Citrus Sinensis ID: 005989

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660------
MERGEAKGESAEQKKQELKMKVKKLKKGGIQVGKRSGPSTPSPIWRLEFTSLNRPIVQEFLDPNNIPTTTTVSARKLCATLWEIHPQPHHHHTSLAKMPNPKSSHFNHNSRPFNLPNYVRHPPTCSPHPHPRQPESASGSRRHLSASLMKHHESVERNGHALQPVSPASYDNSMEVAAYNPAVTPTSSLDSRGKLGKPRYNLKTSTELLTVLNRIWSLEEQHVSDIALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRKLARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIRDYEEEVRLLRHKPEMDHAHMKNADRLILHISESWLDERMQMKIAETQNSLSDKNTILDKLRLDIENFLQAKHFSKSRTGGSLSTNEQKKSHSSRHSTESFPLNEAVSAPRDTVNEEYSTDVDLQVLELNKSASRKQSRGSSKQHGDSARKGHLEELVNSNSGKKKVRSRKRNKGHNLSSLPGWFHEHVTRTESQFPDWERGELEGETGATEESKHNGAGGLKLNHVVDDLIRNHSLSSEGDKVHPETDLKEDSHVQSLFTSHGSPVQKWMSKLTSPDFEKSESSLKVPRGLKVNTLKEKLLEARLEAQHSCSKPSKSSF
ccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccHHHccccccccccccHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHccccccccHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccc
ccccccccccHHHHHHcccccHHHHHcccEEEcccccccccccEEEEccccccccHHHHHccHHcccccccHHHHHHHHHHHHHcccccHHHcHcccccccccccccccccccccccccccccccccccccccccccccccHcccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccHccHHHHcccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHcccccc
mergeakgesaEQKKQELKMKVKKLKKggiqvgkrsgpstpspiwrleftslnrpivqefldpnniptttTVSARKLCATLweihpqphhhhtslakmpnpksshfnhnsrpfnlpnyvrhpptcsphphprqpesasgsrrHLSASLMKHHEsvernghalqpvspasydnsmevaaynpavtptssldsrgklgkprynlktsTELLTVLNRIWSLEEQHVSDIALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRKLARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIRDYEEEVRLLrhkpemdhahmKNADRLILHISESWLDERMQMKIAETqnslsdkntILDKLRLDIENFLQAKhfsksrtggslstneqkkshssrhstesfplneavsaprdtvneeystdVDLQVLELNKsasrkqsrgsskqhgdsarKGHLEELVnsnsgkkkvrsrkrnkghnlsslpgwfhehvtrtesqfpdwergelegetgateeskhngagglklNHVVDDLirnhslssegdkvhpetdlkedshvqslftshgspvqkwmskltspdfeksesslkvprglkvnTLKEKLLEARLEAqhscskpskssf
mergeakgesaeqkkQELKMKVKKlkkggiqvgkrsgpstpspiwRLEFTSLNRPIVQEFLDPNNIPTTTTVSARKLCATLWEIHPQPHHHHTSLAKMPNPKSSHFNHNSRPFNLPNYVRHPPTCSPHPHPRQPESASGSRRHLSASLMKHHESVERNGHALQPVSPASYDNSMEVAAYNPavtptssldsrgklgkprynlktsteLLTVLNRIWSLEEQHVSDIALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAeekiirkdkernriKAAVqswkdelederklrkcSESLHrklardlsdmkssfSNILKELERERKARILLENLCDEFAKGIRDYEEEVRLLRHkpemdhahmknADRLILHISESWLDERMQMKIAetqnslsdknTILDKLRLDIENFLQAkhfsksrtggslstneqkkshssrhstesfplneavsaprDTVNEEYSTDVDLQVLELNksasrkqsrgsskqhgdsarkghleelvnsnsgkkkvrsrkrnkghnlsslpgwfhehvtrtesqfpdweRGELEGETGateeskhngagglkLNHVVDDLIRNHSlssegdkvhpetdLKEDSHVQSLFtshgspvqkwMSKLTSpdfeksesslkvprglkVNTLKEKLLEARleaqhscskpskssf
MERGEAKGESAeqkkqelkmkvkklkkggiqvgkRSGPSTPSPIWRLEFTSLNRPIVQEFLDPNNIPTTTTVSARKLCATLWEIHPQPHHHHTSLAKMPNPKSSHFNHNSRPFNLPNYVRHPPTCSPHPHPRQPESASGSRRHLSASLMKHHESVERNGHALQPVSPASYDNSMEVAAYNPAVTPTSSLDSRGKLGKPRYNLKTSTELLTVLNRIWSLEEQHVSDIALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRKLARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIRDYEEEVRLLRHKPEMDHAHMKNADRLILHISESWLDERMQMKIAETQNSLSDKNTILDKLRLDIENFLQAKHFSKSRTGGSLSTNEQKKSHSSRHSTESFPLNEAVSAPRDTVNEEYSTDVDLQVLELNKSASRKQSRGSSKQHGDSARKGHLEELVNSNSGKKKVRSRKRNKGHNLSSLPGWFHEHVTRTESQFPDWergelegetgateeSKHNGAGGLKLNHVVDDLIRNHSLSSEGDKVHPETDLKEDSHVQSLFTSHGSPVQKWMSKLTSPDFEKSESSLKVPRGLKVNTlkekllearleaQHSCSKPSKSSF
********************************************WRLEFTSLNRPIVQEFLDPNNIPTTTTVSARKLCATLWEI*******************************************************************************************************************YNLKTSTELLTVLNRIWSLEEQHVSDIALVKALKMEL********************************************************************************************RKARILLENLCDEFAKGIRDYEEEVRLLRH********MKNADRLILHISESWLDERM***************TILDKLRLDIENFLQ*****************************************************************************************************************WFH**************************************NHVVDDL*****************************************************************************************
***************************************************************************KLCATLWEI******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
******************KMKVKKLKKGGIQVGKRSGPSTPSPIWRLEFTSLNRPIVQEFLDPNNIPTTTTVSARKLCATLWEIHPQ*********KMPNPKSSHFNHNSRPFNLPNYVRHPPT*********************ASLMKHHESVERNGHALQPVSPASYDNSMEVAAYNPAVTPTSSLDSRGKLGKPRYNLKTSTELLTVLNRIWSLEEQHVSDIALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRI****************LRKCSESLHRKLARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIRDYEEEVRLLRHKPEMDHAHMKNADRLILHISESWLDERMQMKIAETQNSLSDKNTILDKLRLDIENFLQAKHF*****************************NEAVSAPRDTVNEEYSTDVDLQVLELNK********************GHLEELVN***************GHNLSSLPGWFHEHVTRTESQFPDWERGELEGETGATEESKHNGAGGLKLNHVVDDLIRNHSL****************SHVQSLFTSHGSPVQKWMSKLT************VPRGLKVNTLKEKLLEARL**************
*******************MKVKKLKKGGIQVGKRSGPSTPSPIWRLEF**********************V*ARKLCATLWEIHPQP**************************************************************************************************************RYNLKTSTELLTVLNRIWSLEEQHVSDIALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRKLARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIRDYEEEVRLLRHKPEMDHAHMKNADRLILHISESWLDERMQMKIAETQNSLSDKNTILDKLRLDIENFLQAKH************************TESFP*********************L*****************************************************************************************************HVVDD*****SLS***********LKEDSHVQS***SHGSP**KWMSKLTSPDFEKSESSLKVPRGLKVNTLKEKLLEARLE*************
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xxxxxxxxxxxxxxxxxxxxxxxxxxxxGIQVGKRSGPSTPSPIWRLEFTSLNRPIVQEFLDPNNIPTTTTVSARKLCATLWEIHPQPHHHHTSLAKMPNPKSSHFNHNSRPFNLPNYVRHPPTCSPHPHPRQPESASGSRRHLSASLMKHHESVERNGHALQPVSPASYDNSMEVAAYNPAVTPTSSLDSRGKLGKPRYNLKTSTELLTVLNRIWSLEEQHVSDIALxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKIIRKDKExxxxxxxxxxxxxxxxxxxxxRKCSESLHRKLxxxxxxxxxxxxxxxxxxxxxRKARILLENLCDEFAKGIRDYEEEVRLLRHKPEMDHAHMKNADRLILHISESWLDERMQMKIAETQNSLSDKNTILDKLRLDIENFLQAKHFSKSRTGGSLSTNEQKKSHSSRHSTESFPLNEAVSAPRDTVNEEYSTDVDLQVLELNKSASRKQSRGSSKQHGDSARKGHLEELVNSNSGKKKVRSRKRNKGHNLSSLPGWFHEHVTRTESQFPDWERGELEGETGATEESKHNGAGGLKLNHVVDDLIRNHSLSSEGDKVHPETDLKEDSHVQSLFTSHGSPVQKWMSKLTSPDFEKSESSLKVPRGLKVNTLKEKLLEARLEAQHSCSKPSKSSF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query666 2.2.26 [Sep-21-2011]
Q66GQ2623 Uncharacterized protein A yes no 0.807 0.863 0.404 2e-99
>sp|Q66GQ2|Y5162_ARATH Uncharacterized protein At5g41620 OS=Arabidopsis thaliana GN=At5g41620 PE=1 SV=2 Back     alignment and function desciption
 Score =  363 bits (932), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 249/615 (40%), Positives = 347/615 (56%), Gaps = 77/615 (12%)

Query: 66  IPTTTTVSARKLCATLWEIHPQPHH-------------HHTSLAKMPNPKSSHFNHNSR- 111
           +P +  VS+RKL A  WE H Q H+                 + + PN  +   +   R 
Sbjct: 40  VPNSIVVSSRKLAAAFWEFH-QYHYKDEEDCSYSYLSSASAKMHRGPNGFAGASSRRQRH 98

Query: 112 ---------PFNLPNYVRHPPTCSPHPHPRQPESASGSRRHLSASLMKHHESVERNGHAL 162
                      +L  ++R P   SP     QP+SA   RR +   L+KHH+S++RN HAL
Sbjct: 99  GKAVAVKENGLDLSQFLRDP---SPD---HQPDSAGSLRRQIGQMLIKHHQSIDRNNHAL 152

Query: 163 QPVSPASYDNSMEVAAYNPAVTPTSSLDSRGKLGK-PRYNLKTSTELLTVLNRIWSLEEQ 221
           QPVSPASY +S+EV  YN AVTP+SSL+ RG+  + P YNLKTSTELL VLNRIWSLEEQ
Sbjct: 153 QPVSPASYGSSLEVTTYNKAVTPSSSLEFRGRPSREPHYNLKTSTELLKVLNRIWSLEEQ 212

Query: 222 HVSDIALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKA 281
           HVS+I+L+KALK E+ HS+ +IKELL+ +Q +R E++ ++KQ+AEEK++ K+KE  R+ +
Sbjct: 213 HVSNISLIKALKTEVAHSRVRIKELLRYQQADRHELDSVVKQLAEEKLLSKNKEVERMSS 272

Query: 282 AVQSWKDELEDERKLRKCSESLHRKLARDLSDMKSSFSNILKELERERKARILLENLCDE 341
           AVQS +  LEDERKLRK SESLHRK+AR+LS++KSS SN +KELER  K+  ++E LCDE
Sbjct: 273 AVQSVRKALEDERKLRKRSESLHRKMARELSEVKSSLSNCVKELERGSKSNKMMELLCDE 332

Query: 342 FAKGIRDYEEEVRLLRHKP-EMDHAHMKNADRLILHISESWLDERMQMKIAETQNSLSDK 400
           FAKGI+ YEEE+  L+ K  + D A     D+L+LHI+ESWLDERMQM++ E  ++L+ K
Sbjct: 333 FAKGIKSYEEEIHGLKKKNLDKDWAGRGGGDQLVLHIAESWLDERMQMRL-EGGDTLNGK 391

Query: 401 N-TILDKLRLDIENFLQAKHFSKSRTGGSLSTNEQKKSHSSRHSTESFPLNEAVSAPRDT 459
           N ++LDKL ++IE FLQ K     R              + R+S ES P N   + PRD 
Sbjct: 392 NRSVLDKLEVEIETFLQEKRNEIPR--------------NRRNSLESVPFNTLSAPPRDV 437

Query: 460 VNEEYSTDVDLQVLELNKSASRKQSRGS-SKQHGDSARKGHLEELVNSNSGKKKVRSRKR 518
             EE S   D    EL K A   +S G  +K+     + G ++E   S S  +       
Sbjct: 438 DCEEDSGGSDSNCFELKKPA---ESYGDETKKPNQHNKDGSIDEKPKSPSSFQV------ 488

Query: 519 NKGHNLSSLPGWFHEHVTR---TESQFPDWERGELEGETGATEESKHNGAGGLKLNHVVD 575
               N      W      +   T +   + E  +++ E     +   N       N V+ 
Sbjct: 489 ----NFEDQMAWALSSNGKKKTTRAIEDEEEEEDVKPENSNNNKKPENECATTNKNDVMG 544

Query: 576 DLIRNHSLSSEGDKVHPETDLKEDSHVQSLFTS---HGSPVQKWMSKLTSPDFEKSESSL 632
           ++IR H       ++  ET  +E       F S     SPV++W+S+  +PD     S +
Sbjct: 545 EMIRTHR------RLLSET--REIDEASCNFPSSRRQASPVRQWISRTVAPDL-LGPSEI 595

Query: 633 KVPRGLKVNTLKEKL 647
            +  G+K NTLK KL
Sbjct: 596 AIAHGVKDNTLKTKL 610

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query666
359489831648 PREDICTED: uncharacterized protein At5g4 0.929 0.955 0.572 0.0
224064133673 predicted protein [Populus trichocarpa] 0.951 0.942 0.550 0.0
224127828672 predicted protein [Populus trichocarpa] 0.977 0.968 0.532 1e-176
255541770663 conserved hypothetical protein [Ricinus 0.876 0.880 0.502 1e-162
255537659696 conserved hypothetical protein [Ricinus 0.947 0.906 0.462 1e-148
356560304641 PREDICTED: uncharacterized protein At5g4 0.887 0.921 0.472 1e-143
224058421576 predicted protein [Populus trichocarpa] 0.800 0.925 0.527 1e-143
356522546641 PREDICTED: uncharacterized protein At5g4 0.869 0.903 0.470 1e-141
224072067593 predicted protein [Populus trichocarpa] 0.831 0.934 0.495 1e-140
356495701666 PREDICTED: uncharacterized protein At5g4 0.915 0.915 0.444 1e-134
>gi|359489831|ref|XP_002276470.2| PREDICTED: uncharacterized protein At5g41620-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/671 (57%), Positives = 473/671 (70%), Gaps = 52/671 (7%)

Query: 23  KKLKKGGIQVGKRSGPSTPSPIWRLEFTSLNRPIVQEFLDPNNIPTTTTVSARKLCATLW 82
           KKLK+G + VGKR GP TPSP WRL F SLN       +D  ++  +T+VSARKL A LW
Sbjct: 3   KKLKRG-VLVGKRGGPCTPSPTWRLGF-SLNDATSS--ID-KDLDCSTSVSARKLGANLW 57

Query: 83  EIHPQPHHHHTSLAKM--PNPKSSHFNHNSRPFNLPNYVRHPPTCSPHPHPRQPESASGS 140
           EI       H  +A M     +  H +H  + F LP ++  PP    H  P QPESAS  
Sbjct: 58  EIQS-----HLPVANMNRGGGRLRHHHHKDKGFELPTHLVDPP----HSPPDQPESASSL 108

Query: 141 RRHLSASLMKHHESVERNGHALQPVSPASYDNSMEVAAYNPAVTPTSSLDSRGKLGKPRY 200
           RRH++ASLM+HH SVERNG ALQPVSPASY           ++TPTSSLD +G++G+  Y
Sbjct: 109 RRHVAASLMQHHRSVERNGRALQPVSPASY-----------SITPTSSLDFKGRIGESSY 157

Query: 201 NLKTSTELLTVLNRIWSLEEQHVSDIALVKALKMELDHSQTKIKELLQEKQTERQEVNDL 260
           NLKTSTELL VLNRIWSLEEQH S I+LVKALKMELDHS+ +IKELLQEKQTERQE++DL
Sbjct: 158 NLKTSTELLKVLNRIWSLEEQHASTISLVKALKMELDHSRARIKELLQEKQTERQEMDDL 217

Query: 261 MKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRKLARDLSDMKSSFSN 320
           MKQVAE+K+IRK KE++RIKAAVQS +DELEDERKLRK SE+LHRKLAR+LS++KSSFSN
Sbjct: 218 MKQVAEDKLIRKTKEQDRIKAAVQSVRDELEDERKLRKRSETLHRKLARELSEVKSSFSN 277

Query: 321 ILKELERERKARILLENLCDEFAKGIRDYEEEVRLLRHKPEMDHAHMKNADRLILHISES 380
            L+ELERE+KARILLE+LCDEFAKGIR+YE+EVR L+HKPE D    +N+DRL+LHISE+
Sbjct: 278 ALRELEREKKARILLEDLCDEFAKGIREYEQEVRSLKHKPEKDRVARENSDRLVLHISEA 337

Query: 381 WLDERMQMKIAETQNSLSDKNTILDKLRLDIENFLQAKHFSKSRTGGSLSTNEQKKSHSS 440
           WLDERMQMK+AE +  +++KNTI+DKL  +IE FL+AK    SR     S +EQK+S   
Sbjct: 338 WLDERMQMKLAEARCDVAEKNTIVDKLSFEIETFLRAKQSVTSRRDDYSSPSEQKESRLR 397

Query: 441 RHSTESFPLNEAVSAPRDTVNEEYSTDVDLQVLELNKSASRKQSRGSSKQHGDSARKGHL 500
           RHS ESF LNEAVSAP++  +EE S+D D    ELNK +  KQS GS K+H  ++ +GH 
Sbjct: 398 RHSLESFHLNEAVSAPQNAEDEEDSSDSDSHCFELNKGSGAKQSNGSCKKHIGNSAEGHA 457

Query: 501 EELVNSNSGKKKVRSRKRNKGHNLSSLPGWFHEHVTRT------ESQFPDWERGELEGET 554
           E+ V S   KKK  S++  KG   S L   F E++ RT      ++Q  D E+GE+ G+ 
Sbjct: 458 EDTVKSYPTKKKSGSQEITKGRKPSGLRTQFEEYMARTMSCNGNKTQLVDSEQGEMGGDD 517

Query: 555 G-------------ATEES------KHNGAGGLKLNHVVDDLIRNHSLSSEGDKVHPETD 595
                         AT+ES      K  GA G+ LNHV+D+LIRNHS   EG+KVHPE +
Sbjct: 518 SVEINNSQKFEPNEATQESMPEKKNKRAGARGVNLNHVLDNLIRNHSSPLEGEKVHPENN 577

Query: 596 LKEDSHVQSLFTSHGSPVQKWMSKLTSPDFEKSESSLKVPRGLKVNTLKEKLLEARLEAQ 655
            +ED+  QS+   H SP+Q+WMSKLTSPD E SESS K PRG + N+LK KLLEARLE Q
Sbjct: 578 CREDAGNQSVLMGHASPIQQWMSKLTSPDLEISESSSKWPRGSRENSLKAKLLEARLEGQ 637

Query: 656 HSCSKPSKSSF 666
           H  +K SK SF
Sbjct: 638 HFRAKASKGSF 648

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224064133|ref|XP_002301390.1| predicted protein [Populus trichocarpa] gi|222843116|gb|EEE80663.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224127828|ref|XP_002320174.1| predicted protein [Populus trichocarpa] gi|222860947|gb|EEE98489.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255541770|ref|XP_002511949.1| conserved hypothetical protein [Ricinus communis] gi|223549129|gb|EEF50618.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|255537659|ref|XP_002509896.1| conserved hypothetical protein [Ricinus communis] gi|223549795|gb|EEF51283.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356560304|ref|XP_003548433.1| PREDICTED: uncharacterized protein At5g41620-like [Glycine max] Back     alignment and taxonomy information
>gi|224058421|ref|XP_002299501.1| predicted protein [Populus trichocarpa] gi|222846759|gb|EEE84306.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356522546|ref|XP_003529907.1| PREDICTED: uncharacterized protein At5g41620-like [Glycine max] Back     alignment and taxonomy information
>gi|224072067|ref|XP_002303618.1| predicted protein [Populus trichocarpa] gi|222841050|gb|EEE78597.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356495701|ref|XP_003516712.1| PREDICTED: uncharacterized protein At5g41620-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query666
TAIR|locus:2160477623 AT5G41620 "AT5G41620" [Arabido 0.543 0.581 0.519 2.5e-90
TAIR|locus:2024568593 AT1G64180 "AT1G64180" [Arabido 0.522 0.586 0.434 4e-67
TAIR|locus:2080792622 AT3G11590 [Arabidopsis thalian 0.648 0.694 0.317 6.5e-51
TAIR|locus:2062877468 AT2G46250 "AT2G46250" [Arabido 0.337 0.480 0.428 1.4e-48
TAIR|locus:2007996725 AT1G50660 [Arabidopsis thalian 0.689 0.633 0.224 5.1e-27
TAIR|locus:2092319673 AT3G20350 [Arabidopsis thalian 0.415 0.411 0.257 3.3e-25
TAIR|locus:2176387481 AT5G22310 "AT5G22310" [Arabido 0.279 0.386 0.300 1e-14
UNIPROTKB|F1SS61 1943 MYH3 "Uncharacterized protein" 0.393 0.134 0.266 2.3e-08
UNIPROTKB|Q8IIG7 1070 PF11_0207 "Uncharacterized pro 0.441 0.274 0.206 2.4e-08
MGI|MGI:1339709 1940 Myh3 "myosin, heavy polypeptid 0.393 0.135 0.270 3.8e-08
TAIR|locus:2160477 AT5G41620 "AT5G41620" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 901 (322.2 bits), Expect = 2.5e-90, P = 2.5e-90
 Identities = 200/385 (51%), Positives = 266/385 (69%)

Query:   129 PHP-RQPESASGSRRHLSASLMKHHESVERNGHALQPVSPASYDNSMEVAAYNPAVTPTS 187
             P P  QP+SA   RR +   L+KHH+S++RN HALQPVSPASY +S+EV  YN AVTP+S
Sbjct:   118 PSPDHQPDSAGSLRRQIGQMLIKHHQSIDRNNHALQPVSPASYGSSLEVTTYNKAVTPSS 177

Query:   188 SLDSRGKLGK-PRYNLKTSTELLTVLNRIWSLEEQHVSDIALVKALKMELDHSQTKIKEL 246
             SL+ RG+  + P YNLKTSTELL VLNRIWSLEEQHVS+I+L+KALK E+ HS+ +IKEL
Sbjct:   178 SLEFRGRPSREPHYNLKTSTELLKVLNRIWSLEEQHVSNISLIKALKTEVAHSRVRIKEL 237

Query:   247 LQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRK 306
             L+ +Q +R E++ ++KQ+AEEK++ K+KE  R+ +AVQS +  LEDERKLRK SESLHRK
Sbjct:   238 LRYQQADRHELDSVVKQLAEEKLLSKNKEVERMSSAVQSVRKALEDERKLRKRSESLHRK 297

Query:   307 LARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIRDYEEEVRLLRHKP-EMDHA 365
             +AR+LS++KSS SN +KELER  K+  ++E LCDEFAKGI+ YEEE+  L+ K  + D A
Sbjct:   298 MARELSEVKSSLSNCVKELERGSKSNKMMELLCDEFAKGIKSYEEEIHGLKKKNLDKDWA 357

Query:   366 HMKNADRLILHISESWLDERMQMKIAETQNSLSDKN-TILDKLRLDIENFLQAKHFSKSR 424
                  D+L+LHI+ESWLDERMQM++ E  ++L+ KN ++LDKL ++IE FLQ K      
Sbjct:   358 GRGGGDQLVLHIAESWLDERMQMRL-EGGDTLNGKNRSVLDKLEVEIETFLQEKR----- 411

Query:   425 TGGSLSTNEQKKSHSSRHSTESFPLNEAVSAPRDTVNEEYSTDVDLQVLELNKSASRKQS 484
                    NE  ++   R+S ES P N   + PRD   EE S   D    EL K A   +S
Sbjct:   412 -------NEIPRNR--RNSLESVPFNTLSAPPRDVDCEEDSGGSDSNCFELKKPA---ES 459

Query:   485 RGS-SKQHGDSARKGHLEELVNSNS 508
              G  +K+     + G ++E   S S
Sbjct:   460 YGDETKKPNQHNKDGSIDEKPKSPS 484
GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005886 "plasma membrane" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
TAIR|locus:2024568 AT1G64180 "AT1G64180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080792 AT3G11590 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062877 AT2G46250 "AT2G46250" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2007996 AT1G50660 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2092319 AT3G20350 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2176387 AT5G22310 "AT5G22310" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1SS61 MYH3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IIG7 PF11_0207 "Uncharacterized protein PF11_0207" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
MGI|MGI:1339709 Myh3 "myosin, heavy polypeptide 3, skeletal muscle, embryonic" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q66GQ2Y5162_ARATHNo assigned EC number0.40480.80780.8635yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query666
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 6e-06
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-05
pfam09726680 pfam09726, Macoilin, Transmembrane protein 3e-05
pfam07888546 pfam07888, CALCOCO1, Calcium binding and coiled-co 4e-04
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 8e-04
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.001
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 0.002
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.003
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.003
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.003
pfam00038312 pfam00038, Filament, Intermediate filament protein 0.003
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information 
 Score = 49.3 bits (118), Expect = 6e-06
 Identities = 37/213 (17%), Positives = 89/213 (41%), Gaps = 9/213 (4%)

Query: 205 STELLTVLNRIWSLEEQHVSDIALVKALKMELDHSQT---KIKELLQEKQTERQEVNDLM 261
             EL  +  R+  LEE+  S    +  LK E++  +     ++E L+E + E +E    +
Sbjct: 750 EEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRL 809

Query: 262 KQVAEEK------IIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRKLARDLSDMK 315
             +  E         R ++E   ++  ++  +++L++  +  +  E    +L  +L +++
Sbjct: 810 DALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELE 869

Query: 316 SSFSNILKELERERKARILLENLCDEFAKGIRDYEEEVRLLRHKPEMDHAHMKNADRLIL 375
           +    +  EL+   + +  LE    E    + + +EE+  LR + E   A ++  +  + 
Sbjct: 870 AEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELP 929

Query: 376 HISESWLDERMQMKIAETQNSLSDKNTILDKLR 408
            + E   +E       E +  +      ++ L 
Sbjct: 930 ELEEELEEEYEDTLETELEREIERLEEEIEALG 962

Length = 1163
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein Back     alignment and domain information
>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|200948 pfam00038, Filament, Intermediate filament protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 666
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 97.17
KOG0977546 consensus Nuclear envelope protein lamin, intermed 96.62
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 96.5
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 96.47
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 96.18
KOG0971 1243 consensus Microtubule-associated protein dynactin 96.15
PF00038312 Filament: Intermediate filament protein; InterPro: 95.94
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 94.9
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 94.7
TIGR006061311 rad50 rad50. This family is based on the phylogeno 94.63
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 94.5
PF00038312 Filament: Intermediate filament protein; InterPro: 94.47
KOG0977546 consensus Nuclear envelope protein lamin, intermed 94.41
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 94.35
KOG0996 1293 consensus Structural maintenance of chromosome pro 94.24
KOG09331174 consensus Structural maintenance of chromosome pro 92.95
PHA02562562 46 endonuclease subunit; Provisional 92.91
COG11961163 Smc Chromosome segregation ATPases [Cell division 92.86
PRK02224880 chromosome segregation protein; Provisional 92.78
PRK03918 880 chromosome segregation protein; Provisional 92.11
PF11559151 ADIP: Afadin- and alpha -actinin-Binding; InterPro 92.1
PF06705247 SF-assemblin: SF-assemblin/beta giardin 91.6
PF05615139 THOC7: Tho complex subunit 7; InterPro: IPR008501 91.34
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 91.07
PRK02224 880 chromosome segregation protein; Provisional 91.02
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 91.0
PF05701522 WEMBL: Weak chloroplast movement under blue light; 90.9
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 90.41
PRK09039343 hypothetical protein; Validated 90.16
PF05701522 WEMBL: Weak chloroplast movement under blue light; 90.05
PF10174 775 Cast: RIM-binding protein of the cytomatrix active 89.85
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 88.89
KOG0964 1200 consensus Structural maintenance of chromosome pro 88.62
KOG01631259 consensus Myosin class VI heavy chain [Cytoskeleto 88.07
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 87.48
KOG09331174 consensus Structural maintenance of chromosome pro 87.24
KOG0963629 consensus Transcription factor/CCAAT displacement 87.06
KOG05791187 consensus Ste20-like serine/threonine protein kina 86.97
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 86.61
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 85.91
PF07798177 DUF1640: Protein of unknown function (DUF1640); In 85.55
COG4717 984 Uncharacterized conserved protein [Function unknow 85.41
KOG0971 1243 consensus Microtubule-associated protein dynactin 85.37
PF07798177 DUF1640: Protein of unknown function (DUF1640); In 84.38
PF09727192 CortBP2: Cortactin-binding protein-2; InterPro: IP 84.19
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 84.13
PRK11637428 AmiB activator; Provisional 83.96
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 82.75
KOG3915641 consensus Transcription regulator dachshund, conta 82.54
COG4942420 Membrane-bound metallopeptidase [Cell division and 81.91
TIGR006061311 rad50 rad50. This family is based on the phylogeno 81.68
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 81.48
PF09731582 Mitofilin: Mitochondrial inner membrane protein; I 81.12
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 80.59
KOG0996 1293 consensus Structural maintenance of chromosome pro 80.05
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information 
Probab=97.17  E-value=0.016  Score=67.76  Aligned_cols=174  Identities=26%  Similarity=0.322  Sum_probs=100.7

Q ss_pred             ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005989          218 LEEQHVSDIALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLR  297 (666)
Q Consensus       218 leeq~~s~~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~R  297 (666)
                      |....-..=+-|..|+.|-++.+.++..|.+.++.++..|..|=|+|++|+..+-            .+-.+|..|||.|
T Consensus       451 l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~------------~lEkQL~eErk~r  518 (697)
T PF09726_consen  451 LTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRA------------SLEKQLQEERKAR  518 (697)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHH
Confidence            4443344446788999999999999999999999999999999999999987443            4566799999999


Q ss_pred             hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhcCcchhhh--hhhhhhhHHH
Q 005989          298 KCSESLHRKLARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIRDYEEEVRLLRHKPEMDHA--HMKNADRLIL  375 (666)
Q Consensus       298 rr~E~ln~KL~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve~lk~es~k~~~--ee~eeER~mL  375 (666)
                      +..|.-   -++-++.+.+.-.   .--|.=|..+.=||.-|+.|-+++..-++.+..|..+....+.  .|.+.|-+||
T Consensus       519 ~~ee~~---aar~~~~~~~~r~---e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L  592 (697)
T PF09726_consen  519 KEEEEK---AARALAQAQATRQ---ECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVL  592 (697)
T ss_pred             hHHHHh---hhhccccchhccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence            998763   3332111111100   0011123333445555555555555555555544444321111  2234455555


Q ss_pred             HHhhhhhHHhhhhhHhhhhcccchhhHHHHHHHHHHHHHHhh
Q 005989          376 HISESWLDERMQMKIAETQNSLSDKNTILDKLRLDIENFLQA  417 (666)
Q Consensus       376 q~AEvWrEERvQMKL~eAk~~leeK~s~~dkL~~elE~FL~s  417 (666)
                      ..|=.=    ||-|    -..||...++=.++..||=.-|..
T Consensus       593 ~~aL~a----mqdk----~~~LE~sLsaEtriKldLfsaLg~  626 (697)
T PF09726_consen  593 MSALSA----MQDK----NQHLENSLSAETRIKLDLFSALGD  626 (697)
T ss_pred             HHHHHH----HHHH----HHHHHHhhhHHHHHHHHHHHHHHH
Confidence            444321    1111    123455555555666666666654

; GO: 0016021 integral to membrane
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch Back     alignment and domain information
>PF06705 SF-assemblin: SF-assemblin/beta giardin Back     alignment and domain information
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus [] Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] Back     alignment and domain information
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins Back     alignment and domain information
>COG4717 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins Back     alignment and domain information
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1) Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription] Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query666
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-12
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 4e-10
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 4e-07
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 5e-06
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-05
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-04
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 7e-07
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 3e-05
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 4e-04
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 5e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 70.3 bits (171), Expect = 1e-12
 Identities = 94/646 (14%), Positives = 195/646 (30%), Gaps = 160/646 (24%)

Query: 89  HHHH---TSLAKMPNPKSSHFNHNSRPFNLPNYVRHPPTCSPHPHPR------------- 132
           HHHH       +       +   +        +V +         P+             
Sbjct: 2   HHHHHMDFETGEH-----QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIM 56

Query: 133 QPESASGSRRHLSASLMKHHESVER-NGHALQPVSPASYD---NSMEVAAYNPAVTPTSS 188
             ++ SG+ R     L K  E V++     L+     +Y    + ++     P++     
Sbjct: 57  SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI----NYKFLMSPIKTEQRQPSMMTRMY 112

Query: 189 LDSRGKLGK-----PRYNLKTSTELLTVLNRIWSLEEQHVSDIAL---------VKALKM 234
           ++ R +L        +YN+ +  +    L R   LE +   ++ +           AL +
Sbjct: 113 IEQRDRLYNDNQVFAKYNV-SRLQPYLKL-RQALLELRPAKNVLIDGVLGSGKTWVALDV 170

Query: 235 ELDHSQTKIKEL------LQEKQTER---QEVNDLMKQVAEEKIIRKDKERNRIKAAVQS 285
            L +      +       L+   +     + +  L+ Q+      R D   N IK  + S
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN-IKLRIHS 229

Query: 286 WKDELEDERKLRKCSESLHRKLARDLSDMKSSFSNILKELERERKARILL----ENLCDE 341
            + EL    K +     L   L   L ++++  +            +ILL    + + D 
Sbjct: 230 IQAELRRLLKSKPYENCL---L--VLLNVQN--AKAWNAF--NLSCKILLTTRFKQVTD- 279

Query: 342 FAKGIRDYEEEVRLLRHKPEMDHAHMKNADRLILHISESWLDERMQMK---------IAE 392
           F          + L  H   +    +K+     L       D   ++          IAE
Sbjct: 280 FLSAAT--TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ--DLPREVLTTNPRRLSIIAE 335

Query: 393 TQNSLSD--------KNTILDKLRLDIENFLQAKHFSKSRTGGSLSTNEQKKSHSSRHST 444
              S+ D        K+   DKL   IE+ L             L   E +K        
Sbjct: 336 ---SIRDGLATWDNWKHVNCDKLTTIIESSLNV-----------LEPAEYRKMF---DRL 378

Query: 445 ESFPLNEAVSAPRDTV----NEEYSTDVDLQVLEL-NKSASRKQSRGSS----------K 489
             FP   +   P   +     +   +DV + V +L   S   KQ + S+          K
Sbjct: 379 SVFP--PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436

Query: 490 QHGDSARKGHLEELVNSNSGKKKVRSRKRNKGHNLSSLP--GWFHEHV---------TRT 538
              ++    H   +V+           K     +L       +F+ H+            
Sbjct: 437 VKLENEYALH-RSIVD------HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489

Query: 539 ESQFP------DWERGELEGETGATEESKHNGAGGLKLNHVVDDLI--RNHSLSSEGDKV 590
            + F        +   ++  ++ A      N +G   + + +  L   + +   ++    
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAW-----NASGS--ILNTLQQLKFYKPYICDNDPKYE 542

Query: 591 HPETDLKE--DSHVQSLFTS-HGSPVQKWMSKLTSPDFEKSESSLK 633
                + +      ++L  S +   ++  +       FE++   ++
Sbjct: 543 RLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query666
2ocy_A154 RAB guanine nucleotide exchange factor SEC2; RAB, 97.29
2eqb_B97 RAB guanine nucleotide exchange factor SEC2; coile 95.94
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 95.18
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 93.72
2e7s_A135 RAB guanine nucleotide exchange factor SEC2; coile 92.09
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 90.59
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 90.15
2hg7_A110 Phage-like element PBSX protein XKDW; dimer, GFT s 89.63
3ol1_A119 Vimentin; structural genomics, PSI-2, protein stru 89.23
3u59_A101 Tropomyosin beta chain; muscle contraction, actin, 89.2
3u1c_A101 Tropomyosin alpha-1 chain; anti-parallel coiled co 87.22
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 86.12
2w6b_A56 RHO guanine nucleotide exchange factor 7; X-RAY cr 83.35
3oja_A487 Leucine-rich immune molecule 1; coiled-coil, helix 83.07
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 82.31
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 81.85
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 81.25
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure
Probab=97.29  E-value=0.0072  Score=57.65  Aligned_cols=127  Identities=21%  Similarity=0.335  Sum_probs=99.6

Q ss_pred             hHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005989          205 STELLTVLNRIWSLEEQHVSDIALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQ  284 (666)
Q Consensus       205 S~EllkVLnrIw~leeq~~s~~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~  284 (666)
                      |+.|+..+|++-.|+|.       +..++.+|..++.+|++|+..+..    ++.+...    +        .-+.+-+.
T Consensus         5 StKLI~Ain~qs~LeD~-------L~~~R~el~~~~~ri~~lE~~r~~----~~~l~~~----~--------~~~~~e~~   61 (154)
T 2ocy_A            5 STQLIESVDKQSHLEEQ-------LNKSLKTIASQKAAIENYNQLKED----YNTLKRE----L--------SDRDDEVK   61 (154)
T ss_dssp             HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHTTHHHHHH----HHHHHTH----H--------HHHHHHHH
T ss_pred             HHHHHHHHHhhccHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH----H--------hhhhHHHH
Confidence            68999999999888885       578899999999999999987653    3333222    1        23566777


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHH
Q 005989          285 SWKDELEDERKLRKCSESLHRKLARDLSDMKSS-FSNILKELERERKARILLENLCDEFAKGIRDYEEEVR  354 (666)
Q Consensus       285 slk~ELe~ERk~Rrr~E~ln~KL~~ELae~K~s-~~~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve  354 (666)
                      .|.++|..|+..|..+|.-..++-.||-+.-.| |..|=+=.-.+|+.+..+|.=-+.|-..+.+-+.-++
T Consensus        62 ~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~  132 (154)
T 2ocy_A           62 RLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLD  132 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999997655 5555555567899999999888888887776544443
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>2hg7_A Phage-like element PBSX protein XKDW; dimer, GFT structural genomics, PSI, protein structure initiative; NMR {Bacillus subtilis} SCOP: d.186.2.1 Back     alignment and structure
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} Back     alignment and structure
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus} Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00