2pl2_A 143 QALALE-D-TPEI------RSALAEL---------------------YLSMGRLDEALAQYAKALEQ--APKD-LDLRV- 189 (217)
T ss_dssp HHHHHC-C-CHHH------HHHHHHH---------------------HHHHTCHHHHHHHHHHHHHH--STTC-HHHHH-
T ss_pred HHHhcc-c-chHH------HHHHHHH---------------------HHHcCCHHHHHHHHHHHHHh--CCCC-hHHHH-
Confidence 987765 2 3322 3333332 35668899999999988653 2543 12333
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHH
Q 005912 255 PMETSFKQRCLEDGKKYHRKLLRTL 279 (670)
Q Consensus 255 LIe~lv~~~~~~G~~e~A~~Lf~~M 279 (670)
.+...+.+.|+.++|...|+..
T Consensus 190 ---~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 190 ---RYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp ---HHHHHHTC--------------
T ss_pred ---HHHHHHHHccCHHHHHHHHHHH
Confidence 2447789999999999988764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=98.37 E-value=4e-05 Score=71.91 Aligned_cols=159 Identities=14% Similarity=0.089 Sum_probs=129.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
..|.+.|++++|+..|++..+.. +-+...|..+-..|.+.|++++|...|..... ...-+...|..+-..+...+
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~- 87 (184)
T 3vtx_A 13 DKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVV---LDTTSAEAYYILGSANFMID- 87 (184)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHTT-
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCchhHHHHHHHHHHHHHcC-
Confidence 35778999999999999987652 23678899999999999999999999998863 11345677888888888888
Q ss_pred cccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCR 162 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k 162 (670)
+.+.|...+.+.... ..-+..++..+-.+|.+.|++++|.+.|+...+..+. .+.+|..+-..|.+
T Consensus 88 --~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~---------~~~~~~~lg~~~~~ 153 (184)
T 3vtx_A 88 --EKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG---------FIRAYQSIGLAYEG 153 (184)
T ss_dssp --CHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch---------hhhHHHHHHHHHHH
Confidence 788999999888762 2235778888999999999999999999998875322 12278999999999
Q ss_pred cCCHHHHHHHHHHHhhCC
Q 005912 163 EGRIIELLEALEAMAKDN 180 (670)
Q Consensus 163 ~G~~eeA~~vf~~M~~~g 180 (670)
.|++++|...|++..+.+
T Consensus 154 ~g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 154 KGLRDEAVKYFKKALEKE 171 (184)
T ss_dssp TTCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHhCC
Confidence 999999999999887653
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.36 E-value=7.1e-06 Score=87.09 Aligned_cols=285 Identities=9% Similarity=-0.062 Sum_probs=180.9
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC-H----HHHHHHHHHHHHcCChHHHHHHHHHchhC--CCC-CCCCHHHHHHHHH
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMAT-T----FHFNHLLSCQATCGIPEVAFATFENMEYG--EDY-MKPDTETYNCVIQ 75 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd-~----~tyn~LI~~yak~G~~e~A~~lf~~M~~~--~~g-i~Pd~~tyn~LI~ 75 (670)
.|...|++++|+.+|++..+.+ |+ . ..|..+-..|...|++++|...|++.... ..+ ......+|+.+-.
T Consensus 57 ~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 134 (411)
T 4a1s_A 57 RLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGN 134 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHH
Confidence 5678899999999999988763 33 2 47888889999999999999999887520 011 1234577888999
Q ss_pred HHHHcCCcccHHHHHHHHHHhHhcc--CC-CCCCHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHH
Q 005912 76 AYTRAESYDRVQDVAELLGMMVEDH--KR-LQPNVKTYALLVECFTKYCA-----------------VTEAIRHFRALQN 135 (670)
Q Consensus 76 ay~k~g~~~~~~eAl~lf~eM~~~~--~g-i~Pd~~Ty~~LL~a~ak~g~-----------------~d~A~~lf~~M~~ 135 (670)
.|...| +.++|+..|.+..... .+ ......+|..+-..|...|+ ++.|.+.+.....
T Consensus 135 ~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 135 TLKVMG---RFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 999999 7888888888765410 01 11134578888899999999 9999999988664
Q ss_pred ccCCCcccccCCCCc---hHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcC
Q 005912 136 YEGGTKVLHNEGNFG---DPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELG 212 (670)
Q Consensus 136 ~g~~~~v~~~~g~~p---dtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G 212 (670)
.... .+..+ .+|..+-..|...|++++|...|++..+.... ..+.......+..+
T Consensus 212 ~~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~l--------------- 269 (411)
T 4a1s_A 212 LMRD------LGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE-FGDRAAERRANSNL--------------- 269 (411)
T ss_dssp HHHH------HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHH---------------
T ss_pred HHHH------cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHH---------------
Confidence 2100 00001 17888899999999999999999987553211 01111111112222
Q ss_pred CCHHHHHHHHHcCCcHHHHHHHHHHhccCCC-CCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCC
Q 005912 213 YEIDYIARYISEGGLTGERKRWVPRRGKTPL-DPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVS 291 (670)
Q Consensus 213 ~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi-~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~ 291 (670)
...+...|..++|..+|+......- ..+. .........+...|...|+.++|..+|++.....-.. .+
T Consensus 270 ------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~ 338 (411)
T 4a1s_A 270 ------GNSHIFLGQFEDAAEHYKRTLALAVELGER--EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL---GD 338 (411)
T ss_dssp ------HHHHHTTTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---TC
T ss_pred ------HHHHHHCcCHHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC---CC
Confidence 2334677888999888877643210 0111 1111222345588899999999999999876542210 11
Q ss_pred HHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHHhCC
Q 005912 292 ESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQG 335 (670)
Q Consensus 292 ~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~G 335 (670)
......+...+...- ...|+.++|..++++.....
T Consensus 339 ~~~~~~~~~~la~~~---------~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 339 RIGEARACWSLGNAH---------SAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHHHHHHHHH---------HHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHH---------HHhccHHHHHHHHHHHHHHH
Confidence 111111111111110 25577888888888876643
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.34 E-value=1.3e-05 Score=69.44 Aligned_cols=131 Identities=13% Similarity=0.097 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHH
Q 005912 32 HFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYA 111 (670)
Q Consensus 32 tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~ 111 (670)
.|+.+...|...|++++|..+|+++.. .. ..+..+|..+...|...| +.++|..+|.++.. .. ..+..++.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~--~~-~~~~~~~~ 73 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALE--LD-PRSAEAWYNLGNAYYKQG---DYDEAIEYYQKALE--LD-PRSAEAWY 73 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HC-TTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHH--HC-TTCHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHH--cC-CcchhHHHHHHHHHHHhc---CHHHHHHHHHHHHH--HC-CCchHHHH
Confidence 467777888888888999888888762 11 346778888888888888 78888888888876 22 23567778
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 112 LLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 112 ~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
.+...|...|++++|.++|..+.+..... +.++..+...|.+.|++++|...|+.+...+
T Consensus 74 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 74 NLGNAYYKQGDYDEAIEYYQKALELDPRS---------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCC---------hHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 88888888899999998888887643211 2267788888889999999999888876543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.34 E-value=0.0015 Score=71.66 Aligned_cols=310 Identities=11% Similarity=-0.019 Sum_probs=171.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHH----
Q 005912 8 AGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQAT----CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR---- 79 (670)
Q Consensus 8 ~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak----~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k---- 79 (670)
.+++++|+..|++..+.| +...+..|=..|.. .+++++|...|++... . -+...+..|=..|..
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~--~---~~~~a~~~Lg~~y~~g~g~ 127 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL--K---GLPQAQQNLGVMYHEGNGV 127 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--T---TCHHHHHHHHHHHHHTSSS
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH--C---CCHHHHHHHHHHHHcCCCC
Confidence 677888888887777654 45666667777777 7778888888877762 2 356666666666666
Q ss_pred cCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHH
Q 005912 80 AESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK----YCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL 155 (670)
Q Consensus 80 ~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak----~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~ 155 (670)
.+ +.++|+..|.+-.. .+ +...+..|-..|.. .++.++|.+.|....+.+. . ..+..
T Consensus 128 ~~---~~~~A~~~~~~a~~--~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~---~--------~a~~~ 188 (490)
T 2xm6_A 128 KV---DKAESVKWFRLAAE--QG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGN---V--------WSCNQ 188 (490)
T ss_dssp CC---CHHHHHHHHHHHHH--TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---H--------HHHHH
T ss_pred CC---CHHHHHHHHHHHHH--CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC---H--------HHHHH
Confidence 45 57777777777766 33 45566666666666 6777788877777766531 1 15666
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHhhCCCCCCCchH-HHHhHHHH------HHHHHHHHHHHHHHcCCCHHH--HHHHH
Q 005912 156 YLRALCR----EGRIIELLEALEAMAKDNQPVPPRAM-ILSRKYRT------LVSSWIEPLQEEAELGYEIDY--IARYI 222 (670)
Q Consensus 156 LI~ay~k----~G~~eeA~~vf~~M~~~gi~i~p~~~-i~~~ty~~------ll~a~~~ll~~m~~~G~~pd~--i~~~~ 222 (670)
|-..|.+ .++.++|...|+...+.|. +... .++..|.. -...+...+....+.|...-. +-.++
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y 265 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSATSGD---ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYIL 265 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6666666 6777777777777666653 2221 12222211 123344455554444432211 11223
Q ss_pred Hc----CCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCc-------
Q 005912 223 SE----GGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLE-----DGKKYHRKLLRTLQNEGPAV------- 286 (670)
Q Consensus 223 ~~----~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~-----G~~e~A~~Lf~~M~~~gv~~------- 286 (670)
.. .+..++|..+|+...+.| ++ ..+..|- ..|... ++.++|+.+|+...+.+...
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~---~~--~a~~~Lg----~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 336 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQG---NS--DGQYYLA----HLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGA 336 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTT---CH--HHHHHHH----HHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcC---CH--HHHHHHH----HHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 33 466777777777765543 11 2222222 344444 67777777777766654431
Q ss_pred ---cCCCCHHHHHHHHHHHHHccCC--C-cccccc---cc----cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH--
Q 005912 287 ---LGDVSESDYVRVEERLKKLIKG--P-EQHVLK---PK----AASKMVVSELKEELDAQGLPTDGTRNVLYQRVQK-- 351 (670)
Q Consensus 287 ---~g~~~~~~~~~~l~~l~k~~~~--p-~~~~L~---~~----~g~~~~A~~l~~~M~~~Gip~d~t~~~Ll~a~~~-- 351 (670)
.+ .....+..++..+.+.... | .+..+- .. .++.++|..+|++-.+.|. ...+..|-..|..
T Consensus 337 ~y~~~-g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~--~~a~~~Lg~~y~~g~ 413 (490)
T 2xm6_A 337 IYFRL-GSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGL--SAAQVQLGEIYYYGL 413 (490)
T ss_dssp HHHHS-CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTS
T ss_pred HHHhC-CCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 00 1122333333333333221 1 111111 11 4567777777777777663 2334444444444
Q ss_pred --hCChhhhh
Q 005912 352 --ARRINRSR 359 (670)
Q Consensus 352 --aG~~~eA~ 359 (670)
.++.++|.
T Consensus 414 g~~~d~~~A~ 423 (490)
T 2xm6_A 414 GVERDYVQAW 423 (490)
T ss_dssp SSCCCHHHHH
T ss_pred CCCCCHHHHH
Confidence 45555554
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.30 E-value=0.0001 Score=76.04 Aligned_cols=189 Identities=12% Similarity=0.059 Sum_probs=138.6
Q ss_pred hcCCh-------HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC-HH-HHHHHHHH
Q 005912 7 KAGDH-------SNALEIAYEMEAAGRMA-TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD-TE-TYNCVIQA 76 (670)
Q Consensus 7 k~G~~-------~~Al~lf~~M~~~Gv~P-d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd-~~-tyn~LI~a 76 (670)
+.|++ ++|+.+|++-... +.| +...|..+...+.+.|++++|..+|++.. . +.|+ .. .|..+...
T Consensus 69 ~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al--~--~~p~~~~~~~~~~~~~ 143 (308)
T 2ond_A 69 EKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL--A--IEDIDPTLVYIQYMKF 143 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--T--SSSSCTHHHHHHHHHH
T ss_pred hccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHH--h--ccccCccHHHHHHHHH
Confidence 45776 8999999998863 244 56689999999999999999999999998 3 3454 33 89999999
Q ss_pred HHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHH
Q 005912 77 YTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF-TKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL 155 (670)
Q Consensus 77 y~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~-ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~ 155 (670)
+.+.| +.++|..+|.+..+ .. .++...|....... ...|+.+.|..+|+...+..+. .+..|..
T Consensus 144 ~~~~~---~~~~A~~~~~~a~~--~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~ 208 (308)
T 2ond_A 144 ARRAE---GIKSGRMIFKKARE--DA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD---------IPEYVLA 208 (308)
T ss_dssp HHHHH---CHHHHHHHHHHHHT--ST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT---------CHHHHHH
T ss_pred HHHhc---CHHHHHHHHHHHHh--cC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------cHHHHHH
Confidence 99999 78999999999987 22 23444454333332 2379999999999998875321 2338999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCCCCCCCc-hHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHH
Q 005912 156 YLRALCREGRIIELLEALEAMAKDNQPVPPR-AMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRW 234 (670)
Q Consensus 156 LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~-~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~l 234 (670)
++..+.+.|++++|..+|+....... ++|+ ... .|..++.- ....|..+.+..+
T Consensus 209 ~~~~~~~~g~~~~A~~~~~~al~~~~-l~p~~~~~---l~~~~~~~---------------------~~~~g~~~~a~~~ 263 (308)
T 2ond_A 209 YIDYLSHLNEDNNTRVLFERVLTSGS-LPPEKSGE---IWARFLAF---------------------ESNIGDLASILKV 263 (308)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHSSS-SCGGGCHH---HHHHHHHH---------------------HHHHSCHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhccC-CCHHHHHH---HHHHHHHH---------------------HHHcCCHHHHHHH
Confidence 99999999999999999999988641 2443 211 13333222 2445778888888
Q ss_pred HHHhcc
Q 005912 235 VPRRGK 240 (670)
Q Consensus 235 f~~m~~ 240 (670)
++...+
T Consensus 264 ~~~a~~ 269 (308)
T 2ond_A 264 EKRRFT 269 (308)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887765
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.29 E-value=2e-05 Score=77.94 Aligned_cols=166 Identities=10% Similarity=0.007 Sum_probs=118.9
Q ss_pred HhcCChHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCC-----CCCCCCHHHHHHH
Q 005912 6 CKAGDHSNALEIAYEMEA-------AGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE-----DYMKPDTETYNCV 73 (670)
Q Consensus 6 ~k~G~~~~Al~lf~~M~~-------~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~-----~gi~Pd~~tyn~L 73 (670)
...|++++|+.+|++..+ ........+++.+-..|...|++++|...|++..... ..-.....+|+.+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 345666777777766553 1222356788999999999999999999999876300 1112346789999
Q ss_pred HHHHHHcCCcccHHHHHHHHHHhHhcc----CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCC
Q 005912 74 IQAYTRAESYDRVQDVAELLGMMVEDH----KRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGN 148 (670)
Q Consensus 74 I~ay~k~g~~~~~~eAl~lf~eM~~~~----~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~ 148 (670)
-..|...| +.++|+..|.+..... ..-.| ...+|..+-..|...|++++|..+|....+..... . ...
T Consensus 92 ~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~--~~~ 164 (283)
T 3edt_B 92 AVLYGKRG---KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATR--L--GPD 164 (283)
T ss_dssp HHHHHTTT---CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH--S--CTT
T ss_pred HHHHHHhc---cHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--c--CCC
Confidence 99999999 7888998888876510 01123 35778889999999999999999999988641000 0 000
Q ss_pred Cch---HHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005912 149 FGD---PLSLYLRALCREGRIIELLEALEAMAK 178 (670)
Q Consensus 149 ~pd---tyn~LI~ay~k~G~~eeA~~vf~~M~~ 178 (670)
.|. ++..+-..|.+.|++++|..+|++..+
T Consensus 165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111 788999999999999999999998765
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=98.28 E-value=9.5e-05 Score=67.98 Aligned_cols=165 Identities=15% Similarity=0.042 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHH
Q 005912 30 TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 109 (670)
Q Consensus 30 ~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~T 109 (670)
...|..+...|...|++++|...|+++. .. ...+..+|..+...|...| +.++|...|.+... . ...+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~--~-~~~~~~~ 78 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVY--DA-DAFDVDVALHLGIAYVKTG---AVDRGTELLERSLA--D-APDNVKV 78 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTC--CT-TSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH--H-CTTCHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHH--Hh-CccChHHHHHHHHHHHHcC---CHHHHHHHHHHHHh--c-CCCCHHH
Confidence 3456778888999999999999999987 22 2347889999999999999 78999999999887 2 2346788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHH
Q 005912 110 YALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMI 189 (670)
Q Consensus 110 y~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i 189 (670)
|..+...|...|++++|.++|..+.+.... .+..+..+...|.+.|++++|...|+...+... .+..
T Consensus 79 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~- 145 (186)
T 3as5_A 79 ATVLGLTYVQVQKYDLAVPLLIKVAEANPI---------NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP---NEGK- 145 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHH-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCcH---------hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc---cchH-
Confidence 899999999999999999999998875322 122788899999999999999999999877642 2211
Q ss_pred HHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhcc
Q 005912 190 LSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGK 240 (670)
Q Consensus 190 ~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~ 240 (670)
.+..+... +...|..++|..+++....
T Consensus 146 ---~~~~la~~---------------------~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 146 ---VHRAIAFS---------------------YEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp ---HHHHHHHH---------------------HHHTTCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHH---------------------HHHcCCHHHHHHHHHHHHH
Confidence 23333322 3567788999998887754
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.28 E-value=1.9e-05 Score=68.40 Aligned_cols=125 Identities=14% Similarity=0.081 Sum_probs=105.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcC
Q 005912 2 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 81 (670)
Q Consensus 2 I~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g 81 (670)
...|...|++++|+.+|+++...+ ..+...+..+...|...|++++|..+|+++.. .. ..+...|..+...|.+.|
T Consensus 8 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 8 GNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LD-PRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHH--HC-CCchHHHHHHHHHHHHhc
Confidence 356788999999999999998753 34678889999999999999999999999873 21 346788999999999999
Q ss_pred CcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005912 82 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNY 136 (670)
Q Consensus 82 ~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~ 136 (670)
+.++|+.+|.++.. .. ..+..++..+...|.+.|++++|...|..+...
T Consensus 84 ---~~~~A~~~~~~~~~--~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 84 ---DYDEAIEYYQKALE--LD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp ---CHHHHHHHHHHHHH--HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHH--hC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 78999999999987 22 335788889999999999999999999988764
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=0.0006 Score=68.19 Aligned_cols=228 Identities=8% Similarity=-0.095 Sum_probs=167.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHH----cCCcccHHHHHHHHHHhHhccCCCC
Q 005912 29 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR----AESYDRVQDVAELLGMMVEDHKRLQ 104 (670)
Q Consensus 29 d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k----~g~~~~~~eAl~lf~eM~~~~~gi~ 104 (670)
+..++..+-..|.+.|++++|...|++... .-+...|..|-..|.+ .+ +.++|+..|.+-.+ .+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-----~~~~~a~~~lg~~~~~g~~~~~---~~~~A~~~~~~a~~--~~-- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD-----LKENSGCFNLGVLYYQGQGVEK---NLKKAASFYAKACD--LN-- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHTSSSCC---CHHHHHHHHHHHHH--TT--
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHcCCCcCC---CHHHHHHHHHHHHH--CC--
Confidence 556777888889999999999999999883 3456788888888988 88 78999999999888 44
Q ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 005912 105 PNVKTYALLVECFTK----YCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCR----EGRIIELLEALEAM 176 (670)
Q Consensus 105 Pd~~Ty~~LL~a~ak----~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k----~G~~eeA~~vf~~M 176 (670)
+...+..+-..|.. .+++++|...|......+ .+.++..|-..|.+ .|++++|...|+..
T Consensus 73 -~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-----------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a 140 (273)
T 1ouv_A 73 -YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK-----------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKA 140 (273)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-----------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHH
Confidence 77888889999999 999999999999988753 12378888889999 99999999999998
Q ss_pred hhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHc----CCcHHHHHHHHHHhccCCCCCCcccchh
Q 005912 177 AKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISE----GGLTGERKRWVPRRGKTPLDPDAVGFIY 252 (670)
Q Consensus 177 ~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~----~g~~~~a~~lf~~m~~~gi~Pd~d~~ty 252 (670)
.+.+. +.. +..+-.. +.. .+..++|..+|+...+.+ ++ ..+
T Consensus 141 ~~~~~---~~a------~~~lg~~---------------------~~~~~~~~~~~~~A~~~~~~a~~~~---~~--~a~ 185 (273)
T 1ouv_A 141 CDLND---GDG------CTILGSL---------------------YDAGRGTPKDLKKALASYDKACDLK---DS--PGC 185 (273)
T ss_dssp HHTTC---HHH------HHHHHHH---------------------HHHTSSSCCCHHHHHHHHHHHHHTT---CH--HHH
T ss_pred HhcCc---HHH------HHHHHHH---------------------HHcCCCCCCCHHHHHHHHHHHHHCC---CH--HHH
Confidence 88662 222 2222111 233 678899999998887653 22 333
Q ss_pred hhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHH
Q 005912 253 SNPMETSFKQRCL----EDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELK 328 (670)
Q Consensus 253 ~~LIe~lv~~~~~----~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~ 328 (670)
.. +...|.. .++.++|+..|+.....+.. ..+..+-..+.+ +. ...+..++|..+|
T Consensus 186 ~~----lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~-------~a~~~l~~~~~~-g~--------~~~~~~~~A~~~~ 245 (273)
T 1ouv_A 186 FN----AGNMYHHGEGATKNFKEALARYSKACELENG-------GGCFNLGAMQYN-GE--------GVTRNEKQAIENF 245 (273)
T ss_dssp HH----HHHHHHHTCSSCCCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHT-TS--------SSSCCSTTHHHHH
T ss_pred HH----HHHHHHcCCCCCccHHHHHHHHHHHHhCCCH-------HHHHHHHHHHHc-CC--------CcccCHHHHHHHH
Confidence 33 3366677 99999999999998876532 122221122221 00 1245677888888
Q ss_pred HHHHhCC
Q 005912 329 EELDAQG 335 (670)
Q Consensus 329 ~~M~~~G 335 (670)
++-.+.|
T Consensus 246 ~~a~~~~ 252 (273)
T 1ouv_A 246 KKGCKLG 252 (273)
T ss_dssp HHHHHHT
T ss_pred HHHHHcC
Confidence 8888777
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00012 Score=78.97 Aligned_cols=220 Identities=6% Similarity=-0.057 Sum_probs=154.1
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI-PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~-~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
.|.+.|++++|+..|++..... .-+...|+.+-..|.+.|+ +++|...|++... .. .-+...|+.+-..|.+.|
T Consensus 106 ~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~--l~-P~~~~a~~~~g~~~~~~g- 180 (382)
T 2h6f_A 106 VLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE--EQ-PKNYQVWHHRRVLVEWLR- 180 (382)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HC-TTCHHHHHHHHHHHHHHT-
T ss_pred HHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHH--HC-CCCHHHHHHHHHHHHHcc-
Confidence 4667889999999999888642 2357788888888999996 9999999998873 11 236788999989999999
Q ss_pred cccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALC 161 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~ 161 (670)
+.++|+..|.+..+ +.| +...|..+-.++.+.|++++|+..|+.+.+..... +..|+.+-..|.
T Consensus 181 --~~~eAl~~~~kal~----ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~---------~~a~~~lg~~l~ 245 (382)
T 2h6f_A 181 --DPSQELEFIADILN----QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN---------NSVWNQRYFVIS 245 (382)
T ss_dssp --CCTTHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC---------HHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHH----hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHH
Confidence 66788889998877 344 57888889999999999999999999988754321 127888888888
Q ss_pred H-cCCHHHH-----HHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCC--cHHHHHH
Q 005912 162 R-EGRIIEL-----LEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGG--LTGERKR 233 (670)
Q Consensus 162 k-~G~~eeA-----~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g--~~~~a~~ 233 (670)
+ .|..++| +..|+...+.. |+... .|..+... +...| ..+++..
T Consensus 246 ~l~~~~~eA~~~~el~~~~~Al~l~----P~~~~---a~~~l~~l---------------------l~~~g~~~~~~a~~ 297 (382)
T 2h6f_A 246 NTTGYNDRAVLEREVQYTLEMIKLV----PHNES---AWNYLKGI---------------------LQDRGLSKYPNLLN 297 (382)
T ss_dssp HTTCSCSHHHHHHHHHHHHHHHHHS----TTCHH---HHHHHHHH---------------------HTTTCGGGCHHHHH
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHC----CCCHH---HHHHHHHH---------------------HHccCccchHHHHH
Confidence 8 6665777 47777766643 33211 13332222 23344 4667777
Q ss_pred HHHHhccCCCCCCcccchhhhhHHHHHHHHHhcC---------CHHHHHHHHHHH
Q 005912 234 WVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLED---------GKKYHRKLLRTL 279 (670)
Q Consensus 234 lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G---------~~e~A~~Lf~~M 279 (670)
++..+ + ..|+. .+.+.. +...|.+.| ..++|+.+|+.+
T Consensus 298 ~~~~~-~--~~p~~-~~al~~----La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 298 QLLDL-Q--PSHSS-PYLIAF----LVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHHHH-T--TTCCC-HHHHHH----HHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHh-c--cCCCC-HHHHHH----HHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 77776 2 33443 233433 346666653 358999999998
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.17 E-value=2.2e-05 Score=79.10 Aligned_cols=250 Identities=12% Similarity=0.043 Sum_probs=145.7
Q ss_pred CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhcc-----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcc--
Q 005912 65 PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDH-----KRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYE-- 137 (670)
Q Consensus 65 Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~-----~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g-- 137 (670)
.+..+|..+...|...| +.++|+.+|.+..... ........++..+...|...|++++|..+|.......
T Consensus 25 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQG---RYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp HHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 34677888888899999 7788888888876510 0122245678888899999999999999999887641
Q ss_pred ----CCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC----CCCCchHHHHhHHHHHHHHHHHHHHHHH
Q 005912 138 ----GGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQ----PVPPRAMILSRKYRTLVSSWIEPLQEEA 209 (670)
Q Consensus 138 ----~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi----~i~p~~~i~~~ty~~ll~a~~~ll~~m~ 209 (670)
..+.. +.+|+.+...|...|++++|...|++..+... .-.+... ..+..+.
T Consensus 102 ~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~---~~~~~la----------- 160 (311)
T 3nf1_A 102 TLGKDHPAV-------AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVA---KQLNNLA----------- 160 (311)
T ss_dssp HHCTTCHHH-------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHH---HHHHHHH-----------
T ss_pred HhCCCChHH-------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHH---HHHHHHH-----------
Confidence 11111 11788999999999999999999998765410 0012211 1222222
Q ss_pred HcCCCHHHHHHHHHcCCcHHHHHHHHHHhccC---CCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---
Q 005912 210 ELGYEIDYIARYISEGGLTGERKRWVPRRGKT---PLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEG--- 283 (670)
Q Consensus 210 ~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~---gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~g--- 283 (670)
..+...|..++|..+|+..... ...++. .........+...|.+.|+.++|..+|++.....
T Consensus 161 ----------~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 228 (311)
T 3nf1_A 161 ----------LLCQNQGKYEEVEYYYQRALEIYQTKLGPDD--PNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHER 228 (311)
T ss_dssp ----------HHHHTTTCHHHHHHHHHHHHHHHHHTSCTTC--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 2346778889999888877542 111111 1111222345588899999999999999887531
Q ss_pred ----CCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHhCChhhh
Q 005912 284 ----PAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTD-GTRNVLYQRVQKARRINRS 358 (670)
Q Consensus 284 ----v~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~Gip~d-~t~~~Ll~a~~~aG~~~eA 358 (670)
.. +....+......+...... + ...+...++...++...... |.. .++..+-..|...|++++|
T Consensus 229 ~~~~~~----~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 297 (311)
T 3nf1_A 229 EFGSVD----DENKPIWMHAEEREECKGK--Q----KDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAA 297 (311)
T ss_dssp HHC----------CCHHHHHHHHHHC-------------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHH
T ss_pred cCCCCC----cchHHHHHHHHHHHHhcCc--h----hhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHH
Confidence 11 1111111222222222210 0 11222222333444433322 322 6888899999999999998
Q ss_pred hcC
Q 005912 359 RGR 361 (670)
Q Consensus 359 ~~~ 361 (670)
...
T Consensus 298 ~~~ 300 (311)
T 3nf1_A 298 ETL 300 (311)
T ss_dssp HHH
T ss_pred HHH
Confidence 743
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.5e-05 Score=80.59 Aligned_cols=249 Identities=8% Similarity=-0.122 Sum_probs=160.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC----HHHHHHH
Q 005912 3 AEDCKAGDHSNALEIAYEMEAA----GRMA-TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD----TETYNCV 73 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~----Gv~P-d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd----~~tyn~L 73 (670)
..|...|++++|+..|++.... +-.| ...++..+-..|...|++++|...|++... ...-.++ ..+|+.+
T Consensus 51 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~l 129 (338)
T 3ro2_A 51 NAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLD-ISRELNDKVGEARALYNL 129 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-HHHHhcCchHHHHHHHHH
Confidence 4677899999999999886532 2222 256778888999999999999999988652 0000122 4588888
Q ss_pred HHHHHHcCCccc--------------------HHHHHHHHHHhHhcc--CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 005912 74 IQAYTRAESYDR--------------------VQDVAELLGMMVEDH--KRLQP-NVKTYALLVECFTKYCAVTEAIRHF 130 (670)
Q Consensus 74 I~ay~k~g~~~~--------------------~~eAl~lf~eM~~~~--~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf 130 (670)
-..|...| + .++|+..|.+..... .+-.| ...+|..+...|...|++++|...+
T Consensus 130 ~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 206 (338)
T 3ro2_A 130 GNVYHAKG---KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAH 206 (338)
T ss_dssp HHHHHHHH---HTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHcC---cccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 89999999 7 788888887764310 11111 2347788888999999999999999
Q ss_pred HHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHH
Q 005912 131 RALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAE 210 (670)
Q Consensus 131 ~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~ 210 (670)
....+....... ......++..+...|.+.|++++|...|++....... ..+.......+..+.
T Consensus 207 ~~a~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la------------ 270 (338)
T 3ro2_A 207 EQRLLIAKEFGD---KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ-LKDRAVEAQSCYSLG------------ 270 (338)
T ss_dssp HHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHH------------
T ss_pred HHHHHHHHhcCC---hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHH------------
Confidence 987753211000 0000017888999999999999999999876543211 111111111122222
Q ss_pred cCCCHHHHHHHHHcCCcHHHHHHHHHHhccCC-CCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005912 211 LGYEIDYIARYISEGGLTGERKRWVPRRGKTP-LDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNE 282 (670)
Q Consensus 211 ~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~g-i~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~ 282 (670)
..+...|..++|..+++...... -.++. .........+...|.+.|+.++|..+|++....
T Consensus 271 ---------~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 271 ---------NTYTLLQDYEKAIDYHLKHLAIAQELKDR--IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp ---------HHHHHTTCHHHHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred ---------HHHHHhcCHHHHHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 23456678888888887764310 00111 111112234568889999999999999988754
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=98.14 E-value=0.0088 Score=73.22 Aligned_cols=101 Identities=8% Similarity=0.058 Sum_probs=67.1
Q ss_pred HHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHH
Q 005912 220 RYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVE 299 (670)
Q Consensus 220 ~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l 299 (670)
..|.+.|..+++..++....+.. +++ ...+.+ ..+|++.++++....++ .+ ++...+..+=
T Consensus 1142 ~~~~~lGkyEEAIeyL~mArk~~--~e~--~Idt~L----afaYAKl~rleele~fI-----~~------~n~ad~~~iG 1202 (1630)
T 1xi4_A 1142 QAANTSGNWEELVKYLQMARKKA--RES--YVETEL----IFALAKTNRLAELEEFI-----NG------PNNAHIQQVG 1202 (1630)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhc--ccc--cccHHH----HHHHHhhcCHHHHHHHH-----hC------CCHHHHHHHH
Confidence 44577888899998888766543 332 222223 36778888887544332 11 3444444443
Q ss_pred HHHHHccCCCcccccccccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCChhhhhc
Q 005912 300 ERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRG 360 (670)
Q Consensus 300 ~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~Gip~d~t~~~Ll~a~~~aG~~~eA~~ 360 (670)
..|. ..|.+++|..+|... ..|..+...+++.|++++|..
T Consensus 1203 d~le-------------~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIE 1242 (1630)
T 1xi4_A 1203 DRCY-------------DEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVD 1242 (1630)
T ss_pred HHHH-------------hcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHH
Confidence 4444 456699999999984 479999999999999988863
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.14 E-value=0.0087 Score=65.57 Aligned_cols=234 Identities=10% Similarity=-0.053 Sum_probs=169.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHH----cCCcc
Q 005912 13 NALEIAYEMEAAGRMATTFHFNHLLSCQAT----CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR----AESYD 84 (670)
Q Consensus 13 ~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak----~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k----~g~~~ 84 (670)
.++..+....+.| +...+..|=..|.. .+++++|...|++... .-+...+..|=..|.. .+
T Consensus 25 ~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~-----~~~~~a~~~Lg~~y~~g~g~~~--- 93 (490)
T 2xm6_A 25 VNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAE-----QGYTPAEYVLGLRYMNGEGVPQ--- 93 (490)
T ss_dssp CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHTSSSCC---
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHcCCCCCC---
Confidence 3456666665554 67788888888888 8999999999999873 2467788888888887 67
Q ss_pred cHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHH
Q 005912 85 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK----YCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRAL 160 (670)
Q Consensus 85 ~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak----~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay 160 (670)
+.++|++.|.+-.+ .+ +...+..|-..|.. .++.++|...|+.....+. ++.+..|-..|
T Consensus 94 ~~~~A~~~~~~a~~--~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~-----------~~a~~~Lg~~y 157 (490)
T 2xm6_A 94 DYAQAVIWYKKAAL--KG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGR-----------DSGQQSMGDAY 157 (490)
T ss_dssp CHHHHHHHHHHHHH--TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-----------HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC-----------HHHHHHHHHHH
Confidence 78999999999887 44 66777778888888 8999999999999887652 22677787888
Q ss_pred HH----cCCHHHHHHHHHHHhhCCCCCCCchH-HHHhHHHH------HHHHHHHHHHHHHHcCCCHHH--HHHHHHc---
Q 005912 161 CR----EGRIIELLEALEAMAKDNQPVPPRAM-ILSRKYRT------LVSSWIEPLQEEAELGYEIDY--IARYISE--- 224 (670)
Q Consensus 161 ~k----~G~~eeA~~vf~~M~~~gi~i~p~~~-i~~~ty~~------ll~a~~~ll~~m~~~G~~pd~--i~~~~~~--- 224 (670)
.. .++.++|...|+...+.|. +... .++..|.. -...+...+....+.|...-. +-.++..
T Consensus 158 ~~g~g~~~d~~~A~~~~~~a~~~~~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g 234 (490)
T 2xm6_A 158 FEGDGVTRDYVMAREWYSKAAEQGN---VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIG 234 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSS
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCC
Confidence 87 8999999999999888763 3332 23333322 245566677777776643222 2233433
Q ss_pred -CCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC
Q 005912 225 -GGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCL----EDGKKYHRKLLRTLQNEGPA 285 (670)
Q Consensus 225 -~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~----~G~~e~A~~Lf~~M~~~gv~ 285 (670)
.+..++|..+|+...+.| ++ ..+..|- ..|.. .++.++|+.+|+.....|..
T Consensus 235 ~~~~~~~A~~~~~~a~~~~---~~--~a~~~lg----~~y~~g~~~~~d~~~A~~~~~~a~~~~~~ 291 (490)
T 2xm6_A 235 VTQDYTQSRVLFSQSAEQG---NS--IAQFRLG----YILEQGLAGAKEPLKALEWYRKSAEQGNS 291 (490)
T ss_dssp SCCCHHHHHHHHHHHHTTT---CH--HHHHHHH----HHHHHTTTSSCCHHHHHHHHHHHHTTTCH
T ss_pred CCCCHHHHHHHHHHHHHCC---CH--HHHHHHH----HHHHCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 678999999999987764 22 3333332 34444 89999999999999877643
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.13 E-value=0.001 Score=69.73 Aligned_cols=247 Identities=10% Similarity=-0.020 Sum_probs=157.8
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC----HHHHHHHHH
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATTF----HFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD----TETYNCVIQ 75 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~----tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd----~~tyn~LI~ 75 (670)
.+...|+++.|+..+++.....-..+.. .++.+-..|...|+++.|...|++... ...-.++ ..+++.+-.
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQ-MARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HHHhcCcHHHHHHHHHHHHH
Confidence 3567899999999999877643222222 456677788899999999999988652 0000122 234667777
Q ss_pred HHHHcCCcccHHHHHHHHHHhHhcc--CCCC--CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCc
Q 005912 76 AYTRAESYDRVQDVAELLGMMVEDH--KRLQ--PN-VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFG 150 (670)
Q Consensus 76 ay~k~g~~~~~~eAl~lf~eM~~~~--~gi~--Pd-~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~p 150 (670)
.|...| +.++|...|.+..... .+.. |. ..++..+-..|...|++++|...+.............. ..
T Consensus 102 ~~~~~G---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~ 174 (373)
T 1hz4_A 102 ILFAQG---FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ----QL 174 (373)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG----GH
T ss_pred HHHHCC---CHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH----HH
Confidence 888999 7888888888765410 1221 32 35667788889999999999999998876432211000 01
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHH
Q 005912 151 DPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGE 230 (670)
Q Consensus 151 dtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~ 230 (670)
.+|..+-..|...|++++|...+++............. +...+... ....+...|..++
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~-----~~~~~~~~----------------~~~~~~~~g~~~~ 233 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSD-----WISNANKV----------------RVIYWQMTGDKAA 233 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHH-----HHHHHHHH----------------HHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchh-----HHHHHHHH----------------HHHHHHHCCCHHH
Confidence 16888889999999999999999987643211011111 11110000 0112346688999
Q ss_pred HHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005912 231 RKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNE 282 (670)
Q Consensus 231 a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~ 282 (670)
|..++....... |...++.... ...+...+...|+.++|..+++.....
T Consensus 234 A~~~~~~a~~~~--~~~~~~~~~~-~~~la~~~~~~g~~~~A~~~l~~a~~~ 282 (373)
T 1hz4_A 234 AANWLRHTAKPE--FANNHFLQGQ-WRNIARAQILLGEFEPAEIVLEELNEN 282 (373)
T ss_dssp HHHHHHHSCCCC--CTTCGGGHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCC--CCcchhhHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999998876532 2211121111 123557888999999999999887543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.11 E-value=0.0006 Score=67.48 Aligned_cols=227 Identities=8% Similarity=0.020 Sum_probs=117.5
Q ss_pred HHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCC
Q 005912 71 NCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN-VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNF 149 (670)
Q Consensus 71 n~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd-~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~ 149 (670)
...-..|.+.| +.++|+.+|.+..+ ..|+ ...|..+..+|...|++++|...|.........+...
T Consensus 7 ~~~a~~~~~~~---~~~~A~~~~~~~l~----~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~------ 73 (272)
T 3u4t_A 7 FRYADFLFKNN---NYAEAIEVFNKLEA----KKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAK------ 73 (272)
T ss_dssp HHHHHHHHTTT---CHHHHHHHHHHHHH----TTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCC------
T ss_pred HHHHHHHHHhc---CHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHH------
Confidence 33445555666 56677777777665 1232 3356666667777777777777777666532111111
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHH
Q 005912 150 GDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTG 229 (670)
Q Consensus 150 pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~ 229 (670)
+.+|..+-..|.+.|++++|...|+...+.... .+. .+..+... +...|..+
T Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~------~~~~l~~~---------------------~~~~~~~~ 125 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT-RLD------MYGQIGSY---------------------FYNKGNFP 125 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTH------HHHHHHHH---------------------HHHTTCHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc-cHH------HHHHHHHH---------------------HHHccCHH
Confidence 114666677777777777777777766654321 111 12222222 24556677
Q ss_pred HHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCC
Q 005912 230 ERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGP 309 (670)
Q Consensus 230 ~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p 309 (670)
+|...|+..... .|+. ..+|.. +...+...++.++|...|.......-. +...+...-..+..+++
T Consensus 126 ~A~~~~~~al~~--~~~~-~~~~~~----l~~~~~~~~~~~~A~~~~~~a~~~~p~-----~~~~~~~~~~~~~~~~~-- 191 (272)
T 3u4t_A 126 LAIQYMEKQIRP--TTTD-PKVFYE----LGQAYYYNKEYVKADSSFVKVLELKPN-----IYIGYLWRARANAAQDP-- 191 (272)
T ss_dssp HHHHHHGGGCCS--SCCC-HHHHHH----HHHHHHHTTCHHHHHHHHHHHHHHSTT-----CHHHHHHHHHHHHHHST--
T ss_pred HHHHHHHHHhhc--CCCc-HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhCcc-----chHHHHHHHHHHHHcCc--
Confidence 777777666543 2322 122211 111223345777777777777654322 22222222222222211
Q ss_pred cccccccccCCHHHHHHHHHHHHhCCC--CC------HHHHHHHHHHHHHhCChhhhhc
Q 005912 310 EQHVLKPKAASKMVVSELKEELDAQGL--PT------DGTRNVLYQRVQKARRINRSRG 360 (670)
Q Consensus 310 ~~~~L~~~~g~~~~A~~l~~~M~~~Gi--p~------d~t~~~Ll~a~~~aG~~~eA~~ 360 (670)
....++|...+++..+..- |. ..+|..+-..+...|++++|..
T Consensus 192 --------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 192 --------DTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp --------TCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------chhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 0113334445544433221 21 1467778888889999998864
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.11 E-value=2e-05 Score=82.69 Aligned_cols=246 Identities=8% Similarity=-0.108 Sum_probs=160.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC----HHHHHHH
Q 005912 3 AEDCKAGDHSNALEIAYEMEAA----GRMA-TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD----TETYNCV 73 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~----Gv~P-d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd----~~tyn~L 73 (670)
..|...|++++|+..|++.... +-.| ...+|..+-..|...|++++|...|++... ...-.++ ..+|+.+
T Consensus 55 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~l 133 (406)
T 3sf4_A 55 NAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLD-ISRELNDKVGEARALYNL 133 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHhcccccchHHHHHHH
Confidence 4677899999999999886532 2222 255778888899999999999999988753 0000122 4588888
Q ss_pred HHHHHHcCCccc--------------------HHHHHHHHHHhHhcc--CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 005912 74 IQAYTRAESYDR--------------------VQDVAELLGMMVEDH--KRLQP-NVKTYALLVECFTKYCAVTEAIRHF 130 (670)
Q Consensus 74 I~ay~k~g~~~~--------------------~~eAl~lf~eM~~~~--~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf 130 (670)
-..|...| + .++|+..|.+..... .+-.| ...+|..+-..|...|++++|...|
T Consensus 134 ~~~~~~~g---~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 210 (406)
T 3sf4_A 134 GNVYHAKG---KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAH 210 (406)
T ss_dssp HHHHHHHH---HTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHH
T ss_pred HHHHHHcC---CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 89999999 7 788888887654310 11112 2357888889999999999999999
Q ss_pred HHHHHccCCCcccccCCCCc---hHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHH
Q 005912 131 RALQNYEGGTKVLHNEGNFG---DPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQE 207 (670)
Q Consensus 131 ~~M~~~g~~~~v~~~~g~~p---dtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~ 207 (670)
....+..... +..+ .+|+.+-..|.+.|++++|...|+...+.... ..+......++..+.
T Consensus 211 ~~al~~~~~~------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la--------- 274 (406)
T 3sf4_A 211 EQRLLIAKEF------GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ-LKDRAVEAQSCYSLG--------- 274 (406)
T ss_dssp HHHHHHHHHT------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHH---------
T ss_pred HHHHHHHHhc------CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh-CcCchHHHHHHHHHH---------
Confidence 9887532110 0000 17888999999999999999999987543211 111111111222222
Q ss_pred HHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCC-CCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005912 208 EAELGYEIDYIARYISEGGLTGERKRWVPRRGKTP-LDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNE 282 (670)
Q Consensus 208 m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~g-i~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~ 282 (670)
..+...|..++|..+++...... -.++. .........+...|.+.|+.++|...|++....
T Consensus 275 ------------~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 275 ------------NTYTLLQDYEKAIDYHLKHLAIAQELNDR--IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp ------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ------------HHHHHhCcHHHHHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 23466778888888887764311 00111 111122234558889999999999999886543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00011 Score=77.95 Aligned_cols=281 Identities=9% Similarity=-0.109 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC-H----HHHHHHHHHHHHcCCcccHHHHHHHHHHhHhcc--CCC-
Q 005912 32 HFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD-T----ETYNCVIQAYTRAESYDRVQDVAELLGMMVEDH--KRL- 103 (670)
Q Consensus 32 tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd-~----~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~--~gi- 103 (670)
.+..+-..|...|++++|..+|++... . .|+ . ..|..+-..|...| +.++|+..|.+..... .+-
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~--~--~~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~ 122 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQ--A--GTEDLRTLSAIYSQLGNAYFYLG---DYNKAMQYHKHDLTLAKSMNDR 122 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--H--CCSCHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHH--h--cccChhHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHccCc
Confidence 344455678899999999999999873 2 333 2 57889999999999 7888888888775410 111
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCc---hHHHHHHHHHHHcCC---------------
Q 005912 104 QPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFG---DPLSLYLRALCREGR--------------- 165 (670)
Q Consensus 104 ~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~p---dtyn~LI~ay~k~G~--------------- 165 (670)
.....+|..+-..|...|++++|...|......... .+..+ .+|+.+-..|...|+
T Consensus 123 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~ 196 (411)
T 4a1s_A 123 LGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQ------LGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVK 196 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------HTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH------hhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhh
Confidence 123467888889999999999999999987753110 00011 178889999999999
Q ss_pred --HHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCCC
Q 005912 166 --IIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPL 243 (670)
Q Consensus 166 --~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi 243 (670)
+++|...|++..+..... .+.......+..+ ...+...|..++|..+|+......-
T Consensus 197 ~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~l---------------------a~~~~~~g~~~~A~~~~~~al~~~~ 254 (411)
T 4a1s_A 197 EALTRAVEFYQENLKLMRDL-GDRGAQGRACGNL---------------------GNTYYLLGDFQAAIEHHQERLRIAR 254 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHH---------------------HHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH---------------------HHHHHHcCChHHHHHHHHHHHHHHH
Confidence 888888887754321000 0101001112222 2234566788888888877643210
Q ss_pred -CCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHH
Q 005912 244 -DPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKM 322 (670)
Q Consensus 244 -~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~ 322 (670)
.++. .........+...|...|+.++|...|++.....-.. .+......+...+... -...|+++
T Consensus 255 ~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~---------~~~~g~~~ 320 (411)
T 4a1s_A 255 EFGDR--AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL---GEREVEAQSCYSLGNT---------YTLLHEFN 320 (411)
T ss_dssp HHTCH--HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHH---------HHHTTCHH
T ss_pred hcCCc--HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHH---------HHHcCCHH
Confidence 0111 1111122235588899999999999998876542210 1111111222112111 02567799
Q ss_pred HHHHHHHHHHhC----CCCCH--HHHHHHHHHHHHhCChhhhhcC
Q 005912 323 VVSELKEELDAQ----GLPTD--GTRNVLYQRVQKARRINRSRGR 361 (670)
Q Consensus 323 ~A~~l~~~M~~~----Gip~d--~t~~~Ll~a~~~aG~~~eA~~~ 361 (670)
+|..++++.... +-+.. .++..+-..+...|+.++|...
T Consensus 321 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 365 (411)
T 4a1s_A 321 TAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKY 365 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 999999887553 22222 4777888999999999998754
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.08 E-value=0.0005 Score=76.42 Aligned_cols=218 Identities=7% Similarity=-0.051 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-------cCChH-------HHHHHHHHchhCCCCCCC-CHHHHHHHHHHH
Q 005912 13 NALEIAYEMEAAGRMATTFHFNHLLSCQAT-------CGIPE-------VAFATFENMEYGEDYMKP-DTETYNCVIQAY 77 (670)
Q Consensus 13 ~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak-------~G~~e-------~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay 77 (670)
+|+.+|++.... ..-+...|..+...+.+ .|+++ +|..+|++.. . .+.| +...|..+...+
T Consensus 256 ~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al--~-~~~p~~~~l~~~~~~~~ 331 (530)
T 2ooe_A 256 RVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAI--S-TLLKKNMLLYFAYADYE 331 (530)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT--T-TTCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHH--H-HhCcccHHHHHHHHHHH
Confidence 666778776654 23367788888888776 69987 8999999987 2 2234 588999999999
Q ss_pred HHcCCcccHHHHHHHHHHhHhccCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHH
Q 005912 78 TRAESYDRVQDVAELLGMMVEDHKRLQPN--VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL 155 (670)
Q Consensus 78 ~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd--~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~ 155 (670)
.+.| +.++|..+|+...+ +.|+ ...|......+.+.|+++.|+.+|....+.... . +..|-.
T Consensus 332 ~~~g---~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~--------~~~~~~ 395 (530)
T 2ooe_A 332 ESRM---KYEKVHSIYNRLLA----IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-R--------HHVYVT 395 (530)
T ss_dssp HHTT---CHHHHHHHHHHHHH----SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-C--------THHHHH
T ss_pred HhcC---CHHHHHHHHHHHhC----ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-c--------hHHHHH
Confidence 9999 88999999999987 3564 257888888899999999999999998874221 1 112222
Q ss_pred HHH-HHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHH
Q 005912 156 YLR-ALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRW 234 (670)
Q Consensus 156 LI~-ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~l 234 (670)
... .|...|+.++|..+|+...+.. |+... .+..++.. ....|..+.|+.+
T Consensus 396 ~a~~~~~~~~~~~~A~~~~e~al~~~----p~~~~---~~~~~~~~---------------------~~~~g~~~~Ar~~ 447 (530)
T 2ooe_A 396 AALMEYYCSKDKSVAFKIFELGLKKY----GDIPE---YVLAYIDY---------------------LSHLNEDNNTRVL 447 (530)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHH----TTCHH---HHHHHHHH---------------------HTTTTCHHHHHHH
T ss_pred HHHHHHHHcCChhHHHHHHHHHHHHC----CCCHH---HHHHHHHH---------------------HHhCCCHhhHHHH
Confidence 221 2346899999999999887653 32211 13333322 3566899999999
Q ss_pred HHHhccCC-CCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005912 235 VPRRGKTP-LDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNE 282 (670)
Q Consensus 235 f~~m~~~g-i~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~ 282 (670)
|+.....+ ..|......|... +....+.|+.+.+..++..+...
T Consensus 448 ~~~al~~~~~~~~~~~~lw~~~----~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 448 FERVLTSGSLPPEKSGEIWARF----LAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHSCCSCGGGCHHHHHHH----HHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCHHHHHHHHHHH----HHHHHHcCCHHHHHHHHHHHHHH
Confidence 99987642 3333211234333 35557789999999999887654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00063 Score=83.05 Aligned_cols=279 Identities=11% Similarity=-0.007 Sum_probs=164.7
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccH
Q 005912 7 KAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRV 86 (670)
Q Consensus 7 k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~ 86 (670)
..+++++|.++..+.. +..+|..+=.++...|++++|..-|.+- -|...|.-++.+|.+.| +.
T Consensus 1088 ~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA--------dD~say~eVa~~~~~lG---ky 1150 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA--------DDPSSYMEVVQAANTSG---NW 1150 (1630)
T ss_pred HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc--------CChHHHHHHHHHHHHcC---CH
Confidence 6678888888877552 4677788888888888888888888543 36777888888888888 67
Q ss_pred HHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCH
Q 005912 87 QDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRI 166 (670)
Q Consensus 87 ~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~ 166 (670)
++|+++|..-+. ..++....+.+..+|++.++++....+. + .++.. .|..+=..|-..|++
T Consensus 1151 EEAIeyL~mArk----~~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~a--------d~~~iGd~le~eg~Y 1211 (1630)
T 1xi4_A 1151 EELVKYLQMARK----KARESYVETELIFALAKTNRLAELEEFI----N---GPNNA--------HIQQVGDRCYDEKMY 1211 (1630)
T ss_pred HHHHHHHHHHHh----hcccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHH--------HHHHHHHHHHhcCCH
Confidence 788888876544 2344444455888888888877544332 1 11111 344566666677777
Q ss_pred HHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHH---HHHHHHcCCcHHHHHHHHHHhccCCC
Q 005912 167 IELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDY---IARYISEGGLTGERKRWVPRRGKTPL 243 (670)
Q Consensus 167 eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~---i~~~~~~~g~~~~a~~lf~~m~~~gi 243 (670)
++|..+|.... .|......+...+-++.+++..+.. ..+.. +...|...|....|......+..
T Consensus 1212 eeA~~~Y~kA~------ny~rLA~tLvkLge~q~AIEaarKA----~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv--- 1278 (1630)
T 1xi4_A 1212 DAAKLLYNNVS------NFGRLASTLVHLGEYQAAVDGARKA----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV--- 1278 (1630)
T ss_pred HHHHHHHHhhh------HHHHHHHHHHHhCCHHHHHHHHHHh----CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhc---
Confidence 77777776631 1111110111111111221111111 11221 23445556666666665443222
Q ss_pred CCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHHH
Q 005912 244 DPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMV 323 (670)
Q Consensus 244 ~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~ 323 (670)
+++.+ +.++..|-+.|.+++|+.+++.-.... + ...+.++.+-..+.+- +.+...+
T Consensus 1279 --~~deL------eeli~yYe~~G~feEAI~LlE~aL~Le-r----aH~gmftELaiLyaKy-----------~peklmE 1334 (1630)
T 1xi4_A 1279 --HADEL------EELINYYQDRGYFEELITMLEAALGLE-R----AHMGMFTELAILYSKF-----------KPQKMRE 1334 (1630)
T ss_pred --CHHHH------HHHHHHHHHcCCHHHHHHHHHHHhccC-h----hHhHHHHHHHHHHHhC-----------CHHHHHH
Confidence 22112 345588899999999999996654333 2 3445555544444442 4455777
Q ss_pred HHHHHHHHHhCCCCC-------HHHHHHHHHHHHHhCChhhhhc
Q 005912 324 VSELKEELDAQGLPT-------DGTRNVLYQRVQKARRINRSRG 360 (670)
Q Consensus 324 A~~l~~~M~~~Gip~-------d~t~~~Ll~a~~~aG~~~eA~~ 360 (670)
+.++|.. +-.+|+ ...|.-++..|.+.|.++.|..
T Consensus 1335 hlk~f~~--rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1335 HLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHH--hcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 7777763 333444 2578888888999999998874
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00038 Score=74.91 Aligned_cols=256 Identities=9% Similarity=0.009 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcCCccc-HHHHHHHHHHhHhccCCCCC-C
Q 005912 30 TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAESYDR-VQDVAELLGMMVEDHKRLQP-N 106 (670)
Q Consensus 30 ~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~g~~~~-~~eAl~lf~eM~~~~~gi~P-d 106 (670)
...|+.+-..|.+.|++++|...|++... +.| +...|+.+-..|.+.| + .++|+..|++... +.| +
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~----l~P~~~~a~~~~g~~l~~~g---~d~~eAl~~~~~al~----l~P~~ 165 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIE----LNAANYTVWHFRRVLLKSLQ---KDLHEEMNYITAIIE----EQPKN 165 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTT---CCHHHHHHHHHHHHH----HCTTC
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHH----hCccCHHHHHHHHHHHHHcc---cCHHHHHHHHHHHHH----HCCCC
Confidence 45678888889999999999999999873 244 5788999999999999 6 8999999999987 345 5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCc
Q 005912 107 VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPR 186 (670)
Q Consensus 107 ~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~ 186 (670)
...|..+-.+|.+.|++++|+..|+.+.+..... +.+|+.+-.+|.+.|++++|+..|+.+.+.+. .+
T Consensus 166 ~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~---------~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P---~~ 233 (382)
T 2h6f_A 166 YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN---------YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV---RN 233 (382)
T ss_dssp HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT---TC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC---------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC---CC
Confidence 7889999999999999999999999998753221 22799999999999999999999999988763 22
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHc-CCcHHHH-----HHHHHHhccCCCCCCcccchhhhhHHHHH
Q 005912 187 AMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISE-GGLTGER-----KRWVPRRGKTPLDPDAVGFIYSNPMETSF 260 (670)
Q Consensus 187 ~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~-~g~~~~a-----~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv 260 (670)
.. .|+.+...+ .. .|..++| ...|+.... +.|+. ...|+.+-
T Consensus 234 ~~----a~~~lg~~l---------------------~~l~~~~~eA~~~~el~~~~~Al~--l~P~~-~~a~~~l~---- 281 (382)
T 2h6f_A 234 NS----VWNQRYFVI---------------------SNTTGYNDRAVLEREVQYTLEMIK--LVPHN-ESAWNYLK---- 281 (382)
T ss_dssp HH----HHHHHHHHH---------------------HHTTCSCSHHHHHHHHHHHHHHHH--HSTTC-HHHHHHHH----
T ss_pred HH----HHHHHHHHH---------------------HHhcCcchHHHHHHHHHHHHHHHH--HCCCC-HHHHHHHH----
Confidence 21 244433333 22 4443444 355555543 23543 23444333
Q ss_pred HHHHhcC--CHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccC-CHHHHHHHHHHH-HhCCC
Q 005912 261 KQRCLED--GKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAA-SKMVVSELKEEL-DAQGL 336 (670)
Q Consensus 261 ~~~~~~G--~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g-~~~~A~~l~~~M-~~~Gi 336 (670)
..|.+.| +.++|++++..+ .... .+...+..+...+.+.+.. .. ...+ ..++|..+++++ .+..
T Consensus 282 ~ll~~~g~~~~~~a~~~~~~~-~~~p-----~~~~al~~La~~~~~~~~~--~~---~~~~~~~~~A~~~~~~l~~~~D- 349 (382)
T 2h6f_A 282 GILQDRGLSKYPNLLNQLLDL-QPSH-----SSPYLIAFLVDIYEDMLEN--QC---DNKEDILNKALELCEILAKEKD- 349 (382)
T ss_dssp HHHTTTCGGGCHHHHHHHHHH-TTTC-----CCHHHHHHHHHHHHHHHHT--TC---SSHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHccCccchHHHHHHHHHh-ccCC-----CCHHHHHHHHHHHHHHhcc--cc---cchHHHHHHHHHHHHHHHHHhC-
Confidence 5566677 588999999887 2221 2445555555556554210 00 0112 258899999998 4432
Q ss_pred CCH-HHHHHHHHHHHHh
Q 005912 337 PTD-GTRNVLYQRVQKA 352 (670)
Q Consensus 337 p~d-~t~~~Ll~a~~~a 352 (670)
|.. ..|.-+...+...
T Consensus 350 P~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 350 TIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp GGGHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHH
Confidence 544 5666665555443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.0035 Score=67.56 Aligned_cols=172 Identities=11% Similarity=0.022 Sum_probs=105.1
Q ss_pred HHHhcCChHHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchh----CCCCCC-CCHHHH
Q 005912 4 EDCKAGDHSNALEIAYEMEAA--------GRMATTFHFNHLLSCQATCGIPEVAFATFENMEY----GEDYMK-PDTETY 70 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~--------Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~----~~~gi~-Pd~~ty 70 (670)
.|...|++++|++.|++-.+. ......++|+.+-..|...|++++|...|++... ...... ....+|
T Consensus 60 ~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~ 139 (472)
T 4g1t_A 60 LKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELD 139 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHH
Confidence 456789999999999875431 1233578999999999999999999999887642 011112 235666
Q ss_pred HHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCH-HHHHHHHH---HHHHcCCHHHHHHHHHHHHHccCCCccc---
Q 005912 71 NCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV-KTYALLVE---CFTKYCAVTEAIRHFRALQNYEGGTKVL--- 143 (670)
Q Consensus 71 n~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~-~Ty~~LL~---a~ak~g~~d~A~~lf~~M~~~g~~~~v~--- 143 (670)
+.+-.++.+.|. .+.++|+..|.+..+ +.|+. ..+..+.. .+...+..++|.+.++...+........
T Consensus 140 ~~~g~~~~~~~~-~~y~~A~~~~~kal~----~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~ 214 (472)
T 4g1t_A 140 CEEGWTRLKCGG-NQNERAKVCFEKALE----KKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVL 214 (472)
T ss_dssp HHHHHHHHHHCT-THHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHHHHcc-ccHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHH
Confidence 666556665542 147889999988766 34543 22322222 2344555566666665544432211000
Q ss_pred --------------------------ccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 144 --------------------------HNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 144 --------------------------~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
......+.+++.+-..|.+.|++++|...|+...+..
T Consensus 215 l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 277 (472)
T 4g1t_A 215 LALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI 277 (472)
T ss_dssp HHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC
Confidence 0001111267777778888888888888888776653
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00013 Score=77.17 Aligned_cols=236 Identities=8% Similarity=-0.071 Sum_probs=157.5
Q ss_pred HHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHchh--CCCC--CCCCHHHHHHHH
Q 005912 4 EDCKAGDHSNALEIAYEMEAA----GRMA-TTFHFNHLLSCQATCGIPEVAFATFENMEY--GEDY--MKPDTETYNCVI 74 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~----Gv~P-d~~tyn~LI~~yak~G~~e~A~~lf~~M~~--~~~g--i~Pd~~tyn~LI 74 (670)
.+...|++++|+..|++.... +-.+ ...+|+.+-..|...|+++.|...|++... ...+ ......+|+.+-
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 356789999999999998753 1111 346788888999999999999999988653 0111 112256788888
Q ss_pred HHHHHcCCcccHHHHHHHHHHhHhccCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----cCCCcccccC
Q 005912 75 QAYTRAESYDRVQDVAELLGMMVEDHKRLQPN----VKTYALLVECFTKYCAVTEAIRHFRALQNY----EGGTKVLHNE 146 (670)
Q Consensus 75 ~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd----~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~----g~~~~v~~~~ 146 (670)
..|...| +.++|+..|.+........ ++ ..+|..+-.+|...|++++|.+.|...... +..+..
T Consensus 192 ~~~~~~g---~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~---- 263 (383)
T 3ulq_A 192 TNFLDLK---QYEDAISHFQKAYSMAEAE-KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL---- 263 (383)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH----
T ss_pred HHHHHhc---CHHHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH----
Confidence 9999999 7888888888765410111 22 247888999999999999999999988762 110111
Q ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC-CCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcC
Q 005912 147 GNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPV-PPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEG 225 (670)
Q Consensus 147 g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i-~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~ 225 (670)
+.+++.+-..|.+.|++++|...|++..+..... .+.... .+.. +...+...
T Consensus 264 ---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~---------------------l~~~~~~~ 316 (383)
T 3ulq_A 264 ---PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLS---EFEF---------------------LKSLYLSG 316 (383)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH---HHHH---------------------HHHHHTSS
T ss_pred ---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH---HHHH---------------------HHHHHhCC
Confidence 1278999999999999999999998765432100 111110 0111 11223445
Q ss_pred Cc---HHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005912 226 GL---TGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNE 282 (670)
Q Consensus 226 g~---~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~ 282 (670)
|. ..+|..+++.... .|... ..+ ..+...|.+.|+.++|...|+.....
T Consensus 317 ~~~~~~~~al~~~~~~~~---~~~~~-~~~----~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 317 PDEEAIQGFFDFLESKML---YADLE-DFA----IDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp CCHHHHHHHHHHHHHTTC---HHHHH-HHH----HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCcC---HHHHH-HHH----HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 55 6777777776522 12210 112 23568899999999999999887643
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00047 Score=64.43 Aligned_cols=165 Identities=16% Similarity=0.108 Sum_probs=129.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCH
Q 005912 29 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV 107 (670)
Q Consensus 29 d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~ 107 (670)
++..|..|=..|.+.|++++|...|++..+ +.| +..+|..+-..|.+.| +.++|+..+...... ..-+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~~~---~~~~a~~~~~~~~~~---~~~~~ 73 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK----ADPNNVETLLKLGKTYMDIG---LPNDAIESLKKFVVL---DTTSA 73 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHH---CCCCH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhc---CchhH
Confidence 677899999999999999999999999763 233 6788999999999999 788999999988762 22356
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCch
Q 005912 108 KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRA 187 (670)
Q Consensus 108 ~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~ 187 (670)
..+..+-..+...++++.+...+......... .+.++..+-..|.+.|++++|...|++..+.+ |+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~----p~~ 140 (184)
T 3vtx_A 74 EAYYILGSANFMIDEKQAAIDALQRAIALNTV---------YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK----PGF 140 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---------chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc----chh
Confidence 77778888899999999999999998774321 12278889999999999999999999988764 222
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhcc
Q 005912 188 MILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGK 240 (670)
Q Consensus 188 ~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~ 240 (670)
.. .+..+... +...|..++|...|+...+
T Consensus 141 ~~---~~~~lg~~---------------------~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 141 IR---AYQSIGLA---------------------YEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HH---HHHHHHHH---------------------HHHTTCHHHHHHHHHHHHH
T ss_pred hh---HHHHHHHH---------------------HHHCCCHHHHHHHHHHHHh
Confidence 11 23333333 3667889999999988755
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=97.98 E-value=3.9e-05 Score=75.85 Aligned_cols=173 Identities=11% Similarity=0.015 Sum_probs=126.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHchhC-----CCCCCCCHHHH
Q 005912 3 AEDCKAGDHSNALEIAYEMEAA------GRMA-TTFHFNHLLSCQATCGIPEVAFATFENMEYG-----EDYMKPDTETY 70 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~------Gv~P-d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~-----~~gi~Pd~~ty 70 (670)
..|...|++++|+..|.+.... +-.| ...+|+.+-..|...|++++|...|++.... ...-.....+|
T Consensus 51 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 130 (283)
T 3edt_B 51 LVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQL 130 (283)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 4677899999999999988754 2223 4667899999999999999999999987630 01112246788
Q ss_pred HHHHHHHHHcCCcccHHHHHHHHHHhHhcc---C-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC------
Q 005912 71 NCVIQAYTRAESYDRVQDVAELLGMMVEDH---K-RLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGG------ 139 (670)
Q Consensus 71 n~LI~ay~k~g~~~~~~eAl~lf~eM~~~~---~-gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~------ 139 (670)
..+-..|...| +.++|+..|.+..... . +-.| ...+|..+-.+|.+.|++++|..+|....+....
T Consensus 131 ~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 207 (283)
T 3edt_B 131 NNLALLCQNQG---KAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSV 207 (283)
T ss_dssp HHHHHHHHTTT---CHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 99999999999 7889999998886510 0 1133 3567888999999999999999999988763100
Q ss_pred -Ccc-----------------------------cccC-CCCch---HHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005912 140 -TKV-----------------------------LHNE-GNFGD---PLSLYLRALCREGRIIELLEALEAMAK 178 (670)
Q Consensus 140 -~~v-----------------------------~~~~-g~~pd---tyn~LI~ay~k~G~~eeA~~vf~~M~~ 178 (670)
+.. .... ...|. +|..|-..|.+.|++++|..+|++..+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 208 NGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 000 0000 01122 788899999999999999999998654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00024 Score=82.95 Aligned_cols=153 Identities=13% Similarity=0.158 Sum_probs=126.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHc
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMA-TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRA 80 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~P-d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~ 80 (670)
..|.+.|++++|+..|++..+. .| +...|+.|=..|.+.|++++|...|++..+ +.| +...|+.|=..|.+.
T Consensus 17 ~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~----l~P~~~~a~~nLg~~l~~~ 90 (723)
T 4gyw_A 17 NIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR----ISPTFADAYSNMGNTLKEM 90 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHc
Confidence 3577899999999999988764 34 578889999999999999999999998763 244 478899999999999
Q ss_pred CCcccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHH
Q 005912 81 ESYDRVQDVAELLGMMVEDHKRLQPN-VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRA 159 (670)
Q Consensus 81 g~~~~~~eAl~lf~eM~~~~~gi~Pd-~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~a 159 (670)
| +.++|++.|++..+ +.|+ ...|+.+-.+|.+.|++++|...|+...+.... .+..|..|...
T Consensus 91 g---~~~~A~~~~~kAl~----l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~---------~~~a~~~L~~~ 154 (723)
T 4gyw_A 91 Q---DVQGALQCYTRAIQ----INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD---------FPDAYCNLAHC 154 (723)
T ss_dssp T---CHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---------CHHHHHHHHHH
T ss_pred C---CHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------ChHHHhhhhhH
Confidence 9 78899999999876 3564 678999999999999999999999998875321 12288999999
Q ss_pred HHHcCCHHHHHHHHHHHh
Q 005912 160 LCREGRIIELLEALEAMA 177 (670)
Q Consensus 160 y~k~G~~eeA~~vf~~M~ 177 (670)
|.+.|++++|.+.|++..
T Consensus 155 l~~~g~~~~A~~~~~kal 172 (723)
T 4gyw_A 155 LQIVCDWTDYDERMKKLV 172 (723)
T ss_dssp HHHTTCCTTHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHH
Confidence 999999999888887654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00019 Score=79.19 Aligned_cols=214 Identities=10% Similarity=-0.065 Sum_probs=157.3
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcCCcccHHH
Q 005912 11 HSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIP-EVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAESYDRVQD 88 (670)
Q Consensus 11 ~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~-e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~g~~~~~~e 88 (670)
+++++..+...... -..+...|..+-..|...|++ ++|...|++... +.| +...|+.+-..|.+.| +.++
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~----~~p~~~~a~~~lg~~~~~~g---~~~~ 155 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK----LEPELVEAWNQLGEVYWKKG---DVTS 155 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHT---CHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh----hCCCCHHHHHHHHHHHHHcC---CHHH
Confidence 56667777665532 234788888888999999999 999999999763 134 4789999999999999 8899
Q ss_pred HHHHHHHhHhccCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHH
Q 005912 89 VAELLGMMVEDHKRLQPNVKTYALLVECFTKY---------CAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRA 159 (670)
Q Consensus 89 Al~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~---------g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~a 159 (670)
|+..|.+..+ +.|+..+|..+-.+|... |++++|...|+...+.... .+..|+.+-.+
T Consensus 156 A~~~~~~al~----~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~lg~~ 222 (474)
T 4abn_A 156 AHTCFSGALT----HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL---------DGRSWYILGNA 222 (474)
T ss_dssp HHHHHHHHHT----TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT---------CHHHHHHHHHH
T ss_pred HHHHHHHHHh----hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC---------CHHHHHHHHHH
Confidence 9999999977 468888899999999999 9999999999998875322 12278889999
Q ss_pred HHHc--------CCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHH
Q 005912 160 LCRE--------GRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGER 231 (670)
Q Consensus 160 y~k~--------G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a 231 (670)
|... |++++|...|+...+.... .++... .|..+... +...|..++|
T Consensus 223 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~---~~~~lg~~---------------------~~~~g~~~~A 277 (474)
T 4abn_A 223 YLSLYFNTGQNPKISQQALSAYAQAEKVDRK-ASSNPD---LHLNRATL---------------------HKYEESYGEA 277 (474)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG-GGGCHH---HHHHHHHH---------------------HHHTTCHHHH
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHhCCC-cccCHH---HHHHHHHH---------------------HHHcCCHHHH
Confidence 9988 9999999999998775310 002211 23333332 3667899999
Q ss_pred HHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHH
Q 005912 232 KRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLR 277 (670)
Q Consensus 232 ~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~ 277 (670)
...|+..... .|+. ...+.. +...+...|+.++|+..+.
T Consensus 278 ~~~~~~al~l--~p~~-~~a~~~----l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 278 LEGFSQAAAL--DPAW-PEPQQR----EQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHH--CTTC-HHHHHH----HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHh--CCCC-HHHHHH----HHHHHHHHHHHHHHHHHhc
Confidence 9999887653 2443 122322 3366677777777776543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00064 Score=75.51 Aligned_cols=152 Identities=12% Similarity=0.062 Sum_probs=119.5
Q ss_pred cCChH-------HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC--HHHHHHHHHHH
Q 005912 8 AGDHS-------NALEIAYEMEAAGRMA-TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD--TETYNCVIQAY 77 (670)
Q Consensus 8 ~G~~~-------~Al~lf~~M~~~Gv~P-d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd--~~tyn~LI~ay 77 (670)
.|+++ +|+.+|++-.+. +.| +...|..+...+.+.|++++|..+|++... +.|+ ...|..+...+
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~-~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~ 366 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA----IEDIDPTLVYIQYMKFA 366 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTT-TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----SSSSCHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC----ccccCchHHHHHHHHHH
Confidence 68877 899999888752 334 688999999999999999999999999883 3454 35899999999
Q ss_pred HHcCCcccHHHHHHHHHHhHhccCCCCCC-HHHHHH-HHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHH
Q 005912 78 TRAESYDRVQDVAELLGMMVEDHKRLQPN-VKTYAL-LVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL 155 (670)
Q Consensus 78 ~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd-~~Ty~~-LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~ 155 (670)
.+.| +.++|..+|.+-.+ . .|+ ...|.. ....+...|+.++|..+|+...+..+ ..++.|..
T Consensus 367 ~~~~---~~~~A~~~~~~Al~--~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p---------~~~~~~~~ 430 (530)
T 2ooe_A 367 RRAE---GIKSGRMIFKKARE--D--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG---------DIPEYVLA 430 (530)
T ss_dssp HHHH---HHHHHHHHHHHHHT--C--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT---------TCHHHHHH
T ss_pred HHhc---CHHHHHHHHHHHHh--c--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC---------CCHHHHHH
Confidence 9999 89999999999876 2 232 233322 22234469999999999998877532 12338999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 156 YLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 156 LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
++..+.+.|+.++|..+|+.....+
T Consensus 431 ~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 431 YIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 9999999999999999999998875
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00033 Score=68.07 Aligned_cols=145 Identities=13% Similarity=0.026 Sum_probs=113.2
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcCC
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAES 82 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~g~ 82 (670)
.|.+.|++++|+..|++.....-.++...+..+-..|.+.|++++|...|++... ..| +...|..+-..|.+.|
T Consensus 16 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~~- 90 (228)
T 4i17_A 16 DALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK----KNYNLANAYIGKSAAYRDMK- 90 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCSHHHHHHHHHHHHHHTT-
T ss_pred HHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH----hCcchHHHHHHHHHHHHHcc-
Confidence 5678999999999999988765446777777799999999999999999999873 234 5678999999999999
Q ss_pred cccHHHHHHHHHHhHhccCCCCCC-H-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQPN-V-------KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLS 154 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~Pd-~-------~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn 154 (670)
+.++|+..|.+..+ +.|+ . .+|..+-..+.+.|++++|...|....+....... +.+|.
T Consensus 91 --~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~~~~ 157 (228)
T 4i17_A 91 --NNQEYIATLTEGIK----AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWK-------TDALY 157 (228)
T ss_dssp --CHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHH-------HHHHH
T ss_pred --cHHHHHHHHHHHHH----HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCccc-------HHHHH
Confidence 78999999999877 3454 3 45777778888999999999999998874221001 12677
Q ss_pred HHHHHHHHcCCH
Q 005912 155 LYLRALCREGRI 166 (670)
Q Consensus 155 ~LI~ay~k~G~~ 166 (670)
.+-..|...|+.
T Consensus 158 ~l~~~~~~~~~~ 169 (228)
T 4i17_A 158 SLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777666654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00019 Score=79.26 Aligned_cols=159 Identities=11% Similarity=0.011 Sum_probs=132.5
Q ss_pred HHHhcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHc--
Q 005912 4 EDCKAGDH-SNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA-- 80 (670)
Q Consensus 4 ~y~k~G~~-~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~-- 80 (670)
.|...|++ ++|+..|++..+.. .-+...|+.|-..|.+.|++++|...|++... +.|+...|..+-..|.+.
T Consensus 111 ~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~lg~~~~~~~~ 185 (474)
T 4abn_A 111 ALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALT----HCKNKVSLQNLSMVLRQLQT 185 (474)
T ss_dssp HHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT----TCCCHHHHHHHHHHHTTCCC
T ss_pred HHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCCCHHHHHHHHHHHHHhcc
Confidence 56678999 99999999988752 23588999999999999999999999999883 358888999999999988
Q ss_pred -------CCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHccCCCcccc
Q 005912 81 -------ESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKY--------CAVTEAIRHFRALQNYEGGTKVLH 144 (670)
Q Consensus 81 -------g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~--------g~~d~A~~lf~~M~~~g~~~~v~~ 144 (670)
| +.++|+..|.+..+ +.| +...|..+-.+|... |++++|...|+...+....
T Consensus 186 ~~~~~~~g---~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----- 253 (474)
T 4abn_A 186 DSGDEHSR---HVMDSVRQAKLAVQ----MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK----- 253 (474)
T ss_dssp SCHHHHHH---HHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG-----
T ss_pred CChhhhhh---hHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC-----
Confidence 8 88999999999887 235 478889999999998 9999999999999875320
Q ss_pred cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 145 NEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 145 ~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
....+..|..+-..|.+.|++++|...|++..+..
T Consensus 254 -~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 254 -ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp -GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 00112289999999999999999999999987764
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0013 Score=69.44 Aligned_cols=300 Identities=7% Similarity=-0.075 Sum_probs=179.2
Q ss_pred HHHhcCChHHHHHHHHHHHHc--CCC--CCHHHHHHHHHHHH--HcCChHHHH-----------HHHHHchhCCCCCCCC
Q 005912 4 EDCKAGDHSNALEIAYEMEAA--GRM--ATTFHFNHLLSCQA--TCGIPEVAF-----------ATFENMEYGEDYMKPD 66 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~--Gv~--Pd~~tyn~LI~~ya--k~G~~e~A~-----------~lf~~M~~~~~gi~Pd 66 (670)
.+.+.+++++|..++++..+. .+. ++...|-.|+..-. -.+.++.+. .+|+.+.. .|+
T Consensus 21 ~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~-----~~~ 95 (383)
T 3ulq_A 21 MYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDK-----KQA 95 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHH-----HTH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHh-----cCC
Confidence 356889999999999998754 232 34444444444321 223344444 67777652 111
Q ss_pred H-HH----HH--HHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005912 67 T-ET----YN--CVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN----VKTYALLVECFTKYCAVTEAIRHFRALQN 135 (670)
Q Consensus 67 ~-~t----yn--~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd----~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~ 135 (670)
. .. |- ..-..+...| +.++|+..|.+....... .|| ..+|..+-..|...|+++.|...+.....
T Consensus 96 ~~~~~l~~~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~~~-~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~ 171 (383)
T 3ulq_A 96 RLTGLLEYYFNFFRGMYELDQR---EYLSAIKFFKKAESKLIF-VKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYE 171 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTGGG-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 11 11 1233456778 788999999988652111 233 35788888999999999999999998775
Q ss_pred ccCCCcccccCCC-Cc---hHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHc
Q 005912 136 YEGGTKVLHNEGN-FG---DPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAEL 211 (670)
Q Consensus 136 ~g~~~~v~~~~g~-~p---dtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~ 211 (670)
.-... +. .+ .+++.+-..|...|++++|...|++..+.... ..+....+.++..+..
T Consensus 172 ~~~~~------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~lg~------------ 232 (383)
T 3ulq_A 172 IYKEH------EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEA-EKQPQLMGRTLYNIGL------------ 232 (383)
T ss_dssp HHHTC------STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH------------
T ss_pred HHHhC------ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHH------------
Confidence 31110 00 01 17888889999999999999999876543211 1222211222333322
Q ss_pred CCCHHHHHHHHHcCCcHHHHHHHHHHhccC----CCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc
Q 005912 212 GYEIDYIARYISEGGLTGERKRWVPRRGKT----PLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVL 287 (670)
Q Consensus 212 G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~----gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~ 287 (670)
.+...|..++|...|+..... +-.|.. ..++. .+...|.+.|+.++|...|++.....-..
T Consensus 233 ---------~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~----~l~~~~~~~g~~~~A~~~~~~al~~~~~~- 297 (383)
T 3ulq_A 233 ---------CKNSQSQYEDAIPYFKRAIAVFEESNILPSL-PQAYF----LITQIHYKLGKIDKAHEYHSKGMAYSQKA- 297 (383)
T ss_dssp ---------HHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH-HHHHH----HHHHHHHHTTCHHHHHHHHHHHHHHHHHH-
T ss_pred ---------HHHHCCCHHHHHHHHHHHHHHHHhhccchhH-HHHHH----HHHHHHHHCCCHHHHHHHHHHHHHHHHHc-
Confidence 236678889998888776541 111221 12232 35588899999999999998876542210
Q ss_pred CCCCHHHHHHHHHHHHHccCCCcccccccccCC---HHHHHHHHHHHHhCCC-CCH-HHHHHHHHHHHHhCChhhhhcC
Q 005912 288 GDVSESDYVRVEERLKKLIKGPEQHVLKPKAAS---KMVVSELKEELDAQGL-PTD-GTRNVLYQRVQKARRINRSRGR 361 (670)
Q Consensus 288 g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~---~~~A~~l~~~M~~~Gi-p~d-~t~~~Ll~a~~~aG~~~eA~~~ 361 (670)
.+...... +..+...- ...|. ..+|..+++.. +. |.. ..+..|-..+...|+.++|...
T Consensus 298 --~~~~~~~~-~~~l~~~~---------~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~ 361 (383)
T 3ulq_A 298 --GDVIYLSE-FEFLKSLY---------LSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAY 361 (383)
T ss_dssp --TCHHHHHH-HHHHHHHH---------TSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --CCHHHHHH-HHHHHHHH---------hCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 11111111 22222211 13344 56666666654 55 333 5777889999999999998743
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00099 Score=70.37 Aligned_cols=236 Identities=8% Similarity=-0.008 Sum_probs=155.2
Q ss_pred HHhcCChHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHchh--CCCC-CCC-CHHHHHHHHH
Q 005912 5 DCKAGDHSNALEIAYEMEAAG-RMAT----TFHFNHLLSCQATCGIPEVAFATFENMEY--GEDY-MKP-DTETYNCVIQ 75 (670)
Q Consensus 5 y~k~G~~~~Al~lf~~M~~~G-v~Pd----~~tyn~LI~~yak~G~~e~A~~lf~~M~~--~~~g-i~P-d~~tyn~LI~ 75 (670)
+...|++++|+..|++....- -.++ ..+|+.|-..|...|+++.|...|++... ...+ ..+ ...+|+.+=.
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 467899999999999887531 1133 45778888899999999999998887652 0111 111 3567888999
Q ss_pred HHHHcCCcccHHHHHHHHHHhHhcc--CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcc---CCCcccccCCCC
Q 005912 76 AYTRAESYDRVQDVAELLGMMVEDH--KRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYE---GGTKVLHNEGNF 149 (670)
Q Consensus 76 ay~k~g~~~~~~eAl~lf~eM~~~~--~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g---~~~~v~~~~g~~ 149 (670)
.|...| +.++|++.|.+..... .+-.+ ...+|..+-.+|...|++++|.+.|....... ..+..
T Consensus 191 ~y~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~------- 260 (378)
T 3q15_A 191 NYDDFK---HYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL------- 260 (378)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-------
T ss_pred HHHHhC---CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-------
Confidence 999999 7788888887765410 11111 23567888889999999999999999887621 00111
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCc--
Q 005912 150 GDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGL-- 227 (670)
Q Consensus 150 pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~-- 227 (670)
+.++..+-..|.+.|+.++|...|++..+......... +...+.. +...+...+.
T Consensus 261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------~~~~~~~-----------------l~~ly~~~~~~~ 317 (378)
T 3q15_A 261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKF------YKELFLF-----------------LQAVYKETVDER 317 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSC------HHHHHHH-----------------HHHHHSSSCCHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH------HHHHHHH-----------------HHHHHhCCCcHH
Confidence 12788899999999999999999998766432211111 1111111 1112234444
Q ss_pred -HHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005912 228 -TGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQN 281 (670)
Q Consensus 228 -~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~ 281 (670)
..++..+++.... .|+. . .+...+...|...|+.++|...|+....
T Consensus 318 ~~~~al~~~~~~~~---~~~~--~---~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 318 KIHDLLSYFEKKNL---HAYI--E---ACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHTTC---HHHH--H---HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC---hhHH--H---HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6667777766322 1222 1 1112456888999999999999987753
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.001 Score=66.18 Aligned_cols=162 Identities=15% Similarity=0.044 Sum_probs=122.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC-HHHHHHHHHHH
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMAT----TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD-TETYNCVIQAY 77 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd----~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd-~~tyn~LI~ay 77 (670)
..+.+.|++++|+..|++..... |+ ...+..+-..|.+.|++++|...|++... ...-.|. ...|..+-.+|
T Consensus 23 ~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~-~~p~~~~~~~a~~~lg~~~ 99 (261)
T 3qky_A 23 MEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQ-IYQIDPRVPQAEYERAMCY 99 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCTTHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHH-HCCCCchhHHHHHHHHHHH
Confidence 35678999999999999998752 33 56778888899999999999999999874 1111223 45677777788
Q ss_pred HH--------cCCcccHHHHHHHHHHhHhccCCCCCCH-HHH-----------------HHHHHHHHHcCCHHHHHHHHH
Q 005912 78 TR--------AESYDRVQDVAELLGMMVEDHKRLQPNV-KTY-----------------ALLVECFTKYCAVTEAIRHFR 131 (670)
Q Consensus 78 ~k--------~g~~~~~~eAl~lf~eM~~~~~gi~Pd~-~Ty-----------------~~LL~a~ak~g~~d~A~~lf~ 131 (670)
.+ .| +.++|+..|.+.... .|+. ... -.+-..|.+.|+++.|...|+
T Consensus 100 ~~~~~~~~~~~~---~~~~A~~~~~~~l~~----~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 172 (261)
T 3qky_A 100 YKLSPPYELDQT---DTRKAIEAFQLFIDR----YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE 172 (261)
T ss_dssp HHHCCCTTSCCH---HHHHHHHHHHHHHHH----CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhcccccccch---hHHHHHHHHHHHHHH----CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 88 88 899999999998872 3432 222 445677889999999999999
Q ss_pred HHHHccCCCcccccCCCCchHHHHHHHHHHHc----------CCHHHHHHHHHHHhhCC
Q 005912 132 ALQNYEGGTKVLHNEGNFGDPLSLYLRALCRE----------GRIIELLEALEAMAKDN 180 (670)
Q Consensus 132 ~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~----------G~~eeA~~vf~~M~~~g 180 (670)
.+.+....... .+..+..+-.+|.+. |++++|...|+...+..
T Consensus 173 ~~l~~~p~~~~------~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 173 AVFDAYPDTPW------ADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHCTTSTT------HHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCCch------HHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 99875432211 122677788888866 89999999999988764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=97.72 E-value=0.015 Score=60.50 Aligned_cols=277 Identities=10% Similarity=-0.057 Sum_probs=164.7
Q ss_pred HHHHHHHcCChHHHHHHHHHchhCCCCCCCCH----HHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCH----
Q 005912 36 LLSCQATCGIPEVAFATFENMEYGEDYMKPDT----ETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV---- 107 (670)
Q Consensus 36 LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~----~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~---- 107 (670)
+-..+...|++++|...+++... ... ..+. .+++.+-..|...| +.++|...|.+....... .++.
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~-~~~-~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~-~~~~~~~~ 93 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALE-ELP-PGWFYSRIVATSVLGEVLHCKG---ELTRSLALMQQTEQMARQ-HDVWHYAL 93 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH-TCC-TTCHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHH-TTCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH-cCC-CCchhHHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHHh-cCcHHHHH
Confidence 33456678999999999998663 221 2222 25667777888899 788888888876541011 1222
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCC-Cch---HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC
Q 005912 108 KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGN-FGD---PLSLYLRALCREGRIIELLEALEAMAKDNQPV 183 (670)
Q Consensus 108 ~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~-~pd---tyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i 183 (670)
.++..+-..+...|++++|...+.......... .+. .|. +++.+-..|...|++++|...+++........
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 168 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQ-----HLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY 168 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----TCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh-----ccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc
Confidence 345667778889999999999999877532100 000 011 66778888999999999999999876543221
Q ss_pred CCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhH-HHHHHH
Q 005912 184 PPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPM-ETSFKQ 262 (670)
Q Consensus 184 ~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LI-e~lv~~ 262 (670)
.+.... .++..+... +...|..++|..+++......-.++. +..+...+ ......
T Consensus 169 ~~~~~~--~~~~~la~~---------------------~~~~g~~~~A~~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~~ 224 (373)
T 1hz4_A 169 QPQQQL--QCLAMLIQC---------------------SLARGDLDNARSQLNRLENLLGNGKY-HSDWISNANKVRVIY 224 (373)
T ss_dssp CGGGGH--HHHHHHHHH---------------------HHHHTCHHHHHHHHHHHHHHHTTSCC-CHHHHHHHHHHHHHH
T ss_pred CcHHHH--HHHHHHHHH---------------------HHHcCCHHHHHHHHHHHHHHHhccCc-chhHHHHHHHHHHHH
Confidence 222111 123222222 35567889999888876432111111 01122211 112244
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHHh----CCCCC
Q 005912 263 RCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDA----QGLPT 338 (670)
Q Consensus 263 ~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~----~Gip~ 338 (670)
+...|+.+.|..++.......... +......+..+-..+. ..|+.++|..+++.... .|.+.
T Consensus 225 ~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~la~~~~-------------~~g~~~~A~~~l~~a~~~~~~~~~~~ 290 (373)
T 1hz4_A 225 WQMTGDKAAAANWLRHTAKPEFAN-NHFLQGQWRNIARAQI-------------LLGEFEPAEIVLEELNENARSLRLMS 290 (373)
T ss_dssp HHHTTCHHHHHHHHHHSCCCCCTT-CGGGHHHHHHHHHHHH-------------HTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHCCCHHHHHHHHHhCCCCCCCc-chhhHHHHHHHHHHHH-------------HcCCHHHHHHHHHHHHHHHHhCcchh
Confidence 778999999999998875432110 0001111111112222 45778889888887643 34332
Q ss_pred H--HHHHHHHHHHHHhCChhhhhcC
Q 005912 339 D--GTRNVLYQRVQKARRINRSRGR 361 (670)
Q Consensus 339 d--~t~~~Ll~a~~~aG~~~eA~~~ 361 (670)
. ..+..+-.++...|+.++|...
T Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~ 315 (373)
T 1hz4_A 291 DLNRNLLLLNQLYWQAGRKSDAQRV 315 (373)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3 3666677788899999988753
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0019 Score=67.49 Aligned_cols=164 Identities=15% Similarity=0.032 Sum_probs=118.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC-----CHHHHHHHHHH
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGR-MATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP-----DTETYNCVIQA 76 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv-~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P-----d~~tyn~LI~a 76 (670)
..|...|++++|++++.+-...|- .-+...+-.++..|.+.|+++.|.+.|++|.+ ..| +-.+...|..+
T Consensus 108 ~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~----~~~d~~~~~d~~l~~Laea 183 (310)
T 3mv2_B 108 TAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN----AIEDTVSGDNEMILNLAES 183 (310)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCccccccchHHHHHHHHH
Confidence 457788999999999998765543 23677888999999999999999999999984 356 25566666666
Q ss_pred HHH---cCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCccccc---CCCCc
Q 005912 77 YTR---AESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHN---EGNFG 150 (670)
Q Consensus 77 y~k---~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~---~g~~p 150 (670)
++. .|. +..+|+.+|+++.. -.|+..+-..+++++.+.|++++|.++++.+.+.-.. +-.. ....|
T Consensus 184 ~v~l~~g~~--~~q~A~~~f~El~~----~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~--~~~k~~~~p~~~ 255 (310)
T 3mv2_B 184 YIKFATNKE--TATSNFYYYEELSQ----TFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYS--VEQKENAVLYKP 255 (310)
T ss_dssp HHHHHHTCS--TTTHHHHHHHHHHT----TSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHH--TTTCHHHHSSHH
T ss_pred HHHHHhCCc--cHHHHHHHHHHHHH----hCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccc--ccccccCCCCCH
Confidence 433 332 68899999999976 2477666677777999999999999999977653100 0000 01123
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 151 DPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 151 dtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
++.-.+|..+...|+ +|.+++.++.+..
T Consensus 256 ~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 256 TFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 366555666666776 8999999998875
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0022 Score=61.06 Aligned_cols=138 Identities=10% Similarity=-0.000 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHH
Q 005912 31 FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 110 (670)
Q Consensus 31 ~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty 110 (670)
..+..+-..|...|++++|...|++.. .|+...|..+-..|.+.| +.++|+..|.+... .. ..+...|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~------~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~--~~-~~~~~~~ 74 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ------DPHSRICFNIGCMYTILK---NMTEAEKAFTRSIN--RD-KHLAVAY 74 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS------SCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH--HC-TTCHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc------CCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHH--hC-ccchHHH
Confidence 345566677889999999999999886 678999999999999999 78899999999876 22 3357889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccc--cCC--CCc---hHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 111 ALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLH--NEG--NFG---DPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 111 ~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~--~~g--~~p---dtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
..+-.+|.+.|++++|.+.|....+......... ..| ..| .+|..+-..|.+.|++++|...|+...+..
T Consensus 75 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 75 FQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999987543221000 000 111 278889999999999999999999987765
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0026 Score=64.93 Aligned_cols=218 Identities=10% Similarity=-0.018 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHchhC--CCCCCCC-HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhcc--CCCCC-
Q 005912 32 HFNHLLSCQATCGIPEVAFATFENMEYG--EDYMKPD-TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDH--KRLQP- 105 (670)
Q Consensus 32 tyn~LI~~yak~G~~e~A~~lf~~M~~~--~~gi~Pd-~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~--~gi~P- 105 (670)
.|+-....|...|++++|...|++.... ..+-.++ ..+|+.+-..|.+.| +.++|+..|.+-.... .|-.+
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g---~~~~A~~~~~~Al~l~~~~g~~~~ 115 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG---NSVNAVDSLENAIQIFTHRGQFRR 115 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHcCCHHH
Confidence 3444566788999999999999876520 1121122 578999999999999 7888888887765410 11000
Q ss_pred CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC
Q 005912 106 NVKTYALLVECFTKY-CAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVP 184 (670)
Q Consensus 106 d~~Ty~~LL~a~ak~-g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~ 184 (670)
-..+|+.+-..|... |++++|...|+..........-. .....+|+.+-..|.+.|++++|...|+...+.... .
T Consensus 116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~ 191 (292)
T 1qqe_A 116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV---ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG-N 191 (292)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS-C
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh---HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-C
Confidence 145788888999996 99999999999887632110000 000116888999999999999999999998876532 1
Q ss_pred Cch-HHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHH
Q 005912 185 PRA-MILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQR 263 (670)
Q Consensus 185 p~~-~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~ 263 (670)
+.. ......|..+.. .+...|..++|...|+..... .|+.....-+..+..+...|
T Consensus 192 ~~~~~~~~~~~~~lg~---------------------~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~ 248 (292)
T 1qqe_A 192 RLSQWSLKDYFLKKGL---------------------CQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAV 248 (292)
T ss_dssp TTTGGGHHHHHHHHHH---------------------HHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHH---------------------HHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHH
Confidence 111 000001222221 135567899999999887652 24321110111222333444
Q ss_pred H--hcCCHHHHHHHHHHH
Q 005912 264 C--LEDGKKYHRKLLRTL 279 (670)
Q Consensus 264 ~--~~G~~e~A~~Lf~~M 279 (670)
. ..+++++|+..|+.+
T Consensus 249 ~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 249 NEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HTTCTTTHHHHHHHHTTS
T ss_pred HcCCHHHHHHHHHHhccC
Confidence 3 456677887777544
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0014 Score=76.50 Aligned_cols=132 Identities=14% Similarity=0.146 Sum_probs=113.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC-
Q 005912 29 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN- 106 (670)
Q Consensus 29 d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd- 106 (670)
+...|+.|=..|.+.|++++|...|++..+ +.| +...|+.|=..|.+.| +.++|+..|++..+ +.|+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~----l~P~~~~a~~nLg~~l~~~g---~~~eA~~~~~~Al~----l~P~~ 76 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE----VFPEFAAAHSNLASVLQQQG---KLQEALMHYKEAIR----ISPTF 76 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HCTTC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH----hCCCC
Confidence 366889999999999999999999999763 245 4788999999999999 89999999999877 4565
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 107 VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 107 ~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
...|..+-.+|.+.|++++|.+.|+...+.... .+.+|+.|-..|.+.|++++|...|++..+.+
T Consensus 77 ~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~---------~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~ 141 (723)
T 4gyw_A 77 ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA---------FADAHSNLASIHKDSGNIPEAIASYRTALKLK 141 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 688999999999999999999999998875321 12289999999999999999999999987754
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0027 Score=62.00 Aligned_cols=164 Identities=12% Similarity=0.030 Sum_probs=117.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCC-CCC-HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCH-HHHHHHHHHHHH
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGR-MAT-TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT-ETYNCVIQAYTR 79 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv-~Pd-~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~-~tyn~LI~ay~k 79 (670)
..+.+.|++++|+..|+++....- .|. ...+..+-.+|.+.|++++|...|++... ...-.+.. ..|-.+-.+|.+
T Consensus 12 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~-~~P~~~~~~~a~~~~g~~~~~ 90 (225)
T 2yhc_A 12 QQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR-LNPTHPNIDYVMYMRGLTNMA 90 (225)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HCcCCCcHHHHHHHHHHHHHh
Confidence 357789999999999999987421 122 35677788999999999999999999873 11112222 234434444443
Q ss_pred ------------------cCCcccHHHHHHHHHHhHhccCCCCCCHH-HH-----------------HHHHHHHHHcCCH
Q 005912 80 ------------------AESYDRVQDVAELLGMMVEDHKRLQPNVK-TY-----------------ALLVECFTKYCAV 123 (670)
Q Consensus 80 ------------------~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~-Ty-----------------~~LL~a~ak~g~~ 123 (670)
.| +.++|+..|.+..+ ..|+.. ++ -.+-..|.+.|++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~l~----~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~ 163 (225)
T 2yhc_A 91 LDDSALQGFFGVDRSDRDPQ---QARAAFSDFSKLVR----GYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAW 163 (225)
T ss_dssp HHC--------------CCH---HHHHHHHHHHHHHT----TCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred hhhhhhhhhhccchhhcCcH---HHHHHHHHHHHHHH----HCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 34 78999999999986 235432 21 2344567899999
Q ss_pred HHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 124 TEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 124 d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
+.|...|+.+.+..+..... ++.+..+..+|.+.|+.++|...|+.+...+
T Consensus 164 ~~A~~~~~~~l~~~p~~~~~------~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 164 VAVVNRVEGMLRDYPDTQAT------RDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHHHSTTSHHH------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCcCCCcc------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 99999999998753322111 1268889999999999999999999988875
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.029 Score=58.97 Aligned_cols=305 Identities=8% Similarity=-0.039 Sum_probs=174.4
Q ss_pred HHhcCChHHHHHHHHHHHHc--CC--CCCHHHHHHHHHHHH--HcCChHHHH---------HHHHHchhCCCCCCC-C-H
Q 005912 5 DCKAGDHSNALEIAYEMEAA--GR--MATTFHFNHLLSCQA--TCGIPEVAF---------ATFENMEYGEDYMKP-D-T 67 (670)
Q Consensus 5 y~k~G~~~~Al~lf~~M~~~--Gv--~Pd~~tyn~LI~~ya--k~G~~e~A~---------~lf~~M~~~~~gi~P-d-~ 67 (670)
+.+.+++++|..++++.... .+ .+++..|-.|+..-. -.+.+..+. ..++.+.. .. .| + .
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~--~~-~~~~~~ 98 (378)
T 3q15_A 22 MIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIET--PQ-KKLTGL 98 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHG--GG-HHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhc--cC-CCCccH
Confidence 37889999999999987653 22 234444455544311 112222222 56666541 00 11 1 1
Q ss_pred -HHHHH--HHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCC
Q 005912 68 -ETYNC--VIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN----VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGT 140 (670)
Q Consensus 68 -~tyn~--LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd----~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~ 140 (670)
..|-. .=..+...| +.++|+..|.+.... ..-.+| ..+|..+-..|...|+++.|...+..........
T Consensus 99 l~~~~~~~~g~~~~~~g---~~~~A~~~~~~al~~-~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~ 174 (378)
T 3q15_A 99 LKYYSLFFRGMYEFDQK---EYVEAIGYYREAEKE-LPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH 174 (378)
T ss_dssp HHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTT-GGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHH-HhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC
Confidence 11111 222345678 788999999988752 111233 4577888889999999999999998877531110
Q ss_pred cccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 005912 141 KVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIAR 220 (670)
Q Consensus 141 ~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~ 220 (670)
.-. ......+++.+=..|...|++++|...|++..+..... .+....+.++..+-..
T Consensus 175 ~~~--~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~lg~~-------------------- 231 (378)
T 3q15_A 175 PLY--SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI-QNDRFIAISLLNIANS-------------------- 231 (378)
T ss_dssp TTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--------------------
T ss_pred CCc--hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH--------------------
Confidence 000 00001178889999999999999999998765421110 1111111223333222
Q ss_pred HHHcCCcHHHHHHHHHHhccCC---CCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHH
Q 005912 221 YISEGGLTGERKRWVPRRGKTP---LDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVR 297 (670)
Q Consensus 221 ~~~~~g~~~~a~~lf~~m~~~g---i~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~ 297 (670)
+...|..++|...|+...... ..|.. ..++ ..+...|.+.|+.++|..+|++.....-.. +.+....
T Consensus 232 -y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~--- 301 (378)
T 3q15_A 232 -YDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVL----FGLSWTLCKAGQTQKAFQFIEEGLDHITAR-SHKFYKE--- 301 (378)
T ss_dssp -HHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHH----HHHHHHHHHTTCHHHHHHHHHHHHHHCCTT-CCSCHHH---
T ss_pred -HHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHH----HHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-CCHHHHH---
Confidence 355678888888887765410 11221 1222 245588899999999999999887654331 1122222
Q ss_pred HHHHHHHccCCCcccccccccCC---HHHHHHHHHHHHhCCC-CCH-HHHHHHHHHHHHhCChhhhhcC
Q 005912 298 VEERLKKLIKGPEQHVLKPKAAS---KMVVSELKEELDAQGL-PTD-GTRNVLYQRVQKARRINRSRGR 361 (670)
Q Consensus 298 ~l~~l~k~~~~p~~~~L~~~~g~---~~~A~~l~~~M~~~Gi-p~d-~t~~~Ll~a~~~aG~~~eA~~~ 361 (670)
.+..+..+-. ..+. ..+|..+++. .+. +.. ..+..+-..|...|+.++|...
T Consensus 302 ~~~~l~~ly~---------~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~ 358 (378)
T 3q15_A 302 LFLFLQAVYK---------ETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAF 358 (378)
T ss_dssp HHHHHHHHHS---------SSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHh---------CCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 2222332211 2333 5566666655 444 332 5677888999999999998754
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00071 Score=63.39 Aligned_cols=156 Identities=12% Similarity=0.091 Sum_probs=114.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHH-HHHcC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQA-YTRAE 81 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~a-y~k~g 81 (670)
..+.+.|++++|+..|++..+. -+-+...+..+-..|.+.|++++|...|++... ..|+...+..+... +.+.+
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~----~~p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 14 SELLQQGEHAQALNVIQTLSDE-LQSRGDVKLAKADCLLETKQFELAQELLATIPL----EYQDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHTTCHHHHHHHHHTSCHH-HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG----GGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh----ccCChHHHHHHHHHHHHhhc
Confidence 3577899999999999886643 123577888999999999999999999999863 23444433332111 12222
Q ss_pred CcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHH
Q 005912 82 SYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRAL 160 (670)
Q Consensus 82 ~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay 160 (670)
...+|+..|.+..+ +.| +...+..+-.++...|++++|...|..+.+..+.+.- +..+..+...|
T Consensus 89 ---~~~~a~~~~~~al~----~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-------~~a~~~l~~~~ 154 (176)
T 2r5s_A 89 ---AESPELKRLEQELA----ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQD-------GEVKKTFMDIL 154 (176)
T ss_dssp ---TSCHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTT-------THHHHHHHHHH
T ss_pred ---ccchHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccCh-------HHHHHHHHHHH
Confidence 12246788888776 346 4788888999999999999999999999875432210 12788999999
Q ss_pred HHcCCHHHHHHHHHHHh
Q 005912 161 CREGRIIELLEALEAMA 177 (670)
Q Consensus 161 ~k~G~~eeA~~vf~~M~ 177 (670)
...|+.++|...|+...
T Consensus 155 ~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 155 SALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHCSSCHHHHHHHHHH
T ss_pred HHhCCCCcHHHHHHHHH
Confidence 99999999999998654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0018 Score=72.63 Aligned_cols=153 Identities=11% Similarity=-0.036 Sum_probs=112.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHH
Q 005912 8 AGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQ 87 (670)
Q Consensus 8 ~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~ 87 (670)
.|++++|+..|++..+. -.-+...|..+-..|.+.|++++|...|++... .. ..+...|..+-..|.+.| +.+
T Consensus 2 ~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~-p~~~~~~~~lg~~~~~~g---~~~ 74 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH-RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LH-PGHPEAVARLGRVRWTQQ---RHA 74 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TS-TTCHHHHHHHHHHHHHTT---CHH
T ss_pred CccHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hC-CCCHHHHHHHHHHHHHCC---CHH
Confidence 47889999999987754 123578899999999999999999999999872 21 335788999999999999 789
Q ss_pred HHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHc---
Q 005912 88 DVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCRE--- 163 (670)
Q Consensus 88 eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~--- 163 (670)
+|+..|++..+ +.| +...|..+-.+|.+.|++++|.+.|+...+..... +.++..+...|.+.
T Consensus 75 ~A~~~~~~al~----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~l~~~~~~~~~~ 141 (568)
T 2vsy_A 75 EAAVLLQQASD----AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE---------PYITAQLLNWRRRLCDW 141 (568)
T ss_dssp HHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHh----cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHhhcc
Confidence 99999999877 234 46789999999999999999999999988753221 22788899999999
Q ss_pred CCHHHHHHHHHHHhhCC
Q 005912 164 GRIIELLEALEAMAKDN 180 (670)
Q Consensus 164 G~~eeA~~vf~~M~~~g 180 (670)
|+.++|...|++..+.+
T Consensus 142 g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 142 RALDVLSAQVRAAVAQG 158 (568)
T ss_dssp TTHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhcC
Confidence 99999999999988765
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0014 Score=67.03 Aligned_cols=172 Identities=9% Similarity=-0.074 Sum_probs=122.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHchhC--CCCCCC-CHHHHHHHH
Q 005912 3 AEDCKAGDHSNALEIAYEMEAA----GRMAT-TFHFNHLLSCQATCGIPEVAFATFENMEYG--EDYMKP-DTETYNCVI 74 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~----Gv~Pd-~~tyn~LI~~yak~G~~e~A~~lf~~M~~~--~~gi~P-d~~tyn~LI 74 (670)
..|...|++++|+..|.+.... |-.+. ..+|+.+-..|.+.|++++|...|++.... ..|-.+ -..+|+.+-
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3577889999999999876542 32222 568899999999999999999999886520 111000 145788899
Q ss_pred HHHHHc-CCcccHHHHHHHHHHhHhccCCCC-C-C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCc
Q 005912 75 QAYTRA-ESYDRVQDVAELLGMMVEDHKRLQ-P-N-VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFG 150 (670)
Q Consensus 75 ~ay~k~-g~~~~~~eAl~lf~eM~~~~~gi~-P-d-~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~p 150 (670)
..|... | +.++|+..|.+-.....+.. + . ..+|..+-..|.+.|++++|...|+............. + ...
T Consensus 125 ~~~~~~lg---~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~-~~~ 199 (292)
T 1qqe_A 125 EILENDLH---DYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ-W-SLK 199 (292)
T ss_dssp HHHHHTTC---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTG-G-GHH
T ss_pred HHHHHhhc---CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCccc-H-HHH
Confidence 999996 9 78899999988765100100 0 0 35788899999999999999999999987543321110 0 000
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 005912 151 DPLSLYLRALCREGRIIELLEALEAMAKD 179 (670)
Q Consensus 151 dtyn~LI~ay~k~G~~eeA~~vf~~M~~~ 179 (670)
.+|..+..+|...|++++|...|+...+.
T Consensus 200 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l 228 (292)
T 1qqe_A 200 DYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 14677788899999999999999987654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00094 Score=69.73 Aligned_cols=145 Identities=13% Similarity=0.055 Sum_probs=111.1
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCC-CCCHHHHHHHHHHHHHcCCcccHHHHHHH
Q 005912 14 ALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYM-KPDTETYNCVIQAYTRAESYDRVQDVAEL 92 (670)
Q Consensus 14 Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi-~Pd~~tyn~LI~ay~k~g~~~~~~eAl~l 92 (670)
|+..|++....+ .++..++..+-..|...|++++|.+++.+-. ..+- .-+...+-.++..|.+.| +.+.|.+.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i--~~~~~~~~lea~~l~vqi~L~~~---r~d~A~k~ 158 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGI--DNDEAEGTTELLLLAIEVALLNN---NVSTASTI 158 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH--TSSCSTTHHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHh--ccCCCcCcHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 566677666554 5666777788899999999999999999875 2222 236788999999999999 89999999
Q ss_pred HHHhHhccCCCCC-----CHHHHHHHHHHHHH--cC--CHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHc
Q 005912 93 LGMMVEDHKRLQP-----NVKTYALLVECFTK--YC--AVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCRE 163 (670)
Q Consensus 93 f~eM~~~~~gi~P-----d~~Ty~~LL~a~ak--~g--~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~ 163 (670)
|..|.+ ..| +..+...|..++.. .| +...|..+|+++...... .. +-..|+.++.+.
T Consensus 159 l~~~~~----~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~--~~--------~~~lLln~~~~~ 224 (310)
T 3mv2_B 159 FDNYTN----AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPT--WK--------TQLGLLNLHLQQ 224 (310)
T ss_dssp HHHHHH----HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS--HH--------HHHHHHHHHHHH
T ss_pred HHHHHh----cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC--cc--------cHHHHHHHHHHc
Confidence 999987 467 36677777777443 34 899999999998764321 00 334555689999
Q ss_pred CCHHHHHHHHHHHhh
Q 005912 164 GRIIELLEALEAMAK 178 (670)
Q Consensus 164 G~~eeA~~vf~~M~~ 178 (670)
|++++|...++.+.+
T Consensus 225 g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 225 RNIAEAQGIVELLLS 239 (310)
T ss_dssp TCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999997655
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0041 Score=63.95 Aligned_cols=164 Identities=10% Similarity=0.026 Sum_probs=110.5
Q ss_pred cCChHHHHHHHHHHHHc------CCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHchhC--CCCCC-CCHHHHHHHH
Q 005912 8 AGDHSNALEIAYEMEAA------GRMATT----FHFNHLLSCQATCGIPEVAFATFENMEYG--EDYMK-PDTETYNCVI 74 (670)
Q Consensus 8 ~G~~~~Al~lf~~M~~~------Gv~Pd~----~tyn~LI~~yak~G~~e~A~~lf~~M~~~--~~gi~-Pd~~tyn~LI 74 (670)
.|++.+|.+++++-.+. +..++. ..|+.....|...|++++|...|.+.... ..+-. .-..+|+.+-
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56778888888766542 123442 36778888899999999999999876520 11101 1146889999
Q ss_pred HHHHHcCCcccHHHHHHHHHHhHhcc--CCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCc
Q 005912 75 QAYTRAESYDRVQDVAELLGMMVEDH--KRLQPN--VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFG 150 (670)
Q Consensus 75 ~ay~k~g~~~~~~eAl~lf~eM~~~~--~gi~Pd--~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~p 150 (670)
..|.+.| +.++|+..|.+-.... .| .|. ..+|..+-..|.. |++++|...|...........-. ....
T Consensus 84 ~~~~~~g---~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~---~~~~ 155 (307)
T 2ifu_A 84 MMLKDLQ---RMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERL---RQAA 155 (307)
T ss_dssp HHHHHTT---CGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCH---HHHH
T ss_pred HHHHhCC---CHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCh---hHHH
Confidence 9999999 5556666666543310 11 122 3577788888888 99999999999877532110000 0001
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 005912 151 DPLSLYLRALCREGRIIELLEALEAMAKD 179 (670)
Q Consensus 151 dtyn~LI~ay~k~G~~eeA~~vf~~M~~~ 179 (670)
.+|+.+-..|.+.|++++|...|++..+.
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 184 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSM 184 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 17888999999999999999999987653
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0028 Score=64.69 Aligned_cols=154 Identities=13% Similarity=-0.000 Sum_probs=118.6
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHH-HHHHcCC
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQ-AYTRAES 82 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~-ay~k~g~ 82 (670)
.+.+.|++++|+.+|++..+.. .-+...+..|-..|.+.|++++|..+|++... ..|+......... .+.+.+
T Consensus 126 ~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~----~~p~~~~~~~~~~~~l~~~~- 199 (287)
T 3qou_A 126 QLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPL----QDQDTRYQGLVAQIELLXQA- 199 (287)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG----GGCSHHHHHHHHHHHHHHHH-
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCch----hhcchHHHHHHHHHHHHhhc-
Confidence 4678899999999999987642 23677888999999999999999999999873 2466554333333 255556
Q ss_pred cccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALC 161 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~ 161 (670)
...+|+..|.+... ..| +...+..+-..|...|++++|...|..+.+...... .+..+..|...|.
T Consensus 200 --~~~~a~~~l~~al~----~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~-------~~~a~~~l~~~~~ 266 (287)
T 3qou_A 200 --ADTPEIQQLQQQVA----ENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAA-------DGQTRXTFQEILA 266 (287)
T ss_dssp --TSCHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGG-------GGHHHHHHHHHHH
T ss_pred --ccCccHHHHHHHHh----cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc-------cchHHHHHHHHHH
Confidence 45568888888876 245 567888899999999999999999999988643221 0127999999999
Q ss_pred HcCCHHHHHHHHHHH
Q 005912 162 REGRIIELLEALEAM 176 (670)
Q Consensus 162 k~G~~eeA~~vf~~M 176 (670)
..|+.++|...|+.-
T Consensus 267 ~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 267 ALGTGDALASXYRRQ 281 (287)
T ss_dssp HHCTTCHHHHHHHHH
T ss_pred HcCCCCcHHHHHHHH
Confidence 999999999888764
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0015 Score=61.36 Aligned_cols=163 Identities=11% Similarity=-0.047 Sum_probs=113.1
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchh--CCCCCC-CCHHHHHHHHHHHHHcC
Q 005912 5 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEY--GEDYMK-PDTETYNCVIQAYTRAE 81 (670)
Q Consensus 5 y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~--~~~gi~-Pd~~tyn~LI~ay~k~g 81 (670)
+...|++++|.++++.+... ......+++.+-..|...|++++|...|++... ...+.. ....+|+.+-..|...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 35689999999966655432 223567888999999999999999999988762 012222 23567888888999999
Q ss_pred CcccHHHHHHHHHHhHhccCCCCC-C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccC--C-CcccccCCCCchHH
Q 005912 82 SYDRVQDVAELLGMMVEDHKRLQP-N----VKTYALLVECFTKYCAVTEAIRHFRALQNYEG--G-TKVLHNEGNFGDPL 153 (670)
Q Consensus 82 ~~~~~~eAl~lf~eM~~~~~gi~P-d----~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~--~-~~v~~~~g~~pdty 153 (670)
+.++|...|.+....... .+ + ..++..+-..+...|++++|...+........ . +... ..++
T Consensus 81 ---~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~------~~~~ 150 (203)
T 3gw4_A 81 ---NWDAARRCFLEERELLAS-LPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAI------ACAF 150 (203)
T ss_dssp ---CHHHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH------HHHH
T ss_pred ---CHHHHHHHHHHHHHHHHH-cCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHH------HHHH
Confidence 788888888876541011 12 2 34577788889999999999999998775311 0 0000 0056
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhh
Q 005912 154 SLYLRALCREGRIIELLEALEAMAK 178 (670)
Q Consensus 154 n~LI~ay~k~G~~eeA~~vf~~M~~ 178 (670)
..+-..|.+.|++++|...|++..+
T Consensus 151 ~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 151 RGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 7888899999999999999987644
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0035 Score=53.16 Aligned_cols=98 Identities=14% Similarity=0.089 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHH
Q 005912 30 TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 109 (670)
Q Consensus 30 ~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~T 109 (670)
...|..+...|.+.|++++|..+|+++.. . ...+..+|..+...|.+.| +.++|+.+|.++.. . -..+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~--~-~~~~~~~ 79 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALE--L-DPNNAEAWYNLGNAYYKQG---DYDEAIEYYQKALE--L-DPNNAEA 79 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH--H-CTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--H-CcCcHHHHHHHHHHHHHhC---CHHHHHHHHHHHHH--h-CCccHHH
Confidence 56788888999999999999999999873 1 1346788999999999999 78899999999887 2 2346778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005912 110 YALLVECFTKYCAVTEAIRHFRALQNY 136 (670)
Q Consensus 110 y~~LL~a~ak~g~~d~A~~lf~~M~~~ 136 (670)
+..+...|.+.|++++|...|..+.+.
T Consensus 80 ~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 80 WYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 889999999999999999999998774
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.009 Score=64.25 Aligned_cols=287 Identities=12% Similarity=-0.037 Sum_probs=164.0
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHchh------CCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhc
Q 005912 26 RMATTFHFNHLLSCQATCGIPEVAFATFENMEY------GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVED 99 (670)
Q Consensus 26 v~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~------~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~ 99 (670)
.......||.|=..|...|+.++|.+.|++-.. +...-....++|+.+-..|...| +.++|...|++....
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g---~~~~A~~~~~ka~~i 123 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMG---RLSDVQIYVDKVKHV 123 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHH
Confidence 344567899999999999999999999987531 01112334689999999999999 778888888765431
Q ss_pred c---CC-CCC-CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHH---HHHcCCHHHH
Q 005912 100 H---KR-LQP-NVKTYALLVECFTKY--CAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRA---LCREGRIIEL 169 (670)
Q Consensus 100 ~---~g-i~P-d~~Ty~~LL~a~ak~--g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~a---y~k~G~~eeA 169 (670)
. .+ ..+ ...+|+.+-.++.+. +++++|...|+...+..+. .|+.++.+... +...|+.++|
T Consensus 124 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~---------~~~~~~~~~~~~~~l~~~~~~~~a 194 (472)
T 4g1t_A 124 CEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK---------NPEFTSGLAIASYRLDNWPPSQNA 194 (472)
T ss_dssp HHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT---------CHHHHHHHHHHHHHHHHSCCCCCT
T ss_pred hHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhcCchHHHHH
Confidence 0 11 122 346676666666654 4689999999998875321 12244444433 4566788889
Q ss_pred HHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCCCCCCccc
Q 005912 170 LEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVG 249 (670)
Q Consensus 170 ~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~ 249 (670)
+..|+...+.+. .+.. .+..+...+. ......+..++|..+++..... .|+. .
T Consensus 195 l~~~~~al~l~p---~~~~----~~~~l~~~~~-----------------~~~~~~~~~~~a~~~~~~al~~--~~~~-~ 247 (472)
T 4g1t_A 195 IDPLRQAIRLNP---DNQY----LKVLLALKLH-----------------KMREEGEEEGEGEKLVEEALEK--APGV-T 247 (472)
T ss_dssp HHHHHHHHHHCS---SCHH----HHHHHHHHHH-----------------HCC------CHHHHHHHHHHHH--CSSC-H
T ss_pred HHHHHHHhhcCC---cchH----HHHHHHHHHH-----------------HHHhhhhHHHHHHHHHHHHHHh--CccH-H
Confidence 998887766542 2221 1222211110 0112334566777777765442 2332 1
Q ss_pred chhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCC---Ccccccc---cccCCHHH
Q 005912 250 FIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKG---PEQHVLK---PKAASKMV 323 (670)
Q Consensus 250 ~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~---p~~~~L~---~~~g~~~~ 323 (670)
.++. .+...|.+.|+.++|...|.......-. +...+..+-..+...... ..+.... ......+.
T Consensus 248 ~~~~----~lg~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (472)
T 4g1t_A 248 DVLR----SAAKFYRRKDEPDKAIELLKKALEYIPN-----NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGH 318 (472)
T ss_dssp HHHH----HHHHHHHHTTCHHHHHHHHHHHHHHSTT-----CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHH
T ss_pred HHHH----HHHHHHHHcCchHHHHHHHHHHHHhCCC-----hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHH
Confidence 2333 3447889999999999999988765322 222222221111111000 0000000 11224566
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHhCChhhhhc
Q 005912 324 VSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRG 360 (670)
Q Consensus 324 A~~l~~~M~~~Gip~d~t~~~Ll~a~~~aG~~~eA~~ 360 (670)
|...++......-....++..+-..+...|++++|..
T Consensus 319 A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~ 355 (472)
T 4g1t_A 319 AVAHLKKADEANDNLFRVCSILASLHALADQYEEAEY 355 (472)
T ss_dssp HHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHH
Confidence 7777777665443223567777888889999998864
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0052 Score=58.39 Aligned_cols=124 Identities=10% Similarity=-0.053 Sum_probs=102.2
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCc
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESY 83 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~ 83 (670)
.|.+.|++++|+..|.+. +.|+...|..+-..|.+.|++++|...|++... .. ..+...|..+-..|.+.|
T Consensus 15 ~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~-~~~~~~~~~lg~~~~~~~-- 85 (213)
T 1hh8_A 15 LAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RD-KHLAVAYFQRGMLYYQTE-- 85 (213)
T ss_dssp HHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC-TTCHHHHHHHHHHHHHTT--
T ss_pred HHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hC-ccchHHHHHHHHHHHHcc--
Confidence 567889999999999876 467899999999999999999999999999773 11 346788999999999999
Q ss_pred ccHHHHHHHHHHhHhccCC------------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcc
Q 005912 84 DRVQDVAELLGMMVEDHKR------------LQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYE 137 (670)
Q Consensus 84 ~~~~eAl~lf~eM~~~~~g------------i~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g 137 (670)
+.++|+..|.+..+...+ ..| +...|..+-.+|.+.|++++|...|....+..
T Consensus 86 -~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 86 -KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp -CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred -cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 788999999998772110 112 23678889999999999999999999988753
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0066 Score=58.65 Aligned_cols=141 Identities=11% Similarity=0.019 Sum_probs=110.1
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC-
Q 005912 28 ATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN- 106 (670)
Q Consensus 28 Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd- 106 (670)
.|...|..+-..|.+.|++++|...|++... ..-.++...|..+-.+|.+.| +.++|+..|.+... +.|+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~----~~p~~ 75 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLK--LTNNQDSVTAYNCGVCADNIK---KYKEAADYFDIAIK----KNYNL 75 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTTCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----TTCSH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHh--ccCCCCcHHHHHHHHHHHHhh---cHHHHHHHHHHHHH----hCcch
Confidence 3567778888889999999999999999872 222378888888999999999 78999999999877 3454
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 005912 107 VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKD 179 (670)
Q Consensus 107 ~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~ 179 (670)
..+|..+-.+|...|++++|...|+...+........ ......+|..+=..|.+.|++++|...|+...+.
T Consensus 76 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 76 ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATI--EKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHH--HHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 5678889999999999999999999988754321100 0000014777778888999999999999998765
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0053 Score=55.39 Aligned_cols=130 Identities=12% Similarity=-0.002 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHH
Q 005912 30 TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 109 (670)
Q Consensus 30 ~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~T 109 (670)
...|..+-..|...|++++|...|++... . ...+..+|..+-..|.+.| +.++|+..|.+... .. ..+..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~-~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~a~~--~~-~~~~~~ 83 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIE--L-NPSNAIYYGNRSLAYLRTE---CYGYALGDATRAIE--LD-KKYIKG 83 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H-STTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH--HC-TTCHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH--h-CCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHH--hC-cccHHH
Confidence 34567777888899999999999998763 1 1336888999999999999 78899999998876 21 235778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHH--HHHHHHHHcCCHHHHHHHHHHHh
Q 005912 110 YALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLS--LYLRALCREGRIIELLEALEAMA 177 (670)
Q Consensus 110 y~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn--~LI~ay~k~G~~eeA~~vf~~M~ 177 (670)
|..+-.+|.+.|++++|...|........... ..+. .+...+.+.|++++|...+....
T Consensus 84 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~---------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 84 YYRRAASNMALGKFRAALRDYETVVKVKPHDK---------DAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88888999999999999999999887533211 1343 34444778899999999887653
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0045 Score=52.49 Aligned_cols=105 Identities=16% Similarity=0.105 Sum_probs=83.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
..|.+.|++++|+.+|.++.... ..+..++..+...|.+.|++++|..+|+++.. . ...+..+|..+...|.+.|
T Consensus 17 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~~~~la~~~~~~~- 91 (125)
T 1na0_A 17 NAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE--L-DPNNAEAWYNLGNAYYKQG- 91 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHTT-
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--h-CCccHHHHHHHHHHHHHhc-
Confidence 46788999999999999988753 34678899999999999999999999999873 2 1346889999999999999
Q ss_pred cccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQPN-VKTYALLVECFT 118 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~Pd-~~Ty~~LL~a~a 118 (670)
+.++|...|.++.. +.|+ ...+..+-..+.
T Consensus 92 --~~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 92 --DYDEAIEYYQKALE----LDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp --CHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHH
Confidence 78999999999877 2343 444444444443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.017 Score=57.23 Aligned_cols=138 Identities=12% Similarity=0.022 Sum_probs=103.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC----HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCC
Q 005912 29 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD----TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 104 (670)
Q Consensus 29 d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd----~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~ 104 (670)
+...+-.+-..|.+.|++++|...|+.+.. . .|+ ...|..+-.+|.+.| +.++|+..|........+ .
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~--~--~p~~~~~~~a~~~lg~~~~~~~---~~~~A~~~~~~~l~~~p~-~ 85 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFT--Y--GRTHEWAADAQFYLARAYYQNK---EYLLAASEYERFIQIYQI-D 85 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGG--G--CSCSTTHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTT-C
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--h--CCCCcchHHHHHHHHHHHHHhC---cHHHHHHHHHHHHHHCCC-C
Confidence 456666677788899999999999999873 1 233 678888899999999 788999999998872111 1
Q ss_pred CC-HHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHccCCCcccccCCCCchHH--------------HHHHHHHH
Q 005912 105 PN-VKTYALLVECFTK--------YCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPL--------------SLYLRALC 161 (670)
Q Consensus 105 Pd-~~Ty~~LL~a~ak--------~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdty--------------n~LI~ay~ 161 (670)
|. ...+..+-.++.+ .|++++|...|..+.+..+..... .... ..+-..|.
T Consensus 86 ~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~------~~a~~~~~~~~~~~~~~~~~la~~~~ 159 (261)
T 3qky_A 86 PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELV------DDATQKIRELRAKLARKQYEAARLYE 159 (261)
T ss_dssp TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTH------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 4556677777878 999999999999998754322111 0011 45577889
Q ss_pred HcCCHHHHHHHHHHHhhCC
Q 005912 162 REGRIIELLEALEAMAKDN 180 (670)
Q Consensus 162 k~G~~eeA~~vf~~M~~~g 180 (670)
+.|++++|...|+...+..
T Consensus 160 ~~g~~~~A~~~~~~~l~~~ 178 (261)
T 3qky_A 160 RRELYEAAAVTYEAVFDAY 178 (261)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HccCHHHHHHHHHHHHHHC
Confidence 9999999999999988764
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.011 Score=50.97 Aligned_cols=120 Identities=11% Similarity=0.054 Sum_probs=93.5
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC
Q 005912 27 MATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN 106 (670)
Q Consensus 27 ~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd 106 (670)
..+...|..+-..|.+.|++++|...|++... . ...+...|..+-..|...| +.++|+..|.+... .. ..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~-~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~a~~--~~-~~~ 83 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIK--R-NPKDAKLYSNRAACYTKLL---EFQLALKDCEECIQ--LE-PTF 83 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHT--T-CTTCHHHHHHHHHHHTTTT---CHHHHHHHHHHHHH--HC-TTC
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--c-CCCcHHHHHHHHHHHHHhc---cHHHHHHHHHHHHH--hC-CCc
Confidence 34677888899999999999999999999872 2 1336888999999999999 78899999999876 21 235
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcC
Q 005912 107 VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREG 164 (670)
Q Consensus 107 ~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G 164 (670)
..+|..+-.+|.+.|++++|.+.|....+..... +..+..+-..|.+.|
T Consensus 84 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 84 IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC---------KEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG---------THHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCc---------hHHHHHHHHHHHHhc
Confidence 7888889999999999999999999987643211 115666666666554
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.021 Score=57.86 Aligned_cols=168 Identities=7% Similarity=-0.060 Sum_probs=117.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCC-H----HHHHHHHHHHHHcCChHHHHHHHHHchhC-CCCCCCC--HHHHHHH
Q 005912 2 IAEDCKAGDHSNALEIAYEMEAAGRMAT-T----FHFNHLLSCQATCGIPEVAFATFENMEYG-EDYMKPD--TETYNCV 73 (670)
Q Consensus 2 I~~y~k~G~~~~Al~lf~~M~~~Gv~Pd-~----~tyn~LI~~yak~G~~e~A~~lf~~M~~~-~~gi~Pd--~~tyn~L 73 (670)
+..+...|++++|++.+.+.....-..+ . ..+..+-..|...|++++|...|++.... .....+. ..+|+.+
T Consensus 82 ~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 2qfc_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 3467889999999999988776432211 1 22344556677889999999999887520 1111222 5589999
Q ss_pred HHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCC
Q 005912 74 IQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN-----VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGN 148 (670)
Q Consensus 74 I~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd-----~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~ 148 (670)
-..|...| +.++|+..|.+.... ....|+ ..+|..+-..|.+.|++++|...+............ ...
T Consensus 162 g~~y~~~~---~~~~A~~~~~kal~~-~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~---~~~ 234 (293)
T 2qfc_A 162 ANIYAENG---YLKKGIDLFEQILKQ-LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS---MAL 234 (293)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHH-HHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB---CSS
T ss_pred HHHHHHcC---CHHHHHHHHHHHHHH-HHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc---HHH
Confidence 99999999 788999999887621 011222 258889999999999999999999987753211000 001
Q ss_pred CchHHHHHHHHHHHcCCHHHH-HHHHHHH
Q 005912 149 FGDPLSLYLRALCREGRIIEL-LEALEAM 176 (670)
Q Consensus 149 ~pdtyn~LI~ay~k~G~~eeA-~~vf~~M 176 (670)
.+.+|..+-..|.+.|+.++| ...|+..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 122788889999999999999 7767654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0082 Score=51.27 Aligned_cols=120 Identities=9% Similarity=-0.053 Sum_probs=93.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHH
Q 005912 29 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK 108 (670)
Q Consensus 29 d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~ 108 (670)
+...|..+-..|...|+++.|...|++... . ...+...|..+...|...| +.++|+..|.+... . -..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~--~-~~~~~~ 81 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIE--L-NPANAVYFCNRAAAYSKLG---NYAGAVQDCERAIC--I-DPAYSK 81 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH--H-CTTCHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHH--c-CCCCHHHHHHHHHHHHHhh---chHHHHHHHHHHHh--c-CccCHH
Confidence 456677888889999999999999998763 1 1346788999999999999 78899999999876 2 123477
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCH
Q 005912 109 TYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRI 166 (670)
Q Consensus 109 Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~ 166 (670)
.|..+..+|.+.|++++|...|....+..... +..+..+...|.+.|++
T Consensus 82 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 82 AYGRMGLALSSLNKHVEAVAYYKKALELDPDN---------ETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCccc---------hHHHHHHHHHHHHHhcC
Confidence 88888899999999999999999988753221 22677777777777654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.014 Score=59.14 Aligned_cols=169 Identities=8% Similarity=-0.040 Sum_probs=118.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcC-CCCCH----HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC----HHHHHH
Q 005912 2 IAEDCKAGDHSNALEIAYEMEAAG-RMATT----FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD----TETYNC 72 (670)
Q Consensus 2 I~~y~k~G~~~~Al~lf~~M~~~G-v~Pd~----~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd----~~tyn~ 72 (670)
+..+...|++++|..++++..... ..|+. ..|+.+...|...|++++|...|++... ...-.++ ..+|+.
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~-~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLN-QQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH-TCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHH-HhcccccHHHHHHHHHH
Confidence 456788999999999999988642 22332 2344566777778899999999999873 1111233 447999
Q ss_pred HHHHHHHcCCcccHHHHHHHHHHhHhcc--C-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCC
Q 005912 73 VIQAYTRAESYDRVQDVAELLGMMVEDH--K-RLQPNV-KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGN 148 (670)
Q Consensus 73 LI~ay~k~g~~~~~~eAl~lf~eM~~~~--~-gi~Pd~-~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~ 148 (670)
+-..|...| +.++|+..|.+..... . +..|.. .+|..+-..|.+.|++++|...+............ .-.
T Consensus 161 lg~~y~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~---~~~ 234 (293)
T 3u3w_A 161 IANIYAENG---YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS---MAL 234 (293)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB---CTT
T ss_pred HHHHHHHcC---CHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCc---HHH
Confidence 999999999 7889999998876310 1 222222 47888999999999999999999987753211100 000
Q ss_pred CchHHHHHHHHHHHcCC-HHHHHHHHHHHh
Q 005912 149 FGDPLSLYLRALCREGR-IIELLEALEAMA 177 (670)
Q Consensus 149 ~pdtyn~LI~ay~k~G~-~eeA~~vf~~M~ 177 (670)
.+.+|..+=..|.+.|+ .++|...|++..
T Consensus 235 ~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 12278888889999995 699988887653
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0082 Score=54.09 Aligned_cols=122 Identities=11% Similarity=-0.023 Sum_probs=95.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
..|...|+++.|+..|.+..... ..+..++..+-..|...|++++|...|++... . ...+...|..+-..|.+.|
T Consensus 21 ~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~-~~~~~~~~~~~a~~~~~~~- 95 (166)
T 1a17_A 21 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIE--L-DKKYIKGYYRRAASNMALG- 95 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHTT-
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h-CcccHHHHHHHHHHHHHhc-
Confidence 35678999999999999987642 33688889999999999999999999999773 1 1346788999999999999
Q ss_pred cccHHHHHHHHHHhHhccCCCCC-CHHHHHH--HHHHHHHcCCHHHHHHHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQP-NVKTYAL--LVECFTKYCAVTEAIRHFRALQN 135 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~--LL~a~ak~g~~d~A~~lf~~M~~ 135 (670)
+.++|+..|.+.... .| +...+.. +...+.+.|++++|...+.....
T Consensus 96 --~~~~A~~~~~~a~~~----~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 96 --KFRAALRDYETVVKV----KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp --CHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 789999999998772 33 3444533 33447788999999998877654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.071 Score=51.62 Aligned_cols=171 Identities=9% Similarity=0.033 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC-HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCH-
Q 005912 30 TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD-TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV- 107 (670)
Q Consensus 30 ~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd-~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~- 107 (670)
...+-.+-..|.+.|++++|...|+++.. ...-.|. ...+..+-.+|.+.| +.++|+..|.+..+. .|+.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~a~~~lg~~~~~~~---~~~~A~~~~~~~l~~----~P~~~ 75 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDN-RYPFGPYSQQVQLDLIYAYYKNA---DLPLAQAAIDRFIRL----NPTHP 75 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCTTSTTHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHH----CTTCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHH----CcCCC
Confidence 34455566778899999999999999873 1111222 357888889999999 788999999998772 3432
Q ss_pred ---HHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHccCCCcccccCCCCchHH-------------
Q 005912 108 ---KTYALLVECFTK------------------YCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPL------------- 153 (670)
Q Consensus 108 ---~Ty~~LL~a~ak------------------~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdty------------- 153 (670)
..+-.+-.++.+ .|+.++|...|+.+.+..+.... ++
T Consensus 76 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~---------a~~a~~~l~~~~~~~ 146 (225)
T 2yhc_A 76 NIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQY---------TTDATKRLVFLKDRL 146 (225)
T ss_dssp THHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTT---------HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChh---------HHHHHHHHHHHHHHH
Confidence 133333333433 57899999999999875332211 22
Q ss_pred ----HHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHH
Q 005912 154 ----SLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTG 229 (670)
Q Consensus 154 ----n~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~ 229 (670)
-.+-..|.+.|++++|...|+.+.+.. |+.-...-.+..+. ..+.+.|..+
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~----p~~~~~~~a~~~l~---------------------~~~~~~g~~~ 201 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY----PDTQATRDALPLME---------------------NAYRQMQMNA 201 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS----TTSHHHHHHHHHHH---------------------HHHHHTTCHH
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC----cCCCccHHHHHHHH---------------------HHHHHcCCcH
Confidence 234556889999999999999988764 22211000122222 2346778999
Q ss_pred HHHHHHHHhccCC
Q 005912 230 ERKRWVPRRGKTP 242 (670)
Q Consensus 230 ~a~~lf~~m~~~g 242 (670)
+|...++.+...+
T Consensus 202 ~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 202 QAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhhC
Confidence 9999999887653
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.013 Score=59.37 Aligned_cols=132 Identities=10% Similarity=0.004 Sum_probs=95.1
Q ss_pred HHHHHHHcCChHHHHHHHHHchhCCCCCCCCH----HHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCC-CCC----
Q 005912 36 LLSCQATCGIPEVAFATFENMEYGEDYMKPDT----ETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL-QPN---- 106 (670)
Q Consensus 36 LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~----~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi-~Pd---- 106 (670)
.+..+.+.|++++|..++++... .....|+. ..|+.+...|...| +.++|+..|.+... ... .++
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~-~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~Ai~~~~~al~--~~~~~~~~~~~ 154 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELK-KEEYHPEFQQFLQWQYYVAAYVLKKV---DYEYCILELKKLLN--QQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHHHHTTSS---CHHHHHHHHHHHHH--TCCCCSCTTHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhc-cccCChHHHHHHHHHHHHHHHHHccc---CHHHHHHHHHHHHH--HhcccccHHHH
Confidence 46778899999999999999873 22333442 23334555566666 68899999999876 222 233
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCc---hHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005912 107 VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFG---DPLSLYLRALCREGRIIELLEALEAMAK 178 (670)
Q Consensus 107 ~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~p---dtyn~LI~ay~k~G~~eeA~~vf~~M~~ 178 (670)
..+|+.+-.+|...|++++|...|....+.-... .+..+ .+|+.+-..|.+.|++++|...+++..+
T Consensus 155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~ 224 (293)
T 3u3w_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEAL-----HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-----ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3368999999999999999999999987421000 00011 1788999999999999999999987654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.011 Score=56.96 Aligned_cols=152 Identities=10% Similarity=0.055 Sum_probs=108.8
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHH----------------HHHHHHHcCChHHHHHHHHHchhCCCCCCC-
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMAT-TFHFNH----------------LLSCQATCGIPEVAFATFENMEYGEDYMKP- 65 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd-~~tyn~----------------LI~~yak~G~~e~A~~lf~~M~~~~~gi~P- 65 (670)
.+.+.|++++|+..|++.... .|+ ...|.. +-..|.+.|++++|...|++... +.|
T Consensus 13 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~ 86 (208)
T 3urz_A 13 AAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ----KAPN 86 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTT
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HCCC
Confidence 467889999999999998764 343 344555 78889999999999999999773 234
Q ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHccCCCcc
Q 005912 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAV--TEAIRHFRALQNYEGGTKV 142 (670)
Q Consensus 66 d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~--d~A~~lf~~M~~~g~~~~v 142 (670)
+...|..+-..|...| +.++|+..|.+..+ +.| +..+|..+-.+|...|.. ..+...+..... +.
T Consensus 87 ~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~----~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~----~~- 154 (208)
T 3urz_A 87 NVDCLEACAEMQVCRG---QEKDALRMYEKILQ----LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS----PT- 154 (208)
T ss_dssp CHHHHHHHHHHHHHHT---CHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C----CC-
T ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC----CC-
Confidence 6788999999999999 88999999999987 346 467777777777655543 334444443321 11
Q ss_pred cccCCCCch--HHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 143 LHNEGNFGD--PLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 143 ~~~~g~~pd--tyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
|. .+..+=.++...|++++|...|++..+..
T Consensus 155 -------~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 155 -------KMQYARYRDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp -------HHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred -------chhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 11 22233344566899999999999987653
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.004 Score=71.89 Aligned_cols=154 Identities=8% Similarity=-0.024 Sum_probs=125.1
Q ss_pred HhcCChHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHH
Q 005912 6 CKAGDHSNALEIAYEMEA-------AGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYT 78 (670)
Q Consensus 6 ~k~G~~~~Al~lf~~M~~-------~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~ 78 (670)
...|++++|++.|++... .....+...|..+-..|.+.|++++|...|++... . -.-+...|+.+=.+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~-~p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE--R-VGWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--H-HCCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc--c-CcchHHHHHHHHHHHH
Confidence 467899999999999871 11234567888888999999999999999999873 1 1336788999999999
Q ss_pred HcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHH
Q 005912 79 RAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYL 157 (670)
Q Consensus 79 k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI 157 (670)
+.| +.++|+..|++..+ +.| +...|..+-.+|.+.|++++ .+.|+...+..... +..|..+-
T Consensus 479 ~~g---~~~~A~~~~~~al~----l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~---------~~a~~~lg 541 (681)
T 2pzi_A 479 LTG---DYDSATKHFTEVLD----TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGV---------ISAAFGLA 541 (681)
T ss_dssp HHT---CHHHHHHHHHHHHH----HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC---------HHHHHHHH
T ss_pred HcC---CHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCch---------HHHHHHHH
Confidence 999 88999999999877 345 46788889999999999999 99999988753221 12788999
Q ss_pred HHHHHcCCHHHHHHHHHHHhhC
Q 005912 158 RALCREGRIIELLEALEAMAKD 179 (670)
Q Consensus 158 ~ay~k~G~~eeA~~vf~~M~~~ 179 (670)
.+|.+.|++++|...|++..+.
T Consensus 542 ~~~~~~g~~~~A~~~~~~al~l 563 (681)
T 2pzi_A 542 RARSAEGDRVGAVRTLDEVPPT 563 (681)
T ss_dssp HHHHHTTCHHHHHHHHHTSCTT
T ss_pred HHHHHcCCHHHHHHHHHhhccc
Confidence 9999999999999999987554
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0057 Score=62.83 Aligned_cols=167 Identities=7% Similarity=-0.061 Sum_probs=115.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHchh--CCCCCCCC--HHHHHHH
Q 005912 3 AEDCKAGDHSNALEIAYEMEAA----GRMA-TTFHFNHLLSCQATCGIPEVAFATFENMEY--GEDYMKPD--TETYNCV 73 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~----Gv~P-d~~tyn~LI~~yak~G~~e~A~~lf~~M~~--~~~gi~Pd--~~tyn~L 73 (670)
..|...|++++|+..|.+..+. |-.+ -..+|+.+-..|.+.|++++|...|++... ...| .|. ..+|+.+
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~l 122 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRA 122 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHH
Confidence 4577789999999999876542 2111 145788888999999999999999987542 0111 122 4677888
Q ss_pred HHHHHHcCCcccHHHHHHHHHHhHhcc--CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCc
Q 005912 74 IQAYTRAESYDRVQDVAELLGMMVEDH--KRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFG 150 (670)
Q Consensus 74 I~ay~k~g~~~~~~eAl~lf~eM~~~~--~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~p 150 (670)
-..|.+ | +.++|+..|.+-.... .+-.+ -..+|..+-..|.+.|++++|...|.............. ...
T Consensus 123 g~~~~~-g---~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~ 195 (307)
T 2ifu_A 123 GKLMEP-L---DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYP---TCY 195 (307)
T ss_dssp HHHHTT-T---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH---HHH
T ss_pred HHHHHc-C---CHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChh---HHH
Confidence 888877 8 7889998988765410 01000 146788889999999999999999998876321110000 000
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 005912 151 DPLSLYLRALCREGRIIELLEALEAMA 177 (670)
Q Consensus 151 dtyn~LI~ay~k~G~~eeA~~vf~~M~ 177 (670)
.++..+...|...|++++|...|++..
T Consensus 196 ~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 196 KKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 156677778888899999999999987
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=96.82 E-value=0.015 Score=49.53 Aligned_cols=109 Identities=15% Similarity=0.038 Sum_probs=87.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
..+...|+++.|+..|++..... ..+...|..+-..|...|++++|...|+.... . ...+...|..+-..|.+.|
T Consensus 20 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~- 94 (131)
T 2vyi_A 20 NEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAIC--I-DPAYSKAYGRMGLALSSLN- 94 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHTT-
T ss_pred HHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHh--c-CccCHHHHHHHHHHHHHhC-
Confidence 45778999999999999988652 34678889999999999999999999999773 1 1335788999999999999
Q ss_pred cccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCC
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCA 122 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~ 122 (670)
+.++|...|.+... +.| +...+..+..++.+.|+
T Consensus 95 --~~~~A~~~~~~~~~----~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 95 --KHVEAVAYYKKALE----LDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp --CHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHHTT
T ss_pred --CHHHHHHHHHHHHh----cCccchHHHHHHHHHHHHHhc
Confidence 78999999999876 234 56677777777776665
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0079 Score=55.69 Aligned_cols=122 Identities=10% Similarity=0.072 Sum_probs=95.3
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHH-HHHcCCc
Q 005912 5 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQA-YTRAESY 83 (670)
Q Consensus 5 y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~a-y~k~g~~ 83 (670)
+...|++++|+..|....... ..+...|..+-..|...|++++|...|++... .. ..+...|..+-.. |.+.|
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~-p~~~~~~~~la~~l~~~~~-- 93 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQ--LR-GENAELYAALATVLYYQAS-- 93 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HH-CSCHHHHHHHHHHHHHHTT--
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cC-CCCHHHHHHHHHHHHHhcC--
Confidence 456788999999998877642 34678899999999999999999999999763 11 2367788888888 77888
Q ss_pred ccH--HHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcc
Q 005912 84 DRV--QDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYE 137 (670)
Q Consensus 84 ~~~--~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g 137 (670)
+. ++|+..|.+... +.| +...+..+-..|...|++++|...|....+..
T Consensus 94 -~~~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 94 -QHMTAQTRAMIDKALA----LDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp -TCCCHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred -CcchHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 55 899999999877 234 46788888899999999999999999988754
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.014 Score=54.63 Aligned_cols=126 Identities=6% Similarity=-0.112 Sum_probs=88.2
Q ss_pred HHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhcc--CCCCC-CHHHHHHHHHHH
Q 005912 41 ATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDH--KRLQP-NVKTYALLVECF 117 (670)
Q Consensus 41 ak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~--~gi~P-d~~Ty~~LL~a~ 117 (670)
...|++++|..+++.+. . .......+|+.+-..|...| +.++|+..|.+..... .+..| ...++..+-..|
T Consensus 3 ~~~g~~~~A~~~~~~~~--~-~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 76 (203)
T 3gw4_A 3 FEAHDYALAERQAQALL--A-HPATASGARFMLGYVYAFMD---RFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVE 76 (203)
T ss_dssp ----CHHHHHHHHHHHH--T-STTTHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhc--C-ChHHHHHHHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 46799999999555555 2 11345788999999999999 7888888888765410 12222 346678888899
Q ss_pred HHcCCHHHHHHHHHHHHHcc--CC--CcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005912 118 TKYCAVTEAIRHFRALQNYE--GG--TKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAK 178 (670)
Q Consensus 118 ak~g~~d~A~~lf~~M~~~g--~~--~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~ 178 (670)
...|++++|...+....... .+ +... ..+++.+-..|...|++++|...|++...
T Consensus 77 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 77 RMAGNWDAARRCFLEERELLASLPEDPLAA------SANAYEVATVALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCHHHH------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCccHHHH------HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999998877531 11 1000 11688888999999999999999987654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.026 Score=48.43 Aligned_cols=102 Identities=11% Similarity=0.052 Sum_probs=85.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCc
Q 005912 63 MKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTK 141 (670)
Q Consensus 63 i~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~ 141 (670)
...+...|..+-..|.+.| +.++|+..|.+... ..| +..+|..+..+|...|++++|...|....+....
T Consensus 12 ~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-- 82 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKG---DYPQAMKHYTEAIK----RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-- 82 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTT---CSHHHHHHHHHHHT----TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT--
T ss_pred CcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH----cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--
Confidence 3556788999999999999 78899999999876 234 6788899999999999999999999998875321
Q ss_pred ccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 142 VLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 142 v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
.+.+|..+-..|.+.|++++|...|+...+..
T Consensus 83 -------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 83 -------FIKGYTRKAAALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp -------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -------chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 12278889999999999999999999887654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.043 Score=61.26 Aligned_cols=151 Identities=9% Similarity=-0.111 Sum_probs=101.6
Q ss_pred cCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcC
Q 005912 43 CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYC 121 (670)
Q Consensus 43 ~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g 121 (670)
.|++++|...|++... . -.-+...|..+-..|.+.| +.++|+..|.+..+ +.| +..+|..+-.+|...|
T Consensus 2 ~g~~~~A~~~~~~al~--~-~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~g 71 (568)
T 2vsy_A 2 TADGPRELLQLRAAVR--H-RPQDFVAWLMLADAELGMG---DTTAGEMAVQRGLA----LHPGHPEAVARLGRVRWTQQ 71 (568)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHT----TSTTCHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHH--h-CCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCC
Confidence 4788999999998762 1 1235788999999999999 78999999999876 345 4788899999999999
Q ss_pred CHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHH
Q 005912 122 AVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSW 201 (670)
Q Consensus 122 ~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~ 201 (670)
++++|.+.|+...+.... .+..|..+-..|.+.|++++|...|+...+..- .+.. .+..+...+
T Consensus 72 ~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~----~~~~l~~~~ 135 (568)
T 2vsy_A 72 RHAEAAVLLQQASDAAPE---------HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP---EEPY----ITAQLLNWR 135 (568)
T ss_dssp CHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHH----HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHH----HHHHHHHHH
Confidence 999999999998875322 122788999999999999999999999877642 1211 133332222
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHcC---CcHHHHHHHHHHhcc
Q 005912 202 IEPLQEEAELGYEIDYIARYISEG---GLTGERKRWVPRRGK 240 (670)
Q Consensus 202 ~~ll~~m~~~G~~pd~i~~~~~~~---g~~~~a~~lf~~m~~ 240 (670)
... |..++|...++...+
T Consensus 136 ---------------------~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 136 ---------------------RRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp ---------------------HHTTCCTTHHHHHHHHHHHHH
T ss_pred ---------------------HHhhccccHHHHHHHHHHHHh
Confidence 444 788888888887755
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.022 Score=59.52 Aligned_cols=129 Identities=10% Similarity=-0.038 Sum_probs=105.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC----------------HHHHHHHHHHHHHcCCcccHHHHHHH
Q 005912 29 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD----------------TETYNCVIQAYTRAESYDRVQDVAEL 92 (670)
Q Consensus 29 d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd----------------~~tyn~LI~ay~k~g~~~~~~eAl~l 92 (670)
+...|+.+-..|.+.|++++|...|++... +.|+ ...|+.+-.+|.+.| +.++|+..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~----~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g---~~~~A~~~ 218 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVS----WLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ---AFSAAIES 218 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcC---CHHHHHHH
Confidence 356778888899999999999999998763 1333 589999999999999 78999999
Q ss_pred HHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHH-H
Q 005912 93 LGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIEL-L 170 (670)
Q Consensus 93 f~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA-~ 170 (670)
|.+..+ +.| +...|..+-.+|...|++++|...|....+..... +.++..+-..|.+.|+.++| .
T Consensus 219 ~~~al~----~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~---------~~a~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 219 CNKALE----LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN---------KAAKTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp HHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC---------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH----hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 999887 234 67889999999999999999999999988753221 22788899999999999988 4
Q ss_pred HHHHHHh
Q 005912 171 EALEAMA 177 (670)
Q Consensus 171 ~vf~~M~ 177 (670)
.+|..|.
T Consensus 286 ~~~~~~~ 292 (336)
T 1p5q_A 286 KLYANMF 292 (336)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5666664
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.03 Score=56.95 Aligned_cols=134 Identities=12% Similarity=0.009 Sum_probs=104.0
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC
Q 005912 27 MATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 105 (670)
Q Consensus 27 ~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P 105 (670)
..+...+..+-..+.+.|++++|...|++... ..| +...+..+-..|.+.| +.++|..+|++... ..|
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~----~~P~~~~a~~~la~~~~~~g---~~~~A~~~l~~~~~----~~p 182 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQ----LSNQNGEIGLLLAETLIALN---RSEDAEAVLXTIPL----QDQ 182 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HTTSCHHHHHHHHHHHHHTT---CHHHHHHHHTTSCG----GGC
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH----hCCcchhHHHHHHHHHHHCC---CHHHHHHHHHhCch----hhc
Confidence 34456677777888999999999999999763 134 5678999999999999 89999999998865 457
Q ss_pred CHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 106 NVKTYALLV-ECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 106 d~~Ty~~LL-~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
+........ ..+...+..+.|...++......+. + ++.+..+-..|...|++++|...|....+..
T Consensus 183 ~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~-~--------~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~ 249 (287)
T 3qou_A 183 DTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPE-D--------AALATQLALQLHQVGRNEEALELLFGHLRXD 249 (287)
T ss_dssp SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT-C--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCc-c--------HHHHHHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence 655333322 3366778888899999888765322 1 2278889999999999999999999998875
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.16 Score=48.85 Aligned_cols=115 Identities=16% Similarity=0.020 Sum_probs=56.5
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----ChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHH-
Q 005912 5 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG----IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR- 79 (670)
Q Consensus 5 y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G----~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k- 79 (670)
|...+++++|+..|++..+.| +...++.|=..|.. + ++++|...|++... .-+...++.|=..|..
T Consensus 28 ~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~-----~g~~~a~~~Lg~~y~~g 98 (212)
T 3rjv_A 28 WVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE-----AGSKSGEIVLARVLVNR 98 (212)
T ss_dssp HHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHTCG
T ss_pred HhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHcC
Confidence 334555555555555555543 33444444444444 4 55555555555542 1234444444444433
Q ss_pred ---cCCcccHHHHHHHHHHhHhccCCCCCC---HHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 005912 80 ---AESYDRVQDVAELLGMMVEDHKRLQPN---VKTYALLVECFTK----YCAVTEAIRHFRALQN 135 (670)
Q Consensus 80 ---~g~~~~~~eAl~lf~eM~~~~~gi~Pd---~~Ty~~LL~a~ak----~g~~d~A~~lf~~M~~ 135 (670)
.+ +..+|+.+|.+-.+ . .|. ...+..|-..|.. .++.++|...|.....
T Consensus 99 ~g~~~---d~~~A~~~~~~A~~--~--~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 99 QAGAT---DVAHAITLLQDAAR--D--SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp GGSSC---CHHHHHHHHHHHTS--S--TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred CCCcc---CHHHHHHHHHHHHH--c--CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 33 45555555555543 1 221 3444455555554 5555555555555544
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.034 Score=46.37 Aligned_cols=100 Identities=13% Similarity=0.013 Sum_probs=78.9
Q ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCccccc
Q 005912 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHN 145 (670)
Q Consensus 66 d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~ 145 (670)
+...|..+...+...| +.++|+..|.+... . -..+...+..+..+|.+.|++++|...+....+....
T Consensus 3 ~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~--~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------ 70 (118)
T 1elw_A 3 QVNELKEKGNKALSVG---NIDDALQCYSEAIK--L-DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD------ 70 (118)
T ss_dssp HHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------
T ss_pred hHHHHHHHHHHHHHcc---cHHHHHHHHHHHHH--H-CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc------
Confidence 4567788888888888 78899999998876 2 1236777888888899999999999999988775321
Q ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 146 EGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 146 ~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
.+..|..+-..|.+.|++++|...|+...+.+
T Consensus 71 ---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 71 ---WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 12278888889999999999999999887654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.021 Score=50.42 Aligned_cols=140 Identities=14% Similarity=-0.019 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC----HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC
Q 005912 31 FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD----TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN 106 (670)
Q Consensus 31 ~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd----~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd 106 (670)
.+++.+-..|...|++++|...|++... ...-.++ ..+|+.+-..|...| +.++|+..|.+........ ++
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~-~~ 84 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLL-IAKEFGDKAAERIAYSNLGNAYIFLG---EFETASEYYKKTLLLARQL-KD 84 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH-HHHHhCCchHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHh-CC
Confidence 4677888889999999999999988762 0000122 257888899999999 7888988888765410011 12
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005912 107 ----VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAK 178 (670)
Q Consensus 107 ----~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~ 178 (670)
..++..+-..|...|++++|.+.+...........-. ...+.++..+-..|...|++++|...|++..+
T Consensus 85 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 85 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR---IGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccch---HhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4567788888999999999999998877531100000 00011788888999999999999999987654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0049 Score=56.34 Aligned_cols=139 Identities=12% Similarity=0.003 Sum_probs=102.9
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcCC
Q 005912 5 DCKAGDHSNALEIAYEMEAAGRMA-TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAES 82 (670)
Q Consensus 5 y~k~G~~~~Al~lf~~M~~~Gv~P-d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~g~ 82 (670)
+...|++++|+..|...... .| +...+-.|-..|.+.|++++|...|++... +.| +..+|..+-..|.+.|
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~----~~p~~~~a~~~lg~~~~~~~- 79 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN----VQERDPKAHRFLGLLYELEE- 79 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTT-
T ss_pred HHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcC-
Confidence 44567889999888776532 23 234455677889999999999999999763 234 6789999999999999
Q ss_pred cccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHH-HHHHHHccCCCcccccCCCCchHHHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQPN-VKTYALLVECFTKYCAVTEAIRH-FRALQNYEGGTKVLHNEGNFGDPLSLYLRAL 160 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~Pd-~~Ty~~LL~a~ak~g~~d~A~~l-f~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay 160 (670)
+.++|+..|.+..+ +.|+ ..+|..+-..|.+.|+.+++.+. ++...+..+. .|.+|+..-..+
T Consensus 80 --~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~---------~~~~~~l~~~ll 144 (150)
T 4ga2_A 80 --NTDKAVECYRRSVE----LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG---------SPAVYKLKEQLL 144 (150)
T ss_dssp --CHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT---------CHHHHHHHHHHH
T ss_pred --chHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC---------CHHHHHHHHHHH
Confidence 88999999999877 4564 67888999999999999876665 4666664321 122666666666
Q ss_pred HHcCC
Q 005912 161 CREGR 165 (670)
Q Consensus 161 ~k~G~ 165 (670)
.+.|+
T Consensus 145 ~~~G~ 149 (150)
T 4ga2_A 145 DCEGE 149 (150)
T ss_dssp HTCCC
T ss_pred HHhCc
Confidence 55553
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.013 Score=48.65 Aligned_cols=99 Identities=11% Similarity=-0.022 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC---C
Q 005912 30 TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP---N 106 (670)
Q Consensus 30 ~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P---d 106 (670)
...|..+-..|.+.|++++|...|++... . ...+...|..+-..|.+.| +.++|+..|.+..+ . .| +
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~-~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~a~~--~--~~~~~~ 75 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQ--L-DPEESKYWLMKGKALYNLE---RYEEAVDCYNYVIN--V--IEDEYN 75 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHH--H-CCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH--T--SCCTTC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHH--h-CcCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHH--h--Ccccch
Confidence 34566677778888999999999988762 1 1335778888888888888 78889999988876 2 34 4
Q ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHccC
Q 005912 107 VKTYALLVECFTKY-CAVTEAIRHFRALQNYEG 138 (670)
Q Consensus 107 ~~Ty~~LL~a~ak~-g~~d~A~~lf~~M~~~g~ 138 (670)
...+..+..+|.+. |++++|.+.+........
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 76 KDVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 77888888888899 999999999988876543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.05 Score=47.67 Aligned_cols=100 Identities=13% Similarity=0.030 Sum_probs=80.0
Q ss_pred CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCC
Q 005912 65 PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN----VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGT 140 (670)
Q Consensus 65 Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd----~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~ 140 (670)
.+...|..+-..+.+.| +.++|+.+|.+..+ +.|+ ...|..+-.+|.+.|++++|...+....+....
T Consensus 26 ~~~~~~~~~a~~~~~~~---~~~~A~~~~~~a~~----~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~- 97 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCG---DYGGALAAYTQALG----LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG- 97 (148)
T ss_dssp CCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHT----SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-
T ss_pred HHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHH----HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-
Confidence 46778888888888888 78899999998876 4576 577888888889999999999999888764321
Q ss_pred cccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 141 KVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 141 ~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
.+..|..+-.+|.+.|++++|...|+...+..
T Consensus 98 --------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 98 --------DVKALYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp --------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred --------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 12277788888999999999999999887654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.043 Score=59.75 Aligned_cols=158 Identities=13% Similarity=0.029 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHc----CCHHHHHHHHHHHhhCCC
Q 005912 109 TYALLVECFTKYC---AVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCRE----GRIIELLEALEAMAKDNQ 181 (670)
Q Consensus 109 Ty~~LL~a~ak~g---~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~----G~~eeA~~vf~~M~~~gi 181 (670)
.+..|-..|.+.| +.++|.+.|......+..... .+..|-..|... +++++|...|+... .|.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~---------~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~ 247 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQ---------RVDSVARVLGDATLGTPDEKTAQALLEKIA-PGY 247 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHH---------HHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGS
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHH---------HHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCC
Confidence 6667777777888 888888888888776543321 234555566444 68899999999887 543
Q ss_pred CCCCchHH-HHhH-H----HHHHHHHHHHHHHHHHcCCCHHH--HHHHHHcC----CcHHHHHHHHHHhccCCCCCCccc
Q 005912 182 PVPPRAMI-LSRK-Y----RTLVSSWIEPLQEEAELGYEIDY--IARYISEG----GLTGERKRWVPRRGKTPLDPDAVG 249 (670)
Q Consensus 182 ~i~p~~~i-~~~t-y----~~ll~a~~~ll~~m~~~G~~pd~--i~~~~~~~----g~~~~a~~lf~~m~~~gi~Pd~d~ 249 (670)
+.... ++.. | ..-...++..+....+.|...-. +-.++..+ ...++|..+|+... .| ++
T Consensus 248 ---~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~g---~~-- 318 (452)
T 3e4b_A 248 ---PASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV-GR---EV-- 318 (452)
T ss_dssp ---THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT-TT---CH--
T ss_pred ---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh-CC---CH--
Confidence 33321 1111 1 01123344555665666632211 11223322 26777777777665 22 22
Q ss_pred chhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 005912 250 FIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPA 285 (670)
Q Consensus 250 ~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~ 285 (670)
..+..|=..+..+.....+.++|..+|+.-...|..
T Consensus 319 ~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 354 (452)
T 3e4b_A 319 AADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQN 354 (452)
T ss_dssp HHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCT
T ss_pred HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChH
Confidence 222222211111112234777788877777766654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.026 Score=48.06 Aligned_cols=101 Identities=12% Similarity=0.057 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC---
Q 005912 30 TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN--- 106 (670)
Q Consensus 30 ~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd--- 106 (670)
...|..+-..|...|+++.|...|++... . ...+...|..+-..|.+.| +.++|+..|.+.........++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~-~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~ 77 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKE--L-DPTNMTYITNQAAVYFEKG---DYNKCRELCEKAIEVGRENREDYRQ 77 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHh--c-CCccHHHHHHHHHHHHHhc---cHHHHHHHHHHHHhhccccchhHHH
Confidence 34677777888889999999999988763 1 1346778888888888888 7888888888876521111223
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005912 107 -VKTYALLVECFTKYCAVTEAIRHFRALQNY 136 (670)
Q Consensus 107 -~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~ 136 (670)
..+|..+..+|.+.|++++|...|......
T Consensus 78 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 78 IAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 677888888899999999999999888774
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.078 Score=61.21 Aligned_cols=194 Identities=10% Similarity=0.025 Sum_probs=127.1
Q ss_pred HHhcCChHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCC---------CCCC--------
Q 005912 5 DCKAGDHSNAL-EIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDY---------MKPD-------- 66 (670)
Q Consensus 5 y~k~G~~~~Al-~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~g---------i~Pd-------- 66 (670)
+-+.|+.+.|. .+|..-... ++.+...|-.++..+-+.|+++.|+.+|+.+.. .. -.|+
T Consensus 353 ~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~--~l~~~~~~~~~~~p~~~~~~~~~ 429 (679)
T 4e6h_A 353 QGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCID--RIHLDLAALMEDDPTNESAINQL 429 (679)
T ss_dssp HHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HHHHHhhhhhhccCcchhhhhhh
Confidence 34567788886 888887653 444666677788888889999999999998872 10 0142
Q ss_pred ----HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCC
Q 005912 67 ----TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK-R-LQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGT 140 (670)
Q Consensus 67 ----~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~-g-i~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~ 140 (670)
...|-..+....+.| ..+.|..+|..... . + ..+...+..+.|.-.+ .++.+.|..+|+...+.-
T Consensus 430 ~~~~~~vWi~y~~~erR~~---~l~~AR~vf~~A~~--~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~~--- 500 (679)
T 4e6h_A 430 KSKLTYVYCVYMNTMKRIQ---GLAASRKIFGKCRR--LKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKYF--- 500 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHH--TGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHHH---
T ss_pred ccchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH--hcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHC---
Confidence 236778887777777 68899999998876 3 2 2233333333333222 345899999999887741
Q ss_pred cccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 005912 141 KVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIAR 220 (670)
Q Consensus 141 ~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~ 220 (670)
...+..|..+++.....|+.+.|..+|+....... ++.. ...+...+ ..
T Consensus 501 ------p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~--~~~~------~~~lw~~~-----------------~~ 549 (679)
T 4e6h_A 501 ------ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS--DSHL------LKMIFQKV-----------------IF 549 (679)
T ss_dssp ------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS--STTH------HHHHHHHH-----------------HH
T ss_pred ------CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC--CHHH------HHHHHHHH-----------------HH
Confidence 12233678888888889999999999998877643 1111 11111111 12
Q ss_pred HHHcCCcHHHHHHHHHHhccC
Q 005912 221 YISEGGLTGERKRWVPRRGKT 241 (670)
Q Consensus 221 ~~~~~g~~~~a~~lf~~m~~~ 241 (670)
+-...|..+.+..+.+++.+.
T Consensus 550 fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 550 FESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 234557778888888888653
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.42 E-value=0.043 Score=45.72 Aligned_cols=98 Identities=14% Similarity=0.036 Sum_probs=77.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CH
Q 005912 29 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NV 107 (670)
Q Consensus 29 d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~ 107 (670)
+...+..+-..|...|++++|...|+.... . ...+...|..+-..|.+.| +.++|...|.+... . .| +.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~--~--~~~~~ 72 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIK--L-DPHNHVLYSNRSAAYAKKG---DYQKAYEDGCKTVD--L--KPDWG 72 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHH--H--CTTCH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHH--H-CCCcHHHHHHHHHHHHhhc---cHHHHHHHHHHHHH--h--CcccH
Confidence 345677788888899999999999998762 1 1236778888888888888 78889999988876 2 33 56
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005912 108 KTYALLVECFTKYCAVTEAIRHFRALQNY 136 (670)
Q Consensus 108 ~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~ 136 (670)
..|..+..+|.+.|++++|...+....+.
T Consensus 73 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 73 KGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 78888888999999999999999888764
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.088 Score=47.95 Aligned_cols=100 Identities=11% Similarity=0.040 Sum_probs=80.6
Q ss_pred CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCccc
Q 005912 65 PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVL 143 (670)
Q Consensus 65 Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~ 143 (670)
.+...|..+-..|.+.| +.++|+..|.+... +.| +...|..+-.+|.+.|++++|...|....+....
T Consensus 9 ~~a~~~~~~g~~~~~~g---~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---- 77 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARK---EYSKAIDLYTQALS----IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK---- 77 (164)
T ss_dssp HHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred hhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH----hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----
Confidence 35667888888888999 78899999998876 234 6778888889999999999999999988875322
Q ss_pred ccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 144 HNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 144 ~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
.+..|..+-..|.+.|++++|...|+...+..
T Consensus 78 -----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 78 -----YSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp -----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 12278888999999999999999999887654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=96.40 E-value=0.035 Score=57.93 Aligned_cols=123 Identities=11% Similarity=0.012 Sum_probs=98.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHH
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMAT--------------TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTE 68 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd--------------~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~ 68 (670)
..|.+.|++++|+..|++.....-... ...|+.+-.+|.+.|++++|...|++... .. ..+..
T Consensus 155 ~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~--~~-p~~~~ 231 (336)
T 1p5q_A 155 TVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE--LD-SNNEK 231 (336)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC-TTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hC-CCcHH
Confidence 357789999999999999887532211 58899999999999999999999999873 11 34688
Q ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHH
Q 005912 69 TYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEA-IRHFRALQN 135 (670)
Q Consensus 69 tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A-~~lf~~M~~ 135 (670)
.|..+-.+|.+.| +.++|+..|.+..+ +.| +...+..+-.++.+.|+.+++ ..++..|..
T Consensus 232 a~~~lg~~~~~~g---~~~~A~~~~~~al~----l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 232 GLSRRGEAHLAVN---DFELARADFQKVLQ----LYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHH----HCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 88999999999877 345 567888888899999999888 445665543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.042 Score=50.99 Aligned_cols=128 Identities=13% Similarity=0.023 Sum_probs=92.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHH
Q 005912 33 FNHLLSCQATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYA 111 (670)
Q Consensus 33 yn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~ 111 (670)
+..+-..|.+.|++++|...|++... ..| +...|..+-..|.+.| +.++|+..|+.... ..|+...+.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~----~~P~~~~a~~~la~~~~~~g---~~~~A~~~~~~a~~----~~p~~~~~~ 77 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSD----ELQSRGDVKLAKADCLLETK---QFELAQELLATIPL----EYQDNSYKS 77 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCH----HHHTSHHHHHHHHHHHHHTT---CHHHHHHHHTTCCG----GGCCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCcHHHHHHHHHHHHHCC---CHHHHHHHHHHhhh----ccCChHHHH
Confidence 44556678899999999999998762 133 5788999999999999 89999999998865 334443332
Q ss_pred HHHHH-HHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 112 LLVEC-FTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 112 ~LL~a-~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
.+... +...+....+...|+...+..+. .+..+..+-..|.+.|++++|...|+...+..
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~al~~~P~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 138 (176)
T 2r5s_A 78 LIAKLELHQQAAESPELKRLEQELAANPD---------NFELACELAVQYNQVGRDEEALELLWNILKVN 138 (176)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHSTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhcccchHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence 22111 22222333567888877764322 12278889999999999999999999998875
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.015 Score=53.72 Aligned_cols=122 Identities=11% Similarity=0.116 Sum_probs=93.3
Q ss_pred HHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHH-HH
Q 005912 41 ATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVEC-FT 118 (670)
Q Consensus 41 ak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a-~a 118 (670)
...|++++|...|+.... . -..+...|..+-..|...| +.++|+..|.+... +.| +...|..+..+ |.
T Consensus 21 ~~~~~~~~A~~~~~~al~--~-~p~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~----~~p~~~~~~~~la~~l~~ 90 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIR--A-NPQNSEQWALLGEYYLWQN---DYSNSLLAYRQALQ----LRGENAELYAALATVLYY 90 (177)
T ss_dssp C-----CCCCHHHHHHHH--H-CCSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HHCSCHHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHH--h-CCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHH
Confidence 456788889888888652 1 1346789999999999999 78899999999876 234 56677777777 77
Q ss_pred HcCCH--HHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 005912 119 KYCAV--TEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQ 181 (670)
Q Consensus 119 k~g~~--d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi 181 (670)
..|++ ++|...|.......... +..|..+-..|.+.|++++|...|+...+...
T Consensus 91 ~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 91 QASQHMTAQTRAMIDKALALDSNE---------ITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HTTTCCCHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred hcCCcchHHHHHHHHHHHHhCCCc---------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 99998 99999999988753221 22788889999999999999999999888753
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.046 Score=50.41 Aligned_cols=99 Identities=9% Similarity=0.029 Sum_probs=81.7
Q ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccc
Q 005912 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLH 144 (670)
Q Consensus 66 d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~ 144 (670)
+...|..+=..|.+.| +.++|+..|..... +.| +...|..+-.+|...|++++|...|+...+..+.
T Consensus 35 ~~~~~~~lg~~~~~~g---~~~eA~~~~~~al~----~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~----- 102 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKG---RIEEAEVFFRFLCI----YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN----- 102 (151)
T ss_dssp HHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-----
T ss_pred HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-----
Confidence 3456777788888999 78899999999887 345 5778888999999999999999999998875422
Q ss_pred cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 145 NEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 145 ~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
.|..|..+=.+|.+.|++++|...|+...+..
T Consensus 103 ----~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 103 ----DYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp ----CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ----CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 12378889999999999999999999987754
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=96.37 E-value=0.021 Score=48.72 Aligned_cols=106 Identities=10% Similarity=0.034 Sum_probs=81.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC----HHHHHHHHHHHH
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD----TETYNCVIQAYT 78 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd----~~tyn~LI~ay~ 78 (670)
..|...|++++|+..|.+..... ..+...+..+-..|...|++++|...|++.........++ ..+|..+-..|.
T Consensus 12 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 90 (131)
T 1elr_A 12 NDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYF 90 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHH
Confidence 45778999999999999988753 3467888999999999999999999999876300011222 778999999999
Q ss_pred HcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHH
Q 005912 79 RAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 116 (670)
Q Consensus 79 k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a 116 (670)
+.| +.++|...|.+... +.|+......+-.+
T Consensus 91 ~~~---~~~~A~~~~~~~~~----~~~~~~~~~~l~~~ 121 (131)
T 1elr_A 91 KEE---KYKDAIHFYNKSLA----EHRTPDVLKKCQQA 121 (131)
T ss_dssp HTT---CHHHHHHHHHHHHH----HCCCHHHHHHHHHH
T ss_pred Hhc---cHHHHHHHHHHHHH----hCCCHHHHHHHHHH
Confidence 999 78899999999877 34665555444433
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.027 Score=46.60 Aligned_cols=102 Identities=14% Similarity=0.049 Sum_probs=82.7
Q ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCccccc
Q 005912 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHN 145 (670)
Q Consensus 66 d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~ 145 (670)
+...|..+-..|.+.| +.++|+..|.+... .. ..+..+|..+-.+|...|++++|...|....+....
T Consensus 5 ~~~~~~~~~~~~~~~~---~~~~A~~~~~~a~~--~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~------ 72 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAG---NYTESIDLFEKAIQ--LD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED------ 72 (112)
T ss_dssp STTGGGGHHHHHHSSC---CHHHHHHHHHHHHH--HC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC------
T ss_pred cHHHHHHHHHHHHHhh---hHHHHHHHHHHHHH--hC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc------
Confidence 3456778888888999 78899999999876 21 235778889999999999999999999999875322
Q ss_pred CCCCchHHHHHHHHHHHc-CCHHHHHHHHHHHhhCC
Q 005912 146 EGNFGDPLSLYLRALCRE-GRIIELLEALEAMAKDN 180 (670)
Q Consensus 146 ~g~~pdtyn~LI~ay~k~-G~~eeA~~vf~~M~~~g 180 (670)
...+.+|..+-..|.+. |++++|.+.|.......
T Consensus 73 -~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 73 -EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp -TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred -cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 00123788999999999 99999999999988765
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.13 Score=51.78 Aligned_cols=136 Identities=8% Similarity=-0.019 Sum_probs=93.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCH----HHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCC-CCCC--
Q 005912 34 NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT----ETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR-LQPN-- 106 (670)
Q Consensus 34 n~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~----~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~g-i~Pd-- 106 (670)
...+..|...|++++|...+..... .....++. ..+..+...|...| +.++|+..|.+....... ..+.
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELK-KEEYHPEFQQFLQWQYYVAAYVLKKV---DYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHHHHHHHHTSS---CHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhc-cccCChhHHHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHhcCCchHHH
Confidence 4566778899999999999987663 11111211 22344555566777 788999999987651011 1122
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---cCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005912 107 VKTYALLVECFTKYCAVTEAIRHFRALQNY---EGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAK 178 (670)
Q Consensus 107 ~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~---g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~ 178 (670)
..+|+.+-..|...|++++|...|...... ....... ...+|+.+-..|.+.|++++|...|++..+
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~-----~~~~~~nlg~~y~~~~~y~~Al~~~~kal~ 224 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF-----DVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccc-----hHHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 458899999999999999999999988732 1110000 002788899999999999999999987654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.33 Score=46.53 Aligned_cols=147 Identities=12% Similarity=-0.015 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHH
Q 005912 13 NALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAEL 92 (670)
Q Consensus 13 ~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~l 92 (670)
+|+..|.+..+.| +...+..|=..|...+++++|...|++... . -+...++.|=..|...|.-.+.++|+++
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~---g~~~a~~~lg~~y~~~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAA--Q---GDGDALALLAQLKIRNPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--T---TCHHHHHHHHHHTTSSTTSCCHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--c---CCHHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 5778888888775 778888888999999999999999999883 3 3667777777777764322358899999
Q ss_pred HHHhHhccCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHH----cC
Q 005912 93 LGMMVEDHKRLQPNVKTYALLVECFTK----YCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCR----EG 164 (670)
Q Consensus 93 f~eM~~~~~gi~Pd~~Ty~~LL~a~ak----~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k----~G 164 (670)
|.+-.+ .+ +...+..|-..|.. .+++++|...|......+.... .+..++.|=..|.. .+
T Consensus 76 ~~~A~~--~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~-------~~~a~~~Lg~~y~~g~g~~~ 143 (212)
T 3rjv_A 76 AEKAVE--AG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDA-------AVDAQMLLGLIYASGVHGPE 143 (212)
T ss_dssp HHHHHH--TT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHH-------HHHHHHHHHHHHHHTSSSSC
T ss_pred HHHHHH--CC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcc-------hHHHHHHHHHHHHcCCCCCC
Confidence 999877 43 56677777777776 8899999999999877543100 02277888888888 88
Q ss_pred CHHHHHHHHHHHhhC
Q 005912 165 RIIELLEALEAMAKD 179 (670)
Q Consensus 165 ~~eeA~~vf~~M~~~ 179 (670)
+.++|...|+.-.+.
T Consensus 144 d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 144 DDVKASEYFKGSSSL 158 (212)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999998776
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.059 Score=48.96 Aligned_cols=99 Identities=11% Similarity=0.001 Sum_probs=79.6
Q ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccc
Q 005912 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLH 144 (670)
Q Consensus 66 d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~ 144 (670)
+...|..+-..+.+.| +.++|+..|..... +.| +...|..+-.+|...|++++|...|+........
T Consensus 20 ~~~~~~~~g~~~~~~g---~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~----- 87 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSG---XYEDAHXVFQALCV----LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX----- 87 (148)
T ss_dssp HHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----
T ss_pred hHHHHHHHHHHHHHcC---ChHHHHHHHHHHHH----cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-----
Confidence 4556777778888999 78899999998876 234 6777888888999999999999999998875322
Q ss_pred cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 145 NEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 145 ~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
.|.+|..+-.+|...|++++|...|+...+..
T Consensus 88 ----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 88 ----EPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp ----CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 12278888899999999999999999877654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.09 Score=45.70 Aligned_cols=101 Identities=11% Similarity=0.056 Sum_probs=78.0
Q ss_pred CCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCccc
Q 005912 64 KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVL 143 (670)
Q Consensus 64 ~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~ 143 (670)
..+...|..+-..|.+.| +.++|+..|.+.... . ..+...|..+-.+|...|+++.|...|....+....
T Consensus 6 ~~~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~--~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---- 75 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGR---KYPEAAACYGRAITR--N-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ---- 75 (137)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHH--C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred cccHHHHHHHHHHHHHhC---cHHHHHHHHHHHHhh--C-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch----
Confidence 456788888888888888 788888888887662 1 234677888888888999999999999888775322
Q ss_pred ccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 005912 144 HNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKD 179 (670)
Q Consensus 144 ~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~ 179 (670)
.+.+|..+-..|.+.|++++|...|+...+.
T Consensus 76 -----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 76 -----SVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp -----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 1227888888899999999999999877654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.078 Score=46.40 Aligned_cols=98 Identities=10% Similarity=0.042 Sum_probs=83.6
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC----HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCC
Q 005912 28 ATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD----TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL 103 (670)
Q Consensus 28 Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd----~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi 103 (670)
.+...+..+-..|.+.|++++|...|++... +.|+ ...|..+-.+|.+.| +.++|+..|.+... +
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~----~~~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~----~ 94 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALG----LDATPQDQAVLHRNRAACHLKLE---DYDKAETEASKAIE----K 94 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT----SCCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----H
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----HcccchHHHHHHHHHHHHHHHHc---cHHHHHHHHHHHHh----h
Confidence 3677888889999999999999999999872 3566 688899999999999 78899999998876 2
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005912 104 QP-NVKTYALLVECFTKYCAVTEAIRHFRALQNY 136 (670)
Q Consensus 104 ~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~ 136 (670)
.| +...|..+-.+|...|++++|...|......
T Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 95 DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 34 5778888889999999999999999988774
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0087 Score=54.63 Aligned_cols=121 Identities=12% Similarity=0.032 Sum_probs=93.3
Q ss_pred HHHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHH
Q 005912 40 QATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECF 117 (670)
Q Consensus 40 yak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ 117 (670)
|...|++++|...|..... ..| +...|-.|=..|.+.| +.++|++.|.+..+ +.| +..+|..+-.+|
T Consensus 7 ~~~~~~~e~ai~~~~~a~~----~~p~~~~~~~~la~~y~~~~---~~~~A~~~~~~al~----~~p~~~~a~~~lg~~~ 75 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTP----SPRQKSIKGFYFAKLYYEAK---EYDLAKKYICTYIN----VQERDPKAHRFLGLLY 75 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSC----SHHHHHTTHHHHHHHHHHTT---CHHHHHHHHHHHHH----HCTTCHHHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHHhcc----cCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH----hCCCCHHHHHHHHHHH
Confidence 3456788999999988761 123 2445666778899999 78899999999887 345 578899999999
Q ss_pred HHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHH-HHHHhhCC
Q 005912 118 TKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEA-LEAMAKDN 180 (670)
Q Consensus 118 ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~v-f~~M~~~g 180 (670)
.+.|++++|...|....+..+. .+++|..+-..|.+.|+.++|.+. ++...+..
T Consensus 76 ~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~ 130 (150)
T 4ga2_A 76 ELEENTDKAVECYRRSVELNPT---------QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF 130 (150)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS
T ss_pred HHcCchHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC
Confidence 9999999999999998875321 123788999999999999877665 57666543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.24 Score=57.06 Aligned_cols=221 Identities=7% Similarity=0.008 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHH-HHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHH
Q 005912 13 NALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF-ATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAE 91 (670)
Q Consensus 13 ~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~-~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~ 91 (670)
.+..+|++.... +.-+...|-.....+-+.|+.+.|. .+|++.. . .+..+...|-..+...-+.| +.+.|..
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi--~-~~P~s~~Lwl~~a~~ee~~~---~~e~aR~ 399 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQ--Q-CIPNSAVLAFSLSEQYELNT---KIPEIET 399 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHH--H-HCTTCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--H-hCCCCHHHHHHHHHHHHHhC---CHHHHHH
Confidence 445666666543 3336667777777788889999996 9999876 2 23446667888888888999 7888999
Q ss_pred HHHHhHhccCC---------CCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-cCCCcccccCCCC
Q 005912 92 LLGMMVEDHKR---------LQPN------------VKTYALLVECFTKYCAVTEAIRHFRALQNY-EGGTKVLHNEGNF 149 (670)
Q Consensus 92 lf~eM~~~~~g---------i~Pd------------~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~-g~~~~v~~~~g~~ 149 (670)
+|+.... .. -.|+ ..+|...+....+.|.++.|+.+|....+. +...
T Consensus 400 iyek~l~--~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~--------- 468 (679)
T 4e6h_A 400 TILSCID--RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT--------- 468 (679)
T ss_dssp HHHHHHH--HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC---------
T ss_pred HHHHHHH--HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC---------
Confidence 9998875 21 0142 235777777777889999999999998875 2111
Q ss_pred chHHHHHHHHHHHc-CCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcH
Q 005912 150 GDPLSLYLRALCRE-GRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLT 228 (670)
Q Consensus 150 pdtyn~LI~ay~k~-G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~ 228 (670)
+..|-.....--+. ++.+.|..+|+...+.- +.+..+ +. .+++ +....|..
T Consensus 469 ~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~---p~~~~~----w~----~y~~-----------------fe~~~~~~ 520 (679)
T 4e6h_A 469 PDIYLENAYIEYHISKDTKTACKVLELGLKYF---ATDGEY----IN----KYLD-----------------FLIYVNEE 520 (679)
T ss_dssp THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH---TTCHHH----HH----HHHH-----------------HHHHHTCH
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC---CCchHH----HH----HHHH-----------------HHHhCCCH
Confidence 11333322233344 45899999999887752 111111 11 2211 12334688
Q ss_pred HHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005912 229 GERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEG 283 (670)
Q Consensus 229 ~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~g 283 (670)
+.|+.+|+......-.|......|.. .+.--.+.|+.+.+.++.+.|...-
T Consensus 521 ~~AR~lferal~~~~~~~~~~~lw~~----~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 521 SQVKSLFESSIDKISDSHLLKMIFQK----VIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHHHTTTSSSTTHHHHHHHH----HHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH----HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999987653212111133433 3355577899999999999998764
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.12 Score=49.44 Aligned_cols=59 Identities=15% Similarity=0.102 Sum_probs=50.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 113 LVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 113 LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
+-.+|.+.|++++|...|....+..+. .++.|..+-..|...|++++|...|+...+.+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 118 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN---------NVDCLEACAEMQVCRGQEKDALRMYEKILQLE 118 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 778899999999999999998875322 12288999999999999999999999988765
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.043 Score=48.47 Aligned_cols=96 Identities=11% Similarity=0.071 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHH
Q 005912 32 HFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTY 110 (670)
Q Consensus 32 tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty 110 (670)
.|+-+=..|.+.|++++|...|++... . -..+...|..+-.+|.+.| +.++|+..|.+..+ +.| +...|
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~--~-~p~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~----~~p~~~~a~ 84 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVK--R-DPENAILYSNRAACLTKLM---EFQRALDDCDTCIR----LDSKFIKGY 84 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HCTTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--h-CCCCHHHHHHHhhHHHhhc---cHHHHHHHHHHHHH----hhhhhhHHH
Confidence 344455567777777777777777552 1 1235667777777777777 66777777777665 233 35667
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcc
Q 005912 111 ALLVECFTKYCAVTEAIRHFRALQNYE 137 (670)
Q Consensus 111 ~~LL~a~ak~g~~d~A~~lf~~M~~~g 137 (670)
..+-.+|...|++++|.+.|+...+..
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 777777777777777777777766543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.079 Score=46.08 Aligned_cols=99 Identities=12% Similarity=0.013 Sum_probs=83.6
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-C
Q 005912 28 ATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-N 106 (670)
Q Consensus 28 Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d 106 (670)
.+...|..+-..|.+.|++++|...|+.... .. ..+...|..+-.+|.+.| +.++|+..|.+.... .| +
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~-~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~----~p~~ 76 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT--RN-PLVAVYYTNRALCYLKMQ---QPEQALADCRRALEL----DGQS 76 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC-TTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHH----CTTC
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHh--hC-cCcHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHh----Cchh
Confidence 4678888899999999999999999998763 11 335788999999999999 788999999998772 34 5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005912 107 VKTYALLVECFTKYCAVTEAIRHFRALQNY 136 (670)
Q Consensus 107 ~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~ 136 (670)
...|..+-.+|...|+++.|...|......
T Consensus 77 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 77 VKAHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 778899999999999999999999988764
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=96.15 E-value=0.036 Score=51.14 Aligned_cols=98 Identities=14% Similarity=0.038 Sum_probs=82.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-C
Q 005912 29 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-N 106 (670)
Q Consensus 29 d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d 106 (670)
+...+..+-..|.+.|++++|...|++... +.| +...|..+=.+|.+.| +.++|+..|.+... +.| +
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~----~~P~~~~~~~~lg~~~~~~g---~~~~Ai~~~~~al~----l~P~~ 103 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCI----YDFYNVDYIMGLAAIYQIKE---QFQQAADLYAVAFA----LGKND 103 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HSSSC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHHc---cHHHHHHHHHHHHh----hCCCC
Confidence 344667777889999999999999999873 234 6888999999999999 88999999999987 345 4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcc
Q 005912 107 VKTYALLVECFTKYCAVTEAIRHFRALQNYE 137 (670)
Q Consensus 107 ~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g 137 (670)
...|..+-.+|.+.|++++|...|+...+..
T Consensus 104 ~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 104 YTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 6788889999999999999999999988753
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=96.15 E-value=0.077 Score=47.31 Aligned_cols=98 Identities=8% Similarity=-0.029 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCccccc
Q 005912 67 TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHN 145 (670)
Q Consensus 67 ~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~ 145 (670)
...+..+-..+.+.| +.++|+..|..... ..| +...|..+-.+|.+.|++++|...|.........
T Consensus 18 ~~~~~~~a~~~~~~g---~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------ 84 (142)
T 2xcb_A 18 LEQLYALGFNQYQAG---KWDDAQKIFQALCM----LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN------ 84 (142)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred HHHHHHHHHHHHHHc---cHHHHHHHHHHHHH----hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC------
Confidence 445666677788889 78899999999876 234 5677888888999999999999999998875322
Q ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 146 EGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 146 ~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
.|..|..+-.+|...|++++|...|+...+..
T Consensus 85 ---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 85 ---EPRFPFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp ---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 12278888899999999999999999877654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.11 Score=54.97 Aligned_cols=165 Identities=8% Similarity=-0.047 Sum_probs=112.7
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC-C---------------HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCH
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMA-T---------------TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT 67 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~P-d---------------~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~ 67 (670)
.+.+.|++++|++.|.......-.. + ...++.|...|.+.|++++|..+|..... -.+-.++.
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~-~~~~~~~~ 91 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE-YMMQFAKS 91 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH-HHHTSCHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHccch
Confidence 4678999999999999988643221 1 12367889999999999999999988763 11112222
Q ss_pred H---HHHHHHHHHH-HcCCcccHHHHHHHHHHhHhcc--CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCC
Q 005912 68 E---TYNCVIQAYT-RAESYDRVQDVAELLGMMVEDH--KRLQPN-VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGT 140 (670)
Q Consensus 68 ~---tyn~LI~ay~-k~g~~~~~~eAl~lf~eM~~~~--~gi~Pd-~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~ 140 (670)
. ....++..+. ..| ..+.|..++.+..... .+..+. ..++..+...|...|++++|..++......-...
T Consensus 92 ~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 168 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPD---SLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKL 168 (434)
T ss_dssp HHHHHHHHHHHHHCSCCS---CHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhc
Confidence 2 2222333332 334 6778888877654210 233333 4577889999999999999999999877532111
Q ss_pred cccccCCCCc---hHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005912 141 KVLHNEGNFG---DPLSLYLRALCREGRIIELLEALEAMAK 178 (670)
Q Consensus 141 ~v~~~~g~~p---dtyn~LI~ay~k~G~~eeA~~vf~~M~~ 178 (670)
...+ .+|+.++..|...|++++|..+++....
T Consensus 169 ------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 169 ------DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp ------SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 0111 1899999999999999999999987654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.055 Score=49.37 Aligned_cols=99 Identities=10% Similarity=-0.018 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CH
Q 005912 29 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NV 107 (670)
Q Consensus 29 d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~ 107 (670)
+...|..+-..|.+.|++++|...|++... .. .-+...|..+-.+|.+.| +.++|+..|.+... +.| +.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~-p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~----~~p~~~ 79 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALS--IA-PANPIYLSNRAAAYSASG---QHEKAAEDAELATV----VDPKYS 79 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HS-TTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HCTTCH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hC-CcCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHH----hCCCCH
Confidence 456778888899999999999999999763 11 236888999999999999 78899999999877 234 47
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcc
Q 005912 108 KTYALLVECFTKYCAVTEAIRHFRALQNYE 137 (670)
Q Consensus 108 ~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g 137 (670)
..|..+-.+|.+.|++++|...|....+..
T Consensus 80 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 80 KAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 888999999999999999999999988754
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.93 E-value=0.074 Score=50.15 Aligned_cols=158 Identities=8% Similarity=-0.047 Sum_probs=99.5
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC--------------HHHHH
Q 005912 6 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD--------------TETYN 71 (670)
Q Consensus 6 ~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd--------------~~tyn 71 (670)
...|.++++.+.|+.-... .......+..+-..|.+.|++++|...|++... ...-.|+ ...|.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEE-KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD-FFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp -------CCCSGGGCCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHhcccccchhhHHHHHHHHHHHHHH
Confidence 3345555555555321111 011344567777788899999999999998773 1111221 27888
Q ss_pred HHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCch
Q 005912 72 CVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGD 151 (670)
Q Consensus 72 ~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pd 151 (670)
.+-.+|.+.| +.++|+..|..... . -..+...|..+-.+|...|++++|...|....+..... +.
T Consensus 93 ~la~~~~~~~---~~~~A~~~~~~al~--~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---------~~ 157 (198)
T 2fbn_A 93 NLATCYNKNK---DYPKAIDHASKVLK--I-DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN---------LD 157 (198)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHH--H-STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC---------HH
T ss_pred HHHHHHHHhc---CHHHHHHHHHHHHH--h-CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc---------HH
Confidence 8999999999 78899999999877 2 12357888889999999999999999999988753221 22
Q ss_pred HHHHHHHHHHHcCCHHHHH-HHHHHHhhCC
Q 005912 152 PLSLYLRALCREGRIIELL-EALEAMAKDN 180 (670)
Q Consensus 152 tyn~LI~ay~k~G~~eeA~-~vf~~M~~~g 180 (670)
++..+-..+.+.|+..++. ..|..|...+
T Consensus 158 ~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 158 IRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 6778888888877777766 5666665444
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.061 Score=48.87 Aligned_cols=99 Identities=13% Similarity=-0.007 Sum_probs=81.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CH
Q 005912 29 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NV 107 (670)
Q Consensus 29 d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~ 107 (670)
+...+..+-..|.+.|++++|...|+.... . -..+...|..+-.+|.+.| +.++|+..|.+... +.| +.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~-~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~----l~p~~~ 89 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCV--L-DHYDSRFFLGLGACRQAMG---QYDLAIHSYSYGAV----MDIXEP 89 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HSTTCT
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHH--c-CcccHHHHHHHHHHHHHHh---hHHHHHHHHHHHHh----cCCCCc
Confidence 345667777889999999999999998763 1 1347788999999999999 88999999999877 334 45
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcc
Q 005912 108 KTYALLVECFTKYCAVTEAIRHFRALQNYE 137 (670)
Q Consensus 108 ~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g 137 (670)
..|..+-.+|...|++++|...|....+..
T Consensus 90 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 90 RFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 788888999999999999999999887743
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.088 Score=45.46 Aligned_cols=97 Identities=12% Similarity=0.000 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHH
Q 005912 30 TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVK 108 (670)
Q Consensus 30 ~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~ 108 (670)
...|..+-..|.+.|++++|...|++... . -..+...|..+-.+|.+.| +.++|+..|.+..+ +.| +..
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~--~-~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~----~~p~~~~ 73 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIK--R-APEDARGYSNRAAALAKLM---SFPEAIADCNKAIE----KDPNFVR 73 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HCTTCHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH--h-CCCChHHHHHHHHHHHHhc---CHHHHHHHHHHHHH----hCCCcHH
Confidence 34566677788889999999999988763 1 1335788899999999999 78899999988876 234 467
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005912 109 TYALLVECFTKYCAVTEAIRHFRALQNY 136 (670)
Q Consensus 109 Ty~~LL~a~ak~g~~d~A~~lf~~M~~~ 136 (670)
.|..+-.+|...|++++|...|....+.
T Consensus 74 ~~~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 74 AYIRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 8888888999999999999999887764
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.13 Score=44.30 Aligned_cols=98 Identities=14% Similarity=0.109 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCccccc
Q 005912 67 TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHN 145 (670)
Q Consensus 67 ~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~ 145 (670)
...|..+-..+.+.| +.++|+..|.+... +.| +...|..+-.+|.+.|++++|...|....+.....
T Consensus 4 a~~~~~~g~~~~~~~---~~~~A~~~~~~al~----~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----- 71 (126)
T 3upv_A 4 AEEARLEGKEYFTKS---DWPNAVKAYTEMIK----RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF----- 71 (126)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred HHHHHHHHHHHHHhc---CHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-----
Confidence 456777778889999 78899999999876 234 57889999999999999999999999988753221
Q ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 146 EGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 146 ~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
+.+|..+-.+|...|++++|...|+...+.+
T Consensus 72 ----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 72 ----VRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 2278889999999999999999999876643
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.022 Score=65.73 Aligned_cols=141 Identities=9% Similarity=-0.085 Sum_probs=107.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAE 81 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~g 81 (670)
..|.+.|++++|+..|++..+.. .-+...|+.+=..|.+.|++++|...|++... +.| +...|+.+-.+|.+.|
T Consensus 441 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~----l~P~~~~~~~~lg~~~~~~g 515 (681)
T 2pzi_A 441 RALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLD----TFPGELAPKLALAATAELAG 515 (681)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HSTTCSHHHHHHHHHHHHHT
T ss_pred HHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHHcC
Confidence 35778999999999999988642 23677888888999999999999999999763 234 5688999999999999
Q ss_pred CcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHH
Q 005912 82 SYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRAL 160 (670)
Q Consensus 82 ~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay 160 (670)
++ ++ +..|++..+ +.| +...|..+-.+|.+.|++++|.+.|+...+..... +..|..+..+|
T Consensus 516 ~~---~~-~~~~~~al~----~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~---------~~a~~~~~~~~ 578 (681)
T 2pzi_A 516 NT---DE-HKFYQTVWS----TNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHF---------TTARLTSAVTL 578 (681)
T ss_dssp CC---CT-TCHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTH---------HHHHHHHHHHT
T ss_pred Ch---HH-HHHHHHHHH----hCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCccc---------HHHHHHHHHHH
Confidence 54 46 778888766 235 56788999999999999999999999876542211 11677777777
Q ss_pred HHcCC
Q 005912 161 CREGR 165 (670)
Q Consensus 161 ~k~G~ 165 (670)
...|.
T Consensus 579 ~~~~~ 583 (681)
T 2pzi_A 579 LSGRS 583 (681)
T ss_dssp C----
T ss_pred HccCC
Confidence 66555
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.18 Score=44.25 Aligned_cols=102 Identities=14% Similarity=0.133 Sum_probs=83.6
Q ss_pred CCCC-HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCC
Q 005912 63 MKPD-TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGT 140 (670)
Q Consensus 63 i~Pd-~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~ 140 (670)
+.|+ ...|...=..|.+.| +.++|+..|.+..+ +.| +..+|..+-.+|.+.|++++|...|....+....
T Consensus 8 inP~~a~~~~~~G~~~~~~g---~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~- 79 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKG---DYPTAMRHYNEAVK----RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK- 79 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HCHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH----hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-
Confidence 4454 356777778899999 78899999999876 234 6788999999999999999999999998875322
Q ss_pred cccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 141 KVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 141 ~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
.+.+|..+-.+|...|++++|...|+...+..
T Consensus 80 --------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 80 --------FIKGYIRKAACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp --------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred --------hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 12278899999999999999999999987754
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.038 Score=48.69 Aligned_cols=130 Identities=8% Similarity=0.005 Sum_probs=92.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCChHHHHHHHHHchhC--CCCCC-CCHHHHHHHH
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGR-MAT----TFHFNHLLSCQATCGIPEVAFATFENMEYG--EDYMK-PDTETYNCVI 74 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv-~Pd----~~tyn~LI~~yak~G~~e~A~~lf~~M~~~--~~gi~-Pd~~tyn~LI 74 (670)
..|...|++++|+..|.+.....- .++ ..+++.+-..|...|++++|...|++.... ..+-. ....+|..+-
T Consensus 17 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 96 (164)
T 3ro3_A 17 NTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLG 96 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 356788999999999988764311 112 247788888999999999999999986520 01111 1156788888
Q ss_pred HHHHHcCCcccHHHHHHHHHHhHhcc--CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005912 75 QAYTRAESYDRVQDVAELLGMMVEDH--KRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQN 135 (670)
Q Consensus 75 ~ay~k~g~~~~~~eAl~lf~eM~~~~--~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~ 135 (670)
..|...| +.++|...|.+..... .+-.+ ...++..+-..|...|++++|.+.+....+
T Consensus 97 ~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 97 NTYTLLQ---DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHh---hHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8899999 7888888887765310 11111 245677888899999999999999988765
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.60 E-value=0.098 Score=49.30 Aligned_cols=122 Identities=14% Similarity=-0.016 Sum_probs=87.6
Q ss_pred HHHhcCChHHHHHHHHHHHHcCC-CC---C-----------HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHH
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGR-MA---T-----------TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTE 68 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv-~P---d-----------~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~ 68 (670)
.|.+.|++++|+..|.+.....- .| . ...|..+-.+|.+.|++++|...|+.... . -..+..
T Consensus 47 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~-~p~~~~ 123 (198)
T 2fbn_A 47 EFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK--I-DKNNVK 123 (198)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H-STTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--h-CcccHH
Confidence 56788999999999999886421 12 1 27788888899999999999999999873 1 134678
Q ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHH-HHHHHHHH
Q 005912 69 TYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAI-RHFRALQN 135 (670)
Q Consensus 69 tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~-~lf~~M~~ 135 (670)
.|..+-.+|...| +.++|+..|.+... +.| +...+..+-.++...++..++. ..|..|..
T Consensus 124 ~~~~lg~~~~~~~---~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 124 ALYKLGVANMYFG---FLEEAKENLYKAAS----LNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHHHHHHT---CHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHcc---cHHHHHHHHHHHHH----HCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8999999999999 78899999999876 345 4567777777777777666665 44554443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.081 Score=54.29 Aligned_cols=123 Identities=11% Similarity=-0.034 Sum_probs=95.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCH----HHHHHHHHHHH
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT----ETYNCVIQAYT 78 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~----~tyn~LI~ay~ 78 (670)
..|...|++++|.++|+.+...+ |+....-.+-..|.+.+++++|...|+.... .|+. ..+..+=.++.
T Consensus 110 ~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-----~~d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 110 ACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-----WPDKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-----CSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-----cCCcccHHHHHHHHHHHHH
Confidence 45788999999999999887643 6544555566689999999999999986652 2332 35777778899
Q ss_pred HcCCcccHHHHHHHHHHhHhccCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcc
Q 005912 79 RAESYDRVQDVAELLGMMVEDHKRLQPN--VKTYALLVECFTKYCAVTEAIRHFRALQNYE 137 (670)
Q Consensus 79 k~g~~~~~~eAl~lf~eM~~~~~gi~Pd--~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g 137 (670)
+.| +.++|+..|++-.. ....|. .......-.++.+.|+.++|..+|+.+....
T Consensus 183 ~LG---~~~eAl~~l~~a~~--g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 183 NLA---LFTEAERRLTEAND--SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HTT---CHHHHHHHHHHHHT--STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HCC---CHHHHHHHHHHHhc--CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 999 89999999999876 444364 2355666678889999999999999998753
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.011 Score=50.99 Aligned_cols=86 Identities=17% Similarity=0.016 Sum_probs=62.9
Q ss_pred hcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcc
Q 005912 7 KAGDHSNALEIAYEMEAAGR--MATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 84 (670)
Q Consensus 7 k~G~~~~Al~lf~~M~~~Gv--~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~ 84 (670)
..|++++|+..|++..+.+. .-+...|..|-..|.+.|++++|...|++... .. .-+...|..+-.+|.+.|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~-p~~~~~~~~l~~~~~~~g--- 75 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVK--QF-PNHQALRVFYAMVLYNLG--- 75 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC-TTCHHHHHHHHHHHHHHT---
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hC-CCchHHHHHHHHHHHHcC---
Confidence 46788889999988887541 22456778888888999999999999998763 11 234778888888899999
Q ss_pred cHHHHHHHHHHhHh
Q 005912 85 RVQDVAELLGMMVE 98 (670)
Q Consensus 85 ~~~eAl~lf~eM~~ 98 (670)
+.++|+..|.+...
T Consensus 76 ~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 76 RYEQGVELLLKIIA 89 (117)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 78889998888766
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=95.54 E-value=0.12 Score=46.11 Aligned_cols=96 Identities=10% Similarity=-0.033 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHH
Q 005912 31 FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKT 109 (670)
Q Consensus 31 ~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~T 109 (670)
..+..+-..|.+.|++++|...|+.... .. ..+...|..+-.+|.+.| +.++|+..|..... +.| +...
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~-p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~----~~p~~~~~ 88 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCM--LD-HYDARYFLGLGACRQSLG---LYEQALQSYSYGAL----MDINEPRF 88 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC-TTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HCTTCTHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHH--hC-CccHHHHHHHHHHHHHHh---hHHHHHHHHHHHHh----cCCCCcHH
Confidence 3455566778899999999999999763 11 236788888989999999 78899999999877 234 4567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005912 110 YALLVECFTKYCAVTEAIRHFRALQNY 136 (670)
Q Consensus 110 y~~LL~a~ak~g~~d~A~~lf~~M~~~ 136 (670)
|..+-.+|...|++++|...|+...+.
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 89 PFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888889999999999999999988764
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.12 Score=44.24 Aligned_cols=96 Identities=19% Similarity=0.107 Sum_probs=72.5
Q ss_pred HHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCC
Q 005912 72 CVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV----KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEG 147 (670)
Q Consensus 72 ~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~----~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g 147 (670)
.+-..+.+.| +.++|+..|...... .|+. ..+..+-.+|.+.|++++|...|....+.......
T Consensus 7 ~~a~~~~~~~---~~~~A~~~~~~~~~~----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~----- 74 (129)
T 2xev_A 7 NVAFDALKNG---KYDDASQLFLSFLEL----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDK----- 74 (129)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHH----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT-----
T ss_pred HHHHHHHHhC---CHHHHHHHHHHHHHH----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcc-----
Confidence 3445667788 788999999988762 2432 46777888899999999999999998875432110
Q ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 148 NFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 148 ~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
.+.++..+-.+|.+.|++++|...|+...+..
T Consensus 75 -~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 75 -AAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred -cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 12267788889999999999999999988764
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.15 Score=52.25 Aligned_cols=127 Identities=17% Similarity=0.091 Sum_probs=94.6
Q ss_pred HHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC----HHHHH
Q 005912 36 LLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN----VKTYA 111 (670)
Q Consensus 36 LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd----~~Ty~ 111 (670)
+...|...|++++|.++|+.+. .. .|+....-.+-..|.+.+ +..+|+..|..... .|+ ...+.
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~--~~--~p~~~~~~~~a~l~~~~~---r~~dA~~~l~~a~~-----~~d~~~~~~a~~ 175 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAP--VA--GSEHLVAWMKAVVYGAAE---RWTDVIDQVKSAGK-----WPDKFLAGAAGV 175 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSC--CT--TCHHHHHHHHHHHHHHTT---CHHHHHHHHTTGGG-----CSCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH--hc--CCchHHHHHHHHHHHHcC---CHHHHHHHHHHhhc-----cCCcccHHHHHH
Confidence 5567888999999999999987 32 355445555555777888 78899999985544 232 23677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 112 LLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 112 ~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
.+=.++.+.|++++|+..|+........|... ++....+-.++.+.|+.++|..+|+++...+
T Consensus 176 ~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~------~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 176 AHGVAAANLALFTEAERRLTEANDSPAGEACA------RAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTH------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcCCCCcccc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 77888999999999999999887432212211 1255667778899999999999999998876
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=95.40 E-value=0.12 Score=56.84 Aligned_cols=117 Identities=14% Similarity=0.027 Sum_probs=89.1
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCc
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESY 83 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~ 83 (670)
.|.+.|++++|+..|++..+. -.-+...|+.+-..|.+.|++++|...|++..+ . -..+..+|+.+-.+|.+.|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l-~p~~~~~~~~lg~~~~~~g-- 88 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--L-DKKYIKGYYRRAASNMALG-- 88 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--S-CTTCHHHHHHHHHHHHHHT--
T ss_pred HHHHhCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--h-CCCCHHHHHHHHHHHHHcC--
Confidence 466789999999999988875 233588999999999999999999999999873 2 1235788999999999999
Q ss_pred ccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHH--HHHcCCHHHHHHHHH
Q 005912 84 DRVQDVAELLGMMVEDHKRLQPN-VKTYALLVEC--FTKYCAVTEAIRHFR 131 (670)
Q Consensus 84 ~~~~eAl~lf~eM~~~~~gi~Pd-~~Ty~~LL~a--~ak~g~~d~A~~lf~ 131 (670)
+.++|++.|++..+. .|+ ...+..+-.+ +.+.|++++|.++++
T Consensus 89 -~~~eA~~~~~~al~~----~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 -KFRAALRDYETVVKV----KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp -CHHHHHHHHHHHHHH----STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred -CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 889999999998762 332 2344444444 888899999999987
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=95.31 E-value=1.8 Score=44.57 Aligned_cols=228 Identities=11% Similarity=-0.012 Sum_probs=145.8
Q ss_pred HhcCC-hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcC--ChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHH----
Q 005912 6 CKAGD-HSNALEIAYEMEAAGRMAT-TFHFNHLLSCQATCG--IPEVAFATFENMEYGEDYMKPDTETYNCVIQAY---- 77 (670)
Q Consensus 6 ~k~G~-~~~Al~lf~~M~~~Gv~Pd-~~tyn~LI~~yak~G--~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay---- 77 (670)
.+.|. -++|+.+++.+... -|+ ...||.-=..+...| +++++..+++.+.. . ...+...||.--..+
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~--~-nPk~y~aW~~R~~iL~~~~ 117 (306)
T 3dra_A 43 MKAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIAL--D-NEKNYQIWNYRQLIIGQIM 117 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH--H-CTTCCHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHH--H-CcccHHHHHHHHHHHHHHH
Confidence 34444 46899999888864 343 445666666666677 99999999999873 1 134556676554444
Q ss_pred HHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHccCCCcccccCCCCchHHHH
Q 005912 78 TRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVT--EAIRHFRALQNYEGGTKVLHNEGNFGDPLSL 155 (670)
Q Consensus 78 ~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d--~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~ 155 (670)
...+...+.++++.+++.+.+. -.-|-.+|+.---.+.+.|..+ ++++.+..+.+..+...- .|+-
T Consensus 118 ~~l~~~~~~~~EL~~~~~~l~~---~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~s---------AW~~ 185 (306)
T 3dra_A 118 ELNNNDFDPYREFDILEAMLSS---DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNS---------AWSH 185 (306)
T ss_dssp HHTTTCCCTHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHH---------HHHH
T ss_pred HhccccCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHH---------HHHH
Confidence 4441111678999999999872 2347888988888888899888 999999999876543221 5665
Q ss_pred HHHHHHHcCC------HHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCc-H
Q 005912 156 YLRALCREGR------IIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGL-T 228 (670)
Q Consensus 156 LI~ay~k~G~------~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~-~ 228 (670)
---.+.+.|+ ++++++.++.+...+. ...+. |+-+-.. +.+.|. .
T Consensus 186 R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p--~n~Sa-----W~y~~~l---------------------l~~~~~~~ 237 (306)
T 3dra_A 186 RFFLLFSKKHLATDNTIDEELNYVKDKIVKCP--QNPST-----WNYLLGI---------------------HERFDRSI 237 (306)
T ss_dssp HHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCS--SCHHH-----HHHHHHH---------------------HHHTTCCG
T ss_pred HHHHHHhccccchhhhHHHHHHHHHHHHHhCC--CCccH-----HHHHHHH---------------------HHhcCCCh
Confidence 5455555565 8889999998887763 22221 2221111 122222 3
Q ss_pred HHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005912 229 GERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNE 282 (670)
Q Consensus 229 ~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~ 282 (670)
.+...+.......+ .++ ....-.++.+.+.|.+.|+.++|.++++.+...
T Consensus 238 ~~~~~~~~~~~~~~-~~~---~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~ 287 (306)
T 3dra_A 238 TQLEEFSLQFVDLE-KDQ---VTSSFALETLAKIYTQQKKYNESRTVYDLLKSK 287 (306)
T ss_dssp GGGHHHHHTTEEGG-GTE---ESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcc-CCC---CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 33445555544322 011 222233456778999999999999999998763
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.38 Score=52.16 Aligned_cols=193 Identities=6% Similarity=-0.000 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHccCCCccc
Q 005912 68 ETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY----CAVTEAIRHFRALQNYEGGTKVL 143 (670)
Q Consensus 68 ~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~----g~~d~A~~lf~~M~~~g~~~~v~ 143 (670)
..+..|-..|.+.|...+..+|++.|..-.+ .| .++...+..|-..|... ++.++|...|+... .+.+.
T Consensus 177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~--~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~~~--- 249 (452)
T 3e4b_A 177 ICYVELATVYQKKQQPEQQAELLKQMEAGVS--RG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGYPA--- 249 (452)
T ss_dssp THHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--TT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGSTH---
T ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHHHH--CC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCCHH---
Confidence 3788888888888855568899999999887 44 34555545555666544 68999999999876 33221
Q ss_pred ccCCCCchHHHHHHHH-H--HHcCCHHHHHHHHHHHhhCCCCCCCchH-HHHhHHHH------HHHHHHHHHHHHHHcCC
Q 005912 144 HNEGNFGDPLSLYLRA-L--CREGRIIELLEALEAMAKDNQPVPPRAM-ILSRKYRT------LVSSWIEPLQEEAELGY 213 (670)
Q Consensus 144 ~~~g~~pdtyn~LI~a-y--~k~G~~eeA~~vf~~M~~~gi~i~p~~~-i~~~ty~~------ll~a~~~ll~~m~~~G~ 213 (670)
.++.|=.. | ...|++++|...|+.-.+.|. +... .++..|.. -...+...+.... .|.
T Consensus 250 --------a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~g~ 317 (452)
T 3e4b_A 250 --------SWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQ---PRAELLLGKLYYEGKWVPADAKAAEAHFEKAV-GRE 317 (452)
T ss_dssp --------HHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT-TTC
T ss_pred --------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh-CCC
Confidence 45555554 3 458899999999999888874 3332 22222221 2233444444444 332
Q ss_pred CHHH---HHHHHHc----CCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 005912 214 EIDY---IARYISE----GGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPA 285 (670)
Q Consensus 214 ~pd~---i~~~~~~----~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~ 285 (670)
+.. +-.++.. ....++|..+|+.-.+.|. | ..+..|-..+..+.....+..+|..+|..-...|..
T Consensus 318 -~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-~----~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 318 -VAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-N----SADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp -HHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-T----THHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred -HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-H----HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 222 1233333 2378889999998877653 2 222222211122222356888999998888877764
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.24 E-value=0.13 Score=44.76 Aligned_cols=96 Identities=9% Similarity=-0.058 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCC
Q 005912 69 TYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEG 147 (670)
Q Consensus 69 tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g 147 (670)
.+..+-..+.+.| +.++|+..|++..+ ..| +...|..+-.++...|++++|...|+...+.....
T Consensus 19 ~~~~~g~~~~~~g---~~~~A~~~~~~al~----~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~------- 84 (121)
T 1hxi_A 19 NPMEEGLSMLKLA---NLAEAALAFEAVCQ----KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD------- 84 (121)
T ss_dssp CHHHHHHHHHHTT---CHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred hHHHHHHHHHHcC---CHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------
Confidence 3455566778888 78899999988876 345 56777888888899999999999999887753221
Q ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 148 NFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 148 ~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
+..|..+-..|.+.|++++|...|+...+.+
T Consensus 85 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 85 --IAVHAALAVSHTNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 2278888888999999999999999876643
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.3 Score=41.76 Aligned_cols=90 Identities=13% Similarity=0.000 Sum_probs=58.6
Q ss_pred HHHHHHHcCChHHHHHHHHHchhCCCCCCCCH----HHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC----H
Q 005912 36 LLSCQATCGIPEVAFATFENMEYGEDYMKPDT----ETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN----V 107 (670)
Q Consensus 36 LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~----~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd----~ 107 (670)
+-..+.+.|++++|...|+.... . .|+. ..|..+-.+|.+.| +.++|+..|...... .|+ .
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~--~--~p~~~~~~~~~~~lg~~~~~~~---~~~~A~~~~~~~~~~----~p~~~~~~ 76 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLE--L--YPNGVYTPNALYWLGESYYATR---NFQLAEAQFRDLVSR----YPTHDKAA 76 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--H--CSSSTTHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHH----CTTSTTHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH--H--CCCCcccHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHH----CCCCcccH
Confidence 34456667777777777777652 1 2222 35666667777777 677777777777652 233 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005912 108 KTYALLVECFTKYCAVTEAIRHFRALQNY 136 (670)
Q Consensus 108 ~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~ 136 (670)
.++..+-.+|.+.|+.++|...|+.+...
T Consensus 77 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 77 GGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 55666667777788888888877777664
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.05 E-value=0.23 Score=52.41 Aligned_cols=212 Identities=8% Similarity=-0.090 Sum_probs=125.2
Q ss_pred HHHHHcCChHHHHHHHHHchhCCCCCCCC---------------HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCC
Q 005912 38 SCQATCGIPEVAFATFENMEYGEDYMKPD---------------TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR 102 (670)
Q Consensus 38 ~~yak~G~~e~A~~lf~~M~~~~~gi~Pd---------------~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~g 102 (670)
..+.+.|++++|.+.|..... ...-..+ ...+..|...|.+.| +.++|.+++...... .+
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~---~~~~a~~~~~~~~~~-~~ 86 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLD-KDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMG---AKDKLREFIPHSTEY-MM 86 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH-SCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHTHHH-HH
T ss_pred HHHHHCCCHHHHHHHHHHHHh-hCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHH-HH
Confidence 346788999999999999874 1111111 134788999999999 788999999887652 11
Q ss_pred CCCCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005912 103 LQPNVKT----YALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAK 178 (670)
Q Consensus 103 i~Pd~~T----y~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~ 178 (670)
-.++..+ .+.+-..+...|..+.+..++............ ......++..|...|...|++++|..+++....
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKR---VFLKHSLSIKLATLHYQKKQYKDSLALINDLLR 163 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSC---CSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCc---cHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 2233322 222223334578899999999877642111000 000112788899999999999999999998754
Q ss_pred CCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccC--CCCCCcccchhhhhH
Q 005912 179 DNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKT--PLDPDAVGFIYSNPM 256 (670)
Q Consensus 179 ~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~--gi~Pd~d~~ty~~LI 256 (670)
.-......... .-.+..+. ..|...|....|..+++..... .+ +++ +.....+.
T Consensus 164 ~~~~~~~~~~~-~~~~~~~~---------------------~~~~~~~~~~~A~~~~~~al~~~~~~-~~~-~~~~~~~~ 219 (434)
T 4b4t_Q 164 EFKKLDDKPSL-VDVHLLES---------------------KVYHKLRNLAKSKASLTAARTAANSI-YCP-TQTVAELD 219 (434)
T ss_dssp HHTTSSCSTHH-HHHHHHHH---------------------HHHHHTTCHHHHHHHHHHHHHHHHHS-CCC-HHHHHHHH
T ss_pred HHHhcccchhH-HHHHHHHH---------------------HHHHHhCcHHHHHHHHHHHHHHhhcC-CCc-hHHHHHHH
Confidence 32111222111 01122222 3346677888888887765421 11 111 01111122
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 005912 257 ETSFKQRCLEDGKKYHRKLLRTLQN 281 (670)
Q Consensus 257 e~lv~~~~~~G~~e~A~~Lf~~M~~ 281 (670)
..+...+...|+.+.|...|.+...
T Consensus 220 ~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 220 LMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2233667788999999888876653
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=95.02 E-value=0.22 Score=54.31 Aligned_cols=130 Identities=10% Similarity=-0.057 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC----------------HHHHHHHHHHHHHcCCcccHHHHHHHH
Q 005912 30 TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD----------------TETYNCVIQAYTRAESYDRVQDVAELL 93 (670)
Q Consensus 30 ~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd----------------~~tyn~LI~ay~k~g~~~~~~eAl~lf 93 (670)
...|+.+-..|.+.|++++|...|++... +.|+ ...|+.+-.+|.+.| +.++|+..|
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~----~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g---~~~~A~~~~ 340 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVS----WLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLR---EYTKAVECC 340 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH----HhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhc---CHHHHHHHH
Confidence 45677788889999999999999998763 1232 588999999999999 788999999
Q ss_pred HHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHH-H
Q 005912 94 GMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELL-E 171 (670)
Q Consensus 94 ~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~-~ 171 (670)
.+..+ +.| +...|..+-.+|.+.|++++|...|....+..... +..|+.+-..+.+.|+.+++. .
T Consensus 341 ~~al~----~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~---------~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 341 DKALG----LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN---------KAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp HHHHH----HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-------------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh----cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99887 234 57889999999999999999999999988753211 117889999999999988776 4
Q ss_pred HHHHHhhC
Q 005912 172 ALEAMAKD 179 (670)
Q Consensus 172 vf~~M~~~ 179 (670)
++..|..+
T Consensus 408 ~~~~~f~k 415 (457)
T 1kt0_A 408 IYANMFKK 415 (457)
T ss_dssp HHHHC---
T ss_pred HHHHHHhh
Confidence 56666443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.3 Score=42.76 Aligned_cols=94 Identities=15% Similarity=0.176 Sum_probs=41.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC----HH
Q 005912 34 NHLLSCQATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN----VK 108 (670)
Q Consensus 34 n~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd----~~ 108 (670)
.-|=+.|.+.|++++|...|++... +.| +...|+.+=.+|.+.| +.++|++.|.+..+......++ ..
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~----~~p~~~~~~~nlg~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIE----LDPSNITFYNNKAAVYFEEK---KFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHhHHHHHHHhh---hHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 3333444455555555555554431 112 2444555555555555 4445554444443210111111 12
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005912 109 TYALLVECFTKYCAVTEAIRHFRALQ 134 (670)
Q Consensus 109 Ty~~LL~a~ak~g~~d~A~~lf~~M~ 134 (670)
+|..+-.++...|++++|.+.|....
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal 110 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSL 110 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444455555555555555555444
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=94.74 E-value=0.32 Score=48.99 Aligned_cols=97 Identities=11% Similarity=0.085 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccc
Q 005912 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLH 144 (670)
Q Consensus 66 d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~ 144 (670)
+...|..+-..|.+.| +.++|+..|.+... ..| +...|..+-.+|.+.|++++|...+....+.... +
T Consensus 3 ~a~~~~~~g~~~~~~g---~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~--- 71 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGR---KYPEAAACYGRAIT----RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-S--- 71 (281)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-C---
T ss_pred hHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH----hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-C---
Confidence 3455666666666666 56666667766654 233 4566666666677777777777777666553211 1
Q ss_pred cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005912 145 NEGNFGDPLSLYLRALCREGRIIELLEALEAMAK 178 (670)
Q Consensus 145 ~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~ 178 (670)
+..|+.+-.+|.+.|++++|...|+...+
T Consensus 72 -----~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 72 -----VKAHFFLGQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11566666667777777777777766544
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=94.67 E-value=0.18 Score=44.25 Aligned_cols=104 Identities=10% Similarity=0.051 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCccccc
Q 005912 67 TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHN 145 (670)
Q Consensus 67 ~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~ 145 (670)
...|.-|=..|.+.| +.++|+..|.+..+ +.| +..+|..+-.+|.+.|++++|.+.|....+........
T Consensus 8 A~a~~~lG~~~~~~~---~~~~A~~~y~~Al~----~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~-- 78 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQK---DFEKAHVHYDKAIE----LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRAD-- 78 (127)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHH----hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchh--
Confidence 356777778889999 78899999999877 345 47788999999999999999999999887642211000
Q ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 005912 146 EGNFGDPLSLYLRALCREGRIIELLEALEAMAKD 179 (670)
Q Consensus 146 ~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~ 179 (670)
+.....+|..+=..|...|++++|.+.|+.-...
T Consensus 79 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 79 YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 0000015666777888999999999999987654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.57 E-value=0.2 Score=43.68 Aligned_cols=92 Identities=16% Similarity=0.051 Sum_probs=71.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHH
Q 005912 34 NHLLSCQATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYA 111 (670)
Q Consensus 34 n~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~ 111 (670)
-.+-..+.+.|++++|...|++... ..| +...|..+=.+|.+.| +.++|+..|.+..+ +.| +...+.
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~----~~P~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~----l~P~~~~~~~ 89 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQ----KEPEREEAWRSLGLTQAENE---KDGLAIIALNHARM----LDPKDIAVHA 89 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HCTTCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH----hCCCCHHHHH
Confidence 3445667788999999999988763 233 6778888888888888 78889989988876 345 466778
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Q 005912 112 LLVECFTKYCAVTEAIRHFRALQNY 136 (670)
Q Consensus 112 ~LL~a~ak~g~~d~A~~lf~~M~~~ 136 (670)
.+-.+|.+.|++++|...|+...+.
T Consensus 90 ~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 90 ALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888999999999999887753
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=94.48 E-value=0.096 Score=57.62 Aligned_cols=117 Identities=15% Similarity=0.100 Sum_probs=90.3
Q ss_pred HHHHHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHH
Q 005912 38 SCQATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVE 115 (670)
Q Consensus 38 ~~yak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~ 115 (670)
..|.+.|++++|...|++... +.| +..+|+.+-.+|.+.| +.++|+..|.+..+ +.| +..+|..+-.
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~----~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~----l~p~~~~~~~~lg~ 82 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIE----LNPSNAIYYGNRSLAYLRTE---CYGYALGDATRAIE----LDKKYIKGYYRRAA 82 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----SCTTCHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHH----hCCccHHHHHHHHHHHHHhc---CHHHHHHHHHHHHH----hCCCCHHHHHHHHH
Confidence 345678999999999998763 134 5889999999999999 78999999999987 345 5788899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHH--HHHcCCHHHHHHHHH
Q 005912 116 CFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRA--LCREGRIIELLEALE 174 (670)
Q Consensus 116 a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~a--y~k~G~~eeA~~vf~ 174 (670)
+|.+.|++++|.+.|+...+..... +..+..+-.+ |.+.|++++|..+++
T Consensus 83 ~~~~~g~~~eA~~~~~~al~~~p~~---------~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 83 SNMALGKFRAALRDYETVVKVKPHD---------KDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTC---------TTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999988753221 1155556555 888999999999988
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.16 E-value=0.29 Score=54.18 Aligned_cols=132 Identities=5% Similarity=-0.147 Sum_probs=94.9
Q ss_pred HHHcCChHHHHHHHHHchhC-CCCC---CCC-HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhcc----CCCCCC-HHH
Q 005912 40 QATCGIPEVAFATFENMEYG-EDYM---KPD-TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDH----KRLQPN-VKT 109 (670)
Q Consensus 40 yak~G~~e~A~~lf~~M~~~-~~gi---~Pd-~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~----~gi~Pd-~~T 109 (670)
+-..|++++|..++++.... ..-+ .|+ ..++|.|...|...| +.++|..++.+...-. ..-.|+ ..+
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g---~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 395 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQ---AYEEASHYARRMVDGYMKLYHHNNAQLGMA 395 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 55679999999999876531 1222 233 578999999999999 6778888777654310 122344 467
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCC-Cch---HHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 005912 110 YALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGN-FGD---PLSLYLRALCREGRIIELLEALEAMAKD 179 (670)
Q Consensus 110 y~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~-~pd---tyn~LI~ay~k~G~~eeA~~vf~~M~~~ 179 (670)
|+.|-..|...|++++|+.++.+...-... . .|. .|+ +.+.|-.++...|.+++|..+|..+++.
T Consensus 396 l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~---~--lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 396 VMRAGLTNWHAGHIEVGHGMICKAYAILLV---T--HGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---H--TCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHH---H--hCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999877642100 0 111 122 6778888889999999999999998764
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=94.11 E-value=0.084 Score=45.32 Aligned_cols=87 Identities=10% Similarity=0.064 Sum_probs=67.3
Q ss_pred HcCChHHHHHHHHHchhCCCC--CCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHH
Q 005912 42 TCGIPEVAFATFENMEYGEDY--MKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFT 118 (670)
Q Consensus 42 k~G~~e~A~~lf~~M~~~~~g--i~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~a 118 (670)
..|++++|...|++.. ..+ -.-+...|..+-..|.+.| +.++|+..|.+..+ +.| +..+|..+-.+|.
T Consensus 2 ~~g~~~~A~~~~~~al--~~~~~~p~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~ 72 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAI--ASGLQGKDLAECYLGLGSTFRTLG---EYRKAEAVLANGVK----QFPNHQALRVFYAMVLY 72 (117)
T ss_dssp -----CCCHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHH--HcCCCCccHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH----hCCCchHHHHHHHHHHH
Confidence 4588899999999988 332 1224577888999999999 88999999999887 234 4678888999999
Q ss_pred HcCCHHHHHHHHHHHHHcc
Q 005912 119 KYCAVTEAIRHFRALQNYE 137 (670)
Q Consensus 119 k~g~~d~A~~lf~~M~~~g 137 (670)
+.|++++|...|.......
T Consensus 73 ~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 73 NLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHTCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999999887753
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=93.92 E-value=0.54 Score=49.73 Aligned_cols=125 Identities=8% Similarity=-0.027 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHchhC--C----------CCCC-CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhH
Q 005912 31 FHFNHLLSCQATCGIPEVAFATFENMEYG--E----------DYMK-PDTETYNCVIQAYTRAESYDRVQDVAELLGMMV 97 (670)
Q Consensus 31 ~tyn~LI~~yak~G~~e~A~~lf~~M~~~--~----------~gi~-Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~ 97 (670)
..|..+-..|.+.|++++|...|++.... . .... -+..+|+.+-.+|.+.| +.++|+..|.+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g---~~~~A~~~~~~al 300 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMS---DWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhcc---CHHHHHHHHHHHH
Confidence 44677788899999999999999887610 0 0012 24578899999999999 7889999999988
Q ss_pred hccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHH
Q 005912 98 EDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLE 171 (670)
Q Consensus 98 ~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~ 171 (670)
+ +.| +...|..+-.+|.+.|++++|...|+...+..... +..+..+-..+.+.++.+++.+
T Consensus 301 ~----~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~---------~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 301 E----IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED---------KAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp T----TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred H----hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 6 345 57888899999999999999999999988753221 1266777777777777766654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=93.89 E-value=0.34 Score=52.73 Aligned_cols=121 Identities=12% Similarity=0.003 Sum_probs=92.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHH
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMAT--------------TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTE 68 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd--------------~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~ 68 (670)
..|.+.|+++.|+..|.+..+..-... ...|+.+-.+|.+.|++++|...|++... .. ..+..
T Consensus 276 ~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~--~~-p~~~~ 352 (457)
T 1kt0_A 276 TVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG--LD-SANEK 352 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HS-TTCHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cC-CccHH
Confidence 357789999999999998876421111 58888999999999999999999999873 11 33678
Q ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHH-HHHHH
Q 005912 69 TYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN-VKTYALLVECFTKYCAVTEAIR-HFRAL 133 (670)
Q Consensus 69 tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd-~~Ty~~LL~a~ak~g~~d~A~~-lf~~M 133 (670)
.|..+-.+|.+.| +.++|+..|.+..+ +.|+ ...|..+-.++.+.++.+++.+ ++..|
T Consensus 353 a~~~~g~a~~~~g---~~~~A~~~~~~al~----l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 353 GLYRRGEAQLLMN---EFESAKGDFEKVLE----VNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHT----TC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcc---CHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999 78899999999876 4564 4577778888888888776654 34444
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=93.78 E-value=0.36 Score=55.51 Aligned_cols=102 Identities=10% Similarity=0.019 Sum_probs=72.0
Q ss_pred HHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHH
Q 005912 39 CQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFT 118 (670)
Q Consensus 39 ~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~a 118 (670)
....+|+++.|.++.+.+. +...|..|-..+.+.+ +.+.|.++|..+.. |..+...|.
T Consensus 661 ~~l~~~~~~~A~~~~~~~~--------~~~~W~~la~~al~~~---~~~~A~~~y~~~~d-----------~~~l~~l~~ 718 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES--------AEMKWRALGDASLQRF---NFKLAIEAFTNAHD-----------LESLFLLHS 718 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC--------CHHHHHHHHHHHHHTT---CHHHHHHHHHHHTC-----------HHHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHhhC--------cHhHHHHHHHHHHHcC---CHHHHHHHHHHccC-----------hhhhHHHHH
Confidence 3455667777777665444 5678888888888888 77888888887743 445566666
Q ss_pred HcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005912 119 KYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM 176 (670)
Q Consensus 119 k~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M 176 (670)
..|+.+...++-+.....+ -++.-..+|.+.|++++|.+++.++
T Consensus 719 ~~~~~~~~~~~~~~a~~~~--------------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 719 SFNNKEGLVTLAKDAETTG--------------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HTTCHHHHHHHHHHHHHTT--------------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHcC--------------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 6777777666655555533 4677777788888888888888776
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=93.76 E-value=0.23 Score=54.98 Aligned_cols=130 Identities=7% Similarity=-0.115 Sum_probs=94.2
Q ss_pred HHHhcCChHHHHHHHHHHHHc---CCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHchhC----CCCCCCC-HHHHH
Q 005912 4 EDCKAGDHSNALEIAYEMEAA---GRMA----TTFHFNHLLSCQATCGIPEVAFATFENMEYG----EDYMKPD-TETYN 71 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~---Gv~P----d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~----~~gi~Pd-~~tyn 71 (670)
.+-..|++++|+.++++..+. -+-| ...++|.|...|...|++++|..++++.... -..-.|+ ..+||
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355789999999999876642 1222 4568899999999999999999999886530 1122455 47799
Q ss_pred HHHHHHHHcCCcccHHHHHHHHHHhHhcc---CC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005912 72 CVIQAYTRAESYDRVQDVAELLGMMVEDH---KR-LQPN-VKTYALLVECFTKYCAVTEAIRHFRALQNY 136 (670)
Q Consensus 72 ~LI~ay~k~g~~~~~~eAl~lf~eM~~~~---~g-i~Pd-~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~ 136 (670)
.|-..|...| +.++|..+|.+-.+-. -| =.|+ ..+.+.+-.++...+.+.+|+.++..+...
T Consensus 398 nLa~~~~~~G---~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAG---HIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 6777777776543210 11 1233 345667778888999999999999998764
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=93.63 E-value=0.72 Score=46.37 Aligned_cols=97 Identities=14% Similarity=0.078 Sum_probs=76.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-C
Q 005912 29 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-N 106 (670)
Q Consensus 29 d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d 106 (670)
+...+..+-..|.+.|++++|...|++... ..| +...|..+-.+|.+.| +.++|+..|.+..+ +.| +
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~----~~p~~ 71 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAIT----RNPLVAVYYTNRALCYLKMQ---QPEQALADCRRALE----LDGQS 71 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTT----SCTTC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCccHHHHHHHHHHHHHhc---CHHHHHHHHHHHHH----hCCCC
Confidence 456677777888889999999999988763 134 6788888888888888 78888888888765 345 4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005912 107 VKTYALLVECFTKYCAVTEAIRHFRALQNY 136 (670)
Q Consensus 107 ~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~ 136 (670)
...|..+-.+|...|++++|...|....+.
T Consensus 72 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 72 VKAHFFLGQCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 677888888888999999999998887764
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=93.56 E-value=0.14 Score=53.30 Aligned_cols=130 Identities=11% Similarity=-0.043 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHH------------------HHHHHHHHHHHcCCcccHHHHHHH
Q 005912 31 FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTE------------------TYNCVIQAYTRAESYDRVQDVAEL 92 (670)
Q Consensus 31 ~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~------------------tyn~LI~ay~k~g~~~~~~eAl~l 92 (670)
..+..+-..|.+.|++++|...|++... +.|+.. .|+.+-.+|.+.| +.++|+..
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~----~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g---~~~~A~~~ 252 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA----YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLK---RYDEAIGH 252 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH----HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTT---CCHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH----HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcC---CHHHHHHH
Confidence 3456666677788889999998888552 245443 7888888999999 67899999
Q ss_pred HHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHH-HHHcCCHHHHH
Q 005912 93 LGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRA-LCREGRIIELL 170 (670)
Q Consensus 93 f~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~a-y~k~G~~eeA~ 170 (670)
|.+..+ +.| +...|..+-.+|...|++++|...|....+..... +..++.|-.. ....+..+++.
T Consensus 253 ~~~al~----~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~---------~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 253 CNIVLT----EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD---------KAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHHHHH----HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------
T ss_pred HHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 998876 235 67889999999999999999999999886543211 1144445444 33456677888
Q ss_pred HHHHHHhhCC
Q 005912 171 EALEAMAKDN 180 (670)
Q Consensus 171 ~vf~~M~~~g 180 (670)
.+|..|....
T Consensus 320 ~~~~~~l~~~ 329 (338)
T 2if4_A 320 EMYKGIFKGK 329 (338)
T ss_dssp ----------
T ss_pred HHHHHhhCCC
Confidence 8888886553
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=93.22 E-value=0.49 Score=50.02 Aligned_cols=116 Identities=12% Similarity=-0.003 Sum_probs=88.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHc--------------CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCH
Q 005912 3 AEDCKAGDHSNALEIAYEMEAA--------------GRM-ATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT 67 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~--------------Gv~-Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~ 67 (670)
..|.+.|++++|+..|++..+. ... -+...|+.+-.+|.+.|++++|...|++.. ... .-+.
T Consensus 231 ~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al--~~~-p~~~ 307 (370)
T 1ihg_A 231 NTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL--EID-PSNT 307 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--TTC-TTCH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH--HhC-chhH
Confidence 3567899999999999887751 012 245678888899999999999999999988 221 2367
Q ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 005912 68 ETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIR 128 (670)
Q Consensus 68 ~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~ 128 (670)
..|..+-.+|.+.| +.++|+..|.+..+ +.| +...+..+-.++.+.++.+++.+
T Consensus 308 ~a~~~lg~~~~~~g---~~~eA~~~l~~Al~----l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 308 KALYRRAQGWQGLK---EYDQALADLKKAQE----IAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcc---CHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999 78899999999876 345 45566666666666666665543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=93.07 E-value=1.3 Score=39.43 Aligned_cols=119 Identities=8% Similarity=-0.023 Sum_probs=94.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHH--
Q 005912 2 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR-- 79 (670)
Q Consensus 2 I~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k-- 79 (670)
..+..-.+++++|+..|++..+.|. |... |=..|...+.+++|...|++-.. .-+...++.|=..|..
T Consensus 2 ~~G~g~~~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~-----~g~~~a~~~Lg~~y~~G~ 71 (138)
T 1klx_A 2 VGGGTVKKDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACE-----LNSGNGCRFLGDFYENGK 71 (138)
T ss_dssp -CCSSHHHHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHCS
T ss_pred CCCcCCccCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHc-----CCCHHHHHHHHHHHHcCC
Confidence 4455566789999999999999883 3333 66667777889999999999873 3577888888888877
Q ss_pred --cCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHccC
Q 005912 80 --AESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK----YCAVTEAIRHFRALQNYEG 138 (670)
Q Consensus 80 --~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak----~g~~d~A~~lf~~M~~~g~ 138 (670)
.+ +..+|++.|.+-.+ .| +...+..|-..|.. .++.++|...|+...+.|.
T Consensus 72 g~~~---d~~~A~~~~~~Aa~--~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 72 YVKK---DLRKAAQYYSKACG--LN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp SSCC---CHHHHHHHHHHHHH--TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred CCCc---cHHHHHHHHHHHHc--CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 55 79999999999887 43 56777888888888 8999999999999887653
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=92.89 E-value=1.1 Score=40.23 Aligned_cols=89 Identities=12% Similarity=0.055 Sum_probs=61.2
Q ss_pred HHHhcCChHHHHHHHHHHHHc-------C----------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC
Q 005912 4 EDCKAGDHSNALEIAYEMEAA-------G----------RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD 66 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~-------G----------v~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd 66 (670)
.|.+.|+++.|+..|.+.... . -.-+...|+.+-.+|.+.|++++|...|+.... .. ..+
T Consensus 20 ~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~--~~-p~~ 96 (162)
T 3rkv_A 20 ELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK--RE-ETN 96 (162)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HS-TTC
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh--cC-Ccc
Confidence 467788899998888876653 0 011235667777777788888888888877652 11 234
Q ss_pred HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHh
Q 005912 67 TETYNCVIQAYTRAESYDRVQDVAELLGMMVE 98 (670)
Q Consensus 67 ~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~ 98 (670)
...|..+-.+|...| +.++|+..|.+...
T Consensus 97 ~~a~~~~g~~~~~~g---~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 97 EKALFRRAKARIAAW---KLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh---cHHHHHHHHHHHHh
Confidence 667777777788888 67777777777765
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=92.43 E-value=1 Score=40.50 Aligned_cols=99 Identities=11% Similarity=0.021 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHchhC-------CCC--------CCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHH
Q 005912 31 FHFNHLLSCQATCGIPEVAFATFENMEYG-------EDY--------MKPDTETYNCVIQAYTRAESYDRVQDVAELLGM 95 (670)
Q Consensus 31 ~tyn~LI~~yak~G~~e~A~~lf~~M~~~-------~~g--------i~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~e 95 (670)
..+...=..|.+.|++++|...|.+.... ... -.-+...|..+-.+|.+.| +.++|+..+..
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~---~~~~A~~~~~~ 88 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIG---DLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHT---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 45666677888999999999999887620 000 0123467899999999999 78899999999
Q ss_pred hHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005912 96 MVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNY 136 (670)
Q Consensus 96 M~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~ 136 (670)
... +.| +...|..+-.+|...|++++|...|......
T Consensus 89 al~----~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 89 VLK----REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHH----HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHh----cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 877 234 5788999999999999999999999998874
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.24 E-value=0.31 Score=40.32 Aligned_cols=65 Identities=6% Similarity=-0.008 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHh
Q 005912 28 ATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE 98 (670)
Q Consensus 28 Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~ 98 (670)
++...|..+-..|.+.|++++|...|++... . -..+...|..+-.+|.+.| +.++|+..|.+...
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~-~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLIT--A-QPQNPVGYSNKAMALIKLG---EYTQAIQMCQQGLR 66 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--c-CCCCHHHHHHHHHHHHHhc---CHHHHHHHHHHHHH
Confidence 3456677788888899999999999988763 1 1236778888888899999 78899999998876
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.86 E-value=0.12 Score=42.81 Aligned_cols=66 Identities=15% Similarity=0.126 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcc
Q 005912 65 PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYE 137 (670)
Q Consensus 65 Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g 137 (670)
++...|..+-..+.+.| +.++|+..|.+... +.| +...|..+-.+|.+.|++++|...|....+..
T Consensus 2 ~~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQG---LYREAVHCYDQLIT----AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp THHHHHHHHHHHHHTTT---CHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHHHHHcC---CHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 45677888888999999 78899999999876 234 67888899999999999999999999988753
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=91.82 E-value=0.26 Score=51.32 Aligned_cols=120 Identities=9% Similarity=-0.004 Sum_probs=71.1
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHH------------------HHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATTF------------------HFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 65 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~------------------tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P 65 (670)
.|.+.|++++|+..|.+.... .|+.. .|+.+-.+|.+.|++++|...|++... +.|
T Consensus 188 ~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~----~~p 261 (338)
T 2if4_A 188 SLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT----EEE 261 (338)
T ss_dssp HTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH----HCT
T ss_pred HHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCC
Confidence 456789999999999987653 35443 778888899999999999999999763 234
Q ss_pred -CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHH-HHHHHHHH-HHHcCCHHHHHHHHHHHHHc
Q 005912 66 -DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK-TYALLVEC-FTKYCAVTEAIRHFRALQNY 136 (670)
Q Consensus 66 -d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~-Ty~~LL~a-~ak~g~~d~A~~lf~~M~~~ 136 (670)
+...|..+-.+|...| +.++|+..|.+..+ +.|+.. .+..|... ....+..+.+..+|..|...
T Consensus 262 ~~~~a~~~lg~a~~~~g---~~~~A~~~l~~al~----l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 262 KNPKALFRRGKAKAELG---QMDSARDDFRKAQK----YAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp TCHHHHHHHHHHHHTTT---CHHHHHHHHHHTTC----------------------------------------
T ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 6788999999999999 78999999999854 456543 33333333 23455667777788777653
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=91.41 E-value=1.9 Score=40.21 Aligned_cols=98 Identities=16% Similarity=-0.005 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005912 69 TYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN-------------VKTYALLVECFTKYCAVTEAIRHFRALQN 135 (670)
Q Consensus 69 tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd-------------~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~ 135 (670)
.+...=..+.+.| +.++|+..|++-.+ +.|+ ...|+.+-.++.+.|++++|...++....
T Consensus 13 ~~~~~G~~l~~~g---~~eeAi~~Y~kAL~----l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 13 LALSDAQRQLVAG---EYDEAAANCRRAME----ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHT---CHHHHHHHHHHHHH----HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHh----hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444455567778 78889999988766 3343 23899999999999999999999998887
Q ss_pred ccCCCcccccCCCCch---HH----HHHHHHHHHcCCHHHHHHHHHHHhh
Q 005912 136 YEGGTKVLHNEGNFGD---PL----SLYLRALCREGRIIELLEALEAMAK 178 (670)
Q Consensus 136 ~g~~~~v~~~~g~~pd---ty----n~LI~ay~k~G~~eeA~~vf~~M~~ 178 (670)
. + +.. -...|+ .| +..=.+|...|++++|+..|+...+
T Consensus 86 l-~--n~~--~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 86 Y-F--NRR--GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp H-H--HHH--CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred h-h--hcc--ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4 0 000 001122 66 7777889999999999999997754
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=91.25 E-value=1.8 Score=36.28 Aligned_cols=79 Identities=16% Similarity=0.136 Sum_probs=60.0
Q ss_pred HHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCH
Q 005912 88 DVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRI 166 (670)
Q Consensus 88 eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~ 166 (670)
.|+..|.+..+ ..| +...|..+-..|...|++++|...|....+..... +.+|..+-..|.+.|++
T Consensus 3 ~a~~~~~~al~----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~ 69 (115)
T 2kat_A 3 AITERLEAMLA----QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY---------SVAWKWLGKTLQGQGDR 69 (115)
T ss_dssp CHHHHHHHHHT----TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHH----hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc---------HHHHHHHHHHHHHcCCH
Confidence 36667777765 234 56778888888999999999999999888753211 22788888899999999
Q ss_pred HHHHHHHHHHhhC
Q 005912 167 IELLEALEAMAKD 179 (670)
Q Consensus 167 eeA~~vf~~M~~~ 179 (670)
++|...|+...+.
T Consensus 70 ~~A~~~~~~al~~ 82 (115)
T 2kat_A 70 AGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=90.80 E-value=5.5 Score=43.70 Aligned_cols=21 Identities=10% Similarity=-0.078 Sum_probs=15.2
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 005912 4 EDCKAGDHSNALEIAYEMEAA 24 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~ 24 (670)
-+.+.|+++.|..+|......
T Consensus 222 ~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 222 YLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhC
Confidence 345677888888888877665
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=90.57 E-value=17 Score=37.24 Aligned_cols=216 Identities=9% Similarity=0.040 Sum_probs=132.0
Q ss_pred HHcCCcccHHHHHHHHHHhHhccCCCCCCH-HHHHHHHHHHHHcC--CHHHHHHHHHHHHHccCCCcccccCCCCchHHH
Q 005912 78 TRAESYDRVQDVAELLGMMVEDHKRLQPNV-KTYALLVECFTKYC--AVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLS 154 (670)
Q Consensus 78 ~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~-~Ty~~LL~a~ak~g--~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn 154 (670)
.+.|. .-++|+.++..+.. +.|+. ..|+.-=.++...| .++++++++..+....+.... +|+
T Consensus 43 ~~~~e--~s~~aL~~t~~~L~----~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~---------aW~ 107 (306)
T 3dra_A 43 MKAEE--YSERALHITELGIN----ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQ---------IWN 107 (306)
T ss_dssp HHTTC--CSHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCH---------HHH
T ss_pred HHcCC--CCHHHHHHHHHHHH----HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHH---------HHH
Confidence 34453 45789999999987 56765 45677777777888 999999999999876443222 555
Q ss_pred HHHHHH----HHc---CCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCc
Q 005912 155 LYLRAL----CRE---GRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGL 227 (670)
Q Consensus 155 ~LI~ay----~k~---G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~ 227 (670)
.=-..+ .+. +++++++.+++.+.+.+. -+.-. ..+...+ +.+-|.
T Consensus 108 ~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~p---kny~a--W~~R~~v-----------------------l~~l~~ 159 (306)
T 3dra_A 108 YRQLIIGQIMELNNNDFDPYREFDILEAMLSSDP---KNHHV--WSYRKWL-----------------------VDTFDL 159 (306)
T ss_dssp HHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCT---TCHHH--HHHHHHH-----------------------HHHTTC
T ss_pred HHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCC---CCHHH--HHHHHHH-----------------------HHHhcc
Confidence 533333 445 789999999999988752 22211 1122111 122223
Q ss_pred HH--HHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCC------HHHHHHHHHHHHHCCCCccCCCCHHHHHHHH
Q 005912 228 TG--ERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDG------KKYHRKLLRTLQNEGPAVLGDVSESDYVRVE 299 (670)
Q Consensus 228 ~~--~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~------~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l 299 (670)
.+ ++..+++.+.+.. |. +...|+--- ..+.+.|. ++++++.+..+...... +.+.++..-
T Consensus 160 ~~~~~EL~~~~~~i~~d--~~-N~sAW~~R~----~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-----n~SaW~y~~ 227 (306)
T 3dra_A 160 HNDAKELSFVDKVIDTD--LK-NNSAWSHRF----FLLFSKKHLATDNTIDEELNYVKDKIVKCPQ-----NPSTWNYLL 227 (306)
T ss_dssp TTCHHHHHHHHHHHHHC--TT-CHHHHHHHH----HHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-----CHHHHHHHH
T ss_pred cChHHHHHHHHHHHHhC--CC-CHHHHHHHH----HHHHhccccchhhhHHHHHHHHHHHHHhCCC-----CccHHHHHH
Confidence 33 6666676665431 22 123443221 12233344 78899999988877654 677776666
Q ss_pred HHHHHccCCCcccccccccCCHHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHHhCChhhhhc
Q 005912 300 ERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQG---LPTDGTRNVLYQRVQKARRINRSRG 360 (670)
Q Consensus 300 ~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~G---ip~d~t~~~Ll~a~~~aG~~~eA~~ 360 (670)
-.+.+.++ . ...+..+.......+ +.....+..+...+++.|+.++|..
T Consensus 228 ~ll~~~~~--~----------~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 228 GIHERFDR--S----------ITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHTTC--C----------GGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhcCC--C----------hHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 66666544 1 222334555544433 3455778888899998888887763
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=90.42 E-value=3 Score=38.79 Aligned_cols=99 Identities=10% Similarity=0.008 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC-------------HHHHHHHHHHHHHcCCcccHHHHHHHHHHhH
Q 005912 31 FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD-------------TETYNCVIQAYTRAESYDRVQDVAELLGMMV 97 (670)
Q Consensus 31 ~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd-------------~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~ 97 (670)
..+..+=..+.+.|++++|...|++... +.|+ ...|+.+=.++.+.| +.++|+..|++-.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~----l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lg---r~~eAl~~~~kAL 84 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAME----ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLR---SFDEALHSADKAL 84 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH----HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh----hCCCCcchhhhhhccchHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 3445555667788999999999998663 2232 338999999999999 7788888888776
Q ss_pred hc---cCCCCCCH-HHH----HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005912 98 ED---HKRLQPNV-KTY----ALLVECFTKYCAVTEAIRHFRALQNY 136 (670)
Q Consensus 98 ~~---~~gi~Pd~-~Ty----~~LL~a~ak~g~~d~A~~lf~~M~~~ 136 (670)
+. ...+.|+. ..| ...-.++...|++++|+..|+...+.
T Consensus 85 ~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 85 HYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 51 01237864 567 78888999999999999999988764
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=90.11 E-value=1.8 Score=36.36 Aligned_cols=63 Identities=10% Similarity=0.074 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005912 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQN 135 (670)
Q Consensus 66 d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~ 135 (670)
+...|..+-..|.+.| +.++|+..|.+... +.| +...|..+-.+|...|+.++|...|.....
T Consensus 18 ~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHE---QFDAALPHLRAALD----FDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcc---CHHHHHHHHHHHHH----HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555555666666 55566666655554 122 344555555666666666666666655443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=89.95 E-value=1.4 Score=47.75 Aligned_cols=97 Identities=9% Similarity=0.037 Sum_probs=70.7
Q ss_pred HHHHHHcCCcccHHHHHHHHHHhHhccCC-CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCC
Q 005912 74 IQAYTRAESYDRVQDVAELLGMMVEDHKR-LQPN----VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGN 148 (670)
Q Consensus 74 I~ay~k~g~~~~~~eAl~lf~eM~~~~~g-i~Pd----~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~ 148 (670)
|..+.+.| +.++|+.++++..+.... +-|+ ..+++.|...|...|++++|+.++.+...-.. .+. -..
T Consensus 294 ie~~~~~g---~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~--~~l--g~~ 366 (429)
T 3qwp_A 294 IEELKAHW---KWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYR--IFF--PGS 366 (429)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--HHS--CSS
T ss_pred HHHHHhhc---cHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHH--HHc--CCC
Confidence 45566778 678999999888753222 2332 45789999999999999999999998774210 000 112
Q ss_pred Cch---HHHHHHHHHHHcCCHHHHHHHHHHHh
Q 005912 149 FGD---PLSLYLRALCREGRIIELLEALEAMA 177 (670)
Q Consensus 149 ~pd---tyn~LI~ay~k~G~~eeA~~vf~~M~ 177 (670)
.|+ +|+.|-..|...|++++|..++++..
T Consensus 367 Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 367 HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 233 89999999999999999999998653
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=89.91 E-value=2.8 Score=32.77 Aligned_cols=65 Identities=17% Similarity=0.200 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005912 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNY 136 (670)
Q Consensus 66 d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~ 136 (670)
+...|..+-..|.+.| +.++|+..|.+... .. ..+..++..+-.+|.+.|++++|...|......
T Consensus 8 ~~~~~~~la~~~~~~~---~~~~A~~~~~~a~~--~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQG---DYDEAIEYYQKALE--LD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH--HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcc---CHHHHHHHHHHHHh--cC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3456777777777888 67788888887765 21 224667777778888888888888888887764
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=89.89 E-value=1.7 Score=47.07 Aligned_cols=91 Identities=8% Similarity=-0.091 Sum_probs=65.9
Q ss_pred CcccHHHHHHHHHHhHhccCC-CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCC-CCch---H
Q 005912 82 SYDRVQDVAELLGMMVEDHKR-LQPN----VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEG-NFGD---P 152 (670)
Q Consensus 82 ~~~~~~eAl~lf~eM~~~~~g-i~Pd----~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g-~~pd---t 152 (670)
++.+.++|+.++.+..+.... +-|+ ..||+.|..+|...|++++|..+++....-... + +| ..|+ +
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~--~---lG~~Hp~~a~~ 384 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSK--H---YPVYSLNVASM 384 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--H---SCSSCHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH--H---cCCCChHHHHH
Confidence 333678888888876542122 3333 468999999999999999999999987742100 0 11 1233 8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh
Q 005912 153 LSLYLRALCREGRIIELLEALEAMA 177 (670)
Q Consensus 153 yn~LI~ay~k~G~~eeA~~vf~~M~ 177 (670)
||.|=..|...|++++|..+|++..
T Consensus 385 l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 385 WLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHH
Confidence 9999999999999999999998653
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=89.79 E-value=1.8 Score=35.83 Aligned_cols=62 Identities=13% Similarity=0.022 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 005912 107 VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMA 177 (670)
Q Consensus 107 ~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~ 177 (670)
...+..+-.+|.+.|++++|...|+...+.... .+.+|..+-.+|.+.|++++|...|+...
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---------~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPD---------YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---------CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445555666666666666666666666553211 11156666666666666666666666544
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=89.61 E-value=1.6 Score=38.71 Aligned_cols=114 Identities=8% Similarity=-0.057 Sum_probs=86.8
Q ss_pred HcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHH--
Q 005912 42 TCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK-- 119 (670)
Q Consensus 42 k~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak-- 119 (670)
..+++++|...|++.. ..| .|+.. |=..|...+ .+++|++.|.+-.+ . -+...+..|-..|..
T Consensus 7 ~~~d~~~A~~~~~~aa--~~g-~~~a~----lg~~y~~g~---~~~~A~~~~~~Aa~--~---g~~~a~~~Lg~~y~~G~ 71 (138)
T 1klx_A 7 VKKDLKKAIQYYVKAC--ELN-EMFGC----LSLVSNSQI---NKQKLFQYLSKACE--L---NSGNGCRFLGDFYENGK 71 (138)
T ss_dssp HHHHHHHHHHHHHHHH--HTT-CTTHH----HHHHTCTTS---CHHHHHHHHHHHHH--T---TCHHHHHHHHHHHHHCS
T ss_pred CccCHHHHHHHHHHHH--cCC-CHhhh----HHHHHHcCC---CHHHHHHHHHHHHc--C---CCHHHHHHHHHHHHcCC
Confidence 3457889999999987 444 44443 333333334 67889999999887 4 366777888888887
Q ss_pred --cCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHH----cCCHHHHHHHHHHHhhCCC
Q 005912 120 --YCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCR----EGRIIELLEALEAMAKDNQ 181 (670)
Q Consensus 120 --~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k----~G~~eeA~~vf~~M~~~gi 181 (670)
.++.++|.+.|....+.+. +..+..|=..|.. .+++++|...|+.-.+.|.
T Consensus 72 g~~~d~~~A~~~~~~Aa~~g~-----------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 72 YVKKDLRKAAQYYSKACGLND-----------QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp SSCCCHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred CCCccHHHHHHHHHHHHcCCC-----------HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 8999999999999887543 2267778888888 8999999999999988874
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=89.23 E-value=2.5 Score=33.12 Aligned_cols=80 Identities=16% Similarity=0.116 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHH
Q 005912 30 TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVK 108 (670)
Q Consensus 30 ~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~ 108 (670)
...+..+-..|.+.|++++|...|++... .. ..+...|..+-..|.+.| +.++|+..|.+..+ +.| +..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~-~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~----~~p~~~~ 78 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALE--LD-PNNAEAWYNLGNAYYKQG---DYDEAIEYYQKALE----LDPNNAE 78 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC-TTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HCTTCHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHh--cC-CCCHHHHHHHHHHHHHHh---hHHHHHHHHHHHHh----cCCCCHH
Confidence 45677777888899999999999998763 11 235778888889999999 78899999998876 234 345
Q ss_pred HHHHHHHHHHH
Q 005912 109 TYALLVECFTK 119 (670)
Q Consensus 109 Ty~~LL~a~ak 119 (670)
++..+-.++.+
T Consensus 79 ~~~~l~~~~~~ 89 (91)
T 1na3_A 79 AKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 55555555443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=88.59 E-value=1.8 Score=46.87 Aligned_cols=89 Identities=8% Similarity=-0.035 Sum_probs=45.1
Q ss_pred HcCChHHHHHHHHHchhC-CCCCCCC----HHHHHHHHHHHHHcCCcccHHHHHHHHHHhH-----hccCCCCCC-HHHH
Q 005912 42 TCGIPEVAFATFENMEYG-EDYMKPD----TETYNCVIQAYTRAESYDRVQDVAELLGMMV-----EDHKRLQPN-VKTY 110 (670)
Q Consensus 42 k~G~~e~A~~lf~~M~~~-~~gi~Pd----~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~-----~~~~gi~Pd-~~Ty 110 (670)
+.|++++|..++++.... ..-+.|+ ..+++.|...|...| +.++|+.++.+.. .. ..-.|+ ..+|
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g---~~~eA~~~~~~~L~i~~~~l-g~~Hp~~a~~l 374 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLG---LLEEALFYGTRTMEPYRIFF-PGSHPVRGVQV 374 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHHS-CSSCHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHhHHHHc-CCCChHHHHHH
Confidence 345555555555554421 0111111 345666666666666 3444444444321 11 233343 4677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 005912 111 ALLVECFTKYCAVTEAIRHFRALQ 134 (670)
Q Consensus 111 ~~LL~a~ak~g~~d~A~~lf~~M~ 134 (670)
+.|-..|...|++++|+.++.+..
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Confidence 777777777777777766666554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.16 E-value=8.6 Score=36.31 Aligned_cols=102 Identities=12% Similarity=0.030 Sum_probs=65.8
Q ss_pred HHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHH
Q 005912 39 CQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFT 118 (670)
Q Consensus 39 ~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~a 118 (670)
.-..+|+++.|.++-+.+. +...|..|=....+.| +++-|.+.|..... |..|.--|.
T Consensus 14 LAL~lg~l~~A~e~a~~l~--------~~~~Wk~Lg~~AL~~g---n~~lAe~cy~~~~D-----------~~~L~~Ly~ 71 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKLN--------DSITWERLIQEALAQG---NASLAEMIYQTQHS-----------FDKLSFLYL 71 (177)
T ss_dssp HHHHTTCHHHHHHHHHHHC--------CHHHHHHHHHHHHHTT---CHHHHHHHHHHTTC-----------HHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHhC--------CHHHHHHHHHHHHHcC---ChHHHHHHHHHhCC-----------HHHHHHHHH
Confidence 3445777777777766654 5667777777777777 66677777776643 444555555
Q ss_pred HcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005912 119 KYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM 176 (670)
Q Consensus 119 k~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M 176 (670)
-.|+.+.-..+-+.....+ -+|.-...|.-.|+++++.++|.+.
T Consensus 72 ~tg~~e~L~kla~iA~~~g--------------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 72 VTGDVNKLSKMQNIAQTRE--------------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHTCHHHHHHHHHHHHHTT--------------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHHCc--------------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 5666666555544433332 3677777777778888888777543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=88.08 E-value=6.3 Score=43.18 Aligned_cols=45 Identities=13% Similarity=-0.130 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHch
Q 005912 12 SNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 57 (670)
Q Consensus 12 ~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~ 57 (670)
..+..+|++.... +..+...|-..+..+.+.|+++.|+.+|++..
T Consensus 196 ~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi 240 (493)
T 2uy1_A 196 SRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGI 240 (493)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4567788887764 34457778888888889999999999999877
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=87.21 E-value=13 Score=42.42 Aligned_cols=46 Identities=13% Similarity=-0.117 Sum_probs=26.6
Q ss_pred HHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005912 117 FTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM 176 (670)
Q Consensus 117 ~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M 176 (670)
+...|+++.|.++.+.+.. +..|..|-..+.+.|+++.|.+.|..+
T Consensus 662 ~l~~~~~~~A~~~~~~~~~--------------~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDESA--------------EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTCHHHHHHHHTTCCC--------------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhhCc--------------HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3455666666666443321 115666666666666666666666655
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=87.08 E-value=2.7 Score=34.62 Aligned_cols=63 Identities=21% Similarity=0.240 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005912 66 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQN 135 (670)
Q Consensus 66 d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~ 135 (670)
+...|..+-..|.+.| +.++|+..|.+..+. .| +...|..+-.+|.+.|++++|.+.|+...+
T Consensus 6 ~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHD---NASRALALFEELVET----DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHH----STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5677888888999999 788999999988762 34 456788888999999999999998887665
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=86.50 E-value=1.5 Score=47.52 Aligned_cols=27 Identities=4% Similarity=0.000 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005912 108 KTYALLVECFTKYCAVTEAIRHFRALQ 134 (670)
Q Consensus 108 ~Ty~~LL~a~ak~g~~d~A~~lf~~M~ 134 (670)
.+|+.|-..|...|++++|+.++.+..
T Consensus 383 ~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 383 SMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 555555555555555555555555443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=84.32 E-value=43 Score=34.97 Aligned_cols=154 Identities=8% Similarity=0.014 Sum_probs=107.7
Q ss_pred cCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcC-ChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHc-CCcc
Q 005912 8 AGDHSNALEIAYEMEAAGRMA-TTFHFNHLLSCQATCG-IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA-ESYD 84 (670)
Q Consensus 8 ~G~~~~Al~lf~~M~~~Gv~P-d~~tyn~LI~~yak~G-~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~-g~~~ 84 (670)
....++|+++++.+... .| +...||.-=..+...| .++++..+++.+.. .-..+...|+.---.+.+. +.
T Consensus 67 ~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~---~nPKny~aW~hR~wlL~~l~~~-- 139 (349)
T 3q7a_A 67 EEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAV---QNLKSYQVWHHRLLLLDRISPQ-- 139 (349)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH---TTCCCHHHHHHHHHHHHHHCCS--
T ss_pred CCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHhcCC--
Confidence 44557899999998875 34 4455666555666677 59999999999883 2245778888877777665 41
Q ss_pred cHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHccCCCcccccCCCCchHHHHH
Q 005912 85 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVT--------EAIRHFRALQNYEGGTKVLHNEGNFGDPLSLY 156 (670)
Q Consensus 85 ~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d--------~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~L 156 (670)
..++++.++..+.+ .. .-|-..|+.---.+.+.|..+ ++.+.+..+.+..+...- .|+--
T Consensus 140 ~~~~EL~~~~k~L~--~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~S---------AW~~R 207 (349)
T 3q7a_A 140 DPVSEIEYIHGSLL--PD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNS---------AWGWR 207 (349)
T ss_dssp CCHHHHHHHHHHTS--SC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHH---------HHHHH
T ss_pred ChHHHHHHHHHHHH--hC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHH---------HHHHH
Confidence 35789999999976 22 336778877666666666555 888888888875433221 67776
Q ss_pred HHHHHHcCC-------HHHHHHHHHHHhhCC
Q 005912 157 LRALCREGR-------IIELLEALEAMAKDN 180 (670)
Q Consensus 157 I~ay~k~G~-------~eeA~~vf~~M~~~g 180 (670)
--.+.+.++ ++++++.++......
T Consensus 208 ~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~ 238 (349)
T 3q7a_A 208 WYLRVSRPGAETSSRSLQDELIYILKSIHLI 238 (349)
T ss_dssp HHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHHHhC
Confidence 666666665 688888888887765
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=81.03 E-value=57 Score=34.03 Aligned_cols=166 Identities=7% Similarity=0.016 Sum_probs=107.7
Q ss_pred hcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-C-ChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCc
Q 005912 7 KAG-DHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC-G-IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESY 83 (670)
Q Consensus 7 k~G-~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~-G-~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~ 83 (670)
..| .+++++.+++.+.... .-+...||----.+.+. + +++++..+++.+. .. -..|...|+----.+.+.|.+
T Consensus 100 ~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L--~~-dpkNy~AW~~R~wvl~~l~~~ 175 (349)
T 3q7a_A 100 SLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSL--LP-DPKNYHTWAYLHWLYSHFSTL 175 (349)
T ss_dssp HTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHT--SS-CTTCHHHHHHHHHHHHHHHHT
T ss_pred HhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHH--Hh-CCCCHHHHHHHHHHHHHhccc
Confidence 345 5899999999988653 33666776666666665 6 8899999999988 22 245777887655555444421
Q ss_pred c-----cHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHccCCCc----------
Q 005912 84 D-----RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCA-------VTEAIRHFRALQNYEGGTK---------- 141 (670)
Q Consensus 84 ~-----~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~-------~d~A~~lf~~M~~~g~~~~---------- 141 (670)
+ ...++++++.++.+ .. .-|...|+..-..+.+.+. ++++.+.+.......+...
T Consensus 176 ~~~~~~~~~eELe~~~k~I~--~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll 252 (349)
T 3q7a_A 176 GRISEAQWGSELDWCNEMLR--VD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFL 252 (349)
T ss_dssp TCCCHHHHHHHHHHHHHHHH--HC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHH--hC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 1 13488889998887 32 2366777777777777665 5666666554443322110
Q ss_pred -----------------------------------ccccC------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 005912 142 -----------------------------------VLHNE------GNFGDPLSLYLRALCREGRIIELLEALEAMAKD 179 (670)
Q Consensus 142 -----------------------------------v~~~~------g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~ 179 (670)
++... -.++.....|.+.|...|+.++|.++++.+.++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 253 KHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 00000 122227778888999999999999999988754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 670 | ||||
| d1zrja1 | 37 | a.140.2.1 (A:1-37) Heterogeneous nuclear ribonucle | 5e-07 | |
| d1h1js_ | 44 | a.140.2.1 (S:) S/mar DNA-binding protein Tho1 {Bak | 1e-05 | |
| d1jeqa1 | 51 | a.140.2.1 (A:559-609) DNA binding C-terminal domai | 3e-04 | |
| d2ez9a1 | 183 | c.31.1.3 (A:183-365) Pyruvate oxidase {Lactobacill | 0.004 |
| >d1zrja1 a.140.2.1 (A:1-37) Heterogeneous nuclear ribonucleoprotein U-like protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 37 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: LEM/SAP HeH motif superfamily: SAP domain family: SAP domain domain: Heterogeneous nuclear ribonucleoprotein U-like protein 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.1 bits (105), Expect = 5e-07
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 320 SKMVVSELKEELDAQGLPTDGTRNVLYQRVQKA 352
++ V+EL+EEL +GL T G + L +R+Q A
Sbjct: 4 RRLKVNELREELQRRGLDTRGLKAELAERLQAA 36
|
| >d1h1js_ a.140.2.1 (S:) S/mar DNA-binding protein Tho1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 44 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: LEM/SAP HeH motif superfamily: SAP domain family: SAP domain domain: S/mar DNA-binding protein Tho1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.4 bits (95), Expect = 1e-05
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 320 SKMVVSELKEELDAQGLPTDGTRNVLYQRVQKA 352
S + V +LK+ L + L G +N L QR+ K
Sbjct: 6 SSLTVVQLKDLLTKRNLSVGGLKNELVQRLIKD 38
|
| >d1jeqa1 a.140.2.1 (A:559-609) DNA binding C-terminal domain of ku70 {Human (Homo sapiens) [TaxId: 9606]} Length = 51 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: LEM/SAP HeH motif superfamily: SAP domain family: SAP domain domain: DNA binding C-terminal domain of ku70 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.6 bits (85), Expect = 3e-04
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 320 SKMVVSELKEELDAQGLPTDGTRNVLYQRVQK 351
K V LKE A GL + + L + + K
Sbjct: 16 GKFTVPMLKEACRAYGLKSGLKKQELLEALTK 47
|
| >d2ez9a1 c.31.1.3 (A:183-365) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Pyruvate oxidase species: Lactobacillus plantarum [TaxId: 1590]
Score = 36.6 bits (83), Expect = 0.004
Identities = 17/142 (11%), Positives = 44/142 (30%), Gaps = 1/142 (0%)
Query: 450 EPESQDVDRVKEKLVEAKKPLQMIGVQLLKDSDQTTTTSKRSMKRSSRMVEDDDDEDWFP 509
EP+ Q V R+ + L+ A++PL G+ K + SK
Sbjct: 14 EPDVQAVTRLTQTLLAAERPLIYYGIGARKAGKELEQLSKTLKIPLMSTYPAKGIVADRY 73
Query: 510 EDPFEAFKEMRKRKVFDVSDMYTIADAWGWTWEREITNRPPQKWSQEWEVELAIQIMLKV 569
+ + ++ + + G + ++ + ++++ + K
Sbjct: 74 PAYLGSANRVAQKPANEALAQADVVLFVGNNYPFAEVSKAFKNTRYFLQIDIDPAKLGKR 133
Query: 570 IELGGTPTIGDCAVIIRAAIRA 591
+ + D + A +
Sbjct: 134 HKT-DIAVLADAQKTLAAILAQ 154
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 670 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.06 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 98.83 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.39 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.2 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.13 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.06 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.01 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 97.49 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 97.28 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 96.96 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 96.91 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 96.82 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 96.72 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 96.49 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 96.36 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 96.29 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 96.2 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 96.14 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 96.12 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 96.08 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 96.03 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 96.0 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 95.46 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 94.85 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 94.6 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 94.57 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 94.37 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 94.19 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 94.19 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 93.64 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 93.56 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 93.18 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 93.1 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 92.77 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 92.37 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 92.06 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 91.72 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 91.43 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 91.41 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 90.78 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 89.64 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 89.19 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 89.19 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 88.54 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 86.7 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 85.69 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=3.8e-07 Score=92.06 Aligned_cols=305 Identities=14% Similarity=0.055 Sum_probs=187.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAE 81 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~g 81 (670)
..+-+.|++++|+++|+++.+.. +-+...+..+-..|.+.|++++|..+|++... +.| +..+|..+...|.+.|
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~----~~p~~~~a~~~l~~~~~~~g 81 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK----QNPLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHhhhhc
Confidence 34678899999999999988652 23578889999999999999999999999763 133 5688999999999999
Q ss_pred CcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHH----------------------------------HcCCHHHHH
Q 005912 82 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFT----------------------------------KYCAVTEAI 127 (670)
Q Consensus 82 ~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~a----------------------------------k~g~~d~A~ 127 (670)
+.++|+..|..... ... .+...+........ ..+....+.
T Consensus 82 ---~~~~A~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (388)
T d1w3ba_ 82 ---QLQEAIEHYRHALR--LKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAK 155 (388)
T ss_dssp ---CHHHHHHHHHHHHH--HCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHH
T ss_pred ---cccccccccccccc--ccc-ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhH
Confidence 78899988888766 221 11222211111111 222222333
Q ss_pred HHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHH--------
Q 005912 128 RHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVS-------- 199 (670)
Q Consensus 128 ~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~-------- 199 (670)
..+........ ..+.++..+...+...|..++|...++...+.. |+... .+..+..
T Consensus 156 ~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----p~~~~---~~~~l~~~~~~~~~~ 219 (388)
T d1w3ba_ 156 ACYLKAIETQP---------NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD----PNFLD---AYINLGNVLKEARIF 219 (388)
T ss_dssp HHHHHHHHHCT---------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC----TTCHH---HHHHHHHHHHTTTCT
T ss_pred HHHHHhhccCc---------chhHHHHhhcccccccCcHHHHHHHHHHHHHhC----cccHH---HHHHHhhhhhccccH
Confidence 33322222110 111155566666666777777777666655533 22111 1222211
Q ss_pred -HHHHHHHHHHHcCCC-HHH---HHHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHH
Q 005912 200 -SWIEPLQEEAELGYE-IDY---IARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRK 274 (670)
Q Consensus 200 -a~~~ll~~m~~~G~~-pd~---i~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~ 274 (670)
.+...+......... +.. +...+...|..++|..+|+...+. .|+. ..+|.. +...|...|+.++|+.
T Consensus 220 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~-~~~~~~----l~~~~~~~~~~~~A~~ 292 (388)
T d1w3ba_ 220 DRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHF-PDAYCN----LANALKEKGSVAEAED 292 (388)
T ss_dssp THHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSC-HHHHHH----HHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCC-HHHHHH----HHHHHHHcCCHHHHHH
Confidence 122233333332222 221 223456678899999998887553 2443 123332 3477888999999999
Q ss_pred HHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHhC
Q 005912 275 LLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTD-GTRNVLYQRVQKAR 353 (670)
Q Consensus 275 Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~Gip~d-~t~~~Ll~a~~~aG 353 (670)
.|.......-. +...+..+...+. ..|+.++|..+|++..+.. |+. .++..+-..+...|
T Consensus 293 ~~~~~~~~~~~-----~~~~~~~l~~~~~-------------~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g 353 (388)
T d1w3ba_ 293 CYNTALRLCPT-----HADSLNNLANIKR-------------EQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQG 353 (388)
T ss_dssp HHHHHHHHCTT-----CHHHHHHHHHHHH-------------TTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHhhhccCCc-----cchhhhHHHHHHH-------------HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 99887654322 3333333333333 4567999999999876643 544 67888888999999
Q ss_pred Chhhhhc
Q 005912 354 RINRSRG 360 (670)
Q Consensus 354 ~~~eA~~ 360 (670)
++++|..
T Consensus 354 ~~~~A~~ 360 (388)
T d1w3ba_ 354 KLQEALM 360 (388)
T ss_dssp CCHHHHH
T ss_pred CHHHHHH
Confidence 9998864
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=3.1e-06 Score=85.06 Aligned_cols=306 Identities=12% Similarity=0.027 Sum_probs=175.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 3 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
..|.+.|++++|+.+|++..+.. +-+..+|..+-..|.+.|++++|...|..... .. ..+...+......+...+.
T Consensus 41 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~ 116 (388)
T d1w3ba_ 41 SIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALR--LK-PDFIDGYINLAAALVAAGD 116 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HC-TTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccccccccccccc--cc-ccccccccccccccccccc
Confidence 46778999999999999987652 23577899999999999999999999988763 11 1122222222211111111
Q ss_pred cc-------------------------------cHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 005912 83 YD-------------------------------RVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHF 130 (670)
Q Consensus 83 ~~-------------------------------~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf 130 (670)
.. ....+...+..... ..| +..++..+...+...|..+.|...+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 192 (388)
T d1w3ba_ 117 MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE----TQPNFAVAWSNLGCVFNAQGEIWLAIHHF 192 (388)
T ss_dssp SSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccchhhhhHHHHHHhhc----cCcchhHHHHhhcccccccCcHHHHHHHH
Confidence 00 22233334443333 123 3455666666667777777777777
Q ss_pred HHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchH-HHHhHH--HHHHHHHHHHHHH
Q 005912 131 RALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAM-ILSRKY--RTLVSSWIEPLQE 207 (670)
Q Consensus 131 ~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~-i~~~ty--~~ll~a~~~ll~~ 207 (670)
......... .+++|..+-..|...|++++|...|......+.. .+... ..+..+ .+....+...+..
T Consensus 193 ~~al~~~p~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 262 (388)
T d1w3ba_ 193 EKAVTLDPN---------FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRR 262 (388)
T ss_dssp HHHHHHCTT---------CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhCcc---------cHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666553211 1125666667777777777777777766554421 11110 000000 0112233344444
Q ss_pred HHHcCC-CHHH---HHHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005912 208 EAELGY-EIDY---IARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEG 283 (670)
Q Consensus 208 m~~~G~-~pd~---i~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~g 283 (670)
..+..- .++. +...+...|...+|...++..... .|+. ...+. .+...|.+.|+.++|+.+|++..+..
T Consensus 263 al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~-~~~~~----~l~~~~~~~~~~~~A~~~~~~al~~~ 335 (388)
T d1w3ba_ 263 AIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTH-ADSLN----NLANIKREQGNIEEAVRLYRKALEVF 335 (388)
T ss_dssp HHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTC-HHHHH----HHHHHHHTTTCHHHHHHHHHHHTTSC
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--CCcc-chhhh----HHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 333221 1222 223456678889999998877553 1332 13333 24478899999999999999876532
Q ss_pred CCccCCCC-HHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHhC
Q 005912 284 PAVLGDVS-ESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTD-GTRNVLYQRVQKAR 353 (670)
Q Consensus 284 v~~~g~~~-~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~Gip~d-~t~~~Ll~a~~~aG 353 (670)
|+ ...+..+-..+. ..|++++|...|++..+.. |+. ..|..|-..+.+.|
T Consensus 336 ------p~~~~~~~~la~~~~-------------~~g~~~~A~~~~~~al~l~-P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 336 ------PEFAAAHSNLASVLQ-------------QQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp ------TTCHHHHHHHHHHHH-------------TTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTC
T ss_pred ------CCCHHHHHHHHHHHH-------------HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 32 222332222333 4567999999999876632 544 67777777776655
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=2.7e-05 Score=77.50 Aligned_cols=224 Identities=13% Similarity=0.035 Sum_probs=159.9
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcCC
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAES 82 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~g~ 82 (670)
.|.+.|++++|+..|++..+.. +-+..+|..|-..|...|++++|...|++... +.| +...|..+...|...|
T Consensus 28 ~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~~~- 101 (323)
T d1fcha_ 28 RRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLE----LKPDNQTALMALAVSFTNES- 101 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTT-
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhc----cccccccccccccccccccc-
Confidence 4678999999999999998752 23578899999999999999999999998763 233 5788999999999999
Q ss_pred cccHHHHHHHHHHhHhccCCCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccC
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQPNV----------------KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNE 146 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~Pd~----------------~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~ 146 (670)
+.++|++.|.+... +.|+. ..+...+..+...+...++...|....+....
T Consensus 102 --~~~~A~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~------- 168 (323)
T d1fcha_ 102 --LQRQACEILRDWLR----YTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPT------- 168 (323)
T ss_dssp --CHHHHHHHHHHHHH----TSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTT-------
T ss_pred --cccccccchhhHHH----hccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhc-------
Confidence 78899999998875 22221 11112233444566778888888877654221
Q ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCC
Q 005912 147 GNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGG 226 (670)
Q Consensus 147 g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g 226 (670)
...+.++..+-..|.+.|++++|...|+...... |+... .+..+.. .+...|
T Consensus 169 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----p~~~~---~~~~lg~---------------------~~~~~g 220 (323)
T d1fcha_ 169 SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR----PNDYL---LWNKLGA---------------------TLANGN 220 (323)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHH---HHHHHHH---------------------HHHHTT
T ss_pred ccccccchhhHHHHHHHHHHhhhhcccccccccc----ccccc---chhhhhh---------------------cccccc
Confidence 1112378888899999999999999999887654 22211 1333322 236678
Q ss_pred cHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005912 227 LTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQN 281 (670)
Q Consensus 227 ~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~ 281 (670)
..++|...|+...+. .|+. ..+|.. +...|.+.|+.++|+..|.+...
T Consensus 221 ~~~~A~~~~~~al~~--~p~~-~~a~~~----lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 221 QSEEAVAAYRRALEL--QPGY-IRSRYN----LGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp CHHHHHHHHHHHHHH--CTTC-HHHHHH----HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHH--hhcc-HHHHHH----HHHHHHHCCCHHHHHHHHHHHHH
Confidence 899999999887653 3443 123433 44788999999999999987664
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=0.00046 Score=68.16 Aligned_cols=258 Identities=14% Similarity=0.050 Sum_probs=163.9
Q ss_pred HHHHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHH
Q 005912 39 CQATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVEC 116 (670)
Q Consensus 39 ~yak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a 116 (670)
.|.+.|++++|...|++..+ ..| +..+|..+-.+|...| +.++|+..|.+..+ +.| +...|..+..+
T Consensus 28 ~~~~~g~~~~A~~~~~~al~----~~P~~~~a~~~lg~~~~~~~---~~~~A~~~~~~al~----~~p~~~~~~~~la~~ 96 (323)
T d1fcha_ 28 RRLQEGDLPNAVLLFEAAVQ----QDPKHMEAWQYLGTTQAENE---QELLAISALRRCLE----LKPDNQTALMALAVS 96 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHH----SCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HCTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHhhhc----ccccccccccccccc
Confidence 47789999999999999873 234 5789999999999999 88999999999876 345 46778888899
Q ss_pred HHHcCCHHHHHHHHHHHHHccCCCcccccCCCCc------hHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHH
Q 005912 117 FTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFG------DPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMIL 190 (670)
Q Consensus 117 ~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~p------dtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~ 190 (670)
|...|++++|.+.+.................... ..+...+..+.+.+...+|...|....+.... ..+..
T Consensus 97 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~-~~~~~-- 173 (323)
T d1fcha_ 97 FTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPT-SIDPD-- 173 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTT-SCCHH--
T ss_pred ccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhc-ccccc--
Confidence 9999999999999999887543211110000000 01222344455666777888888776654311 11211
Q ss_pred HhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHH
Q 005912 191 SRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKK 270 (670)
Q Consensus 191 ~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e 270 (670)
.+..+. ..+...|..++|...|+..... .|+. ..+|.. +...|.+.|+.+
T Consensus 174 --~~~~l~---------------------~~~~~~~~~~~A~~~~~~al~~--~p~~-~~~~~~----lg~~~~~~g~~~ 223 (323)
T d1fcha_ 174 --VQCGLG---------------------VLFNLSGEYDKAVDCFTAALSV--RPND-YLLWNK----LGATLANGNQSE 223 (323)
T ss_dssp --HHHHHH---------------------HHHHHTTCHHHHHHHHHHHHHH--CTTC-HHHHHH----HHHHHHHTTCHH
T ss_pred --cchhhH---------------------HHHHHHHHHhhhhccccccccc--cccc-ccchhh----hhhcccccccch
Confidence 122222 2235667899999999887543 2442 233433 347889999999
Q ss_pred HHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHHhC-----------CCCCH
Q 005912 271 YHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQ-----------GLPTD 339 (670)
Q Consensus 271 ~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~~~-----------Gip~d 339 (670)
+|.+.|+......-. +...+..+-..+. ..|..++|...|++-.+. +....
T Consensus 224 ~A~~~~~~al~~~p~-----~~~a~~~lg~~~~-------------~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 285 (323)
T d1fcha_ 224 EAVAAYRRALELQPG-----YIRSRYNLGISCI-------------NLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 285 (323)
T ss_dssp HHHHHHHHHHHHCTT-----CHHHHHHHHHHHH-------------HHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred hHHHHHHHHHHHhhc-----cHHHHHHHHHHHH-------------HCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHH
Confidence 999999988764311 2333333333333 345688999998876541 11122
Q ss_pred HHHHHHHHHHHHhCChhhh
Q 005912 340 GTRNVLYQRVQKARRINRS 358 (670)
Q Consensus 340 ~t~~~Ll~a~~~aG~~~eA 358 (670)
..|..+=.++...|+.+.+
T Consensus 286 ~~~~~l~~al~~~~~~d~~ 304 (323)
T d1fcha_ 286 NIWSTLRLALSMLGQSDAY 304 (323)
T ss_dssp HHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHHHcCCHHHH
Confidence 3455555566666666543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.13 E-value=0.00012 Score=73.09 Aligned_cols=155 Identities=10% Similarity=-0.029 Sum_probs=118.7
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHH
Q 005912 9 GDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQD 88 (670)
Q Consensus 9 G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~e 88 (670)
+..++|..+|+........-+...|......+-+.|+++.|..+|+++. ..........|...+..+.+.| ..+.
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l--~~~~~~~~~~w~~~~~~~~~~~---~~~~ 152 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL--AIEDIDPTLVYIQYMKFARRAE---GIKS 152 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--TSSSSCTHHHHHHHHHHHHHHH---CHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHH--HHhcCChHHHHHHHHHHHHHcC---ChHH
Confidence 4467888899888765455567788889999999999999999999987 3332233567999999999999 7889
Q ss_pred HHHHHHHhHhccCCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHH
Q 005912 89 VAELLGMMVEDHKRLQPNVKTYALLVE-CFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRII 167 (670)
Q Consensus 89 Al~lf~eM~~~~~gi~Pd~~Ty~~LL~-a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~e 167 (670)
|.++|..... ... .+...|..... -+...|+.+.|..+|+.+..... ..+..|..+++.+.+.|+++
T Consensus 153 ar~i~~~al~--~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p---------~~~~~w~~y~~~~~~~g~~~ 220 (308)
T d2onda1 153 GRMIFKKARE--DAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG---------DIPEYVLAYIDYLSHLNEDN 220 (308)
T ss_dssp HHHHHHHHHT--STT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHH--hCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhh---------hhHHHHHHHHHHHHHcCChH
Confidence 9999999886 322 23333433322 34456899999999999987522 12338999999999999999
Q ss_pred HHHHHHHHHhhCC
Q 005912 168 ELLEALEAMAKDN 180 (670)
Q Consensus 168 eA~~vf~~M~~~g 180 (670)
.|..+|+.-.+..
T Consensus 221 ~aR~~fe~ai~~~ 233 (308)
T d2onda1 221 NTRVLFERVLTSG 233 (308)
T ss_dssp HHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhC
Confidence 9999999987765
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.06 E-value=0.0039 Score=60.48 Aligned_cols=311 Identities=11% Similarity=0.006 Sum_probs=183.3
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHchhC--CCCC-CCCHHHHHHHH
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMAT------TFHFNHLLSCQATCGIPEVAFATFENMEYG--EDYM-KPDTETYNCVI 74 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd------~~tyn~LI~~yak~G~~e~A~~lf~~M~~~--~~gi-~Pd~~tyn~LI 74 (670)
.+...|++++|+.+|++-.+. .|+ ...++.+-..|...|++++|...|++.... ..+- .....++..+.
T Consensus 21 ~~~~~g~~~~A~~~~~~aL~~--~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 21 VAINDGNPDEAERLAKLALEE--LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHT--CCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhh--CcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 467889999999999987764 232 346677778899999999999999987520 1111 11235567777
Q ss_pred HHHHHcCCcccHHHHHHHHHHhHhcc--CC--CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCC
Q 005912 75 QAYTRAESYDRVQDVAELLGMMVEDH--KR--LQPN-VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNF 149 (670)
Q Consensus 75 ~ay~k~g~~~~~~eAl~lf~eM~~~~--~g--i~Pd-~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~ 149 (670)
..|...| +...+...+.+..... .. ..+. ...+..+-..+...|+++.+...+.............. .
T Consensus 99 ~~~~~~~---~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~ 171 (366)
T d1hz4a_ 99 EILFAQG---FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ----Q 171 (366)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG----G
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhh----H
Confidence 7888889 6777777776543210 11 1222 23556677888899999999999988876432211110 0
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHH
Q 005912 150 GDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTG 229 (670)
Q Consensus 150 pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~ 229 (670)
..++..+...|...|...++...+....................+. ....++...|..+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~ 230 (366)
T d1hz4a_ 172 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK---------------------VRVIYWQMTGDKA 230 (366)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHH---------------------HHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHH---------------------HHHHHHHhcccHH
Confidence 1156667777889999999998887654321111111110000011 1123346678899
Q ss_pred HHHHHHHHhccCCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCC
Q 005912 230 ERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGP 309 (670)
Q Consensus 230 ~a~~lf~~m~~~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p 309 (670)
++..++..........+. ...... ..+...|...|+.+.|..+++......-.. ........+...+...-
T Consensus 231 ~a~~~~~~~~~~~~~~~~--~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~--- 301 (366)
T d1hz4a_ 231 AAANWLRHTAKPEFANNH--FLQGQW-RNIARAQILLGEFEPAEIVLEELNENARSL---RLMSDLNRNLLLLNQLY--- 301 (366)
T ss_dssp HHHHHHHHSCCCCCTTCG--GGHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhccccch--HHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHhhc---ccChHHHHHHHHHHHHH---
Confidence 999988877553222221 222211 234578899999999999998876431110 01111111111111110
Q ss_pred cccccccccCCHHHHHHHHHHHH----hCCCCC-----HHHHHHHHHHHHHhCChhhhh
Q 005912 310 EQHVLKPKAASKMVVSELKEELD----AQGLPT-----DGTRNVLYQRVQKARRINRSR 359 (670)
Q Consensus 310 ~~~~L~~~~g~~~~A~~l~~~M~----~~Gip~-----d~t~~~Ll~a~~~aG~~~eA~ 359 (670)
...|+.++|.+.+++-. ..|... ......++..+...+++.++.
T Consensus 302 ------~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e 354 (366)
T d1hz4a_ 302 ------WQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELE 354 (366)
T ss_dssp ------HHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHH
T ss_pred ------HHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHH
Confidence 25677888888887643 334421 134455666666677666553
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.01 E-value=0.00054 Score=68.25 Aligned_cols=223 Identities=8% Similarity=-0.044 Sum_probs=144.6
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--------------HcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHH
Q 005912 11 HSNALEIAYEMEAAGRMATTFHFNHLLSCQA--------------TCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQA 76 (670)
Q Consensus 11 ~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~ya--------------k~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~a 76 (670)
.+++..+|++.... +.-+...|---+..+- ..+..++|..+|++.. ......+...|...+..
T Consensus 32 ~~Rv~~vyerAl~~-~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral--~~~~p~~~~l~~~ya~~ 108 (308)
T d2onda1 32 TKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAI--STLLKKNMLLYFAYADY 108 (308)
T ss_dssp HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHH--TTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHH--HHcCCCCHHHHHHHHHH
Confidence 45567777776653 2223444433333222 2334678889998877 44445567788888888
Q ss_pred HHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHH
Q 005912 77 YTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLY 156 (670)
Q Consensus 77 y~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~L 156 (670)
+-+.| ..+.|..+|+.+.. ........+|...+..+.+.|.++.|+++|....+....... .|-..
T Consensus 109 ~~~~~---~~~~a~~i~~~~l~--~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~---------~~~~~ 174 (308)
T d2onda1 109 EESRM---KYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH---------VYVTA 174 (308)
T ss_dssp HHHTT---CHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTH---------HHHHH
T ss_pred HHhcc---cHHHHHHHHHHHHH--HhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH---------HHHHH
Confidence 88888 78899999999876 333333557888899999999999999999988765332111 33333
Q ss_pred HHH-HHHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHH
Q 005912 157 LRA-LCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWV 235 (670)
Q Consensus 157 I~a-y~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf 235 (670)
... +...|+.+.|..+|+.+.+.. |+... .+...+ .+....|..+.|+.+|
T Consensus 175 a~~e~~~~~~~~~a~~i~e~~l~~~----p~~~~---~w~~y~---------------------~~~~~~g~~~~aR~~f 226 (308)
T d2onda1 175 ALMEYYCSKDKSVAFKIFELGLKKY----GDIPE---YVLAYI---------------------DYLSHLNEDNNTRVLF 226 (308)
T ss_dssp HHHHHHTSCCHHHHHHHHHHHHHHH----TTCHH---HHHHHH---------------------HHHHTTCCHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhh----hhhHH---HHHHHH---------------------HHHHHcCChHHHHHHH
Confidence 332 344688999999999887753 22110 122222 2336678999999999
Q ss_pred HHhccC-CCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005912 236 PRRGKT-PLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNE 282 (670)
Q Consensus 236 ~~m~~~-gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~ 282 (670)
+..... +..|......|...+ .--.+.|+++.+.++++.+.+.
T Consensus 227 e~ai~~~~~~~~~~~~iw~~~~----~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 227 ERVLTSGSLPPEKSGEIWARFL----AFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHSSSSCGGGCHHHHHHHH----HHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHH----HHHHHcCCHHHHHHHHHHHHHH
Confidence 997553 344543233454443 4446779999999999988654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=97.49 E-value=0.027 Score=54.12 Aligned_cols=275 Identities=11% Similarity=-0.021 Sum_probs=159.5
Q ss_pred HHHHHHcCChHHHHHHHHHchhCCCCCCCC------HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhcc--CCCCC-CH
Q 005912 37 LSCQATCGIPEVAFATFENMEYGEDYMKPD------TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDH--KRLQP-NV 107 (670)
Q Consensus 37 I~~yak~G~~e~A~~lf~~M~~~~~gi~Pd------~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~--~gi~P-d~ 107 (670)
-..+...|++++|..+|++... . .|+ ...++.+-..|...| +.++|+..|.+..... .+-.+ ..
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~-~---~~~~~~~~~~~a~~~lg~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~ 91 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALE-E---LPPGWFYSRIVATSVLGEVLHCKG---ELTRSLALMQQTEQMARQHDVWHYAL 91 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-T---CCTTCHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHh-h---CcCCCcHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHhhcchHHHH
Confidence 3456789999999999998653 1 232 356778888899999 7889999998765410 11111 13
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCch---HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC
Q 005912 108 KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGD---PLSLYLRALCREGRIIELLEALEAMAKDNQPVP 184 (670)
Q Consensus 108 ~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pd---tyn~LI~ay~k~G~~eeA~~vf~~M~~~gi~i~ 184 (670)
.++..+...+...|++..+...+........... ....+. .+..+-..|...|+++.+...+...........
T Consensus 92 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~----~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~ 167 (366)
T d1hz4a_ 92 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQH----LEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ 167 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----CTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcc----cchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhh
Confidence 4566677888899999999999987664211000 000011 556677788999999999999988766543212
Q ss_pred CchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhcc--CCCCCCcccchhhhhHHHHHHH
Q 005912 185 PRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGK--TPLDPDAVGFIYSNPMETSFKQ 262 (670)
Q Consensus 185 p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~--~gi~Pd~d~~ty~~LIe~lv~~ 262 (670)
..... ..+...... +...+....+...+..... ....... .....+.......
T Consensus 168 ~~~~~--~~~~~~~~~---------------------~~~~~~~~~a~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~ 222 (366)
T d1hz4a_ 168 PQQQL--QCLAMLIQC---------------------SLARGDLDNARSQLNRLENLLGNGKYHS--DWISNANKVRVIY 222 (366)
T ss_dssp GGGGH--HHHHHHHHH---------------------HHHHTCHHHHHHHHHHHHHHHTTSCCCH--HHHHHHHHHHHHH
T ss_pred hhhHH--HHHHHHHHH---------------------HHhhhhHHHHHHHHHHHHHHHHHhcccC--chHHHHHHHHHHH
Confidence 21111 111111111 1222334444444333221 0011111 1112222234467
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCccCCCCHHHHHHHHHHHHHccCCCcccccccccCCHHHHHHHHHHHH----hCCCCC
Q 005912 263 RCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELD----AQGLPT 338 (670)
Q Consensus 263 ~~~~G~~e~A~~Lf~~M~~~gv~~~g~~~~~~~~~~l~~l~k~~~~p~~~~L~~~~g~~~~A~~l~~~M~----~~Gip~ 338 (670)
+...|+.+.|...+.......... .......+..+-..+. ..|.+++|...++... ..+.++
T Consensus 223 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~-------------~~g~~~~A~~~~~~al~~~~~~~~~~ 288 (366)
T d1hz4a_ 223 WQMTGDKAAAANWLRHTAKPEFAN-NHFLQGQWRNIARAQI-------------LLGEFEPAEIVLEELNENARSLRLMS 288 (366)
T ss_dssp HHHTTCHHHHHHHHHHSCCCCCTT-CGGGHHHHHHHHHHHH-------------HTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhcccHHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHH-------------HcCCHHHHHHHHHHHHHHHhhcccCh
Confidence 788999999999987754432220 0011112222222222 3466888888888764 345633
Q ss_pred H--HHHHHHHHHHHHhCChhhhhcC
Q 005912 339 D--GTRNVLYQRVQKARRINRSRGR 361 (670)
Q Consensus 339 d--~t~~~Ll~a~~~aG~~~eA~~~ 361 (670)
. .++..+-..+...|+.++|...
T Consensus 289 ~~~~~~~~la~~~~~~g~~~~A~~~ 313 (366)
T d1hz4a_ 289 DLNRNLLLLNQLYWQAGRKSDAQRV 313 (366)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3 5778888899999999998743
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.28 E-value=0.016 Score=57.49 Aligned_cols=155 Identities=5% Similarity=-0.061 Sum_probs=98.3
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcC-ChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005912 5 DCKAGDHSNALEIAYEMEAAGRMA-TTFHFNHLLSCQATCG-IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 82 (670)
Q Consensus 5 y~k~G~~~~Al~lf~~M~~~Gv~P-d~~tyn~LI~~yak~G-~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~ 82 (670)
+.+.+.+++|+.++++..+. .| +...|+..-..+...| ++++|...|+.... . -.-+..+|+.+-..+.+.|
T Consensus 53 ~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~--~-~p~~~~a~~~~~~~~~~l~- 126 (315)
T d2h6fa1 53 LQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE--E-QPKNYQVWHHRRVLVEWLR- 126 (315)
T ss_dssp HHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHHT-
T ss_pred HHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHH--H-HHhhhhHHHHHhHHHHhhc-
Confidence 45667777888887777764 34 3445566666666655 47777777777652 1 1234677777777777777
Q ss_pred cccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHH
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALC 161 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~ 161 (670)
+.++|+.+|..+.+ +.| +...|..+...+.+.|++++|...|..+.+..+.... .|+.+-..+.
T Consensus 127 --~~~eAl~~~~kal~----~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~---------a~~~r~~~l~ 191 (315)
T d2h6fa1 127 --DPSQELEFIADILN----QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNS---------VWNQRYFVIS 191 (315)
T ss_dssp --CCTTHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH---------HHHHHHHHHH
T ss_pred --cHHHHHHHHhhhhh----hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHH---------HHHHHHHHHH
Confidence 55677777777766 233 4677777777777778888888877777764322111 4555544555
Q ss_pred HcCC------HHHHHHHHHHHhhCC
Q 005912 162 REGR------IIELLEALEAMAKDN 180 (670)
Q Consensus 162 k~G~------~eeA~~vf~~M~~~g 180 (670)
+.+. +++|...+....+.+
T Consensus 192 ~~~~~~~~~~~~~ai~~~~~al~~~ 216 (315)
T d2h6fa1 192 NTTGYNDRAVLEREVQYTLEMIKLV 216 (315)
T ss_dssp HTTCSCSHHHHHHHHHHHHHHHHHS
T ss_pred HccccchhhhhHHhHHHHHHHHHhC
Confidence 5444 456666666655543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.96 E-value=0.011 Score=54.37 Aligned_cols=131 Identities=11% Similarity=0.017 Sum_probs=101.5
Q ss_pred HHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHH
Q 005912 38 SCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVEC 116 (670)
Q Consensus 38 ~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a 116 (670)
..+...|+++.|.+.|.++. .|+..+|..+=.+|...| +.++|++.|.+-.+ +.| +...|..+-.+
T Consensus 13 ~~~~~~~d~~~Al~~~~~i~------~~~~~~~~nlG~~~~~~g---~~~~A~~~~~kAl~----ldp~~~~a~~~~g~~ 79 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAVQ------DPHSRICFNIGCMYTILK---NMTEAEKAFTRSIN----RDKHLAVAYFQRGML 79 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTSS------SCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HCTTCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcC---CchhHHHHHHHHHH----HhhhhhhhHHHHHHH
Confidence 34567899999999999887 788899999999999999 88999999999877 334 47788999999
Q ss_pred HHHcCCHHHHHHHHHHHHHccCCCccccc--CCCC-----chHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 005912 117 FTKYCAVTEAIRHFRALQNYEGGTKVLHN--EGNF-----GDPLSLYLRALCREGRIIELLEALEAMAKDNQ 181 (670)
Q Consensus 117 ~ak~g~~d~A~~lf~~M~~~g~~~~v~~~--~g~~-----pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi 181 (670)
|.+.|+.++|...|+.............. .|.. ..++..+=.+|.+.|++++|.+.|....+...
T Consensus 80 ~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 80 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 99999999999999987754322211110 0111 01566677789999999999999998766543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=96.91 E-value=0.033 Score=52.12 Aligned_cols=151 Identities=11% Similarity=-0.033 Sum_probs=98.9
Q ss_pred CChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCC-CCHHHHHHHHHHHHHcCCcc
Q 005912 9 GDHSNALEIAYEMEAAGRMA---TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK-PDTETYNCVIQAYTRAESYD 84 (670)
Q Consensus 9 G~~~~Al~lf~~M~~~Gv~P---d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~-Pd~~tyn~LI~ay~k~g~~~ 84 (670)
.+.+.++.-+.+....-... ...+|..+=..|.+.|++++|...|++... +. -+..+|+.+=.+|.+.|
T Consensus 13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~----l~p~~~~a~~~lg~~~~~~g--- 85 (259)
T d1xnfa_ 13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA----IRPDMPEVFNYLGIYLTQAG--- 85 (259)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhc----cCCCCHHHHhhhchHHHHHH---
Confidence 34556666677766542211 123455555678888999999999988763 23 35678888888899999
Q ss_pred cHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHc
Q 005912 85 RVQDVAELLGMMVEDHKRLQPN-VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCRE 163 (670)
Q Consensus 85 ~~~eAl~lf~eM~~~~~gi~Pd-~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~ 163 (670)
+.++|+..|.+... +.|+ ..+|..+-.+|...|+.+.|...|....+..... .. ....+.-++.+.
T Consensus 86 ~~~~A~~~~~~al~----~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~--------~~~~~~~~~~~~ 152 (259)
T d1xnfa_ 86 NFDAAYEAFDSVLE----LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND-PF--------RSLWLYLAEQKL 152 (259)
T ss_dssp CHHHHHHHHHHHHH----HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HH--------HHHHHHHHHHHH
T ss_pred HHHHhhhhhhHHHH----HHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccc-HH--------HHHHHHHHHHHh
Confidence 78889999988876 3443 5577778888888999999999998877643221 11 222333444555
Q ss_pred CCHHHHHHHHHHHhhC
Q 005912 164 GRIIELLEALEAMAKD 179 (670)
Q Consensus 164 G~~eeA~~vf~~M~~~ 179 (670)
+..+.+..+.......
T Consensus 153 ~~~~~~~~~~~~~~~~ 168 (259)
T d1xnfa_ 153 DEKQAKEVLKQHFEKS 168 (259)
T ss_dssp CHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHhhcc
Confidence 5555555555555443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=96.82 E-value=0.032 Score=52.25 Aligned_cols=165 Identities=12% Similarity=-0.039 Sum_probs=117.4
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcCC
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAES 82 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~g~ 82 (670)
.|-+.|++++|+..|++..... +-+..+|+.+=.+|.+.|++++|...|++... +.| +..+|..+-..|...|
T Consensus 46 ~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~~~a~~~lg~~~~~~g- 119 (259)
T d1xnfa_ 46 LYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE----LDPTYNYAHLNRGIALYYGG- 119 (259)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCTHHHHHHHHHHHHTT-
T ss_pred HHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHH----HHhhhhhhHHHHHHHHHHHh-
Confidence 5778999999999999988642 23678899999999999999999999999874 233 4567888889999999
Q ss_pred cccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCc---cc-ccCCCC--------
Q 005912 83 YDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTK---VL-HNEGNF-------- 149 (670)
Q Consensus 83 ~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~---v~-~~~g~~-------- 149 (670)
+.++|+..|....+ . .| +......+..++.+.+..+....+..........+. +. ...+..
T Consensus 120 --~~~~A~~~~~~al~--~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (259)
T d1xnfa_ 120 --RDKLAQDDLLAFYQ--D--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMER 193 (259)
T ss_dssp --CHHHHHHHHHHHHH--H--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHH
T ss_pred --hHHHHHHHHHHHHh--h--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 78899999998876 2 34 444444455555666665555555555444322110 00 000110
Q ss_pred ------------ch---HHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 150 ------------GD---PLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 150 ------------pd---tyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
|+ +|..|=..|...|++++|...|+.....+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 194 LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 11 56667788899999999999999887654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.72 E-value=0.04 Score=53.49 Aligned_cols=214 Identities=8% Similarity=-0.015 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHchh--CCCCCCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhcc--C-CCCC
Q 005912 32 HFNHLLSCQATCGIPEVAFATFENMEY--GEDYMKP-DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDH--K-RLQP 105 (670)
Q Consensus 32 tyn~LI~~yak~G~~e~A~~lf~~M~~--~~~gi~P-d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~--~-gi~P 105 (670)
.|.-.-+.|-..|++++|...|.+... ...+-.+ -..+|+.+-.+|.+.| +.++|++.|.+..... . ....
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~---~~~~A~~~~~~a~~~~~~~~~~~~ 115 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG---NSVNAVDSLENAIQIFTHRGQFRR 115 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhC---CcHHHHHHHHHhhHHhhhcccchh
Confidence 355566788899999999999988752 0111112 2468999999999999 6778887777643310 1 1111
Q ss_pred CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHccCCCcccccCCCCc---hHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 005912 106 NVKTYALLVECFT-KYCAVTEAIRHFRALQNYEGGTKVLHNEGNFG---DPLSLYLRALCREGRIIELLEALEAMAKDNQ 181 (670)
Q Consensus 106 d~~Ty~~LL~a~a-k~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~p---dtyn~LI~ay~k~G~~eeA~~vf~~M~~~gi 181 (670)
-..++..+...|- ..|++++|.+.|......-.. .+..+ .+|+.+...|.+.|++++|..+|+.......
T Consensus 116 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~------~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~ 189 (290)
T d1qqea_ 116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQ------DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM 189 (290)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHh------cCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCc
Confidence 2445566666664 469999999999887642100 01111 1788899999999999999999999877543
Q ss_pred CCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhccCCCCCCcc-cchhhhhHHHHH
Q 005912 182 PVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAV-GFIYSNPMETSF 260 (670)
Q Consensus 182 ~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~~gi~Pd~d-~~ty~~LIe~lv 260 (670)
. .+..-.. ....+.... ..+...|....+...|+...+.. |... +.-+ .++..++
T Consensus 190 ~-~~~~~~~--~~~~~~~~~------------------~~~l~~~d~~~A~~~~~~~~~~~--~~~~~sre~-~~l~~l~ 245 (290)
T d1qqea_ 190 G-NRLSQWS--LKDYFLKKG------------------LCQLAATDAVAAARTLQEGQSED--PNFADSRES-NFLKSLI 245 (290)
T ss_dssp S-CTTTGGG--HHHHHHHHH------------------HHHHHTTCHHHHHHHHHGGGCC-----------H-HHHHHHH
T ss_pred c-chhhhhh--HHHHHHHHH------------------HHHHHhccHHHHHHHHHHHHHhC--CCccchHHH-HHHHHHH
Confidence 2 1111000 001111111 11234578888999988876532 2211 1111 2233344
Q ss_pred HHHHh--cCCHHHHHHHHHH
Q 005912 261 KQRCL--EDGKKYHRKLLRT 278 (670)
Q Consensus 261 ~~~~~--~G~~e~A~~Lf~~ 278 (670)
.++-. .+.+.+|+.-|..
T Consensus 246 ~a~~~~d~e~~~eai~~y~~ 265 (290)
T d1qqea_ 246 DAVNEGDSEQLSEHCKEFDN 265 (290)
T ss_dssp HHHHTTCTTTHHHHHHHHTT
T ss_pred HHHHhcCHHHHHHHHHHHHH
Confidence 55443 3456777777754
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.49 E-value=0.012 Score=57.55 Aligned_cols=173 Identities=9% Similarity=-0.033 Sum_probs=116.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHchh---CCCCCCCCHHHHHHHH
Q 005912 3 AEDCKAGDHSNALEIAYEMEAA----GRMA-TTFHFNHLLSCQATCGIPEVAFATFENMEY---GEDYMKPDTETYNCVI 74 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~----Gv~P-d~~tyn~LI~~yak~G~~e~A~~lf~~M~~---~~~gi~Pd~~tyn~LI 74 (670)
+.|-..|++++|++.|.+..+. +-.+ -..+|+.+-.+|.+.|++++|...|++... ..........++..+.
T Consensus 45 ~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 124 (290)
T d1qqea_ 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (290)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHH
Confidence 4577889999999999887642 2222 246788899999999999999999987542 0111122245566666
Q ss_pred HHHHH-cCCcccHHHHHHHHHHhHhcc--CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCc
Q 005912 75 QAYTR-AESYDRVQDVAELLGMMVEDH--KRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFG 150 (670)
Q Consensus 75 ~ay~k-~g~~~~~~eAl~lf~eM~~~~--~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~p 150 (670)
..|-. .| +.++|++.|.+..... .+-.+ -..+|..+...|.+.|++++|..+|.............. ...+
T Consensus 125 ~~~~~~~~---~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~--~~~~ 199 (290)
T d1qqea_ 125 EILENDLH---DYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ--WSLK 199 (290)
T ss_dssp HHHHHTTC---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTG--GGHH
T ss_pred HhHhhHHH---HHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhh--hhHH
Confidence 66644 57 7888998888764310 11112 135678889999999999999999999887543222110 0011
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 151 DPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 151 dtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
..|..++-.|...|+++.|...|+...+..
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~ 229 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSED 229 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 134455567778999999999999887764
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.36 E-value=0.14 Score=50.47 Aligned_cols=132 Identities=8% Similarity=0.031 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC-HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CH
Q 005912 30 TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD-TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NV 107 (670)
Q Consensus 30 ~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd-~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~ 107 (670)
...|+.+=..+.+.+..++|..+++.... +.|+ ...|+..-.++...|. +.++|+..+....+ +.| +.
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~----lnP~~~~a~~~r~~~l~~l~~--~~~eal~~~~~al~----~~p~~~ 112 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIE----LNAANYTVWHFRRVLLKSLQK--DLHEEMNYITAIIE----EQPKNY 112 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHH----HCTTCH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH----HCCCChHHHHHHHHHHHHhCc--CHHHHHHHHHHHHH----HHHhhh
Confidence 44566777778889999999999999873 3554 5678888888888772 48899999999876 345 47
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 108 KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 108 ~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
.+|..+-..+.+.|++++|...|..+.+..... ..+|+.+-..|.+.|++++|...|+...+.+
T Consensus 113 ~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n---------~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~ 176 (315)
T d2h6fa1 113 QVWHHRRVLVEWLRDPSQELEFIADILNQDAKN---------YHAWQHRQWVIQEFKLWDNELQYVDQLLKED 176 (315)
T ss_dssp HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC
T ss_pred hHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcc---------hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC
Confidence 889999999999999999999999998753221 2289999999999999999999999998876
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.29 E-value=0.026 Score=47.30 Aligned_cols=88 Identities=11% Similarity=-0.013 Sum_probs=56.4
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCc
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESY 83 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~ 83 (670)
.+.+.|++++|+.+|.+.... -+-+...|+.+-.+|.+.|++++|...|+.... .. ..+...|..+-.+|...|
T Consensus 12 ~~~~~g~~~eAi~~~~~al~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~-p~~~~~~~~~g~~~~~~~-- 85 (117)
T d1elwa_ 12 KALSVGNIDDALQCYSEAIKL-DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD--LK-PDWGKGYSRKAAALEFLN-- 85 (117)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HC-TTCHHHHHHHHHHHHHTT--
T ss_pred HHHHcCCHHHHHHHHHHHHhc-CCcchhhhhcccccccccccccccchhhhhHHH--hc-cchhhHHHHHHHHHHHcc--
Confidence 355667777777777766653 123455666666777777777777777776652 11 345666777777777777
Q ss_pred ccHHHHHHHHHHhHh
Q 005912 84 DRVQDVAELLGMMVE 98 (670)
Q Consensus 84 ~~~~eAl~lf~eM~~ 98 (670)
+.++|+..|..-.+
T Consensus 86 -~~~~A~~~~~~a~~ 99 (117)
T d1elwa_ 86 -RFEEAKRTYEEGLK 99 (117)
T ss_dssp -CHHHHHHHHHHHHT
T ss_pred -CHHHHHHHHHHHHH
Confidence 66677777776654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.20 E-value=0.031 Score=50.32 Aligned_cols=98 Identities=12% Similarity=0.109 Sum_probs=72.0
Q ss_pred CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCccc
Q 005912 65 PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVL 143 (670)
Q Consensus 65 Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~ 143 (670)
|++....-.=+.|.+.| +.++|+..|.+... +.| +...|..+-.+|.+.|+++.|...|....+..+ +
T Consensus 2 ~~a~~l~~~Gn~~~~~g---~~~~Ai~~~~kal~----~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p--~-- 70 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGR---KYPEAAACYGRAIT----RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG--Q-- 70 (201)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT--T--
T ss_pred hhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH----hCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCC--C--
Confidence 55556666667788888 77888888888766 234 567788888888888888888888888765321 1
Q ss_pred ccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005912 144 HNEGNFGDPLSLYLRALCREGRIIELLEALEAMAK 178 (670)
Q Consensus 144 ~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~ 178 (670)
.+.+|..+-.+|.+.|++++|...|+...+
T Consensus 71 -----~~~a~~~lg~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 71 -----SVKAHFFLGQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp -----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 112678888888888888888888886644
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.14 E-value=0.032 Score=49.12 Aligned_cols=88 Identities=10% Similarity=-0.032 Sum_probs=65.6
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCc
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESY 83 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~ 83 (670)
.|.+.|++++|+..|.+..+.. +-+...|+.+-..|.+.|++++|...|+...+ .. .-+...|..+..+|...|
T Consensus 19 ~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~--~~-p~~~~a~~~~g~~~~~~g-- 92 (159)
T d1a17a_ 19 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LD-KKYIKGYYRRAASNMALG-- 92 (159)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC-TTCHHHHHHHHHHHHHTT--
T ss_pred HHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHH--Hc-ccchHHHHHHHHHHHHcC--
Confidence 4677888888888888877653 33677777777888888888888888887763 11 334577888888888888
Q ss_pred ccHHHHHHHHHHhHh
Q 005912 84 DRVQDVAELLGMMVE 98 (670)
Q Consensus 84 ~~~~eAl~lf~eM~~ 98 (670)
+.++|+..|.+...
T Consensus 93 -~~~eA~~~~~~a~~ 106 (159)
T d1a17a_ 93 -KFRAALRDYETVVK 106 (159)
T ss_dssp -CHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHH
Confidence 67788888888766
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.12 E-value=0.024 Score=49.92 Aligned_cols=90 Identities=14% Similarity=0.037 Sum_probs=77.1
Q ss_pred HHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHH
Q 005912 38 SCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVEC 116 (670)
Q Consensus 38 ~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a 116 (670)
+.|.+.|++++|...|.+..+ .. .-+...|+.+-.+|.+.| +.++|+..|.+..+ +.| +..+|..+..+
T Consensus 18 n~~~~~~~y~~A~~~~~~al~--~~-p~~~~~~~~lg~~~~~~~---~~~~A~~~~~kal~----~~p~~~~a~~~~g~~ 87 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIE--LN-PSNAIYYGNRSLAYLRTE---CYGYALGDATRAIE----LDKKYIKGYYRRAAS 87 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HS-TTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HCTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHhhhccc--cc-hhhhhhhhhhHHHHHhcc---ccchHHHHHHHHHH----HcccchHHHHHHHHH
Confidence 467799999999999999873 21 346788999999999999 89999999999987 345 45799999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcc
Q 005912 117 FTKYCAVTEAIRHFRALQNYE 137 (670)
Q Consensus 117 ~ak~g~~d~A~~lf~~M~~~g 137 (670)
|...|++++|...+.......
T Consensus 88 ~~~~g~~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 88 NMALGKFRAALRDYETVVKVK 108 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHHHHcC
Confidence 999999999999999998754
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.08 E-value=0.11 Score=47.21 Aligned_cols=124 Identities=10% Similarity=-0.056 Sum_probs=96.6
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCc
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESY 83 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~ 83 (670)
.+...|+++.|++.|.++ ..|+..+|..+=..|.+.|++++|...|++-.+ .. .-+...|+.+=.+|.+.|
T Consensus 14 ~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ld-p~~~~a~~~~g~~~~~~g-- 84 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RD-KHLAVAYFQRGMLYYQTE-- 84 (192)
T ss_dssp HHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC-TTCHHHHHHHHHHHHHTT--
T ss_pred HHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--Hh-hhhhhhHHHHHHHHHhhc--
Confidence 467789999999999864 357888888899999999999999999999773 11 345788999999999999
Q ss_pred ccHHHHHHHHHHhHhccC----------CC--CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcc
Q 005912 84 DRVQDVAELLGMMVEDHK----------RL--QPN-VKTYALLVECFTKYCAVTEAIRHFRALQNYE 137 (670)
Q Consensus 84 ~~~~eAl~lf~eM~~~~~----------gi--~Pd-~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g 137 (670)
+.++|+..|++-..... ++ .++ ..++..+-.+|.+.|++++|.+.|....+..
T Consensus 85 -~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 85 -KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp -CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred -cHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 78899988887653100 11 111 3556667778999999999999999877643
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.03 E-value=0.034 Score=50.01 Aligned_cols=98 Identities=13% Similarity=0.039 Sum_probs=78.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC-
Q 005912 28 ATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN- 106 (670)
Q Consensus 28 Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd- 106 (670)
|+...+.-.=+.|.+.|++++|...|.+... .. +.+...|+.+-.+|.+.| +.++|+..|..... +.|+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~--~~-p~~~~~~~~lg~~y~~~~---~~~~Ai~~~~~al~----l~p~~ 71 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT--RN-PLVAVYYTNRALCYLKMQ---QPEQALADCRRALE----LDGQS 71 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC-SCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTT----SCTTC
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hC-CCCHHHHHhHHHHHhhhh---hhhhhhHHHHHHHH----hCCCc
Confidence 5555565666788899999999999988652 11 346778998999999999 78899999998865 5674
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005912 107 VKTYALLVECFTKYCAVTEAIRHFRALQN 135 (670)
Q Consensus 107 ~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~ 135 (670)
..+|..+-.+|.+.|++++|...|.....
T Consensus 72 ~~a~~~lg~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 72 VKAHFFLGQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67888899999999999999999988765
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.00 E-value=0.0066 Score=52.07 Aligned_cols=99 Identities=13% Similarity=0.002 Sum_probs=75.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCH-HHHHH
Q 005912 34 NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV-KTYAL 112 (670)
Q Consensus 34 n~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~-~Ty~~ 112 (670)
..|++.+...+++++|.+.|+.... .+ ..+..++..+-.++.+.++.++..+|+.+|.+... ....|+. .+|..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~--~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~--~~~~~~~~~~~~~ 77 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKA--AG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP--KGSKEEQRDYVFY 77 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT--TSCHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHh--hC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHh--ccCCchHHHHHHH
Confidence 5678888888999999999998772 11 34678888888888877755567789999998866 3333332 36777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcc
Q 005912 113 LVECFTKYCAVTEAIRHFRALQNYE 137 (670)
Q Consensus 113 LL~a~ak~g~~d~A~~lf~~M~~~g 137 (670)
|-.+|.+.|++++|.+.|+.+.+..
T Consensus 78 Lg~~y~~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 78 LAVGNYRLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhC
Confidence 8888999999999999999988753
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.46 E-value=0.069 Score=44.51 Aligned_cols=90 Identities=17% Similarity=0.086 Sum_probs=72.0
Q ss_pred HHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHH
Q 005912 75 QAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPL 153 (670)
Q Consensus 75 ~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdty 153 (670)
+.+.+.| +.++|+.+|.+... +.| +...|..+-.+|.+.|++++|...+....+..... +..|
T Consensus 11 ~~~~~~g---~~~eAi~~~~~al~----~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~ 74 (117)
T d1elwa_ 11 NKALSVG---NIDDALQCYSEAIK----LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW---------GKGY 74 (117)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------HHHH
T ss_pred HHHHHcC---CHHHHHHHHHHHHh----cCCcchhhhhcccccccccccccccchhhhhHHHhccch---------hhHH
Confidence 3466778 78899999999876 234 56778888999999999999999999988754321 1278
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 154 SLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 154 n~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
..+-.+|...|++++|...|+...+..
T Consensus 75 ~~~g~~~~~~~~~~~A~~~~~~a~~~~ 101 (117)
T d1elwa_ 75 SRKAAALEFLNRFEEAKRTYEEGLKHE 101 (117)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 888899999999999999999887764
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=94.85 E-value=0.078 Score=43.83 Aligned_cols=87 Identities=10% Similarity=-0.036 Sum_probs=67.6
Q ss_pred HHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchH
Q 005912 74 IQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDP 152 (670)
Q Consensus 74 I~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdt 152 (670)
-..+.+.| +..+|+..|++... +.| +..+|..+-.++.+.|++++|...|....+..+. .+.+
T Consensus 23 g~~~~~~g---~~~~A~~~~~~al~----~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---------~~~a 86 (112)
T d1hxia_ 23 GLSMLKLA---NLAEAALAFEAVCQ----KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK---------DIAV 86 (112)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------CHHH
T ss_pred HHHHHHHh---hhHHHHHHHhhhcc----cccccchhhhhhhhhhhhhhhHHHhhcccccccccccc---------cccc
Confidence 34566778 78889999988876 345 4778888888899999999999999888774321 1227
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 005912 153 LSLYLRALCREGRIIELLEALEAM 176 (670)
Q Consensus 153 yn~LI~ay~k~G~~eeA~~vf~~M 176 (670)
|..|-..|...|+.++|.+.|++.
T Consensus 87 ~~~la~~y~~~g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 87 HAALAVSHTNEHNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHH
Confidence 888888999999999999988864
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.60 E-value=0.068 Score=45.32 Aligned_cols=102 Identities=10% Similarity=0.028 Sum_probs=77.2
Q ss_pred CHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHchhCCCCCCCC-HHHHHHHHHH
Q 005912 1 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI---PEVAFATFENMEYGEDYMKPD-TETYNCVIQA 76 (670)
Q Consensus 1 LI~~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~---~e~A~~lf~~M~~~~~gi~Pd-~~tyn~LI~a 76 (670)
|++.+...+++++|.+.|++....+ ..+..++..+-.++.+.++ +++|..+|++.. .....|+ ..+|..|=.+
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l--~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL--PKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHT--TTSCHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH--hccCCchHHHHHHHHHHH
Confidence 4677888999999999999988753 3466777778888877655 457999999987 3332333 3477788889
Q ss_pred HHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHH
Q 005912 77 YTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 112 (670)
Q Consensus 77 y~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~ 112 (670)
|.+.| +.++|++.|.+..+ +.|+..-...
T Consensus 82 y~~~g---~~~~A~~~~~~aL~----~~P~~~~A~~ 110 (122)
T d1nzna_ 82 NYRLK---EYEKALKYVRGLLQ----TEPQNNQAKE 110 (122)
T ss_dssp HHHTT---CHHHHHHHHHHHHH----HCTTCHHHHH
T ss_pred HHHHh---hhHHHHHHHHHHHH----hCcCCHHHHH
Confidence 99999 78999999999987 5687554333
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=94.57 E-value=0.089 Score=43.44 Aligned_cols=85 Identities=15% Similarity=0.040 Sum_probs=51.0
Q ss_pred HHHHcCChHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHH
Q 005912 39 CQATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 117 (670)
Q Consensus 39 ~yak~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ 117 (670)
.+.+.|++++|...|++... +.| +...|..+-.+|.+.| +.++|+..|....+. -.-+...|..+-.+|
T Consensus 25 ~~~~~g~~~~A~~~~~~al~----~~p~~~~a~~~lg~~~~~~~---~~~~A~~~~~~al~~---~p~~~~a~~~la~~y 94 (112)
T d1hxia_ 25 SMLKLANLAEAALAFEAVCQ----KEPEREEAWRSLGLTQAENE---KDGLAIIALNHARML---DPKDIAVHAALAVSH 94 (112)
T ss_dssp HHHHTTCHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHhhhcc----cccccchhhhhhhhhhhhhh---hHHHhhccccccccc---ccccccchHHHHHHH
Confidence 34556666666666666542 123 4566666666666666 566666666665542 234556666666666
Q ss_pred HHcCCHHHHHHHHHHH
Q 005912 118 TKYCAVTEAIRHFRAL 133 (670)
Q Consensus 118 ak~g~~d~A~~lf~~M 133 (670)
.+.|+.++|.+.+++.
T Consensus 95 ~~~g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 95 TNEHNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHH
Confidence 6666666666666553
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.37 E-value=0.029 Score=55.42 Aligned_cols=144 Identities=11% Similarity=-0.000 Sum_probs=93.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHH-HHHH---HHH-------HHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHH
Q 005912 10 DHSNALEIAYEMEAAGRMATTFH-FNHL---LSC-------QATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYT 78 (670)
Q Consensus 10 ~~~~Al~lf~~M~~~Gv~Pd~~t-yn~L---I~~-------yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~ 78 (670)
..++|++++.+..+. .|+..+ ||.. +.. +...|.+++|..+|+.... .-..+...|..+-.++.
T Consensus 44 ~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~---~~pk~~~~~~~~~~~~~ 118 (334)
T d1dcea1 44 LDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR---VNPKSYGTWHHRCWLLS 118 (334)
T ss_dssp CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHH---hCCCcHHHHHHhhHHHH
Confidence 347899999988763 465443 3322 222 3334557888888888762 11346777888877877
Q ss_pred HcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHH
Q 005912 79 RAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL-LVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYL 157 (670)
Q Consensus 79 k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~-LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI 157 (670)
..+.. +..+|+..+....+ .. .++...+.. +-..+...+..+.|...+.......+.. +.+|+.+-
T Consensus 119 ~~~~~-~~~~a~~~~~~al~--~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~---------~~a~~~l~ 185 (334)
T d1dcea1 119 RLPEP-NWARELELCARFLE--AD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN---------YSSWHYRS 185 (334)
T ss_dssp TCSSC-CHHHHHHHHHHHHH--HC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC---------HHHHHHHH
T ss_pred Hhccc-cHHHHHHHHHHHHh--hC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCC---------HHHHHHHH
Confidence 77632 37889999988876 21 234555443 3466667889999999888776643221 11788888
Q ss_pred HHHHHcCCHHHHHH
Q 005912 158 RALCREGRIIELLE 171 (670)
Q Consensus 158 ~ay~k~G~~eeA~~ 171 (670)
..|.+.|++++|..
T Consensus 186 ~~~~~~~~~~~A~~ 199 (334)
T d1dcea1 186 CLLPQLHPQPDSGP 199 (334)
T ss_dssp HHHHHHSCCCCSSS
T ss_pred HHHHHhcCHHHHHH
Confidence 88888888776643
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.19 E-value=0.24 Score=43.90 Aligned_cols=88 Identities=9% Similarity=-0.023 Sum_probs=54.8
Q ss_pred HHHhcCChHHHHHHHHHHHHc-CCCC-------------CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCC-CHH
Q 005912 4 EDCKAGDHSNALEIAYEMEAA-GRMA-------------TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP-DTE 68 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~-Gv~P-------------d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~P-d~~ 68 (670)
.|.+.|+++.|+..|.+.... ...+ -..+|+.+-.+|.+.|++++|...++.... +.| ++.
T Consensus 22 ~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~----~~p~~~~ 97 (170)
T d1p5qa1 22 VYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE----LDSNNEK 97 (170)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhh----ccccchh
Confidence 466788999999998876643 1111 123445555666666777777776666552 123 566
Q ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHhHh
Q 005912 69 TYNCVIQAYTRAESYDRVQDVAELLGMMVE 98 (670)
Q Consensus 69 tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~ 98 (670)
.|..+-.+|.+.| +.++|+..|.+..+
T Consensus 98 a~~~~g~~~~~~g---~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 98 GLSRRGEAHLAVN---DFELARADFQKVLQ 124 (170)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhh---hHHHHHHHHHHHHH
Confidence 6666666677777 56666667766655
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.19 E-value=2.8 Score=41.30 Aligned_cols=100 Identities=15% Similarity=0.102 Sum_probs=50.2
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccH
Q 005912 7 KAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRV 86 (670)
Q Consensus 7 k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~ 86 (670)
+.|.++.|..+|..+.. |.-++..|.+.+++..|..++.... +..+|.-+...+.+.. ..
T Consensus 26 ~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~--------~~~~~k~~~~~l~~~~---e~ 85 (336)
T d1b89a_ 26 DEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN--------STRTWKEVCFACVDGK---EF 85 (336)
T ss_dssp ---CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT--------CHHHHHHHHHHHHHTT---CH
T ss_pred HCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC--------CHHHHHHHHHHHHhCc---HH
Confidence 45555555555554432 4555566666666666666555433 4445666666666555 22
Q ss_pred HHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005912 87 QDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL 133 (670)
Q Consensus 87 ~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M 133 (670)
.- ..+.. ..+..+......++..|-..|..++...++...
T Consensus 86 ~l-----a~i~~--~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~ 125 (336)
T d1b89a_ 86 RL-----AQMCG--LHIVVHADELEELINYYQDRGYFEELITMLEAA 125 (336)
T ss_dssp HH-----HHHTT--TTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HH-----HHHHH--HHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 21 12222 223334444455666666666666666666544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.64 E-value=0.12 Score=50.58 Aligned_cols=219 Identities=6% Similarity=-0.143 Sum_probs=135.1
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHchhCCCCCCCCHHHHHHHH-HHHHHcC
Q 005912 5 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG--IPEVAFATFENMEYGEDYMKPDTETYNCVI-QAYTRAE 81 (670)
Q Consensus 5 y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G--~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI-~ay~k~g 81 (670)
+...|.+.+|+.+|+...... +-+...|..+-.++...+ +.++|...+..... . -.++...|..++ ..+...+
T Consensus 83 ~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~--~-~~~~~~~~~~~~~~~~~~~~ 158 (334)
T d1dcea1 83 EESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLE--A-DERNFHCWDYRRFVAAQAAV 158 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHh--h-CchhhhhhhhHHHHHHHhcc
Confidence 344566889999999887642 335666777766666665 48899999999862 1 134567766555 4555667
Q ss_pred CcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHH
Q 005912 82 SYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRAL 160 (670)
Q Consensus 82 ~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay 160 (670)
..++|+..+..... +.| +...|+.+-..+.+.|+.++|...+....... | ....+...+
T Consensus 159 ---~~~~Al~~~~~~i~----~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~------------~-~~~~~~~~~ 218 (334)
T d1dcea1 159 ---APAEELAFTDSLIT----RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL------------L-KELELVQNA 218 (334)
T ss_dssp ---CHHHHHHHHHTTTT----TTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHH------------H-HHHHHHHHH
T ss_pred ---ccHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhH------------H-HHHHHHHHH
Confidence 78899999998876 344 56778888888888888877655544333210 0 222344556
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCCCchHHHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHHHHhcc
Q 005912 161 CREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGK 240 (670)
Q Consensus 161 ~k~G~~eeA~~vf~~M~~~gi~i~p~~~i~~~ty~~ll~a~~~ll~~m~~~G~~pd~i~~~~~~~g~~~~a~~lf~~m~~ 240 (670)
...+..+++...+......... .+.. +..+... +...+...++...+.....
T Consensus 219 ~~l~~~~~a~~~~~~~l~~~~~-~~~~------~~~l~~~---------------------~~~~~~~~~a~~~~~~~~~ 270 (334)
T d1dcea1 219 FFTDPNDQSAWFYHRWLLGRAE-PLFR------CELSVEK---------------------STVLQSELESCKELQELEP 270 (334)
T ss_dssp HHHCSSCSHHHHHHHHHHSCCC-CSSS------CCCCHHH---------------------HHHHHHHHHHHHHHHHHCT
T ss_pred HHhcchhHHHHHHHHHHHhCcc-hhhH------HHHHHHH---------------------HHHHhhHHHHHHHHHHHHh
Confidence 6677778888888776665421 1111 1111111 1222345556666655543
Q ss_pred CCCCCCcccchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005912 241 TPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNE 282 (670)
Q Consensus 241 ~gi~Pd~d~~ty~~LIe~lv~~~~~~G~~e~A~~Lf~~M~~~ 282 (670)
. ++ ....+++ .+...|.+.|+.++|.+.|+.....
T Consensus 271 ~----~p--~~~~~~~-~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 271 E----NK--WCLLTII-LLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp T----CH--HHHHHHH-HHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred h----Cc--hHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 2 22 2222222 3447788899999999999988764
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=93.56 E-value=0.45 Score=41.21 Aligned_cols=20 Identities=20% Similarity=0.011 Sum_probs=14.1
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 005912 4 EDCKAGDHSNALEIAYEMEA 23 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~ 23 (670)
.|.+.|++.+|+..|.+...
T Consensus 26 ~~f~~~~y~~A~~~Y~~al~ 45 (153)
T d2fbna1 26 EFFKKNEINEAIVKYKEALD 45 (153)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHh
Confidence 45677788888887776654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.18 E-value=0.29 Score=44.08 Aligned_cols=100 Identities=14% Similarity=0.209 Sum_probs=65.5
Q ss_pred HHHhcCChHHHHHHHHHHHHc--CCC-CC------------------HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCC
Q 005912 4 EDCKAGDHSNALEIAYEMEAA--GRM-AT------------------TFHFNHLLSCQATCGIPEVAFATFENMEYGEDY 62 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~--Gv~-Pd------------------~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~g 62 (670)
.....|+++.|.+.|..-... |-. ++ ...+..+...+.+.|++++|...+++... .
T Consensus 20 ~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~--~- 96 (179)
T d2ff4a2 20 HAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF--E- 96 (179)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H-
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHH--h-
Confidence 456789999999999887653 211 11 12346667777777888888888777762 1
Q ss_pred CCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhc---cCCCCCCHHH
Q 005912 63 MKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVED---HKRLQPNVKT 109 (670)
Q Consensus 63 i~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~---~~gi~Pd~~T 109 (670)
-.-+...|..++.+|.+.| +..+|++.|+++... .-|+.|...|
T Consensus 97 ~P~~e~~~~~l~~al~~~G---r~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 97 HPYREPLWTQLITAYYLSD---RQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp STTCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred CCccHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 1235677888888888888 677777777765320 1467776554
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.10 E-value=0.39 Score=42.42 Aligned_cols=97 Identities=11% Similarity=0.009 Sum_probs=75.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHchh---CCCCCCCC---------HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccC
Q 005912 34 NHLLSCQATCGIPEVAFATFENMEY---GEDYMKPD---------TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK 101 (670)
Q Consensus 34 n~LI~~yak~G~~e~A~~lf~~M~~---~~~gi~Pd---------~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~ 101 (670)
+-.=+.|.+.|++++|...|.+... ...+.... ..+|+-+-.+|.+.| +.++|+..+..-..
T Consensus 17 ~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~---~~~~A~~~~~~al~--- 90 (170)
T d1p5qa1 17 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ---AFSAAIESCNKALE--- 90 (170)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhh---hcccccchhhhhhh---
Confidence 3344578889999999999987653 01111111 356777888899999 78899999999877
Q ss_pred CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcc
Q 005912 102 RLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYE 137 (670)
Q Consensus 102 gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g 137 (670)
+.| +..+|..+-.+|...|++++|...|+...+..
T Consensus 91 -~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 91 -LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp -HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -ccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 346 68889999999999999999999999998753
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.77 E-value=0.55 Score=39.26 Aligned_cols=91 Identities=11% Similarity=0.035 Sum_probs=55.3
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhC---CCCCCCC-HHHHHHHHHHHHH
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYG---EDYMKPD-TETYNCVIQAYTR 79 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~---~~gi~Pd-~~tyn~LI~ay~k 79 (670)
.|-+.|++++|+..|.+..+.+ +.+...|..+-.+|.+.|++++|...|++...- .....+. ..+|..+=..+..
T Consensus 13 ~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~ 91 (128)
T d1elra_ 13 DAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFK 91 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888877776642 235677777777777778888777777775520 0000000 2345555555566
Q ss_pred cCCcccHHHHHHHHHHhHh
Q 005912 80 AESYDRVQDVAELLGMMVE 98 (670)
Q Consensus 80 ~g~~~~~~eAl~lf~eM~~ 98 (670)
.+ +.++|++.|..-..
T Consensus 92 ~~---~~~~A~~~~~kal~ 107 (128)
T d1elra_ 92 EE---KYKDAIHFYNKSLA 107 (128)
T ss_dssp TT---CHHHHHHHHHHHHH
T ss_pred hC---CHHHHHHHHHHHHh
Confidence 66 56677777766543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.37 E-value=0.72 Score=41.29 Aligned_cols=100 Identities=14% Similarity=0.068 Sum_probs=76.8
Q ss_pred CHHHHHHHH---HHHHHcCChHHHHHHHHHchhC-CCCCCCC------------------HHHHHHHHHHHHHcCCcccH
Q 005912 29 TTFHFNHLL---SCQATCGIPEVAFATFENMEYG-EDYMKPD------------------TETYNCVIQAYTRAESYDRV 86 (670)
Q Consensus 29 d~~tyn~LI---~~yak~G~~e~A~~lf~~M~~~-~~gi~Pd------------------~~tyn~LI~ay~k~g~~~~~ 86 (670)
|+..|-.++ ......|++++|...|.+-..- ...+.++ ...+..+...+.+.| +.
T Consensus 7 D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g---~~ 83 (179)
T d2ff4a2 7 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACG---RA 83 (179)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT---CH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---Cc
Confidence 344444444 4577889999999999887630 0111111 256788999999999 89
Q ss_pred HHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005912 87 QDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQN 135 (670)
Q Consensus 87 ~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~ 135 (670)
++|+..+..... +.| +...|..++.+|.+.|+..+|.+.|+.+.+
T Consensus 84 ~~Al~~~~~al~----~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 84 SAVIAELEALTF----EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHHHHHH----HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH----hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999999987 344 678999999999999999999999998765
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.06 E-value=0.39 Score=40.22 Aligned_cols=99 Identities=5% Similarity=-0.017 Sum_probs=71.8
Q ss_pred HHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCc
Q 005912 72 CVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFG 150 (670)
Q Consensus 72 ~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~p 150 (670)
.+=..|.+.| +.++|+..|.+..+ +.| +..+|..+-.+|.+.|+++.|.+.+..+........-.+ -...
T Consensus 9 ~~G~~~~~~~---~y~~Ai~~y~~al~----~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~--~~~a 79 (128)
T d1elra_ 9 ELGNDAYKKK---DFDTALKHYDKAKE----LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY--RQIA 79 (128)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCH--HHHH
T ss_pred HHHHHHHHcC---CHHHHHHHHHHHHH----hCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHH--HHHH
Confidence 3345678888 78899999999887 234 578899999999999999999999999876321110000 0000
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 005912 151 DPLSLYLRALCREGRIIELLEALEAMAKD 179 (670)
Q Consensus 151 dtyn~LI~ay~k~G~~eeA~~vf~~M~~~ 179 (670)
.+|..+=..+...+++++|...|..-...
T Consensus 80 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 80 KAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 15667777888899999999999876543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=91.72 E-value=0.13 Score=49.68 Aligned_cols=124 Identities=10% Similarity=-0.041 Sum_probs=82.9
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCC-HHHHHHHHHHHHHcCCc
Q 005912 5 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD-TETYNCVIQAYTRAESY 83 (670)
Q Consensus 5 y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd-~~tyn~LI~ay~k~g~~ 83 (670)
..+.|++++|+..|++-.+. -+-|...+..|...|+..|++++|...|+...+ +.|+ ...+..+-..+...+
T Consensus 6 aL~~G~l~eAl~~l~~al~~-~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~----l~P~~~~~~~~l~~ll~a~~-- 78 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIK----LFPEYLPGASQLRHLVKAAQ-- 78 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCGGGHHHHHHHHHHHHHHH--
T ss_pred HHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHhcc--
Confidence 45679999999999998875 344789999999999999999999999999873 3454 344444444433333
Q ss_pred ccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccC
Q 005912 84 DRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEG 138 (670)
Q Consensus 84 ~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~ 138 (670)
...+++.-+..-.. .+-.++...+......+...|+.++|.+++........
T Consensus 79 -~~~~a~~~~~~~~~--~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p 130 (264)
T d1zbpa1 79 -ARKDFAQGAATAKV--LGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 130 (264)
T ss_dssp -HHHHHTTSCCCEEC--CCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred -ccHHHHHHhhhhhc--ccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 22222111110000 11122345555666778899999999999999887543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.43 E-value=1.6 Score=37.91 Aligned_cols=97 Identities=9% Similarity=0.018 Sum_probs=69.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHchhC------------CCCCC-CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhcc
Q 005912 34 NHLLSCQATCGIPEVAFATFENMEYG------------EDYMK-PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDH 100 (670)
Q Consensus 34 n~LI~~yak~G~~e~A~~lf~~M~~~------------~~gi~-Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~ 100 (670)
...-..+.+.|+++.|...|.+...- ...+. .+...|+.+-.+|.+.| +.++|+..|.+..+
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~---~~~~Ai~~~~~al~-- 105 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMS---DWQGAVDSCLEALE-- 105 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhc---ccchhhhhhhhhhh--
Confidence 33445566777777777777654310 00112 24456777778888899 78899999999876
Q ss_pred CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcc
Q 005912 101 KRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYE 137 (670)
Q Consensus 101 ~gi~P-d~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g 137 (670)
+.| +..+|..+-.+|.+.|+++.|.+.|....+..
T Consensus 106 --~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~ 141 (169)
T d1ihga1 106 --IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 141 (169)
T ss_dssp --TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred --hhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 334 56788889999999999999999999888753
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=91.41 E-value=1.8 Score=37.06 Aligned_cols=64 Identities=23% Similarity=0.127 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCcccccCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 108 KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 108 ~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pdtyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
.+|+.+-.+|.+.|++++|.+.+.......+. ++. +|..+-.+|...|++++|...|+...+-+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~-~~k--------a~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVK--------ALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHH--------HHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccch-hhh--------hhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 47788889999999999999999998875322 222 88999999999999999999999887764
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=90.78 E-value=0.66 Score=40.03 Aligned_cols=106 Identities=17% Similarity=0.077 Sum_probs=70.8
Q ss_pred HHHHHHHHH--HHHHcCCcccHHHHHHHHHHhHhccCCCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005912 67 TETYNCVIQ--AYTRAESYDRVQDVAELLGMMVEDHKRLQPN----------VKTYALLVECFTKYCAVTEAIRHFRALQ 134 (670)
Q Consensus 67 ~~tyn~LI~--ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd----------~~Ty~~LL~a~ak~g~~d~A~~lf~~M~ 134 (670)
..+|+.+-. .+.+.| +.++|+..|.+-.+....+ |+ ..+|+.+-.+|.+.|++++|...+....
T Consensus 7 a~a~~~l~~g~~~~~~g---~y~~Ai~~y~~Al~i~~~~-~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al 82 (156)
T d2hr2a1 7 VGAYLALSDAQRQLVAG---EYDEAAANCRRAMEISHTM-PPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL 82 (156)
T ss_dssp HHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHTTS-CTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhChhh-hhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh
Confidence 356777644 445668 6788888888876521222 22 4678999999999999999999998877
Q ss_pred HccCCCcccccCCCCch---HHHHHHHHHHHcCCHHHHHHHHHHHh
Q 005912 135 NYEGGTKVLHNEGNFGD---PLSLYLRALCREGRIIELLEALEAMA 177 (670)
Q Consensus 135 ~~g~~~~v~~~~g~~pd---tyn~LI~ay~k~G~~eeA~~vf~~M~ 177 (670)
+........ .....+. +|+.+=.+|.+.|++++|...|+...
T Consensus 83 ~~~~~~~~~-~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 83 HYFNRRGEL-NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHCCT-TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hcccccccc-cccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 531100000 0000001 56777889999999999999998754
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.64 E-value=1.3 Score=38.51 Aligned_cols=103 Identities=12% Similarity=-0.006 Sum_probs=75.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHc--------------CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCH
Q 005912 3 AEDCKAGDHSNALEIAYEMEAA--------------GRMA-TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT 67 (670)
Q Consensus 3 ~~y~k~G~~~~Al~lf~~M~~~--------------Gv~P-d~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~ 67 (670)
..+.+.|++..|+..|.+.... -+.| +...|+.+-.+|.+.|++++|...|++.. ... .-++
T Consensus 35 ~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al--~~~-p~~~ 111 (169)
T d1ihga1 35 NTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL--EID-PSNT 111 (169)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--TTC-TTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhh--hhh-hhhh
Confidence 3567889999999999776431 0112 34456667788999999999999999987 222 3467
Q ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHH
Q 005912 68 ETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN-VKTYALLVE 115 (670)
Q Consensus 68 ~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd-~~Ty~~LL~ 115 (670)
..|..+-.+|.+.| +.++|+..|....+ +.|+ ...+..+..
T Consensus 112 ~a~~~~g~~~~~l~---~~~~A~~~~~~al~----l~p~n~~~~~~l~~ 153 (169)
T d1ihga1 112 KALYRRAQGWQGLK---EYDQALADLKKAQE----IAPEDKAIQAELLK 153 (169)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HCTTCHHHHHHHHH
T ss_pred hHHHhHHHHHHHcc---CHHHHHHHHHHHHH----hCCCCHHHHHHHHH
Confidence 88999999999999 78899999999887 4554 344444433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=89.19 E-value=3.3 Score=35.77 Aligned_cols=96 Identities=10% Similarity=-0.044 Sum_probs=66.1
Q ss_pred HHHHHHHcCChHHHHHHHHHchh---CCCCCCC---------CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCC
Q 005912 36 LLSCQATCGIPEVAFATFENMEY---GEDYMKP---------DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL 103 (670)
Q Consensus 36 LI~~yak~G~~e~A~~lf~~M~~---~~~gi~P---------d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi 103 (670)
.=+.+.+.|++.+|...|..... ....+.+ ....|+-+-.+|.+.| +..+|+..+...... .
T Consensus 21 ~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~---~~~~Ai~~~~~al~l--~- 94 (168)
T d1kt1a1 21 KGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLR---EYTKAVECCDKALGL--D- 94 (168)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHH--C-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhh---hcccchhhhhhhhhc--c-
Confidence 33455566666666666655331 0111111 1244666777888888 788999999988762 1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcc
Q 005912 104 QPNVKTYALLVECFTKYCAVTEAIRHFRALQNYE 137 (670)
Q Consensus 104 ~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g 137 (670)
..+..+|..+-.+|...|++++|...|.......
T Consensus 95 p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~ 128 (168)
T d1kt1a1 95 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 128 (168)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3467888999999999999999999999988754
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=89.19 E-value=2.3 Score=36.25 Aligned_cols=101 Identities=12% Similarity=0.036 Sum_probs=70.8
Q ss_pred HHHHHH--HHHHHHcCChHHHHHHHHHchhCCCCCCC----------CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHh
Q 005912 31 FHFNHL--LSCQATCGIPEVAFATFENMEYGEDYMKP----------DTETYNCVIQAYTRAESYDRVQDVAELLGMMVE 98 (670)
Q Consensus 31 ~tyn~L--I~~yak~G~~e~A~~lf~~M~~~~~gi~P----------d~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~ 98 (670)
.+|+.| -..+.+.|++++|...|++-.. -..-.| ...+|+.+-.+|.+.| +.++|+..+.+...
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~-i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg---~~~~A~~~~~~al~ 83 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAME-ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLR---SFDEALHSADKALH 83 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hChhhhhhhhcccchhHHHHHHHHHHHHHHcC---ccchhhHhhhhhhh
Confidence 456666 4556678999999999988763 011112 2578999999999999 67777777776543
Q ss_pred c---cCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005912 99 D---HKRLQPN-----VKTYALLVECFTKYCAVTEAIRHFRALQN 135 (670)
Q Consensus 99 ~---~~gi~Pd-----~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~ 135 (670)
. .....++ ...|..+-.+|...|++++|...|....+
T Consensus 84 ~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 84 YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 0122332 22567778899999999999999988665
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=88.54 E-value=0.96 Score=39.50 Aligned_cols=98 Identities=11% Similarity=-0.044 Sum_probs=73.2
Q ss_pred HHHhcCChHHHHHHHHHHHHc---CCCCC-----------HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCCCHHH
Q 005912 4 EDCKAGDHSNALEIAYEMEAA---GRMAT-----------TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTET 69 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~---Gv~Pd-----------~~tyn~LI~~yak~G~~e~A~~lf~~M~~~~~gi~Pd~~t 69 (670)
.+.+.|++..|+..|.+-... ...++ ...|+-+-.+|.+.|++++|...++.... . -..+..+
T Consensus 24 ~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~--l-~p~~~~a 100 (168)
T d1kt1a1 24 VYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG--L-DSANEKG 100 (168)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H-CTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhh--c-ccchHHH
Confidence 477899999999999875531 11111 12345566678899999999999999773 1 1457888
Q ss_pred HHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHH
Q 005912 70 YNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYA 111 (670)
Q Consensus 70 yn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~ 111 (670)
|..+-.+|...| +.++|+..|.+... +.|+.....
T Consensus 101 ~~~~~~~~~~l~---~~~~A~~~~~~al~----l~P~n~~~~ 135 (168)
T d1kt1a1 101 LYRRGEAQLLMN---EFESAKGDFEKVLE----VNPQNKAAR 135 (168)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHH----SCTTCHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHH----hCCCCHHHH
Confidence 999999999999 88999999999987 567654433
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=86.70 E-value=1.5 Score=37.37 Aligned_cols=120 Identities=14% Similarity=0.059 Sum_probs=84.0
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----------cCChHHHHHHHHHchhCCCCCCC-CHHHHHH
Q 005912 4 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQAT----------CGIPEVAFATFENMEYGEDYMKP-DTETYNC 72 (670)
Q Consensus 4 ~y~k~G~~~~Al~lf~~M~~~Gv~Pd~~tyn~LI~~yak----------~G~~e~A~~lf~~M~~~~~gi~P-d~~tyn~ 72 (670)
.|-+.+.+++|+..|+...+.. +-+...++.+=.+|.. .+.+++|...|++... +.| +..+|+.
T Consensus 6 ~~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~----l~P~~~~a~~~ 80 (145)
T d1zu2a1 6 EFDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL----IDPKKDEAVWC 80 (145)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH----HCTTCHHHHHH
T ss_pred HHHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH----hcchhhHHHhh
Confidence 3567788999999999987752 3355566555555553 3456789999988773 234 5678888
Q ss_pred HHHHHHHcCCc--------ccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccC
Q 005912 73 VIQAYTRAESY--------DRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEG 138 (670)
Q Consensus 73 LI~ay~k~g~~--------~~~~eAl~lf~eM~~~~~gi~Pd~~Ty~~LL~a~ak~g~~d~A~~lf~~M~~~g~ 138 (670)
+=.+|...|.+ ....+|.+.|....+ +.|+..+|...|.-+ ..+.+++.+..+.|+
T Consensus 81 lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~----l~P~~~~~~~~L~~~------~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 81 IGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD----EQPDNTHYLKSLEMT------AKAPQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH----HCTTCHHHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred HHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc----cCCCHHHHHHHHHHH------HHHHHHHHHHHHHhc
Confidence 88888765521 135788899988876 679888887766655 466778887777654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=85.69 E-value=0.48 Score=45.42 Aligned_cols=119 Identities=13% Similarity=0.031 Sum_probs=77.1
Q ss_pred HHcCChHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHH-HHHHHHHHHH
Q 005912 41 ATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT-YALLVECFTK 119 (670)
Q Consensus 41 ak~G~~e~A~~lf~~M~~~~~gi~Pd~~tyn~LI~ay~k~g~~~~~~eAl~lf~eM~~~~~gi~Pd~~T-y~~LL~a~ak 119 (670)
.+.|++++|...|++-.. --.-|...+..+...|+..| +.++|...|+...+ +.|+... +..+-..+.
T Consensus 7 L~~G~l~eAl~~l~~al~---~~P~d~~ar~~La~lL~~~G---~~e~A~~~l~~a~~----l~P~~~~~~~~l~~ll~- 75 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIK---ASPKDASLRSSFIELLCIDG---DFERADEQLMQSIK----LFPEYLPGASQLRHLVK- 75 (264)
T ss_dssp TTTTCHHHHHHHHHHHHH---TCTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHH----HCGGGHHHHHHHHHHHH-
T ss_pred HHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHH-
Confidence 457999999999999763 11457899999999999999 88899999999876 4565433 332222222
Q ss_pred cCCHHHHHHHHHHHHHccCCCcccccCCCCch---HHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 005912 120 YCAVTEAIRHFRALQNYEGGTKVLHNEGNFGD---PLSLYLRALCREGRIIELLEALEAMAKDN 180 (670)
Q Consensus 120 ~g~~d~A~~lf~~M~~~g~~~~v~~~~g~~pd---tyn~LI~ay~k~G~~eeA~~vf~~M~~~g 180 (670)
+.....++......+.+. + .|+ .+......+.+.|+.++|..++....+..
T Consensus 76 ------a~~~~~~a~~~~~~~~~~---~-~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 76 ------AAQARKDFAQGAATAKVL---G-ENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp ------HHHHHHHHTTSCCCEECC---C-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred ------hccccHHHHHHhhhhhcc---c-CchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 222233332211111111 1 122 34445566788999999999999886653
|