Citrus Sinensis ID: 005965

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------

MASVHATTTSIVCKNGIHSTPAKLPSTSFLPGFDVVACKKEICSSMSSGISAALTFDPPTANSKNTGQRKHTADPASPDFLPLPSFEQCFPKSSKEYREITHEESGHILQVPFRRIHLSGDEPNFDTYDTSGPQNISPRVGLPKLRKDWIDRREKLGAPRYTQMYYAKQGVITEEMLYCATREKLDPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTALLCYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKGHPLAQTWDDALSKARFEFRWMDQFALSLDPMTAMSFHDETLPSEGAKVAHFCSMCGPKFCSMKITEDVRKYAEEHGYGSAEEALQQGMDAMSAEFLAAKKTVSGEQHGEVGGEIYLPESYISSSQNSRSMLSYFPFVNDKVKGITSKRAQK

cccccccHHHHHHcccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccEEEEcccccccccccccccccccccccccccccHHHHHHHHHcccccccHHHHHHcccccHHHHHHHHHccccHHHHHHHHHcccEEEcccccccccccEEEcccccEEEEEccccccccccHHHHHHHHHHHHHHcccEEEEccccccHHHHHHHHHHcccccccccHHHHHHHHHccccccccHHHHHHHHHHHHHccccEEEEccccccccHHHHHcccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHcEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHcccEEEEEcccccccccHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHcccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHcccHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccccccEEcccccccccccccccccccccccccccccccHHHHcc

cccEEccEEEEEEccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccEEcEEEEEEccccccEEEEEccccccEcHHcccHHHHHHHHHHHcccccccHHHHHHHHcccccHHHHHHEHHccccHHHHHHHHHcccEEEEccccccccccEEEEccEEEEEEEccccccccccHHHHHHHHHHHHHcccccEEEcccccccHHHHHHHHHccccccccHHHHHHHHHHcccHHHccHHHHHHHHHHHHHccccEEEEEHHEEEEEccccHHHcccEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccHHHHHHHHHHHHHHHcccccEccccccccccccccHHHHHHHHHHHHHHHHHHEHEcccHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccEEEEEEHHHccccccHHHHHHHHcccccHccccEEEEcccccccccccHHcHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccEEEccccccccEEEEcHHHHHHHccccccccccccccccccccccHHccc

masvhatttsivckngihstpaklpstsflpgfdvVACKKEICSSMssgisaaltfdpptanskntgqrkhtadpaspdflplpsfeqcfpksskEYREITheesghilqvpfrrihlsgdepnfdtydtsgpqnisprvglpklRKDWIDRReklgaprytqMYYAKQGVITEEMLYCATREKLDPEFVRAEVArgraiipsnkkhlelepmivgRNFLVKVNANIGNSAVASSIEEEVYKVQWATMWGAdtvmdlstgrhihETREWIlrnsavpvgtvpiYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYhkenfayeHWDEILDICNQYDValsigdglrpgsiydandTAQFAELLTQGELTRRAWDKDvqvmnegpghipmhkipeNMQKQLewcneapfytlgplttdiapgydhitsaigaANIGALGTALLCyvtpkehlglpnrddvKAGVIAYKIAAHAAdlakghplaQTWDDALSKARFEFRWMdqfalsldpmtamsfhdetlpsegakvahfcsmcgpkfcsmkiTEDVRKYAEEHGYGSAEEALQQGMDAMSAEFLAAKKtvsgeqhgevggeiylpesyisssqnsrsmlsyfpfvndkvkgitskraqk

masvhatttsivckngihstpaklpstsFLPGFDVVACKKEICSSMSSGISAALTFDPPTANSKNTGQRKHTAdpaspdflplpSFEQCFPKSSKEYREITHeesghilqvpFRRIHLSGDEPNFdtydtsgpqnisprvglpklrkdWIDRreklgaprytqmYYAKQGVITEEMLYCATREKLDPEFVRAEVargraiipsnkkhlelepMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWATMWGADTVMDLSTGRHIHETRewilrnsavpVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTALLCYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKGHPLAQTWDDALSKARFEFRWMDQFALSLDPMTAMSFHDETLPSEGAKVAHFCSMCGPKFCSMKITEDVRKYAEEHGYGSAEEALQQGMDAMSAEFLAAKKTVSGEQHGEVGGEIYLPESYISSSQNSRSMLSYfpfvndkvkgitskraqk

*********SIVCKNGIHSTPAKLPSTSFLPGFDVVACKKEICSS*************************************************************HILQVPFRRIHL**********************GLPKLRKDWIDRREKLGAPRYTQMYYAKQGVITEEMLYCATREKLDPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTALLCYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKGHPLAQTWDDALSKARFEFRWMDQFALSLDPMTAMSFHDETLPSEGAKVAHFCSMCGPKFCSMKITEDVRKYA****************************************EIYL**************LSYFPFVN*************

***********VC****************************************************************************FPKSSKEYREITHEESGHILQVPFRRIHLSGDEPNFDTYDTSGPQNISPRVGLPKLRKDWIDRREKLGAPRYTQMYYAKQGVITEEMLYCATREKLDPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTALLCYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKGHPLAQTWDDALSKARFEFRWMDQFALSLDPMTAMSFHD*******AKVAHFCSMCGPKFCSMKITEDVR**********************************************************************************

*********SIVCKNGIHSTPAKLPSTSFLPGFDVVACKKEICSSMSSGISAALTFDPPTAN************PASPDFLPLPSFEQCFPKSSKEYREITHEESGHILQVPFRRIHLSGDEPNFDTYDTSGPQNISPRVGLPKLRKDWIDRREKLGAPRYTQMYYAKQGVITEEMLYCATREKLDPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTALLCYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKGHPLAQTWDDALSKARFEFRWMDQFALSLDPMTAMSFHDETLPSEGAKVAHFCSMCGPKFCSMKITEDVRKYAEEHGYGSAEEALQQGMDAMSAEFLAAKKTVSGEQHGEVGGEIYLPESYISSSQNSRSMLSYFPFVNDKVKG********

**SVHATTTSIVCKNG************FLPGFDVVACK***************************************DFLPLPSFEQCFPKSSKEYREITHEESGHILQVPFRRIHLSGDEPNFDTYDTSGPQNISPRVGLPKLRKDWIDRREKLGAPRYTQMYYAKQGVITEEMLYCATREKLDPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTALLCYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKGHPLAQTWDDALSKARFEFRWMDQFALSLDPMTAMSFHDETLPSEGAKVAHFCSMCGPKFCSMKITEDVRKYAEEHGYGSAEEALQQGMDAMSAEFLAAKKTVSGEQHGEVGGEIYLPESYISSSQNSRSMLSYFPFVNDKVKGIT******

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		667	2.2.26 [Sep-21-2011]
O82392		644	Phosphomethylpyrimidine s	yes	no	0.952	0.986	0.863	0.0
Q9KBJ4		595	Phosphomethylpyrimidine s	yes	no	0.787	0.882	0.639	0.0
A7GUZ5		586	Phosphomethylpyrimidine s	yes	no	0.784	0.892	0.645	0.0
A4VR38		627	Phosphomethylpyrimidine s	yes	no	0.779	0.829	0.616	0.0
A6VD86		627	Phosphomethylpyrimidine s	yes	no	0.778	0.827	0.618	0.0
Q9HUJ2		627	Phosphomethylpyrimidine s	yes	no	0.778	0.827	0.617	0.0
B7V362		627	Phosphomethylpyrimidine s	yes	no	0.778	0.827	0.617	0.0
Q02F45		627	Phosphomethylpyrimidine s	yes	no	0.778	0.827	0.617	0.0
A4XPW1		627	Phosphomethylpyrimidine s	yes	no	0.782	0.832	0.612	0.0
Q2G7A9		626	Phosphomethylpyrimidine s	yes	no	0.776	0.827	0.620	0.0

>sp\|O82392\|THIC_ARATH Phosphomethylpyrimidine synthase, chloroplastic OS=Arabidopsis thaliana GN=THIC PE=1 SV=1	Back alignment and function desciption

 Score = 1180 bits (3052), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 558/646 (86%), Positives = 597/646 (92%), Gaps = 11/646 (1%)

Query: 2   ASVHATTTSIVCKNGIHSTPAKLPSTSFLPGFDVVA------CKKEICSSMSSGISAALT 55
           ASVH T  S+VC N  HS   KLP++S LPGFDVV        KKE     ++   A LT
Sbjct: 3   ASVHCTLMSVVCNNKNHSARPKLPNSSLLPGFDVVVQAAATRFKKE-----TTTTRATLT 57

Query: 56  FDPPTANSKNTGQRKHTADPASPDFLPLPSFEQCFPKSSKEYREITHEESGHILQVPFRR 115
           FDPPT NS+   QRKHT DP+SPDF P+PSFE+CFPKS+KE++E+ HEESGH+L+VPFRR
Sbjct: 58  FDPPTTNSERAKQRKHTIDPSSPDFQPIPSFEECFPKSTKEHKEVVHEESGHVLKVPFRR 117

Query: 116 IHLSGDEPNFDTYDTSGPQNISPRVGLPKLRKDWIDRREKLGAPRYTQMYYAKQGVITEE 175
           +HLSG EP FD YDTSGPQN++  +GL KLRK+WIDRREKLG PRYTQMYYAKQG+ITEE
Sbjct: 118 VHLSGGEPAFDNYDTSGPQNVNAHIGLAKLRKEWIDRREKLGTPRYTQMYYAKQGIITEE 177

Query: 176 MLYCATREKLDPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASS 235
           MLYCATREKLDPEFVR+EVARGRAIIPSNKKHLELEPMIVGR FLVKVNANIGNSAVASS
Sbjct: 178 MLYCATREKLDPEFVRSEVARGRAIIPSNKKHLELEPMIVGRKFLVKVNANIGNSAVASS 237

Query: 236 IEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAE 295
           IEEEVYKVQWATMWGADT+MDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAE
Sbjct: 238 IEEEVYKVQWATMWGADTIMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAE 297

Query: 296 NLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHK 355
           NL+WEVFR+TLIEQAEQGVDYFTIHAGVLLRYIPLTAKR+TGIVSRGGSIHAKWCLAYHK
Sbjct: 298 NLNWEVFRETLIEQAEQGVDYFTIHAGVLLRYIPLTAKRLTGIVSRGGSIHAKWCLAYHK 357

Query: 356 ENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDV 415
           ENFAYEHWD+ILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAW+KDV
Sbjct: 358 ENFAYEHWDDILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWEKDV 417

Query: 416 QVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGAL 475
           QVMNEGPGH+PMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGAL
Sbjct: 418 QVMNEGPGHVPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGAL 477

Query: 476 GTALLCYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKGHPLAQTWDDALSKARFEFR 535
           GTALLCYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAK HP AQ WDDALSKARFEFR
Sbjct: 478 GTALLCYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKQHPHAQAWDDALSKARFEFR 537

Query: 536 WMDQFALSLDPMTAMSFHDETLPSEGAKVAHFCSMCGPKFCSMKITEDVRKYAEEHGYGS 595
           WMDQFALSLDPMTAMSFHDETLP++GAKVAHFCSMCGPKFCSMKITED+RKYAEE+GYGS
Sbjct: 538 WMDQFALSLDPMTAMSFHDETLPADGAKVAHFCSMCGPKFCSMKITEDIRKYAEENGYGS 597

Query: 596 AEEALQQGMDAMSAEFLAAKKTVSGEQHGEVGGEIYLPESYISSSQ 641
           AEEA++QGMDAMS EF  AKKT+SGEQHGEVGGEIYLPESY+ ++Q
Sbjct: 598 AEEAIRQGMDAMSEEFNIAKKTISGEQHGEVGGEIYLPESYVKAAQ 643

Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction.
Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 1EC: .EC: 9EC: 9EC: .EC: 1EC: 7

>sp\|Q9KBJ4\|THIC_BACHD Phosphomethylpyrimidine synthase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=thiC PE=3 SV=1	Back alignment and function description

>sp\|A7GUZ5\|THIC_BACCN Phosphomethylpyrimidine synthase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=thiC PE=3 SV=1	Back alignment and function description

>sp\|A4VR38\|THIC_PSEU5 Phosphomethylpyrimidine synthase OS=Pseudomonas stutzeri (strain A1501) GN=thiC PE=3 SV=1	Back alignment and function description

>sp\|A6VD86\|THIC_PSEA7 Phosphomethylpyrimidine synthase OS=Pseudomonas aeruginosa (strain PA7) GN=thiC PE=3 SV=1	Back alignment and function description

>sp\|Q9HUJ2\|THIC_PSEAE Phosphomethylpyrimidine synthase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=thiC PE=3 SV=1	Back alignment and function description

>sp\|B7V362\|THIC_PSEA8 Phosphomethylpyrimidine synthase OS=Pseudomonas aeruginosa (strain LESB58) GN=thiC PE=3 SV=1	Back alignment and function description

>sp\|Q02F45\|THIC_PSEAB Phosphomethylpyrimidine synthase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=thiC PE=3 SV=1	Back alignment and function description

>sp\|A4XPW1\|THIC_PSEMY Phosphomethylpyrimidine synthase OS=Pseudomonas mendocina (strain ymp) GN=thiC PE=3 SV=1	Back alignment and function description

>sp\|Q2G7A9\|THIC_NOVAD Phosphomethylpyrimidine synthase OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=thiC PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		667
225434668		640	PREDICTED: phosphomethylpyrimidine synth	0.952	0.992	0.896	0.0
356566163		647	PREDICTED: phosphomethylpyrimidine synth	0.959	0.989	0.879	0.0
449465814		649	PREDICTED: phosphomethylpyrimidine synth	0.961	0.987	0.875	0.0
118489266		637	unknown [Populus trichocarpa x Populus d	0.944	0.989	0.888	0.0
255569269		643	catalytic, putative [Ricinus communis] g	0.946	0.981	0.878	0.0
395146505		952	ThiC family protein [Linum usitatissimum	0.941	0.659	0.874	0.0
312282721		644	unnamed protein product [Thellungiella h	0.952	0.986	0.859	0.0
297822681		645	thiamine biosynthesis family protein [Ar	0.959	0.992	0.866	0.0
356539595		648	PREDICTED: phosphomethylpyrimidine synth	0.962	0.990	0.858	0.0
224106303		593	predicted protein [Populus trichocarpa]	0.887	0.998	0.927	0.0

>gi\|225434668\|ref\|XP_002280227.1\| PREDICTED: phosphomethylpyrimidine synthase [Vitis vinifera] gi\|297745941\|emb\|CBI15997.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1209 bits (3128), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 572/638 (89%), Positives = 600/638 (94%), Gaps = 3/638 (0%)

Query: 1   MASVHATTTSIVCKNGIHSTPAKLPSTSFLPGFDVVA--CKKEIC-SSMSSGISAALTFD 57
           MASVH T TS++CKNG HS PAK P T+FLPGFD V    KK +C + MSSG  A LT D
Sbjct: 1   MASVHTTLTSLLCKNGNHSAPAKFPGTAFLPGFDGVGRVSKKGLCLTFMSSGPRATLTSD 60

Query: 58  PPTANSKNTGQRKHTADPASPDFLPLPSFEQCFPKSSKEYREITHEESGHILQVPFRRIH 117
           PP  NS+ T QRK T DP++PDF P P+FEQCFP+SSKEYRE+ HE SGH+L+VPFRRIH
Sbjct: 61  PPKTNSEKTKQRKGTVDPSAPDFEPHPTFEQCFPRSSKEYREVIHEPSGHVLKVPFRRIH 120

Query: 118 LSGDEPNFDTYDTSGPQNISPRVGLPKLRKDWIDRREKLGAPRYTQMYYAKQGVITEEML 177
           LSGDEPNFDTYDTSGPQ+ISPR GLPKLRK+WIDRREKLG PRYTQMYYAKQG+ITEEML
Sbjct: 121 LSGDEPNFDTYDTSGPQDISPRAGLPKLRKEWIDRREKLGGPRYTQMYYAKQGIITEEML 180

Query: 178 YCATREKLDPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIE 237
           +CA REKL+PEFVR+EVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIE
Sbjct: 181 FCAAREKLEPEFVRSEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIE 240

Query: 238 EEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENL 297
           EEVYKVQWAT WGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKV+GIAE+L
Sbjct: 241 EEVYKVQWATTWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVNGIAEDL 300

Query: 298 SWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKEN 357
           +WEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTA RMTGIVSRGGSIHAKWCLAYHKEN
Sbjct: 301 TWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTANRMTGIVSRGGSIHAKWCLAYHKEN 360

Query: 358 FAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQV 417
           FAYEHWDEILDICNQYD++LSIGDGLRPGSIYDAND AQFAELLTQGELTRRAW+KDVQV
Sbjct: 361 FAYEHWDEILDICNQYDISLSIGDGLRPGSIYDANDPAQFAELLTQGELTRRAWEKDVQV 420

Query: 418 MNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGT 477
           MNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGT
Sbjct: 421 MNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGT 480

Query: 478 ALLCYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKGHPLAQTWDDALSKARFEFRWM 537
           ALLCYVTPKEHLGLPNRDDVK GVIAYKIAAHAADLAKGHP AQ WDDALSKARFEFRWM
Sbjct: 481 ALLCYVTPKEHLGLPNRDDVKTGVIAYKIAAHAADLAKGHPHAQAWDDALSKARFEFRWM 540

Query: 538 DQFALSLDPMTAMSFHDETLPSEGAKVAHFCSMCGPKFCSMKITEDVRKYAEEHGYGSAE 597
           DQFALSLDPMTAMSFHDETLPSEGAKVAHFCSMCGPKFCSMKITEDVRKYAEEHGYGSAE
Sbjct: 541 DQFALSLDPMTAMSFHDETLPSEGAKVAHFCSMCGPKFCSMKITEDVRKYAEEHGYGSAE 600

Query: 598 EALQQGMDAMSAEFLAAKKTVSGEQHGEVGGEIYLPES 635
           EA+QQGMDAMSAEFLAAKKTVSGEQ+GE+GGEIYLP S
Sbjct: 601 EAVQQGMDAMSAEFLAAKKTVSGEQYGEIGGEIYLPTS 638

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356566163\|ref\|XP_003551304.1\| PREDICTED: phosphomethylpyrimidine synthase-like [Glycine max]	Back alignment and taxonomy information

>gi\|449465814\|ref\|XP_004150622.1\| PREDICTED: phosphomethylpyrimidine synthase, chloroplastic-like [Cucumis sativus] gi\|449515103\|ref\|XP_004164589.1\| PREDICTED: phosphomethylpyrimidine synthase, chloroplastic-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|118489266\|gb\|ABK96438.1\| unknown [Populus trichocarpa x Populus deltoides]	Back alignment and taxonomy information

>gi\|255569269\|ref\|XP_002525602.1\| catalytic, putative [Ricinus communis] gi\|223535038\|gb\|EEF36720.1\| catalytic, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|395146505\|gb\|AFN53660.1\| ThiC family protein [Linum usitatissimum]	Back alignment and taxonomy information

>gi\|312282721\|dbj\|BAJ34226.1\| unnamed protein product [Thellungiella halophila]	Back alignment and taxonomy information

>gi\|297822681\|ref\|XP_002879223.1\| thiamine biosynthesis family protein [Arabidopsis lyrata subsp. lyrata] gi\|297325062\|gb\|EFH55482.1\| thiamine biosynthesis family protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|356539595\|ref\|XP_003538282.1\| PREDICTED: phosphomethylpyrimidine synthase-like [Glycine max]	Back alignment and taxonomy information

>gi\|224106303\|ref\|XP_002314121.1\| predicted protein [Populus trichocarpa] gi\|222850529\|gb\|EEE88076.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		667
TAIR\|locus:2060604		644	THIC "AT2G29630" [Arabidopsis	0.959	0.993	0.865	3.50000000002e-313
TIGR_CMR\|BA_5463		586	BA_5463 "thiamine biosynthesis	0.685	0.779	0.734	5.1e-188
UNIPROTKB\|P30136		631	thiC "thiamin biosynthesis pro	0.635	0.671	0.742	2.9e-183
UNIPROTKB\|Q9KVS8		645	thiC "Phosphomethylpyrimidine	0.644	0.666	0.739	6.1e-183
TIGR_CMR\|VC_0061		645	VC_0061 "thiamin biosynthesis	0.644	0.666	0.739	6.1e-183
UNIPROTKB\|P66911		547	thiC "Phosphomethylpyrimidine	0.790	0.963	0.664	9.7e-183
TIGR_CMR\|CPS_0250		658	CPS_0250 "thiamine biosynthesi	0.673	0.682	0.704	5.5e-182
TIGR_CMR\|SO_2445		721	SO_2445 "thiamin biosynthesis	0.659	0.610	0.714	2.3e-181
TIGR_CMR\|ECH_0798		554	ECH_0798 "thiamin biosynthesis	0.608	0.732	0.697	2.2e-168
TIGR_CMR\|CBU_0330		554	CBU_0330 "thiamine biosynthesi	0.601	0.723	0.718	2.7e-167

TAIR\|locus:2060604 THIC "AT2G29630" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3004 (1062.5 bits), Expect = 3.5e-313, P = 3.5e-313
 Identities = 555/641 (86%), Positives = 594/641 (92%)

Query:     2 ASVHATTTSIVCKNGIHSTPAKLPSTSFLPGFDVVA-CKKEICSSMSSGISAALTFDPPT 60
             ASVH T  S+VC N  HS   KLP++S LPGFDVV           ++   A LTFDPPT
Sbjct:     3 ASVHCTLMSVVCNNKNHSARPKLPNSSLLPGFDVVVQAAATRFKKETTTTRATLTFDPPT 62

Query:    61 ANSKNTGQRKHTADPASPDFLPLPSFEQCFPKSSKEYREITHEESGHILQVPFRRIHLSG 120
              NS+   QRKHT DP+SPDF P+PSFE+CFPKS+KE++E+ HEESGH+L+VPFRR+HLSG
Sbjct:    63 TNSERAKQRKHTIDPSSPDFQPIPSFEECFPKSTKEHKEVVHEESGHVLKVPFRRVHLSG 122

Query:   121 DEPNFDTYDTSGPQNISPRVGLPKLRKDWIDRREKLGAPRYTQMYYAKQGVITEEMLYCA 180
              EP FD YDTSGPQN++  +GL KLRK+WIDRREKLG PRYTQMYYAKQG+ITEEMLYCA
Sbjct:   123 GEPAFDNYDTSGPQNVNAHIGLAKLRKEWIDRREKLGTPRYTQMYYAKQGIITEEMLYCA 182

Query:   181 TREKLDPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEV 240
             TREKLDPEFVR+EVARGRAIIPSNKKHLELEPMIVGR FLVKVNANIGNSAVASSIEEEV
Sbjct:   183 TREKLDPEFVRSEVARGRAIIPSNKKHLELEPMIVGRKFLVKVNANIGNSAVASSIEEEV 242

Query:   241 YKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWE 300
             YKVQWATMWGADT+MDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENL+WE
Sbjct:   243 YKVQWATMWGADTIMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLNWE 302

Query:   301 VFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAY 360
             VFR+TLIEQAEQGVDYFTIHAGVLLRYIPLTAKR+TGIVSRGGSIHAKWCLAYHKENFAY
Sbjct:   303 VFRETLIEQAEQGVDYFTIHAGVLLRYIPLTAKRLTGIVSRGGSIHAKWCLAYHKENFAY 362

Query:   361 EHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNE 420
             EHWD+ILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAW+KDVQVMNE
Sbjct:   363 EHWDDILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWEKDVQVMNE 422

Query:   421 GPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTALL 480
             GPGH+PMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTALL
Sbjct:   423 GPGHVPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTALL 482

Query:   481 CYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKGHPLAQTWDDALSKARFEFRWMDQF 540
             CYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAK HP AQ WDDALSKARFEFRWMDQF
Sbjct:   483 CYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKQHPHAQAWDDALSKARFEFRWMDQF 542

Query:   541 ALSLDPMTAMSFHDETLPSEGAKVAHFCSMCGPKFCSMKITEDVRKYAEEHGYGSAEEAL 600
             ALSLDPMTAMSFHDETLP++GAKVAHFCSMCGPKFCSMKITED+RKYAEE+GYGSAEEA+
Sbjct:   543 ALSLDPMTAMSFHDETLPADGAKVAHFCSMCGPKFCSMKITEDIRKYAEENGYGSAEEAI 602

Query:   601 QQGMDAMSAEFLAAKKTVSGEQHGEVGGEIYLPESYISSSQ 641
             +QGMDAMS EF  AKKT+SGEQHGEVGGEIYLPESY+ ++Q
Sbjct:   603 RQGMDAMSEEFNIAKKTISGEQHGEVGGEIYLPESYVKAAQ 643

GO:0003824 "catalytic activity" evidence=ISS

GO:0009228 "thiamine biosynthetic process" evidence=IEA;ISS;IMP

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0010266 "response to vitamin B1" evidence=IEP

GO:0051536 "iron-sulfur cluster binding" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0080041 "ADP-ribose pyrophosphohydrolase activity" evidence=IGI

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019760 "glucosinolate metabolic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

TIGR_CMR\|BA_5463 BA_5463 "thiamine biosynthesis protein ThiC" [Bacillus anthracis str. Ames (taxid:198094)]	Back alignment and assigned GO terms

UNIPROTKB\|P30136 thiC "thiamin biosynthesis protein ThiC" [Escherichia coli K-12 (taxid:83333)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9KVS8 thiC "Phosphomethylpyrimidine synthase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]	Back alignment and assigned GO terms

TIGR_CMR\|VC_0061 VC_0061 "thiamin biosynthesis protein ThiC" [Vibrio cholerae O1 biovar El Tor (taxid:686)]	Back alignment and assigned GO terms

UNIPROTKB\|P66911 thiC "Phosphomethylpyrimidine synthase" [Mycobacterium tuberculosis (taxid:1773)]	Back alignment and assigned GO terms

TIGR_CMR\|CPS_0250 CPS_0250 "thiamine biosynthesis protein ThiC" [Colwellia psychrerythraea 34H (taxid:167879)]	Back alignment and assigned GO terms

TIGR_CMR\|SO_2445 SO_2445 "thiamin biosynthesis protein ThiC" [Shewanella oneidensis MR-1 (taxid:211586)]	Back alignment and assigned GO terms

TIGR_CMR\|ECH_0798 ECH_0798 "thiamin biosynthesis protein ThiC" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]	Back alignment and assigned GO terms

TIGR_CMR\|CBU_0330 CBU_0330 "thiamine biosynthesis protein ThiC" [Coxiella burnetii RSA 493 (taxid:227377)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A9N0K6	THIC_SALPB	4, ., 1, ., 9, 9, ., 1, 7	0.6009	0.7811	0.8256	yes	no
Q9KBJ4	THIC_BACHD	4, ., 1, ., 9, 9, ., 1, 7	0.6397	0.7871	0.8823	yes	no
Q57H61	THIC_SALCH	4, ., 1, ., 9, 9, ., 1, 7	0.6003	0.7796	0.8240	yes	no
B5QYE9	THIC_SALEP	4, ., 1, ., 9, 9, ., 1, 7	0.6003	0.7796	0.8240	yes	no
B7JGF0	THIC_BACC0	4, ., 1, ., 9, 9, ., 1, 7	0.6328	0.7796	0.8873	yes	no
A4XPW1	THIC_PSEMY	4, ., 1, ., 9, 9, ., 1, 7	0.6129	0.7826	0.8325	yes	no
Q815D5	THIC_BACCR	4, ., 1, ., 9, 9, ., 1, 7	0.6295	0.7841	0.8924	yes	no
B0VMD7	THIC_ACIBS	4, ., 1, ., 9, 9, ., 1, 7	0.6199	0.7706	0.8224	yes	no
B5F1H7	THIC_SALA4	4, ., 1, ., 9, 9, ., 1, 7	0.5993	0.7811	0.8256	yes	no
P45740	THIC_BACSU	4, ., 1, ., 9, 9, ., 1, 7	0.6302	0.7841	0.8864	yes	no
Q04VF1	THIC_LEPBJ	4, ., 1, ., 9, 9, ., 1, 7	0.688	0.7421	0.9686	yes	no
Q6HB59	THIC_BACHK	4, ., 1, ., 9, 9, ., 1, 7	0.6328	0.7796	0.8873	yes	no
B1JAG3	THIC_PSEPW	4, ., 1, ., 9, 9, ., 1, 7	0.6083	0.7796	0.8280	yes	no
Q9L9I7	THIC_SALTY	4, ., 1, ., 9, 9, ., 1, 7	0.5977	0.7811	0.8256	yes	no
A6TGQ1	THIC_KLEP7	4, ., 1, ., 9, 9, ., 1, 7	0.5984	0.7826	0.8272	yes	no
A6VD86	THIC_PSEA7	4, ., 1, ., 9, 9, ., 1, 7	0.6189	0.7781	0.8277	yes	no
C1EZL5	THIC_BACC3	4, ., 1, ., 9, 9, ., 1, 7	0.6328	0.7796	0.8873	yes	no
B7V362	THIC_PSEA8	4, ., 1, ., 9, 9, ., 1, 7	0.6173	0.7781	0.8277	yes	no
Q65M65	THIC_BACLD	4, ., 1, ., 9, 9, ., 1, 7	0.6333	0.7796	0.8798	yes	no
Q2G7A9	THIC_NOVAD	4, ., 1, ., 9, 9, ., 1, 7	0.6200	0.7766	0.8274	yes	no
A7GUZ5	THIC_BACCN	4, ., 1, ., 9, 9, ., 1, 7	0.6452	0.7841	0.8924	yes	no
B5FQK9	THIC_SALDC	4, ., 1, ., 9, 9, ., 1, 7	0.6009	0.7811	0.8256	yes	no
B7HX62	THIC_BACC7	4, ., 1, ., 9, 9, ., 1, 7	0.6311	0.7796	0.8873	yes	no
B4TQK4	THIC_SALSV	4, ., 1, ., 9, 9, ., 1, 7	0.5993	0.7811	0.8256	yes	no
B7IPY9	THIC_BACC2	4, ., 1, ., 9, 9, ., 1, 7	0.6295	0.7841	0.8924	yes	no
B5BJR3	THIC_SALPK	4, ., 1, ., 9, 9, ., 1, 7	0.5993	0.7811	0.8256	yes	no
C3LEJ7	THIC_BACAC	4, ., 1, ., 9, 9, ., 1, 7	0.6311	0.7796	0.8873	yes	no
Q81WY7	THIC_BACAN	4, ., 1, ., 9, 9, ., 1, 7	0.6311	0.7796	0.8873	yes	no
Q02F45	THIC_PSEAB	4, ., 1, ., 9, 9, ., 1, 7	0.6173	0.7781	0.8277	yes	no
Q5PKA6	THIC_SALPA	4, ., 1, ., 9, 9, ., 1, 7	0.5993	0.7811	0.8256	yes	no
B2I1W2	THIC_ACIBC	4, ., 1, ., 9, 9, ., 1, 7	0.6199	0.7706	0.8224	yes	no
Q603T9	THIC_METCA	4, ., 1, ., 9, 9, ., 1, 7	0.6198	0.7886	0.8429	yes	no
A4VR38	THIC_PSEU5	4, ., 1, ., 9, 9, ., 1, 7	0.6166	0.7796	0.8293	yes	no
C5BTK7	THIC_TERTT	4, ., 1, ., 9, 9, ., 1, 7	0.6164	0.7646	0.7981	yes	no
B7HEM8	THIC_BACC4	4, ., 1, ., 9, 9, ., 1, 7	0.6295	0.7841	0.8924	yes	no
Q631C7	THIC_BACCZ	4, ., 1, ., 9, 9, ., 1, 7	0.6328	0.7796	0.8873	yes	no
A3M1D2	THIC_ACIBT	4, ., 1, ., 9, 9, ., 1, 7	0.6199	0.7706	0.8224	yes	no
B4T0Z6	THIC_SALNS	4, ., 1, ., 9, 9, ., 1, 7	0.5977	0.7811	0.8256	yes	no
Q9HUJ2	THIC_PSEAE	4, ., 1, ., 9, 9, ., 1, 7	0.6173	0.7781	0.8277	yes	no
Q04Y23	THIC_LEPBL	4, ., 1, ., 9, 9, ., 1, 7	0.688	0.7421	0.9686	yes	no
A7Z2P5	THIC_BACA2	4, ., 1, ., 9, 9, ., 1, 7	0.64	0.7826	0.8847	yes	no
B4TCT3	THIC_SALHS	4, ., 1, ., 9, 9, ., 1, 7	0.5977	0.7811	0.8256	yes	no
C0Q2S6	THIC_SALPC	4, ., 1, ., 9, 9, ., 1, 7	0.6003	0.7796	0.8240	yes	no
C3P178	THIC_BACAA	4, ., 1, ., 9, 9, ., 1, 7	0.6311	0.7796	0.8873	yes	no
B0VDF1	THIC_ACIBY	4, ., 1, ., 9, 9, ., 1, 7	0.6199	0.7706	0.8224	yes	no
B3PCK0	THIC_CELJU	4, ., 1, ., 9, 9, ., 1, 7	0.5971	0.8005	0.8396	yes	no
A9VR68	THIC_BACWK	4, ., 1, ., 9, 9, ., 1, 7	0.6311	0.7796	0.8873	yes	no
O82392	THIC_ARATH	4, ., 1, ., 9, 9, ., 1, 7	0.8637	0.9520	0.9860	yes	no
B9J5N4	THIC_BACCQ	4, ., 1, ., 9, 9, ., 1, 7	0.6311	0.7796	0.8873	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.5.1.3	0.824
3rd Layer	2.5.1	0.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		667
PLN02444		642	PLN02444, PLN02444, HMP-P synthase	0.0
PRK09284		607	PRK09284, PRK09284, thiamine biosynthesis protein	0.0
pfam01964		421	pfam01964, ThiC, ThiC family	0.0
COG0422		432	COG0422, ThiC, Thiamine biosynthesis protein ThiC	0.0
TIGR00190		423	TIGR00190, thiC, thiamine biosynthesis protein Thi	0.0
PRK13352		431	PRK13352, PRK13352, thiamine biosynthesis protein	0.0
pfam13667		80	pfam13667, ThiC-associated, ThiC-associated domain	4e-14

>gnl\|CDD\|215243 PLN02444, PLN02444, HMP-P synthase	Back alignment and domain information

 Score = 1310 bits (3392), Expect = 0.0
 Identities = 561/641 (87%), Positives = 597/641 (93%), Gaps = 6/641 (0%)

Query: 7   TTTSIVCKNGIHSTPAKLPSTSFLPGFDVVACKKEICSS------MSSGISAALTFDPPT 60
           T  S+VC N   S P KLP++S LPGFDVV   + +  S       S+   A LTFDPPT
Sbjct: 1   TLLSVVCNNANSSAPLKLPNSSLLPGFDVVVRAQALAVSAARLKKESTATRATLTFDPPT 60

Query: 61  ANSKNTGQRKHTADPASPDFLPLPSFEQCFPKSSKEYREITHEESGHILQVPFRRIHLSG 120
            NS+   Q K T DP++PDFLP+PSFE+CFPKS+KEY+E+ HEESGH+L+VPFRR+HLSG
Sbjct: 61  GNSEKAKQTKPTVDPSAPDFLPIPSFEECFPKSTKEYKEVVHEESGHVLKVPFRRVHLSG 120

Query: 121 DEPNFDTYDTSGPQNISPRVGLPKLRKDWIDRREKLGAPRYTQMYYAKQGVITEEMLYCA 180
           DEP+FD YDTSGPQNI PR+GLPKLRK+WIDRREKLG PRYTQMYYAKQG+ITEEMLYCA
Sbjct: 121 DEPHFDNYDTSGPQNIDPRIGLPKLRKEWIDRREKLGTPRYTQMYYAKQGIITEEMLYCA 180

Query: 181 TREKLDPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEV 240
           TREKLDPEFVR+EVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAV SSIEEEV
Sbjct: 181 TREKLDPEFVRSEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVTSSIEEEV 240

Query: 241 YKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWE 300
           YK+QWATMWGADTVMDLSTGRHIHETREWILRNS VPVGTVPIYQALEKVDGIAENL+WE
Sbjct: 241 YKLQWATMWGADTVMDLSTGRHIHETREWILRNSPVPVGTVPIYQALEKVDGIAENLTWE 300

Query: 301 VFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAY 360
           VFR+TLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAY
Sbjct: 301 VFRETLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAY 360

Query: 361 EHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNE 420
           EHWD+ILDICNQYD+ALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAW+KDVQVMNE
Sbjct: 361 EHWDDILDICNQYDIALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWEKDVQVMNE 420

Query: 421 GPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTALL 480
           GPGH+P+HKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTALL
Sbjct: 421 GPGHVPLHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTALL 480

Query: 481 CYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKGHPLAQTWDDALSKARFEFRWMDQF 540
           CYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKGHP AQ WDDALSKARFEFRWMDQF
Sbjct: 481 CYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKGHPHAQAWDDALSKARFEFRWMDQF 540

Query: 541 ALSLDPMTAMSFHDETLPSEGAKVAHFCSMCGPKFCSMKITEDVRKYAEEHGYGSAEEAL 600
           ALSLDP+TAMSFHDETLPSEGAKVAHFCSMCGPKFCSMKITEDVRKYAEEHGYGSAEEA+
Sbjct: 541 ALSLDPVTAMSFHDETLPSEGAKVAHFCSMCGPKFCSMKITEDVRKYAEEHGYGSAEEAV 600

Query: 601 QQGMDAMSAEFLAAKKTVSGEQHGEVGGEIYLPESYISSSQ 641
           +QGMDAMSAEFLAAKKT+SGEQHGE GGEIYLPESY++S  
Sbjct: 601 KQGMDAMSAEFLAAKKTISGEQHGESGGEIYLPESYVASKN 641

Length = 642

>gnl\|CDD\|236451 PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional	Back alignment and domain information

>gnl\|CDD\|216813 pfam01964, ThiC, ThiC family	Back alignment and domain information

>gnl\|CDD\|223499 COG0422, ThiC, Thiamine biosynthesis protein ThiC [Coenzyme metabolism]	Back alignment and domain information

>gnl\|CDD\|129294 TIGR00190, thiC, thiamine biosynthesis protein ThiC	Back alignment and domain information

>gnl\|CDD\|237359 PRK13352, PRK13352, thiamine biosynthesis protein ThiC; Provisional	Back alignment and domain information

>gnl\|CDD\|222303 pfam13667, ThiC-associated, ThiC-associated domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		667
PLN02444		642	HMP-P synthase	100.0
PRK09284		607	thiamine biosynthesis protein ThiC; Provisional	100.0
COG0422		432	ThiC Thiamine biosynthesis protein ThiC [Coenzyme	100.0
TIGR00190		423	thiC thiamine biosynthesis protein ThiC. The thiC	100.0
PRK13352		431	thiamine biosynthesis protein ThiC; Provisional	100.0
PF01964		420	ThiC: ThiC family; InterPro: IPR002817 ThiC is fou	100.0
PF13667		80	ThiC-associated: ThiC-associated domain ; PDB: 3EP	99.89
cd00945		201	Aldolase_Class_I Class I aldolases. The class I al	91.38
cd00381		325	IMPDH IMPDH: The catalytic domain of the inosine m	91.14
cd01299		342	Met_dep_hydrolase_A Metallo-dependent hydrolases,	91.09
PTZ00242		166	protein tyrosine phosphatase; Provisional	89.02
PRK04165		450	acetyl-CoA decarbonylase/synthase complex subunit	88.78
TIGR03234		254	OH-pyruv-isom hydroxypyruvate isomerase. This enzy	88.06
COG0422		432	ThiC Thiamine biosynthesis protein ThiC [Coenzyme	87.47
PF01261		213	AP_endonuc_2: Xylose isomerase-like TIM barrel; In	87.05
cd00945		201	Aldolase_Class_I Class I aldolases. The class I al	87.03
cd00019		279	AP2Ec AP endonuclease family 2; These endonuclease	85.28
PRK04452		319	acetyl-CoA decarbonylase/synthase complex subunit	85.07
cd01297		415	D-aminoacylase D-aminoacylases (N-acyl-D-Amino aci	84.23
PRK11165		420	diaminopimelate decarboxylase; Provisional	83.91
cd00959		203	DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of	83.88
cd06828		373	PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PL	83.64
cd02810		289	DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD)	82.11
TIGR01306		321	GMP_reduct_2 guanosine monophosphate reductase, ba	81.85
PRK08227		264	autoinducer 2 aldolase; Validated	81.67
TIGR01496		257	DHPS dihydropteroate synthase. This model represen	81.61
TIGR03099		398	dCO2ase_PEP1 pyridoxal-dependent decarboxylase, ex	81.27
cd00739		257	DHPS DHPS subgroup of Pterin binding enzymes. DHPS	81.17
PRK05581		220	ribulose-phosphate 3-epimerase; Validated	80.49
PF01261		213	AP_endonuc_2: Xylose isomerase-like TIM barrel; In	80.43

>PLN02444 HMP-P synthase	Back alignment and domain information

Probab=100.00  E-value=1.2e-257  Score=2029.44  Aligned_cols=633  Identities=88%  Similarity=1.415  Sum_probs=603.3

Q ss_pred             hhHHHHhcCCCCCCCCCCCccccCCcccccccccc----cccccccc--ccccccCCCCCCCCCCCCccCCCCCCCCCCC
Q 005965            8 TTSIVCKNGIHSTPAKLPSTSFLPGFDVVACKKEI----CSSMSSGI--SAALTFDPPTANSKNTGQRKHTADPASPDFL   81 (667)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (667)
                      +.+.+++..++.+.++++++++++||..++.....    ..++..++  ..+..+.++..+....++++|++||++|+|+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (642)
T PLN02444          2 LLSVVCNNANSSAPLKLPNSSLLPGFDVVVRAQALAVSAARLKKESTATRATLTFDPPTGNSEKAKQTKPTVDPSAPDFL   81 (642)
T ss_pred             ccchHhhccCCcccccccccccccccccccccccccccccccccccccchhhhccCCcccccccccccCCCcCCCCCCCC
Confidence            45677889999999999999999999988744333    33444333  3333444445555688999999999999999


Q ss_pred             CCCcccccCCCCceeeeccccCCCCCccccccEEEeecCCCCceecccCCCCCCCCccCCCCCCCchhhhhhhhcCCCcc
Q 005965           82 PLPSFEQCFPKSSKEYREITHEESGHILQVPFRRIHLSGDEPNFDTYDTSGPQNISPRVGLPKLRKDWIDRREKLGAPRY  161 (667)
Q Consensus        82 ~~~~~~~~~p~S~KiY~~~~~~g~~~~lrVP~ReI~Ls~~~~~~~vYDTSGPy~id~~~GLp~~R~~Wi~~R~d~~~~~m  161 (667)
                      |++++..+||+|+|+|+++.+.+++++||||||+|+|++++++|+||||||||.||+++|||++|.+||.+|++..+.++
T Consensus        82 ~~~~~~~~~p~s~k~y~~~~~~~s~~~~~v~~r~i~l~~~~~~~~~ydtsgp~~~d~~~gl~~~r~~w~~~r~~~~~~~~  161 (642)
T PLN02444         82 PIPSFEECFPKSTKEYKEVVHEESGHVLKVPFRRVHLSGDEPHFDNYDTSGPQNIDPRIGLPKLRKEWIDRREKLGTPRY  161 (642)
T ss_pred             cCCCCCCCCCCCceEeeCCccCCCCCCCcccceEEEeCCCCCCcCcccCCCCcccchhcCChhhhHHHHhcccccCCCcc
Confidence            99999999999999999998777789999999999999999999999999999999999999999999999999888999


Q ss_pred             cHHHHHHcCCCCHHHHHHHHHcCCCHHHHHHHHhcceEEEecCCCCCCCCceEeecCCceeEeeccccCCCCCChHHHHH
Q 005965          162 TQMYYAKQGVITEEMLYCATREKLDPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVY  241 (667)
Q Consensus       162 TQm~~Ar~GiIT~EMe~VA~~E~i~pE~vR~~VA~Gr~VIPaN~nh~~~~p~~IG~gl~tKVNANIGtS~~~~~ieeEve  241 (667)
                      |||++||+|+|||||++||++||++|||||++||+||+|||+|+|||+++||+||+||+||||||||||++.+|+++|||
T Consensus       162 TQm~~Ar~GiIT~EMe~VA~~E~v~pE~vR~~VA~Gr~VIPaN~nh~~~~p~~IG~gl~tKVNANIGtS~~~s~ie~Eve  241 (642)
T PLN02444        162 TQMYYAKQGIITEEMLYCATREKLDPEFVRSEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVTSSIEEEVY  241 (642)
T ss_pred             hHHHHHhcCCCCHHHHHHHHHcCCCHHHHHHHHhCceEEEecCCCCCCCCceEecCCceeEEeeeecCCCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCcEeeecCCCCChHHHHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCCCEEEEec
Q 005965          242 KVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHA  321 (667)
Q Consensus       242 Kl~~A~~~GADtVMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqGVDfmTIHa  321 (667)
                      |++||++||||||||||||+||++||+|||+||||||||||||||+++++|.+++||||+||++|++||+||||||||||
T Consensus       242 K~~~A~~~GADTvMDLSTGgdi~~iR~~Il~~spvPVGTVPIYqA~~~~~~~~~~lt~d~~~d~ieeQaeqGVDfmTIH~  321 (642)
T PLN02444        242 KLQWATMWGADTVMDLSTGRHIHETREWILRNSPVPVGTVPIYQALEKVDGIAENLTWEVFRETLIEQAEQGVDYFTIHA  321 (642)
T ss_pred             HHHHHHHcCCCeEeeccCCCCHHHHHHHHHHcCCCCccCccHHHHHHHhcCChhhCCHHHHHHHHHHHHHhCCCEEEECh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHH
Q 005965          322 GVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELL  401 (667)
Q Consensus       322 Gv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtlSLGDGLRPG~iaDA~D~AQ~~EL~  401 (667)
                      ||+++++++..+|+|||||||||||++||++|++|||||+|||||||||++||||||||||||||||+||||+|||+||+
T Consensus       322 Gv~~~~v~~~~~R~tgIVSRGGSi~a~Wml~~~kENPlYe~FD~ileI~k~YDVtlSLGDGLRPG~iaDA~D~AQ~~EL~  401 (642)
T PLN02444        322 GVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDDILDICNQYDIALSIGDGLRPGSIYDANDTAQFAELL  401 (642)
T ss_pred             hhHHHHHHHHhCcccCceeCCcHHHHHHHHHcCCcCchHHHHHHHHHHHHHhCeeeeccCCcCCCccccCCcHHHHHHHH
Confidence            99999999988999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccccCccccccCCCchhHHHhHHHHHhhhcccceee
Q 005965          402 TQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTALLC  481 (667)
Q Consensus       402 ~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~~APfYvLGPLvTDIApGYDHItsAIGaA~aa~~GadfLC  481 (667)
                      +|||||+|||++|||||||||||||||+|++||++||++|++|||||||||||||||||||||||||||+|||+||||||
T Consensus       402 tLGELtkrA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~~APfYvLGPLvTDIAPGYDHItsAIGaAiaa~~GadfLC  481 (642)
T PLN02444        402 TQGELTRRAWEKDVQVMNEGPGHVPLHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTALLC  481 (642)
T ss_pred             HHHHHHHHHHHcCCeEEEECCCcCcHHHHHHHHHHHHHhhCCCCceecCCcccccCCCchHHHHHHHHHHHHHcCCCeEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCcccccCCCChhHHHHHHHHHHHHHHHhhhhcCCcchhhHHHHHHHHHhhcCHHHHHhccCChHHHHhhhhccCCCCC
Q 005965          482 YVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKGHPLAQTWDDALSKARFEFRWMDQFALSLDPMTAMSFHDETLPSEG  561 (667)
Q Consensus       482 YVTPaEHLgLP~~eDVreGVIA~kIAAHaaDlaKg~p~A~~rD~~mS~AR~~~dWe~Qf~LalDPe~Ar~~~~~~~p~~~  561 (667)
                      ||||||||||||+||||||||||||||||||||||+|+|++||++||+||++|||++||+||||||+||+||++++|.+.
T Consensus       482 YVTPaEHLgLP~~eDVreGVIA~KIAAHAaDlaKg~p~A~~rD~~mS~AR~~~dWe~Qf~LaLDPe~Ar~~~~e~~p~~~  561 (642)
T PLN02444        482 YVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKGHPHAQAWDDALSKARFEFRWMDQFALSLDPVTAMSFHDETLPSEG  561 (642)
T ss_pred             ecChHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHCCHHHHHHHcCCHHHHHHHHHhcCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcccCCCCCchhhhhhHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccCCCccCccCCeeeecCCccccc
Q 005965          562 AKVAHFCSMCGPKFCSMKITEDVRKYAEEHGYGSAEEALQQGMDAMSAEFLAAKKTVSGEQHGEVGGEIYLPESYISSS  640 (667)
Q Consensus       562 ~k~~~~CSMCGp~fCamki~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~g~~~y~~~~~~~~~  640 (667)
                      +|+++|||||||+||||||++++++++++++.....++++.||++|+.+|..++||+||++|.+.|+++|++..+++.+
T Consensus       562 ~k~a~~CSMCGp~fCamki~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~g~~~y~~~~~~~~~  640 (642)
T PLN02444        562 AKVAHFCSMCGPKFCSMKITEDVRKYAEEHGYGSAEEAVKQGMDAMSAEFLAAKKTISGEQHGESGGEIYLPESYVASK  640 (642)
T ss_pred             cCCCCccCCCCcchhhhHHHHHHHHHHhhccccchHHHHHhhHHHhhccccccccchhHHHHHhcCCcccccccchhcc
Confidence            9999999999999999999999999999887754556788999999999999999999999999999999998876544

>PRK09284 thiamine biosynthesis protein ThiC; Provisional	Back alignment and domain information

>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]	Back alignment and domain information

>TIGR00190 thiC thiamine biosynthesis protein ThiC	Back alignment and domain information

>PRK13352 thiamine biosynthesis protein ThiC; Provisional	Back alignment and domain information

>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon	Back alignment and domain information

>PF13667 ThiC-associated: ThiC-associated domain ; PDB: 3EPO_A 3EPN_B 3EPM_B	Back alignment and domain information

>cd00945 Aldolase_Class_I Class I aldolases	Back alignment and domain information

>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase	Back alignment and domain information

>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site	Back alignment and domain information

>PTZ00242 protein tyrosine phosphatase; Provisional	Back alignment and domain information

>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional	Back alignment and domain information

>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase	Back alignment and domain information

>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]	Back alignment and domain information

>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3	Back alignment and domain information

>cd00945 Aldolase_Class_I Class I aldolases	Back alignment and domain information

>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair	Back alignment and domain information

>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional	Back alignment and domain information

>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics	Back alignment and domain information

>PRK11165 diaminopimelate decarboxylase; Provisional	Back alignment and domain information

>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family	Back alignment and domain information

>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase	Back alignment and domain information

>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain	Back alignment and domain information

>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial	Back alignment and domain information

>PRK08227 autoinducer 2 aldolase; Validated	Back alignment and domain information

>TIGR01496 DHPS dihydropteroate synthase	Back alignment and domain information

>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated	Back alignment and domain information

>cd00739 DHPS DHPS subgroup of Pterin binding enzymes	Back alignment and domain information

>PRK05581 ribulose-phosphate 3-epimerase; Validated	Back alignment and domain information

>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		667
3epn_A		612	Crystal Structure Of Caulobacter Crescentus Thic Co		0.0
3epm_A		612	Crystal Structure Of Caulobacter Crescentus Thic Le		0.0

>pdb|3EPN|A Chain A, Crystal Structure Of Caulobacter Crescentus Thic Complexed With Imidazole Ribonucleotide Length = 612

Back alignment and structure

Iteration: 1

Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/591 (60%), Positives = 410/591 (69%), Gaps = 83/591 (14%) Query: 109 LQVPFRRI--HLSGDEPNFDTYDTSGPQN-----ISPRVGLPKLRKDWIDRR---EKLGA 158 L+VPFR + H S +EP YD SGP + I GLP+ R+ + R E++ Sbjct: 35 LRVPFREVAVHPSANEPPVTIYDPSGPYSDPAIQIDIEKGLPRTREALVVARGDVEEVAD 94 Query: 159 PR----------------------------------YTQMYYAKQGVITEEMLYCATREK 184 PR TQ+ YA+ G+IT EM Y A RE Sbjct: 95 PRQVKPEDNGFAQGKHLAPEFPDTGRKIYRAKPGKLVTQLEYARAGIITAEMEYVAIREN 154 Query: 185 L-----------------------DPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLV 221 L PEFVR E+ARGRAIIP+N H ELEPM +GRNFLV Sbjct: 155 LRREQDRPCVRDGEDFGASIPDFVTPEFVRQEIARGRAIIPANINHGELEPMAIGRNFLV 214 Query: 222 KVNANIGNSAVASSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTV 281 K+NANIGNSAV S++ +EV K+ WAT WGADTVMDLSTGR+IH R+WI+RNS+VP+GTV Sbjct: 215 KINANIGNSAVLSTVADEVDKLVWATRWGADTVMDLSTGRNIHNIRDWIIRNSSVPIGTV 274 Query: 282 PIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSR 341 PIYQALEKV+G+AE+L+WEVFRDTLIEQ EQGVDYFTIHAGV L +IP+TAKR+TGIVSR Sbjct: 275 PIYQALEKVNGVAEDLNWEVFRDTLIEQCEQGVDYFTIHAGVRLPFIPMTAKRVTGIVSR 334 Query: 342 GGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELL 401 GGSI AKWCLA+HKENF YE +DEI +I YDV+ S+GDGLRPGS DAND AQF+EL Sbjct: 335 GGSIMAKWCLAHHKENFLYERFDEICEIMRAYDVSFSLGDGLRPGSTADANDEAQFSELR 394 Query: 402 TQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYD 461 T GELT+ AW VQVM EGPGH+ MHKI NM +QL+ C+EAPFYTLGPLTTDIAPGYD Sbjct: 395 TLGELTKVAWKHGVQVMIEGPGHVAMHKIKANMDEQLKHCHEAPFYTLGPLTTDIAPGYD 454 Query: 462 HITSAIGAANIGALGTALLCYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKGHPLAQ 521 HITSAIGAA IG GTA+LCYVTPKEHLGLP+RDDVK GVI YK+AAHAADLAKGHP A Sbjct: 455 HITSAIGAAMIGWFGTAMLCYVTPKEHLGLPDRDDVKTGVITYKLAAHAADLAKGHPGAA 514 Query: 522 TWDDALSKARFEFRWMDQFALSLDPMTAMSFHDETLPSEGAKVAHFCSMCGPKFCSMKIT 581 WDDA+S+ARFEFRW DQF L LDP TA FHDETLP E K AHFCSMCGPKFCSMKI+ Sbjct: 515 MWDDAISRARFEFRWEDQFNLGLDPETARKFHDETLPKEAHKTAHFCSMCGPKFCSMKIS 574 Query: 582 EDVRKYAEEHGYGSAEEALQQGMDAMSAEFLAAKKTVSGEQHGEVGGEIYL 632 ++VR +A G A + + GM MS +F E G EIYL Sbjct: 575 QEVRDFAA----GKAPNSAELGMAEMSEKFR------------EQGSEIYL 609

PyMOL of 3epn

>pdb|3EPM|A Chain A, Crystal Structure Of Caulobacter Crescentus Thic Length = 612

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		667
3epo_A		612	Thiamine biosynthesis protein THIC; alpha-beta bar	0.0
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-18

>3epo_A Thiamine biosynthesis protein THIC; alpha-beta barrel, SAM superfamily, biosynthetic protein; HET: MP5; 2.10A {Caulobacter crescentus} PDB: 3epm_A* 3epn_A* Length = 612	Back alignment and structure

 Score =  910 bits (2353), Expect = 0.0
 Identities = 354/612 (57%), Positives = 410/612 (66%), Gaps = 86/612 (14%)

Query: 90  FPKSSKEYREITHEESGHILQVPFRRIHLS--GDEPNFDTYDTSGP-----QNISPRVGL 142
            P S K Y+          L+VPFR + +    +EP    YD SGP       I    GL
Sbjct: 19  IPGSRKVYQAGELFPE---LRVPFREVAVHPSANEPPVTIYDPSGPYSDPAIQIDIEKGL 75

Query: 143 PKLRKDWIDRR---EKLGAPRY----------------------------------TQMY 165
           P+ R+  +  R   E++  PR                                   TQ+ 
Sbjct: 76  PRTREALVVARGDVEEVADPRQVKPEDNGFAQGKHLAPEFPDTGRKIYRAKPGKLVTQLE 135

Query: 166 YAKQGVITEEMLYCATREKL-----------------------DPEFVRAEVARGRAIIP 202
           YA+ G+IT EM Y A RE L                        PEFVR E+ARGRAIIP
Sbjct: 136 YARAGIITAEMEYVAIRENLRREQDRPCVRDGEDFGASIPDFVTPEFVRQEIARGRAIIP 195

Query: 203 SNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWATMWGADTVMDLSTGRH 262
           +N  H ELEPM +GRNFLVK+NANIGNSAV S++ +EV K+ WAT WGADTVMDLSTGR+
Sbjct: 196 ANINHGELEPMAIGRNFLVKINANIGNSAVLSTVADEVDKLVWATRWGADTVMDLSTGRN 255

Query: 263 IHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAG 322
           IH  R+WI+RNS+VP+GTVPIYQALEKV+G+AE+L+WEVFRDTLIEQ EQGVDYFTIHAG
Sbjct: 256 IHNIRDWIIRNSSVPIGTVPIYQALEKVNGVAEDLNWEVFRDTLIEQCEQGVDYFTIHAG 315

Query: 323 VLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDG 382
           V L +IP+TAKR+TGIVSRGGSI AKWCLA+HKENF YE +DEI +I   YDV+ S+GDG
Sbjct: 316 VRLPFIPMTAKRVTGIVSRGGSIMAKWCLAHHKENFLYERFDEICEIMRAYDVSFSLGDG 375

Query: 383 LRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCN 442
           LRPGS  DAND AQF+EL T GELT+ AW   VQVM EGPGH+ MHKI  NM +QL+ C+
Sbjct: 376 LRPGSTADANDEAQFSELRTLGELTKVAWKHGVQVMIEGPGHVAMHKIKANMDEQLKHCH 435

Query: 443 EAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTALLCYVTPKEHLGLPNRDDVKAGVI 502
           EAPFYTLGPLTTDIAPGYDHITSAIGAA IG  GTA+LCYVTPKEHLGLP+RDDVK GVI
Sbjct: 436 EAPFYTLGPLTTDIAPGYDHITSAIGAAMIGWFGTAMLCYVTPKEHLGLPDRDDVKTGVI 495

Query: 503 AYKIAAHAADLAKGHPLAQTWDDALSKARFEFRWMDQFALSLDPMTAMSFHDETLPSEGA 562
            YK+AAHAADLAKGHP A  WDDA+S+ARFEFRW DQF L LDP TA  FHDETLP E  
Sbjct: 496 TYKLAAHAADLAKGHPGAAMWDDAISRARFEFRWEDQFNLGLDPETARKFHDETLPKEAH 555

Query: 563 KVAHFCSMCGPKFCSMKITEDVRKYAEEHGYGSAEEALQQGMDAMSAEFLAAKKTVSGEQ 622
           K AHFCSMCGPKFCSMKI+++VR +A          + + GM  MS +F           
Sbjct: 556 KTAHFCSMCGPKFCSMKISQEVRDFAAGKA----PNSAELGMAEMSEKFREQ-------- 603

Query: 623 HGEVGGEIYLPE 634
               G EIYL  
Sbjct: 604 ----GSEIYLKT 611

PyMOL of 3epo

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		667
3epo_A		612	Thiamine biosynthesis protein THIC; alpha-beta bar	100.0
3lmz_A		257	Putative sugar isomerase; structural genomics, joi	93.7
3p6l_A		262	Sugar phosphate isomerase/epimerase; TIM barrel, s	93.49
3noy_A		366	4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth;	92.74
2h9a_B		310	CO dehydrogenase/acetyl-COA synthase, iron- sulfur	91.05
1i60_A		278	IOLI protein; beta barrel, structural genomics, PS	90.76
2q02_A		272	Putative cytoplasmic protein; structural genomics,	89.53
3f4w_A		211	Putative hexulose 6 phosphate synthase; humps, mal	87.92
3kws_A		287	Putative sugar isomerase; structural genomics, joi	87.74
2h9a_A		445	Carbon monoxide dehydrogenase corrinoid/iron- sulf	87.22
3iix_A		348	Biotin synthetase, putative; adoMet radical, SAM r	87.11
3b0p_A		350	TRNA-dihydrouridine synthase; TIM barrel, oxidored	86.81
1ub3_A		220	Aldolase protein; schiff base, deoxyribose phospha	86.15
3khj_A		361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	85.71
2yzr_A		330	Pyridoxal biosynthesis lyase PDXS; redox protein,	85.68
3tva_A		290	Xylose isomerase domain protein TIM barrel; struct	84.51
2rdx_A		379	Mandelate racemase/muconate lactonizing enzyme, P;	83.0
2i6j_A		161	Ssoptp, sulfolobus solfataricus protein tyrosine p	82.13
3ctl_A		231	D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p	81.21
1q7z_A		566	5-methyltetrahydrofolate S-homocysteine methyltran	81.13
1f6y_A		262	5-methyltetrahydrofolate corrinoid/iron sulfur PR	80.44

>3epo_A Thiamine biosynthesis protein THIC; alpha-beta barrel, SAM superfamily, biosynthetic protein; HET: MP5; 2.10A {Caulobacter crescentus} PDB: 3epm_A* 3epn_A*	Back alignment and structure

Probab=100.00  E-value=4.5e-246  Score=1940.72  Aligned_cols=529  Identities=66%  Similarity=1.075  Sum_probs=450.0

Q ss_pred             ccccCCCCceeeeccccCCCC-CccccccEEEeecC--CCCceecccCCCCC-----CCCccCCCCCCCchhhhhhhhc-
Q 005965           86 FEQCFPKSSKEYREITHEESG-HILQVPFRRIHLSG--DEPNFDTYDTSGPQ-----NISPRVGLPKLRKDWIDRREKL-  156 (667)
Q Consensus        86 ~~~~~p~S~KiY~~~~~~g~~-~~lrVP~ReI~Ls~--~~~~~~vYDTSGPy-----~id~~~GLp~~R~~Wi~~R~d~-  156 (667)
                      .+.+||+|+|+|++|    ++ ++||||||+|+|++  +++||+||||||||     .||+++|||++|++||.+|+|+ 
T Consensus        15 ~~~~~p~s~k~y~~g----~~~~~~~vp~r~i~l~~~~~~~~~~~ydtsgpy~d~~~~~d~~~glp~~r~~wi~~r~d~~   90 (612)
T 3epo_A           15 STGPIPGSRKVYQAG----ELFPELRVPFREVAVHPSANEPPVTIYDPSGPYSDPAIQIDIEKGLPRTREALVVARGDVE   90 (612)
T ss_dssp             CCSCCTTCEEEEEEC----SSSTTCEEEEEEECCCGGGCCCCEEECCCCGGGGCTTSCCCTTTCSCCTTHHHHHHTTCEE
T ss_pred             ccCCCCCCeeEecCC----CCCCCCccceEEEecCCCCCCCCcceecCCCCCCCCCCccchhhCCchhhHHHHHccCCcc
Confidence            567899999999984    45 68999999999998  48899999999999     6999999999999999999863 


Q ss_pred             ------------------------------------CCCcccHHHHHHcCCCCHHHHHHHHHcC----------------
Q 005965          157 ------------------------------------GAPRYTQMYYAKQGVITEEMLYCATREK----------------  184 (667)
Q Consensus       157 ------------------------------------~~~~mTQm~~Ar~GiIT~EMe~VA~~E~----------------  184 (667)
                                                          .+++||||++||+|+|||||++||++||                
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ra~~g~~~TQm~~Ar~GiIT~EMe~VA~~E~~~~~~~~~~~~~g~~~  170 (612)
T 3epo_A           91 EVADPRQVKPEDNGFAQGKHLAPEFPDTGRKIYRAKPGKLVTQLEYARAGIITAEMEYVAIRENLRREQDRPCVRDGEDF  170 (612)
T ss_dssp             ECSSCCCC--------------CCCCCCSCCCEEECTTCCCSHHHHHHTTCCCHHHHHHHHHHHTTCCSSSCCCCCSCCS
T ss_pred             cccccCcCChhhccccccccccccCCCcCCCCcccCCCCchhHHHHHhcCCCCHHHHHHHHHccccchhhhhhcccCccc
Confidence                                                1457999999999999999999999999                


Q ss_pred             -------CCHHHHHHHHhcceEEEecCCCCCCCCceEeecCCceeEeeccccCCCCCChHHHHHHHHHHHHhCCcEeeec
Q 005965          185 -------LDPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWATMWGADTVMDL  257 (667)
Q Consensus       185 -------i~pE~vR~~VA~Gr~VIPaN~nh~~~~p~~IG~gl~tKVNANIGtS~~~~~ieeEveKl~~A~~~GADtVMDL  257 (667)
                             ++|||||++||+||+|||+|+|||+++||+||+||+||||||||||++++|+++||||++||++|||||||||
T Consensus       171 ~~~~~~~i~pE~vR~~VA~Gr~VIPaN~nh~~~~P~~IG~~l~tKVNaNIGtS~~~~~ie~EveK~~~A~~~GADtvMDL  250 (612)
T 3epo_A          171 GASIPDFVTPEFVRQEIARGRAIIPANINHGELEPMAIGRNFLVKINANIGNSAVLSTVADEVDKLVWATRWGADTVMDL  250 (612)
T ss_dssp             SCCCCSSCCHHHHHHHHHHTSEECCCCTTCTTCCCCCEETTSCCEEEEEECC-----CHHHHHHHHHHHHHTTCSEEEEC
T ss_pred             cccCCCCcCHHHHHHHHhCCeEEeecCCCCCCCCeeEECCCceeEEeeeecCCCCCCCHHHHHHHHHHHHHcCCCEEEec
Confidence                   9999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccC
Q 005965          258 STGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTG  337 (667)
Q Consensus       258 STGgdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~Rvtg  337 (667)
                      ||||||++||+|||+||||||||||||||++|++|++++||||+|||+|++||+||||||||||||++++++++.+|+||
T Consensus       251 STGgdi~~~R~~Il~~spvPiGTVPIYqA~~k~~g~~~~lt~e~~~d~ie~QAeqGVDfmTIHaGv~~~~v~~~~~R~tg  330 (612)
T 3epo_A          251 STGRNIHNIRDWIIRNSSVPIGTVPIYQALEKVNGVAEDLNWEVFRDTLIEQCEQGVDYFTIHAGVRLPFIPMTAKRVTG  330 (612)
T ss_dssp             CCSTTHHHHHHHHHTTCSSCEEECHHHHHHHHTTTCGGGCCHHHHHHHHHHHHHHTCCEEEECTTCCGGGGGGGTTSSSC
T ss_pred             cCCCCHHHHHHHHHHcCCCCccCcchHHHHHHhCCChhhCCHHHHHHHHHHHHHhCCCEEEEcccccHHHHHHhcCCcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeE
Q 005965          338 IVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQV  417 (667)
Q Consensus       338 IVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtlSLGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQV  417 (667)
                      |||||||||++||++|++|||||+|||+|||||++||||||||||||||||+||||+|||+||++|||||+|||++||||
T Consensus       331 IVSRGGSima~Wml~~~kENplYe~FD~ileI~k~YDVtlSLGDglRPG~iaDA~D~AQ~~EL~~LGELtkrAwe~gVQV  410 (612)
T 3epo_A          331 IVSRGGSIMAKWCLAHHKENFLYERFDEICEIMRAYDVSFSLGDGLRPGSTADANDEAQFSELRTLGELTKVAWKHGVQV  410 (612)
T ss_dssp             CCCHHHHHHHHHHHHHTCCCHHHHTHHHHHHHHTTTTCEEEECCTTCCSSGGGTTCHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred             eecCcHHHHHHHHHHcCCcChHHHHHHHHHHHHHHhCeEEecccccCCCccccCCcHHHHHHHHHHHHHHHHHHHcCCcE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeCCCCCCCCchHHHHHHHHHhcCCCCccccCccccccCCCchhHHHhHHHHHhhhcccceeeecCcccccCCCChhHH
Q 005965          418 MNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTALLCYVTPKEHLGLPNRDDV  497 (667)
Q Consensus       418 MIEGPGHVPl~~I~~Nv~lqk~lC~~APfYvLGPLvTDIApGYDHItsAIGaA~aa~~GadfLCYVTPaEHLgLP~~eDV  497 (667)
                      |||||||||||+|++||++||++|++|||||||||||||||||||||||||||+|||+||||||||||||||||||+|||
T Consensus       411 MIEGPGHVPl~~I~~Nv~lqk~lC~~APfYvLGPLvTDIAPGYDHItsAIGaA~aa~~GadfLCYVTPaEHLgLP~~eDV  490 (612)
T 3epo_A          411 MIEGPGHVAMHKIKANMDEQLKHCHEAPFYTLGPLTTDIAPGYDHITSAIGAAMIGWFGTAMLCYVTPKEHLGLPDRDDV  490 (612)
T ss_dssp             EEECCCBCCHHHHHHHHHHHHHHTTTCCEEEECCBSCSSCTTCHHHHHHHHHHHHHHHTCCEEECCCTTTTTSCCCHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHHHhcCCCCccccCccccccCCCchHHHHHHHHHHHHHhchhheeeccHHHHcCCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhcCCcchhhHHHHHHHHHhhcCHHHHHhccCChHHHHhhhhccCCCCCCCCCCcccCCCCCchh
Q 005965          498 KAGVIAYKIAAHAADLAKGHPLAQTWDDALSKARFEFRWMDQFALSLDPMTAMSFHDETLPSEGAKVAHFCSMCGPKFCS  577 (667)
Q Consensus       498 reGVIA~kIAAHaaDlaKg~p~A~~rD~~mS~AR~~~dWe~Qf~LalDPe~Ar~~~~~~~p~~~~k~~~~CSMCGp~fCa  577 (667)
                      |+|||||||||||||||||+|+|++||++||+||++|||++||+||||||+||+||++++|.+.+|+++|||||||+|||
T Consensus       491 keGVIA~KIAAHaaDlAKg~pgA~~rD~~mS~AR~~~dWe~Qf~LalDPe~Ar~~~~e~~p~~~~k~~~~CSMCGp~fCa  570 (612)
T 3epo_A          491 KTGVITYKLAAHAADLAKGHPGAAMWDDAISRARFEFRWEDQFNLGLDPETARKFHDETLPKEAHKTAHFCSMCGPKFCS  570 (612)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHTTCHHHHHHTSSCHHHHHHHC------------------------
T ss_pred             HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHCCHHHHHHHcCCHHHHHHHHHhhCccccCCCCCccCCCCCchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999988899999999999999


Q ss_pred             hhhhHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccCCCccCccCCeeeecC
Q 005965          578 MKITEDVRKYAEEHGYGSAEEALQQGMDAMSAEFLAAKKTVSGEQHGEVGGEIYLPE  634 (667)
Q Consensus       578 mki~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~g~~~y~~~  634 (667)
                      |||++++++++...+.    +++++||++||+||++            .|++||+|.
T Consensus       571 mki~~~~~~~~~~~~~----~~~~~gm~~~~~~f~~------------~g~~~y~~~  611 (612)
T 3epo_A          571 MKISQEVRDFAAGKAP----NSAELGMAEMSEKFRE------------QGSEIYLKT  611 (612)
T ss_dssp             ---------------------------------------------------------
T ss_pred             HHHHHHHHHhhcccch----hHHHHHHHHHHHHHHh------------cCCceeccC
Confidence            9999999998776543    3567899999999999            899999975

PyMOL of 3epo

>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}	Back alignment and structure

>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}	Back alignment and structure

>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}	Back alignment and structure

>2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B*	Back alignment and structure

>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A	Back alignment and structure

>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4	Back alignment and structure

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0	Back alignment and structure

>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}	Back alignment and structure

>2h9a_A Carbon monoxide dehydrogenase corrinoid/iron- sulfur protein, gamma subunit; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_A*	Back alignment and structure

>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*	Back alignment and structure

>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*	Back alignment and structure

>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*	Back alignment and structure

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}	Back alignment and structure

>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii}	Back alignment and structure

>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}	Back alignment and structure

>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens}	Back alignment and structure

>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB: 2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A*	Back alignment and structure

>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*	Back alignment and structure

>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A	Back alignment and structure

>1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		667
d1i60a_		278	Hypothetical protein IolI {Bacillus subtilis [TaxI	95.26
d1wufa1		244	N-acylamino acid racemase {Listeria innocua [TaxId	87.39
d2q02a1		271	Putative cytoplasmic protein STM4435 {Salmonella t	86.98
d1ccwb_		483	Glutamate mutase, large subunit {Clostridium cochl	86.72
d1wuea1		241	N-acylamino acid racemase {Enterococcus faecalis [	84.79
d1bf6a_		291	Phosphotriesterase homology protein {Escherichia c	83.94
d1yx1a1		250	Hypothetical protein PA2260 {Pseudomonas aeruginos	83.05
d2flia1		217	D-ribulose-5-phosphate 3-epimerase {Streptococcus	81.16

>d1i60a_ c.1.15.4 (A:) Hypothetical protein IolI {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: IolI-like
domain: Hypothetical protein IolI
species: Bacillus subtilis [TaxId: 1423]

Probab=95.26  E-value=0.067  Score=48.53  Aligned_cols=161  Identities=12%  Similarity=0.104  Sum_probs=96.5

Q ss_pred             eEeeccccCCCCCChHHHHHHHHHHHHhCCcEeeecCCCCChHHHHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCHHH
Q 005965          222 KVNANIGNSAVASSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEV  301 (667)
Q Consensus       222 KVNANIGtS~~~~~ieeEveKl~~A~~~GADtVMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~e~  301 (667)
                      |+..|--+..-..++++.+   +.|-++|-|.| +|.+. +..                 |      ..   ..+.+.++
T Consensus         2 k~~~~~~~~~~~~~l~~~l---~~a~~~Gf~~I-El~~~-~~~-----------------~------~~---~~~~~~~~   50 (278)
T d1i60a_           2 KLCFNEATTLENSNLKLDL---ELCEKHGYDYI-EIRTM-DKL-----------------P------EY---LKDHSLDD   50 (278)
T ss_dssp             EEEEEGGGGTTTCCHHHHH---HHHHHTTCSEE-EEETT-THH-----------------H------HH---TTSSCHHH
T ss_pred             EEEEeHHHhCCCCCHHHHH---HHHHHHCcCEE-EeCCc-ccc-----------------c------cc---cCcccHHH
Confidence            5666666666666787765   57779999988 46443 211                 1      00   11223455


Q ss_pred             HHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccC
Q 005965          302 FRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGD  381 (667)
Q Consensus       302 ~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtlSLGD  381 (667)
                      +.+.+.+   -|+....+|+.........                     . .++ -..++|.+.+++|++-++..-.  
T Consensus        51 l~~~l~~---~gl~i~~~~~~~~~~~~~~---------------------~-~~~-~~~~~~~~~i~~a~~lG~~~i~--  102 (278)
T d1i60a_          51 LAEYFQT---HHIKPLALNALVFFNNRDE---------------------K-GHN-EIITEFKGMMETCKTLGVKYVV--  102 (278)
T ss_dssp             HHHHHHT---SSCEEEEEEEEECCSSCCH---------------------H-HHH-HHHHHHHHHHHHHHHHTCCEEE--
T ss_pred             HHHHHHH---cCCcEEEEecCCCCCCCCH---------------------H-HHH-HHHHHHHHHHHHHHHcCCCccc--
Confidence            5555443   5888888886433211100                     0 011 1367888888888887765421  


Q ss_pred             CCCCCCc-cCCCcHHHHHHH-HHHHHHHHHHHhcCCeEEee--CCCCCCCCchHHHHHHHHHhcC
Q 005965          382 GLRPGSI-YDANDTAQFAEL-LTQGELTRRAWDKDVQVMNE--GPGHIPMHKIPENMQKQLEWCN  442 (667)
Q Consensus       382 GLRPG~i-aDA~D~AQ~~EL-~~LGEL~krA~e~gVQVMIE--GPGHVPl~~I~~Nv~lqk~lC~  442 (667)
                       +-||.. .+..+..++..+ ..|.+|++.|.++||++-+|  |...--++...+-+++-+++.+
T Consensus       103 -~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~~~~~~~~~~~~~~~~ll~~v~~  166 (278)
T d1i60a_         103 -AVPLVTEQKIVKEEIKKSSVDVLTELSDIAEPYGVKIALEFVGHPQCTVNTFEQAYEIVNTVNR  166 (278)
T ss_dssp             -EECCBCSSCCCHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCTTBSSCSHHHHHHHHHHHCC
T ss_pred             -cccccCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCeeeeeeccccccccCCHHHHHHHHHHhhc
Confidence             112211 234444455544 46999999999999999999  3322457788888888888765

PyMOL of d1i60a_

>d1wufa1 c.1.11.2 (A:1127-1370) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]}	Back information, alignment and structure

>d2q02a1 c.1.15.4 (A:1-271) Putative cytoplasmic protein STM4435 {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d1ccwb_ c.1.19.2 (B:) Glutamate mutase, large subunit {Clostridium cochlearium [TaxId: 1494]}	Back information, alignment and structure

>d1wuea1 c.1.11.2 (A:1127-1367) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]}	Back information, alignment and structure

>d1bf6a_ c.1.9.3 (A:) Phosphotriesterase homology protein {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1yx1a1 c.1.15.7 (A:3-252) Hypothetical protein PA2260 {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure

>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]}	Back information, alignment and structure